BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014088
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/390 (80%), Positives = 332/390 (85%), Gaps = 3/390 (0%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPK
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
CRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLI
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 253
Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
HSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNI
Sbjct: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313
Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
VTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373
Query: 273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTV
Sbjct: 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 433
Query: 333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
CLEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 434 CLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492
Query: 393 TYWVXXXXXXXXXXXXATQAG--FGFAGNG 420
YW+ A G F F G
Sbjct: 493 AYWMDEEDDTMGATTVAAPQGATFDFGQGG 522
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 46/248 (18%)
Query: 144 ALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV 201
+LPA+ ++S+D+ + +A LS + I+ VI++GV PR V+ L R P +
Sbjct: 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 134
Query: 202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-------------------------- 235
A + NI +G T+ +I+H A+P + L
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194
Query: 236 ----------------LTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLL 279
L ++ K S+ + A WT+SN G L L+
Sbjct: 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA-LARLI 253
Query: 280 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339
+ + E+ +A WA+S S G+N++I+ ++ G L +LL P P ++ L + N
Sbjct: 254 HSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312
Query: 340 ILKAGEAE 347
I+ +A+
Sbjct: 313 IVTGDDAQ 320
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDS 90
+++ EA W ++NI +G + + VI+ G + V LL + D++++A WA+ N +G S
Sbjct: 344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403
Query: 91 PKCRDLVLSNGALMPL 106
++S G + PL
Sbjct: 404 HDQIKYLVSEGCIKPL 419
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDS 90
+V A + NI +G T+ +IDH A+P + LL+ ++++A W + N+ +
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132
V++ G + PL+ + A+ + + A W +SN G
Sbjct: 361 KDQIQAVINAGIIGPLV-NLLQTAEFDIKKEAAWAISNATSG 401
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 628 bits (1620), Expect = e-180, Method: Compositional matrix adjust.
Identities = 312/390 (80%), Positives = 332/390 (85%), Gaps = 3/390 (0%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPK
Sbjct: 96 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 155
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
CRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLI
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 215
Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
HSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNI
Sbjct: 216 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 275
Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
VTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 276 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 335
Query: 273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTV
Sbjct: 336 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 395
Query: 333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
CLEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 396 CLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 393 TYWVXXXXXXXXXXXXATQAG--FGFAGNG 420
YW+ A G F F G
Sbjct: 455 AYWMDEEDDTMGATTVAAPQGATFDFGQGG 484
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 46/248 (18%)
Query: 144 ALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV 201
+LPA+ ++S+D+ + +A LS + I+ VI++GV PR V+ L R P +
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-------------------------- 235
A + NI +G T+ +I+H A+P + L
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 236 ----------------LTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLL 279
L ++ K S+ + A WT+SN G L L+
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA-LARLI 215
Query: 280 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339
+ + E+ +A WA+S S G+N++I+ ++ G L +LL P P ++ L + N
Sbjct: 216 HSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 274
Query: 340 ILKAGEAE 347
I+ +A+
Sbjct: 275 IVTGDDAQ 282
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDS 90
+++ EA W ++NI +G + + VI+ G + V LL + D++++A WA+ N +G S
Sbjct: 306 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 365
Query: 91 PKCRDLVLSNGALMPL 106
++S G + PL
Sbjct: 366 HDQIKYLVSEGCIKPL 381
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDS 90
+V A + NI +G T+ +IDH A+P + LL+ ++++A W + N+ +
Sbjct: 263 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 322
Query: 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132
V++ G + PL+ + A+ + + A W +SN G
Sbjct: 323 KDQIQAVINAGIIGPLV-NLLQTAEFDIKKEAAWAISNATSG 363
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/364 (60%), Positives = 259/364 (71%), Gaps = 3/364 (0%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
CRD VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
+ +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTGDD+QTQ I+N AL LL LL+ K+SIKKEACWTISNITAGN
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
L+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
V L GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++
Sbjct: 380 VALNGLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
Query: 392 ETYW 395
E Y+
Sbjct: 439 EHYF 442
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDS 90
+++ EA W ++NI +G + VID P + +L + R++A WA+ N +G S
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 91 PKCRDLVLSNGALMPL 106
+ ++ G + PL
Sbjct: 351 AEQIKYLVELGCIKPL 366
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFE-IKKEA 290
++ L + +++ E+ W ++NI +GN + P+ LL++EFE ++++A
Sbjct: 69 FVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Query: 291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
WA+ N +G S +++ + PL L +
Sbjct: 128 VWALGN-IAGDSTMCRDYVLDCNILPPLLQLFS 159
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/364 (60%), Positives = 259/364 (71%), Gaps = 3/364 (0%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
CRD VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
+ +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTGDD+QTQ I+N AL LL LL+ K+SIKKEACWTISNITAGN
Sbjct: 258 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
L+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
V L GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++
Sbjct: 377 VALNGLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 435
Query: 392 ETYW 395
E Y+
Sbjct: 436 EHYF 439
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDS 90
+++ EA W ++NI +G + VID P + +L + R++A WA+ N +G S
Sbjct: 288 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 347
Query: 91 PKCRDLVLSNGALMPL 106
+ ++ G + PL
Sbjct: 348 AEQIKYLVELGCIKPL 363
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFE-IKKEA 290
++ L + +++ E+ W ++NI +GN + P+ LL++EFE ++++A
Sbjct: 66 FVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 124
Query: 291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
WA+ N +G S +++ + PL L +
Sbjct: 125 VWALGN-IAGDSTMCRDYVLDCNILPPLLQLFS 156
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 326 IVTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 445 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 390 ILETYW 395
I+ETY+
Sbjct: 504 IIETYF 509
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 135 QPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 193
Q + Q + LP + + ++S+D E L+ LS I VI+AGV PRLVE
Sbjct: 79 QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138
Query: 194 LRHPSPSVL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACW 250
+R P +L + A + NI +G QT+ +++ A+P + LL Y S +K++A W
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIW 195
Query: 251 TISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310
+ N+ + + P++ L + + + + A W +SN G + +V
Sbjct: 196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 255
Query: 311 SQG 313
SQ
Sbjct: 256 SQA 258
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 59 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 118
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 119 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 357 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 390 ILETYW 395
I+ETY+
Sbjct: 416 IIETYF 421
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 117
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
+ P++ L + + + + A W +SN G +
Sbjct: 118 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ---------------- 161
Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA-------QAIDDAEGLEKIE 373
PD +V+ L L ++ + + E + ++ + QA+ D +++
Sbjct: 162 ----PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 374 NLQSHDNTEIYEKAVK 389
L SH++T + A++
Sbjct: 218 ELLSHESTLVQTPALR 233
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 59 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 118
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 119 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENI+K GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 357 IEVTLDALENIIKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 390 ILETYW 395
I+ETY+
Sbjct: 416 IIETYF 421
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 117
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
+ P++ L + + + + A W +SN G +
Sbjct: 118 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ---------------- 161
Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA-------QAIDDAEGLEKIE 373
PD +V+ L L ++ + + E + ++ + QA+ D +++
Sbjct: 162 ----PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 374 NLQSHDNTEIYEKAVK 389
L SH++T + A++
Sbjct: 218 ELLSHESTLVQTPALR 233
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 60 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 119
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 120 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 358 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 390 ILETYW 395
I+ETY+
Sbjct: 417 IIETYF 422
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 118
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313
+ P++ L + + + + A W +SN G + +VSQ
Sbjct: 119 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 171
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 390 ILETYW 395
I+ETY+
Sbjct: 418 IIETYF 423
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 119
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313
+ P++ L + + + + A W +SN G + +VSQ
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 172
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 390 ILETYW 395
I+ETY+
Sbjct: 418 IIETYF 423
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 119
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313
+ P++ L + + + + A W +SN G + +VSQ
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 172
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+Q EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 60 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 119
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP + ALP L +L
Sbjct: 120 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 358 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 390 ILETYW 395
I+ETY+
Sbjct: 417 IIETYF 422
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
LP + + ++S+D E L+ LS I VI+AGV PRLVE +R P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
+ A + NI +G QT+ +++ A+P + LL Y S +K++A W + N+ +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 118
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313
+ P++ L + + + + A W +SN G + +VSQ
Sbjct: 119 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 171
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 342 bits (877), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 311
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 372 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 425
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 426 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 52 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 111
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 112 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 154
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 103 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 162
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 222
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 282
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 283 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 341
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 342 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 401
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 402 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 455
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 456 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 82 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 141
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 142 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 184
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 420 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 338 bits (868), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 429
+ ++E Y+ T GF F +G P G FN
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/404 (46%), Positives = 254/404 (62%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AG
Sbjct: 136 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 255
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 374
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +K AAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 435 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 488
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T GF F +G P G FNF
Sbjct: 489 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 174
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 175 HAHISEQAVWALGNIAGAGSAFR-DLVIKHGAIDPLLALLAVPD 217
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 185/404 (45%), Positives = 251/404 (62%), Gaps = 16/404 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSV 127
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ GA+ PLLA S+ LRN TWTLSN CR K P P + LP
Sbjct: 128 FRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPT 187
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LL ++ PALR
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALR 247
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 306
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV++L A+F+ +KEA WA++N TSGG+ EQI +LV G I+PL +LL D
Sbjct: 307 NHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDT 366
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ+H+N +Y+ +
Sbjct: 367 KIILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKAS 420
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
+ ++E Y+ T G+ F +G P G FNF
Sbjct: 421 LSLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 47 IIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 106
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G + PL LL PD
Sbjct: 107 HAHISEQAVWALGNIAGDGSVFR-DLVIKYGAVDPLLALLAVPD 149
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 334 bits (857), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 420 LNLIEKYF 427
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 101 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 160
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 220
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 280
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 281 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 339
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 340 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 399
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 400 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 453
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 454 LNLIEKYF 461
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 80 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 139
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 140 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 182
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 66 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 304
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 364
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 365 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 418
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 419 LNLIEKYF 426
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 147
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 334 bits (856), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 420 LNLIEKYF 427
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 62 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 300
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 360
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 361 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 414
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 415 LNLIEKYF 422
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 143
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 62 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 300
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 360
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 361 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 414
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 415 LNLIEKYF 422
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 143
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 333 bits (855), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 66 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 304
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 364
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 365 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 418
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 419 LNLIEKYF 426
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 147
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
+QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 93 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 152
Query: 93 CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
RDLV+ +GA+ PLLA + + L+ LRN TWTLSN CR K P P + LP
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 212
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 272
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 273 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 331
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D
Sbjct: 332 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 391
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ +
Sbjct: 392 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 445
Query: 388 VKILETYW 395
+ ++E Y+
Sbjct: 446 LNLIEKYF 453
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
II +P + L + I+ E+ W ++NI +G ++LL +
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 131
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
I ++A WA+ N GS + ++ G I PL LL PD
Sbjct: 132 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 174
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 145 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
LV LL + +I +EA WA+SN SGG NEQI+ ++ G + L LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 383
P+ +I+ L L NI G +K QA+ +A LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 384 YEKAVKILE 392
++A + LE
Sbjct: 239 QKEAQEALE 247
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 11/220 (5%)
Query: 34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
Q A + I S +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 94 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPAL 148
V+ GAL P L Q +L+ A W LSN G EQ + ALPAL
Sbjct: 89 IQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPAL 143
Query: 149 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 208
+L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L AL
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203
Query: 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 248
+ NI +G + Q Q + AL L L + +K I+KEA
Sbjct: 204 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 232
Query: 324 CPDPRIVTVCLEGLENI 340
+ +I E LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 83
EA WAL+NIASG +E + V + GA+ +L S + ++++A AL
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILETY 394
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 10/166 (6%)
Query: 41 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100
L+ IASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A + V+
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALERLIHSN 155
GAL P L Q +L+ A W LSN G EQ + ALPAL +L+ S
Sbjct: 96 GAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSP 150
Query: 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 201
++++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 299
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
+P V+ L+SP + A+ L +A + V+ GAL P L Q +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 121 NATWTLSNFCRGKPQPLFEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTN 175
A W LSN G EQ + ALPAL +L+ S ++++L +A WALS ++ G N
Sbjct: 73 EALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 235
++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + AL L L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 236 LTQNYKKSIKKEACWTISNITA 257
+ +K I+KEA + + +
Sbjct: 189 QSHENEK-IQKEAQEALEKLQS 209
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 95
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 96 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIHS 154
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 155 NDDEVLTDACWALSYL 170
++++ +A AL L
Sbjct: 192 ENEKIQKEAQEALEKL 207
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 10/166 (6%)
Query: 41 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100
L+ IASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A + V+
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALERLIHSN 155
GAL P L Q +L+ A W LSN G EQ + ALPAL +L+ S
Sbjct: 96 GAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSP 150
Query: 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 201
++++L +A WALS ++ G N++ QAV EAG P L +L P+ +
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKI 196
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILE 392
+E LQS N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
+P V+ L+SP + A+ L +A + V+ GAL P L Q +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 121 NATWTLSNFCRGKPQPLFEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTN 175
A W LSN G EQ + ALPAL +L+ S ++++L +A WALS ++ G N
Sbjct: 73 EALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 235
++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + A P L L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 236 LTQNYKKSIKKEACWTISNITA 257
+ +K I+KEA + I +
Sbjct: 189 QSSPNEK-IQKEAQEALEKIQS 209
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 299
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 95
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 96 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIHS 154
V+ GAL P L Q +L+ A W LSN G Q + A PALE+L S
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSS 191
Query: 155 NDDEVLTDACWALSYL 170
++++ +A AL +
Sbjct: 192 PNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 145 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 324 CPDPRIVTVCLEGLENI 340
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 10/173 (5%)
Query: 34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
Q A + I S +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 94 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPAL 148
V+ GAL P L Q +L+ A W LSN G EQ + ALPAL
Sbjct: 89 IQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPAL 143
Query: 149 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 201
+L+ S ++++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
P++ + L + A R I++ + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILE 392
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 299
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 95
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 96 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIHS 154
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 133 AVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 155 NDDEVLTDACWALSYL 170
++++ +A AL L
Sbjct: 192 ENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 43/268 (16%)
Query: 34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
Q EAA L IASG + + ++D G V + V+LL+S +V+++A AL N+A +
Sbjct: 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 94 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 153
++ G + L+ +L+
Sbjct: 79 IKAIVDAGGVEVLV------------------------------------------KLLT 96
Query: 154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213
S D EV +A AL+ ++ G ++ I+A+++AG LV+LL V A R + NI
Sbjct: 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Query: 214 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 273
+G D + I++ + L+ LLT + ++KEA ++NI +G +
Sbjct: 157 SGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215
Query: 274 PLVNLLLNAEFEIKKEAAWAISNATSGG 301
L LL + + E++KEA A+ N SGG
Sbjct: 216 VLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L +L+ S D E +A L+ ++ G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV LL + + E++KEAA A++N S G +E IK +V G ++ L LL D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
+ L NI G T + +AI DA G+E ++ L + ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 388 VKILE 392
+ LE
Sbjct: 233 QRALE 237
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
L +L+ S D EV +A AL+ ++ G ++ I+A+++AG LV+LL V A R
Sbjct: 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 109 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 167
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
LV LL + + E++KEAA A++N SG ++ IK +V G ++ L LL D
Sbjct: 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDS 226
Query: 328 RIVTVCLEGLENILKAG 344
+ LENI G
Sbjct: 227 EVQKEAQRALENIKSGG 243
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 43/226 (19%)
Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
VQ EAA AL NIASG E + ++D G V + V+LL+S +V+++A AL N+A +
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
++ G + L+ +L+
Sbjct: 120 AIKAIVDAGGVEVLV------------------------------------------KLL 137
Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
S D EV +A AL+ ++ G ++ I+A+++AG LV+LL V A R + NI
Sbjct: 138 TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 258
+G + I++ + L LLT + ++KEA + NI +G
Sbjct: 198 ASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENIKSG 242
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 81 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
+AL +A +P ++ + M +L+ N KL+ L NF + F+
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 193
P LP + L+H D+ V A AL +L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 22/146 (15%)
Query: 34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
Q A TN+ T+ V+ D +P+ + LL P DVR A +A+ D+
Sbjct: 134 QITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193
Query: 94 RDLVLSNGALMPLLAQFNEHAKLSML-----RNATWTLSNFCRG-KPQPLFEQ------- 140
RD + L NE ++ + R LS C K +++
Sbjct: 194 RD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGE 247
Query: 141 --TRPALPALERLIHSNDD-EVLTDA 163
+ LP L+ ++ DD E++T A
Sbjct: 248 LGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 112
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 170
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 171 SDGTND 176
++ +
Sbjct: 478 AEAAYE 483
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 176
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 177 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEGM 261
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 112
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 238 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 293
Query: 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 170
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 294 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 171 SDG 173
++
Sbjct: 353 AEA 355
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 112
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 170
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 171 SDG 173
++
Sbjct: 478 AEA 480
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 112
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 170
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 171 SDG 173
++
Sbjct: 478 AEA 480
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 37 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 97 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLF 138
G + L +H K++ N +WT+ N P P++
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEATPSPIY 493
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 37 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 97 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLF 138
G + L +H K++ N +WT+ N P P++
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEATPSPIY 493
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 182
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 183 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 239
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 240 TDPSQRLVQNCLWTLRNLSDAATKQEGM 267
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 183
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 184 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 240
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 241 TDPSQRLVQNCLWTLRNLSDAATKQEGM 268
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 177
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 178 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 234
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 235 TDPSQRLVQNCLWTLRNLSDAATKQEGM 262
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 168
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 169 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 225
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 226 TDPSQRLVQNCLWTLRNLSDAATKQEGM 253
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 238
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 239 TDPSQRLVQNCLWTLRNLSDAATKQEGM 266
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 177
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 178 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 234
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 235 TDPSQRLVQNCLWTLRNLSDAATKQEGM 262
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 238
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 239 TDPSQRLVQNCLWTLRNLSDAATKQEGM 266
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 221
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 222 TDPSQRLVQNCLWTLRNLSDAATKQEGM 249
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 221
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 222 TDPSQRLVQNCLWTLRNLSDAATKQEGM 249
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 180
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 181 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 237
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 238 TDPSQRLVQNCLWTLRNLSDAATKQEGM 265
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 166
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 167 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 223
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 224 TDPSQRLVQNCLWTLRNLSDAATKQEGM 251
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 179
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 180 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGM 264
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 155 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
N ++V T C + LS+ +G + A+ ++G P LV +L P SVL A+ T+
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREG----LLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258
Query: 210 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 264
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 259 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 312
Query: 265 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 322
LVN++ +E + W S S + +V G ++ L L
Sbjct: 313 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369
Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNM 350
P R+V CL L N+ A ++ M
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGM 397
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 161
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVKYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 162 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 195
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 196 HPSPSVLIP 204
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 161
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 162 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 195
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 196 HPSPSVLIP 204
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 161
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 155 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 206
Query: 162 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 195
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 207 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 266
Query: 196 HPSPSVLIP 204
H +P
Sbjct: 267 HRGIDAGLP 275
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 161
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVCYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 162 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 195
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 196 HPSPSVLIP 204
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239
A+ ++G P LV +L P SVL A+ T+ N++ + + L ++ LL +N
Sbjct: 98 AIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKN 157
Query: 240 YKKSIK-KEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNAT 298
K + C + + GN LV ++ N +E + W S
Sbjct: 158 NPKFLAITTDCLQL--LAYGNQESKLIILANGGPQALVQIMRNYSYE---KLLWTTSRVL 212
Query: 299 SGGS--NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-------------EGLENILK 342
S +V G ++ L L PR+V CL EGLE++LK
Sbjct: 213 KVLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLK 271
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 34/270 (12%)
Query: 46 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNG--A 102
S E + G +P VR+LSSP + V A+ L N+ + V L++G
Sbjct: 90 SHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQK 149
Query: 103 LMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 154
++PLL + N +L N L G PQ L + R +
Sbjct: 150 MVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMR----------NY 199
Query: 155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214
+ +++L L LS ++K A++EAG L + L SP ++ L T+ N+
Sbjct: 200 SYEKLLWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL-- 256
Query: 215 GDDMQTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNXXXXXXXXXX 271
D+ T+ + L +L +L ++ A T+SN+T N
Sbjct: 257 -SDVATK----QEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSG 311
Query: 272 XXPLVNLLLNA--EFEIKKEAAWAISNATS 299
L++ +L A + +I + A A+ + TS
Sbjct: 312 VEALIHAILRAGDKDDITEPAVCALRHLTS 341
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 37 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96
A A +I G N + A+P + L+ P+ VR+ W +G + P+
Sbjct: 386 AVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEA--- 442
Query: 97 VLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRG 132
+++ L PLL E A+ + N W S+
Sbjct: 443 AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396
K G + MG G +LFAQ D G +++ L D+ +I E L YW+
Sbjct: 195 KGGTGDCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDH-QITEVGTMNLFLYWI 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,684,433
Number of Sequences: 62578
Number of extensions: 446039
Number of successful extensions: 2063
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 172
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)