Query 014086
Match_columns 431
No_of_seqs 394 out of 3075
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 05:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.8E-46 1.6E-50 340.5 25.2 248 99-359 20-268 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 7.9E-46 2.7E-50 340.4 26.6 251 95-355 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 3.8E-37 1.3E-41 268.6 15.6 171 100-358 14-184 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 2.1E-35 7.2E-40 254.8 19.7 181 96-360 8-188 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 1.1E-34 3.8E-39 243.3 19.9 166 102-354 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-34 3.7E-39 243.9 19.5 165 100-352 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 2.8E-34 9.5E-39 241.1 21.0 164 101-352 2-167 (167)
8 2qfj_A FBP-interacting repress 100.0 5.9E-34 2E-38 249.6 22.9 181 100-357 27-207 (216)
9 2cjk_A Nuclear polyadenylated 100.0 9.3E-35 3.2E-39 244.0 16.2 165 100-355 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 3.5E-33 1.2E-37 236.3 19.0 166 100-353 2-175 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 4E-32 1.4E-36 234.6 20.6 183 100-357 3-196 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 2.8E-32 9.6E-37 230.0 18.0 159 100-353 3-172 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 4.7E-33 1.6E-37 235.5 13.0 167 96-355 8-174 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 2E-31 6.7E-36 229.6 20.8 194 100-352 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 5.7E-31 2E-35 240.2 24.9 246 98-353 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 6.1E-31 2.1E-35 231.9 22.1 194 98-355 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 6.3E-31 2.2E-35 227.0 17.4 192 100-355 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 9.2E-31 3.2E-35 235.4 17.1 161 98-359 19-183 (261)
19 3smz_A Protein raver-1, ribonu 99.9 4.9E-27 1.7E-31 214.4 17.8 164 98-266 92-265 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.8E-26 6.3E-31 211.4 13.9 162 99-265 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-23 5.6E-28 173.3 18.6 84 275-358 70-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 9.4E-23 3.2E-27 158.6 9.9 98 98-197 2-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 4.7E-22 1.6E-26 149.8 11.0 83 98-180 16-98 (99)
24 2i2y_A Fusion protein consists 99.9 9.9E-22 3.4E-26 160.9 13.8 139 140-356 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.9 5.7E-22 1.9E-26 149.4 10.1 80 275-354 19-98 (99)
26 3q2s_C Cleavage and polyadenyl 99.9 1.1E-22 3.6E-27 177.8 4.0 82 275-356 68-151 (229)
27 3s8s_A Histone-lysine N-methyl 99.8 1E-20 3.4E-25 145.3 11.3 84 98-181 3-86 (110)
28 2lxi_A RNA-binding protein 10; 99.8 2.9E-21 9.8E-26 143.2 7.8 82 276-357 2-85 (91)
29 2lxi_A RNA-binding protein 10; 99.8 2E-21 7E-26 144.1 6.1 82 101-182 1-84 (91)
30 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.9E-24 137.4 13.7 86 273-358 6-91 (99)
31 2lkz_A RNA-binding protein 5; 99.8 7.2E-21 2.5E-25 141.5 6.6 81 100-180 8-94 (95)
32 2dnz_A Probable RNA-binding pr 99.8 9.1E-20 3.1E-24 136.9 12.7 85 274-358 4-88 (95)
33 3s8s_A Histone-lysine N-methyl 99.8 3.6E-20 1.2E-24 142.2 10.5 84 274-357 5-88 (110)
34 2lkz_A RNA-binding protein 5; 99.8 1.1E-20 3.8E-25 140.4 7.2 80 275-354 9-94 (95)
35 1x5u_A Splicing factor 3B subu 99.8 1.8E-19 6.1E-24 137.9 13.7 88 272-359 12-99 (105)
36 2dgs_A DAZ-associated protein 99.8 1.8E-19 6.2E-24 136.3 13.5 86 273-359 8-93 (99)
37 3lqv_A PRE-mRNA branch site pr 99.8 4E-20 1.4E-24 144.1 9.8 105 98-207 5-109 (115)
38 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.2E-20 2.1E-24 151.2 11.5 86 273-358 37-122 (156)
39 1x5t_A Splicing factor 3B subu 99.8 8.5E-20 2.9E-24 137.3 10.8 86 274-359 4-90 (96)
40 2dnm_A SRP46 splicing factor; 99.8 1.5E-19 5.2E-24 137.8 12.1 86 273-358 11-96 (103)
41 2dgo_A Cytotoxic granule-assoc 99.8 4E-19 1.4E-23 138.4 14.7 88 272-359 12-99 (115)
42 2lea_A Serine/arginine-rich sp 99.8 3.8E-20 1.3E-24 147.9 9.0 126 227-359 6-131 (135)
43 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-19 4.6E-24 137.9 11.6 87 273-359 10-96 (102)
44 2cph_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 137.0 13.7 88 272-359 12-101 (107)
45 2cq0_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 138.1 11.3 88 272-359 12-99 (103)
46 2dnz_A Probable RNA-binding pr 99.8 1.3E-19 4.6E-24 136.0 11.0 85 98-182 2-86 (95)
47 3md1_A Nuclear and cytoplasmic 99.8 1.4E-19 4.7E-24 132.2 10.7 81 101-181 1-81 (83)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5.3E-24 137.5 11.4 87 273-359 10-96 (102)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.8E-24 134.0 10.2 82 100-181 5-86 (87)
50 3md1_A Nuclear and cytoplasmic 99.8 1.3E-19 4.3E-24 132.4 10.4 81 276-356 2-82 (83)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.6E-24 133.5 9.9 82 98-179 4-85 (85)
52 1u6f_A Tcubp1, RNA-binding pro 99.8 4.8E-19 1.6E-23 142.9 14.5 88 271-358 38-125 (139)
53 2x1f_A MRNA 3'-END-processing 99.8 2.2E-19 7.4E-24 135.0 11.6 84 275-358 2-85 (96)
54 1x4h_A RNA-binding protein 28; 99.8 4.9E-19 1.7E-23 137.0 13.8 88 272-359 12-105 (111)
55 2cqd_A RNA-binding region cont 99.8 7.9E-19 2.7E-23 136.9 15.0 86 272-358 14-99 (116)
56 2x1f_A MRNA 3'-END-processing 99.8 8.5E-20 2.9E-24 137.2 9.1 85 100-184 1-85 (96)
57 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1E-19 3.4E-24 151.2 10.4 130 230-359 11-156 (165)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.5E-24 132.5 10.2 80 274-353 6-85 (85)
59 1whw_A Hypothetical protein ri 99.8 1.8E-19 6.1E-24 136.4 10.5 86 98-183 5-90 (99)
60 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-19 5.4E-24 133.2 9.9 82 274-355 5-86 (87)
61 3p5t_L Cleavage and polyadenyl 99.8 4.8E-20 1.6E-24 136.7 7.0 80 102-181 2-83 (90)
62 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.9E-24 141.1 9.4 82 275-358 5-86 (115)
63 2e5h_A Zinc finger CCHC-type a 99.8 2E-19 6.7E-24 134.7 10.3 83 97-179 12-94 (94)
64 3pgw_S U1-70K; protein-RNA com 99.8 9.6E-20 3.3E-24 173.9 10.8 86 272-357 99-184 (437)
65 2cqc_A Arginine/serine-rich sp 99.8 1.8E-19 6.2E-24 135.2 10.1 84 97-180 11-94 (95)
66 2cpz_A CUG triplet repeat RNA- 99.8 3.4E-19 1.2E-23 138.7 12.0 87 273-359 23-109 (115)
67 2fy1_A RNA-binding motif prote 99.8 4.9E-19 1.7E-23 137.6 12.8 84 274-358 6-89 (116)
68 2dgp_A Bruno-like 4, RNA bindi 99.8 4.4E-19 1.5E-23 136.0 12.3 86 273-358 11-99 (106)
69 2e5h_A Zinc finger CCHC-type a 99.8 4.4E-19 1.5E-23 132.8 12.0 81 273-353 14-94 (94)
70 2cqc_A Arginine/serine-rich sp 99.8 3.3E-19 1.1E-23 133.8 11.3 84 271-354 11-94 (95)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 6.9E-19 2.3E-23 134.3 13.2 85 273-359 13-98 (104)
72 2do4_A Squamous cell carcinoma 99.8 4.2E-19 1.4E-23 134.5 11.9 84 273-357 15-98 (100)
73 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.9E-19 3.4E-23 133.2 13.9 85 273-359 13-97 (103)
74 2la6_A RNA-binding protein FUS 99.8 2.5E-19 8.6E-24 135.4 10.4 84 96-179 8-99 (99)
75 2dgs_A DAZ-associated protein 99.8 3.1E-19 1.1E-23 135.0 10.8 85 97-182 6-90 (99)
76 3q2s_C Cleavage and polyadenyl 99.8 6.4E-20 2.2E-24 160.2 8.0 82 100-181 67-150 (229)
77 2d9p_A Polyadenylate-binding p 99.8 3.9E-19 1.3E-23 135.5 11.4 86 272-359 12-97 (103)
78 2dgx_A KIAA0430 protein; RRM d 99.8 6.5E-19 2.2E-23 132.2 12.4 82 274-358 8-93 (96)
79 2cpf_A RNA binding motif prote 99.8 2.1E-19 7.2E-24 135.7 9.6 86 274-359 4-92 (98)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 5.8E-19 2E-23 135.1 12.1 86 273-359 13-101 (105)
81 2cq0_A Eukaryotic translation 99.8 2.1E-19 7.2E-24 137.0 9.6 85 98-182 12-96 (103)
82 1x5u_A Splicing factor 3B subu 99.8 2.8E-19 9.7E-24 136.8 10.3 86 97-182 11-96 (105)
83 2jrs_A RNA-binding protein 39; 99.8 2.3E-19 8E-24 137.5 9.8 84 98-181 23-106 (108)
84 3ns6_A Eukaryotic translation 99.8 7.7E-20 2.6E-24 138.2 7.0 81 275-355 6-93 (100)
85 3ns6_A Eukaryotic translation 99.8 4.2E-20 1.4E-24 139.7 5.5 82 100-181 5-93 (100)
86 2do4_A Squamous cell carcinoma 99.8 4E-19 1.4E-23 134.6 10.9 83 98-181 14-96 (100)
87 1oo0_B CG8781-PA, drosophila Y 99.8 5.8E-19 2E-23 136.3 12.0 85 273-357 24-108 (110)
88 2dng_A Eukaryotic translation 99.8 6.7E-19 2.3E-23 134.1 12.1 84 273-358 13-96 (103)
89 2cpz_A CUG triplet repeat RNA- 99.8 3E-19 1E-23 139.0 10.2 85 98-182 22-106 (115)
90 1x5t_A Splicing factor 3B subu 99.8 2E-19 6.7E-24 135.3 8.9 83 99-181 3-86 (96)
91 2cq3_A RNA-binding protein 9; 99.8 1.6E-18 5.4E-23 132.1 14.0 85 272-358 12-96 (103)
92 2dnm_A SRP46 splicing factor; 99.8 2E-19 7E-24 137.1 9.0 85 97-181 9-93 (103)
93 2dgo_A Cytotoxic granule-assoc 99.8 4.6E-19 1.6E-23 138.0 11.2 85 98-182 12-96 (115)
94 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-19 8.3E-24 136.4 9.3 85 97-181 8-92 (102)
95 1sjq_A Polypyrimidine tract-bi 99.8 3.9E-19 1.3E-23 133.2 10.2 80 97-182 12-93 (105)
96 2cpe_A RNA-binding protein EWS 99.8 7.1E-19 2.4E-23 136.5 12.0 86 273-358 13-106 (113)
97 1p27_B RNA-binding protein 8A; 99.8 4.6E-19 1.6E-23 135.9 10.7 84 273-356 21-104 (106)
98 1x4h_A RNA-binding protein 28; 99.8 4.5E-19 1.5E-23 137.2 10.7 85 97-181 11-101 (111)
99 2kxn_B Transformer-2 protein h 99.8 3.4E-19 1.2E-23 141.0 10.0 86 96-181 41-126 (129)
100 3ex7_B RNA-binding protein 8A; 99.8 6.6E-19 2.3E-23 139.5 11.7 86 273-358 20-105 (126)
101 1p27_B RNA-binding protein 8A; 99.8 4E-19 1.4E-23 136.3 10.1 83 99-181 21-103 (106)
102 2cpf_A RNA binding motif prote 99.8 3.1E-19 1.1E-23 134.7 9.2 84 99-182 3-89 (98)
103 3s7r_A Heterogeneous nuclear r 99.8 5.4E-19 1.9E-23 130.2 10.3 81 97-178 7-87 (87)
104 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-19 7.8E-24 136.6 8.5 85 98-182 9-93 (102)
105 2jrs_A RNA-binding protein 39; 99.8 4.8E-19 1.7E-23 135.7 10.2 84 273-356 24-107 (108)
106 3p5t_L Cleavage and polyadenyl 99.8 6.2E-20 2.1E-24 136.0 4.9 83 276-358 2-86 (90)
107 2dhg_A TRNA selenocysteine ass 99.8 5.6E-19 1.9E-23 134.9 10.3 86 273-359 7-94 (104)
108 4a8x_A RNA-binding protein wit 99.8 4.5E-19 1.6E-23 131.0 9.4 83 275-357 4-87 (88)
109 1s79_A Lupus LA protein; RRM, 99.8 2.5E-19 8.7E-24 135.6 8.2 81 98-180 8-88 (103)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 146.8 10.7 84 98-181 69-152 (165)
111 3r27_A HnRNP L, heterogeneous 99.8 7.8E-19 2.7E-23 130.1 10.4 78 273-356 19-98 (100)
112 1x4e_A RNA binding motif, sing 99.8 1.8E-19 6.2E-24 132.2 6.9 82 98-179 2-83 (85)
113 1s79_A Lupus LA protein; RRM, 99.8 5.3E-19 1.8E-23 133.8 9.5 79 274-354 10-88 (103)
114 2la6_A RNA-binding protein FUS 99.8 7.1E-19 2.4E-23 132.9 10.2 82 272-353 10-99 (99)
115 1sjq_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 132.0 9.7 80 274-359 15-96 (105)
116 1x4a_A Splicing factor, argini 99.8 3.7E-18 1.3E-22 131.4 14.3 83 272-357 19-101 (109)
117 2cph_A RNA binding motif prote 99.8 7.2E-19 2.5E-23 135.1 10.2 86 98-183 12-99 (107)
118 2wbr_A GW182, gawky, LD47780P; 99.8 8.2E-19 2.8E-23 124.9 9.6 73 275-353 7-79 (89)
119 3n9u_C Cleavage and polyadenyl 99.8 5.6E-19 1.9E-23 144.4 10.1 82 100-181 54-137 (156)
120 3ucg_A Polyadenylate-binding p 99.8 7.6E-19 2.6E-23 130.1 9.9 80 101-181 6-85 (89)
121 2div_A TRNA selenocysteine ass 99.8 5.3E-19 1.8E-23 133.7 9.1 85 273-357 7-96 (99)
122 2div_A TRNA selenocysteine ass 99.8 6.3E-19 2.2E-23 133.3 9.5 84 98-181 6-94 (99)
123 2ywk_A Putative RNA-binding pr 99.8 8.5E-19 2.9E-23 131.5 10.1 81 98-179 13-93 (95)
124 2do0_A HnRNP M, heterogeneous 99.8 3.7E-18 1.3E-22 132.6 14.1 85 273-358 13-97 (114)
125 3ucg_A Polyadenylate-binding p 99.8 9.9E-19 3.4E-23 129.5 10.2 80 275-355 6-85 (89)
126 2dgp_A Bruno-like 4, RNA bindi 99.8 5.3E-19 1.8E-23 135.5 9.0 85 98-182 10-97 (106)
127 2kxn_B Transformer-2 protein h 99.8 7.7E-19 2.6E-23 139.0 10.1 86 272-357 43-128 (129)
128 1oo0_B CG8781-PA, drosophila Y 99.8 7.5E-19 2.6E-23 135.7 9.8 84 98-181 23-106 (110)
129 2dhg_A TRNA selenocysteine ass 99.8 9.4E-19 3.2E-23 133.6 10.3 85 97-182 5-91 (104)
130 2dh8_A DAZ-associated protein 99.8 6.6E-19 2.2E-23 134.7 9.3 86 272-358 13-98 (105)
131 2wbr_A GW182, gawky, LD47780P; 99.8 7.6E-19 2.6E-23 125.0 8.8 75 99-179 5-79 (89)
132 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.7E-23 129.4 10.0 78 98-181 18-97 (100)
133 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.4E-23 133.1 10.8 83 98-181 12-97 (105)
134 2khc_A Testis-specific RNP-typ 99.8 5.9E-19 2E-23 138.1 9.0 81 98-178 37-117 (118)
135 2cpe_A RNA-binding protein EWS 99.8 8.2E-19 2.8E-23 136.1 9.8 85 98-182 12-104 (113)
136 2fy1_A RNA-binding motif prote 99.8 9.4E-19 3.2E-23 136.0 10.1 83 98-181 4-86 (116)
137 2dh8_A DAZ-associated protein 99.8 7E-19 2.4E-23 134.6 9.2 84 98-182 13-96 (105)
138 1x4b_A Heterogeneous nuclear r 99.8 8.5E-19 2.9E-23 136.7 9.8 85 273-358 25-109 (116)
139 1x4d_A Matrin 3; structural ge 99.8 1.1E-18 3.9E-23 130.8 9.9 79 274-358 14-95 (102)
140 2khc_A Testis-specific RNP-typ 99.8 1.4E-18 4.8E-23 135.9 10.9 82 272-353 37-118 (118)
141 2d9p_A Polyadenylate-binding p 99.8 1E-18 3.4E-23 133.2 9.8 83 98-182 12-94 (103)
142 2dng_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 133.0 9.8 82 98-181 12-93 (103)
143 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 4.2E-23 129.8 10.0 84 273-358 6-89 (92)
144 4a8x_A RNA-binding protein wit 99.8 7.3E-19 2.5E-23 129.9 8.7 82 100-181 3-85 (88)
145 2kt5_A RNA and export factor-b 99.8 6.4E-18 2.2E-22 133.3 14.6 87 271-358 31-117 (124)
146 2m2b_A RNA-binding protein 10; 99.8 9.4E-19 3.2E-23 139.4 9.8 85 272-357 20-110 (131)
147 2dis_A Unnamed protein product 99.8 4.3E-18 1.5E-22 131.1 13.1 85 274-358 7-95 (109)
148 2ek1_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 133.5 6.9 81 99-179 13-93 (95)
149 3ulh_A THO complex subunit 4; 99.8 1.7E-18 5.8E-23 133.0 10.7 82 97-179 25-106 (107)
150 1x4c_A Splicing factor, argini 99.8 6.8E-18 2.3E-22 129.6 14.1 79 274-359 14-97 (108)
151 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.7E-23 130.4 10.0 81 273-354 14-94 (95)
152 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-18 3.6E-23 134.2 9.3 85 96-181 20-104 (109)
153 2mss_A Protein (musashi1); RNA 99.8 4.6E-19 1.6E-23 126.6 6.7 75 103-178 1-75 (75)
154 2cq4_A RNA binding motif prote 99.8 4.8E-19 1.6E-23 137.6 7.3 85 273-358 23-107 (114)
155 2dgv_A HnRNP M, heterogeneous 99.8 2E-18 6.9E-23 128.6 10.4 82 98-181 5-86 (92)
156 2cqd_A RNA-binding region cont 99.8 1.5E-18 5.2E-23 135.3 10.1 83 98-181 14-96 (116)
157 2dgu_A Heterogeneous nuclear r 99.8 7.2E-18 2.4E-22 128.3 13.5 79 273-359 9-87 (103)
158 2cq1_A PTB-like protein L; RRM 99.8 5.6E-18 1.9E-22 127.3 12.6 81 273-359 13-95 (101)
159 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-18 4.3E-23 132.9 9.2 82 99-182 13-95 (104)
160 2dnq_A RNA-binding protein 4B; 99.8 4.3E-18 1.5E-22 126.2 11.8 78 273-358 6-83 (90)
161 2mss_A Protein (musashi1); RNA 99.8 7.1E-19 2.4E-23 125.6 7.2 75 277-352 1-75 (75)
162 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-18 1.1E-22 131.5 11.3 85 273-358 23-107 (109)
163 1x4d_A Matrin 3; structural ge 99.8 7E-19 2.4E-23 131.9 7.3 82 98-185 12-96 (102)
164 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.2E-19 2.5E-23 133.0 7.5 82 98-181 16-98 (100)
165 1wg5_A Heterogeneous nuclear r 99.8 5.7E-18 1.9E-22 129.0 12.4 84 273-358 13-97 (104)
166 2cqp_A RNA-binding protein 12; 99.8 6.7E-19 2.3E-23 132.9 7.1 83 98-180 12-94 (98)
167 2cqg_A TDP-43, TAR DNA-binding 99.8 6.6E-18 2.2E-22 128.6 12.7 84 273-358 13-96 (103)
168 2cq3_A RNA-binding protein 9; 99.8 4.3E-18 1.5E-22 129.6 11.7 84 97-182 11-94 (103)
169 1wex_A Hypothetical protein (r 99.8 5.6E-18 1.9E-22 128.1 12.1 80 273-358 13-94 (104)
170 2cpi_A CCR4-NOT transcription 99.8 2.8E-18 9.7E-23 132.4 10.6 84 274-357 14-103 (111)
171 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-18 6.1E-23 139.6 10.0 86 97-182 38-123 (139)
172 2cqp_A RNA-binding protein 12; 99.8 8.1E-19 2.8E-23 132.4 7.4 83 273-355 13-95 (98)
173 3ex7_B RNA-binding protein 8A; 99.8 1.8E-18 6.1E-23 137.1 9.6 84 98-181 19-102 (126)
174 1p1t_A Cleavage stimulation fa 99.8 1E-18 3.5E-23 133.5 7.9 82 100-181 7-88 (104)
175 3s7r_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 126.5 9.9 79 273-352 9-87 (87)
176 2hvz_A Splicing factor, argini 99.8 1.2E-18 4E-23 132.3 8.2 84 102-190 1-100 (101)
177 3n9u_C Cleavage and polyadenyl 99.8 1.6E-18 5.5E-23 141.7 9.5 82 275-356 55-138 (156)
178 2kt5_A RNA and export factor-b 99.8 3.4E-18 1.2E-22 134.9 10.9 85 98-183 32-116 (124)
179 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.2E-19 1.8E-23 127.1 5.6 76 102-178 1-76 (77)
180 1wg5_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 131.7 9.0 82 98-181 12-94 (104)
181 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-18 3.9E-23 131.9 7.7 82 273-356 17-99 (100)
182 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.5E-18 1.2E-22 140.7 11.3 84 98-181 36-119 (156)
183 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-18 3.4E-23 132.3 7.4 81 97-180 11-91 (102)
184 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.4E-18 1.5E-22 129.6 11.0 82 98-181 12-93 (103)
185 3ulh_A THO complex subunit 4; 99.8 3.4E-18 1.2E-22 131.3 10.3 80 273-353 27-106 (107)
186 2dgw_A Probable RNA-binding pr 99.8 3E-18 1E-22 127.3 9.7 81 98-181 7-87 (91)
187 1p1t_A Cleavage stimulation fa 99.8 1E-18 3.5E-23 133.5 7.2 85 274-358 7-91 (104)
188 2jwn_A Embryonic polyadenylate 99.8 3.1E-18 1.1E-22 135.2 10.2 82 275-357 36-117 (124)
189 2hgl_A HNRPF protein, heteroge 99.8 8.9E-19 3E-23 139.1 7.0 82 98-181 41-125 (136)
190 2fc9_A NCL protein; structure 99.8 8.2E-18 2.8E-22 127.6 12.1 82 272-357 12-93 (101)
191 2dgx_A KIAA0430 protein; RRM d 99.8 3.4E-18 1.2E-22 128.2 9.8 80 99-181 7-90 (96)
192 2cpy_A RNA-binding protein 12; 99.8 9.6E-19 3.3E-23 135.7 7.0 82 98-181 12-94 (114)
193 2krb_A Eukaryotic translation 99.8 1.2E-18 4E-23 126.4 6.9 74 101-176 1-81 (81)
194 2m2b_A RNA-binding protein 10; 99.8 1.3E-18 4.5E-23 138.5 7.9 83 99-182 21-109 (131)
195 1x4a_A Splicing factor, argini 99.8 6E-18 2.1E-22 130.3 11.3 82 98-182 19-100 (109)
196 2err_A Ataxin-2-binding protei 99.8 2.6E-18 8.9E-23 132.0 9.2 83 271-355 25-107 (109)
197 2do0_A HnRNP M, heterogeneous 99.8 5.4E-18 1.8E-22 131.7 11.1 82 98-180 12-93 (114)
198 2cqg_A TDP-43, TAR DNA-binding 99.8 5.9E-18 2E-22 128.9 11.0 83 98-182 12-94 (103)
199 2cq4_A RNA binding motif prote 99.8 1.5E-18 5.2E-23 134.8 7.8 80 101-181 25-104 (114)
200 1wez_A HnRNP H', FTP-3, hetero 99.8 1.9E-18 6.5E-23 130.8 8.0 81 273-356 13-93 (102)
201 1x4e_A RNA binding motif, sing 99.8 5.6E-19 1.9E-23 129.5 4.8 80 274-353 4-83 (85)
202 2nlw_A Eukaryotic translation 99.7 5.7E-18 1.9E-22 129.2 10.5 80 275-356 15-101 (105)
203 2cpj_A Non-POU domain-containi 99.7 3.4E-18 1.2E-22 129.1 9.2 85 98-188 12-96 (99)
204 2dgw_A Probable RNA-binding pr 99.7 5.3E-18 1.8E-22 126.0 9.9 80 274-356 9-88 (91)
205 2db1_A Heterogeneous nuclear r 99.7 1.5E-18 5.1E-23 135.3 7.2 81 98-180 14-97 (118)
206 2ki2_A SS-DNA binding protein 99.7 7.8E-19 2.7E-23 130.3 5.3 81 276-357 2-82 (90)
207 2ad9_A Polypyrimidine tract-bi 99.7 4.7E-18 1.6E-22 130.7 9.8 81 273-359 29-111 (119)
208 2dnn_A RNA-binding protein 12; 99.7 1.3E-18 4.5E-23 132.7 6.5 78 101-181 16-93 (109)
209 2hvz_A Splicing factor, argini 99.7 7.4E-18 2.5E-22 127.8 10.7 78 276-358 1-78 (101)
210 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.7E-22 135.2 12.3 82 271-352 59-140 (140)
211 2jvr_A Nucleolar protein 3; RN 99.7 4.6E-18 1.6E-22 129.8 9.5 77 275-355 28-105 (111)
212 2cpi_A CCR4-NOT transcription 99.7 3.1E-18 1.1E-22 132.1 8.6 86 98-183 12-103 (111)
213 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5E-23 124.7 6.3 76 276-352 1-76 (77)
214 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-17 4E-22 128.6 11.8 79 274-358 24-102 (109)
215 2dgt_A RNA-binding protein 30; 99.7 1.7E-17 5.9E-22 123.4 12.4 78 273-358 8-85 (92)
216 2dis_A Unnamed protein product 99.7 3.6E-18 1.2E-22 131.6 8.9 85 98-182 5-93 (109)
217 2a3j_A U1 small nuclear ribonu 99.7 8.1E-18 2.8E-22 131.9 11.0 83 273-358 27-113 (127)
218 2ki2_A SS-DNA binding protein 99.7 5.5E-19 1.9E-23 131.1 4.0 80 102-182 2-81 (90)
219 2ad9_A Polypyrimidine tract-bi 99.7 3.7E-18 1.3E-22 131.3 8.7 79 97-181 27-107 (119)
220 1x4b_A Heterogeneous nuclear r 99.7 4E-18 1.4E-22 132.9 9.0 81 101-182 27-107 (116)
221 2ek1_A RNA-binding protein 12; 99.7 9.8E-19 3.4E-23 131.2 5.3 80 275-354 15-94 (95)
222 2fc8_A NCL protein; structure 99.7 9.1E-18 3.1E-22 127.6 10.8 84 272-358 12-95 (102)
223 2cpy_A RNA-binding protein 12; 99.7 1.3E-18 4.4E-23 135.0 6.1 84 273-358 13-97 (114)
224 2err_A Ataxin-2-binding protei 99.7 4.4E-18 1.5E-22 130.7 9.0 84 96-181 24-107 (109)
225 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6E-18 2.1E-22 136.8 10.1 81 98-178 60-140 (140)
226 1why_A Hypothetical protein ri 99.7 1.8E-17 6E-22 124.7 11.9 78 274-357 16-95 (97)
227 2cq1_A PTB-like protein L; RRM 99.7 8.9E-18 3E-22 126.1 10.2 78 98-181 12-91 (101)
228 2cpj_A Non-POU domain-containi 99.7 1.2E-17 4.1E-22 126.2 11.0 81 272-358 12-92 (99)
229 2dnn_A RNA-binding protein 12; 99.7 7.3E-18 2.5E-22 128.5 9.7 81 274-357 15-95 (109)
230 2nlw_A Eukaryotic translation 99.7 4.1E-18 1.4E-22 130.0 8.2 80 100-181 14-100 (105)
231 1x4f_A Matrin 3; structural ge 99.7 2.3E-18 7.7E-23 131.0 6.5 84 98-187 22-108 (112)
232 2jwn_A Embryonic polyadenylate 99.7 6.2E-18 2.1E-22 133.5 9.1 80 101-181 36-115 (124)
233 2lea_A Serine/arginine-rich sp 99.7 1.6E-18 5.6E-23 138.4 5.8 84 98-181 44-127 (135)
234 2la4_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 126.1 10.8 80 95-180 21-100 (101)
235 2jvr_A Nucleolar protein 3; RN 99.7 5.1E-18 1.7E-22 129.6 8.2 81 96-180 23-104 (111)
236 2cpd_A Apobec-1 stimulating pr 99.7 4.7E-17 1.6E-21 122.9 13.4 78 272-357 12-91 (99)
237 1iqt_A AUF1, heterogeneous nuc 99.7 2.2E-18 7.4E-23 123.1 5.7 75 103-178 1-75 (75)
238 1wex_A Hypothetical protein (r 99.7 8.3E-18 2.8E-22 127.2 9.2 79 98-182 12-92 (104)
239 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.8E-23 132.6 5.5 82 98-181 8-92 (107)
240 1x5o_A RNA binding motif, sing 99.7 1.1E-17 3.9E-22 129.9 10.2 82 98-180 22-111 (114)
241 2a3j_A U1 small nuclear ribonu 99.7 9.4E-18 3.2E-22 131.6 9.7 82 98-182 26-111 (127)
242 2kn4_A Immunoglobulin G-bindin 99.7 6.7E-18 2.3E-22 139.4 9.4 84 98-181 67-150 (158)
243 1x5o_A RNA binding motif, sing 99.7 1.8E-17 6.1E-22 128.7 11.3 82 273-355 23-112 (114)
244 2hgn_A Heterogeneous nuclear r 99.7 1.3E-18 4.4E-23 138.6 4.8 82 273-357 44-125 (139)
245 2lcw_A RNA-binding protein FUS 99.6 1.9E-19 6.4E-24 140.4 0.0 85 274-358 6-98 (116)
246 1wf1_A RNA-binding protein RAL 99.7 2E-17 6.9E-22 127.5 11.4 77 274-358 26-103 (110)
247 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-18 7.5E-23 130.8 5.9 84 273-358 15-98 (101)
248 1x4f_A Matrin 3; structural ge 99.7 8.7E-18 3E-22 127.7 9.0 82 272-359 22-106 (112)
249 2dnp_A RNA-binding protein 14; 99.7 2.9E-17 9.9E-22 121.6 11.6 77 273-357 7-83 (90)
250 2dha_A FLJ20171 protein; RRM d 99.7 3.1E-18 1.1E-22 133.4 6.6 81 98-180 20-104 (123)
251 2krb_A Eukaryotic translation 99.7 4.8E-18 1.6E-22 123.1 6.8 72 276-349 2-80 (81)
252 1wel_A RNA-binding protein 12; 99.7 1.5E-18 5E-23 136.9 4.4 83 98-181 22-104 (124)
253 2kvi_A Nuclear polyadenylated 99.7 8.2E-18 2.8E-22 126.2 8.2 78 273-358 8-86 (96)
254 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-17 3.9E-22 128.0 9.1 79 271-357 27-105 (108)
255 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-18 1.3E-22 121.8 6.0 75 277-352 1-75 (75)
256 2cpx_A Hypothetical protein FL 99.7 2.4E-17 8.3E-22 128.2 11.0 83 273-359 23-109 (115)
257 2xnq_A Nuclear polyadenylated 99.7 3.3E-17 1.1E-21 122.9 11.3 76 272-355 19-95 (97)
258 2dnq_A RNA-binding protein 4B; 99.7 2.6E-17 8.9E-22 121.9 10.4 77 98-182 5-81 (90)
259 2ytc_A PRE-mRNA-splicing facto 99.7 2.3E-17 7.9E-22 120.8 10.1 75 273-353 10-85 (85)
260 2fc9_A NCL protein; structure 99.7 1.4E-17 4.8E-22 126.3 9.0 81 98-182 12-92 (101)
261 1wg1_A KIAA1579 protein, homol 99.7 1.3E-17 4.3E-22 122.9 8.5 84 99-189 3-86 (88)
262 2hgm_A HNRPF protein, heteroge 99.7 6.7E-18 2.3E-22 131.7 7.3 81 97-180 38-120 (126)
263 1whx_A Hypothetical protein ri 99.7 2.8E-17 9.6E-22 126.5 10.6 77 275-357 10-86 (111)
264 1why_A Hypothetical protein ri 99.7 2.6E-17 8.8E-22 123.8 10.1 78 98-181 14-93 (97)
265 2ytc_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.8E-22 120.6 9.6 76 98-179 9-85 (85)
266 2hgl_A HNRPF protein, heteroge 99.7 4.6E-18 1.6E-22 134.9 5.9 81 274-356 43-126 (136)
267 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-17 4.7E-22 124.2 8.2 78 274-358 7-86 (93)
268 2cq2_A Hypothetical protein LO 99.7 3.5E-17 1.2E-21 124.4 10.3 80 274-359 24-110 (114)
269 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.7E-23 132.7 3.0 82 273-356 9-93 (107)
270 2e5j_A Methenyltetrahydrofolat 99.7 2.3E-17 7.9E-22 124.0 9.2 79 273-356 17-95 (97)
271 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-18 5.1E-23 131.7 2.6 82 98-181 14-95 (101)
272 2xnq_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 122.0 10.7 78 96-181 17-95 (97)
273 1x4g_A Nucleolysin TIAR; struc 99.7 3.8E-17 1.3E-21 125.7 10.4 81 97-183 21-101 (109)
274 1nu4_A U1A RNA binding domain; 99.7 1.6E-17 5.6E-22 125.0 8.1 82 273-357 6-91 (97)
275 1fjc_A Nucleolin RBD2, protein 99.7 2E-17 6.7E-22 124.2 8.5 81 273-358 14-94 (96)
276 2db1_A Heterogeneous nuclear r 99.7 8.2E-18 2.8E-22 131.1 6.5 81 274-356 16-99 (118)
277 2hgn_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 135.5 5.0 81 98-181 43-123 (139)
278 2fc8_A NCL protein; structure 99.7 2.5E-17 8.7E-22 125.1 9.0 83 97-182 11-93 (102)
279 1nu4_A U1A RNA binding domain; 99.7 1.3E-17 4.6E-22 125.5 7.4 82 98-182 5-90 (97)
280 3lqv_A PRE-mRNA branch site pr 99.7 4E-17 1.4E-21 127.0 10.3 82 274-358 7-88 (115)
281 2j8a_A Histone-lysine N-methyl 99.7 1.2E-17 4E-22 127.0 6.9 79 102-180 3-95 (136)
282 1x4c_A Splicing factor, argini 99.7 4.5E-17 1.5E-21 125.0 10.3 78 98-182 12-94 (108)
283 3zzy_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 126.7 10.2 80 274-358 27-109 (130)
284 2diu_A KIAA0430 protein; struc 99.7 6.2E-17 2.1E-21 116.2 10.0 80 98-187 6-90 (96)
285 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-17 8.9E-22 123.7 8.6 79 98-181 16-94 (97)
286 1sjr_A Polypyrimidine tract-bi 99.7 8.9E-17 3E-21 129.9 12.0 80 274-357 45-126 (164)
287 2la4_A Nuclear and cytoplasmic 99.7 2.2E-17 7.4E-22 125.3 7.9 75 275-355 27-101 (101)
288 2lcw_A RNA-binding protein FUS 99.5 9.2E-19 3.1E-23 136.4 0.0 84 99-182 5-96 (116)
289 1wel_A RNA-binding protein 12; 99.7 7.5E-18 2.6E-22 132.8 5.2 83 273-356 23-105 (124)
290 2f3j_A RNA and export factor b 99.7 3.3E-17 1.1E-21 136.9 9.4 85 98-183 85-169 (177)
291 2cpx_A Hypothetical protein FL 99.7 5.8E-18 2E-22 131.8 4.5 85 98-182 22-106 (115)
292 2jvo_A Nucleolar protein 3; nu 99.7 6.7E-17 2.3E-21 123.7 10.2 78 96-181 26-103 (108)
293 3beg_B Splicing factor, argini 99.7 6.9E-17 2.3E-21 125.3 10.1 76 275-357 16-96 (115)
294 1whx_A Hypothetical protein ri 99.7 2.4E-17 8E-22 127.0 7.3 75 100-180 9-83 (111)
295 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6E-21 113.8 11.0 74 275-358 8-87 (96)
296 2hgm_A HNRPF protein, heteroge 99.7 2.4E-17 8.1E-22 128.6 7.1 80 274-356 41-122 (126)
297 2dgt_A RNA-binding protein 30; 99.7 8.3E-17 2.8E-21 119.7 9.7 78 97-182 6-83 (92)
298 2dnp_A RNA-binding protein 14; 99.7 8.4E-17 2.9E-21 119.1 9.5 77 97-181 5-81 (90)
299 2xs2_A Deleted in azoospermia- 99.7 1.2E-17 4.1E-22 126.9 4.9 80 100-182 8-87 (102)
300 2e44_A Insulin-like growth fac 99.7 1.5E-16 5.1E-21 119.4 10.8 80 274-357 14-94 (96)
301 1x5p_A Negative elongation fac 99.7 4E-16 1.4E-20 117.2 13.0 78 273-358 13-90 (97)
302 2kvi_A Nuclear polyadenylated 99.7 5.9E-17 2E-21 121.5 8.1 77 97-181 6-83 (96)
303 2e5g_A U6 snRNA-specific termi 99.7 1.5E-16 5E-21 118.8 10.0 78 274-357 7-84 (94)
304 2dgu_A Heterogeneous nuclear r 99.7 1.2E-16 4.3E-21 121.4 9.6 77 98-182 8-84 (103)
305 2e5g_A U6 snRNA-specific termi 99.7 1.8E-16 6.3E-21 118.3 10.4 78 98-181 5-82 (94)
306 2f3j_A RNA and export factor b 99.7 1.1E-16 3.7E-21 133.8 10.1 85 272-357 85-169 (177)
307 1fjc_A Nucleolin RBD2, protein 99.7 2.4E-17 8.2E-22 123.8 5.4 78 99-181 14-91 (96)
308 2e5i_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 121.3 11.9 78 274-357 24-104 (124)
309 2cpd_A Apobec-1 stimulating pr 99.7 2.6E-16 8.8E-21 118.8 10.8 77 98-182 12-90 (99)
310 2j8a_A Histone-lysine N-methyl 99.7 5.8E-17 2E-21 123.2 7.0 79 276-354 3-95 (136)
311 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-16 4.5E-21 123.6 9.3 78 99-179 6-86 (114)
312 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.5E-21 117.5 8.7 76 275-357 5-80 (88)
313 2xs2_A Deleted in azoospermia- 99.7 5E-17 1.7E-21 123.5 6.5 81 274-357 8-88 (102)
314 2dha_A FLJ20171 protein; RRM d 99.7 2.5E-17 8.5E-22 128.3 4.8 80 276-357 24-107 (123)
315 2i2y_A Fusion protein consists 99.7 1.2E-16 4E-21 130.6 9.0 79 98-181 70-148 (150)
316 2e44_A Insulin-like growth fac 99.7 9.5E-17 3.2E-21 120.5 7.9 79 99-181 13-92 (96)
317 2cq2_A Hypothetical protein LO 99.7 1.1E-16 3.8E-21 121.6 8.1 78 96-179 20-104 (114)
318 3d2w_A TAR DNA-binding protein 99.7 3.2E-16 1.1E-20 115.3 10.0 75 274-357 10-86 (89)
319 4f02_A Polyadenylate-binding p 99.7 2.1E-16 7E-21 137.2 10.5 84 274-357 14-97 (213)
320 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.5E-21 118.9 7.9 77 98-181 5-83 (93)
321 3pgw_A U1-A; protein-RNA compl 99.7 3.1E-15 1.1E-19 135.9 18.5 82 273-357 7-92 (282)
322 1wf1_A RNA-binding protein RAL 99.7 2.1E-16 7.1E-21 121.7 9.0 75 99-181 25-100 (110)
323 2pe8_A Splicing factor 45; RRM 99.7 4.6E-16 1.6E-20 117.7 10.6 83 98-180 5-93 (105)
324 3md3_A Nuclear and cytoplasmic 99.7 3.9E-16 1.3E-20 129.9 11.2 82 98-179 84-165 (166)
325 2pe8_A Splicing factor 45; RRM 99.7 4.4E-16 1.5E-20 117.8 10.3 83 274-356 7-95 (105)
326 3egn_A RNA-binding protein 40; 99.7 3.1E-17 1.1E-21 132.9 4.1 85 274-358 44-133 (143)
327 1b7f_A Protein (SXL-lethal pro 99.7 3.6E-16 1.2E-20 130.5 10.3 83 275-357 3-85 (168)
328 1fxl_A Paraneoplastic encephal 99.7 4.6E-16 1.6E-20 129.6 10.5 83 275-357 2-84 (167)
329 1x5p_A Negative elongation fac 99.7 6.7E-16 2.3E-20 116.0 10.3 77 98-182 12-88 (97)
330 3d2w_A TAR DNA-binding protein 99.6 4.2E-16 1.4E-20 114.7 8.8 76 97-181 7-84 (89)
331 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-16 8E-21 116.2 7.4 77 275-358 5-81 (88)
332 2g4b_A Splicing factor U2AF 65 99.6 4.4E-16 1.5E-20 130.5 10.0 80 99-178 92-171 (172)
333 1sjr_A Polypyrimidine tract-bi 99.6 5.7E-16 1.9E-20 125.2 9.8 78 100-181 45-124 (164)
334 3pgw_S U1-70K; protein-RNA com 99.6 4.2E-16 1.5E-20 148.8 10.5 83 99-181 100-182 (437)
335 2hzc_A Splicing factor U2AF 65 99.6 4E-16 1.4E-20 114.7 8.1 72 99-177 4-86 (87)
336 3tyt_A Heterogeneous nuclear r 99.6 7E-16 2.4E-20 132.4 10.8 77 275-356 4-81 (205)
337 3egn_A RNA-binding protein 40; 99.6 3.2E-16 1.1E-20 126.8 8.3 81 98-181 42-130 (143)
338 2qfj_A FBP-interacting repress 99.6 7.4E-16 2.5E-20 134.2 10.8 83 99-181 123-205 (216)
339 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4.1E-20 118.2 10.7 80 274-356 7-89 (114)
340 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.6E-20 129.8 11.4 120 235-356 64-188 (193)
341 3zzy_A Polypyrimidine tract-bi 99.6 7.9E-16 2.7E-20 119.7 9.5 78 100-182 27-107 (130)
342 3beg_B Splicing factor, argini 99.6 3.7E-16 1.3E-20 121.1 7.2 70 99-175 14-83 (115)
343 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.7E-20 111.8 9.8 71 274-351 5-86 (87)
344 2yh0_A Splicing factor U2AF 65 99.6 9.5E-16 3.3E-20 131.6 10.2 84 98-181 111-194 (198)
345 2cjk_A Nuclear polyadenylated 99.6 3.7E-16 1.3E-20 130.2 6.6 80 101-181 87-166 (167)
346 2e5i_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 116.8 10.4 74 103-182 27-103 (124)
347 2bz2_A Negative elongation fac 99.6 1.1E-15 3.7E-20 119.3 8.6 78 273-358 37-114 (121)
348 1l3k_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 129.8 10.3 83 99-182 102-184 (196)
349 3u1l_A PRE-mRNA-splicing facto 99.6 2.6E-15 8.9E-20 129.9 10.8 83 270-358 129-232 (240)
350 3v4m_A Splicing factor U2AF 65 99.6 3.2E-15 1.1E-19 113.2 9.6 82 274-355 4-97 (105)
351 1wf0_A TDP-43, TAR DNA-binding 99.6 8E-16 2.7E-20 113.3 5.3 77 99-182 3-79 (88)
352 2bz2_A Negative elongation fac 99.6 3.2E-15 1.1E-19 116.6 8.9 77 97-181 35-111 (121)
353 2voo_A Lupus LA protein; RNA-b 99.6 3.7E-15 1.3E-19 126.4 9.9 78 101-180 109-186 (193)
354 2dit_A HIV TAT specific factor 99.6 1.2E-14 4.3E-19 111.9 11.7 82 273-358 13-105 (112)
355 3nmr_A Cugbp ELAV-like family 99.6 5.9E-15 2E-19 123.9 10.1 80 99-179 93-175 (175)
356 2dit_A HIV TAT specific factor 99.6 1.6E-14 5.5E-19 111.3 10.4 85 96-184 10-105 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.5 7.9E-15 2.7E-19 126.9 8.2 78 98-181 131-229 (240)
358 1fje_B Nucleolin RBD12, protei 99.5 8.1E-15 2.8E-19 123.1 8.1 77 100-181 98-174 (175)
359 2adc_A Polypyrimidine tract-bi 99.5 2.3E-14 8E-19 125.7 11.3 80 273-357 32-112 (229)
360 3v4m_A Splicing factor U2AF 65 99.5 1.6E-14 5.4E-19 109.4 8.2 81 100-180 4-96 (105)
361 3sde_A Paraspeckle component 1 99.5 2.7E-14 9.3E-19 127.8 10.7 80 270-355 17-96 (261)
362 3ue2_A Poly(U)-binding-splicin 99.5 1.6E-14 5.5E-19 111.3 7.2 82 274-355 19-109 (118)
363 1jmt_A Splicing factor U2AF 35 99.5 7.3E-15 2.5E-19 111.1 4.8 72 280-352 20-103 (104)
364 1qm9_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 121.0 10.4 77 276-357 4-81 (198)
365 3ue2_A Poly(U)-binding-splicin 99.5 3.4E-14 1.2E-18 109.5 7.9 82 99-180 18-108 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.1E-13 1E-17 100.8 12.2 75 276-357 11-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.5 1.2E-14 4E-19 109.9 4.1 72 106-178 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.4 3.5E-13 1.2E-17 103.1 9.2 80 273-356 5-94 (114)
369 3tht_A Alkylated DNA repair pr 99.4 1.5E-12 5.2E-17 118.8 10.5 76 272-353 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.4 2.3E-12 7.9E-17 98.5 9.1 78 98-179 4-91 (114)
371 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.3E-12 1.8E-16 94.0 10.4 74 101-181 10-90 (100)
372 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 7.9E-17 117.6 8.3 77 97-179 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 2.8E-11 9.4E-16 86.1 9.1 73 274-355 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 8.4E-11 2.9E-15 89.7 10.2 75 273-353 16-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 6.8E-11 2.3E-15 90.2 8.3 75 99-179 16-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.2 8.3E-11 2.8E-15 83.7 7.3 73 99-180 5-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 2.8E-10 9.4E-15 81.3 5.7 72 274-354 14-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 8.8E-10 3E-14 78.7 6.1 74 97-179 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.8E-14 93.2 8.0 69 287-355 141-213 (222)
380 3dxb_A Thioredoxin N-terminall 98.9 4E-09 1.4E-13 91.6 8.2 83 98-180 121-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 6E-08 2E-12 70.5 7.7 71 276-352 22-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 4.2E-07 1.4E-11 66.1 10.0 72 100-177 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.4 3E-06 1E-10 61.3 10.7 87 100-195 7-100 (104)
384 1wey_A Calcipressin 1; structu 98.1 6.8E-06 2.3E-10 59.8 6.9 74 276-355 6-84 (104)
385 1wey_A Calcipressin 1; structu 97.9 2.5E-05 8.4E-10 56.9 5.8 74 101-180 5-83 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.00027 9.3E-09 51.1 10.1 75 275-358 8-87 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00017 5.7E-09 51.7 8.0 68 102-169 2-71 (91)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00029 1E-08 50.4 9.0 78 276-353 2-86 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.4 0.0015 5.2E-08 48.9 9.8 72 274-353 23-95 (119)
390 1wwh_A Nucleoporin 35, nucleop 97.3 0.00065 2.2E-08 50.9 7.2 72 100-179 23-95 (119)
391 1whv_A Poly(A)-specific ribonu 97.3 0.00053 1.8E-08 48.9 6.0 54 276-338 17-70 (100)
392 1whv_A Poly(A)-specific ribonu 97.3 0.0011 3.7E-08 47.4 7.4 58 98-164 13-70 (100)
393 3ctr_A Poly(A)-specific ribonu 97.2 0.00051 1.8E-08 49.2 5.0 54 276-338 7-60 (101)
394 2l08_A Regulator of nonsense t 97.1 0.0016 5.5E-08 46.8 6.6 78 276-353 10-94 (97)
395 2l08_A Regulator of nonsense t 96.9 0.0011 3.8E-08 47.6 4.6 70 100-169 8-79 (97)
396 3p3d_A Nucleoporin 53; structu 96.6 0.0029 9.9E-08 48.1 5.0 77 276-354 8-98 (132)
397 3ctr_A Poly(A)-specific ribonu 96.5 0.0029 1E-07 45.3 4.1 53 103-164 8-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 96.0 0.0034 1.2E-07 59.3 3.5 55 101-161 53-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.7 0.012 4.1E-07 44.7 4.5 78 100-179 6-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.6 0.0058 2E-07 57.7 3.1 55 276-336 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 88.7 1.3 4.4E-05 42.7 8.4 56 274-338 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.7 1.4 4.8E-05 42.5 7.9 56 101-165 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 73.1 8.8 0.0003 25.8 5.7 60 285-353 11-75 (76)
404 4eyt_A Telomerase associated p 70.3 24 0.00081 24.3 8.7 57 100-164 11-67 (129)
405 4eyt_A Telomerase associated p 69.1 25 0.00086 24.2 8.2 54 276-337 13-66 (129)
406 2g0c_A ATP-dependent RNA helic 53.2 42 0.0014 22.3 6.1 67 103-178 2-74 (76)
407 4e8u_A Putative uncharacterize 40.3 28 0.00097 27.7 3.9 51 276-329 13-74 (172)
408 4e8u_A Putative uncharacterize 40.0 52 0.0018 26.2 5.4 55 103-160 14-80 (172)
409 3l9o_A ATP-dependent RNA helic 27.5 13 0.00044 39.7 0.0 20 143-162 227-246 (1108)
410 3ts2_A Protein LIN-28 homolog 25.3 17 0.00059 28.2 0.4 28 290-325 2-29 (148)
411 2i9x_A Putative septation prot 25.1 86 0.0029 21.7 3.8 25 127-151 5-29 (87)
412 3l9o_A ATP-dependent RNA helic 25.0 15 0.00052 39.1 0.0 13 148-160 269-281 (1108)
413 3j21_T 50S ribosomal protein L 24.5 1.8E+02 0.006 20.1 5.4 56 278-336 25-82 (86)
414 3fry_A Probable copper-exporti 24.3 1.4E+02 0.0049 18.9 5.8 54 102-162 7-60 (73)
415 2ia9_A Putative septation prot 22.0 1E+02 0.0035 22.0 3.8 25 127-151 5-29 (100)
416 2i9z_A Putative septation prot 21.7 1.1E+02 0.0037 22.1 3.9 25 127-151 5-29 (105)
417 3lpe_A Putative transcription 21.5 2.1E+02 0.0071 19.8 6.6 33 302-339 40-72 (92)
418 3tj1_A RNA polymerase I-specif 20.3 22 0.00076 35.0 0.1 9 117-125 385-393 (649)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.8e-46 Score=340.52 Aligned_cols=248 Identities=19% Similarity=0.350 Sum_probs=227.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+++|||+|||+++|+++|+++|+.|| |..|.+ ++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3579999999999999999999999999 999988 557999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
....+|||+|||+.+++++|+++|+.||. |..+.++.+ ..++.++|||||.|.+.++|..|+..+++. .+.++.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 99999999999999999999999999999 999999988 678999999999999999999999999986 55789999
Q ss_pred cccCCCCCCCCCCCCcccEEEEecCCCCC-CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc
Q 014086 259 VSWADPRNVDSSGASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (431)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l 337 (431)
+.|+.+..... .....++|||+|||..+ |+++|+++|+.||.|..|+|+++.. +.++|||||+|.+.++|.+|+..|
T Consensus 169 v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 169 VHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-CCEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-CCcccEEEEEeCCHHHHHHHHHHh
Confidence 99988765432 33456899999999995 9999999999999999999999874 556899999999999999999999
Q ss_pred CCCccCCcEEEEEeccCCCCCC
Q 014086 338 EKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 338 ~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
||..|.|++|+|.|+.+...++
T Consensus 247 ~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TTCEETTEECEEEECCSSSCHH
T ss_pred CCCccCCeEEEEEEecCCCccc
Confidence 9999999999999999877643
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.9e-46 Score=340.43 Aligned_cols=251 Identities=19% Similarity=0.334 Sum_probs=214.8
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
...++..++|||+|||+++|+++|+++|+.||.|.+|+|+++..+ ++|||||+|.+.++|.+|+ .+++..+.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEE
Confidence 344567899999999999999999999999999999999998643 5899999999999999999 5999999999999
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhC-CCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccC
Q 014086 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (431)
Q Consensus 175 v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (431)
|.++. .++|||+|||+.+++++|+++|+.|| . |..+.++.+ ..+.++|||||.|.+.++|..|+..+++. .+.
T Consensus 112 v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 185 (292)
T 2ghp_A 112 VSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSL--RFNTSRRFAYIDVTSKEDARYCVEKLNGL--KIE 185 (292)
T ss_dssp EEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred EEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeC--CCCCcceEEEEEECCHHHHHHHHHHhCCC--EeC
Confidence 99874 67899999999999999999999999 7 999999887 33889999999999999999999999986 457
Q ss_pred CCCCccccCCCCCCCC---CCCCcccEEEEecCCCC-CCHHHHHHHHhccccEEEEEecCCCC-CCCcCCEEEEEeCCHH
Q 014086 254 TNAPTVSWADPRNVDS---SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKP-GQEKNRIGFVHFAERS 328 (431)
Q Consensus 254 ~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~~rg~afV~F~~~~ 328 (431)
++.+.+.|+.+..... ......++|||+|||.. +|+++|+++|+.||.|..|+|+++.. ++.++|||||+|.+.+
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 8999999987765432 23455689999999999 99999999999999999999999887 4666999999999999
Q ss_pred HHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 329 SAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 329 ~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
+|.+|+ .|||..|.|++|.|.||.++
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.8e-37 Score=268.56 Aligned_cols=171 Identities=25% Similarity=0.403 Sum_probs=152.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
..... .
T Consensus 94 ~~~~~----------------------------------------------------------~---------------- 99 (213)
T 4f02_A 94 RDPSL----------------------------------------------------------R---------------- 99 (213)
T ss_dssp CCTHH----------------------------------------------------------H----------------
T ss_pred ccccc----------------------------------------------------------c----------------
Confidence 32100 0
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
.....+|||+|||+.+|+++|+++|+.||.|..|+|+++..+ ++|||||+|.+.++|.+|+..|||
T Consensus 100 ------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 ------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHhCC
Confidence 001158999999999999999999999999999999987643 589999999999999999999999
Q ss_pred CccCCcEEEEEeccCCCCC
Q 014086 340 YELDGQALECSLAKPQADQ 358 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~ 358 (431)
..|+|++|+|.+|.++..+
T Consensus 166 ~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp CEETTEECEEEECCCHHHH
T ss_pred CEECCEEEEEEEcCCCccc
Confidence 9999999999999876543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.1e-35 Score=254.79 Aligned_cols=181 Identities=20% Similarity=0.401 Sum_probs=152.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
..+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||+ +++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeee
Confidence 345568999999999999999999999999999999999999999999999999999999999996 5999999999999
Q ss_pred ccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCC
Q 014086 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (431)
Q Consensus 176 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (431)
.++....... .
T Consensus 87 ~~~~~~~~~~-------------------------------------~-------------------------------- 97 (196)
T 1l3k_A 87 KRAVSREDSQ-------------------------------------R-------------------------------- 97 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCccccc-------------------------------------c--------------------------------
Confidence 8765321100 0
Q ss_pred CCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHH
Q 014086 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (431)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~ 335 (431)
.......++|||+|||..+|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|.+|+.
T Consensus 98 -------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 98 -------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred -------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 0001122699999999999999999999999999999999998888889999999999999999998
Q ss_pred hcCCCccCCcEEEEEeccCCCCCCC
Q 014086 336 NTEKYELDGQALECSLAKPQADQKS 360 (431)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~~~~~~ 360 (431)
. ++..|+|+.|.|.+|.++.....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp C-SCCEETTEECEEEECC-------
T ss_pred h-CCcEECCEEEEEEecCChhHhcc
Confidence 6 79999999999999998777543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=243.33 Aligned_cols=166 Identities=21% Similarity=0.361 Sum_probs=150.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
++|||+|||+++|+++|+++|++||.|.+|++++++. ++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999865 789999999999999999999999999999999999876532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
.......+|||+|||..+|+++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..|||..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 001123799999999999999999999999999999999998888889999999999999999999999999
Q ss_pred cCCcEEEEEeccC
Q 014086 342 LDGQALECSLAKP 354 (431)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (431)
|+|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999974
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.1e-34 Score=243.89 Aligned_cols=165 Identities=26% Similarity=0.456 Sum_probs=152.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
.+++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998765
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
....++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|+..|||
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01126899999999999999999999999999999999987788899999999999999999999999
Q ss_pred CccCC--cEEEEEec
Q 014086 340 YELDG--QALECSLA 352 (431)
Q Consensus 340 ~~~~g--~~l~v~~a 352 (431)
..|.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.8e-34 Score=241.14 Aligned_cols=164 Identities=24% Similarity=0.464 Sum_probs=150.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
+++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999987653
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccc
Q 014086 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (431)
Q Consensus 181 ~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (431)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred cCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC
Q 014086 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (431)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~ 340 (431)
....++|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011268999999999999999999999999999999999888888999999999999999999999999
Q ss_pred ccCCcE--EEEEec
Q 014086 341 ELDGQA--LECSLA 352 (431)
Q Consensus 341 ~~~g~~--l~v~~a 352 (431)
.|.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888886
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.9e-34 Score=249.62 Aligned_cols=181 Identities=21% Similarity=0.386 Sum_probs=153.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999997665
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
..... ..... .....
T Consensus 107 ~~~~~----------~~~~~----------------------------------------~~~~~--------------- 121 (216)
T 2qfj_A 107 NIGQA----------QPIID----------------------------------------QLAEE--------------- 121 (216)
T ss_dssp CCGGG----------HHHHH----------------------------------------HHHHH---------------
T ss_pred Ccccc----------chhhh----------------------------------------hhhcc---------------
Confidence 32110 00000 00000
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
....++|||+|||..+|+++|+++|++||.|..|+|+++..++.++|||||+|.+.++|.+|+..|||
T Consensus 122 ------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 122 ------------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp ------------HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 01126999999999999999999999999999999999988888899999999999999999999999
Q ss_pred CccCCcEEEEEeccCCCC
Q 014086 340 YELDGQALECSLAKPQAD 357 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~ 357 (431)
..|+|+.|+|.|+.+...
T Consensus 190 ~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 190 FDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp CBCSSSBCEEEECSSCSS
T ss_pred CEeCCcEEEEEEecCCCC
Confidence 999999999999987644
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=9.3e-35 Score=244.04 Aligned_cols=165 Identities=19% Similarity=0.441 Sum_probs=149.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999887654
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3210
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
....++|||+|||..+|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+. +|+
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012689999999999999999999999999999999998888889999999999999999998 899
Q ss_pred CccCCcEEEEEeccCC
Q 014086 340 YELDGQALECSLAKPQ 355 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~ 355 (431)
..|.|++|.|.||.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.5e-33 Score=236.31 Aligned_cols=166 Identities=20% Similarity=0.402 Sum_probs=144.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCC--CCcceEEEEecCHHHHHHHHHHhCCCccC---CeEee
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~e~a~~al~~l~~~~~~---g~~i~ 174 (431)
++++|||+|||+++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999998765 45555
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCC
Q 014086 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (431)
Q Consensus 175 v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (431)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 544332110
Q ss_pred CCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
.....++|||+|||..+|+++|+++|++||.|..|+++++.. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 011236899999999999999999999999999999999875 556899999999999999999
Q ss_pred HhcCCCccC---CcEEEEEecc
Q 014086 335 KNTEKYELD---GQALECSLAK 353 (431)
Q Consensus 335 ~~l~~~~~~---g~~l~v~~a~ 353 (431)
..|||..+. +++|+|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999984
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4e-32 Score=234.63 Aligned_cols=183 Identities=21% Similarity=0.360 Sum_probs=148.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
.+++|||+|||+++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47999999999999999999999999 5 6777766 456999999999999999999 8999999
Q ss_pred CCeEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCC
Q 014086 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (431)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (431)
.|+.|+|.++......... ....
T Consensus 76 ~g~~i~v~~~~~~~~~~~~---------------------------------~~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM---------------------------------SENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS---------------------------------SSCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC---------------------------------cCCC------------------------
Confidence 9999999887643210000 0000
Q ss_pred CcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHH
Q 014086 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (431)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~ 328 (431)
. ...+...........++|||+|||..+|+++|+++|++||.|..|+++++..++.++|||||+|.+.+
T Consensus 99 --~---------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 --S---------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp --S---------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred --c---------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 0 00000001112234589999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 329 SAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 329 ~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
+|.+|+..|||..|+|+.|+|.|+.+...
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999987654
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.8e-32 Score=230.04 Aligned_cols=159 Identities=21% Similarity=0.413 Sum_probs=142.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
++++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 7 78888774 45899999999999999999 8999999
Q ss_pred CCeEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCC
Q 014086 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (431)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (431)
.|+.|+|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999986542110
Q ss_pred CcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHH
Q 014086 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (431)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~ 328 (431)
....++|||+|||..+|+++|+++|++||.|..|+++++..++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 001268999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHhcCCCccCCcEEEEEecc
Q 014086 329 SAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 329 ~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+|.+|+..|||..|+|++|.|.||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999984
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.7e-33 Score=235.47 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=143.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
..+...++|||+|||+++|+++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34667899999999999999999999999998766 34455567899999999999999999999 59999999999999
Q ss_pred ccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCC
Q 014086 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (431)
Q Consensus 176 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (431)
.++.....
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 88764210
Q ss_pred CCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHH
Q 014086 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (431)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~ 335 (431)
......++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 94 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 94 --------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp --------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred --------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 001123799999999999999999999999998776 3445568999999999999999999
Q ss_pred hcCCCccCCcEEEEEeccCC
Q 014086 336 NTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 336 ~l~~~~~~g~~l~v~~a~~~ 355 (431)
.|||..|.|+.|+|.||.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2e-31 Score=229.61 Aligned_cols=194 Identities=18% Similarity=0.296 Sum_probs=143.8
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIP-HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
++++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3899999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
..... .|.... + ...+.. .+-.|.... . .+
T Consensus 78 ~~~~~-----~p~~~~-----------~------------~~~~~~---~~~~~~~~~---------------~-~r--- 107 (205)
T 3tyt_A 78 KQPAI-----MPGQSY-----------G------------LEDGSC---SYKDFSESR---------------N-NR--- 107 (205)
T ss_dssp SCSCC-----CCCSCC-----------B------------CTTSCB---SEEECTTCT---------------T-CS---
T ss_pred cCCcc-----CCCccc-----------c------------cccCCc---cccccCCCc---------------c-cc---
Confidence 65422 111000 0 000000 000000000 0 00
Q ss_pred cccCCCC-CCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccE--EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHH
Q 014086 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (431)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~ 335 (431)
+..+. ........++++|||+|||+.+|+++|+++|++||.| ..|+++.++ +. ++|||||+|.+.++|.+||.
T Consensus 108 --~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 108 --FSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SE-RSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp --CSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SS-SSEEEEEECSSHHHHHHHHH
T ss_pred --ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CC-CceEEEEEeCCHHHHHHHHH
Confidence 00000 0000011234799999999999999999999999999 899998886 33 36999999999999999999
Q ss_pred hcCCCccCCc----EEEEEec
Q 014086 336 NTEKYELDGQ----ALECSLA 352 (431)
Q Consensus 336 ~l~~~~~~g~----~l~v~~a 352 (431)
.|||..|.|+ ++.|+||
T Consensus 184 ~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTTCEECCSSSSSCEECEEE
T ss_pred HhCCCCccCCCCCcceEEEec
Confidence 9999999886 6777775
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=5.7e-31 Score=240.19 Aligned_cols=246 Identities=16% Similarity=0.241 Sum_probs=152.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
.+.+++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecC--ChhHHHHH---HHHhCCC
Q 014086 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYH--NHKCAEYS---RQKMTNP 248 (431)
Q Consensus 174 ~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~--~~~~a~~a---~~~~~~~ 248 (431)
+|.++............. ..+......-..... ...................+.+.-. ....+..+ ...+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGT-FVERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCC-cccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999987554321111110 000000000000000 0000000000000000000000000 00000000 0000000
Q ss_pred CcccC------CCC-CccccC-------------CCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEec
Q 014086 249 NFKLG------TNA-PTVSWA-------------DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (431)
Q Consensus 249 ~~~~~------~~~-~~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (431)
.-... ... ....+. .+...........++|||+|||..+|+++|+++|++||.|.+|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 000 000000 0000011223356899999999999999999999999999999999
Q ss_pred CCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEecc
Q 014086 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALECSLAK 353 (431)
Q Consensus 309 ~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~-g~~l~v~~a~ 353 (431)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 765 689999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=6.1e-31 Score=231.90 Aligned_cols=194 Identities=20% Similarity=0.303 Sum_probs=148.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+.+++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45689999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCC
Q 014086 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (431)
Q Consensus 177 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (431)
++....... +..... .... .-.|... .. .
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~-----~~~~~~~-------------~~---~-- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGL-----TKDYGNS-------------PL---H-- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTT-----EEECTTC-------------SS---C--
T ss_pred EecCccccC----cccccc------------------------cccc-----ccccccC-------------cc---c--
Confidence 887542211 100000 0000 0000000 00 0
Q ss_pred CccccCCCCC-CCCCCCCcccEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 257 PTVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
.+..+.. .......+.++|||+|||..+++++|+++|++|| .|..|+++++. +|||||+|.+.++|.+|+
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 135 ---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHH
T ss_pred ---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHH
Confidence 0000000 0001123458999999999999999999999999 99999997643 699999999999999999
Q ss_pred HhcCCCccC-CcEEEEEeccCC
Q 014086 335 KNTEKYELD-GQALECSLAKPQ 355 (431)
Q Consensus 335 ~~l~~~~~~-g~~l~v~~a~~~ 355 (431)
..|||..|. |+.|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999864
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.3e-31 Score=226.95 Aligned_cols=192 Identities=20% Similarity=0.321 Sum_probs=147.9
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
.+++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 789999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
...... ++.... ...+..+. |... .. .+
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~-----~~~~-------------~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKD-----YGNS-------------PL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEE-----SSCC-------------CT---TS---
T ss_pred cCCCcC----CCCcCC------------------------cccccccc-----ccCC-------------ch---hh---
Confidence 754321 111000 00000000 0000 00 00
Q ss_pred cccCCCC-CCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
+..+. ........++++|||+|||..+|+++|+++|+.|| .|..|+++++. +|+|||+|.+.++|.+|+..
T Consensus 105 --~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 105 --FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp --SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHH
T ss_pred --ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHH
Confidence 00000 00011123468999999999999999999999999 99999997754 69999999999999999999
Q ss_pred cCCCccC-CcEEEEEeccCC
Q 014086 337 TEKYELD-GQALECSLAKPQ 355 (431)
Q Consensus 337 l~~~~~~-g~~l~v~~a~~~ 355 (431)
|||..|. |++|+|.|++++
T Consensus 178 l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HTSSCCSSCCSCCEEEECCC
T ss_pred hcCCccCCCCeEEEEeeccc
Confidence 9999999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=9.2e-31 Score=235.41 Aligned_cols=161 Identities=27% Similarity=0.404 Sum_probs=143.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..+++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44568999999999999999999999999999999964 489999999999999999999999999999999976
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCC
Q 014086 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (431)
Q Consensus 178 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (431)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 541
Q ss_pred ccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc
Q 014086 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (431)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l 337 (431)
..+|||+|||..+|+++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1589999999999999999999999999999999984 5666999999999999999999999
Q ss_pred C-CCccC---CcEEEEEeccCCCCCC
Q 014086 338 E-KYELD---GQALECSLAKPQADQK 359 (431)
Q Consensus 338 ~-~~~~~---g~~l~v~~a~~~~~~~ 359 (431)
| +..+. +++|.|.++.+.....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESSS
T ss_pred cCCeEEecCCCceEEEeeccccCccC
Confidence 5 44444 9999999998765443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=4.9e-27 Score=214.36 Aligned_cols=164 Identities=18% Similarity=0.359 Sum_probs=152.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
.+..++|||+|||+++|+++|+++|+.||.|..|+++.+..+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc---------ccccccCCCCCC-CHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCC
Q 014086 178 SQAK---------YRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (431)
Q Consensus 178 ~~~~---------~~l~v~~lp~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (431)
+.+. ++|||+|||..+ ++++|+++|+.||. |..+.++.+ .+|.++|+|||.|.+.++|..|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8754 479999999995 99999999999999 999999988 4799999999999999999999999998
Q ss_pred CCcccCCCCCccccCCCCC
Q 014086 248 PNFKLGTNAPTVSWADPRN 266 (431)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (431)
.. +.++.+.|.|+.+..
T Consensus 249 ~~--~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 249 LS--LGGSHLRVSFCAPGP 265 (284)
T ss_dssp CE--ETTEECEEEECCSSS
T ss_pred Cc--cCCeEEEEEEecCCC
Confidence 74 478899999987765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.8e-26 Score=211.40 Aligned_cols=162 Identities=21% Similarity=0.344 Sum_probs=140.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...++|||+|||+++|+++|+++|+.|| .|..|+++.+.. |+++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999998876 88999999999999999999999999999999999988
Q ss_pred cccc-------------ccccccCCCCC-CCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHH
Q 014086 178 SQAK-------------YRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (431)
Q Consensus 178 ~~~~-------------~~l~v~~lp~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (431)
+.+. ++|||+|||.. +++++|+++|+.||. |..+.++.+...++.++|||||.|.+.++|..|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 7532 57999999999 999999999999999 9999999873335999999999999999999999
Q ss_pred HhCCCCcccCCCCCccccCCCC
Q 014086 244 KMTNPNFKLGTNAPTVSWADPR 265 (431)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (431)
.|++. .+.++.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 99986 467888999888765
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.6e-23 Score=173.33 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=79.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
....
T Consensus 150 ~~~~ 153 (158)
T 2kn4_A 150 GRPP 153 (158)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=9.4e-23 Score=158.62 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
|..+++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999985 55899999999999999999999999999999999988
Q ss_pred cccc--------------ccccccCCCCCCCHHH
Q 014086 178 SQAK--------------YRLFIGNIPRNWGSED 197 (431)
Q Consensus 178 ~~~~--------------~~l~v~~lp~~~~~~~ 197 (431)
+.++ .+|||+|||+.+|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7643 3699999999988753
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=149.84 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
-.++++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=9.9e-22 Score=160.86 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=112.2
Q ss_pred CCCcceEEEEecCHHHHHHHHHHh-CCCccCCeEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecC
Q 014086 140 SENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (431)
Q Consensus 140 g~~~g~afV~f~~~e~a~~al~~l-~~~~~~g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (431)
...+|+++|+|.+.++|.+|++.+ ++..+.| .|.+.++............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~---------------------------- 60 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH---------------------------- 60 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS----------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc----------------------------
Confidence 567999999999999999999999 9999999 9999877643211000000
Q ss_pred CCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhc
Q 014086 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (431)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (431)
.............++|||+|||+.+|+++|+++|++
T Consensus 61 --------------------------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 61 --------------------------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp --------------------------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred --------------------------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 000000112233479999999999999999999999
Q ss_pred cccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCC
Q 014086 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 299 ~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 356 (431)
||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 37999999999999999999999999999999999998653
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=149.36 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=77.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999999888999999999999999999999999999999999999986
No 26
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=1.1e-22 Score=177.78 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=77.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccc--cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
.++|||+|||+.+|+++|+++|++|| .|..|+|++++.++.+||||||+|.+.++|.+||..||+..|.|+.|+|.+|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 37999999999999999999999999 9999999999989999999999999999999999999999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
++..
T Consensus 148 ~~~~ 151 (229)
T 3q2s_C 148 NKQF 151 (229)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 7643
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=145.30 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+++.++|||+|||+++|+++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=143.24 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=76.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC-CCccCCcEEEEEecc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-KYELDGQALECSLAK 353 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~-~~~~~g~~l~v~~a~ 353 (431)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.+||||||+|.+.++|.+|++.++ +..|.|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999999874 567999999999998
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=144.06 Aligned_cols=82 Identities=32% Similarity=0.510 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC-CCccCCeEeeeccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN-NTEFKGKKIRCSTS 178 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~-~~~~~g~~i~v~~~ 178 (431)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+|++.++ +..+.||+|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred cccc
Q 014086 179 QAKY 182 (431)
Q Consensus 179 ~~~~ 182 (431)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=137.44 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=80.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987664
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-21 Score=141.47 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC----ccCCeEe
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE--VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKKI 173 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~----~~~g~~i 173 (431)
.-.||||+|||+++|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .|.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999997 4899999
Q ss_pred eeccccc
Q 014086 174 RCSTSQA 180 (431)
Q Consensus 174 ~v~~~~~ 180 (431)
.|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=136.87 Aligned_cols=85 Identities=26% Similarity=0.485 Sum_probs=80.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
.+++|||+|||..+|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34899999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76553
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=142.16 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=79.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.++|||+|||+.+|+++|+++|++||.|.+|+|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34799999999999999999999999999999999999988899999999999999999999999999999999999997
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 5544
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=140.43 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=74.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcccc--EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC----ccCCcEEE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQALE 348 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~----~~~g~~l~ 348 (431)
..+|||+|||+.+|+++|+++|++||. |.+|++++++.++.+||||||+|.+.++|.+|++.|||. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 379999999999999999999999995 669999999999999999999999999999999999986 58999999
Q ss_pred EEeccC
Q 014086 349 CSLAKP 354 (431)
Q Consensus 349 v~~a~~ 354 (431)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=137.95 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=81.9
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34558999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
+.+.....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98776543
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=136.26 Aligned_cols=86 Identities=23% Similarity=0.455 Sum_probs=80.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 445899999999999999999999999999999999999888889999999999999999998 9999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8766543
No 37
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=4e-20 Score=144.11 Aligned_cols=105 Identities=18% Similarity=0.330 Sum_probs=96.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..+++|||+|||+++|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 556899999999999999999999999999999999976 55699999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCC
Q 014086 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (431)
Q Consensus 178 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~ 207 (431)
+.+.... .+++...++++|..+|+.+|.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 677888889999999999985
No 38
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=6.2e-20 Score=151.18 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=80.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875543
No 39
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-20 Score=137.33 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=80.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEE-EecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
+.++|||+|||..+|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34899999999999999999999999999999 99999888888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
.+.....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8766543
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=137.76 Aligned_cols=86 Identities=27% Similarity=0.439 Sum_probs=80.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876544
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=4e-19 Score=138.35 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=81.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
+++.....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 98776543
No 42
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.8e-20 Score=147.86 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=83.6
Q ss_pred eEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEE
Q 014086 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (431)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (431)
+.|+.|.....+..|+..+++......+ ...+..+ .......++|||+|||..+|+++|+++|+.||.|..|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 4667777777888888888765332211 1122222 22334568999999999999999999999999999999
Q ss_pred ecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCCC
Q 014086 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 307 i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+++.....
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99998888889999999999999999999999999999999999998765543
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=137.87 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=81.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
++....+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8776543
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=136.98 Aligned_cols=88 Identities=23% Similarity=0.408 Sum_probs=81.2
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCC-CCCCCcCCEEEEEeCCHHHHHHHHHhc-CCCccCCcEEEE
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA-KPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALEC 349 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~~rg~afV~F~~~~~A~~Al~~l-~~~~~~g~~l~v 349 (431)
....++|||+|||..+|+++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999999 777888999999999999999999999 999999999999
Q ss_pred EeccCCCCCC
Q 014086 350 SLAKPQADQK 359 (431)
Q Consensus 350 ~~a~~~~~~~ 359 (431)
.|+++.....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998776543
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=138.12 Aligned_cols=88 Identities=23% Similarity=0.434 Sum_probs=81.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34458999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
+.+.....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 98776543
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=135.95 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..+++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.4e-19 Score=132.22 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=77.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
+.+|||+|||+++++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=137.53 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=81.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 34589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
++.....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8776544
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=134.00 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999999887
Q ss_pred cc
Q 014086 180 AK 181 (431)
Q Consensus 180 ~~ 181 (431)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.3e-19 Score=132.41 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=77.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
.+|||+|||..+++++|+++|++||.|..|+++++..++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999888888999999999999999999999999999999999999875
Q ss_pred C
Q 014086 356 A 356 (431)
Q Consensus 356 ~ 356 (431)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1e-19 Score=133.50 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=142.93 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=81.7
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
.....++|||+|||..+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014086 351 LAKPQADQ 358 (431)
Q Consensus 351 ~a~~~~~~ 358 (431)
++++...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876554
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=2.2e-19 Score=134.98 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=79.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999998888899999999999999999999999999999999999987
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
....
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6653
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=137.02 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=81.5
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC------CCccCCc
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE------KYELDGQ 345 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~------~~~~~g~ 345 (431)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3445899999999999999999999999999999999999888889999999999999999999999 9999999
Q ss_pred EEEEEeccCCCCCC
Q 014086 346 ALECSLAKPQADQK 359 (431)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (431)
.|+|.|+.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998765543
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-19 Score=136.88 Aligned_cols=86 Identities=29% Similarity=0.458 Sum_probs=79.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..+|+ .|.|++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34458999999999999999999999999999999999998888899999999999999999999998 89999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+.+....
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9865443
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=8.5e-20 Score=137.19 Aligned_cols=85 Identities=28% Similarity=0.608 Sum_probs=80.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 014086 180 AKYRL 184 (431)
Q Consensus 180 ~~~~l 184 (431)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 57
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1e-19 Score=151.22 Aligned_cols=130 Identities=9% Similarity=0.126 Sum_probs=80.5
Q ss_pred eecCChhHHHHHHHHhCCCCcccCCCCCccccCCC----------------CCCCCCCCCcccEEEEecCCCCCCHHHHH
Q 014086 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------------RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (431)
Q Consensus 230 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 293 (431)
..|....++..++..+++......++.....+... ...........++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45667777777777777655544444444333211 01111223446799999999999999999
Q ss_pred HHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCCC
Q 014086 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 294 ~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.+.....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999998888889999999999999999999999999999999999998766544
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.6e-19 Score=132.49 Aligned_cols=80 Identities=28% Similarity=0.430 Sum_probs=76.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.++|||+|||..+++++|+++|++||.|..|+++++..++.++|||||+|.+.++|.+|+..|||..|.|++|+|.||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999985
No 59
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=136.36 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 178 SQAKYR 183 (431)
Q Consensus 178 ~~~~~~ 183 (431)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 887643
No 60
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=133.18 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.++|||+|||..+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34799999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.8e-20 Score=136.68 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 180 AK 181 (431)
Q Consensus 180 ~~ 181 (431)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 62
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.1e-19 Score=141.13 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=75.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+++|||+|||+.+|+++|+++|++||.|.+|+|++++.+ +||||||+|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 368999999999999999999999999999999988643 589999999999999999999999999999999999987
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6544
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=134.74 Aligned_cols=83 Identities=33% Similarity=0.571 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.++..++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 177 TSQ 179 (431)
Q Consensus 177 ~~~ 179 (431)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 64
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=9.6e-20 Score=173.95 Aligned_cols=86 Identities=16% Similarity=0.341 Sum_probs=80.3
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34558999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986544
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=135.25 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 177 TSQA 180 (431)
Q Consensus 177 ~~~~ 180 (431)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8763
No 66
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=3.4e-19 Score=138.72 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=81.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
+++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 8776543
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=137.62 Aligned_cols=84 Identities=24% Similarity=0.416 Sum_probs=78.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34799999999999999999999999999999999998 67779999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
+....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=4.4e-19 Score=135.98 Aligned_cols=86 Identities=22% Similarity=0.393 Sum_probs=80.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc---CCcEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQALEC 349 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~---~g~~l~v 349 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4458999999999999999999999999999999999998888899999999999999999999999887 8999999
Q ss_pred EeccCCCCC
Q 014086 350 SLAKPQADQ 358 (431)
Q Consensus 350 ~~a~~~~~~ 358 (431)
.++.+....
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999876654
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=132.82 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=77.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999998
Q ss_pred c
Q 014086 353 K 353 (431)
Q Consensus 353 ~ 353 (431)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=133.81 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
...+.++|||+|||..+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccC
Q 014086 351 LAKP 354 (431)
Q Consensus 351 ~a~~ 354 (431)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9974
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=134.33 Aligned_cols=85 Identities=22% Similarity=0.433 Sum_probs=78.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCC-CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.+.++|||+|||+.+|+++|+++|+.|| |..|+|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3458999999999999999999999999 999999999887 778999999999999999999 9999999999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
+.+.....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98766543
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=134.50 Aligned_cols=84 Identities=12% Similarity=0.373 Sum_probs=78.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445899999999999999999999999999999999988 6677999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014086 353 KPQAD 357 (431)
Q Consensus 353 ~~~~~ 357 (431)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.9e-19 Score=133.24 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=78.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 44589999999999999999999999999999999998655 4799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
++.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9866543
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=135.43 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
..++..++|||+|||+++|+++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44677899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEeeecccc
Q 014086 168 FKGKKIRCSTSQ 179 (431)
Q Consensus 168 ~~g~~i~v~~~~ 179 (431)
|.|+.|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998763
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=135.00 Aligned_cols=85 Identities=26% Similarity=0.623 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 987653
No 76
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=6.4e-20 Score=160.16 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=135.48 Aligned_cols=86 Identities=29% Similarity=0.435 Sum_probs=79.0
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999988 566689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876644
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-19 Score=132.17 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=76.3
Q ss_pred cccEEEEecCCCCCCHHHHH----HHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
..++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34799999999999999999 99999999999999999877 689999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 014086 350 SLAKPQADQ 358 (431)
Q Consensus 350 ~~a~~~~~~ 358 (431)
.+|++....
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=135.66 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=78.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCC---CCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP---GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
+.++|||+|||..+|+++|+++|++||.|..|+|+.+.. ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 347999999999999999999999999999999998876 45678999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 014086 351 LAKPQADQK 359 (431)
Q Consensus 351 ~a~~~~~~~ 359 (431)
++.+.....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998766543
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=5.8e-19 Score=135.09 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=79.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC---cEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG---QALEC 349 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g---~~l~v 349 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..||+..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999988 56668999999999999999999999999998 99999
Q ss_pred EeccCCCCCC
Q 014086 350 SLAKPQADQK 359 (431)
Q Consensus 350 ~~a~~~~~~~ 359 (431)
.|+.+...+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877654
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=136.99 Aligned_cols=85 Identities=20% Similarity=0.428 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 82
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=136.82 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=81.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 988654
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=137.51 Aligned_cols=84 Identities=24% Similarity=0.559 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
++..++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.+++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8764
No 84
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=7.7e-20 Score=138.25 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=77.7
Q ss_pred ccEEEEecCCC------CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC-cEE
Q 014086 275 VKAVYVKNLPR------NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QAL 347 (431)
Q Consensus 275 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g-~~l 347 (431)
.++|||+|||+ .+++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 99999999999999999999999999988899999999999999999999999999999 999
Q ss_pred EEEeccCC
Q 014086 348 ECSLAKPQ 355 (431)
Q Consensus 348 ~v~~a~~~ 355 (431)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=4.2e-20 Score=139.69 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC-eE
Q 014086 100 HGSEVYIGGIPH------DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KK 172 (431)
Q Consensus 100 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g-~~ 172 (431)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeecccccc
Q 014086 173 IRCSTSQAK 181 (431)
Q Consensus 173 i~v~~~~~~ 181 (431)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 86
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=134.63 Aligned_cols=83 Identities=24% Similarity=0.560 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 87
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.8e-19 Score=136.28 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=80.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014086 353 KPQAD 357 (431)
Q Consensus 353 ~~~~~ 357 (431)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 88
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=6.7e-19 Score=134.13 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=78.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4458999999999999999999999997 999999999988888999999999999999999 89999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.+....
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876554
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=3e-19 Score=139.02 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
.+..++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 88653
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=135.31 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..+++|||+|||+++|+++|+++|++||.|..| +|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8764
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=132.10 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=78.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345589999999999999999999999999999999998754 589999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876654
No 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=137.05 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98754
No 93
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=4.6e-19 Score=138.03 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 88654
No 94
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=136.43 Aligned_cols=85 Identities=26% Similarity=0.612 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++.++
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 98754
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=133.19 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCC--CccCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~--~~~~g~~i~ 174 (431)
.++..++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.+++ ..|.||+|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4677899999999999999999999999999999999875 89999999999999999998864 789999999
Q ss_pred eccccccc
Q 014086 175 CSTSQAKY 182 (431)
Q Consensus 175 v~~~~~~~ 182 (431)
|.++..+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99988653
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.1e-19 Score=136.49 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=80.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEE--------EEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
...++|||+|||..+|+++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4458999999999999999999999999999 69999998888889999999999999999999999999999
Q ss_pred cEEEEEeccCCCCC
Q 014086 345 QALECSLAKPQADQ 358 (431)
Q Consensus 345 ~~l~v~~a~~~~~~ 358 (431)
+.|+|.++++....
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999876554
No 97
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=135.88 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=79.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8654
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=137.22 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC------CCccCC
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN------NTEFKG 170 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~------~~~~~g 170 (431)
.+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 35568999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEeeecccccc
Q 014086 171 KKIRCSTSQAK 181 (431)
Q Consensus 171 ~~i~v~~~~~~ 181 (431)
+.|+|.++.++
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998765
No 99
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.4e-19 Score=141.02 Aligned_cols=86 Identities=33% Similarity=0.510 Sum_probs=81.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998764
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=6.6e-19 Score=139.52 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=80.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.+....
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876554
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=136.25 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+++|||+|||+++|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 102
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=134.72 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCC---CCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. +++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4679999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred ccccccc
Q 014086 176 STSQAKY 182 (431)
Q Consensus 176 ~~~~~~~ 182 (431)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987653
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.4e-19 Score=130.21 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999995 68889999999997
Q ss_pred cc
Q 014086 177 TS 178 (431)
Q Consensus 177 ~~ 178 (431)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 104
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=136.58 Aligned_cols=85 Identities=27% Similarity=0.526 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=135.73 Aligned_cols=84 Identities=26% Similarity=0.459 Sum_probs=79.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44589999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.2e-20 Score=136.05 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=72.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccc--cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
.+|||+|||+.+|+++|+++|++|| .|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999888899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=134.93 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=79.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhc-cccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc-cCCcEEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE-LDGQALECS 350 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~-~~g~~l~v~ 350 (431)
.+.++|||+|||..+|+++|+++|+. ||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..||+.. |.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999998 77779999999999999999999999999 999999999
Q ss_pred eccCCCCCC
Q 014086 351 LAKPQADQK 359 (431)
Q Consensus 351 ~a~~~~~~~ 359 (431)
++.+.....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998766543
No 108
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=131.02 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=77.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCC-cCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 37999999999999999999999999999999999887654 78999999999999999999999999999999999998
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
+...
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=135.57 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999987 9999999999999999999997 899999999999987
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.3e-19 Score=146.83 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8754
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=130.12 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=71.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc--cCCcEEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECS 350 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~--~~g~~l~v~ 350 (431)
.++++|||+|||+.+|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|+..||+.. |.|++|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34589999999999999999999999999999999864 6999999999999999999999865 789999999
Q ss_pred eccCCC
Q 014086 351 LAKPQA 356 (431)
Q Consensus 351 ~a~~~~ 356 (431)
|++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998654
No 112
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=132.17 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..+++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 113
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=133.82 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=74.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||+.+|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 348999999999999999999999999999999999988 7779999999999999999998 89999999999999976
Q ss_pred C
Q 014086 354 P 354 (431)
Q Consensus 354 ~ 354 (431)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 114
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=132.94 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEE--------EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~ 343 (431)
....++|||+|||..+|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344589999999999999999999999999999 999999888888999999999999999999999999999
Q ss_pred CcEEEEEecc
Q 014086 344 GQALECSLAK 353 (431)
Q Consensus 344 g~~l~v~~a~ 353 (431)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 115
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=132.02 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=72.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~v~~ 351 (431)
+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3479999999999999999999999999999999986 5999999999999999999886 4789999999999
Q ss_pred ccCCCCCC
Q 014086 352 AKPQADQK 359 (431)
Q Consensus 352 a~~~~~~~ 359 (431)
|+++....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98765543
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-18 Score=131.44 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|..+. .++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3445899999999999999999999999999999997653 3589999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987544
No 117
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=135.09 Aligned_cols=86 Identities=24% Similarity=0.492 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHHh-CCCccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~e~a~~al~~l-~~~~~~g~~i~v 175 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+|++.| ++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred cccccccc
Q 014086 176 STSQAKYR 183 (431)
Q Consensus 176 ~~~~~~~~ 183 (431)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99887543
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=8.2e-19 Score=124.86 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=69.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+..|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.+.++|.+|+..||+..+.|++|+|.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 47899999999999999999999999999999976 37999999999999999999999999999999999995
No 119
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=144.37 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 120
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=7.6e-19 Score=130.07 Aligned_cols=80 Identities=25% Similarity=0.524 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999999999998875
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=133.72 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=79.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEE-EEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcE----E
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA----L 347 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~----l 347 (431)
...++|||+|||..+|+++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3458999999999999999999999999999 9999999988888999999999999999999999999999999 9
Q ss_pred EEEeccCCCC
Q 014086 348 ECSLAKPQAD 357 (431)
Q Consensus 348 ~v~~a~~~~~ 357 (431)
+|.||++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999986543
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=133.31 Aligned_cols=84 Identities=18% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeE----
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT-EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK---- 172 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~---- 172 (431)
....++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eeecccccc
Q 014086 173 IRCSTSQAK 181 (431)
Q Consensus 173 i~v~~~~~~ 181 (431)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988754
No 123
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=131.53 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++++++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44578999999999999999999999999999999999976 99999999999999999999999999999999999998
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=132.65 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=77.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3458999999999999999999999999999999999875 666899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
+.....
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 765443
No 125
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=9.9e-19 Score=129.47 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=76.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 379999999999999999999999999999999999888888999999999999999999 8999999999999999986
Q ss_pred C
Q 014086 355 Q 355 (431)
Q Consensus 355 ~ 355 (431)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 126
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=5.3e-19 Score=135.53 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc---CCeEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~---~g~~i~ 174 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred eccccccc
Q 014086 175 CSTSQAKY 182 (431)
Q Consensus 175 v~~~~~~~ 182 (431)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987653
No 127
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.7e-19 Score=138.98 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=80.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
..+.++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+.++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 128
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=7.5e-19 Score=135.65 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...+++|||+|||+++|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 129
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=133.64 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc-cCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~-~~g~~i~ 174 (431)
.+...++|||+|||+++|+++|+++|++ ||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++.. |.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456799999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred eccccccc
Q 014086 175 CSTSQAKY 182 (431)
Q Consensus 175 v~~~~~~~ 182 (431)
|.++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987543
No 130
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=134.73 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34458999999999999999999999999999999999988888899999999999999999998 99999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9877654
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.6e-19 Score=125.01 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||+|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3578999999999999999999999999999999965 5999999999999999999999999999999999887
Q ss_pred c
Q 014086 179 Q 179 (431)
Q Consensus 179 ~ 179 (431)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.37 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc--cCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~--~~g~~i~v 175 (431)
.+++++|||+|||+++|+++|+++|++||.|.+|++++ +||||||+|.+.++|.+|++.+++.. |.||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45689999999999999999999999999999999985 38999999999999999999999875 78999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998764
No 133
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.3e-18 Score=133.14 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC---eEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG---KKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g---~~i~ 174 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3468999999999999999999999999999999999997 79999999999999999999999999999998 9999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++..+
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 9998764
No 134
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.9e-19 Score=138.11 Aligned_cols=81 Identities=26% Similarity=0.473 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
.+..++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 014086 178 S 178 (431)
Q Consensus 178 ~ 178 (431)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 135
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=136.14 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44679999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEeeeccccccc
Q 014086 170 GKKIRCSTSQAKY 182 (431)
Q Consensus 170 g~~i~v~~~~~~~ 182 (431)
|+.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999988653
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=136.00 Aligned_cols=83 Identities=29% Similarity=0.576 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+. +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 137
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=134.59 Aligned_cols=84 Identities=21% Similarity=0.498 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 55679999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.5e-19 Score=136.70 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=79.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999998888899999999999999999987 999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877654
No 139
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=130.77 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=71.5
Q ss_pred cccEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC--ccCCcEEEEE
Q 014086 274 QVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY--ELDGQALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~--~~~g~~l~v~ 350 (431)
++++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..||+. .|.|++|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 458999999999 9999999999999999999999876 489999999999999999998854 5999999999
Q ss_pred eccCCCCC
Q 014086 351 LAKPQADQ 358 (431)
Q Consensus 351 ~a~~~~~~ 358 (431)
||+.....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x4d_A 88 LSQKYKRI 95 (102)
T ss_dssp EECCCTTS
T ss_pred ECCCCCCC
Confidence 99865443
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.4e-18 Score=135.93 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=77.2
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cc
Q 014086 352 AK 353 (431)
Q Consensus 352 a~ 353 (431)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 141
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=133.19 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|+.+ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 87653
No 142
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=133.04 Aligned_cols=82 Identities=20% Similarity=0.506 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 143
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.2e-18 Score=129.81 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=76.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|.++ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999874 5566899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876654
No 144
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=7.3e-19 Score=129.90 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCC-CcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..++|||+|||+++|+++|+++|++||.|..|.++.+..++. ++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 578999999999999999999999999999999999987766 8999999999999999999999999999999999987
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 145
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=6.4e-18 Score=133.31 Aligned_cols=87 Identities=28% Similarity=0.421 Sum_probs=79.9
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
.....++|||+|||..+++++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44556899999999999999999999999999999999998 67779999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014086 351 LAKPQADQ 358 (431)
Q Consensus 351 ~a~~~~~~ 358 (431)
+|.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99865543
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=139.38 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=78.9
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEE--EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC----ccCCc
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQ 345 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~----~~~g~ 345 (431)
....++|||+|||+.+|+++|+++|++||.|.. |+|++++.++.+||||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999977 99999998889999999999999 999999999999 99999
Q ss_pred EEEEEeccCCCC
Q 014086 346 ALECSLAKPQAD 357 (431)
Q Consensus 346 ~l~v~~a~~~~~ 357 (431)
.|+|.++++...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987544
No 147
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=131.14 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=78.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhcccc-EEEEEec-CCCCCCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~~~~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~v 349 (431)
..++|||+|||..+|+++|+++|+.||. |..|.++ .++.++.++|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3489999999999999999999999998 9999998 788777889999999999999999999996 58999999999
Q ss_pred EeccCCCCC
Q 014086 350 SLAKPQADQ 358 (431)
Q Consensus 350 ~~a~~~~~~ 358 (431)
.||.+....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999877654
No 148
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=3.8e-19 Score=133.48 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 014086 179 Q 179 (431)
Q Consensus 179 ~ 179 (431)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.7e-18 Score=132.97 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+. +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 177 TSQ 179 (431)
Q Consensus 177 ~~~ 179 (431)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-18 Score=129.56 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=73.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC-----cEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g-----~~l~ 348 (431)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3589999999999999999999999999999999886 899999999999999999999999999 9999
Q ss_pred EEeccCCCCCC
Q 014086 349 CSLAKPQADQK 359 (431)
Q Consensus 349 v~~a~~~~~~~ 359 (431)
|.+|.+.....
T Consensus 87 V~~a~~~~~~~ 97 (108)
T 1x4c_A 87 VKVDGPRSPSY 97 (108)
T ss_dssp EEESSCCSCCC
T ss_pred EEeCCCCCCCC
Confidence 99999865543
No 151
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=130.36 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=75.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+++++|+++|++||.|..|+|+.+.. +.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3458999999999999999999999999999999999886 566999999999999999999999999999999999998
Q ss_pred cC
Q 014086 353 KP 354 (431)
Q Consensus 353 ~~ 354 (431)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 152
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=134.16 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
..+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|++.+ +..|.|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999765 58899999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 988754
No 153
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.6e-19 Score=126.63 Aligned_cols=75 Identities=23% Similarity=0.628 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+|||+|||+++|+++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++ +++..|.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999996 9999999999999864
No 154
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-19 Score=137.63 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=79.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999988888999999999999999999 99999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++...+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876553
No 155
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2e-18 Score=128.63 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 156
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=135.26 Aligned_cols=83 Identities=19% Similarity=0.490 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8653
No 157
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=7.2e-18 Score=128.35 Aligned_cols=79 Identities=33% Similarity=0.646 Sum_probs=72.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
.+.++|||+|||..+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345899999999999999999999999999999987 369999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014086 353 KPQADQK 359 (431)
Q Consensus 353 ~~~~~~~ 359 (431)
.+.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8776644
No 158
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=127.25 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=73.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc--CCCccCCcEEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT--EKYELDGQALECS 350 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l--~~~~~~g~~l~v~ 350 (431)
.++++|||+|||+.+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45589999999999999999999999999999999876 699999999999999999976 4678999999999
Q ss_pred eccCCCCCC
Q 014086 351 LAKPQADQK 359 (431)
Q Consensus 351 ~a~~~~~~~ 359 (431)
|++++....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998766543
No 159
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=132.89 Aligned_cols=82 Identities=21% Similarity=0.505 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...++|||+|||+++|+++|+++|+.|| |..|+|+.++.+ |+++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 160
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=126.16 Aligned_cols=78 Identities=27% Similarity=0.592 Sum_probs=72.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|++. +|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345899999999999999999999999999999997 489999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876554
No 161
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=7.1e-19 Score=125.63 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
+|||+|||..+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. +|+..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999888889999999999999999997 9999999999999986
No 162
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3.2e-18 Score=131.47 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=76.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34589999999999999999999999999999999999988888999999999999999999976 58999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 163
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7e-19 Score=131.93 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC--ccCCeEee
Q 014086 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~--~~~g~~i~ 174 (431)
..++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.||+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34689999999999 9999999999999999999999865 689999999999999999988864 59999999
Q ss_pred ecccccccccc
Q 014086 175 CSTSQAKYRLF 185 (431)
Q Consensus 175 v~~~~~~~~l~ 185 (431)
|.++.....+.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 1x4d_A 86 VHLSQKYKRIK 96 (102)
T ss_dssp EEEECCCTTSS
T ss_pred EEECCCCCCCC
Confidence 99998765543
No 164
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=133.02 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
....++|||+|||+++|+++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .+++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 88754
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=129.00 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=75.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEE-EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .++.++|||||+|.+.++|.+||.. |+..|+||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34589999999999999999999999999997 889888 5667799999999999999999997 99999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+.+....
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 9765543
No 166
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-19 Score=132.88 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 167
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=128.64 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=77.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+. +++.|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 445899999999999999999999999999999999999888889999999999999999998 477899999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 876554
No 168
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=129.65 Aligned_cols=84 Identities=30% Similarity=0.496 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998864 389999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 987653
No 169
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=128.10 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=72.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECS 350 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~--~~~~g~~l~v~ 350 (431)
.++++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..||+ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999875 69999999999999999998865 45999999999
Q ss_pred eccCCCCC
Q 014086 351 LAKPQADQ 358 (431)
Q Consensus 351 ~a~~~~~~ 358 (431)
|++++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876654
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=132.36 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=76.7
Q ss_pred cccEEEEecCCCCCCHHHHH---HHHhccccEEEEEecCCCCCC---CcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLK---KLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~~---~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l 347 (431)
..++|||+|||+.+++++|+ ++|++||.|..|+|+++..++ .++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34799999999999999999 999999999999999887643 456999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 014086 348 ECSLAKPQAD 357 (431)
Q Consensus 348 ~v~~a~~~~~ 357 (431)
+|.||.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999987653
No 171
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=139.56 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987653
No 172
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-19 Score=132.44 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=77.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34589999999999999999999999999998888888888888999999999999999999999999999999999998
Q ss_pred cCC
Q 014086 353 KPQ 355 (431)
Q Consensus 353 ~~~ 355 (431)
+..
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 173
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.8e-18 Score=137.06 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 174
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=133.50 Aligned_cols=82 Identities=28% Similarity=0.616 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 180 AK 181 (431)
Q Consensus 180 ~~ 181 (431)
++
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 175
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=2.7e-18 Score=126.46 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=73.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. +++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999999888889999999999999999996 5788999999999986
No 176
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=132.30 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=77.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6999999999999999999999999999999999988643
Q ss_pred ----------------ccccccCCC
Q 014086 182 ----------------YRLFIGNIP 190 (431)
Q Consensus 182 ----------------~~l~v~~lp 190 (431)
.++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 367888775
No 177
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=141.65 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=77.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccc--cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
.++|||+|||+.+|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.+|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
.+..
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 7643
No 178
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=3.4e-18 Score=134.91 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..+++|||+|||+++++++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 178 SQAKYR 183 (431)
Q Consensus 178 ~~~~~~ 183 (431)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 179
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-19 Score=127.09 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
++|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|++.++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999888 9999999999875
No 180
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=131.66 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999997 888888 7899999999999999999999976 9999999999998
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87654
No 181
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=131.90 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=75.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCC-CCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
...++|||+|||..+|+++|+++|+.|| |..|+|+.++ .++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4458999999999999999999999999 9999999998 57778999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 014086 352 AKPQA 356 (431)
Q Consensus 352 a~~~~ 356 (431)
+++..
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98653
No 182
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.5e-18 Score=140.66 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8754
No 183
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=132.31 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|+.||.| .|+|++++ +|+++|||||+|.+.++|.+|| .+++..|.||.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 35667899999999999999999999999955 99999997 8999999999999999999999 589999999999998
Q ss_pred cccc
Q 014086 177 TSQA 180 (431)
Q Consensus 177 ~~~~ 180 (431)
.+..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7664
No 184
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=129.61 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45679999999999999999999999999999999999854 3699999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 185
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.4e-18 Score=131.26 Aligned_cols=80 Identities=25% Similarity=0.388 Sum_probs=75.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445899999999999999999999999999999999998 6677999999999999999999999999999999999998
Q ss_pred c
Q 014086 353 K 353 (431)
Q Consensus 353 ~ 353 (431)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 186
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=127.30 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+|++ +++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567999999999999999999999999 9999999999 789999999999999999999998 999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 187
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=133.45 Aligned_cols=85 Identities=24% Similarity=0.485 Sum_probs=79.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||..+++++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34799999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
+....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76654
No 188
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=3.1e-18 Score=135.22 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=77.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999888888999999999999999999 8999999999999999985
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 189
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=8.9e-19 Score=139.06 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
+...++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999987 9999999999999999999998 999999999999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9887643
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=127.60 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=73.0
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3446899999999999999999999999987 56666 4556699999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987644
No 191
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=128.21 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998765 89999999999999999999999999999999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998764
No 192
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.6e-19 Score=135.72 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567999999999999999999999999999 899999998 899999999999999999999975 9999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88754
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=126.38 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCe-Ee
Q 014086 101 GSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KI 173 (431)
Q Consensus 101 ~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~-~i 173 (431)
+++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46799999999999999999999999999999999 88
Q ss_pred eec
Q 014086 174 RCS 176 (431)
Q Consensus 174 ~v~ 176 (431)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=138.52 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC----ccCCeE
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKK 172 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~----~~~g~~ 172 (431)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|++. .|.||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eeeccccccc
Q 014086 173 IRCSTSQAKY 182 (431)
Q Consensus 173 i~v~~~~~~~ 182 (431)
|+|.++.+.+
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999988654
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=130.25 Aligned_cols=82 Identities=20% Similarity=0.428 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|.|..+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87653
No 196
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=132.04 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
.....++|||+|||..+|+++|+++|++||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999988643 68999999999999999999999999999999999
Q ss_pred eccCC
Q 014086 351 LAKPQ 355 (431)
Q Consensus 351 ~a~~~ 355 (431)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 197
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=131.75 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 599999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
No 198
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=128.90 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+|+++|||||+|.+.++|.+||+ ++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4457899999999999999999999999999999999999999999999999999999999996 57789999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87653
No 199
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=134.82 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+|| .|++..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999999999998875
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 200
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=130.76 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=73.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|+.||.| .|+|+.++ ++.++|||||+|.+.++|.+||. +|+..|.||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 344799999999999999999999999955 99999998 67779999999999999999995 7999999999999998
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 201
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-19 Score=129.52 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=75.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34799999999999999999999999999999999998888889999999999999999999999999999999887764
No 202
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=129.24 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=73.4
Q ss_pred ccEEEEecCCCCC------CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EE
Q 014086 275 VKAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-AL 347 (431)
Q Consensus 275 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-~l 347 (431)
.++|||+|||+.+ |+++|+++|++||.|..|+|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4799999999999 789999999999999999998 35567799999999999999999999999999998 99
Q ss_pred EEEeccCCC
Q 014086 348 ECSLAKPQA 356 (431)
Q Consensus 348 ~v~~a~~~~ 356 (431)
+|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999997543
No 203
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=129.15 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..+.++|||+|||+++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999754 89999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 014086 178 SQAKYRLFIGN 188 (431)
Q Consensus 178 ~~~~~~l~v~~ 188 (431)
+.++..+++++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888777664
No 204
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=125.97 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=74.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||+.+|+++|+++|+.| .|..|+|+++ .++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 44899999999999999999999999 9999999999 566679999999999999999999 99999999999999998
Q ss_pred CCC
Q 014086 354 PQA 356 (431)
Q Consensus 354 ~~~ 356 (431)
+..
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 205
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.5e-18 Score=135.32 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
+...++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999987 9999999999999999999997 999999999999
Q ss_pred eccccc
Q 014086 175 CSTSQA 180 (431)
Q Consensus 175 v~~~~~ 180 (431)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988764
No 206
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=7.8e-19 Score=130.27 Aligned_cols=81 Identities=25% Similarity=0.476 Sum_probs=74.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|||+|||..+++++|+++|++||.|..|++++++.++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988888999999999999 99999999999999999999999875
Q ss_pred CC
Q 014086 356 AD 357 (431)
Q Consensus 356 ~~ 357 (431)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 207
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=130.71 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=73.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECS 350 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~v~ 350 (431)
.++++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34589999999999999999999999999999999876 5999999999999999999887 468999999999
Q ss_pred eccCCCCCC
Q 014086 351 LAKPQADQK 359 (431)
Q Consensus 351 ~a~~~~~~~ 359 (431)
||+++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998766653
No 208
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=132.67 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|+.| .|..|+|++++. |+++|||||+|.+.++|.+|| .+++..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4789999999999999999999999 899999999976 999999999999999999999 6999999999999988765
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 209
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=127.84 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=73.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|||+|||..+|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4799999999999999999999999999999999999876
Q ss_pred CCC
Q 014086 356 ADQ 358 (431)
Q Consensus 356 ~~~ 358 (431)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 210
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=135.22 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=76.7
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
.....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ec
Q 014086 351 LA 352 (431)
Q Consensus 351 ~a 352 (431)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=4.6e-18 Score=129.84 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=70.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..+|||+|||+.+|+++|+++|++|| .|..+.|... .++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 37999999999999999999999999 8999999653 258999999999999999999999999999999999997
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 212
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=132.13 Aligned_cols=86 Identities=21% Similarity=0.363 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeeCCCCC---CCcceEEEEecCHHHHHHHHHHhCCCccCCe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDSS---ENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~f~~~e~a~~al~~l~~~~~~g~ 171 (431)
....++|||+|||+++++++|+ ++|++||.|..|.|+++..++ +++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999987644 5669999999999999999999999999999
Q ss_pred Eeeecccccccc
Q 014086 172 KIRCSTSQAKYR 183 (431)
Q Consensus 172 ~i~v~~~~~~~~ 183 (431)
+|+|.++.++.+
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987764
No 213
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=124.74 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
++|||+|||..+++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999999888889999999999999999999999 9999999999987
No 214
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=128.60 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=74.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||..+|+++|+.+|+.||.|..|+|+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3479999999999999999999999999999999987 5999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76654
No 215
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=123.42 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=72.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4458999999999999999999999999999999974 59999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
+++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 876554
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=131.58 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEe-eCCCCCCCcceEEEEecCHHHHHHHHHHhC--CCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~f~~~e~a~~al~~l~--~~~~~g~~i 173 (431)
..+.++|||+|||+++|+++|+++|+.||. |..|.++ .++.+|+++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 888889999999999999999999999896 589999999
Q ss_pred eeccccccc
Q 014086 174 RCSTSQAKY 182 (431)
Q Consensus 174 ~v~~~~~~~ 182 (431)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999988654
No 217
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=131.94 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=73.6
Q ss_pred CcccEEEEecCCCCCCHHHHH----HHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.+||||||+|.+.++|..|+..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345799999999999999876 7999999999998865 345689999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 014086 349 CSLAKPQADQ 358 (431)
Q Consensus 349 v~~a~~~~~~ 358 (431)
|.||+.+...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999876543
No 218
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=5.5e-19 Score=131.08 Aligned_cols=80 Identities=29% Similarity=0.621 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.+ |.+|+..|++..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred c
Q 014086 182 Y 182 (431)
Q Consensus 182 ~ 182 (431)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 219
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=131.28 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC--CCccCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~--~~~~~g~~i~ 174 (431)
..+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456899999999999999999999999999999999875 8999999999999999999887 4689999999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++..+
T Consensus 101 V~~a~~k 107 (119)
T 2ad9_A 101 IQFSNHK 107 (119)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 9998764
No 220
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=132.86 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999999999999976 99999999999999886
Q ss_pred cc
Q 014086 181 KY 182 (431)
Q Consensus 181 ~~ 182 (431)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 221
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=9.8e-19 Score=131.19 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=75.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||+.+|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 48999999999999999999999999999888888888888899999999999999999999999999999999999864
No 222
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=127.63 Aligned_cols=84 Identities=25% Similarity=0.428 Sum_probs=75.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||..+|+++|+++|+.|+ .|+++.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999999999999999884 567777777778899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9876653
No 223
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=134.98 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccE-EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
...++|||+|||+.+|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345899999999999999999999999999 889999998 677799999999999999999987 99999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+.+....
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9876543
No 224
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=130.73 Aligned_cols=84 Identities=30% Similarity=0.504 Sum_probs=77.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
......++|||+|||+++|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 335568999999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998754
No 225
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=6e-18 Score=136.75 Aligned_cols=81 Identities=28% Similarity=0.558 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 014086 178 S 178 (431)
Q Consensus 178 ~ 178 (431)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 226
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=124.71 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=72.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC--CcEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~--g~~l~v~~ 351 (431)
+.++|||+|||..+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..|. |++|+|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4579999999999999999999999999999999875 589999999999999999999999999 99999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
++++..
T Consensus 90 a~~~~~ 95 (97)
T 1why_A 90 AKSGPS 95 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987644
No 227
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=126.14 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh--CCCccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l--~~~~~~g~~i~v 175 (431)
.+++++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.+ ++..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998864 899999999999999999876 467899999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 998754
No 228
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.15 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=74.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
..+.++|||+|||..+|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+..||+..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 344589999999999999999999999999999999865 59999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+++....
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9876553
No 229
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=128.51 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=74.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
...+|||+|||+.+|+++|+++|+.| .|..|+|+.++. ++++|||||+|.+.++|.+|| .+|+..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999987 566999999999999999999 689999999999999987
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
+...
T Consensus 92 ~~~~ 95 (109)
T 2dnn_A 92 ERQW 95 (109)
T ss_dssp HHHH
T ss_pred ccch
Confidence 6543
No 230
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=130.02 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCe-E
Q 014086 100 HGSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-K 172 (431)
Q Consensus 100 ~~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~-~ 172 (431)
.+++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 46799999999999999999999999999999999 9
Q ss_pred eeecccccc
Q 014086 173 IRCSTSQAK 181 (431)
Q Consensus 173 i~v~~~~~~ 181 (431)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988753
No 231
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=130.97 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC--CCccCCeEee
Q 014086 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~--~~~~~g~~i~ 174 (431)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446899999999998 99999999999999999999974 48999999999999999999886 4569999999
Q ss_pred ecccccccccccc
Q 014086 175 CSTSQAKYRLFIG 187 (431)
Q Consensus 175 v~~~~~~~~l~v~ 187 (431)
|.++..+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766544
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=6.2e-18 Score=133.49 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 7999999999999998875
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.6e-18 Score=138.38 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.+.
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 234
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=126.11 Aligned_cols=80 Identities=31% Similarity=0.529 Sum_probs=73.7
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
...+...++|||+|||+++|+++|+++|++||.|.+|++. +++|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445668999999999999999999999999999999997 3589999999999999999999999999999999
Q ss_pred eccccc
Q 014086 175 CSTSQA 180 (431)
Q Consensus 175 v~~~~~ 180 (431)
|.++.+
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 998875
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=5.1e-18 Score=129.60 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
..|+..++|||+|||+++|+++|+++|++|| .|..+.|.. ++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3466788999999999999999999999999 899998854 34799999999999999999999999999999999
Q ss_pred eccccc
Q 014086 175 CSTSQA 180 (431)
Q Consensus 175 v~~~~~ 180 (431)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998764
No 236
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-17 Score=122.88 Aligned_cols=78 Identities=35% Similarity=0.559 Sum_probs=71.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhcc--ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
....++|||+|||..+|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999999875 589999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014086 350 SLAKPQAD 357 (431)
Q Consensus 350 ~~a~~~~~ 357 (431)
.|+++...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 237
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.2e-18 Score=123.11 Aligned_cols=75 Identities=21% Similarity=0.520 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999998764
No 238
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=127.15 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC--ccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~--~~~g~~i~v 175 (431)
.+++++|||+|||+++++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999998764 899999999999999999988654 599999999
Q ss_pred ccccccc
Q 014086 176 STSQAKY 182 (431)
Q Consensus 176 ~~~~~~~ 182 (431)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9988653
No 239
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=132.64 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999987 9999999999999999999997 999999999999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9887643
No 240
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=129.89 Aligned_cols=82 Identities=21% Similarity=0.448 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc--------C
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------K 169 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~--------~ 169 (431)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEeeeccccc
Q 014086 170 GKKIRCSTSQA 180 (431)
Q Consensus 170 g~~i~v~~~~~ 180 (431)
+++|.|.++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 67788877764
No 241
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=131.60 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
.+.+++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998854 58899999999999999999999999999999999
Q ss_pred eeccccccc
Q 014086 174 RCSTSQAKY 182 (431)
Q Consensus 174 ~v~~~~~~~ 182 (431)
+|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999988654
No 242
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=6.7e-18 Score=139.40 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.+.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8754
No 243
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=128.74 Aligned_cols=82 Identities=13% Similarity=0.357 Sum_probs=76.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc--------CC
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--------DG 344 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~--------~g 344 (431)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345899999999999999999999999999999999998 677799999999999999999999999999 57
Q ss_pred cEEEEEeccCC
Q 014086 345 QALECSLAKPQ 355 (431)
Q Consensus 345 ~~l~v~~a~~~ 355 (431)
++|.|.||.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 244
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.3e-18 Score=138.56 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=74.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+++|+++|+++|++|| |..|+|+.++. +.++|||||+|.+.++|.+|| .+|+..|.||.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 67999999987 667999999999999999999 78999999999999998
Q ss_pred cCCCC
Q 014086 353 KPQAD 357 (431)
Q Consensus 353 ~~~~~ 357 (431)
.+...
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 245
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-19 Score=140.37 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=79.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEE--------EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~ 345 (431)
+.++|||+|||..+++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3479999999999999999999999999998 99999988888899999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 014086 346 ALECSLAKPQADQ 358 (431)
Q Consensus 346 ~l~v~~a~~~~~~ 358 (431)
+|+|.+++++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999876553
No 246
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2e-17 Score=127.49 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=71.1
Q ss_pred cccEEEEecCCCC-CCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 274 QVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 274 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
..++|||+|||.. +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999999 3699999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 98 ~~~~~~ 103 (110)
T 1wf1_A 98 GEPKPD 103 (110)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 865443
No 247
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-18 Score=130.79 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=75.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34589999999999999999999999999888 677777777789999999999999999998 9999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876554
No 248
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=127.75 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCcccEEEEecCCCC-CCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEE
Q 014086 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALE 348 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~ 348 (431)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|| +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 999999999999999999999864 6999999999999999999886 4569999999
Q ss_pred EEeccCCCCCC
Q 014086 349 CSLAKPQADQK 359 (431)
Q Consensus 349 v~~a~~~~~~~ 359 (431)
|.||+......
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998665543
No 249
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=121.65 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=71.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3458999999999999999999999999999999974 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 014086 353 KPQAD 357 (431)
Q Consensus 353 ~~~~~ 357 (431)
++...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 250
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=133.42 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3457899999999999999999999999976 68999998 4799999999999999999999975 9999999999
Q ss_pred eeccccc
Q 014086 174 RCSTSQA 180 (431)
Q Consensus 174 ~v~~~~~ 180 (431)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987653
No 251
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=123.15 Aligned_cols=72 Identities=26% Similarity=0.493 Sum_probs=66.6
Q ss_pred cEEEEecCCCCC------CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EEE
Q 014086 276 KAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALE 348 (431)
Q Consensus 276 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-~l~ 348 (431)
++|||+|||..+ |+++|+++|++||.|..|+|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 34567799999999999999999999999999999 887
Q ss_pred E
Q 014086 349 C 349 (431)
Q Consensus 349 v 349 (431)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 252
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-18 Score=136.92 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ +|+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4467899999999999999999999999999987777777889999999999999999999998 999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 253
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.2e-18 Score=126.18 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=71.0
Q ss_pred CcccEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.+.++|||+|||. .+|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|||..+.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3458999999998 99999999999999999999994 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+++....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9866543
No 254
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.2e-17 Score=127.95 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=72.3
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
.....++|||+|||..+|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999997 5899999999999999999999999999999999
Q ss_pred eccCCCC
Q 014086 351 LAKPQAD 357 (431)
Q Consensus 351 ~a~~~~~ 357 (431)
|+++...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987654
No 255
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=3.8e-18 Score=121.82 Aligned_cols=75 Identities=15% Similarity=0.361 Sum_probs=71.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
+|||+|||..+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998888899999999999999999985 889999999999886
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=128.23 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=73.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccE----EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
.+.++|||+|||..+|+++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 456899999999999999999999999998 455554 455689999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 014086 349 CSLAKPQADQK 359 (431)
Q Consensus 349 v~~a~~~~~~~ 359 (431)
|.|+++.....
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99998766543
No 257
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=3.3e-17 Score=122.90 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=70.6
Q ss_pred CCcccEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 272 ASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 272 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
....++|||+|||. .+++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34468999999998 99999999999999999999993 6999999999999999999999999999999999
Q ss_pred eccCC
Q 014086 351 LAKPQ 355 (431)
Q Consensus 351 ~a~~~ 355 (431)
++++.
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 258
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=121.91 Aligned_cols=77 Identities=27% Similarity=0.533 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4568999999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=120.83 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=70.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc-CCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l-~~~~~~g~~l~v~~ 351 (431)
...++|||+|||..+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| |+..|.|++|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 44589999999999999999999999999999999874 699999999999999999998 99999999999999
Q ss_pred cc
Q 014086 352 AK 353 (431)
Q Consensus 352 a~ 353 (431)
|+
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 260
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=126.31 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4568999999999999999999999999987 55665 6799999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87653
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.3e-17 Score=122.94 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+++++++|+++|++| .|..|++. +++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 46999999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 014086 179 QAKYRLFIGNI 189 (431)
Q Consensus 179 ~~~~~l~v~~l 189 (431)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98888877763
No 262
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=6.7e-18 Score=131.72 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
.+...++|||+|||+++|+++|+++|+.| .|. .|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 576 999999987 9999999999999999999996 578999999999
Q ss_pred eccccc
Q 014086 175 CSTSQA 180 (431)
Q Consensus 175 v~~~~~ 180 (431)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987754
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=126.55 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=71.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||+.+|+++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.||..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 479999999999999999999999999999999863 69999999999999999999999999999999999986
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 443
No 264
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=123.79 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC--CeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~--g~~i~v 175 (431)
+...++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456799999999999999999999999999999999754 789999999999999999999999999 999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998765
No 265
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=120.59 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh-CCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l-~~~~~~g~~i~v~ 176 (431)
+...++|||+|||+++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999864 899999999999999999988 9999999999998
Q ss_pred ccc
Q 014086 177 TSQ 179 (431)
Q Consensus 177 ~~~ 179 (431)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 266
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=4.6e-18 Score=134.94 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=75.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhcccc---EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. +.++|||||+|.+.++|.+||. ||+..|+||.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3479999999999999999999999999 88999999988 6679999999999999999999 99999999999999
Q ss_pred eccCCC
Q 014086 351 LAKPQA 356 (431)
Q Consensus 351 ~a~~~~ 356 (431)
++.+..
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987544
No 267
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=124.25 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=69.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhcccc-EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC-CccCCcEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-YELDGQALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~-~~~~g~~l~v~~ 351 (431)
..++|||+|||..+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|+|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4479999999999999999999999999 5555552 379999999999999999999999 999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
++++..+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9876543
No 268
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=124.36 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=71.6
Q ss_pred cccEEEE--ecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc-----CCcE
Q 014086 274 QVKAVYV--KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL-----DGQA 346 (431)
Q Consensus 274 ~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~-----~g~~ 346 (431)
++++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999 669999999999999999999999998764 69999999999999999999999988 6899
Q ss_pred EEEEeccCCCCCC
Q 014086 347 LECSLAKPQADQK 359 (431)
Q Consensus 347 l~v~~a~~~~~~~ 359 (431)
|.|.|+.......
T Consensus 98 l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 98 LYLNFVEKVQWSG 110 (114)
T ss_dssp CEEEEESCCCCSS
T ss_pred EEEEecccCcccC
Confidence 9999998655443
No 269
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-18 Score=132.70 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=75.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhcccc---EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
....+|||+|||+.+|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. +|+..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34589999999999999999999999998 89999999988 6679999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 014086 350 SLAKPQA 356 (431)
Q Consensus 350 ~~a~~~~ 356 (431)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998654
No 270
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=124.02 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=70.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999986 566543 35799999999999999999999999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 271
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-18 Score=131.74 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999988 677777789999999999999999999998 999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 272
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.7e-17 Score=122.03 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=71.5
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 96 ALPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
..++.+++|||+|||+ ++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4466789999999998 99999999999999999999982 89999999999999999999999999999999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++..+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9988754
No 273
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=125.69 Aligned_cols=81 Identities=28% Similarity=0.554 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999875 8999999999999999999999999999999999
Q ss_pred ccccccc
Q 014086 177 TSQAKYR 183 (431)
Q Consensus 177 ~~~~~~~ 183 (431)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9887543
No 274
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.6e-17 Score=124.96 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=74.2
Q ss_pred CcccEEEEecCCCCCCHHHHH----HHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
.++++|||+|||..+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345899999999999999999 9999999999999974 344579999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 014086 349 CSLAKPQAD 357 (431)
Q Consensus 349 v~~a~~~~~ 357 (431)
|.|+++...
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987654
No 275
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=124.25 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=72.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 455899999999999999999999999988766 344556899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 876553
No 276
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=8.2e-18 Score=131.08 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=75.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhcccc---EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
..++|||+|||+.+|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. +|+..|+||.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3479999999999999999999999999 89999999887 6669999999999999999999 99999999999999
Q ss_pred eccCCC
Q 014086 351 LAKPQA 356 (431)
Q Consensus 351 ~a~~~~ 356 (431)
++.+..
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 277
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.4e-18 Score=135.48 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|| .+++..|.||.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 44678999999999999999999999999 67999999976 999999999999999999999 7899999999999988
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 278
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=125.14 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|+.|+ .|+++.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 355789999999999999999999999873 67888888899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 988653
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.3e-17 Score=125.47 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
.+.+++|||+|||+++++++|+ ++|++||.|..|.++. +|+++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4568999999999999999999 9999999999999874 47789999999999999999999999999999999
Q ss_pred eeccccccc
Q 014086 174 RCSTSQAKY 182 (431)
Q Consensus 174 ~v~~~~~~~ 182 (431)
+|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999988654
No 280
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4e-17 Score=127.00 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=74.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
.+++|||+|||..+|+++|+++|+.||.|..|.|+.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 347999999999999999999999999999999987643 37999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014086 354 PQADQ 358 (431)
Q Consensus 354 ~~~~~ 358 (431)
+....
T Consensus 84 ~~~~~ 88 (115)
T 3lqv_A 84 ANRAF 88 (115)
T ss_dssp HHHHT
T ss_pred CChhh
Confidence 65443
No 281
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=126.98 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=71.6
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecC----HHH----HHHHHH--HhCCCc
Q 014086 102 SEVYIGGI----PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN----VEL----ASKAID--KLNNTE 167 (431)
Q Consensus 102 ~~l~V~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~e~----a~~al~--~l~~~~ 167 (431)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 888987 689999
Q ss_pred cCCeEeeeccccc
Q 014086 168 FKGKKIRCSTSQA 180 (431)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (431)
|.||+|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987553
No 282
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=124.97 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC-----eE
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-----KK 172 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g-----~~ 172 (431)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999875 899999999999999999999999999 99
Q ss_pred eeeccccccc
Q 014086 173 IRCSTSQAKY 182 (431)
Q Consensus 173 i~v~~~~~~~ 182 (431)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999988653
No 283
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=4.6e-17 Score=126.70 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=72.3
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCE-EEEEeCCHHHHHHHHHhcCCCccCC--cEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~-afV~F~~~~~A~~Al~~l~~~~~~g--~~l~v~ 350 (431)
...+|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34688999999999999999999999999999998643 677 9999999999999999999999988 999999
Q ss_pred eccCCCCC
Q 014086 351 LAKPQADQ 358 (431)
Q Consensus 351 ~a~~~~~~ 358 (431)
|+++..-.
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99976543
No 284
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=116.19 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeE
Q 014086 98 PPHGSEVYIGGIPHDASEHD----LRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~ 172 (431)
++..++|||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34445599999999999988 55899999 599998 23 99999999999999999999999999999
Q ss_pred eeecccccccccccc
Q 014086 173 IRCSTSQAKYRLFIG 187 (431)
Q Consensus 173 i~v~~~~~~~~l~v~ 187 (431)
|+|.++..++.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999988765543
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=123.72 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999997 66664 46799999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 286
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=8.9e-17 Score=129.89 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=72.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC--cEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g--~~l~v~~ 351 (431)
...+|||+||++.+|+++|+++|++||.|.+|+|..++ ++|||||+|.+.++|.+|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34689999999999999999999999999999997543 36899999999999999999999999965 9999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+++...
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 997643
No 287
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-17 Score=125.27 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=70.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 47999999999999999999999999999999984 369999999999999999999999999999999999986
Q ss_pred C
Q 014086 355 Q 355 (431)
Q Consensus 355 ~ 355 (431)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 288
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-19 Score=136.44 Aligned_cols=84 Identities=21% Similarity=0.446 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
.+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred eEeeeccccccc
Q 014086 171 KKIRCSTSQAKY 182 (431)
Q Consensus 171 ~~i~v~~~~~~~ 182 (431)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987653
No 289
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-18 Score=132.81 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 445899999999999999999999999999886666666677779999999999999999999 9999999999999999
Q ss_pred cCCC
Q 014086 353 KPQA 356 (431)
Q Consensus 353 ~~~~ 356 (431)
.+..
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 290
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=136.94 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..+++|||+|||+++++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014086 178 SQAKYR 183 (431)
Q Consensus 178 ~~~~~~ 183 (431)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 291
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-18 Score=131.77 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...+++|||+|||+++|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44679999999999999999999999999994332222222688999999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 87653
No 292
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=6.7e-17 Score=123.68 Aligned_cols=78 Identities=27% Similarity=0.513 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
......++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 335678999999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.+.
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 998764
No 293
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=6.9e-17 Score=125.28 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=67.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcE-----EEE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-----LEC 349 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~-----l~v 349 (431)
..+|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.|+. |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 479999999999999999999999999999999876 89999999999999999999999999998 777
Q ss_pred EeccCCCC
Q 014086 350 SLAKPQAD 357 (431)
Q Consensus 350 ~~a~~~~~ 357 (431)
..+.+...
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 77765443
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=126.97 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999864 58999999999999999999999999999999999986
Q ss_pred c
Q 014086 180 A 180 (431)
Q Consensus 180 ~ 180 (431)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 295
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=113.84 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=66.1
Q ss_pred ccE-EEEecCCCCCCHHH----HHHHHhcc-ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 275 VKA-VYVKNLPRNVTQDQ----LKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 275 ~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
+.+ |||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|||..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344 99999999999987 55899999 5999981 28999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 014086 349 CSLAKPQADQ 358 (431)
Q Consensus 349 v~~a~~~~~~ 358 (431)
|.||+....-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999977654
No 296
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.4e-17 Score=128.61 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=72.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEE--EEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
..++|||+|||+.+|+++|+++|+.| .|. .|+|+.++. +.++|||||+|.+.++|.+||.. ++..|+||.|.|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 45789999999999999999999999 666 999999988 66799999999999999999985 77999999999999
Q ss_pred ccCCC
Q 014086 352 AKPQA 356 (431)
Q Consensus 352 a~~~~ 356 (431)
+.+..
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 297
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=119.70 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 35578999999999999999999999999999999996 4499999999999999999999999999999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 298
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=119.13 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|||+++|+++|+++|++||.|..|+++ ++||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999997 4499999999999999999999999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98765
No 299
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.2e-17 Score=126.94 Aligned_cols=80 Identities=30% Similarity=0.567 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++ ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999996 9999999999998877
Q ss_pred ccc
Q 014086 180 AKY 182 (431)
Q Consensus 180 ~~~ 182 (431)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 300
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=119.42 Aligned_cols=80 Identities=15% Similarity=0.320 Sum_probs=72.3
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEE-EecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
..++|||+|||+.+|+++|+++|+.||.|..| .|+.++.+ |.|||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34799999999999999999999999999999 48877644 44999999999999999999999999999999999
Q ss_pred cCCCC
Q 014086 353 KPQAD 357 (431)
Q Consensus 353 ~~~~~ 357 (431)
.+...
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98743
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-16 Score=117.20 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999996 899999999999999999999953 3799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
.+....
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 302
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.9e-17 Score=121.47 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=70.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 97 LPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
..++.++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345689999999999 99999999999999999999983 789999999999999999999999999999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 988754
No 303
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=118.84 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=67.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||+.+|+++|+++|+.||.|..| +.++.++. ||||+|.+.++|.+|+. ||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999998 33333322 99999999999999999 99999999999999887
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
+...
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5544
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.2e-16 Score=121.42 Aligned_cols=77 Identities=18% Similarity=0.382 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3457899999999999999999999999999999986 56999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87653
No 305
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=118.29 Aligned_cols=78 Identities=21% Similarity=0.423 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..| +.++.+|+ ||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 56666665 99999999999999998 999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+..+
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8654
No 306
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=133.83 Aligned_cols=85 Identities=27% Similarity=0.411 Sum_probs=78.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 677799999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 986544
No 307
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=123.77 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 357899999999999999999999999988766 345889999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 308
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.6e-16 Score=121.27 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=69.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCE-EEEEeCCHHHHHHHHHhcCCCccCC--cEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~-afV~F~~~~~A~~Al~~l~~~~~~g--~~l~v~ 350 (431)
....|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999999652 386 9999999999999999999999987 699999
Q ss_pred eccCCCC
Q 014086 351 LAKPQAD 357 (431)
Q Consensus 351 ~a~~~~~ 357 (431)
||++...
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9987753
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=118.76 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
....++|||+|||+++|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457999999999999999999999999 999999874 679999999999999999999999999999999
Q ss_pred ccccccc
Q 014086 176 STSQAKY 182 (431)
Q Consensus 176 ~~~~~~~ 182 (431)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9988653
No 310
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-17 Score=123.17 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred cEEEEecC----CCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCC----HHH----HHHHHH--hcCCCc
Q 014086 276 KAVYVKNL----PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE----RSS----AMKALK--NTEKYE 341 (431)
Q Consensus 276 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~----~~~----A~~Al~--~l~~~~ 341 (431)
..|||+|| |+.+++..|+++|+.||.|.+|.++.|+.++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred cCCcEEEEEeccC
Q 014086 342 LDGQALECSLAKP 354 (431)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (431)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=123.57 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---CCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.++ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4579999999999999999999999999999 888888777 7999999999999999999999883 356666665
Q ss_pred cccc
Q 014086 176 STSQ 179 (431)
Q Consensus 176 ~~~~ 179 (431)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 312
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.3e-16 Score=117.46 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=70.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||+.+++++|+++|++| .|..|++. .++|||||+|.+.++|.+|+..|||..+.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3789999999999999999999999 99999884 3589999999999999999999999999999999999976
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 78 ~~~ 80 (88)
T 1wg1_A 78 DAL 80 (88)
T ss_dssp CCC
T ss_pred Cce
Confidence 544
No 313
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=5e-17 Score=123.49 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=74.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||+|||..+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 77779999999999999999998 9999999999999998
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
+...
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6654
No 314
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=128.28 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccE----EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.+|||+|||+++|+++|+++|++||.| ..|+|+.+. +++++|||||+|.+.++|.+||.. |+..|.||.|.|..
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 799999999999999999999999975 689998885 566799999999999999999986 99999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+.+...
T Consensus 102 a~~~e~ 107 (123)
T 2dha_A 102 STAAEV 107 (123)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 876544
No 315
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.2e-16 Score=130.59 Aligned_cols=79 Identities=24% Similarity=0.466 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.5e-17 Score=120.48 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...++|||+|||+++|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 488776544 399999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=121.64 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=69.1
Q ss_pred cCCCCCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc-----
Q 014086 96 ALPPHGSEVYI--GGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF----- 168 (431)
Q Consensus 96 ~~~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~----- 168 (431)
....++++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 33456789999 77999999999999999999999998864 379999999999999999999999988
Q ss_pred CCeEeeecccc
Q 014086 169 KGKKIRCSTSQ 179 (431)
Q Consensus 169 ~g~~i~v~~~~ 179 (431)
.|+.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68899887764
No 318
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=3.2e-16 Score=115.29 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=62.8
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc--cCCcEEEEEe
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECSL 351 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~--~~g~~l~v~~ 351 (431)
+..+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ +++.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3479999999999999999999999999999999985 48999999999999984 45544 4699999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
|.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 319
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.1e-16 Score=137.23 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=78.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..+|+..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
....
T Consensus 94 ~~~~ 97 (213)
T 4f02_A 94 RDPS 97 (213)
T ss_dssp CCTH
T ss_pred cccc
Confidence 6543
No 320
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=118.92 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCC-CccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN-TEFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~-~~~~g~~i~v 175 (431)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456799999999999999999999999999 6666553 489999999999999999999999 9999999999
Q ss_pred cccccc
Q 014086 176 STSQAK 181 (431)
Q Consensus 176 ~~~~~~ 181 (431)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998765
No 321
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=3.1e-15 Score=135.88 Aligned_cols=82 Identities=27% Similarity=0.488 Sum_probs=74.1
Q ss_pred CcccEEEEecCCCCCCHHHHH----HHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
.+.++|||+|||+.+|+++|+ ++|+.||.|..|+|.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 345899999999999999977 8999999999999987 344689999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 014086 349 CSLAKPQAD 357 (431)
Q Consensus 349 v~~a~~~~~ 357 (431)
|.|++....
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999976553
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.1e-16 Score=121.74 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 489999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 323
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=4.6e-16 Score=117.75 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHHhCCCccCCe
Q 014086 98 PPHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (431)
Q Consensus 98 ~~~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~ 171 (431)
+..+++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45689999999963 3478999999999999999999998754 68999999999999999999999999999999
Q ss_pred Eeeeccccc
Q 014086 172 KIRCSTSQA 180 (431)
Q Consensus 172 ~i~v~~~~~ 180 (431)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998874
No 324
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.9e-16 Score=129.94 Aligned_cols=82 Identities=16% Similarity=0.400 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 325
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=4.4e-16 Score=117.84 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=72.8
Q ss_pred cccEEEEecCCC-----CCCHHHHHHHHhccccEEEEEecCCCCC-CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 014086 274 QVKAVYVKNLPR-----NVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (431)
Q Consensus 274 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l 347 (431)
++++|+|+||.. ..++++|+++|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999963 2378999999999999999999988653 4679999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 014086 348 ECSLAKPQA 356 (431)
Q Consensus 348 ~v~~a~~~~ 356 (431)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=132.88 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=71.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEE--EecCC---CCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV--VVPPA---KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--~i~~~---~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
++++|||+|||+.+|+++|+.+|+.||.|..+ +++.+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44799999999999999999999999988764 11111 12455689999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 014086 349 CSLAKPQADQ 358 (431)
Q Consensus 349 v~~a~~~~~~ 358 (431)
|.||++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999865543
No 327
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.6e-16 Score=130.46 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=78.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..||+..+.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 47999999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 328
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=4.6e-16 Score=129.61 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=78.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 37999999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 554
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.7e-16 Score=115.95 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456799999996 89999999999999999999984 4699999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 178 SQAKY 182 (431)
Q Consensus 178 ~~~~~ 182 (431)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87653
No 330
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.2e-16 Score=114.69 Aligned_cols=76 Identities=34% Similarity=0.553 Sum_probs=63.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc--cCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~--~~g~~i~ 174 (431)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3567899999999999999999999999999999999874 69999999999999984 45554 5699999
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988764
No 331
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=116.19 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=66.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||+|||..+|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|++|.|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 489999999999999999999999999999999876 489999999999999765322 3456899999999987
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 332
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=4.4e-16 Score=130.46 Aligned_cols=80 Identities=23% Similarity=0.552 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999989999999999999999999999999999999999999876
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5.7e-16 Score=125.19 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC--eEeeecc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCST 177 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g--~~i~v~~ 177 (431)
...+|||+||++.+|+++|+++|++||.|.+|+|+.. +++|||||+|.+.++|.+|++.|+|..|.| ++|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999999753 358999999999999999999999999965 9999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9865
No 334
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=4.2e-16 Score=148.77 Aligned_cols=83 Identities=14% Similarity=0.368 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=4e-16 Score=114.74 Aligned_cols=72 Identities=29% Similarity=0.606 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
...++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 9999998754 899999999999999999 999999
Q ss_pred cCCeEeeecc
Q 014086 168 FKGKKIRCST 177 (431)
Q Consensus 168 ~~g~~i~v~~ 177 (431)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 336
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=7e-16 Score=132.40 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=72.2
Q ss_pred ccEEEEecCC-CCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+++|||+||| ..+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4799999999 899999999999999999999999864 7999999999999999999999999999999999997
Q ss_pred CCC
Q 014086 354 PQA 356 (431)
Q Consensus 354 ~~~ 356 (431)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 544
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=126.82 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE--------EEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV--------RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v--------~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
...+++|||+|||+++|+++|+.+|++||.|..| ++. .+|+++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999998764 333 35889999999999999999999999999999
Q ss_pred CeEeeecccccc
Q 014086 170 GKKIRCSTSQAK 181 (431)
Q Consensus 170 g~~i~v~~~~~~ 181 (431)
|+.|+|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998753
No 338
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=7.4e-16 Score=134.20 Aligned_cols=83 Identities=14% Similarity=0.454 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 765
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=118.15 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=69.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCC---CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG---QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+|+..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 347999999999999999999999999999 888888776 5779999999999999999999985 3777877777
Q ss_pred eccCCC
Q 014086 351 LAKPQA 356 (431)
Q Consensus 351 ~a~~~~ 356 (431)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 655433
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.1e-15 Score=129.77 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCC-----CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecC
Q 014086 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309 (431)
Q Consensus 235 ~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (431)
......|+.......+.+......+......+.+.. .....++|||+|||+.+|+++|+++|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 345555665553344445555455544422221111 122458999999999999999999999999999999998
Q ss_pred CCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCC
Q 014086 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 310 ~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 356 (431)
+.. +.++|||||+|.+.++|.+|+..++ ..|+|++|.|.++..-.
T Consensus 144 ~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 144 TLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp CTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred CCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 875 5569999999999999999998665 59999999999987543
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=7.9e-16 Score=119.70 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHHhCCCccCC--eEeeec
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCS 176 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~e~a~~al~~l~~~~~~g--~~i~v~ 176 (431)
.-..|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456789999999999999999999999999998764 3677 9999999999999999999999988 999999
Q ss_pred cccccc
Q 014086 177 TSQAKY 182 (431)
Q Consensus 177 ~~~~~~ 182 (431)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998653
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=3.7e-16 Score=121.12 Aligned_cols=70 Identities=27% Similarity=0.438 Sum_probs=63.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 35689999999999999999999999999999999764 89999999999999999999999999998433
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=1.4e-15 Score=111.84 Aligned_cols=71 Identities=20% Similarity=0.437 Sum_probs=66.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhcc----c-------cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHH----G-------RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~ 342 (431)
..++|||+|||+.+|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8999999876 599999999999999999 9999999
Q ss_pred CCcEEEEEe
Q 014086 343 DGQALECSL 351 (431)
Q Consensus 343 ~g~~l~v~~ 351 (431)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=9.5e-16 Score=131.58 Aligned_cols=84 Identities=21% Similarity=0.525 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 345
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=3.7e-16 Score=130.24 Aligned_cols=80 Identities=23% Similarity=0.570 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++ +++..+.|++|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 6799999999999999999999999999999999999899999999999999999999996 899999999999999876
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.3e-15 Score=116.78 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcce-EEEEecCHHHHHHHHHHhCCCccCC--eEeeecccc
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTSQ 179 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~e~a~~al~~l~~~~~~g--~~i~v~~~~ 179 (431)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 386 9999999999999999999999987 699999998
Q ss_pred ccc
Q 014086 180 AKY 182 (431)
Q Consensus 180 ~~~ 182 (431)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.1e-15 Score=119.26 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34589999996 799999999999999999999963 4799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014086 353 KPQADQ 358 (431)
Q Consensus 353 ~~~~~~ 358 (431)
++....
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876543
No 348
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.7e-15 Score=129.84 Aligned_cols=83 Identities=28% Similarity=0.557 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||+|||+++|+++|+++|+.||.|..|+++.+..+|+++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999998999999999999999999999965 899999999999998
Q ss_pred cccc
Q 014086 179 QAKY 182 (431)
Q Consensus 179 ~~~~ 182 (431)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 8654
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=2.6e-15 Score=129.91 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=71.3
Q ss_pred CCCCcccEEEEecCCCCC---------CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC
Q 014086 270 SGASQVKAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (431)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~ 340 (431)
+.....++|||+||+..+ ++++|+.+|++||.|.+|+|+.. ||||||+|.+.++|..|+..|||.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 334567899999999998 79999999999999999999864 699999999999999999999999
Q ss_pred cc------------CCcEEEEEeccCCCCC
Q 014086 341 EL------------DGQALECSLAKPQADQ 358 (431)
Q Consensus 341 ~~------------~g~~l~v~~a~~~~~~ 358 (431)
.| .|+.|.|.||+.....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCCH
Confidence 99 8999999999866543
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3.2e-15 Score=113.15 Aligned_cols=82 Identities=13% Similarity=0.270 Sum_probs=71.7
Q ss_pred cccEEEEecC--CCCC--------CHHHHHHHHhccccEEEEEecCCCCC--CCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 274 QVKAVYVKNL--PRNV--------TQDQLKKLFEHHGRITKVVVPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 274 ~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~v~~v~i~~~~~~--~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
++++|.+.|+ |..+ .+++|++.|++||.|.+|+|+++..+ ..++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4589999998 3333 34799999999999999999998865 3568999999999999999999999999
Q ss_pred cCCcEEEEEeccCC
Q 014086 342 LDGQALECSLAKPQ 355 (431)
Q Consensus 342 ~~g~~l~v~~a~~~ 355 (431)
|+||.|+|.|+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8e-16 Score=113.30 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35799999999999999999999999999999999865 69999999999999986542 234468999999988
Q ss_pred cccc
Q 014086 179 QAKY 182 (431)
Q Consensus 179 ~~~~ 182 (431)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=3.2e-15 Score=116.62 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.+...++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3557899999996 79999999999999999999985 469999999999999999999999999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 98765
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.7e-15 Score=126.44 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. |+++|||||+|.+.++|.+|++.+ +..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999999864 999999999999999999999654 5689999999987653
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=111.94 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=69.9
Q ss_pred CcccEEEEecCCCCC-----------CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 273 SQVKAVYVKNLPRNV-----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~-----------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
.++++|+|+||.... ++++|+++|++||.|..|.| .++. ++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 456899999994433 25899999999999999977 3332 58999999999999999999999999
Q ss_pred cCCcEEEEEeccCCCCC
Q 014086 342 LDGQALECSLAKPQADQ 358 (431)
Q Consensus 342 ~~g~~l~v~~a~~~~~~ 358 (431)
|.|++|+|.|+.+....
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999876553
No 355
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=5.9e-15 Score=123.89 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC---CeEeee
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIRC 175 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~---g~~i~v 175 (431)
...++|||+|||+++|+++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|++.|||..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999986 4999999999999999999999999998776 499999
Q ss_pred cccc
Q 014086 176 STSQ 179 (431)
Q Consensus 176 ~~~~ 179 (431)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=111.30 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=72.8
Q ss_pred cCCCCCCEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 014086 96 ALPPHGSEVYIGGIPHDAS-----------EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~ 164 (431)
..+..+++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3567899999999944332 5899999999999999966 553 379999999999999999999999
Q ss_pred CCccCCeEeeeccccccccc
Q 014086 165 NTEFKGKKIRCSTSQAKYRL 184 (431)
Q Consensus 165 ~~~~~g~~i~v~~~~~~~~l 184 (431)
|..|.||.|+|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998876543
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=7.9e-15 Score=126.88 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 98 PPHGSEVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
....++|||+||+..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|..|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999986 389999999999999999999999999
Q ss_pred ------------CCeEeeecccccc
Q 014086 169 ------------KGKKIRCSTSQAK 181 (431)
Q Consensus 169 ------------~g~~i~v~~~~~~ 181 (431)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=8.1e-15 Score=123.08 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988766 4668999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 180 AK 181 (431)
Q Consensus 180 ~~ 181 (431)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=2.3e-14 Score=125.67 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=74.6
Q ss_pred CcccEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.++++|||+|||. .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4458999999999 99999999999999999999999986 79999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014086 352 AKPQAD 357 (431)
Q Consensus 352 a~~~~~ 357 (431)
+++...
T Consensus 107 a~~~~~ 112 (229)
T 2adc_A 107 SKHQNV 112 (229)
T ss_dssp CSCCCC
T ss_pred ecCccc
Confidence 986643
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=1.6e-14 Score=109.37 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 100 HGSEVYIGGI--PHDAS--------EHDLRDFCQSIGEVTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 100 ~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
+++.|.|.|+ |.++. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 4689999999999999999988765 4689999999999999999999999999
Q ss_pred cCCeEeeeccccc
Q 014086 168 FKGKKIRCSTSQA 180 (431)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (431)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=2.7e-14 Score=127.84 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
......++|||+|||+++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34456689999999999999999999999999999999765 599999999999999999999999999999999
Q ss_pred EeccCC
Q 014086 350 SLAKPQ 355 (431)
Q Consensus 350 ~~a~~~ 355 (431)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 999753
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=1.6e-14 Score=111.34 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=70.9
Q ss_pred cccEEEEecCCC--CC---CHHHHHHHHhccccEEEEEecCCCCC----CCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 274 QVKAVYVKNLPR--NV---TQDQLKKLFEHHGRITKVVVPPAKPG----QEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 274 ~~~~l~V~nLp~--~~---t~~~L~~~F~~~G~v~~v~i~~~~~~----~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
++++|+|+|+-. .+ .+++|++.|++||.|.+|+|++++.+ ..++||+||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 347999999842 22 36899999999999999999988653 4567999999999999999999999999999
Q ss_pred cEEEEEeccCC
Q 014086 345 QALECSLAKPQ 355 (431)
Q Consensus 345 ~~l~v~~a~~~ 355 (431)
|.|+|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=7.3e-15 Score=111.08 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=63.2
Q ss_pred EecCCCCCCHHHHHHHH------------hccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 014086 280 VKNLPRNVTQDQLKKLF------------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (431)
Q Consensus 280 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l 347 (431)
+.|||..+++++|++.| ++||.|.+|+|+++.. +.++|||||+|.+.++|.+|+..|||+.|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 9999999999998876 4569999999999999999999999999999999
Q ss_pred EEEec
Q 014086 348 ECSLA 352 (431)
Q Consensus 348 ~v~~a 352 (431)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=120.99 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=72.9
Q ss_pred cEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 276 KAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 276 ~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
++|||+|||. .+|+++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 7999999999 99999999999999999999999986 78999999999999999999999999999999999986
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 79 ~~~ 81 (198)
T 1qm9_A 79 QNV 81 (198)
T ss_dssp CSC
T ss_pred CCc
Confidence 653
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=3.4e-14 Score=109.51 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeeCCC----CCCCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 99 PHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 99 ~~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
+++++|+|+|+-. +-.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3689999999942 224789999999999999999999865 4678899999999999999999999999999
Q ss_pred CeEeeeccccc
Q 014086 170 GKKIRCSTSQA 180 (431)
Q Consensus 170 g~~i~v~~~~~ 180 (431)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998763
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-13 Score=100.76 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=62.9
Q ss_pred cEEEEecCC-------CCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 276 KAVYVKNLP-------RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 276 ~~l~V~nLp-------~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
.+|.|.-.. ..+|+++|+++|++||.|..|+|+. .++|||||+|.+.++|..|+..+++ +.|++|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 455555443 4689999999999999999999983 3589999999999999999998654 6799999
Q ss_pred EEeccCCCC
Q 014086 349 CSLAKPQAD 357 (431)
Q Consensus 349 v~~a~~~~~ 357 (431)
|.|+++...
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999986654
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.2e-14 Score=109.93 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 106 IGGIPHDASEHDLRDFC------------QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 106 V~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
+.|||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777666665 9999999999998765 7899999999999999999999999999999999
Q ss_pred eeccc
Q 014086 174 RCSTS 178 (431)
Q Consensus 174 ~v~~~ 178 (431)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=3.5e-13 Score=103.08 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=68.3
Q ss_pred CcccEEEEecCCCCC----------CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 014086 273 SQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~ 342 (431)
.++++|.+.|+=... .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+..|||+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 346899999983321 246889999999999999997764 479999999999999999999999999
Q ss_pred CCcEEEEEeccCCC
Q 014086 343 DGQALECSLAKPQA 356 (431)
Q Consensus 343 ~g~~l~v~~a~~~~ 356 (431)
+||.|+|.|+....
T Consensus 81 ~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 AGKMITAAYVPLPT 94 (114)
T ss_dssp TTEECEEEEECHHH
T ss_pred CCEEEEEEEEcHHH
Confidence 99999999987543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1.5e-12 Score=118.83 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.6
Q ss_pred CCcccEEEEec--CCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC---Cc-
Q 014086 272 ASQVKAVYVKN--LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQ- 345 (431)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~---g~- 345 (431)
..++.+|||+| |++.+|+++|+++|++||.|.+|.+.+ +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34568999999 578999999999999999999998876 2699999999999999999999998873 45
Q ss_pred -EEEEEecc
Q 014086 346 -ALECSLAK 353 (431)
Q Consensus 346 -~l~v~~a~ 353 (431)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888885
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=2.3e-12 Score=98.50 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 98 PPHGSEVYIGGIPHDA----------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
|.++++|.|.|+=..- .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899999983321 235789999999999999997653 59999999999999999999999999
Q ss_pred cCCeEeeecccc
Q 014086 168 FKGKKIRCSTSQ 179 (431)
Q Consensus 168 ~~g~~i~v~~~~ 179 (431)
+.||.|+|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.3e-12 Score=94.00 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 101 GSEVYIGGIP-------HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 101 ~~~l~V~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
..+|.|.-.. .++|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|.+|++.+ ..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 4567776654 458999999999999999999998 467999999999999999999864 44789999
Q ss_pred eecccccc
Q 014086 174 RCSTSQAK 181 (431)
Q Consensus 174 ~v~~~~~~ 181 (431)
+|.++..+
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998754
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=2.3e-12 Score=117.64 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc---CCe
Q 014086 97 LPPHGSEVYIGG--IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGK 171 (431)
Q Consensus 97 ~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~---~g~ 171 (431)
...++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356789999999 588999999999999999999988753 489999999999999999999999987 355
Q ss_pred --Eeeecccc
Q 014086 172 --KIRCSTSQ 179 (431)
Q Consensus 172 --~i~v~~~~ 179 (431)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56666653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=86.12 Aligned_cols=73 Identities=26% Similarity=0.313 Sum_probs=62.8
Q ss_pred cccEEEEecCCC----CCCH----HHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 014086 274 QVKAVYVKNLPR----NVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (431)
Q Consensus 274 ~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~ 345 (431)
+..+|+|.-++. .+-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |||..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 346888887762 3333 6789999999999999999874 8999999999999998 999999999
Q ss_pred EEEEEeccCC
Q 014086 346 ALECSLAKPQ 355 (431)
Q Consensus 346 ~l~v~~a~~~ 355 (431)
.|+|.++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=8.4e-11 Score=89.69 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=67.7
Q ss_pred CcccEEEEecCCCC-CCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCC-HHHHHHHHHhcC--CCccCCcEEE
Q 014086 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALKNTE--KYELDGQALE 348 (431)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~-~~~A~~Al~~l~--~~~~~g~~l~ 348 (431)
.....|+|+||+.. ++.++|+++|+.||.|.+|.+.++. -.|||+|.+ ..+|..|+..|| +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34479999999999 9999999999999999999999886 469999999 899999999995 7889999999
Q ss_pred EEecc
Q 014086 349 CSLAK 353 (431)
Q Consensus 349 v~~a~ 353 (431)
+.+..
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98765
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.8e-11 Score=90.22 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecC-HHHHHHHHHHhC--CCccCCeEee
Q 014086 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN-VELASKAIDKLN--NTEFKGKKIR 174 (431)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~e~a~~al~~l~--~~~~~g~~i~ 174 (431)
+.++.|+|+||+++ ++.++|+++|++||.|..|.+.++.. +|||+|.+ .++|..|+..++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 99999999999999999999988743 69999999 899999999984 7778898887
Q ss_pred ecccc
Q 014086 175 CSTSQ 179 (431)
Q Consensus 175 v~~~~ 179 (431)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76543
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=8.3e-11 Score=83.67 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 99 PHGSEVYIGGIPH----DASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 99 ~~~~~l~V~nLp~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
|+..||+|.-++. +.-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888888762 2323 6799999999999999998763 8999999999999997 99999999
Q ss_pred eEeeeccccc
Q 014086 171 KKIRCSTSQA 180 (431)
Q Consensus 171 ~~i~v~~~~~ 180 (431)
|.|+|+.+.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998774
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.8e-10 Score=81.31 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=62.1
Q ss_pred cccEEEEecCCCC-----CCH----HHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 274 QVKAVYVKNLPRN-----VTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 274 ~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
+..+|+|.-++.. +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+||. |||..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3479999988642 322 5689999999999999999885 9999999999999998 99999999
Q ss_pred cEEEEEeccC
Q 014086 345 QALECSLAKP 354 (431)
Q Consensus 345 ~~l~v~~a~~ 354 (431)
|.|+|.+..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=8.8e-10 Score=78.71 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCCCCCEEEEcCCCCC-----C-C---HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 97 LPPHGSEVYIGGIPHD-----A-S---EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~-----~-t---~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
.-|+..||+|.-++.. . . -.+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456789999988743 2 2 15689999999999999999873 9999999999999997 99999
Q ss_pred cCCeEeeecccc
Q 014086 168 FKGKKIRCSTSQ 179 (431)
Q Consensus 168 ~~g~~i~v~~~~ 179 (431)
+.||.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.3e-09 Score=93.25 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCHHHHHHHHhccccEEEEEecCCCC----CCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 287 VTQDQLKKLFEHHGRITKVVVPPAKP----GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 287 ~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
-.+++|+..|++||.|.+|.|+++.. ++.++|++||+|.+.++|.+|+..|||+.|+||.|.+.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 45689999999999999999985543 4467899999999999999999999999999999999998643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=4e-09 Score=91.65 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCC-----CCCCHHHHHHHhhccCCeEEEEEeeCCC----CCCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 98 PPHGSEVYIGGIP-----HDASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 98 ~~~~~~l~V~nLp-----~~~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
...++.+.+.|+- .+-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|||..+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3345666776663 2345678999999999999999986544 458999999999999999999999999999
Q ss_pred CCeEeeeccccc
Q 014086 169 KGKKIRCSTSQA 180 (431)
Q Consensus 169 ~g~~i~v~~~~~ 180 (431)
.||.|.+.+...
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999988763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=6e-08 Score=70.50 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcc-----ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
++|-+-|||-.++...|+.+..++ |.|..|.+.++. +=|+|+|.+...|-+|.-.|+|..|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999999 999999999997 569999999999999999999999999999986
Q ss_pred ec
Q 014086 351 LA 352 (431)
Q Consensus 351 ~a 352 (431)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.2e-07 Score=66.11 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
..++|-|-|||..++...|+.++..+ |.|..|.+..+ .+-|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47999999999999999999999999 99999999887 56699999999999999889999999999999
Q ss_pred ecc
Q 014086 175 CST 177 (431)
Q Consensus 175 v~~ 177 (431)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=3e-06 Score=61.30 Aligned_cols=87 Identities=18% Similarity=0.304 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
-.++|.|.|||..+.++.|.-+|+.- |.|.+|.... +-|+|+|.+.+.|++.|+ ...+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 46899999999999999999999772 6999998753 569999999999999994 447889999999
Q ss_pred eccccc--cccccccCCCCCCCH
Q 014086 175 CSTSQA--KYRLFIGNIPRNWGS 195 (431)
Q Consensus 175 v~~~~~--~~~l~v~~lp~~~~~ 195 (431)
|.+..+ ..+|++.+|++.++.
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTSG 100 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCCC
Confidence 977654 468999999987653
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=6.8e-06 Score=59.78 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=63.3
Q ss_pred cEEEEecCCCCC-C----HHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 276 KAVYVKNLPRNV-T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 276 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
++|+|.||+..+ . .+.++++|..|+.+.....++.- .-..|.|.++++|.+|...||+..|.|+.|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 689999998765 2 25789999999988877776654 247999999999999999999999999999999
Q ss_pred eccCC
Q 014086 351 LAKPQ 355 (431)
Q Consensus 351 ~a~~~ 355 (431)
|+.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99843
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=2.5e-05 Score=56.85 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 101 GSEVYIGGIPHDA-S----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 101 ~~~l~V~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
.++|+|.||+.++ . .+.++++|..|+++......+.. .-..|.|.++++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998764 2 25789999999999998888763 24789999999999999999999999999999
Q ss_pred ccccc
Q 014086 176 STSQA 180 (431)
Q Consensus 176 ~~~~~ 180 (431)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88873
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00027 Score=51.10 Aligned_cols=75 Identities=29% Similarity=0.336 Sum_probs=62.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhc-----cccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEH-----HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~-----~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
..+|.|.|||..++++.|.-+|++ =|.|..|.... +-|+|+|.+...|.+.|.+ ..+.|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 379999999999999999999987 25799988865 3599999999999999864 356899999999
Q ss_pred EeccCCCCC
Q 014086 350 SLAKPQADQ 358 (431)
Q Consensus 350 ~~a~~~~~~ 358 (431)
....+....
T Consensus 79 ~P~~~~~~~ 87 (104)
T 2dhx_A 79 RPAPPRAPA 87 (104)
T ss_dssp EECCCCCCC
T ss_pred EcCCCCCcc
Confidence 886555443
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00017 Score=51.68 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=56.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCC--CcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
+.|-||+||+.+|++++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998888777766544322 2345999999999999999999998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00029 Score=50.40 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCC--cCCEEEEEeCCHHHHHHHHHhcCCCccCCc-----EEE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDGQ-----ALE 348 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-----~l~ 348 (431)
++|.|++||+.+|++++.+.++....+........+.... .-.-|||.|.+.+++..-.+.++|+.|-+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998887777655543221 123599999999999999999999887532 345
Q ss_pred EEecc
Q 014086 349 CSLAK 353 (431)
Q Consensus 349 v~~a~ 353 (431)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.0015 Score=48.90 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=58.8
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC-cEEEEEec
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QALECSLA 352 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g-~~l~v~~a 352 (431)
..+.|.|-+.|... ...|...|++||.|.+...... ..+-.|+|.+..+|++||. .||..|+| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34789999999885 5677778999999999887321 3699999999999999997 59999985 66777776
Q ss_pred c
Q 014086 353 K 353 (431)
Q Consensus 353 ~ 353 (431)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00065 Score=50.90 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=58.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC-eEeeeccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g-~~i~v~~~ 178 (431)
..+.|.|-+.|+.. ...|..+|++||.|.+..... ......|+|.+..+|++|| ..||..|.| -.|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 46889999999985 567889999999999888621 2568999999999999999 579999985 55666654
Q ss_pred c
Q 014086 179 Q 179 (431)
Q Consensus 179 ~ 179 (431)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.30 E-value=0.00053 Score=48.89 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=44.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
..++| ++|..+...||.++|+.||. ..|+.+.| ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 56777 99999999999999999984 33444444 379999999999999998763
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.28 E-value=0.0011 Score=47.36 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=46.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~ 164 (431)
|.....++| ++|......||.++|+.||-|. |+.+-| ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 444556677 9999999999999999999554 555443 369999999999999997653
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.19 E-value=0.00051 Score=49.16 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=45.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
..++| ++|..+...||.++|+.||. ..|..+.|. .|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 56666 99999999999999999984 456666553 79999999999999999764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=0.0016 Score=46.77 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=57.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCC--cCCEEEEEeCCHHHHHHHHHhcCCCccCC-----cEEE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~rg~afV~F~~~~~A~~Al~~l~~~~~~g-----~~l~ 348 (431)
.+|.|+.||+.+|++++.+.++..-.+........+.+.. .-.-|||.|.+.++...-.+.++|..|-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 6899999999999999998888776655544444332221 11348999999999999999999987743 2455
Q ss_pred EEecc
Q 014086 349 CSLAK 353 (431)
Q Consensus 349 v~~a~ 353 (431)
|++|.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66664
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.0011 Score=47.61 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCC--CCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
++-.|-||.||+.+|++++.+.++.+-.+.....+....+. ..-.-|||.|.+.++.....+..+|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 46689999999999999988888776554333332222211 11235899999999999999998887754
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.57 E-value=0.0029 Score=48.05 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=56.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEE-EEecCCCC-------------CCCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKP-------------GQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~-------------~~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
..|.|-+.|...+. .+.+.|++||.|.. +.+.+... .....++..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 57888888777655 45567999999876 33322110 00124688999999999999997 59999
Q ss_pred cCCcEEEEEeccC
Q 014086 342 LDGQALECSLAKP 354 (431)
Q Consensus 342 ~~g~~l~v~~a~~ 354 (431)
|+|..|-|.+.++
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999988764
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0029 Score=45.28 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=43.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~ 164 (431)
.++| ++|......||.++|+.||- ..|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999994 34555543 369999999999999998664
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.04 E-value=0.0034 Score=59.32 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~ 161 (431)
.++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 5899997 79999999999999999999999998753 4699999999999998774
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.69 E-value=0.012 Score=44.69 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeC--------CCCCC-----CcceEEEEecCHHHHHHHHHHhCC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKG--------KDSSE-----NKGFAFVTFRNVELASKAIDKLNN 165 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~--------~~~g~-----~~g~afV~f~~~e~a~~al~~l~~ 165 (431)
..+.|.|-+.|.+.+ ..|-++|++||.|..- .+.+. +.+.+ ......|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 357788999977765 4577899999998762 11110 00011 2456789999999999999 5799
Q ss_pred CccCCeEeeecccc
Q 014086 166 TEFKGKKIRCSTSQ 179 (431)
Q Consensus 166 ~~~~g~~i~v~~~~ 179 (431)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887665
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.0058 Score=57.75 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=42.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
+.|+|. .|..+++.+|.++|++||.|.++.+..++ .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 789997 79999999999999999999999998764 24999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.72 E-value=1.3 Score=42.70 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=46.3
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
....++|+ +|..+...+|.++|+.||. .+|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34677776 9999999999999999995 45665554 379999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.69 E-value=1.4 Score=42.49 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCC
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~ 165 (431)
...++|+ +|..+...+|.++|+.||.| .|+.+- ...|||.|.+.+.|..++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4466666 89999999999999999954 444432 44699999999999999988753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.14 E-value=8.8 Score=25.78 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhccc-----cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 285 RNVTQDQLKKLFEHHG-----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 285 ~~~t~~~L~~~F~~~G-----~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++..+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3456667776665433 377888855 378998854 46778888999999999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.25 E-value=24 Score=24.33 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~ 164 (431)
..+.|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++-..|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 46889999999999999988888888876667654 5679999999999999998764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=69.13 E-value=25 Score=24.20 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=44.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l 337 (431)
+-|.|-|+|..+-..++--.....|---.|..+. |.|.|.|.+.++-..|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 5788999999999888877777777656666553 67999999999999999876
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.18 E-value=42 Score=22.27 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=40.4
Q ss_pred EEEEcCC-CCCCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 103 EVYIGGI-PHDASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 103 ~l~V~nL-p~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+|||..= -..+...+|..++..-+ .|-.|.+. ..|.||+..... |..+++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555322 22366777887776543 35667664 347888887644 667888889999999999887
Q ss_pred cc
Q 014086 177 TS 178 (431)
Q Consensus 177 ~~ 178 (431)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.26 E-value=28 Score=27.67 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=35.7
Q ss_pred cEEEEecCCC-C--------CCHHHHHHHH--hccccEEEEEecCCCCCCCcCCEEEEEeCCHHH
Q 014086 276 KAVYVKNLPR-N--------VTQDQLKKLF--EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329 (431)
Q Consensus 276 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~ 329 (431)
-...|-|+|. . .+...|++.| +.|..+. |+.+....+. +|++.|.|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh--~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGH--SGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBE--EEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCC--ceeEEEEecCChH
Confidence 3677888887 2 3457899977 9998755 5555555443 5899999987443
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.99 E-value=52 Score=26.15 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=37.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEEeeCCCCCCCcceEEEEecCHH-HHHHHH
Q 014086 103 EVYIGGIPH-D--------ASEHDLRDFC--QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE-LASKAI 160 (431)
Q Consensus 103 ~l~V~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e-~a~~al 160 (431)
++.|-|+|. . .+..+|++.| +.|.++.-. .+..+ ....|+|.|.|.+.- .-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccC--CCCceeEEEEecCChHHHHHHH
Confidence 567788886 2 3457899977 999887744 44443 336899999997743 344444
No 409
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.46 E-value=13 Score=39.68 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=11.8
Q ss_pred cceEEEEecCHHHHHHHHHH
Q 014086 143 KGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 143 ~g~afV~f~~~e~a~~al~~ 162 (431)
.+.++|.-.+.+-|......
T Consensus 227 g~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 227 KQRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp TCEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEcCcHHHHHHHHHH
Confidence 34567777776665554433
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.25 E-value=17 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=17.9
Q ss_pred HHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeC
Q 014086 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (431)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~ 325 (431)
+++.++|...|.|...... +|||||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4556677777887776542 599999975
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.12 E-value=86 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.2
Q ss_pred CeEEEEEeeCCCCCCCcceEEEEec
Q 014086 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (431)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~f~ 151 (431)
.|+.|++.+-...|+-++||-|+|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888887667899999999995
No 412
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.04 E-value=15 Score=39.14 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.3
Q ss_pred EEecCHHHHHHHH
Q 014086 148 VTFRNVELASKAI 160 (431)
Q Consensus 148 V~f~~~e~a~~al 160 (431)
|.+.|++-....+
T Consensus 269 IlV~Tpe~L~~~L 281 (1108)
T 3l9o_A 269 CLVMTTEILRSML 281 (1108)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEeChHHHHHHH
Confidence 3444444433333
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.55 E-value=1.8e+02 Score=20.08 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=38.4
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
-|+--+....+..+|++.++. |+ .|..|..+....+. --|||++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHh
Confidence 344445678999999999887 55 47777665544332 2599999888777765443
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.25 E-value=1.4e+02 Score=18.94 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~ 162 (431)
.++.|.++.-..-...|...+.. .-|..+.+-. ..+.+.|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHH
Confidence 57889999888788899999998 7888887743 366788998866667777754
No 415
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.98 E-value=1e+02 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.2
Q ss_pred CeEEEEEeeCCCCCCCcceEEEEec
Q 014086 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (431)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~f~ 151 (431)
.|++|+|.+-...|+-++||-|+|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888887667899999999995
No 416
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.72 E-value=1.1e+02 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.0
Q ss_pred CeEEEEEeeCCCCCCCcceEEEEec
Q 014086 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (431)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~f~ 151 (431)
.|+.|+|.+-...|+-++||-|+|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 5778888877667899999999995
No 417
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.49 E-value=2.1e+02 Score=19.81 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 302 v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
|..|.++.. -.||.||++...++...+++.+.|
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 677777653 369999999999998888877655
No 418
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=20.35 E-value=22 Score=35.00 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHhhcc
Q 014086 117 DLRDFCQSI 125 (431)
Q Consensus 117 ~l~~~f~~~ 125 (431)
.|..+|..+
T Consensus 385 ~Ll~~F~~~ 393 (649)
T 3tj1_A 385 TLTTLFKTH 393 (649)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 344455543
Done!