Query 014088
Match_columns 431
No_of_seqs 307 out of 2259
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 01:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 2E-61 4.4E-66 440.4 42.4 410 5-430 103-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-57 2.9E-62 385.7 31.0 416 4-429 107-526 (526)
3 KOG0166 Karyopherin (importin) 100.0 1.6E-38 3.4E-43 290.7 25.9 331 6-344 147-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 4.7E-38 1E-42 267.1 20.4 329 7-343 153-497 (526)
5 PLN03200 cellulose synthase-in 100.0 1.1E-34 2.4E-39 302.7 40.7 378 6-397 441-861 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.4E-34 2.9E-39 302.1 39.4 365 9-402 402-770 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2E-31 4.3E-36 228.7 16.2 356 24-400 92-450 (550)
8 KOG4224 Armadillo repeat prote 100.0 7.3E-29 1.6E-33 213.0 23.0 350 28-396 137-493 (550)
9 PF05804 KAP: Kinesin-associat 99.9 8.3E-24 1.8E-28 205.1 36.6 354 9-393 288-646 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.9E-20 6.4E-25 180.6 33.2 324 5-347 325-654 (708)
11 KOG1048 Neural adherens juncti 99.9 1.1E-19 2.3E-24 172.6 27.2 360 21-397 238-685 (717)
12 PF10508 Proteasom_PSMB: Prote 99.8 3.7E-16 8.1E-21 150.5 32.4 369 15-396 37-420 (503)
13 PF10508 Proteasom_PSMB: Prote 99.8 2.2E-15 4.8E-20 145.2 35.4 357 20-395 81-461 (503)
14 KOG4500 Rho/Rac GTPase guanine 99.8 2.6E-16 5.6E-21 139.0 22.5 340 25-381 95-459 (604)
15 KOG0168 Putative ubiquitin fus 99.7 1.3E-15 2.9E-20 144.7 25.4 349 16-380 211-656 (1051)
16 KOG2023 Nuclear transport rece 99.7 1.7E-15 3.6E-20 140.6 21.4 372 21-415 133-636 (885)
17 KOG4199 Uncharacterized conser 99.7 3.8E-14 8.2E-19 121.7 26.7 321 9-340 102-442 (461)
18 KOG2122 Beta-catenin-binding p 99.7 2.5E-15 5.4E-20 149.6 22.2 334 3-344 228-603 (2195)
19 KOG4199 Uncharacterized conser 99.7 1.3E-14 2.9E-19 124.5 23.5 276 23-300 152-445 (461)
20 KOG1048 Neural adherens juncti 99.7 3.1E-15 6.7E-20 142.6 21.1 327 8-346 272-688 (717)
21 KOG1222 Kinesin associated pro 99.7 2.7E-13 5.8E-18 121.9 28.8 360 6-392 294-659 (791)
22 KOG2122 Beta-catenin-binding p 99.7 5.7E-15 1.2E-19 147.1 19.4 371 34-426 211-622 (2195)
23 PRK09687 putative lyase; Provi 99.7 1.9E-14 4.1E-19 127.5 20.8 251 21-339 28-279 (280)
24 PRK09687 putative lyase; Provi 99.7 4.2E-14 9.2E-19 125.3 22.5 255 59-393 23-279 (280)
25 KOG2171 Karyopherin (importin) 99.6 5.1E-13 1.1E-17 132.2 30.8 319 20-346 122-508 (1075)
26 PF04826 Arm_2: Armadillo-like 99.6 8.5E-14 1.9E-18 120.5 22.1 239 140-387 9-253 (254)
27 PF04826 Arm_2: Armadillo-like 99.6 1.9E-13 4.2E-18 118.3 21.1 196 8-215 9-206 (254)
28 PRK13800 putative oxidoreducta 99.6 7.3E-13 1.6E-17 136.9 28.1 269 23-393 628-896 (897)
29 KOG1222 Kinesin associated pro 99.6 6.1E-12 1.3E-16 113.3 27.2 320 9-347 343-668 (791)
30 KOG2171 Karyopherin (importin) 99.5 1.7E-11 3.7E-16 121.6 30.4 318 19-345 162-552 (1075)
31 cd00256 VATPase_H VATPase_H, r 99.5 2.8E-11 6E-16 111.7 29.3 322 59-395 53-424 (429)
32 KOG1293 Proteins containing ar 99.5 7E-12 1.5E-16 117.1 24.7 372 7-398 47-535 (678)
33 KOG2023 Nuclear transport rece 99.5 5.4E-13 1.2E-17 124.2 16.8 311 59-394 128-503 (885)
34 KOG4500 Rho/Rac GTPase guanine 99.5 1E-11 2.2E-16 110.4 22.8 371 6-391 124-514 (604)
35 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.9E-17 101.6 13.9 118 7-131 3-120 (120)
36 cd00020 ARM Armadillo/beta-cat 99.5 2.4E-12 5.2E-17 100.2 13.7 118 181-299 3-120 (120)
37 PF01602 Adaptin_N: Adaptin N 99.4 1.7E-10 3.7E-15 114.0 28.8 318 21-393 47-366 (526)
38 PRK13800 putative oxidoreducta 99.4 8E-11 1.7E-15 121.9 25.3 246 58-394 620-865 (897)
39 PF01602 Adaptin_N: Adaptin N 99.4 7.7E-11 1.7E-15 116.4 22.1 325 21-397 9-334 (526)
40 KOG1293 Proteins containing ar 99.4 8E-11 1.7E-15 110.2 20.0 327 17-346 96-537 (678)
41 KOG0168 Putative ubiquitin fus 99.4 3.4E-10 7.4E-15 108.6 24.0 257 21-281 172-437 (1051)
42 cd00256 VATPase_H VATPase_H, r 99.3 1.2E-09 2.5E-14 101.1 25.4 321 20-343 57-426 (429)
43 KOG0946 ER-Golgi vesicle-tethe 99.3 1.5E-08 3.2E-13 97.0 30.5 325 12-347 23-404 (970)
44 PTZ00429 beta-adaptin; Provisi 99.3 6.2E-09 1.3E-13 103.6 29.1 250 25-299 76-326 (746)
45 PTZ00429 beta-adaptin; Provisi 99.3 1.6E-08 3.5E-13 100.7 31.0 214 28-261 116-330 (746)
46 KOG2759 Vacuolar H+-ATPase V1 99.3 3E-08 6.5E-13 88.7 28.5 349 32-396 34-438 (442)
47 KOG1241 Karyopherin (importin) 99.2 6.9E-09 1.5E-13 98.9 24.9 328 2-343 356-712 (859)
48 KOG2160 Armadillo/beta-catenin 99.2 3.5E-09 7.5E-14 93.4 21.4 187 27-214 93-282 (342)
49 KOG1241 Karyopherin (importin) 99.2 4.9E-09 1.1E-13 99.9 23.5 313 29-349 142-484 (859)
50 KOG2160 Armadillo/beta-catenin 99.2 6.1E-09 1.3E-13 91.8 21.5 189 155-345 95-285 (342)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 1.2E-08 2.6E-13 97.6 21.7 288 102-400 23-350 (970)
52 PF03224 V-ATPase_H_N: V-ATPas 99.1 6E-09 1.3E-13 95.0 17.5 227 103-332 57-304 (312)
53 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.7E-09 1.2E-13 95.1 16.1 227 60-289 56-304 (312)
54 KOG2759 Vacuolar H+-ATPase V1 99.1 1.6E-08 3.4E-13 90.5 17.9 275 21-300 119-439 (442)
55 KOG1242 Protein containing ada 99.0 1.2E-06 2.7E-11 82.5 28.5 334 27-395 106-443 (569)
56 KOG1517 Guanine nucleotide bin 99.0 3.7E-08 7.9E-13 97.0 16.9 250 14-267 470-742 (1387)
57 KOG1059 Vesicle coat complex A 98.9 2E-06 4.4E-11 82.0 25.6 190 8-214 141-365 (877)
58 KOG3678 SARM protein (with ste 98.9 1E-06 2.2E-11 80.0 21.4 273 94-393 173-449 (832)
59 KOG1061 Vesicle coat complex A 98.9 4.8E-07 1E-11 87.2 20.3 294 28-347 97-420 (734)
60 KOG1824 TATA-binding protein-i 98.8 2.5E-07 5.5E-12 90.4 18.5 272 63-347 9-291 (1233)
61 KOG1789 Endocytosis protein RM 98.8 7.7E-06 1.7E-10 81.2 28.4 297 22-324 1777-2141(2235)
62 COG5369 Uncharacterized conser 98.8 3.1E-08 6.6E-13 91.0 10.5 305 79-394 409-739 (743)
63 KOG1062 Vesicle coat complex A 98.8 4.8E-06 1E-10 80.5 24.5 287 28-342 118-451 (866)
64 KOG0213 Splicing factor 3b, su 98.8 8.9E-07 1.9E-11 84.6 19.3 320 60-400 800-1146(1172)
65 KOG3678 SARM protein (with ste 98.8 5.6E-07 1.2E-11 81.7 16.9 271 3-297 173-450 (832)
66 KOG0212 Uncharacterized conser 98.8 2.2E-07 4.8E-12 86.0 14.7 309 24-346 92-410 (675)
67 KOG1059 Vesicle coat complex A 98.8 8.9E-06 1.9E-10 77.8 25.3 223 60-303 145-405 (877)
68 KOG0213 Splicing factor 3b, su 98.7 1.4E-06 3E-11 83.4 19.4 256 26-301 808-1067(1172)
69 COG5215 KAP95 Karyopherin (imp 98.7 2.7E-06 5.9E-11 79.1 20.8 311 25-343 374-712 (858)
70 COG5369 Uncharacterized conser 98.7 1.3E-07 2.8E-12 87.0 11.9 264 33-297 405-739 (743)
71 KOG2973 Uncharacterized conser 98.7 1.3E-05 2.8E-10 69.3 22.7 272 104-396 6-315 (353)
72 KOG1824 TATA-binding protein-i 98.7 1E-05 2.2E-10 79.6 24.6 362 21-395 136-598 (1233)
73 KOG2973 Uncharacterized conser 98.7 8.5E-06 1.8E-10 70.4 20.2 264 25-299 11-315 (353)
74 COG5181 HSH155 U2 snRNP splice 98.6 2.7E-06 5.8E-11 79.8 17.9 330 25-396 612-947 (975)
75 TIGR02270 conserved hypothetic 98.6 3.5E-05 7.5E-10 72.1 24.7 242 59-396 54-296 (410)
76 COG5181 HSH155 U2 snRNP splice 98.6 2.1E-06 4.5E-11 80.6 15.8 265 60-345 605-873 (975)
77 COG5215 KAP95 Karyopherin (imp 98.6 2.4E-05 5.2E-10 73.1 22.3 351 21-396 44-437 (858)
78 KOG1058 Vesicle coat complex C 98.6 9.7E-06 2.1E-10 77.9 19.7 310 28-400 110-467 (948)
79 COG5231 VMA13 Vacuolar H+-ATPa 98.6 1.1E-05 2.5E-10 69.8 18.1 269 117-398 123-430 (432)
80 KOG1242 Protein containing ada 98.5 7.7E-05 1.7E-09 70.8 24.4 289 19-324 137-464 (569)
81 PF14664 RICTOR_N: Rapamycin-i 98.5 7.3E-05 1.6E-09 69.2 23.8 336 42-395 8-363 (371)
82 TIGR02270 conserved hypothetic 98.5 7.2E-05 1.6E-09 70.0 23.2 240 20-343 58-297 (410)
83 KOG1517 Guanine nucleotide bin 98.5 8.4E-06 1.8E-10 81.0 17.5 225 120-344 488-734 (1387)
84 KOG1062 Vesicle coat complex A 98.5 6.6E-05 1.4E-09 73.0 22.7 219 112-344 117-381 (866)
85 KOG4413 26S proteasome regulat 98.4 6E-05 1.3E-09 65.8 19.6 266 122-400 63-337 (524)
86 KOG4646 Uncharacterized conser 98.4 7.4E-06 1.6E-10 61.7 11.8 154 228-396 17-170 (173)
87 KOG1240 Protein kinase contain 98.4 2.7E-05 5.9E-10 78.7 19.2 267 103-394 424-723 (1431)
88 KOG2259 Uncharacterized conser 98.4 2.9E-05 6.3E-10 73.7 18.3 251 106-393 203-472 (823)
89 KOG1240 Protein kinase contain 98.4 7.7E-06 1.7E-10 82.4 15.1 300 20-346 426-729 (1431)
90 KOG1061 Vesicle coat complex A 98.4 1.4E-05 3E-10 77.4 16.0 308 11-347 49-384 (734)
91 KOG2259 Uncharacterized conser 98.4 5.5E-06 1.2E-10 78.4 12.6 246 64-332 203-465 (823)
92 KOG0915 Uncharacterized conser 98.4 0.00028 6.1E-09 73.3 25.0 313 12-343 999-1345(1702)
93 KOG4413 26S proteasome regulat 98.3 0.00082 1.8E-08 58.9 23.9 277 59-341 82-376 (524)
94 KOG1060 Vesicle coat complex A 98.3 0.00035 7.6E-09 67.9 23.8 283 21-343 40-351 (968)
95 PF05536 Neurochondrin: Neuroc 98.3 0.00013 2.8E-09 71.3 21.3 237 60-299 6-261 (543)
96 PF00514 Arm: Armadillo/beta-c 98.3 1.2E-06 2.7E-11 53.0 4.8 41 48-88 1-41 (41)
97 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00011 2.5E-09 67.9 19.8 239 142-400 24-273 (371)
98 KOG1060 Vesicle coat complex A 98.3 0.00044 9.5E-09 67.3 23.8 259 25-308 151-467 (968)
99 KOG1789 Endocytosis protein RM 98.3 0.00082 1.8E-08 67.5 25.9 328 32-377 1740-2140(2235)
100 COG5231 VMA13 Vacuolar H+-ATPa 98.3 6.1E-05 1.3E-09 65.4 15.7 225 30-257 162-428 (432)
101 KOG0915 Uncharacterized conser 98.3 0.00011 2.3E-09 76.3 19.8 353 15-387 817-1236(1702)
102 KOG0212 Uncharacterized conser 98.3 3.7E-05 8.1E-10 71.7 14.7 322 58-400 83-410 (675)
103 PF00514 Arm: Armadillo/beta-c 98.2 3.5E-06 7.5E-11 51.0 4.9 41 259-299 1-41 (41)
104 PF12348 CLASP_N: CLASP N term 98.2 2.2E-05 4.9E-10 68.3 11.9 186 195-396 17-206 (228)
105 COG1413 FOG: HEAT repeat [Ener 98.2 0.0006 1.3E-08 63.2 21.8 209 22-295 49-269 (335)
106 KOG4646 Uncharacterized conser 98.2 1.9E-05 4E-10 59.6 9.0 133 102-235 17-149 (173)
107 PF05536 Neurochondrin: Neuroc 98.2 0.00026 5.6E-09 69.2 19.5 242 143-397 5-262 (543)
108 KOG0211 Protein phosphatase 2A 98.1 0.00024 5.3E-09 70.9 19.0 335 31-397 290-626 (759)
109 COG5240 SEC21 Vesicle coat com 98.1 0.00012 2.5E-09 68.7 15.2 276 31-341 278-554 (898)
110 COG1413 FOG: HEAT repeat [Ener 98.1 0.0009 2E-08 62.0 21.6 187 59-299 43-242 (335)
111 PF10165 Ric8: Guanine nucleot 98.1 0.00059 1.3E-08 65.2 20.6 297 123-426 2-366 (446)
112 KOG1077 Vesicle coat complex A 98.1 0.0011 2.5E-08 63.8 21.8 281 28-334 122-425 (938)
113 COG5240 SEC21 Vesicle coat com 98.1 0.00076 1.6E-08 63.5 20.0 259 105-395 268-554 (898)
114 KOG0211 Protein phosphatase 2A 98.1 0.00025 5.4E-09 70.8 18.1 305 60-393 356-661 (759)
115 PF12348 CLASP_N: CLASP N term 98.1 2.1E-05 4.5E-10 68.6 9.1 188 69-263 17-212 (228)
116 PF10165 Ric8: Guanine nucleot 98.0 0.0018 4E-08 61.9 22.3 234 27-261 42-341 (446)
117 PF13513 HEAT_EZ: HEAT-like re 98.0 1.5E-05 3.2E-10 51.9 5.7 55 242-297 1-55 (55)
118 PF13646 HEAT_2: HEAT repeats; 98.0 1.6E-05 3.4E-10 57.7 6.4 86 20-127 3-88 (88)
119 KOG2062 26S proteasome regulat 98.0 0.00045 9.8E-09 66.7 17.5 239 20-302 417-656 (929)
120 KOG1991 Nuclear transport rece 98.0 0.0062 1.3E-07 61.2 25.6 312 29-346 430-761 (1010)
121 KOG1077 Vesicle coat complex A 98.0 0.0054 1.2E-07 59.3 23.9 263 103-398 113-400 (938)
122 COG5096 Vesicle coat complex, 98.0 0.004 8.7E-08 61.9 23.7 166 28-215 30-196 (757)
123 KOG1943 Beta-tubulin folding c 98.0 0.011 2.3E-07 60.1 26.2 263 13-299 335-611 (1133)
124 PF12460 MMS19_C: RNAPII trans 98.0 0.0035 7.7E-08 59.7 22.6 189 102-301 190-396 (415)
125 KOG1991 Nuclear transport rece 97.9 0.013 2.9E-07 58.9 26.4 75 15-92 461-536 (1010)
126 PF13646 HEAT_2: HEAT repeats; 97.9 4.8E-05 1E-09 55.1 7.5 87 103-210 1-88 (88)
127 KOG4535 HEAT and armadillo rep 97.9 0.00025 5.4E-09 65.2 13.3 270 112-394 305-601 (728)
128 COG5096 Vesicle coat complex, 97.9 0.0019 4E-08 64.2 19.5 165 113-299 30-195 (757)
129 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00015 3.2E-09 53.0 8.5 94 245-342 3-96 (97)
130 KOG2734 Uncharacterized conser 97.8 0.0099 2.1E-07 54.5 20.7 225 138-375 120-369 (536)
131 PF13513 HEAT_EZ: HEAT-like re 97.8 2.6E-05 5.7E-10 50.7 3.4 55 116-170 1-55 (55)
132 KOG2734 Uncharacterized conser 97.7 0.034 7.3E-07 51.1 25.2 262 79-344 104-402 (536)
133 KOG2274 Predicted importin 9 [ 97.7 0.0084 1.8E-07 59.7 20.9 281 22-308 496-789 (1005)
134 KOG2274 Predicted importin 9 [ 97.7 0.038 8.2E-07 55.3 25.3 227 70-304 461-694 (1005)
135 PF09759 Atx10homo_assoc: Spin 97.7 0.00031 6.7E-09 51.3 8.2 67 33-99 2-70 (102)
136 PF12460 MMS19_C: RNAPII trans 97.7 0.051 1.1E-06 51.9 27.7 297 30-345 56-397 (415)
137 PF08569 Mo25: Mo25-like; Int 97.6 0.022 4.7E-07 52.0 21.0 204 142-349 75-290 (335)
138 smart00185 ARM Armadillo/beta- 97.6 0.00018 3.8E-09 43.4 5.2 40 49-88 2-41 (41)
139 KOG1248 Uncharacterized conser 97.6 0.0056 1.2E-07 62.7 18.3 231 112-347 664-903 (1176)
140 KOG4535 HEAT and armadillo rep 97.6 0.00045 9.7E-09 63.6 9.6 300 32-339 270-600 (728)
141 PF12717 Cnd1: non-SMC mitotic 97.6 0.003 6.4E-08 52.5 13.9 93 72-173 1-93 (178)
142 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.0018 3.8E-08 47.4 10.8 93 287-395 3-95 (97)
143 PF12717 Cnd1: non-SMC mitotic 97.6 0.006 1.3E-07 50.6 15.3 93 115-215 1-93 (178)
144 PF08569 Mo25: Mo25-like; Int 97.5 0.022 4.8E-07 52.0 19.3 204 179-393 70-280 (335)
145 PF11841 DUF3361: Domain of un 97.5 0.0048 1E-07 49.0 13.0 130 179-309 5-141 (160)
146 KOG4151 Myosin assembly protei 97.5 0.002 4.2E-08 63.3 12.9 224 93-323 496-722 (748)
147 KOG1248 Uncharacterized conser 97.5 0.0081 1.8E-07 61.6 17.2 243 21-268 658-910 (1176)
148 KOG1058 Vesicle coat complex C 97.5 0.011 2.4E-07 57.7 17.2 219 61-301 245-465 (948)
149 KOG1078 Vesicle coat complex C 97.4 0.0059 1.3E-07 59.8 15.3 139 186-341 392-531 (865)
150 KOG0567 HEAT repeat-containing 97.4 0.014 3.1E-07 49.9 15.5 243 31-340 19-278 (289)
151 smart00185 ARM Armadillo/beta- 97.4 0.00055 1.2E-08 41.1 5.4 39 260-298 2-40 (41)
152 COG5116 RPN2 26S proteasome re 97.4 0.01 2.2E-07 56.1 15.8 136 146-304 519-655 (926)
153 PF09759 Atx10homo_assoc: Spin 97.4 0.0015 3.2E-08 47.8 8.2 68 201-268 2-70 (102)
154 PF04078 Rcd1: Cell differenti 97.4 0.025 5.5E-07 48.7 16.8 188 156-346 8-222 (262)
155 KOG0567 HEAT repeat-containing 97.4 0.048 1E-06 46.8 18.1 224 103-394 38-278 (289)
156 PF11841 DUF3361: Domain of un 97.4 0.0098 2.1E-07 47.3 13.2 126 94-219 4-136 (160)
157 KOG4653 Uncharacterized conser 97.4 0.015 3.1E-07 57.8 17.0 216 112-339 737-961 (982)
158 KOG0414 Chromosome condensatio 97.4 0.0074 1.6E-07 61.8 15.3 162 124-301 899-1066(1251)
159 KOG1078 Vesicle coat complex C 97.3 0.074 1.6E-06 52.5 21.2 141 227-395 391-531 (865)
160 PF05918 API5: Apoptosis inhib 97.3 0.065 1.4E-06 51.9 20.8 288 29-346 34-349 (556)
161 PF05004 IFRD: Interferon-rela 97.3 0.065 1.4E-06 48.7 19.2 197 145-346 45-261 (309)
162 KOG2032 Uncharacterized conser 97.2 0.078 1.7E-06 49.6 19.4 268 58-342 253-531 (533)
163 KOG1943 Beta-tubulin folding c 97.2 0.083 1.8E-06 54.1 21.1 253 59-335 341-604 (1133)
164 KOG2025 Chromosome condensatio 97.2 0.05 1.1E-06 53.1 18.8 108 140-253 82-189 (892)
165 KOG2956 CLIP-associating prote 97.2 0.02 4.3E-07 53.1 15.3 147 102-257 330-477 (516)
166 PF12719 Cnd3: Nuclear condens 97.2 0.031 6.7E-07 50.7 16.9 172 142-325 25-209 (298)
167 KOG1967 DNA repair/transcripti 97.2 0.003 6.5E-08 62.9 10.3 187 60-252 816-1019(1030)
168 KOG2032 Uncharacterized conser 97.1 0.15 3.2E-06 47.8 19.8 153 143-299 258-415 (533)
169 KOG2062 26S proteasome regulat 97.1 0.1 2.2E-06 51.3 19.3 133 188-344 522-655 (929)
170 KOG3036 Protein involved in ce 97.1 0.043 9.4E-07 46.5 14.7 140 247-396 98-247 (293)
171 PF05004 IFRD: Interferon-rela 97.1 0.047 1E-06 49.6 16.4 192 105-299 47-257 (309)
172 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.0027 5.8E-08 47.7 6.8 70 314-395 44-114 (119)
173 PF12719 Cnd3: Nuclear condens 97.0 0.13 2.9E-06 46.6 18.5 172 15-197 26-209 (298)
174 KOG1020 Sister chromatid cohes 96.9 0.76 1.6E-05 49.2 29.2 134 27-171 826-959 (1692)
175 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0019 4.1E-08 48.5 5.1 73 227-299 43-115 (119)
176 KOG4653 Uncharacterized conser 96.9 0.03 6.5E-07 55.7 14.4 216 27-253 737-960 (982)
177 KOG2025 Chromosome condensatio 96.9 0.21 4.5E-06 49.0 19.6 129 73-210 60-189 (892)
178 KOG4151 Myosin assembly protei 96.9 0.08 1.7E-06 52.4 16.9 218 140-377 501-722 (748)
179 KOG3036 Protein involved in ce 96.9 0.029 6.2E-07 47.5 12.0 123 11-133 119-249 (293)
180 KOG1949 Uncharacterized conser 96.8 0.27 5.8E-06 48.2 19.4 195 12-213 170-369 (1005)
181 PF04078 Rcd1: Cell differenti 96.8 0.068 1.5E-06 46.1 13.8 144 248-397 70-219 (262)
182 KOG1243 Protein kinase [Genera 96.8 0.052 1.1E-06 53.0 14.5 229 139-401 289-520 (690)
183 KOG0414 Chromosome condensatio 96.7 0.016 3.5E-07 59.5 11.1 160 60-239 920-1083(1251)
184 PRK14707 hypothetical protein; 96.7 1.2 2.6E-05 49.4 24.6 345 29-395 177-529 (2710)
185 KOG1020 Sister chromatid cohes 96.6 0.063 1.4E-06 56.8 14.7 168 120-301 795-962 (1692)
186 KOG1967 DNA repair/transcripti 96.6 0.018 3.9E-07 57.6 10.2 153 58-212 866-1022(1030)
187 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.91 2E-05 46.5 22.2 237 143-398 117-408 (802)
188 KOG1820 Microtubule-associated 96.5 0.064 1.4E-06 54.6 14.0 199 60-267 254-454 (815)
189 COG5656 SXM1 Importin, protein 96.5 0.46 1E-05 47.0 18.7 279 11-301 408-713 (970)
190 PF11701 UNC45-central: Myosin 96.5 0.026 5.7E-07 45.6 9.2 144 188-339 6-156 (157)
191 PF08045 CDC14: Cell division 96.4 0.049 1.1E-06 47.3 10.9 101 32-132 106-208 (257)
192 PF07814 WAPL: Wings apart-lik 96.4 0.3 6.6E-06 45.5 17.0 269 24-301 29-357 (361)
193 KOG2956 CLIP-associating prote 96.4 0.36 7.7E-06 45.1 16.6 174 115-299 300-477 (516)
194 PF11701 UNC45-central: Myosin 96.3 0.06 1.3E-06 43.5 10.2 143 147-296 7-156 (157)
195 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.6 3.6E-05 44.8 25.0 210 57-281 115-361 (802)
196 KOG1566 Conserved protein Mo25 96.3 0.75 1.6E-05 40.8 17.5 204 95-302 73-289 (342)
197 PF02985 HEAT: HEAT repeat; I 96.3 0.0085 1.8E-07 33.4 3.7 30 144-173 1-30 (31)
198 PF06025 DUF913: Domain of Unk 96.2 0.62 1.4E-05 43.6 17.9 122 203-326 78-209 (379)
199 PF05918 API5: Apoptosis inhib 96.2 0.025 5.3E-07 54.7 8.7 132 146-297 26-160 (556)
200 KOG3665 ZYG-1-like serine/thre 96.1 0.96 2.1E-05 46.0 20.0 176 208-395 494-696 (699)
201 PF14500 MMS19_N: Dos2-interac 96.1 0.9 1.9E-05 40.2 18.2 224 62-302 2-240 (262)
202 PF08045 CDC14: Cell division 96.1 0.22 4.8E-06 43.3 13.1 106 285-403 106-214 (257)
203 KOG1820 Microtubule-associated 96.1 0.21 4.6E-06 51.0 14.9 188 112-308 263-452 (815)
204 KOG1993 Nuclear transport rece 96.0 1.8 3.8E-05 43.5 20.1 271 22-302 532-815 (978)
205 PF14668 RICTOR_V: Rapamycin-i 96.0 0.053 1.1E-06 37.0 7.2 66 245-313 4-70 (73)
206 PF02985 HEAT: HEAT repeat; I 96.0 0.0077 1.7E-07 33.5 2.7 29 60-88 1-29 (31)
207 COG5218 YCG1 Chromosome conden 96.0 0.81 1.8E-05 44.1 17.1 109 138-252 86-194 (885)
208 KOG1243 Protein kinase [Genera 95.8 0.34 7.5E-06 47.6 14.4 193 140-347 327-520 (690)
209 COG5116 RPN2 26S proteasome re 95.7 0.085 1.8E-06 50.2 9.7 152 23-197 522-674 (926)
210 KOG3665 ZYG-1-like serine/thre 95.7 0.31 6.8E-06 49.5 14.4 196 82-295 494-693 (699)
211 PF11707 Npa1: Ribosome 60S bi 95.7 1.7 3.7E-05 40.0 20.7 159 229-396 58-237 (330)
212 PF13251 DUF4042: Domain of un 95.7 0.42 9E-06 39.5 12.5 142 33-174 2-176 (182)
213 KOG2137 Protein kinase [Signal 95.7 1.6 3.5E-05 43.2 18.3 235 72-326 286-521 (700)
214 COG5098 Chromosome condensatio 95.7 0.053 1.2E-06 52.8 8.2 134 197-346 908-1041(1128)
215 PLN03076 ARF guanine nucleotid 95.6 0.98 2.1E-05 50.5 18.6 263 71-345 1149-1492(1780)
216 PF14500 MMS19_N: Dos2-interac 95.6 1.5 3.2E-05 38.8 17.0 215 24-257 7-237 (262)
217 PF12530 DUF3730: Protein of u 95.5 1.5 3.3E-05 38.1 17.1 203 61-284 2-217 (234)
218 PF07814 WAPL: Wings apart-lik 95.5 1.2 2.7E-05 41.5 16.5 275 60-345 22-358 (361)
219 cd03568 VHS_STAM VHS domain fa 95.5 0.029 6.3E-07 44.4 4.9 75 314-399 38-113 (144)
220 PF06025 DUF913: Domain of Unk 95.4 1.9 4.2E-05 40.4 17.4 194 78-283 3-209 (379)
221 KOG2137 Protein kinase [Signal 95.3 0.68 1.5E-05 45.8 14.5 154 138-300 384-540 (700)
222 KOG1566 Conserved protein Mo25 95.3 2 4.4E-05 38.2 17.6 212 179-404 73-294 (342)
223 COG5656 SXM1 Importin, protein 95.3 3.7 7.9E-05 41.1 21.5 280 58-346 407-715 (970)
224 PF03378 CAS_CSE1: CAS/CSE pro 95.2 2.6 5.7E-05 40.3 18.0 265 71-344 42-326 (435)
225 PF11864 DUF3384: Domain of un 95.2 3.3 7.2E-05 40.2 23.0 143 103-256 178-329 (464)
226 KOG2999 Regulator of Rac1, req 95.1 1 2.3E-05 43.0 14.5 166 143-310 83-253 (713)
227 PF11864 DUF3384: Domain of un 95.1 3.6 7.8E-05 40.0 24.8 251 28-299 40-330 (464)
228 PF11865 DUF3385: Domain of un 94.9 0.34 7.3E-06 39.3 9.8 143 20-171 14-156 (160)
229 PF12530 DUF3730: Protein of u 94.7 2.6 5.7E-05 36.7 17.8 140 146-301 3-153 (234)
230 PRK14707 hypothetical protein; 94.7 9.6 0.00021 43.1 26.8 349 25-391 256-608 (2710)
231 KOG2933 Uncharacterized conser 94.5 0.21 4.6E-06 44.0 8.0 141 103-257 90-234 (334)
232 PF11707 Npa1: Ribosome 60S bi 94.5 3.9 8.5E-05 37.7 22.3 164 181-345 53-240 (330)
233 PF04063 DUF383: Domain of unk 94.5 0.28 6.1E-06 40.9 8.4 125 70-195 6-157 (192)
234 COG5218 YCG1 Chromosome conden 94.5 0.53 1.1E-05 45.3 10.9 104 181-294 88-194 (885)
235 PF14668 RICTOR_V: Rapamycin-i 94.4 0.31 6.7E-06 33.3 7.0 67 202-270 4-70 (73)
236 PF06371 Drf_GBD: Diaphanous G 94.4 0.42 9.1E-06 39.9 9.6 82 48-130 96-186 (187)
237 KOG0891 DNA-dependent protein 94.3 0.57 1.2E-05 53.4 12.7 282 8-300 473-764 (2341)
238 PF11865 DUF3385: Domain of un 94.3 0.47 1E-05 38.5 9.3 38 227-264 10-47 (160)
239 KOG1949 Uncharacterized conser 94.2 2.3 4.9E-05 42.2 14.7 231 98-340 126-368 (1005)
240 KOG2611 Neurochondrin/leucine- 94.2 5.2 0.00011 37.9 19.9 232 64-299 16-274 (698)
241 PF13251 DUF4042: Domain of un 94.2 1.2 2.7E-05 36.7 11.5 143 201-344 2-176 (182)
242 PF01603 B56: Protein phosphat 94.2 1.9 4.2E-05 41.0 14.4 233 55-301 129-372 (409)
243 KOG1822 Uncharacterized conser 94.1 6.1 0.00013 43.9 18.8 269 65-342 882-1189(2067)
244 KOG2999 Regulator of Rac1, req 94.0 2.4 5.2E-05 40.7 14.1 156 61-217 85-245 (713)
245 cd03569 VHS_Hrs_Vps27p VHS dom 94.0 0.12 2.5E-06 41.0 4.9 75 314-399 42-117 (142)
246 PF08506 Cse1: Cse1; InterPro 93.9 4 8.6E-05 38.2 15.6 132 242-391 225-370 (370)
247 KOG2933 Uncharacterized conser 93.8 0.33 7.2E-06 42.8 7.7 146 60-214 89-234 (334)
248 PF12231 Rif1_N: Rap1-interact 93.7 6.4 0.00014 37.0 20.5 307 30-343 6-353 (372)
249 PF04063 DUF383: Domain of unk 93.4 1.3 2.8E-05 37.0 10.4 105 195-301 5-134 (192)
250 PF10363 DUF2435: Protein of u 93.4 0.37 7.9E-06 34.8 6.2 77 229-308 5-81 (92)
251 KOG1832 HIV-1 Vpr-binding prot 93.3 2.8 6.1E-05 42.7 13.9 126 221-347 595-778 (1516)
252 PF01603 B56: Protein phosphat 93.2 5.2 0.00011 38.1 15.4 260 120-397 108-371 (409)
253 COG5209 RCD1 Uncharacterized p 93.1 0.98 2.1E-05 38.0 9.0 100 247-347 119-223 (315)
254 PF08506 Cse1: Cse1; InterPro 93.0 1 2.2E-05 42.1 10.2 159 83-252 194-370 (370)
255 PF08167 RIX1: rRNA processing 92.9 0.88 1.9E-05 37.1 8.7 113 185-301 25-145 (165)
256 cd03567 VHS_GGA VHS domain fam 92.9 0.94 2E-05 35.6 8.4 72 314-396 39-116 (139)
257 PF10363 DUF2435: Protein of u 92.8 1.2 2.6E-05 32.2 8.1 71 104-176 6-76 (92)
258 PF08167 RIX1: rRNA processing 92.3 1.9 4.2E-05 35.2 9.9 113 59-175 25-146 (165)
259 PF06371 Drf_GBD: Diaphanous G 92.1 1 2.2E-05 37.6 8.4 111 143-256 66-186 (187)
260 cd03561 VHS VHS domain family; 92.1 1.1 2.4E-05 35.0 8.0 72 314-396 38-112 (133)
261 COG5098 Chromosome condensatio 92.0 14 0.00031 36.9 20.3 112 229-344 301-417 (1128)
262 cd03565 VHS_Tom1 VHS domain fa 91.8 1.2 2.6E-05 35.2 7.9 72 315-397 40-116 (141)
263 KOG2611 Neurochondrin/leucine- 91.7 12 0.00027 35.5 16.5 127 25-153 19-162 (698)
264 PF01347 Vitellogenin_N: Lipop 91.5 2.1 4.6E-05 43.4 11.4 162 60-249 432-614 (618)
265 PF12830 Nipped-B_C: Sister ch 91.3 7.7 0.00017 32.4 13.0 76 10-92 3-78 (187)
266 KOG0891 DNA-dependent protein 91.0 1.7 3.8E-05 49.7 10.6 202 55-258 561-764 (2341)
267 KOG4464 Signaling protein RIC- 91.0 13 0.00029 34.5 16.3 126 8-133 76-233 (532)
268 KOG1848 Uncharacterized conser 90.8 13 0.00028 40.2 15.7 269 113-404 853-1140(1610)
269 cd03572 ENTH_epsin_related ENT 90.8 5.1 0.00011 30.6 9.9 74 314-398 39-121 (122)
270 PF01347 Vitellogenin_N: Lipop 90.8 7.2 0.00016 39.6 14.4 148 115-291 448-614 (618)
271 KOG1992 Nuclear export recepto 90.7 21 0.00046 36.4 17.2 158 186-346 499-672 (960)
272 PF14726 RTTN_N: Rotatin, an a 90.7 2.3 4.9E-05 31.1 7.7 69 312-393 29-97 (98)
273 smart00288 VHS Domain present 90.7 1.5 3.2E-05 34.3 7.3 77 314-401 38-116 (133)
274 KOG0413 Uncharacterized conser 90.4 1.9 4.2E-05 44.2 9.2 131 241-399 944-1076(1529)
275 PF12830 Nipped-B_C: Sister ch 90.4 9.5 0.00021 31.8 13.0 145 102-257 9-167 (187)
276 KOG1525 Sister chromatid cohes 90.3 32 0.00069 37.7 26.5 114 227-343 259-406 (1266)
277 PF00790 VHS: VHS domain; Int 90.2 7.7 0.00017 30.6 11.4 73 314-397 43-119 (140)
278 COG5209 RCD1 Uncharacterized p 90.2 1.6 3.4E-05 36.8 7.2 121 12-132 141-269 (315)
279 cd03568 VHS_STAM VHS domain fa 89.7 1.8 3.9E-05 34.3 7.1 73 271-343 38-111 (144)
280 KOG1822 Uncharacterized conser 89.6 34 0.00073 38.6 18.0 222 28-257 887-1127(2067)
281 PF04869 Uso1_p115_head: Uso1 88.9 12 0.00025 34.2 12.5 176 198-379 51-268 (312)
282 cd03561 VHS VHS domain family; 88.8 7.7 0.00017 30.3 10.1 75 271-345 38-115 (133)
283 PF08767 CRM1_C: CRM1 C termin 88.7 14 0.00031 33.8 13.3 180 201-396 43-244 (319)
284 PF03378 CAS_CSE1: CAS/CSE pro 88.7 15 0.00034 35.2 13.8 239 29-277 42-296 (435)
285 smart00638 LPD_N Lipoprotein N 88.7 29 0.00062 34.9 18.9 134 103-255 395-543 (574)
286 PF08324 PUL: PUL domain; Int 88.3 5 0.00011 35.8 9.9 146 32-179 78-238 (268)
287 KOG2229 Protein required for a 88.3 3.4 7.4E-05 39.3 8.7 112 227-347 16-134 (616)
288 PF14225 MOR2-PAG1_C: Cell mor 88.2 17 0.00036 32.2 12.7 175 19-213 67-253 (262)
289 cd03572 ENTH_epsin_related ENT 88.1 8.4 0.00018 29.4 9.4 87 251-342 24-119 (122)
290 cd03569 VHS_Hrs_Vps27p VHS dom 87.8 4.2 9.2E-05 32.2 8.0 75 59-133 41-116 (142)
291 PLN03076 ARF guanine nucleotid 87.7 58 0.0013 37.4 21.3 202 113-322 1148-1402(1780)
292 smart00638 LPD_N Lipoprotein N 87.6 33 0.00072 34.5 19.7 162 143-335 393-571 (574)
293 PF10521 DUF2454: Protein of u 87.1 7 0.00015 35.1 10.1 131 25-155 127-277 (282)
294 PF10521 DUF2454: Protein of u 86.8 6.3 0.00014 35.4 9.6 69 102-171 120-202 (282)
295 PF12031 DUF3518: Domain of un 86.7 2.4 5.2E-05 36.3 6.2 79 32-111 139-226 (257)
296 PF13001 Ecm29: Proteasome sta 86.5 10 0.00023 37.2 11.6 173 113-300 248-444 (501)
297 cd03567 VHS_GGA VHS domain fam 86.4 3.9 8.5E-05 32.2 7.0 73 271-343 39-117 (139)
298 KOG0392 SNF2 family DNA-depend 86.0 9.8 0.00021 40.6 11.3 233 59-301 77-327 (1549)
299 PF08324 PUL: PUL domain; Int 86.0 1.6 3.5E-05 38.9 5.5 135 155-290 122-265 (268)
300 KOG0413 Uncharacterized conser 85.6 51 0.0011 34.7 16.6 103 19-133 971-1075(1529)
301 cd00197 VHS_ENTH_ANTH VHS, ENT 85.6 5.4 0.00012 30.1 7.4 72 314-396 38-115 (115)
302 KOG1848 Uncharacterized conser 85.3 33 0.00071 37.4 14.6 96 70-170 853-956 (1610)
303 PF13001 Ecm29: Proteasome sta 84.8 42 0.00092 33.0 16.0 220 154-399 248-491 (501)
304 PF12231 Rif1_N: Rap1-interact 84.5 36 0.00079 32.0 23.1 219 115-342 59-303 (372)
305 KOG1525 Sister chromatid cohes 84.5 29 0.00063 38.0 14.3 147 101-257 259-405 (1266)
306 PF12031 DUF3518: Domain of un 83.5 3.8 8.3E-05 35.1 6.1 84 200-284 139-230 (257)
307 smart00288 VHS Domain present 83.4 9 0.0002 29.9 7.9 75 59-133 37-113 (133)
308 KOG1993 Nuclear transport rece 82.8 60 0.0013 33.3 23.3 298 31-343 501-813 (978)
309 PF10274 ParcG: Parkin co-regu 82.6 26 0.00057 28.9 11.3 71 227-299 38-109 (183)
310 PF12463 DUF3689: Protein of u 82.3 25 0.00053 31.8 11.0 126 222-347 4-178 (303)
311 PF04499 SAPS: SIT4 phosphatas 82.2 13 0.00029 36.1 10.0 116 226-345 20-151 (475)
312 PF12074 DUF3554: Domain of un 82.0 8.5 0.00018 35.7 8.6 209 20-238 26-255 (339)
313 KOG2199 Signal transducing ada 81.6 23 0.0005 32.7 10.5 73 271-343 46-119 (462)
314 KOG2199 Signal transducing ada 81.5 4.6 9.9E-05 37.1 6.1 80 314-404 46-126 (462)
315 PF11229 DUF3028: Protein of u 81.5 54 0.0012 31.8 13.9 241 142-399 96-356 (589)
316 PF10274 ParcG: Parkin co-regu 80.6 31 0.00068 28.5 11.2 81 185-267 38-119 (183)
317 KOG0392 SNF2 family DNA-depend 80.4 41 0.0009 36.3 13.1 240 142-399 76-328 (1549)
318 PF14726 RTTN_N: Rotatin, an a 80.3 16 0.00034 26.8 7.5 68 268-337 28-95 (98)
319 PF09324 DUF1981: Domain of un 80.3 4 8.8E-05 29.0 4.5 67 98-168 14-84 (86)
320 KOG2149 Uncharacterized conser 79.5 27 0.00058 32.6 10.4 115 143-259 58-172 (393)
321 KOG0301 Phospholipase A2-activ 78.3 78 0.0017 31.7 15.3 160 32-196 559-727 (745)
322 KOG0301 Phospholipase A2-activ 77.7 81 0.0018 31.6 14.2 173 115-293 557-740 (745)
323 KOG1988 Uncharacterized conser 77.5 45 0.00098 34.4 12.0 224 8-257 52-281 (970)
324 KOG1087 Cytosolic sorting prot 77.1 10 0.00022 36.4 7.4 73 314-397 39-113 (470)
325 PF00790 VHS: VHS domain; Int 76.7 8.4 0.00018 30.4 5.8 75 59-133 42-120 (140)
326 PF08711 Med26: TFIIS helical 75.9 7.7 0.00017 24.5 4.4 35 360-394 13-48 (53)
327 PF04388 Hamartin: Hamartin pr 75.8 55 0.0012 33.6 12.6 72 187-260 72-143 (668)
328 smart00509 TFS2N Domain in the 74.3 14 0.00031 25.4 5.7 35 360-394 35-69 (75)
329 COG5101 CRM1 Importin beta-rel 74.2 1E+02 0.0022 30.9 19.7 115 243-362 498-619 (1053)
330 cd08050 TAF6 TATA Binding Prot 73.6 55 0.0012 30.4 11.1 97 115-212 230-338 (343)
331 KOG4464 Signaling protein RIC- 73.3 83 0.0018 29.6 21.3 155 104-258 48-232 (532)
332 PF04499 SAPS: SIT4 phosphatas 73.0 38 0.00083 33.0 10.2 113 185-301 21-150 (475)
333 KOG1410 Nuclear transport rece 72.2 1.2E+02 0.0025 30.8 17.9 316 61-395 7-333 (1082)
334 KOG0889 Histone acetyltransfer 71.6 2.6E+02 0.0055 34.5 17.8 161 139-300 1122-1307(3550)
335 PF11229 DUF3028: Protein of u 71.1 1.1E+02 0.0023 29.9 17.5 227 102-340 98-351 (589)
336 PF04821 TIMELESS: Timeless pr 71.0 35 0.00077 30.3 8.9 75 326-400 133-212 (266)
337 KOG2085 Serine/threonine prote 70.7 42 0.0009 31.5 9.2 197 49-253 167-366 (457)
338 PF08713 DNA_alkylation: DNA a 70.7 65 0.0014 27.3 10.8 108 61-184 87-196 (213)
339 PF12726 SEN1_N: SEN1 N termin 70.5 1.1E+02 0.0023 32.0 13.6 105 193-300 449-554 (727)
340 KOG2149 Uncharacterized conser 70.2 47 0.001 31.0 9.5 114 228-344 59-172 (393)
341 KOG2549 Transcription initiati 70.2 1.1E+02 0.0025 29.9 13.0 140 63-213 211-369 (576)
342 PF06685 DUF1186: Protein of u 70.0 77 0.0017 27.8 14.5 129 183-317 71-201 (249)
343 cd03565 VHS_Tom1 VHS domain fa 69.6 35 0.00076 26.9 7.7 73 271-343 39-116 (141)
344 COG5537 IRR1 Cohesin [Cell div 69.1 1.2E+02 0.0025 30.3 12.1 136 69-214 285-422 (740)
345 PF14225 MOR2-PAG1_C: Cell mor 69.1 83 0.0018 27.9 17.0 211 27-256 17-253 (262)
346 cd00183 TFIIS_I N-terminal dom 69.0 24 0.00053 24.3 6.0 35 360-394 37-71 (76)
347 KOG2038 CAATT-binding transcri 68.9 1.4E+02 0.0031 30.6 17.9 143 67-218 219-374 (988)
348 PF01417 ENTH: ENTH domain; I 68.4 36 0.00078 26.1 7.5 99 282-398 15-123 (125)
349 PF12054 DUF3535: Domain of un 67.8 1.1E+02 0.0024 29.6 12.1 300 73-387 101-434 (441)
350 cd08050 TAF6 TATA Binding Prot 67.7 46 0.001 30.9 9.3 112 142-255 209-338 (343)
351 PF09758 FPL: Uncharacterised 66.0 26 0.00056 27.9 6.1 127 258-393 14-146 (149)
352 PF04064 DUF384: Domain of unk 65.7 34 0.00074 22.2 5.6 45 359-403 11-56 (58)
353 PF11791 Aconitase_B_N: Aconit 65.6 53 0.0011 26.1 7.6 101 144-257 23-123 (154)
354 KOG2213 Apoptosis inhibitor 5/ 65.5 1.2E+02 0.0026 28.4 11.9 54 199-258 38-91 (460)
355 PF04388 Hamartin: Hamartin pr 65.3 74 0.0016 32.6 10.9 81 72-152 81-161 (668)
356 PF08216 CTNNBL: Catenin-beta- 64.6 8.5 0.00018 28.5 3.1 42 35-77 64-105 (108)
357 PF08389 Xpo1: Exportin 1-like 63.9 14 0.0003 29.1 4.6 61 272-337 84-148 (148)
358 KOG2011 Sister chromatid cohes 63.6 2.2E+02 0.0047 30.7 14.1 140 241-401 300-441 (1048)
359 KOG2676 Uncharacterized conser 63.0 10 0.00022 34.5 3.8 63 37-99 376-440 (478)
360 PF04869 Uso1_p115_head: Uso1 62.7 1.2E+02 0.0027 27.6 14.5 152 241-404 51-239 (312)
361 PF08064 UME: UME (NUC010) dom 62.7 40 0.00087 25.1 6.5 78 227-309 11-93 (107)
362 cd00197 VHS_ENTH_ANTH VHS, ENT 62.0 65 0.0014 24.2 9.2 70 271-340 38-113 (115)
363 KOG1788 Uncharacterized conser 61.2 2.4E+02 0.0052 30.5 16.7 254 38-298 663-981 (2799)
364 KOG2005 26S proteasome regulat 60.6 2E+02 0.0042 29.2 14.7 65 229-301 642-706 (878)
365 PF09758 FPL: Uncharacterised 60.6 41 0.0009 26.7 6.4 124 48-171 15-148 (149)
366 smart00802 UME Domain in UVSB 60.4 48 0.001 24.7 6.5 78 227-309 11-93 (107)
367 KOG2022 Nuclear transport rece 59.9 1.9E+02 0.0041 30.4 12.1 157 2-173 450-620 (982)
368 PF12463 DUF3689: Protein of u 59.8 1.4E+02 0.003 27.2 13.1 102 32-133 47-175 (303)
369 KOG1992 Nuclear export recepto 58.8 2.3E+02 0.0051 29.5 22.8 67 24-90 45-119 (960)
370 PF06685 DUF1186: Protein of u 58.5 1.3E+02 0.0028 26.5 13.6 94 57-162 71-173 (249)
371 KOG2011 Sister chromatid cohes 58.0 2.7E+02 0.0059 30.0 13.9 134 195-339 297-432 (1048)
372 KOG0803 Predicted E3 ubiquitin 57.9 3.1E+02 0.0067 30.7 14.3 202 187-396 43-263 (1312)
373 KOG2073 SAP family cell cycle 55.2 2.8E+02 0.006 29.3 15.2 180 92-282 181-377 (838)
374 PF12783 Sec7_N: Guanine nucle 54.5 99 0.0022 25.1 8.2 84 97-181 69-155 (168)
375 KOG4524 Uncharacterized conser 54.3 85 0.0018 33.0 8.9 92 102-194 804-898 (1014)
376 KOG2549 Transcription initiati 54.1 2.3E+02 0.0049 28.0 11.5 141 144-297 208-368 (576)
377 COG4370 Uncharacterized protei 53.2 16 0.00036 32.6 3.4 16 416-431 58-73 (412)
378 PF12074 DUF3554: Domain of un 53.2 1.9E+02 0.0041 26.7 17.9 193 102-302 23-238 (339)
379 PF01365 RYDR_ITPR: RIH domain 53.2 68 0.0015 27.2 7.3 117 223-345 39-172 (207)
380 PF07571 DUF1546: Protein of u 52.8 71 0.0015 23.0 6.2 58 113-170 17-76 (92)
381 PF12765 Cohesin_HEAT: HEAT re 52.8 18 0.00039 21.6 2.6 27 365-391 16-42 (42)
382 PF08064 UME: UME (NUC010) dom 51.8 77 0.0017 23.6 6.5 68 143-215 11-84 (107)
383 KOG1087 Cytosolic sorting prot 51.4 84 0.0018 30.5 8.1 72 271-342 39-112 (470)
384 PF14666 RICTOR_M: Rapamycin-i 49.3 1.7E+02 0.0038 25.2 12.0 131 115-257 77-225 (226)
385 PF12783 Sec7_N: Guanine nucle 49.1 1.4E+02 0.0031 24.1 8.8 77 181-258 69-147 (168)
386 PF14631 FancD2: Fanconi anaem 48.7 83 0.0018 35.4 8.6 134 21-161 439-572 (1426)
387 KOG2022 Nuclear transport rece 48.6 3.5E+02 0.0076 28.5 15.3 143 158-311 482-632 (982)
388 PF11791 Aconitase_B_N: Aconit 48.3 45 0.00097 26.5 4.7 45 287-343 80-124 (154)
389 PF08216 CTNNBL: Catenin-beta- 47.7 28 0.00061 25.9 3.4 42 246-288 64-105 (108)
390 PF09324 DUF1981: Domain of un 47.4 65 0.0014 22.8 5.2 66 225-295 15-84 (86)
391 KOG2021 Nuclear mRNA export fa 47.3 3.5E+02 0.0075 28.1 24.0 56 197-257 205-260 (980)
392 PF12054 DUF3535: Domain of un 46.9 2.8E+02 0.0061 26.9 16.1 223 116-348 101-348 (441)
393 PF11894 DUF3414: Protein of u 46.6 5.4E+02 0.012 30.1 18.3 64 32-95 579-646 (1691)
394 cd03562 CID CID (CTD-Interacti 46.4 1.2E+02 0.0027 22.6 7.2 90 114-212 17-106 (114)
395 KOG2021 Nuclear mRNA export fa 45.8 3.6E+02 0.0079 27.9 23.2 60 27-90 203-262 (980)
396 PF08623 TIP120: TATA-binding 45.4 91 0.002 25.5 6.3 76 157-237 41-116 (169)
397 PF08767 CRM1_C: CRM1 C termin 44.2 2.6E+02 0.0056 25.7 14.8 185 159-346 43-248 (319)
398 KOG4524 Uncharacterized conser 44.1 1.1E+02 0.0024 32.3 7.9 95 142-238 802-900 (1014)
399 PF08389 Xpo1: Exportin 1-like 44.1 78 0.0017 24.7 6.0 63 143-209 82-148 (148)
400 smart00802 UME Domain in UVSB 43.6 86 0.0019 23.4 5.5 68 11-88 11-83 (107)
401 PF08623 TIP120: TATA-binding 42.9 1.2E+02 0.0027 24.7 6.7 77 115-195 40-116 (169)
402 KOG2073 SAP family cell cycle 42.7 4.4E+02 0.0095 27.9 18.0 175 142-324 189-376 (838)
403 PF14631 FancD2: Fanconi anaem 42.3 1.1E+02 0.0024 34.5 8.3 128 112-246 445-572 (1426)
404 PF06012 DUF908: Domain of Unk 41.1 1.4E+02 0.003 27.6 7.8 61 34-95 239-304 (329)
405 PF14663 RasGEF_N_2: Rapamycin 41.0 78 0.0017 23.9 5.1 38 60-98 9-46 (115)
406 smart00567 EZ_HEAT E-Z type HE 40.9 58 0.0013 17.3 3.4 14 243-256 2-15 (30)
407 PF04118 Dopey_N: Dopey, N-ter 40.5 2.9E+02 0.0063 25.2 14.1 138 106-253 59-197 (307)
408 KOG2005 26S proteasome regulat 39.9 4.3E+02 0.0092 27.0 16.1 212 58-272 47-315 (878)
409 PF01365 RYDR_ITPR: RIH domain 39.8 93 0.002 26.3 6.1 102 50-154 34-153 (207)
410 PF03130 HEAT_PBS: PBS lyase H 39.3 24 0.00051 18.6 1.5 26 118-153 1-26 (27)
411 PF12397 U3snoRNP10: U3 small 38.9 1.7E+02 0.0037 22.1 9.6 67 20-90 10-76 (121)
412 COG5537 IRR1 Cohesin [Cell div 38.6 4.2E+02 0.0092 26.6 13.7 100 153-257 285-386 (740)
413 PF14663 RasGEF_N_2: Rapamycin 37.3 1.8E+02 0.0039 21.9 10.4 102 271-397 9-111 (115)
414 KOG1791 Uncharacterized conser 37.0 6.8E+02 0.015 28.5 14.3 118 223-343 1536-1661(1758)
415 PF04054 Not1: CCR4-Not comple 36.3 3.2E+02 0.007 25.8 9.3 87 142-239 261-353 (379)
416 KOG1832 HIV-1 Vpr-binding prot 36.3 2E+02 0.0044 30.2 8.3 132 160-293 326-462 (1516)
417 KOG4231 Intracellular membrane 36.3 24 0.00052 33.9 1.9 67 232-299 333-399 (763)
418 COG5095 TAF6 Transcription ini 35.4 3E+02 0.0065 24.9 8.2 146 103-258 199-360 (450)
419 PF13925 Katanin_con80: con80 34.8 2.5E+02 0.0054 22.8 8.8 75 99-174 26-100 (164)
420 KOG2213 Apoptosis inhibitor 5/ 33.9 4.1E+02 0.009 25.1 15.1 175 157-339 38-223 (460)
421 PLN03205 ATR interacting prote 33.9 4.2E+02 0.009 25.1 11.5 160 142-302 322-519 (652)
422 PF12726 SEN1_N: SEN1 N termin 33.7 5.8E+02 0.012 26.7 23.1 114 271-398 442-555 (727)
423 PF14666 RICTOR_M: Rapamycin-i 33.7 3.2E+02 0.0068 23.7 13.4 130 200-342 79-225 (226)
424 PF08713 DNA_alkylation: DNA a 33.3 88 0.0019 26.5 5.0 134 112-269 61-196 (213)
425 KOG2038 CAATT-binding transcri 32.9 5.9E+02 0.013 26.6 19.4 102 60-171 305-408 (988)
426 KOG1788 Uncharacterized conser 32.5 7E+02 0.015 27.3 14.9 65 60-125 467-532 (2799)
427 KOG1988 Uncharacterized conser 31.9 6.4E+02 0.014 26.7 13.3 174 67-257 32-206 (970)
428 cd03562 CID CID (CTD-Interacti 31.4 1.6E+02 0.0034 22.0 5.5 70 227-297 37-106 (114)
429 PF07626 PSD3: Protein of unkn 31.3 90 0.002 20.9 3.6 40 386-425 7-46 (67)
430 PF12397 U3snoRNP10: U3 small 30.9 2.3E+02 0.0051 21.3 10.3 69 141-215 4-75 (121)
431 PF09026 CENP-B_dimeris: Centr 30.8 16 0.00036 26.1 0.0 10 418-427 38-47 (101)
432 PRK09169 hypothetical protein; 30.5 1E+03 0.022 28.6 25.3 64 24-88 171-235 (2316)
433 PF07539 DRIM: Down-regulated 30.3 2.7E+02 0.006 21.9 7.3 82 59-153 17-98 (141)
434 PLN03205 ATR interacting prote 28.1 2.1E+02 0.0045 27.0 6.3 111 228-340 324-444 (652)
435 PF04118 Dopey_N: Dopey, N-ter 27.5 4.8E+02 0.01 23.8 21.3 193 141-345 52-257 (307)
436 PF10257 RAI16-like: Retinoic 27.2 3.5E+02 0.0077 25.2 8.1 143 263-414 2-173 (353)
437 PF14911 MMS22L_C: S-phase gen 26.8 5.5E+02 0.012 24.2 9.6 32 142-173 255-288 (373)
438 TIGR03504 FimV_Cterm FimV C-te 25.0 1.3E+02 0.0028 18.2 3.2 28 366-393 16-43 (44)
439 PF14868 DUF4487: Domain of un 24.6 3.4E+02 0.0073 27.3 7.6 75 228-302 480-555 (559)
440 PF14228 MOR2-PAG1_mid: Cell m 24.3 1E+03 0.022 26.5 20.2 70 59-133 196-277 (1120)
441 TIGR01385 TFSII transcription 24.3 2E+02 0.0044 26.1 5.7 37 360-396 37-73 (299)
442 PF07923 N1221: N1221-like pro 24.3 1.1E+02 0.0025 27.6 4.2 55 269-323 59-126 (293)
443 PF15573 Imm27: Immunity prote 23.9 2.5E+02 0.0055 24.0 5.6 72 62-153 49-121 (259)
444 cd06561 AlkD_like A new struct 23.4 2.9E+02 0.0063 22.9 6.4 74 188-268 108-181 (197)
445 KOG1791 Uncharacterized conser 23.4 1.2E+03 0.025 26.9 15.2 220 50-300 1430-1661(1758)
446 PF03542 Tuberin: Tuberin; In 23.4 6.2E+02 0.013 23.7 11.1 144 60-216 142-305 (356)
447 KOG2676 Uncharacterized conser 22.9 1.1E+02 0.0024 28.2 3.7 62 205-267 376-439 (478)
448 PF14868 DUF4487: Domain of un 22.5 6.8E+02 0.015 25.2 9.2 69 106-174 484-554 (559)
449 PF14750 INTS2: Integrator com 22.3 8.6E+02 0.019 26.8 10.5 120 57-176 873-1027(1049)
450 KOG2219 Uncharacterized conser 21.8 2.7E+02 0.0058 28.1 6.1 61 154-214 38-103 (864)
451 PF07539 DRIM: Down-regulated 21.1 1.9E+02 0.004 22.9 4.3 36 361-396 11-46 (141)
452 KOG2256 Predicted protein invo 21.1 8.9E+02 0.019 24.7 12.3 168 60-238 283-475 (661)
453 cd06561 AlkD_like A new struct 21.1 4.6E+02 0.0099 21.6 7.1 73 105-183 109-181 (197)
454 KOG2152 Sister chromatid cohes 20.9 9.6E+02 0.021 25.0 11.4 54 79-132 349-406 (865)
455 PF09831 DUF2058: Uncharacteri 20.9 78 0.0017 26.1 2.1 19 400-418 155-173 (177)
456 PF07923 N1221: N1221-like pro 20.6 2.1E+02 0.0045 25.9 5.1 45 24-69 68-126 (293)
457 PRK09169 hypothetical protein; 20.6 1.5E+03 0.034 27.3 25.2 15 380-394 581-595 (2316)
458 KOG2085 Serine/threonine prote 20.6 7.5E+02 0.016 23.6 14.0 40 91-131 167-206 (457)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-61 Score=440.44 Aligned_cols=410 Identities=65% Similarity=1.027 Sum_probs=382.2
Q ss_pred chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
+..++.|++|.+|. +|...+++.+|..|+|+|.|+++++.+..+.+++.|++|.+++++.+++..++++|+|+|+
T Consensus 103 ~~vi~~G~v~~lV~-----~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALg 177 (514)
T KOG0166|consen 103 DEVIQSGVVPRLVE-----FLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALG 177 (514)
T ss_pred HHHHHcCcHHHHHH-----HHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHh
Confidence 34567799999999 7777888999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA 163 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 163 (431)
|++.+++.+|+.+...|++.+|+.++..+....+.+++.|+|+|||++. |.+.......++|.|..++.+.|+++...+
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da 257 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA 257 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999965555689999999999999998 888888999999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088 164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 243 (431)
Q Consensus 164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 243 (431)
+|++++++.+.++.++.+++.|+++.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.++++.|..++...+.+.
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKES 337 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999654778
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088 244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 323 (431)
+|++|||+++|++.++++.++.+++.|++|.|+.+++.++.++|++|+|+++|++..+++++..++++.|++++++++|.
T Consensus 338 ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 014088 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP 403 (431)
Q Consensus 324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~ 403 (431)
-.|.++...++.+|.++++.++....... +++..+++++||+++|+.|++|+|.+++++|..++++||++|+++++
T Consensus 418 ~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~ 493 (514)
T KOG0166|consen 418 CPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDEDD 493 (514)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999998764321 78999999999999999999999999999999999999999865554
Q ss_pred C-CCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088 404 L-PPGDATQAGFGFAGNGLPVPSGGFNF 430 (431)
Q Consensus 404 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
. |..+ .|+|..+ .|.|||||
T Consensus 494 ~~~~~~----~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 494 QQPTTS----QFTFQVQ---APDGGFNF 514 (514)
T ss_pred cccccc----ccccCCC---CCCCCCCC
Confidence 3 3332 6666554 89999998
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-57 Score=385.75 Aligned_cols=416 Identities=55% Similarity=0.874 Sum_probs=380.5
Q ss_pred cchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 014088 4 FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 83 (431)
Q Consensus 4 ~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L 83 (431)
++..++.|++|+||+ +|.++...-++..|+|+|.|++++.....+.+++.|++|.++++|.+++.+++++++|+|
T Consensus 107 Iq~VIdaGvVpRfve-----fm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWAL 181 (526)
T COG5064 107 IQPVIDAGVVPRFVE-----FMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWAL 181 (526)
T ss_pred chhHHhccccHHHHH-----HHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHh
Confidence 355688999999999 665777778999999999999999888888999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHH
Q 014088 84 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLT 161 (431)
Q Consensus 84 ~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 161 (431)
+|++.+++.+|+.+.+.|++++++.++.++. +..+.+++.|.|+|||++. |.+........+|.|.+++.+.|+++..
T Consensus 182 GNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlv 261 (526)
T COG5064 182 GNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred ccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHH
Confidence 9999999999999999999999999996443 4689999999999999998 7778888899999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccch
Q 014088 162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 241 (431)
Q Consensus 162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 241 (431)
.|+|++++++..+.++++.+++.|....|+.+|.+++..++..+++.++|++.+++.+.+.+++.|+++.+..+|+++ .
T Consensus 262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-k 340 (526)
T COG5064 262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-K 340 (526)
T ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHH
Q 014088 242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~ 319 (431)
..+|++|||+++|++.++.+.++++++.+++|+|+.+|...+..++++|||+++|..+++ .|+..+++++.|++++|.
T Consensus 341 e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 899999999999999999999999999999999999999999999999999999999876 578999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
++|...+..+.+.++.++.++++.++..+.. +....|.|...+.+.|+++.|..++++.|.+++.+|-.+++.||.+||
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccch
Confidence 9999888889999999999999988887643 345668899999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCc
Q 014088 400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFN 429 (431)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
.-|++.|.- .-..|+|..+ +-|.|.||
T Consensus 500 ~vd~lapet-~g~tftfg~~--~~~qg~f~ 526 (526)
T COG5064 500 AVDELAPET-AGNTFTFGSN--VNQQGNFN 526 (526)
T ss_pred hhhhcCccc-cCCeeecCCC--ccccCCCC
Confidence 877765443 3455777544 34556554
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-38 Score=290.71 Aligned_cols=331 Identities=26% Similarity=0.421 Sum_probs=295.0
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALG 84 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~ 84 (431)
..++.|.+|.|+. |..+++.+++++|+|+|+|++.+++..|+.+++.|+++.|+.++..... .+.+.+.|+|+
T Consensus 147 ~vv~agavp~fi~------Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQ------LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccCCchHHHHH------HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence 3467899999999 7778889999999999999999999999999999999999999988664 88899999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA 163 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 163 (431)
|+|++....-..-.-..+++.|..++ ++.|+++...|+|++++|+.+. +..++....|++|.|+++|.+.+..++..|
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~Pa 299 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPA 299 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHH
Confidence 99976521112222334788999999 8899999999999999999887 555666779999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh
Q 014088 164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 242 (431)
Q Consensus 164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 242 (431)
+++++|++.+.+...+.+++.|+++.|..++. ++...++..|+|+++|++.++..+++.+++.+++|.|+.+|++. +.
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef 378 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EF 378 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-ch
Confidence 99999999999999999999999999999998 56677999999999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHCCC
Q 014088 243 SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGC 314 (431)
Q Consensus 243 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~ 314 (431)
++|++|+|+++|++. ++++...++++.|++++++++|...+.++...++.++.++...+. ......+.+.|+
T Consensus 379 ~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg 458 (514)
T KOG0166|consen 379 DIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC
Confidence 999999999999998 689999999999999999999999999999999999999976542 234456668899
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 315 IKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
++++-.+-.+.+.++...|..++.+.+..+
T Consensus 459 ldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 459 LDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred hhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-38 Score=267.08 Aligned_cols=329 Identities=25% Similarity=0.348 Sum_probs=287.8
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHH
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALG 84 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~ 84 (431)
.++.|.+|.|+. |+++.+.+++++++|+|+|++.+++..|+++.+.|+++.++.++.+. +..+.+.+.|+|+
T Consensus 153 Vvd~~AVPlfiq------lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 153 VVDAGAVPLFIQ------LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred EEeCCchHHHHH------HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 356799999999 66677789999999999999999999999999999999999998874 4588999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA 163 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 163 (431)
|+|+.....-+.-.-...++.|.+++ .+.|+++...|+|++++++... .........+..+.|+++|.+++..++..+
T Consensus 227 NlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 227 NLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred HhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 99964321111111123688888888 8889999999999999999986 444455557888899999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088 164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 243 (431)
Q Consensus 164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 243 (431)
++.++|+..+.+...+.++..|+++.+..+|.++...++..+||+++|+..++.++.+.+++.+++|.|+.+|... +..
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k 384 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYK 384 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHH
Confidence 9999999999998889999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH----------HHHHHHH
Q 014088 244 IKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN----------EQIKFLV 310 (431)
Q Consensus 244 v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~ 310 (431)
++++|||+++|.+. ..|+.++++++.|++.+|+++|...+.++-+.++.++.|+...+.. .+..++.
T Consensus 385 ~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE 464 (526)
T COG5064 385 IKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVE 464 (526)
T ss_pred HHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHH
Confidence 99999999999997 3689999999999999999999999888888899999999876532 3444555
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 311 ~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
+.|+++.+..+-++.+..+..+|..++..++..
T Consensus 465 ~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 465 KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred hcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 689999999999999999999999999988743
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=302.71 Aligned_cols=378 Identities=19% Similarity=0.209 Sum_probs=330.4
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 85 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 85 (431)
...+.|++|.++. +..++++..|..|++.|++++.++++++..+++.|++|.|+++|.+++..+++.|+|+|+|
T Consensus 441 aIi~~ggIp~LV~------LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~N 514 (2102)
T PLN03200 441 ALGGREGVQLLIS------LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWN 514 (2102)
T ss_pred HHHHcCcHHHHHH------HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456688999999 5556778999999999999999889999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-----------------------------
Q 014088 86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP----------------------------- 136 (431)
Q Consensus 86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~----------------------------- 136 (431)
++.+.+..+..+...|++++|+++| ++.+.+.+..++|+|.+++......
T Consensus 515 La~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 515 LCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 9998878888888899999999999 6668999999999999997532110
Q ss_pred -----Chh----hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088 137 -----LFE----QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207 (431)
Q Consensus 137 -----~~~----~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 207 (431)
... ...++++.|.++++++++++++.|+|+|.+++.+.++..+.++..|+++.++.+|++.+.+++..+++
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 000 02468999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088 208 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286 (431)
Q Consensus 208 ~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 286 (431)
+|++++... +.+...+++.|+++.|+++|++. +.+++..|+.+|.|++.. ++....+.+.|+++.|++++.+++++.
T Consensus 674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 999999644 34456678999999999999998 999999999999999997 566778888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHH-H-HHHHHCCChHHHHhhcCCCCHHHHHH--HHHHHHHHHHhhhhhhhcCCCCCcchHHHH
Q 014088 287 KKEAAWAISNATSGGSNEQ-I-KFLVSQGCIKPLCDLLNCPDPRIVTV--CLEGLENILKAGEAEKNMGNTGGVNLFAQA 362 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~-~-~~l~~~~~l~~L~~ll~~~~~~v~~~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (431)
|++|+++|.+++...+.+. . ..+...|.+.+|+++|+..|.+.... ++.+|..+.+..+... ...+++..+
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~-----~~~~~~~~~ 826 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGAN-----FSHPPWAVL 826 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCC-----CCCCchhhH
Confidence 9999999999999886544 3 56678999999999999888776665 9999999998655543 234668889
Q ss_pred HHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 363 IDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 363 l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
++..++++.|...+.+.+|.++++|..+|++++.+
T Consensus 827 ~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 827 AEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 99999999998888999999999999999999875
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=302.06 Aligned_cols=365 Identities=18% Similarity=0.221 Sum_probs=321.3
Q ss_pred hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+.|+++.+|. |..+.+.++|..++++|.+++.++.+.++.+.+.|++|.|+++|.+++..+++.++|+|++++.
T Consensus 402 ~~daik~LV~------LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~ 475 (2102)
T PLN03200 402 HAEAKKVLVG------LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475 (2102)
T ss_pred hccchhhhhh------hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3456666666 5556678999999999999999889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-HhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWAL 167 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L 167 (431)
.+++.+..+.+.|++++|+++| .+++.++++.|+|+|+|++.+.+..+... ..|.+|.|+++|++++++.+..++++|
T Consensus 476 ~ndenr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 476 EVDESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTL 554 (2102)
T ss_pred CCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888899999999999999999 67889999999999999998754444333 469999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSI 244 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v 244 (431)
.+++.+.+.. .++.++.++.++++.++..++.+++++....+. ........++++.|.++++++ ++.+
T Consensus 555 ~nLi~~~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~i 625 (2102)
T PLN03200 555 TKLVRTADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEET 625 (2102)
T ss_pred HHHHhccchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHH
Confidence 9998765432 337788899999999999999999998653332 222233579999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
++.|+|+|.|++.++++..+.++..|++++++.++..++.+++++++|+|.+++.....++...+.+.|++++|+++++.
T Consensus 626 kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~ 705 (2102)
T PLN03200 626 QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS 705 (2102)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC
Confidence 99999999999999899999999999999999999999999999999999999988777888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088 325 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 402 (431)
Q Consensus 325 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~ 402 (431)
.+.++...++.+|.++++.++. +..+.+.|+++.|.+++.+.+++.|+.|.++|..++.....+|
T Consensus 706 ~d~~v~e~Al~ALanLl~~~e~-------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 706 SSIEVAEQAVCALANLLSDPEV-------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred CChHHHHHHHHHHHHHHcCchH-------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 9999999999999999998875 3445568999999999999999999999999988887665555
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-31 Score=228.74 Aligned_cols=356 Identities=21% Similarity=0.247 Sum_probs=312.0
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
.+..+.++.+|..+..+++|++. +.+++-.+++.+++..|+.-+..+..++|..+..|++|++..+ .++..+...|++
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL 169 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGAL 169 (550)
T ss_pred HHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccch
Confidence 45668889999999999999997 6778888888899999999888899999999999999999774 468889999999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
.++.+ |.++.+..+++++..+|.|+....+..+.....|.+|.|++++.++|.+++.+++.++++++-....+ +.+.+
T Consensus 170 ~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R-k~Laq 247 (550)
T KOG4224|consen 170 EPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR-KILAQ 247 (550)
T ss_pred hhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH-HHHHh
Confidence 99999 55889999999999999999998877888888999999999999999999999999999999776544 45777
Q ss_pred hC--cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088 184 AG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 184 ~~--~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 261 (431)
.+ +++.|+.+++++++.++..|..+|++++.... +...+++.|.+|.++++++++ .-....+...++.|++.+ +-
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisih-pl 324 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIH-PL 324 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccc-cC
Confidence 66 99999999999999999999999999998765 666789999999999999988 677778888899999986 55
Q ss_pred HHHHHHHhCCHHHHHHHHccCC-HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088 262 QIQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l 340 (431)
+...+++.|++.+|+++|..++ .+++..|..+|.|++... ....+.+.+.|.++++..++......++...-.++..+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 5567889999999999999984 559999999999998754 36778889999999999999988889998888888877
Q ss_pred HHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 341 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
.-.+. ++..+.+.|.++.|..+..+.+++++..|..+|.++.++-++
T Consensus 404 al~d~-------------~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 404 ALNDN-------------DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred Hhccc-------------cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 65544 377788899999999999999999999999999888765443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-29 Score=213.05 Aligned_cols=350 Identities=23% Similarity=0.267 Sum_probs=297.9
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 107 (431)
++..++|..++.|+.|++.. ++++..+...|++.++.++-++.+..+|..+..+|.|++.. .+.|+.++..|+++.|+
T Consensus 137 td~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLV 214 (550)
T KOG4224|consen 137 TDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLV 214 (550)
T ss_pred CCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhh
Confidence 45569999999999999985 78999999999999999988899999999999999999754 45789999999999999
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhh--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 185 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 185 (431)
+++ .+.|.+++.+++.++++++-+....+.....+ ++|.|+.++.+++++++..|..+|++++.+.. .+..+++.|
T Consensus 215 sll-~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag 292 (550)
T KOG4224|consen 215 SLL-KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAG 292 (550)
T ss_pred hhh-ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcC
Confidence 999 88899999999999999998864455554444 99999999999999999999999999998765 445589999
Q ss_pred cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHH
Q 014088 186 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 265 (431)
Q Consensus 186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 265 (431)
.+|.++++++++..........|+.|++.+.- +...+++.|++.+|+.+|....+++++-.|..+|.|++..+......
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~ 371 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV 371 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence 99999999999988888999999999988644 44567799999999999998856779999999999999988899999
Q ss_pred HHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 266 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 266 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
+.+.|.+|.+..++.++...++.+...++..++.+. .....+.+.|+++.|+.++.+.+.+++-.+..+|.|+...-+
T Consensus 372 i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 372 IRESGAIPKLIELLLDGPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 999999999999999999999999999999998865 566788899999999999999999999999999999987654
Q ss_pred hhhhcCCCCCcchHHHHHHhh----ccH-HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 346 AEKNMGNTGGVNLFAQAIDDA----EGL-EKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~----~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
. |...++-- +++ -.|.++..++...++..|.|.+..+..
T Consensus 450 ~------------YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 450 H------------YARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred H------------HHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3 33333221 122 235556666667777777776666543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=8.3e-24 Score=205.13 Aligned_cols=354 Identities=20% Similarity=0.193 Sum_probs=293.0
Q ss_pred hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+.|+++.++. +|. +++.++...++.+|.+++. ..+++..+.+.|+++.|.+++.+++..++..++++|.|++.
T Consensus 288 ~~~iV~~Lv~-----~Ld-r~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 288 NKGIVSLLVK-----CLD-RENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred hcCCHHHHHH-----HHc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc
Confidence 4467777776 554 5678999999999999998 67899999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWAL 167 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L 167 (431)
+.. .|..++..|.++.|+.+|. ++..+..++.+|+++|.+..........+.+|.+++++- .+++++...++..+
T Consensus 361 d~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 361 DPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred CHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence 764 6999999999999999994 345667899999999998766666666789999998765 45677778888999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 247 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 247 (431)
.|++.+.. ..+.+.+.++++.|+........ ...++.+.|++.+.+.....+. +.+..|+..+..+.+++...+
T Consensus 437 iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE 510 (708)
T PF05804_consen 437 INLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVE 510 (708)
T ss_pred HHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHH
Confidence 99998875 45778888889999887644332 2355789999988754443333 578888888887768899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC- 324 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~- 324 (431)
++.+|+|+...+.+..+.+.+.+++|.+.++|..+ ..++..+++.+++.++.. ++.+..+.+.|+++.|+++++.
T Consensus 511 ~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 511 CLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhh
Confidence 99999999987667677777789999999999876 568999999999999874 4788888899999999999975
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 325 -PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 325 -~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.|.++....+.++++++.+.+.. ..++.+.+....+.+++++.|+++++.|..+|+-
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 46889999999999999886542 4556778889999999999999999888777765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=2.9e-20 Score=180.60 Aligned_cols=324 Identities=18% Similarity=0.191 Sum_probs=266.4
Q ss_pred chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
+...+.|++|.+++ +..+++.+++..++++|.|++. +++.|..+++.|++|.|+.+|.++ ..+..++.+|.
T Consensus 325 ~~m~~~giV~kL~k------Ll~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy 395 (708)
T PF05804_consen 325 DEMAESGIVEKLLK------LLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILY 395 (708)
T ss_pred HHHHHcCCHHHHHH------HhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHH
Confidence 34457799999999 6667888999999999999998 688999999999999999999864 45667999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-CChHHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDA 163 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a 163 (431)
++|.+. ..|..+...++++.+++++..++++.+...+++++.|++.+....+.....++++.|++..-. .++- .
T Consensus 396 ~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----L 470 (708)
T PF05804_consen 396 NLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----L 470 (708)
T ss_pred HhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----H
Confidence 999865 468889999999999999878788888888999999999997666555566788888876543 4433 3
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-ch
Q 014088 164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YK 241 (431)
Q Consensus 164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~ 241 (431)
+..+.|++.+++.....+. +++..++.++.. ++++....++++|+|+...+....+.+-+.+++|.+.++|..+ ..
T Consensus 471 lKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~ 548 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE 548 (708)
T ss_pred HHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 4688999998854434343 577778887766 4678899999999999876655555556789999999999755 24
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHH
Q 014088 242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPL 318 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L 318 (431)
+++..+++..++.++.. +.....+.+.|+++.|++++... |.++..+.++++..+..+. +.+..+. +.+++..|
T Consensus 549 dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 549 DDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYL 625 (708)
T ss_pred hHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHH
Confidence 67999999999999875 78788888999999999999775 7899999999999999986 4555554 57899999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 319 CDLLNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
++++++++++++..|-.+|--++..++..
T Consensus 626 idL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 626 IDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 99999999999999999999888877654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=1.1e-19 Score=172.60 Aligned_cols=360 Identities=19% Similarity=0.193 Sum_probs=279.8
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH--HHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CRDLVL 98 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 98 (431)
.+++|. +.++.+|..|..-+.-+|..+.+.+..+.+.|+|+.|+.+|.++..+++.+++++|.||...... ++-.+.
T Consensus 238 ~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~ 316 (717)
T KOG1048|consen 238 VISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIK 316 (717)
T ss_pred HHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhh
Confidence 445665 66789999999999999999999999999999999999999999999999999999999965544 678899
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--------------ChHHHHHHH
Q 014088 99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVLTDAC 164 (431)
Q Consensus 99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--------------~~~v~~~a~ 164 (431)
+.++++.++++|++..|.++++.+..+||||+..+ ...+......++.|...+-.+ +.++..++.
T Consensus 317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~t 395 (717)
T KOG1048|consen 317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVT 395 (717)
T ss_pred hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhh
Confidence 99999999999988899999999999999999883 444455566677666544311 357888999
Q ss_pred HHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCCh-----hh-------------
Q 014088 165 WALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDD-----MQ------------- 219 (431)
Q Consensus 165 ~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~-----~~------------- 219 (431)
.||.|++....+..+.+.+. |++..|+..+++ .+....++|+.++.|++..-. ..
T Consensus 396 gcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~ 475 (717)
T KOG1048|consen 396 GCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGV 475 (717)
T ss_pred hhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccC
Confidence 99999998776666666554 889999888753 466778899999999985322 00
Q ss_pred -------------hHH----------------------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC----H
Q 014088 220 -------------TQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN----V 260 (431)
Q Consensus 220 -------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~ 260 (431)
.+. +....++..-..+|....++.+.+.++.+|-|++.+. .
T Consensus 476 ~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~ 555 (717)
T KOG1048|consen 476 GPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSE 555 (717)
T ss_pred CCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchh
Confidence 000 0111224443445544447888999999999999842 2
Q ss_pred HHHHHH-HHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC------CHHHHHHH
Q 014088 261 NQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP------DPRIVTVC 333 (431)
Q Consensus 261 ~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~v~~~a 333 (431)
..+..+ .+..+++.+++++..++..|...++.+|.|++.+. .. +.++...+++.|++.|... +.++...+
T Consensus 556 ~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~v 632 (717)
T KOG1048|consen 556 YMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAV 632 (717)
T ss_pred HHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHH
Confidence 333333 46788999999999999999999999999999865 33 3445588999999999643 35888899
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 014088 334 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 334 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~ 397 (431)
+.+|.+++...-. ....+.+.+++++|..+. ...++.+.+.|...+..+|+.
T Consensus 633 c~tl~niv~~~~~------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 633 CHTLNNIVRKNVL------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHhHHHHHHHhHH------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999965443 244556799999999995 456779999999999998874
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=3.7e-16 Score=150.54 Aligned_cols=369 Identities=17% Similarity=0.186 Sum_probs=276.6
Q ss_pred hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088 15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
.+..+.+..+|..+ +.+....++.+|..+.... ..... ..++.+.+...|.++++.+|..+++.+.++..++....
T Consensus 37 ~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 37 RLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred hchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34444466677755 4566678888888877632 22222 44778999999999999999999999999998888777
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088 95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 174 (431)
..+.+.+.++.++..+ .+++..+...|..+|.+++.+.+........+.++.|..++..++..+|..++.++.+++...
T Consensus 113 ~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred HHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 7888899999999999 888999999999999999987644443334566888999998888899999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh-----HHHHHH
Q 014088 175 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEAC 249 (431)
Q Consensus 175 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~ 249 (431)
++......+.|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|.+++.+...+. .....+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 8888888889999999999999988999999999999999 5556778889999999999997663333 223334
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH-HHC-C----ChHHHHhhcC
Q 014088 250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-G----CIKPLCDLLN 323 (431)
Q Consensus 250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-~----~l~~L~~ll~ 323 (431)
...++++...+....... ..++..+.+++.+.+...+..|+.+++.++... +....+ ... + ++..+.....
T Consensus 271 ~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 666777774344332222 336667777888889999999999999998643 555555 322 2 3555555666
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc-chHHHHHHhhc--cHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV-NLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
....+++..++.++.+++........ ... +.....+...+ ... .+..+.+.|-+++|-.+..+|..++.
T Consensus 348 ~~~~~lk~r~l~al~~il~~~~~~~~----~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 348 SGSTELKLRALHALASILTSGTDRQD----NDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 77789999999999999865543110 001 11122222222 233 66777889999999999988887654
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=2.2e-15 Score=145.23 Aligned_cols=357 Identities=17% Similarity=0.174 Sum_probs=268.1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.+...|. ++++.+|..+++.|.+++.++....+.+.+.++++.++..+.+++..+...|+.+|.+++..... .+.++.
T Consensus 81 ~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~ 158 (503)
T PF10508_consen 81 FLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFD 158 (503)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhC
Confidence 4555555 67799999999999999998888788889999999999999999999999999999999987765 456777
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 178 (431)
.+.+..|..++ ...+..+|..+..++.+++...+.. ......|+++.++..++++|.-++..++.++..++.. +...
T Consensus 159 ~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~ 236 (503)
T PF10508_consen 159 SNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGL 236 (503)
T ss_pred cchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHH
Confidence 78888888888 5557788999999999999876333 3444578999999999999999999999999999994 4556
Q ss_pred HHHHHhCcHHHHHHhcCCCCcc-----cH-HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088 179 QAVIEAGVCPRLVELLRHPSPS-----VL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 252 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~-----v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 252 (431)
+.+.+.|+++.|...+.+.+.+ +. ...+...++++...+....... ..++..+.+++.+. +...+..|.-++
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtl 314 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTL 314 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHH
Confidence 7789999999999999663222 22 2344777778775332222111 23555666777777 899999999999
Q ss_pred HHhhcCCHHHHHHH-HHh-CC----HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH---H----HHHHHH---HCCChH
Q 014088 253 SNITAGNVNQIQAI-IEA-GI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN---E----QIKFLV---SQGCIK 316 (431)
Q Consensus 253 ~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~---~----~~~~l~---~~~~l~ 316 (431)
+.++.. .+....+ ... +. +..+......+..++|..++.++.++....+. + ...... ..+...
T Consensus 315 g~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~ 393 (503)
T PF10508_consen 315 GQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS 393 (503)
T ss_pred HHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence 999865 6666666 432 23 44444455566789999999999999655432 1 112211 234444
Q ss_pred -HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 317 -PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 317 -~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
.+..+++.+=++++..++..|..++...+.. +.+....|+++-+.+=....+++.++.=-.++..+.
T Consensus 394 ~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~------------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 394 NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ------------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH------------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 7788888777999999999999999887653 556777777777766555567777666555555555
No 14
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-16 Score=139.05 Aligned_cols=340 Identities=16% Similarity=0.140 Sum_probs=249.0
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC----C---CHHHHHHHHHHHHHhcCCChHHHHHH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----P---TDDVREQAVWALGNVAGDSPKCRDLV 97 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~i 97 (431)
+.+|++.++-.++.++|+|+|.++.+.|..+.+.|+-..++..|+. . +.+....+...|.|..-++.+.+..+
T Consensus 95 ~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~ 174 (604)
T KOG4500|consen 95 TPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQV 174 (604)
T ss_pred CCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence 4567778999999999999999999999999999998888888865 1 24666677789999999999999999
Q ss_pred HHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccC
Q 014088 98 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 98 ~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 173 (431)
.+.|.++.|...+- ..++...-+.......|+..--. -........+.-.+++++.+ -++++.+.+...+...+.+
T Consensus 175 ~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen 254 (604)
T KOG4500|consen 175 ADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN 254 (604)
T ss_pred HhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC
Confidence 99999999988874 22333333444433333332110 01111123444455666653 3677888889999999988
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCC-CCcc-------cHHHHHHHHhHhhcCChhhhHHHhhcC-ChHHHHHHhcccchhhH
Q 014088 174 TNDKIQAVIEAGVCPRLVELLRH-PSPS-------VLIPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSI 244 (431)
Q Consensus 174 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~-------v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v 244 (431)
+..+.. +.+.|.+..++++++. ++.. ....++..+.-+..+.+ ..+.+...+ +++.+..++.+. +...
T Consensus 255 d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l 331 (604)
T KOG4500|consen 255 DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNL 331 (604)
T ss_pred cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhH
Confidence 765544 7778999999998866 2222 22334444444444444 455566555 899999999999 9999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
.-.+..+++|+++. ++.+.++++.+++..|++++.. ++.+++..++.+|.|+...- .....+...|+.+.+.
T Consensus 332 ~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL 408 (604)
T KOG4500|consen 332 ITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAIL 408 (604)
T ss_pred HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHH
Confidence 99999999999998 5667888999999999999965 36788899999999998754 4566778999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCH
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 381 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 381 (431)
..++...|.+...-+..++-+....+.. ..+.......+++|++...+++-
T Consensus 409 ~~lk~~~ppv~fkllgTlrM~~d~qe~~-----------a~eL~kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 409 LQLKLASPPVTFKLLGTLRMIRDSQEYI-----------ACELAKNPELFEKLVDWSKSPDF 459 (604)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhchHHH-----------HHHHhcCHHHHHHHHHhhhCCcc
Confidence 9999999999998888888665444322 24445555567777777666653
No 15
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-15 Score=144.74 Aligned_cols=349 Identities=18% Similarity=0.232 Sum_probs=271.9
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHH
Q 014088 16 FVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 16 ~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
.+.|.|+.+|....+.+++..|+++|.+++.--|+....+++.++||.|+.-|.. ...++.++++.+|..|++..+.
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~-- 288 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK-- 288 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--
Confidence 3445566688877789999999999999999889999999999999999996665 8899999999999999987653
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc--
Q 014088 95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-- 172 (431)
Q Consensus 95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-- 172 (431)
.+.++|++...+..| .--+..+++.|+.+..|+|..-+..........+|.|..+|...+.+..+.++-++..++.
T Consensus 289 -AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 289 -AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred -HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 788999999999999 6667889999999999999998666677778899999999999999999999999999875
Q ss_pred -CChHHHHHHHHhCcHHHHHHhcCCC----CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-------
Q 014088 173 -GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY------- 240 (431)
Q Consensus 173 -~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~------- 240 (431)
+.+++.+.+...+++....+++.-. +..+..-.++.+..++.+.+-....+...++...|..+|....
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~ 446 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASL 446 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccc
Confidence 4566777888889999999998653 3345666778888888887767777777777777777773210
Q ss_pred ------hhhHHHHHHH----------------------------------------------------HHH---------
Q 014088 241 ------KKSIKKEACW----------------------------------------------------TIS--------- 253 (431)
Q Consensus 241 ------~~~v~~~a~~----------------------------------------------------~L~--------- 253 (431)
.+.-..+... .+.
T Consensus 447 ~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~ 526 (1051)
T KOG0168|consen 447 HELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTS 526 (1051)
T ss_pred ccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccc
Confidence 0000000000 001
Q ss_pred -------------HhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHH
Q 014088 254 -------------NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPL 318 (431)
Q Consensus 254 -------------nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L 318 (431)
.+....|+..+.++. .++|.|++++.+. ++.||..++.+|..+....+.+.++.++. ..+-..+
T Consensus 527 ~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~l 605 (1051)
T KOG0168|consen 527 RKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHL 605 (1051)
T ss_pred hhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHH
Confidence 011112233333333 3789999999876 99999999999999999888888777664 5666778
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088 319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380 (431)
Q Consensus 319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 380 (431)
-.++.+++..+..-|+....-+++.-.. .|...|.+.|.+..+.+|....+
T Consensus 606 AG~lsskD~~vlVgALQvAEiLmeKlpd-----------~F~~~F~REGV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 606 AGMLSSKDLTVLVGALQVAEILMEKLPD-----------TFSPSFRREGVFHAVKQLSVDSN 656 (1051)
T ss_pred HhhhhcCCCeeEeehHHHHHHHHHHhHH-----------HhhhhHhhhhHHHHHHHHhccCC
Confidence 8899999999988888888888775533 27888999999999999976443
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.7e-15 Score=140.59 Aligned_cols=372 Identities=17% Similarity=0.204 Sum_probs=243.5
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 96 (431)
|.++| .+++...++.|..+|.+++.++.+.-+.-.. .-.+|.++++.+++++.+|..|+.++..+....+. ..
T Consensus 133 L~~~L-~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al 209 (885)
T KOG2023|consen 133 LCELL-DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--AL 209 (885)
T ss_pred HHHHh-cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HH
Confidence 33355 4666789999999999999987665443211 13689999999999999999999999988754432 12
Q ss_pred HHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088 97 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 97 i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
... ..+++.+..+- .+.++++|.+.|.++..|..-.+........+++..+++..++.|.+|.-.||.....++..+-
T Consensus 210 ~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi 288 (885)
T KOG2023|consen 210 YVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI 288 (885)
T ss_pred HHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC
Confidence 221 12344444444 7889999999999999999888777777788888888888888888888888888877776431
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 014088 176 DKIQA--------------------------------------------------------------------------- 180 (431)
Q Consensus 176 ~~~~~--------------------------------------------------------------------------- 180 (431)
....
T Consensus 289 -~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~ 367 (885)
T KOG2023|consen 289 -CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS 367 (885)
T ss_pred -cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence 1010
Q ss_pred -----------------HHHhCcHHHH----HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh--cCChHHHHHHhc
Q 014088 181 -----------------VIEAGVCPRL----VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQALPCLLDLLT 237 (431)
Q Consensus 181 -----------------~~~~~~i~~L----~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~lL~ 237 (431)
+....+++.+ -..|.++++.+++.++-+++.++.+. .+-++. ..++|.++++|.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHHHHHHHhc
Confidence 0011122222 22233455556666666666666542 111111 135788899999
Q ss_pred ccchhhHHHHHHHHHHHhhcC--CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 014088 238 QNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 315 (431)
Q Consensus 238 ~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 315 (431)
+. .+-||.-.||+|++.+.. +.+ .+.... .++..+++.+-+++.+|++.|+.++..+-....++...++.. ++
T Consensus 445 DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL 519 (885)
T KOG2023|consen 445 DK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--IL 519 (885)
T ss_pred cC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HH
Confidence 88 999999999999998861 112 222222 245667777778899999999999999988776565555433 45
Q ss_pred HHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-------------
Q 014088 316 KPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD------------- 379 (431)
Q Consensus 316 ~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~------------- 379 (431)
..|...++ .++-.+..-|.++|..-+...-... .|..++. --.+++...|.+++
T Consensus 520 ~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~---------~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsi 589 (885)
T KOG2023|consen 520 DQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKP---------AYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSI 589 (885)
T ss_pred HHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcH---------HHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 55555554 2343444444444443331111110 0222222 11222222222111
Q ss_pred -----------CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 014088 380 -----------NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFG 415 (431)
Q Consensus 380 -----------~~~v~~~a~~~l~~~~~~e~~~~~~~~~~~~~~~~~ 415 (431)
-+.|+.++-++++++.+..-+.+.+|++++|.+||-
T Consensus 590 a~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 590 ASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI 636 (885)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence 378899999999999999999999999999999994
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.8e-14 Score=121.74 Aligned_cols=321 Identities=14% Similarity=0.144 Sum_probs=250.7
Q ss_pred hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHh
Q 014088 9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNV 86 (431)
Q Consensus 9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l 86 (431)
+.|..|.++- +.. |.++++..+...++.+|..+....++ +.+..++..++++|.. ++.++....+.++..-
T Consensus 102 ~~ga~~~~it--~~~-la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A 174 (461)
T KOG4199|consen 102 KNGAHDALIT--LLE-LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA 174 (461)
T ss_pred cCCCcchhhh--HHH-HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4466666665 222 46778888889999999998876554 5567889999998865 6678888888888888
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC----------ChhhHhhhHHHHHHhhcCC-
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP----------LFEQTRPALPALERLIHSN- 155 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~i~~L~~lL~~~- 155 (431)
|....-+|+.+++.++++.+...|.+.....+.+.++|++..|..++..+ +.....+++..|.+.++..
T Consensus 175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~ 254 (461)
T KOG4199|consen 175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI 254 (461)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC
Confidence 88788889999999999999988876666689999999999998765221 1222355677888888754
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCccc---HHHHHHHHhHhhcCChhhhHHHhhcCChHH
Q 014088 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSV---LIPALRTVGNIVTGDDMQTQCIINHQALPC 231 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 231 (431)
+|.+...++.+|..++-.+ +..+.+.+.|++..+++++.+ ++... ...++..|..++- ++.....+++.|+.+.
T Consensus 255 dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDK 332 (461)
T ss_pred CccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHH
Confidence 7899999999999999775 456779999999999999987 33333 4567888888875 4557778899999999
Q ss_pred HHHHhc-ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088 232 LLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKF 308 (431)
Q Consensus 232 L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~ 308 (431)
++.++. +..++.+..+++.+++-++..+|+.....++.|.-...++.++.. ...++++|++.+.|+...+ .+++..
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~ 411 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTI 411 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccch
Confidence 988773 334789999999999999998899999999999988888888764 6789999999999999875 366666
Q ss_pred HHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088 309 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340 (431)
Q Consensus 309 l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l 340 (431)
++.. +++.|+..-+..++.....+-.+|..+
T Consensus 412 ~l~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 412 LLAN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 5554 478888777777776666666666554
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=2.5e-15 Score=149.61 Aligned_cols=334 Identities=19% Similarity=0.178 Sum_probs=256.2
Q ss_pred ccchhhhhhhhhhhhHHHHHhhhccCC--ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH----------hhCC
Q 014088 3 CFDLRFECILISLFVDQFFFHCFFSCC--FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR----------LLSS 70 (431)
Q Consensus 3 c~~~~~~~g~~~~~v~~~lv~~L~~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~----------lL~~ 70 (431)
|..+| ..|-+|.+++ +|...+ +.+.+..|-.+|.||....++.+..-.+..+++.|-+ .++.
T Consensus 228 CaamR-~SgCLpLLvQ-----ilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa 301 (2195)
T KOG2122|consen 228 CAAMR-RSGCLPLLVQ-----ILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA 301 (2195)
T ss_pred hHHHH-hccchHHHHH-----HhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554 5688888888 554332 3578889999999999877665544444444444332 2222
Q ss_pred -----CC--HHHHH-HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-----------ccchhHHHHHHHHHHHhhc
Q 014088 71 -----PT--DDVRE-QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-----------HAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 71 -----~~--~~v~~-~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-----------~~~~~~~~~a~~~L~~l~~ 131 (431)
.+ ..-+. .|+.+|-.++.+ .+.|..+-+.|++.++-+++.- .....+|+++..+|-||..
T Consensus 302 r~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF 380 (2195)
T KOG2122|consen 302 RGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF 380 (2195)
T ss_pred cCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc
Confidence 11 22233 455666666654 5689999999999999998741 1246799999999999998
Q ss_pred CCCCCC--hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHh-cCCCCcccHHHHHH
Q 014088 132 GKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALR 207 (431)
Q Consensus 132 ~~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~ 207 (431)
++...+ .....+++..++..|.+...++..-...+|.||+=..+. ....+.+.|-+..|+.. +...+.......+.
T Consensus 381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS 460 (2195)
T KOG2122|consen 381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS 460 (2195)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence 873333 233489999999999999889999999999999854443 34445566777777776 56677788999999
Q ss_pred HHhHhhcCChhhhHHHh-hcCChHHHHHHhcccc---hhhHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHc
Q 014088 208 TVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLL 280 (431)
Q Consensus 208 ~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~ 280 (431)
+||||+.+..++...+- -.|.+..|+.+|.... ...+.+.|..+|.|++. .+.++++.+.+++++..|++.|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 99999988766655553 4589999999996541 35677788888888775 57888999999999999999999
Q ss_pred cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 281 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
+.+..+..++|.+|.||.... ++..++|.+.|.+..|.+++++++..+..-+..+|.|++.+-
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999998865 466788899999999999999999999999999999998765
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.3e-14 Score=124.50 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=229.5
Q ss_pred hhhc-cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC---------h
Q 014088 23 HCFF-SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS---------P 91 (431)
Q Consensus 23 ~~L~-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~---------~ 91 (431)
.+|. ++++.++-...+.++..-|..++.+|+.+++.++++.+.+.|.. +...+.+.+.|++..+..++ .
T Consensus 152 ~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah 231 (461)
T KOG4199|consen 152 KLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAH 231 (461)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhh
Confidence 3553 45567888999999999999899999999999999999987765 44568888999999987654 2
Q ss_pred HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-Ch---HHHHHHHHHH
Q 014088 92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWAL 167 (431)
Q Consensus 92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~---~v~~~a~~~L 167 (431)
+....+.+.|++..|++.+....++.+...++.+|..++-.++........|++..+++++.+. +. +..+.++..|
T Consensus 232 ~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 232 GHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 4456778888899999999877789999999999999998876666777799999999999874 33 3557788888
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcC--CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSI 244 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v 244 (431)
..++-+++.+ ..+++.|+.+.++.++. .++|.+...++.+++-++-..+.....+++.|+-...++.|+.. ....+
T Consensus 312 ralAG~DsvK-s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~v 390 (461)
T KOG4199|consen 312 RALAGSDSVK-STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQV 390 (461)
T ss_pred HHHhCCCchH-HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHH
Confidence 8888776544 66899999999999873 36788999999999999998899999999999999999999644 35789
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
+++|||++.|+...+.+++..++.. .++.|+......++.....|-.+|..+-.+
T Consensus 391 Qrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 391 QRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9999999999999878888777776 578899888888888888888888888653
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=3.1e-15 Score=142.62 Aligned_cols=327 Identities=20% Similarity=0.207 Sum_probs=243.5
Q ss_pred hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 014088 8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALG 84 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~ 84 (431)
.+.|.+|.+|. |..++..++|.+|+++|.|++.++.. ++-.+.+.++|+.++.+|.. .+.++++.+..+|+
T Consensus 272 rqlggI~kLv~------Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LW 345 (717)
T KOG1048|consen 272 RQLGGIPKLVA------LLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILW 345 (717)
T ss_pred HHhccHHHHHH------HhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHh
Confidence 35589999999 77789999999999999999987655 88889999999999999987 89999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhcc-------------ccchhHHHHHHHHHHHhhcCCCC--CChhhHhhhHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNE-------------HAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALE 149 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~-------------~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~ 149 (431)
||++.+ ..+..++ ...+..|...... -.+.++..++..||.|++..... ..+-...|++..|+
T Consensus 346 NLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 346 NLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL 423 (717)
T ss_pred cccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence 999873 3333333 3345555554421 11367888999999999986522 23334588999888
Q ss_pred Hhhc------CCChHHHHHHHHHHHHhccCCh-----HHH--------------------------HH------------
Q 014088 150 RLIH------SNDDEVLTDACWALSYLSDGTN-----DKI--------------------------QA------------ 180 (431)
Q Consensus 150 ~lL~------~~~~~v~~~a~~~L~~l~~~~~-----~~~--------------------------~~------------ 180 (431)
..++ ..+.+..+++...+.|++..-. ... +.
T Consensus 424 ~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe 503 (717)
T KOG1048|consen 424 FSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPE 503 (717)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcc
Confidence 8776 2366778888889999874221 000 00
Q ss_pred ----------HHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCCh----hhhHHH-hhcCChHHHHHHhcccchhhH
Q 014088 181 ----------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDD----MQTQCI-INHQALPCLLDLLTQNYKKSI 244 (431)
Q Consensus 181 ----------~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~----~~~~~~-~~~~~l~~L~~lL~~~~~~~v 244 (431)
+....++..-..++ ...++.+.+.++.+|-|++.+.. .....+ ...++++.++++|..+ ++.+
T Consensus 504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~v 582 (717)
T KOG1048|consen 504 RATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDV 582 (717)
T ss_pred cccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchH
Confidence 00111222212223 23456788999999999998753 222333 4779999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC------CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 318 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 318 (431)
...++.+|.|++.+ ... +.++..++++.|++.|... +.++...++.+|.++.... ....+-+.+.+.+++|
T Consensus 583 v~s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 583 VRSAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLEIKGIPKL 659 (717)
T ss_pred HHHHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHhccChHHH
Confidence 99999999999986 443 4455578999999999765 3678889999999998754 5788888999999999
Q ss_pred HhhcCCC-CHHHHHHHHHHHHHHHHhhhh
Q 014088 319 CDLLNCP-DPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 319 ~~ll~~~-~~~v~~~al~~L~~l~~~~~~ 346 (431)
+.+.++. +++..+.+...|..|-.+.+-
T Consensus 660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 660 RLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 568888888888887776653
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.7e-13 Score=121.89 Aligned_cols=360 Identities=16% Similarity=0.114 Sum_probs=270.9
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 85 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 85 (431)
.+.|-......+..+||+.|..++ .++-......|.+++- -.+++..+.+.|+++.|+++....+++++...+..+.|
T Consensus 294 ~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfN 371 (791)
T KOG1222|consen 294 ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFN 371 (791)
T ss_pred hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 344444555566667778888665 5777888888888886 57888999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHH
Q 014088 86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDAC 164 (431)
Q Consensus 86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~ 164 (431)
++.+.. .|..++..|.+|.+..++.++. -...|+..+..++.+.....+......++.+.+.+- ..+.++-...+
T Consensus 372 lSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~li 447 (791)
T KOG1222|consen 372 LSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI 447 (791)
T ss_pred cccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 998764 6888899999999999995332 235578888999888766666677888998887654 44566655555
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088 165 WALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 243 (431)
Q Consensus 165 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 243 (431)
..-.|++-+.. ..+.+++..++..|+..- ...++ .....+.|++.+.......+++ .+..|...++...++.
T Consensus 448 a~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 448 ALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSES 520 (791)
T ss_pred HHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHH
Confidence 55567776543 335566666677766543 33332 2456677888776544444543 5777777787765678
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088 244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321 (431)
Q Consensus 244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 321 (431)
...+++.+++|+...+-+..+.+.+..++|.+-..|..+ ..++....+-+++.++... .....+...++++.++++
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--DCARLLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--HHHHHhCccccHHHHHHH
Confidence 889999999999987778788888899999999999876 5678888888888888754 566777788999999999
Q ss_pred cCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088 322 LNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392 (431)
Q Consensus 322 l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 392 (431)
++. .+.++....+..+..+++.... -+-++++...-.-+.+|+++.|.++|+-+...|.
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHDkN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALD 659 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHH
Confidence 974 4667777888888888877322 1456777777777999999999999876655443
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=5.7e-15 Score=147.12 Aligned_cols=371 Identities=20% Similarity=0.179 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhcCCChHH---HHHHHHcCChHHH-
Q 014088 34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPL- 106 (431)
Q Consensus 34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~l- 106 (431)
++.-.+.+..++. +++.+..+...|.++.|+++|.. .+.+.+..+-.+|.||....++. |..+.....++.+
T Consensus 211 ~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 211 EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4555666777776 78888899999999999999976 35788999999999998655432 2222211122211
Q ss_pred --HHHh----c-cc---cchhHH---HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC---------C---ChHHHH
Q 014088 107 --LAQF----N-EH---AKLSML---RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------N---DDEVLT 161 (431)
Q Consensus 107 --~~~l----~-~~---~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~---------~---~~~v~~ 161 (431)
+..+ . .. .+.... ..|+.+|..++.+.+.......-|++..+.+++.- + ...+|.
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr 369 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR 369 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 1111 1 11 122222 34555666666665555555567888888777651 1 246899
Q ss_pred HHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhccc
Q 014088 162 DACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN 239 (431)
Q Consensus 162 ~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~ 239 (431)
++..+|.||..++..+...++. .|++..++..|.....++......+|.||+=..+...+.++ +.|-+..|...-...
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~ 449 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN 449 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh
Confidence 9999999999877665555554 48999999999998889999999999999977776666665 557777777765444
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccC----CHhHHHHHHHHHHHhcCCC--CHHHHHHHHHC
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA----EFEIKKEAAWAISNATSGG--SNEQIKFLVSQ 312 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~ 312 (431)
..+...+..+.+|+||+.++.++...+.. .|.+..|+.+|... ...+.+.+-.+|.|....- ..++++.+.+.
T Consensus 450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 36677888899999999987777777665 78999999999765 4567788888888775422 34788888899
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088 313 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392 (431)
Q Consensus 313 ~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 392 (431)
+++..|++.|++..--++.+++++|+||...+..+ -.+|.+.|++.-|..|.++.+..+.+-+..+|.
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D------------Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALr 597 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED------------QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALR 597 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH------------HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 99999999999999899999999999999877665 456889999999999999999999999999998
Q ss_pred HhcCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 014088 393 TYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSG 426 (431)
Q Consensus 393 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (431)
++.... | +-|++..|-..|--||++
T Consensus 598 NLln~R------P---Akq~~~~~~~~g~svgsL 622 (2195)
T KOG2122|consen 598 NLLNFR------P---AKQASHRLMSPGSSVGSL 622 (2195)
T ss_pred HHhcCC------c---hhhhhhcccCccccccch
Confidence 887654 1 125555555555555543
No 23
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=1.9e-14 Score=127.51 Aligned_cols=251 Identities=15% Similarity=0.137 Sum_probs=195.9
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
|++.| .+++..+|..+++.|..+-. ..+++.+..+++++++.+|..++++|+.+-..... ..
T Consensus 28 L~~~L-~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~ 89 (280)
T PRK09687 28 LFRLL-DDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QD 89 (280)
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hH
Confidence 44455 56778999999999998764 24678888899999999999999999998643211 11
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
..++.|..++.+++++.++..++.+|++++...... ....++.+...+.++++.||..++++|+.+.. +
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~----- 158 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E----- 158 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-----
Confidence 246677777668889999999999999997543211 12356667778888899999999999976642 1
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
..++.|+.++.++++.++..++.+|+.+...++ ..++.|+..+.+. +..||..|+++|+.+-. +
T Consensus 159 ----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 159 ----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC--h
Confidence 356889999999999999999999999943333 3467799999988 99999999999998632 2
Q ss_pred HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 014088 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN 339 (431)
Q Consensus 261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~ 339 (431)
.+++.|++.+.+++ ++..++.+|+++-.. ..++.|.++++ .+|..++..+.++|..
T Consensus 223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 223 ---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37889999998876 677899999998542 25888888886 7799999999888753
No 24
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=4.2e-14 Score=125.31 Aligned_cols=255 Identities=16% Similarity=0.128 Sum_probs=196.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
--++.|..+|.+++..+|..++++|..+-. + ..++.+..++ .++++.+|..++++|+.+-.....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--Q---------DVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--c---------hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence 357889999999999999999999998742 1 1355666766 788999999999999998654211
Q ss_pred hhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 139 EQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 139 ~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
....++.|..+ ++++++.|+..++.+|+++....... ...+++.+...+.++++.||..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~ 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence 23577888777 67889999999999999986543211 11345667778888899999999999987642 1
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
..++.|+.++.++ ++.+|..|+++|+++...++. .++.|+..+.+.+..||..|+++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578899999988 999999999999999544443 567789999999999999999999986
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 377 (431)
-. ..+++.|++.++.++ ++..++.+|..+-. ...++.|..+++
T Consensus 220 ~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------------------~~a~p~L~~l~~ 262 (280)
T PRK09687 220 KD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------------------KTLLPVLDTLLY 262 (280)
T ss_pred CC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------------------HhHHHHHHHHHh
Confidence 32 126888889988765 55566677665421 124667777765
Q ss_pred -CCCHHHHHHHHHHHHH
Q 014088 378 -HDNTEIYEKAVKILET 393 (431)
Q Consensus 378 -~~~~~v~~~a~~~l~~ 393 (431)
+++++++..|.+.|..
T Consensus 263 ~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 263 KFDDNEIITKAIDKLKR 279 (280)
T ss_pred hCCChhHHHHHHHHHhc
Confidence 8899999999998864
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.1e-13 Score=132.18 Aligned_cols=319 Identities=17% Similarity=0.174 Sum_probs=227.0
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC---hHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCRD 95 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~ 95 (431)
.++++. +|+++..|+.|+++|..+...-...-. .+- .+.+.+.+.+.+++..+|..++++++.++... +..+.
T Consensus 122 ~L~q~~-~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~ 198 (1075)
T KOG2171|consen 122 FLFQST-KSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVD 198 (1075)
T ss_pred HHHHHh-cCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHH
Confidence 334454 478899999999999998763222111 111 24555566666766669999999999988543 22233
Q ss_pred HHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHh
Q 014088 96 LVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 170 (431)
Q Consensus 96 ~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l 170 (431)
.+.. .+|.++..+. ...+.+....++.+|-.++...+..-......++...+.+.++. +..+|..|+.++..+
T Consensus 199 ~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~ 276 (1075)
T KOG2171|consen 199 KFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSL 276 (1075)
T ss_pred HHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 3322 5666666664 34456667788888888888766555556677777777777765 678899999888877
Q ss_pred ccCChHHHHH---------------------------------------------HHH-----h-------CcHHHHHHh
Q 014088 171 SDGTNDKIQA---------------------------------------------VIE-----A-------GVCPRLVEL 193 (431)
Q Consensus 171 ~~~~~~~~~~---------------------------------------------~~~-----~-------~~i~~L~~l 193 (431)
++..+...+. .++ . -+++.+-.+
T Consensus 277 ~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~ 356 (1075)
T KOG2171|consen 277 SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAM 356 (1075)
T ss_pred HHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHH
Confidence 7653322221 000 0 123444455
Q ss_pred cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088 194 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 273 (431)
Q Consensus 194 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 273 (431)
+.+.++.-|..++.+|+.++.+........++ .+++.+++.|+++ ++.||..|+.+++.++..-....+.-....+++
T Consensus 357 l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~ 434 (1075)
T KOG2171|consen 357 LQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP 434 (1075)
T ss_pred hcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence 67778888999999999999998877776555 7889999999999 999999999999999986455555555666888
Q ss_pred HHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 274 PLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 274 ~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.|+..+.+. +++|+..|+.++-|+.....++.....+ .++++ .+..+++++.+.+++.++.+|..++...+.
T Consensus 435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 999998876 7899999999999999877655443322 23566 445566778899999999999999877654
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.64 E-value=8.5e-14 Score=120.49 Aligned_cols=239 Identities=19% Similarity=0.205 Sum_probs=186.8
Q ss_pred hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088 140 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 218 (431)
...+-++.|+.+|+. .++.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 335678899999985 58999999999999987655 4556788889999999999999999999999999999886553
Q ss_pred hhHHHhhcCChHHHHHHh-cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 219 QTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
... ++ ..++.+.+.. ..+.+..++..++.+|.|++.. .+. +.++. +.++.++.++..++..+|..++++|.|+
T Consensus 88 ~~~--Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 QEQ--IK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHH--HH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 332 23 2455555544 3333689999999999999875 332 33332 3799999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhhcC--CCCCcchHHHHHHhhc-cHHHHH
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMG--NTGGVNLFAQAIDDAE-GLEKIE 373 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~-~~~~l~ 373 (431)
+.+. ...+.++..+++..++.+++.. +.++...++..+.|+...-.+..... .....+.....+.+.+ .-+++.
T Consensus 162 S~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 162 SENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred ccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 9854 7889999999999999999865 67888899999999976555442211 1223344557777777 778899
Q ss_pred HhhcCCCHHHHHHH
Q 014088 374 NLQSHDNTEIYEKA 387 (431)
Q Consensus 374 ~l~~~~~~~v~~~a 387 (431)
.|.+|++++|+.++
T Consensus 240 ~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 240 ALANHPDPEVKEQV 253 (254)
T ss_pred HHHcCCCHHHhhhc
Confidence 99999999999864
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.61 E-value=1.9e-13 Score=118.28 Aligned_cols=196 Identities=19% Similarity=0.189 Sum_probs=161.5
Q ss_pred hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088 8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 87 (431)
.+.+-+..++. +|..+.+|.+++.++.++++.+. .+..++.+.+.|+++.+..+|.++++.++..|+++|.|++
T Consensus 9 l~~~~l~~Ll~-----lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 9 LEAQELQKLLC-----LLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred cCHHHHHHHHH-----HHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 44455555555 88888899999999999999876 6899999999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088 88 GDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA 166 (431)
Q Consensus 88 ~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 166 (431)
...+ .+..+.. .++.+++..... -+.+++..++.+|.+|+..+..... ....+|.++++|..++..++..++++
T Consensus 83 ~~~e-n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 83 VNDE-NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred CChh-hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCChHHHHHHHHH
Confidence 7664 3444433 577777765443 4788999999999999877543333 35689999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcC
Q 014088 167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~ 215 (431)
|.|++.++.. .+.++..+++..++.++... +.++...++..+.|+..+
T Consensus 158 L~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 158 LVNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999988754 45577889999999999875 678899999999999754
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.60 E-value=7.3e-13 Score=136.88 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=210.9
Q ss_pred hhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 014088 23 HCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 102 (431)
Q Consensus 23 ~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 102 (431)
+.| .++++.+|..|+..|..+.. ...++.|...|+++++.+|..|+.+|..+....+ .
T Consensus 628 ~~L-~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~ 685 (897)
T PRK13800 628 PYL-ADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------P 685 (897)
T ss_pred HHh-cCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------c
Confidence 355 57789999999999998753 2478999999999999999999999988853221 1
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
.+.+...| .++++.++..++.+|..+... -...++..|.++++.+|..++.+|..+..
T Consensus 686 ~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~---------- 743 (897)
T PRK13800 686 APALRDHL-GSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDD---------- 743 (897)
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccC----------
Confidence 24566777 678999999999999887532 12356788999999999999999987521
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
.+.|...+.++++.||..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|+++... +.
T Consensus 744 ----~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~-~~- 807 (897)
T PRK13800 744 ----VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAELGCP-PD- 807 (897)
T ss_pred ----cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCc-ch-
Confidence 1345678899999999999999998864322 2367888999988 899999999999998543 11
Q ss_pred HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
.++.+...+.++++.||..|+.+|+.+... ..++.|..+++++++.++..+..+|..+ .
T Consensus 808 --------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~ 866 (897)
T PRK13800 808 --------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRW-P 866 (897)
T ss_pred --------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhcc-C
Confidence 235688889999999999999999987431 2468899999999999999999999986 1
Q ss_pred hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.. ....+.|...+++++++|+..|..+|+.
T Consensus 867 ~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 867 GD---------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 11 1124557788889999999999998863
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.1e-12 Score=113.28 Aligned_cols=320 Identities=15% Similarity=0.152 Sum_probs=245.4
Q ss_pred hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+.|++..+++ |..+.+++++..++..+.|++. ....|..+++.|.+|.+..+|.+... ...|+..+..++.
T Consensus 343 ~~~iveKL~k------lfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 343 QNGIVEKLLK------LFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC 413 (791)
T ss_pred hccHHHHHHH------hcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc
Confidence 5678888888 7778899999999999999998 56788999999999999999976432 2346677788876
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWAL 167 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L 167 (431)
+.. .+..+....+++.+++.+....+.++-........|+|.+....+.......+..|.+. +++.++-+ ...+
T Consensus 414 dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~v 488 (791)
T KOG1222|consen 414 DDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVV 488 (791)
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHH
Confidence 553 57788888899999988877778888777788888999887666666666777777654 55566543 3467
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIK 245 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~ 245 (431)
.|++.+.......+++ .+..|...+.. ++.+....++++++|+....-...+.+-+.+++|.+-..|.... ..++.
T Consensus 489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLv 566 (791)
T KOG1222|consen 489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLV 566 (791)
T ss_pred HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhh
Confidence 8888887655555554 45667777655 45667888999999998765556666778899999999887552 35677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhc
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLL 322 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll 322 (431)
....-+++.+++. ......+...++++.++++|+.. +.+.....+.++..+..+. ..+..+. +...-..+++++
T Consensus 567 L~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 567 LQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred hHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHH
Confidence 7777788888775 45556666789999999999864 7788888889998888763 3444444 456777899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 323 NCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 323 ~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
+.++.++++.+-.+|--+...+...
T Consensus 644 HDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 644 HDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred hcccHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999989988888776654
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.7e-11 Score=121.60 Aligned_cols=318 Identities=20% Similarity=0.227 Sum_probs=221.9
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCCh
Q 014088 19 QFFFHCFFSCCFGAVQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLS----SPTDDVREQAVWALGNVAGDSP 91 (431)
Q Consensus 19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~ 91 (431)
+.|.+++.+.+++ +|..|+++++..+... ....+.+. ..+|.++..+. .++......++.+|..++...+
T Consensus 162 ~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred HHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 3566788877776 9999999999887644 33344444 46776666654 4667777888888888886655
Q ss_pred HH-HHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCC---------------------------------
Q 014088 92 KC-RDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQP--------------------------------- 136 (431)
Q Consensus 92 ~~-~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~--------------------------------- 136 (431)
.. +..+.+ ++...+.+.. ++-++.+|..|+.+|..+++.-|..
T Consensus 239 k~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 239 KLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred HHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 43 222222 3333333332 2235667777777666665541100
Q ss_pred -------------------------ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 137 -------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 137 -------------------------~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
.......+++.+-.++.+.+..-|..++.+|+.++.+..+.+..... .+++.++
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl 395 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVL 395 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHH
Confidence 00111223344455667788888999999999999998877664443 6788888
Q ss_pred HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhC
Q 014088 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAG 270 (431)
Q Consensus 192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~ 270 (431)
+.|.++.+.||..|+.+++.++..-....+......+++.|+..+.+..+++++..|+.++-|++... .+.....++ +
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~ 474 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-G 474 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-H
Confidence 89999999999999999999998766666667777888999999998878899999999999999843 344454444 3
Q ss_pred CHH-HHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHHhhh
Q 014088 271 IIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 271 ~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~~v~~~al~~L~~l~~~~~ 345 (431)
++. .+..+++++.+.+++.++.+|+..+........+++.. +++.|...+...+ ..++-++++++.-+...-.
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 666 44445566799999999999999998776666666555 7888888887543 3566666677666554433
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.53 E-value=2.8e-11 Score=111.69 Aligned_cols=322 Identities=14% Similarity=0.173 Sum_probs=233.7
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHH-----cCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 59 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLS-----NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 59 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-----~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
..+..++.+++. ..+++.+.++..+.-+....+.....+.+ .....+++.+| ..+|.-+...++.+|..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 567788888876 67888999999999998877665455554 35677888888 667888999999999999876
Q ss_pred CCCCChh-hHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHH
Q 014088 133 KPQPLFE-QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 208 (431)
Q Consensus 133 ~~~~~~~-~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~ 208 (431)
.+..... ....+++.+...++++ +...+..++.++..+...++-+ ..+.+.++++.|+.+|+.. .......++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 5332221 2233555666777654 4677788889999998887644 5577778999999999763 45778889999
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC------HHHHHHHHHhCCHHHHHHHHccC
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA 282 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~ 282 (431)
++-++...+ ........++++.++++++....+++.+-++.++.|+...+ ......+++.|+.+.+-.+-..+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999998655 44455677999999999998878999999999999999742 23445667776655444444333
Q ss_pred --CHhHHHHH-------HHHHHHhcC------------------CCC----HHHHHHHHHCC--ChHHHHhhcC-CCCHH
Q 014088 283 --EFEIKKEA-------AWAISNATS------------------GGS----NEQIKFLVSQG--CIKPLCDLLN-CPDPR 328 (431)
Q Consensus 283 --~~~v~~~a-------~~aL~~l~~------------------~~~----~~~~~~l~~~~--~l~~L~~ll~-~~~~~ 328 (431)
|+++.... -..+..++. +.+ .++...|.+.+ ++..|..+++ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 55543221 111111111 101 24556666554 4788899884 56788
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
+...|+.=++.+++..+. .+..+.+.|+.+++.+|++|+|++|+..|..+++.+.
T Consensus 370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888899999999987644 3677889999999999999999999999999988764
No 32
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.53 E-value=7e-12 Score=117.14 Aligned_cols=372 Identities=15% Similarity=0.099 Sum_probs=251.1
Q ss_pred hhhhhhhhhhhHHHHHhhhccCC--ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHH
Q 014088 7 RFECILISLFVDQFFFHCFFSCC--FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWAL 83 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L 83 (431)
.++.|.+|.+.- |.+.+ .++.+.+...++.....+.......+.+.+.++.++++|.+++ ..+++.+++++
T Consensus 47 ~ik~GAv~~Ll~------L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~l 120 (678)
T KOG1293|consen 47 NIKLGAVELLLA------LLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCL 120 (678)
T ss_pred hhhhcchHHHHh------hccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHH
Confidence 567888888888 54443 3567767777777787777888889999999999999999988 89999999999
Q ss_pred HHhcCCChH--HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHH
Q 014088 84 GNVAGDSPK--CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 161 (431)
Q Consensus 84 ~~l~~~~~~--~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 161 (431)
.++....+. .........+++.+..++ ..+.....+.-+....+++............+....+.-++...+...|.
T Consensus 121 R~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rl 199 (678)
T KOG1293|consen 121 RTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRL 199 (678)
T ss_pred HHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHH
Confidence 999865432 111122222344444444 32444455555666666666543333334467777777777777889999
Q ss_pred HHHHHHH---HhccCChHHHH----HHHHhCcHH--HHHHhcCCCCcccHHHHHHHHhHhhcCChh--------------
Q 014088 162 DACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLRHPSPSVLIPALRTVGNIVTGDDM-------------- 218 (431)
Q Consensus 162 ~a~~~L~---~l~~~~~~~~~----~~~~~~~i~--~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-------------- 218 (431)
.|+.+++ ++..+++.... .+.+.|+.+ .+.+++++++.+.+..++.++.++...+..
T Consensus 200 aaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmg 279 (678)
T KOG1293|consen 200 AALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMG 279 (678)
T ss_pred HHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCc
Confidence 9999999 77766654332 234446655 345566666666666666666666543300
Q ss_pred -------------------------------------hhHHHhhcCChHHHHHHhc------------------------
Q 014088 219 -------------------------------------QTQCIINHQALPCLLDLLT------------------------ 237 (431)
Q Consensus 219 -------------------------------------~~~~~~~~~~l~~L~~lL~------------------------ 237 (431)
......+....+.+.+++.
T Consensus 280 d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~ 359 (678)
T KOG1293|consen 280 DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILN 359 (678)
T ss_pred hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhh
Confidence 0000011111222222221
Q ss_pred ----------------------------ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHH
Q 014088 238 ----------------------------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 289 (431)
Q Consensus 238 ----------------------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 289 (431)
.. +...+..|+.++-++++.-......+-..++..+|++++..++..|+..
T Consensus 360 ~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~ 438 (678)
T KOG1293|consen 360 HLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGI 438 (678)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHH
Confidence 11 4455566666666665532222223334668999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH
Q 014088 290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 369 (431)
Q Consensus 290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (431)
++.+|+|+...-+ .....++..|+++.+.+++..+++.++..++|+|++++-.++...+ ...+. .=+.
T Consensus 439 ~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k----------~~~~~-ki~a 506 (678)
T KOG1293|consen 439 TLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK----------FQLLA-KIPA 506 (678)
T ss_pred HHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH----------HHHHH-HhhH
Confidence 9999999987654 5677889999999999999999999999999999999987766543 11222 2235
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088 370 EKIENLQSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 370 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
..|..+.+++++.|++.+-.++.++..+-
T Consensus 507 ~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 507 NLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 66888899999999999999999887763
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.4e-13 Score=124.21 Aligned_cols=311 Identities=18% Similarity=0.211 Sum_probs=219.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC----ChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 134 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 134 (431)
.++|.|+++|.+++....+.|..+|..+|.+++..-+.-.... .++.+++.. +++++.+|..|+.++-.+.-..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 4789999999999999999999999999998765432211112 356677777 77899999999999988877655
Q ss_pred CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 135 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 135 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
..-+.....++..+..+-++.+++||+..|.++..+....+++...-. .++++.++...++.+.+|...|+.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 555666788899999999999999999999999999987776543222 2788888888899999999999999999987
Q ss_pred CChhhhHHHh--hcCChHHHHHHhcccc----------------------------------------------------
Q 014088 215 GDDMQTQCII--NHQALPCLLDLLTQNY---------------------------------------------------- 240 (431)
Q Consensus 215 ~~~~~~~~~~--~~~~l~~L~~lL~~~~---------------------------------------------------- 240 (431)
... ....+. -.+++|.|++-|..+.
T Consensus 286 qpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred CcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 652 111111 1245666665442210
Q ss_pred ---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC----HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088 241 ---KKSIKKEACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313 (431)
Q Consensus 241 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 313 (431)
+..+|+..+.+|.-++ .+....+ +|.|-+.|.++.+.+|+.++.+++.++.++.......+-+
T Consensus 365 ~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-- 434 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-- 434 (885)
T ss_pred ccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--
Confidence 0233443333333333 2233333 4555555666789999999999999998765444444433
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
+++.|++++.++.+-++..++|+|.+....--+... ...|...+. -|..-.-+.|..|+++|..+..+
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~------~~~f~pvL~------~ll~~llD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR------DEYFKPVLE------GLLRRLLDSNKKVQEAACSAFAT 502 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh------HhhhHHHHH------HHHHHHhcccHHHHHHHHHHHHH
Confidence 789999999999999999999999998765443321 111222222 23333457889999999988886
Q ss_pred h
Q 014088 394 Y 394 (431)
Q Consensus 394 ~ 394 (431)
+
T Consensus 503 l 503 (885)
T KOG2023|consen 503 L 503 (885)
T ss_pred H
Confidence 5
No 34
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.50 E-value=1e-11 Score=110.44 Aligned_cols=371 Identities=13% Similarity=0.071 Sum_probs=261.2
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCCh---HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFG---AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAV 80 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~ 80 (431)
..++-|+-...++ +++-+-+-++| +...-+...|.|..-++.+.+.++++.|+++.|...+.- .+....+...
T Consensus 124 a~~~lgGaqivid--~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll 201 (604)
T KOG4500|consen 124 AFFNLGGAQIVID--VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLL 201 (604)
T ss_pred HHHhcCCceehHh--hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHH
Confidence 3455566666666 22222222222 555566678999999999999999999999999988754 5666666666
Q ss_pred HHHHHhcCCChH-HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-CC--
Q 014088 81 WALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND-- 156 (431)
Q Consensus 81 ~~L~~l~~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~-- 156 (431)
....|+.+-..+ ..+...+......+++++.....+++++.+..++...+.++.........|.+..+..+++. ++
T Consensus 202 ~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t 281 (604)
T KOG4500|consen 202 APFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT 281 (604)
T ss_pred hccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc
Confidence 666666543222 23455566667788888877778899999999999999987666666667888888888875 21
Q ss_pred -----hHHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH
Q 014088 157 -----DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 230 (431)
Q Consensus 157 -----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 230 (431)
-.....++....-+..+++ ..+.+...+ +++.+...+.+++........-+++|+++..+ ....+++.+++.
T Consensus 282 ~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~n 359 (604)
T KOG4500|consen 282 KKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLN 359 (604)
T ss_pred chHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHH
Confidence 1233444544455555554 445566655 89999999999999999999999999999766 445677889999
Q ss_pred HHHHHhccc----chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088 231 CLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306 (431)
Q Consensus 231 ~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 306 (431)
.|+.++... .+-+++..++.+|.|+... ..++..++..|+.+.++.+++...+.+...-..++.-+....+.-..
T Consensus 360 kL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~ 438 (604)
T KOG4500|consen 360 KLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIAC 438 (604)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHH
Confidence 999988542 1567788899999999985 34467888999999999999999999999888888866554321222
Q ss_pred HHHHHCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHH
Q 014088 307 KFLVSQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 385 (431)
Q Consensus 307 ~~l~~~~~l~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~ 385 (431)
........++.|+.--+++|.. +.-...+.+.-++++..... +.-.+.+.|+++....+....+-..+.
T Consensus 439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd----------v~~tvpksg~ik~~Vsm~t~~hi~mqn 508 (604)
T KOG4500|consen 439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD----------VILTVPKSGGIKEKVSMFTKNHINMQN 508 (604)
T ss_pred HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh----------hHhhccccccHHHHHHHHHHhhHHHhH
Confidence 2222334566677666666643 66667777777777643322 345577788888888887777666666
Q ss_pred HHHHHH
Q 014088 386 KAVKIL 391 (431)
Q Consensus 386 ~a~~~l 391 (431)
.|.-++
T Consensus 509 EalVal 514 (604)
T KOG4500|consen 509 EALVAL 514 (604)
T ss_pred HHHHHH
Confidence 665444
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.48 E-value=1.3e-12 Score=101.61 Aligned_cols=118 Identities=31% Similarity=0.515 Sum_probs=107.1
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
..+.|++|.+++ +..++++.++..++++|.+++..+++.+..+.+.|+++.++++|.++++.++..++++|+++
T Consensus 3 ~~~~~~i~~l~~------~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVS------LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHH------HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467889999999 44466689999999999999998899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
+...+..+..+...|.++.+++.+ .+.+.++++.++|+|.+++.
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 998877788888999999999999 66689999999999999874
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=2.4e-12 Score=100.18 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=109.8
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
+++.|+++.++.++.++++.++..+++++++++...+.....+++.++++.+.+++.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998787888888899999999999998 99999999999999999877
Q ss_pred HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
.....+.+.|+++.+++++...+.++++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 878888899999999999999999999999999999863
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.44 E-value=1.7e-10 Score=114.00 Aligned_cols=318 Identities=18% Similarity=0.211 Sum_probs=226.2
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
+++++. +++...+.-+-..+..+...+++..-. ++..+.+=|.++++.++..|++++++++ .++....
T Consensus 47 vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~---- 114 (526)
T PF01602_consen 47 VIKLIS-SKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP---- 114 (526)
T ss_dssp HHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH----
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH----
Confidence 334454 788899999988899988866663222 5678888889999999999999999997 3333333
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
.++.+.+++ .++++.+|+.|+.++..+.+..|.. .... +++.+.+++.++++.++..|+.++..+ ..++.....
T Consensus 115 -l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 115 -LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp -HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred -HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence 466778888 7889999999999999999874332 2222 799999999999999999999999999 333322111
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
+. ...+..+.+++...++-.+..+++++..++...+..... ..+++.+..++++. ++.+..+++.++..+... +
T Consensus 189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~ 262 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-P 262 (526)
T ss_dssp HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-H
T ss_pred hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-h
Confidence 11 144566666677888889999999999998766544421 35678888888888 999999999999988765 3
Q ss_pred HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 014088 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN 339 (431)
Q Consensus 261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~ 339 (431)
. .-..+++.|..++.++++.++..++..|..++... +. . +. ........+. +++..++..++.+|..
T Consensus 263 ~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~---~-v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 263 E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PP---A-VF--NQSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HH---H-HG--THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-ch---h-hh--hhhhhhheecCCCChhHHHHHHHHHhh
Confidence 3 22246788999999889999999999999998765 11 1 12 2233333444 7889999999999999
Q ss_pred HHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088 340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET 393 (431)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~ 393 (431)
++..... .. .++.|.... +.++++++..+...+..
T Consensus 331 l~~~~n~-------------~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 331 LANESNV-------------KE------ILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp H--HHHH-------------HH------HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred cccccch-------------hh------HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 8865432 22 123334444 45566676666555544
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.41 E-value=8e-11 Score=121.90 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=195.7
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 137 (431)
...++.|+..|+++++.+|..|+..|+.+.. ...++.|...| .++++.++..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC---
Confidence 4578899999999999999999999998742 12577888888 88899999999999988854321
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
..+.+...|.++++.+|..++.+|..+.... ...++..|.++++.+|..++.+|+.+-.
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 2356778888999999999999998865322 2346678899999999999999987521
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.+.|...+.++ +..||..++.+|+.+..... ..++.|..++.++++.||..|+.+|+.+
T Consensus 744 -----------~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 -----------VESVAGAATDE-NREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred -----------cHHHHHHhcCC-CHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 24467788888 99999999999999865422 2367788999999999999999999998
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 377 (431)
.... .....+...++++++.++..++++|..+-. ...++.|..++.
T Consensus 803 g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------------------~~a~~~L~~~L~ 848 (897)
T PRK13800 803 GCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAA-----------------------DVAVPALVEALT 848 (897)
T ss_pred CCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------------------cchHHHHHHHhc
Confidence 5421 123567788888999999999999986421 113466888899
Q ss_pred CCCHHHHHHHHHHHHHh
Q 014088 378 HDNTEIYEKAVKILETY 394 (431)
Q Consensus 378 ~~~~~v~~~a~~~l~~~ 394 (431)
++++.||..|...|..+
T Consensus 849 D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 849 DPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 99999999999999986
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=7.7e-11 Score=116.40 Aligned_cols=325 Identities=21% Similarity=0.228 Sum_probs=235.4
Q ss_pred HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
+.+.+.+. .++.-+..++.-|..+.....+.. .+.+.+++++.+.+...++-+...+..+...+++.. +.
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH-
Confidence 33455433 245556666655554433222222 578899999999999999999999999998877632 22
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
++..+.+-+ .++++.++..|+.++++++.. .....+++.+.+++.++++.||+.|+.++..+....++...
T Consensus 80 --~~n~l~kdl-~~~n~~~~~lAL~~l~~i~~~------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 --IINSLQKDL-NSPNPYIRGLALRTLSNIRTP------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp --HHHHHHHHH-CSSSHHHHHHHHHHHHHH-SH------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred --HHHHHHHhh-cCCCHHHHHHHHhhhhhhccc------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 467777878 788999999999999999733 45567889999999999999999999999999877665433
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
.. +++.+..++.+.++.++..|+.++..+ ..++.....++ ...+..|.+++... ++-.+..++.++..++...
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhccccc-chHHHHHHHHHHHhcccCC
Confidence 22 689999999999999999999999999 33332211111 13455566666667 8999999999999998865
Q ss_pred HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088 260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~ 339 (431)
+..... ..+++.+..++.+.++.|..+++.++..+.... . .-..+++.|..++.++++.++..++..|..
T Consensus 224 ~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 224 PEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred hhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 655422 346778888888889999999999999887643 2 222368899999999999999999999999
Q ss_pred HHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
+...... .+. ...-.+.-+..+++..++..+..++..+.+.
T Consensus 294 l~~~~~~---------------~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 294 LAQSNPP---------------AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HCCHCHH---------------HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hhcccch---------------hhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 8876511 111 1111233445688899999999998877653
No 40
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.37 E-value=8e-11 Score=110.20 Aligned_cols=327 Identities=14% Similarity=0.074 Sum_probs=212.9
Q ss_pred hHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHH--HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088 17 VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTR--VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 17 v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
+-+.+.++|.+++...++..+++++..+...++..-. ......+++.+..++..+...+...-+....++++.. ..+
T Consensus 96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq 174 (678)
T KOG1293|consen 96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQ 174 (678)
T ss_pred hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhh
Confidence 3344455776555478999999999999875533322 2233356666666665344444444444445555443 445
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHH---HhhcCCCCCChhhH-----hhhHH--HHHHhhcCCChHHHHHHH
Q 014088 95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQT-----RPALP--ALERLIHSNDDEVLTDAC 164 (431)
Q Consensus 95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~-----~~~i~--~L~~lL~~~~~~v~~~a~ 164 (431)
......+..+.+.-++ ...+...|..|..+++ ++..+++...+... .++.+ .+.+++++++...+..++
T Consensus 175 ~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl 253 (678)
T KOG1293|consen 175 LILCNAGILEKINILL-MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL 253 (678)
T ss_pred heeccccchhhHHHHH-HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence 5666666666555555 5556788888888888 67666644433322 34444 445566666666666666
Q ss_pred HHHHHhccCCh----------------HHHHH-----------------------------------HHHhCcHHHHHHh
Q 014088 165 WALSYLSDGTN----------------DKIQA-----------------------------------VIEAGVCPRLVEL 193 (431)
Q Consensus 165 ~~L~~l~~~~~----------------~~~~~-----------------------------------~~~~~~i~~L~~l 193 (431)
.++.++..... ..+-. .++....+...++
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el 333 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTEL 333 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH
Confidence 66655543210 00000 0000011111111
Q ss_pred ----------------------------------------------------cCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088 194 ----------------------------------------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 194 ----------------------------------------------------l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
....+...+..++-++.+++..-...+.
T Consensus 334 lf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 334 LFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1123444566666666666554332333
Q ss_pred HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
.+-...+...+++++..+ +..+...+..+++|+..........++..|++..+.+++.+.++.++..+.|+|.++..++
T Consensus 414 g~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred CCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 333567889999999888 8999999999999999976777889999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.......+...=....+..+.+.+++.+++.++..++|+....++
T Consensus 493 de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 493 DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 655555555555577788888999999999999999999877443
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-10 Score=108.64 Aligned_cols=257 Identities=17% Similarity=0.160 Sum_probs=204.3
Q ss_pred HHhhhccCCChHHHHHHHHHHHH-HcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTN-IASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
|++-|....++..|.+|+.-|+. ++.++++.-..+--..++|.|+.+|+. .+.++...|+++|.+++.--|.....++
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 44456656578888888887775 445666665555556789999999998 5699999999999999987777778889
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC-hHH
Q 014088 99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT-NDK 177 (431)
Q Consensus 99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~ 177 (431)
+.++|+.++..|..-+-.++.++++.+|..+++..+ ......|.+...+..|.--...+++.|+.+..|+|..- ++.
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999777788999999999999999853 34455788888888888777889999999999999653 233
Q ss_pred HHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC---hhhhHHHhhcCChHHHHHHhcccc---hhhHHHHHHHH
Q 014088 178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD---DMQTQCIINHQALPCLLDLLTQNY---KKSIKKEACWT 251 (431)
Q Consensus 178 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~ 251 (431)
...++ ..+|.|..+|+..+....+.++-++..++... +...+.+...+++....+++.-.. +..+....+++
T Consensus 330 f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrm 407 (1051)
T KOG0168|consen 330 FHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRM 407 (1051)
T ss_pred chHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHH
Confidence 34444 57899999999999999999999999998653 455666778899999999886541 23445566778
Q ss_pred HHHhhcCCHHHHHHHHHhCCHHHHHHHHcc
Q 014088 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLN 281 (431)
Q Consensus 252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 281 (431)
+.-++.+++.....+.+.++...|..++..
T Consensus 408 ls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 408 LSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 888888888888888888888888887754
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.34 E-value=1.2e-09 Score=101.10 Aligned_cols=321 Identities=12% Similarity=0.109 Sum_probs=223.4
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
.++.+|.....+++....+..+..+...++.....+.+. .....++.+|..++.-+...++.+|..+....+...
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~ 136 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM 136 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc
Confidence 455678778888999999999999998777766666653 566778889988999999999999999975433211
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcc
Q 014088 95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSD 172 (431)
Q Consensus 95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 172 (431)
......-....+...+....+...+..++.+|..|.+..+.+......++++.|..+|+.. +..++..++.++.-++-
T Consensus 137 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 137 EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1110001223445555333456778888999999999876665555567899999999853 56889999999998887
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh------hhhHHHhhcCChHHHHHHhcccc-hhhH
Q 014088 173 GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNY-KKSI 244 (431)
Q Consensus 173 ~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v 244 (431)
+.+ ........++++.++++++. ...++.+-++.++.|+...+. .....++..++++.+-.+..... ++++
T Consensus 217 ~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL 295 (429)
T cd00256 217 NPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDL 295 (429)
T ss_pred cHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHH
Confidence 765 44556667999999999976 578899999999999987531 23334556666555544443322 3333
Q ss_pred HHHHHHHH-------HHhhcCCHHHHH------------------------HHHHhC--CHHHHHHHHcc-CCHhHHHHH
Q 014088 245 KKEACWTI-------SNITAGNVNQIQ------------------------AIIEAG--IIGPLVNLLLN-AEFEIKKEA 290 (431)
Q Consensus 245 ~~~a~~~L-------~nl~~~~~~~~~------------------------~l~~~~--~i~~L~~ll~~-~~~~v~~~a 290 (431)
....-..- ..++. -+++.. .+-+.+ ++..|+++|.. .++.+..-|
T Consensus 296 ~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVA 374 (429)
T cd00256 296 TDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVA 374 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehh
Confidence 32211111 11110 112222 222222 47888999854 477788889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
|.=++.++... |..+..+.+.|+=..+++++.++|++++..|+.++..++-.
T Consensus 375 c~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 375 CHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred hhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999876 35666666789999999999999999999999999998754
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.5e-08 Score=96.97 Aligned_cols=325 Identities=15% Similarity=0.180 Sum_probs=237.9
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCC
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 89 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~ 89 (431)
.|+.+++ .+.++.-.+-|+.|++.|..++. ..|..+...| ++.+++.|+. .++++...++.++.++...
T Consensus 23 TI~kLcD-----RvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 23 TIEKLCD-----RVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred HHHHHHH-----HHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 3455555 66666667899999999999986 6677776655 8999999886 6799999999999999754
Q ss_pred Ch------HH-----------HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--h-HhhhHHHHH
Q 014088 90 SP------KC-----------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--Q-TRPALPALE 149 (431)
Q Consensus 90 ~~------~~-----------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~-~~~~i~~L~ 149 (431)
.. .. -..+...+.+..++..+ ...|-.+|.++...+.++....|..... . ...++..++
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 41 00 12344566788888888 7778999999999999999887443222 2 256899999
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---Cc-ccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SP-SVLIPALRTVGNIVTGDDMQTQCIIN 225 (431)
Q Consensus 150 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~-~v~~~a~~~l~~l~~~~~~~~~~~~~ 225 (431)
.+|.+....+|..++..|..++.+++.-.+.+.-.+++..|..++... +. -|...|+..+.|+...+..+...+.+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 999999999999999999999998876655555568999999999763 33 56777999999999999888888899
Q ss_pred cCChHHHHHHhcccc--h------h----hHHHHHHHHHHHhhc-CCH-----HHHHHHHHhCCHHHHHHHHccC--CHh
Q 014088 226 HQALPCLLDLLTQNY--K------K----SIKKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFE 285 (431)
Q Consensus 226 ~~~l~~L~~lL~~~~--~------~----~v~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~i~~L~~ll~~~--~~~ 285 (431)
.+.+|.|.++|.... + . .-...++.++..+.. +++ .+...+...+++..|+.++.++ ..+
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d 332 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD 332 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence 999999998885321 1 1 112345566666665 222 2224566788999999999877 578
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCC----------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 014088 286 IKKEAAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~----------~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~ 347 (431)
|+..++-+++++.+.+. .....|.+.. ++-.+..+..+. ....+..++.++..++......
T Consensus 333 IltesiitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 333 ILTESIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 99999999999998763 3333333321 122334444444 4577888888988888766544
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.29 E-value=6.2e-09 Score=103.62 Aligned_cols=250 Identities=15% Similarity=0.103 Sum_probs=169.3
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+..+++.+++.-....+.+++...++.. +. ++..+.+=++++++.+|..|+++++++-. +..... .+.
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~ 143 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLE 143 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHH
Confidence 3346667888877777777776554432 11 46788888888999999999999999854 222222 345
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
++.+.+ .+.++-+|+.|+.++.++.+..+. .....++++.+.+++.+.++.+..+|+.+|..+....+.... ...
T Consensus 144 ~lkk~L-~D~~pYVRKtAalai~Kly~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~ 218 (746)
T PTZ00429 144 PLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSN 218 (746)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHH
Confidence 667777 788999999999999999876542 233457888899999999999999999999999876554333 222
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQI 263 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~ 263 (431)
+.+..++..+..-++-.+...+.+|......++.. . ..++..+...|++. ++.|..+|+.++.++... +++..
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHH
Confidence 45566666666555445556666664432222211 1 24677788888888 899999999999998764 23433
Q ss_pred HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
..+.. .+-+.++.+ .+++++++..++..|..++.
T Consensus 293 ~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 293 ERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 33322 123445555 34566777777777665554
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=99.27 E-value=1.6e-08 Score=100.74 Aligned_cols=214 Identities=15% Similarity=0.119 Sum_probs=149.2
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 107 (431)
+++|.+|..|++.|+++-. ++..+. +++.+.+.+.+.++-||..|+.++.++....++ .+...+.++.+.
T Consensus 116 d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~ 185 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLV 185 (746)
T ss_pred CCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHH
Confidence 5678999999999888765 333322 456778888899999999999999999876653 344567788888
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 187 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 187 (431)
++| .+.++.+..+|+.+|..+....+. ........+..++..+..-++=.+..++.+|....-...... ..++
T Consensus 186 ~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il 258 (746)
T PTZ00429 186 ELL-NDNNPVVASNAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLL 258 (746)
T ss_pred HHh-cCCCccHHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHH
Confidence 887 789999999999999999876543 233446667777777777777777777777755332222111 2567
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088 188 PRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 261 (431)
..+...|++.++.|...|++++.++.... +.....+.. .+.+.++.++ ++ +++++.-++..+.-+....+.
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence 88888899999999999999999987542 222222111 2234455553 34 567777777776666554343
No 46
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.26 E-value=3e-08 Score=88.72 Aligned_cols=349 Identities=14% Similarity=0.150 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHcCCC-hHhHHHHHhC---CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHH-------HH
Q 014088 32 AVQFEAAWALTNIASGT-SENTRVVIDH---GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV-------LS 99 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~---g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i-------~~ 99 (431)
.+.+.-+..+.++.... ++.|..+... ..+..++.+++. ..++....++..+.-+.+.+.. |..+ ..
T Consensus 34 ~ise~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s-r~~lf~~~a~~~k 112 (442)
T KOG2759|consen 34 MISEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS-RVDLFHDYAHKLK 112 (442)
T ss_pred HHhHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch-HHHHHHHHHHhhh
Confidence 34444455555554322 2345556554 356677777776 4456666666666665544332 2211 12
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK 177 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 177 (431)
...-...+.+| ...+.-+...+.++++.++...+..... ...-....+-..+++ .+.+.+..+.+||..+...++-+
T Consensus 113 ~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR 191 (442)
T KOG2759|consen 113 RTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR 191 (442)
T ss_pred ccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence 23356677888 6667777788999999999876433322 223334455555655 57788888999999998887655
Q ss_pred HHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088 178 IQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 178 ~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
.. +....++..++..+.+ .+-.++...+.+++.|+.... ..+.+...+.++.|..++++...++|-+-++.++.|+
T Consensus 192 ~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 192 YA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred he-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5666777888888743 456788889999999987655 4455677799999999999887899999999999999
Q ss_pred hcCCH------HHHHHHHHhCCHHHHHHHHccC--CHhHHHHH-------HHHHHHhcCC--------------CC----
Q 014088 256 TAGNV------NQIQAIIEAGIIGPLVNLLLNA--EFEIKKEA-------AWAISNATSG--------------GS---- 302 (431)
Q Consensus 256 ~~~~~------~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a-------~~aL~~l~~~--------------~~---- 302 (431)
+...+ +....++..++.+.+-.+-+.+ |.++.... -.....++.. ++
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 98653 5556777776666555554443 44433221 1111111111 00
Q ss_pred ----HHHHHHHHHC--CChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088 303 ----NEQIKFLVSQ--GCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 375 (431)
Q Consensus 303 ----~~~~~~l~~~--~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 375 (431)
.++...+.+. .++..|+.+++. .||.+...|+.-+..+++.... .+..+.+.||.+.+.+|
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~L 417 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNL 417 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHH
Confidence 2445555544 358888999975 4688888899889998887654 37789999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcC
Q 014088 376 QSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 376 ~~~~~~~v~~~a~~~l~~~~~ 396 (431)
++|+|++|+-.|..+++++..
T Consensus 418 lnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 418 LNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hcCCCchHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=6.9e-09 Score=98.88 Aligned_cols=328 Identities=16% Similarity=0.193 Sum_probs=211.4
Q ss_pred cccchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088 2 CCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 81 (431)
Q Consensus 2 ~c~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~ 81 (431)
||.|- ++| .|-|++-+-+ ++++..-+..|+.+++.+..+....+..-+-.+++|.++.++.+++..++..+.|
T Consensus 356 ~~~D~-----Iv~-~Vl~Fiee~i-~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAw 428 (859)
T KOG1241|consen 356 CVGDD-----IVP-HVLPFIEENI-QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAW 428 (859)
T ss_pred Hhccc-----chh-hhHHHHHHhc-CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHH
Confidence 56664 344 3333333344 4777899999999999999877777666666789999999999999999999999
Q ss_pred HHHHhcCCChHHHH-HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC----CC----Ch-hhHhhhHHHHHHh
Q 014088 82 ALGNVAGDSPKCRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP----QP----LF-EQTRPALPALERL 151 (431)
Q Consensus 82 ~L~~l~~~~~~~~~-~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~----~~-~~~~~~i~~L~~l 151 (431)
+|+.++...++... .......+..++.-| ...|.+..++||++.+|+..-+ .. .. .....++..|++.
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999977664321 122233344455555 2357889999999999985421 11 00 1122333344443
Q ss_pred hcC---CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH----hcC-----CCC----cccHHHHHHHHhHhhcC
Q 014088 152 IHS---NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----LLR-----HPS----PSVLIPALRTVGNIVTG 215 (431)
Q Consensus 152 L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~-----~~~----~~v~~~a~~~l~~l~~~ 215 (431)
-+. ++..+|..+..+|..+..+.++....++. ++...+.. .++ ..+ .+++...+.+|..+.+.
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk 585 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRK 585 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34678999999999999887765443332 22222222 222 221 23455566666666554
Q ss_pred ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHH
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI 294 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL 294 (431)
....+....+ .++..+++++.+..+..+...|..+++.++..-......... .+.|.|..-| +..+..|...|+..+
T Consensus 586 ~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglV 663 (859)
T KOG1241|consen 586 VGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLV 663 (859)
T ss_pred ccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4333333332 567788888888546778889999999888632222222222 3677787777 445888999999999
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088 295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKA 343 (431)
Q Consensus 295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~l~~~ 343 (431)
+.+++.-..+...+ ..+++..|++.|+++ +..++-..+.+++.+.-.
T Consensus 664 gdl~raL~~~i~py--~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 664 GDLARALEDDILPY--CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHhhhhhH--HHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 99987654344333 446889999999876 456666666666666543
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.5e-09 Score=93.35 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=156.8
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
++.+++-++.|+.-|..++. +-++...+...|+...++.++++.+..+|..|+|+++..+..+|..+..+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45667889999999999986 67888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
+..+..+.+..++..|+.+++.+.++. +........++...|...+++ .+...+..++..+..+..........+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999987788889999999999999998 444444446679999999998 46778889999999998765544444445
Q ss_pred hCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 184 AGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 184 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
.++...+..+....+..+...++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5666666777777788888888877766654
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.9e-09 Score=99.87 Aligned_cols=313 Identities=15% Similarity=0.091 Sum_probs=205.7
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC-ChHH
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNG-ALMP 105 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~i~~ 105 (431)
+...++..++.+|+.+|.+-....-.-....++..+++.+.. ++..+|..|+.+|.|-......+...-.+.+ +.+.
T Consensus 142 ~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv 221 (859)
T KOG1241|consen 142 QASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQV 221 (859)
T ss_pred cchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeee
Confidence 333689999999999998543332222224678888887765 7889999999999986432211111111112 2334
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH--------
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-------- 176 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------- 176 (431)
.++.- ++++.+++..|..||..+..-.... ..-+...+++.-+..+++++++|...+....++++...-+
T Consensus 222 vcEat-q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 222 VCEAT-QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred eeecc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 7889999999999999887653111 1122244666667778899999999999999988753211
Q ss_pred -------HHHHHHH---hCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 177 -------KIQAVIE---AGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 177 -------~~~~~~~---~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
....+.. .+++|.|+++|.. +++.....|-.||.-++..... .++. .+++.+-+.++++
T Consensus 301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNP 376 (859)
T ss_pred hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCc
Confidence 0011111 2567778888743 3456777777777776653322 2222 5667777788888
Q ss_pred chhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088 240 YKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 318 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 318 (431)
+.+-|..|+.+++.+..+. ++....+ ..+.+|.++.++.++..-++..+.|+|+.++................+..+
T Consensus 377 -dwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 377 -DWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred -chhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 9999999999999998853 4444444 446899999999988889999999999999876532111111112223333
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088 319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKN 349 (431)
Q Consensus 319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 349 (431)
..=++ +.|.+..+++|++.++.+.......
T Consensus 455 ~~gL~-DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 455 LEGLN-DEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred HHHhh-hCchHHHHHHHHHHHHHHHHHHhcc
Confidence 33332 5788999999999999977666543
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.1e-09 Score=91.85 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=158.7
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH
Q 014088 155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 234 (431)
Q Consensus 155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 234 (431)
.+.+-+..|+.-|..++.+-+. ...++..|++..++.++.+.+..+|..|+++++.++.+++.....+++.++++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4677788888888888877654 455888899999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 014088 235 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ 312 (431)
Q Consensus 235 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 312 (431)
.+.++.+..+|..|+++++++.++++.....+...+.+..|.+.++++ +...+..++..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 998876788899999999999998888888888888899999999984 77888999999999987553 222344456
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 313 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 313 ~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
+....+..+....+.++.+.++.++..++..-.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 667777777777788888888888777765443
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.2e-08 Score=97.58 Aligned_cols=288 Identities=16% Similarity=0.200 Sum_probs=211.4
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh----
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN---- 175 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~---- 175 (431)
-++.|+....++.=.+-|+.|+..|..+++. .+......+++.+++.|+.. |+++...++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 5778888887777788899999999999986 34445567888888888754 89999999999999987652
Q ss_pred --HHH----------HH-HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHH-h-hcCChHHHHHHhcccc
Q 014088 176 --DKI----------QA-VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI-I-NHQALPCLLDLLTQNY 240 (431)
Q Consensus 176 --~~~----------~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~-~~~~l~~L~~lL~~~~ 240 (431)
+.. +. +...+.+..++..+...+..||..++..+.++....+...+.+ + ..-++..++.+|.+.
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds- 178 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS- 178 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-
Confidence 111 11 2334788889999999999999999999999987765443333 3 557899999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC---C-HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---E-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 316 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~ 316 (431)
.+.+|.+++..|..+..+++...+.+.-.+++..|..++..+ + .-|...|+..+.|+..++. .+...|.+.+.++
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQNFFREGSYIP 257 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chhhHHhccccHH
Confidence 999999999999999998887666666678999999999764 2 3578889999999998765 5667888999999
Q ss_pred HHHhhcCC---CCH--------HH--HHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CH
Q 014088 317 PLCDLLNC---PDP--------RI--VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NT 381 (431)
Q Consensus 317 ~L~~ll~~---~~~--------~v--~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~ 381 (431)
.|..++.. .+. .+ ...++.++..++.-+..... .......+.+.++++.|-.++-|+ ..
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~------~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSI------THQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 99977763 221 11 12344555554433322111 111224677888899988887666 46
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 014088 382 EIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 382 ~v~~~a~~~l~~~~~~e~~ 400 (431)
+|+.-+.........+..+
T Consensus 332 dIltesiitvAevVRgn~~ 350 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNAR 350 (970)
T ss_pred hHHHHHHHHHHHHHHhchH
Confidence 6766666666555555444
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.10 E-value=6e-09 Score=94.97 Aligned_cols=227 Identities=14% Similarity=0.187 Sum_probs=163.7
Q ss_pred hHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhHh-------hhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088 103 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTR-------PALPALERLIHSNDDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 103 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 174 (431)
...++++|... +++++.++++..+..+....+........ ..+..+++++..+|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55667777666 78999999999999999987644333221 24567777889999999999999999998776
Q ss_pred hHHHHHHHHhCcHHHHHHhcCC----CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh------cccchhhH
Q 014088 175 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI 244 (431)
Q Consensus 175 ~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v 244 (431)
+....... .+.++.+++.+.+ ++..++..++.++.++... +..+..+.+.++++.+..++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 55433222 3556666666654 4556778899999999864 55778888899999999999 44547889
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 323 (431)
+.+++.++.-++.. ++....+.+.++++.|++++... ..+|.+-++.++.|++..........++..++++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999999887 78888899989999999999876 78999999999999999876557888888888887777765
Q ss_pred C--CCHHHHHH
Q 014088 324 C--PDPRIVTV 332 (431)
Q Consensus 324 ~--~~~~v~~~ 332 (431)
. .|+++.+-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 3 57777653
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=5.7e-09 Score=95.11 Aligned_cols=227 Identities=18% Similarity=0.253 Sum_probs=157.5
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHH------cCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 60 AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 60 ~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
....++.+|+. .++++.+.++..+..+..+.+...+.+.. .....++++++ ..+|..+...++.+|..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 45566666654 68899999999999998777654444443 22678888877 67799999999999999999
Q ss_pred CCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CCcc
Q 014088 132 GKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPS 200 (431)
Q Consensus 132 ~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~ 200 (431)
..+..........++.++..+. +++.+++..++.++.++...+. ....+.+.++++.+..++ .. ....
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 8766555533556666666655 3466778999999999997654 456678889999999999 22 3456
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHH
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLL 279 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll 279 (431)
+...++.++|.++... .....+.+.++++.+.++++....+++.+-++.++.|+....+ .....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 7888999999998854 4566677778999999999988789999999999999998544 3788888887777665555
Q ss_pred ccC--CHhHHHH
Q 014088 280 LNA--EFEIKKE 289 (431)
Q Consensus 280 ~~~--~~~v~~~ 289 (431)
..+ |+++...
T Consensus 293 ~rk~~Dedl~ed 304 (312)
T PF03224_consen 293 ERKWSDEDLTED 304 (312)
T ss_dssp SS--SSHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 544 7776644
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.07 E-value=1.6e-08 Score=90.50 Aligned_cols=275 Identities=13% Similarity=0.069 Sum_probs=193.8
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhH---HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENT---RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL 96 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 96 (431)
++.+|. .+++-+...+.+++..++......- +.-. ....|...+++ .+......+++||..+...+ +.|..
T Consensus 119 fl~ll~-r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~ 193 (442)
T KOG2759|consen 119 FLNLLN-RQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYA 193 (442)
T ss_pred HHHHHh-cCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhe
Confidence 344555 3456788878999988876332111 1111 12344445555 66777888899999998765 46888
Q ss_pred HHHcCChHHHHHHh-ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC
Q 014088 97 VLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 97 i~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 174 (431)
+...+++..++..+ .+..+-.++...+.|+|.|+-+++........+.++.|..++++. .++|.+-++.++.|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88889999999998 455578899999999999998875555555578999999999865 6889999999999999776
Q ss_pred h------HHHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHh-------HhhcCC--------------h--------
Q 014088 175 N------DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVG-------NIVTGD--------------D-------- 217 (431)
Q Consensus 175 ~------~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~-------~l~~~~--------------~-------- 217 (431)
+ .....++..++.+.+-.+... +|+++....-..-. .++... |
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 4 223345555555444333322 34443332222111 122110 0
Q ss_pred -hhhHHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088 218 -MQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294 (431)
Q Consensus 218 -~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 294 (431)
++...+- +..+++.|+++|+.+.++.+..-||.-++...++.|+....+.+.|+=+.+++++++++++||.+|+.|+
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 1111222 2345889999998886688889999999999998899999999999999999999999999999999999
Q ss_pred HHhcCC
Q 014088 295 SNATSG 300 (431)
Q Consensus 295 ~~l~~~ 300 (431)
..+..+
T Consensus 434 Q~lm~~ 439 (442)
T KOG2759|consen 434 QKLMVH 439 (442)
T ss_pred HHHHhh
Confidence 887653
No 55
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-06 Score=82.53 Aligned_cols=334 Identities=16% Similarity=0.116 Sum_probs=220.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
+.+++.+|.....|+.-+....... -...+.+.+.+++......-+..+.+.++.+..+... ..+.+.+++..+
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l 179 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNL 179 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHH
Confidence 3566788888888877665421111 1113567778888888888889999999998876643 455667788888
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 186 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 186 (431)
...+....+..-++.+..+....+..-........-..+|.++..+.+...++|..+..+...+...-+... ++ .+
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~l 255 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LL 255 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-Hh
Confidence 888844333333333444444444333333344456778888888888889999988888876654433221 11 23
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHH
Q 014088 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQ 264 (431)
Q Consensus 187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~ 264 (431)
++.++.-+....+..+..++..++.++...+.+....+ ..++|.+.+.|.+. .+++|+.+..++.+++. .+++ ++
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~ 332 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQ 332 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HH
Confidence 44444444444788899999999999988776655444 48999999999999 99999999999999987 4455 22
Q ss_pred HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 265 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 265 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
.++|.|++.+.+++..+. ++...|+.-.... .+.-+.. .++.|.+-+...+..+.+.+..++.|+++
T Consensus 333 -----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 333 -----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred -----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 257889998888763332 3333333322211 1111111 35555566666777888999999999998
Q ss_pred hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
.-+.... ....+.+. ++.++....+..|++|..+.++|..+.
T Consensus 402 LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 402 LVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred hhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 7643322 34444433 677787777889999999999885443
No 56
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=3.7e-08 Score=97.02 Aligned_cols=250 Identities=15% Similarity=0.206 Sum_probs=191.2
Q ss_pred hhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH
Q 014088 14 SLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93 (431)
Q Consensus 14 ~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 93 (431)
|.---|+++|.|++ .-=|..|+..|+....-.+-.-.....-|+.|.++++|+++-.+++...+.+...|..-++.+
T Consensus 470 PPeQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred ChHhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 33344577778873 344678888888887766777777778899999999999999999999999999987766778
Q ss_pred HHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhh-HhhhHHHHHHhhcCC-ChHHHHHHHHHHHH
Q 014088 94 RDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSN-DDEVLTDACWALSY 169 (431)
Q Consensus 94 ~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~ 169 (431)
+..+++.++-..+++.|..++ +++-+..|+.+|+.++.+.+..+... ..+++...+..++++ .+-++.+++-+|+.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 888888888888888885422 45788899999999999875554443 478889999999985 68899999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC----ChhhhHHH------------hhcCCh---H
Q 014088 170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCI------------INHQAL---P 230 (431)
Q Consensus 170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~ 230 (431)
|-.+.+...-.-.+.++.+.|+.+|.++-++||..|+.+|+.+... .++..... ++..+. -
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 9988765544455567889999999999999999999999999875 22222111 121222 2
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088 231 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267 (431)
Q Consensus 231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 267 (431)
.++.+++.. .+-+|.+.+-+|+.+..+.........
T Consensus 707 ~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 707 SLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 667777888 899999999999999886555444443
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2e-06 Score=82.00 Aligned_cols=190 Identities=17% Similarity=0.184 Sum_probs=124.2
Q ss_pred hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088 8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 87 (431)
..+.+-+..+. |.++..|-+|..|+..+..+....++.-. ..+|.|.+-|.++++.++..|..+++.|+
T Consensus 141 LARDLa~Dv~t------LL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELA 209 (877)
T KOG1059|consen 141 LARDLADDVFT------LLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELA 209 (877)
T ss_pred hhHHHHHHHHH------HHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 34456677777 55566678888888888888764444433 36788888888888899888888888888
Q ss_pred CCChHHH--------HHHH-------------------------HcCChHHHHHHhccccchhHHHHHHHHHHH--hhcC
Q 014088 88 GDSPKCR--------DLVL-------------------------SNGALMPLLAQFNEHAKLSMLRNATWTLSN--FCRG 132 (431)
Q Consensus 88 ~~~~~~~--------~~i~-------------------------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~--l~~~ 132 (431)
+.+|.+. ..+. ....+++|.+++.+..-..+...+..++.. ++.+
T Consensus 210 rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 210 RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 7665321 1111 111344444444222222223333322221 1111
Q ss_pred CCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 133 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 133 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
.+ .......-.+..|-.++.++|+.++.-.+.+++.+....+...+. --+.++++|.+.++++|..|+..+.-+
T Consensus 290 ~~-d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 MS-DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CC-CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11 122233456677777888999999999999999999887765542 236788999999999999999999888
Q ss_pred hc
Q 014088 213 VT 214 (431)
Q Consensus 213 ~~ 214 (431)
+.
T Consensus 364 Vs 365 (877)
T KOG1059|consen 364 VS 365 (877)
T ss_pred hh
Confidence 75
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.86 E-value=1e-06 Score=79.99 Aligned_cols=273 Identities=14% Similarity=0.165 Sum_probs=187.0
Q ss_pred HHHHHHcCChHHHHHHhccccch--hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHh
Q 014088 94 RDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYL 170 (431)
Q Consensus 94 ~~~i~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l 170 (431)
.+.+...|++..|++++ ..++. .++..+..+|..+..... .......+ +..++.+.+ ...++.....+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf-~aPn~et~vRve~~rlLEq~~~aeN-~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMF-QAPNLETSVRVEAARLLEQILVAEN-RDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHH-hCCchhHHHHHHHHHHHHHHHhhhh-hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34566678899999999 55543 458889998888765532 22222222 444555544 34678889999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 249 (431)
.++.+...+.++..|++..++...+..++.+.+.+.-+|+|++.+. ....+.+++..+-+.|..+-.+. ++-+|..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHH
Confidence 9999888888999999999999999999999999999999998754 34556677778888888888887 899999999
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 014088 250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329 (431)
Q Consensus 250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 329 (431)
.+++.++.. .+.-..+-.+|.+..+-.++..-++.--. +--...+....++ -++.|+.++++.-.+.
T Consensus 329 lAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FA---RD~hd~aQG~~~d---------~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRFA---RDAHDYAQGRGPD---------DLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchhh---hhhhhhhccCChH---------HHHHhhhhhhcchhhh
Confidence 999988775 55555555666655444444444432110 0111222223333 3566777777544443
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 330 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.++.+++-.++..-+..+ + -...+.+.|+|+.|.++..+++.--...|..+|.-
T Consensus 396 --q~i~AF~l~~EAaIKs~Q-------~-K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv 449 (832)
T KOG3678|consen 396 --QCIGAFYLCAEAAIKSLQ-------G-KTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV 449 (832)
T ss_pred --hhhHHHHHHHHHHHHHhc-------c-chhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 345555544443333211 1 15678899999999999999988777788887763
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.8e-07 Score=87.17 Aligned_cols=294 Identities=17% Similarity=0.192 Sum_probs=187.2
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 107 (431)
+++|.+|.-|++.++.+-.. .... -+...+...+++.++.+|..+..+..++-..++ +.+...|.+..|-
T Consensus 97 d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALK 166 (734)
T ss_pred CCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHH
Confidence 34455555555555444321 1111 245677778888899999998888888876554 4677788899999
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 186 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 186 (431)
.++ .++++.+..+|+.+|..+....+. .........+..++..++.-+.=-+...+.++.+-.-.++...+ .+
T Consensus 167 ~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i 240 (734)
T KOG1061|consen 167 DLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DI 240 (734)
T ss_pred HHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HH
Confidence 998 688999999999999999988754 23333355666666666654444455555555544433332222 45
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH
Q 014088 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 266 (431)
Q Consensus 187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 266 (431)
++.+...+.+.++.+...+...+..+....... ...+-...-+.++.++... . +++.-|+.-+.-+....++....-
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 677788888888888888888888887654432 2222235556666666655 3 555554444443333333321100
Q ss_pred -------------------------HH-hC---CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 014088 267 -------------------------IE-AG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 317 (431)
Q Consensus 267 -------------------------~~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~ 317 (431)
.. .. ++..+......-+.+..+++++++++++..-.. ..++++.
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~ 390 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSI 390 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHH
Confidence 00 01 233333333444788889999999999875421 1678999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 318 LCDLLNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 318 L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
|.++++.+...+.+.+...++.+++...+.
T Consensus 391 lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 391 LLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 999999777777777888888888876553
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.85 E-value=2.5e-07 Score=90.45 Aligned_cols=272 Identities=15% Similarity=0.151 Sum_probs=164.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHh
Q 014088 63 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 142 (431)
Q Consensus 63 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 142 (431)
.|++.+.+++.+.|--|..-|.+=.......-+.-.+...+..++++| .+.+.+++..|..|++-++.. .......
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsK---vke~~le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSK---VKEDQLE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhh---chHHHHH
Confidence 567777788888887776655443222111111112334577889999 888999999999999999854 2233334
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh----CcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCC
Q 014088 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA----GVCPRLVELLRH--PSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~ 216 (431)
..+..|..-+-++....+.-..-.|.....+-+......... .+.+.+...+.. +...++..++.+++.+....
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 555555555444444444333333332222211111112222 344444444432 44558888888887766543
Q ss_pred hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHH
Q 014088 217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAI 294 (431)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL 294 (431)
....-. +..+++..++.-+.++ ...+|+.|+.+|+.++.. +.+.... ++..|.+-|... .....+--+.+|
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHHH
Confidence 322221 4456777788888888 899999999999999973 3343333 344566555544 444444556667
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 295 SNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
+.+++..+.+....+ ...++.+.++. +..+.++++.++.++..++..+...
T Consensus 238 ~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 777665443332221 23677777777 6778899999999999999988764
No 61
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.7e-06 Score=81.25 Aligned_cols=297 Identities=13% Similarity=0.131 Sum_probs=203.1
Q ss_pred HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
..++....+++++.-|+.++.-+.. +.++-..+.+.|.+..|+++|.+ .|..|+.++.+|..+++... ......+.|
T Consensus 1777 ~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg 1853 (2235)
T KOG1789|consen 1777 ITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHG 1853 (2235)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcC
Confidence 3366667788999999998877766 78888899999999999999865 56788999999999987654 566777889
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---CCCChhhHhhhHHHHHHhhcCC-------------ChHH------
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSN-------------DDEV------ 159 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~i~~L~~lL~~~-------------~~~v------ 159 (431)
++..+..++-.+.++..+..++..++.+..+. |...+.....+-..++..++++ ++++
T Consensus 1854 ~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~ 1933 (2235)
T KOG1789|consen 1854 GLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVT 1933 (2235)
T ss_pred chhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhH
Confidence 99999999878888999999999999998876 3333333333333444444422 2222
Q ss_pred HHHHHHHHHHhc--------cCC------hHHH------------------HHH------------HHhCcHHHHHHhcC
Q 014088 160 LTDACWALSYLS--------DGT------NDKI------------------QAV------------IEAGVCPRLVELLR 195 (431)
Q Consensus 160 ~~~a~~~L~~l~--------~~~------~~~~------------------~~~------------~~~~~i~~L~~ll~ 195 (431)
+...-..+..+. +++ ++.. ..+ .-.++++.+..++.
T Consensus 1934 r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~ 2013 (2235)
T KOG1789|consen 1934 RQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS 2013 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc
Confidence 222222222221 100 0000 000 01134555566665
Q ss_pred CCCc--ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088 196 HPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 273 (431)
Q Consensus 196 ~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 273 (431)
.+.+ ......-.++..+....+.....+-..|.+|.++..+... +..+-..|.++|..|+.+ .-....+..-..+.
T Consensus 2014 ~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~ 2091 (2235)
T KOG1789|consen 2014 RPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCID 2091 (2235)
T ss_pred CCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccch
Confidence 5433 2333344455555566666666667789999999999887 777778999999999876 66677887766777
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 274 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 274 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
.++..+...- ....-|+.+|..+......+.....+..|.++.|..+++.
T Consensus 2092 ~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2092 GIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 7777776543 3334888999888876655666666788999999999974
No 62
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.1e-08 Score=91.00 Aligned_cols=305 Identities=13% Similarity=0.109 Sum_probs=198.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCCh
Q 014088 79 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD 157 (431)
Q Consensus 79 a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~ 157 (431)
++.+|-.+++.....|.-+.+..+.+.|++.| ++++..+...+...++|+.-.... .......+++..+++++.+.|.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34455556666666777788888899999999 777777777788888888765533 3344558999999999999999
Q ss_pred HHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHHhhc----CCh
Q 014088 158 EVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----QAL 229 (431)
Q Consensus 158 ~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~~l 229 (431)
.++....|.+.++..+.+...+ .+...-++..++.+.+++...++..+++++.|+...... .....++. -+.
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999877654322 244556789999999999999999999999999874432 22222221 245
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccC-----------CHhHHHHHHHHHHHh
Q 014088 230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWAISNA 297 (431)
Q Consensus 230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~~l 297 (431)
+.+++.+... ++-...+.++.|.+++..+....+.+.+ ..++..+..++... ...+-..-..+..++
T Consensus 568 k~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 568 KRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 6677777777 7777778899999998865555544443 34454444444221 111211222223333
Q ss_pred cCCCCHHHHHHHHHCCCh--HHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHH
Q 014088 298 TSGGSNEQIKFLVSQGCI--KPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 372 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l--~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 372 (431)
..+.. ..+. +.. +.+-.+= ..++.++.....|.+.++....+..+.. ...-.-.+++.+.|.-+.+
T Consensus 647 ~e~~d--~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~l 717 (743)
T COG5369 647 SENSD--KFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREWL 717 (743)
T ss_pred ccccc--cccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHHH
Confidence 33211 1111 111 1111111 1235567777888888755433322210 0111135778889999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHh
Q 014088 373 ENLQSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 373 ~~l~~~~~~~v~~~a~~~l~~~ 394 (431)
+.+++++++.|++++..+|+.+
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.8e-06 Score=80.54 Aligned_cols=287 Identities=15% Similarity=0.211 Sum_probs=160.8
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 107 (431)
+++.-++-.|+.+|++++. ++... .+.|-+-+++++.++.+|..|+.|...+....|+.... +++..-
T Consensus 118 s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~ 185 (866)
T KOG1062|consen 118 SSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFR 185 (866)
T ss_pred CCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHH
Confidence 4556778888889999986 44433 46688888999999999999999999998777664333 344445
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC---------------CChHHHHHHHHHHHHhcc
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSD 172 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~ 172 (431)
++| .+.+.-+.-.++..+..+|...+.. ......+++.++..|++ ++|-++..+++.|+-+.+
T Consensus 186 ~lL-~ek~hGVL~~~l~l~~e~c~~~~~~-l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 186 KLL-CEKHHGVLIAGLHLITELCKISPDA-LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHH-hhcCCceeeeHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 555 3444455555555555555543211 11112244444443331 245556666666666665
Q ss_pred CChHHHHHHHHh--------------C---cHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHh----------
Q 014088 173 GTNDKIQAVIEA--------------G---VCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCII---------- 224 (431)
Q Consensus 173 ~~~~~~~~~~~~--------------~---~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---------- 224 (431)
++++..+.+.+- | +.+.+..++. .+++..+..|+.+|+.+..+.+.+.+.+.
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~ 343 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ 343 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcC
Confidence 554433322110 0 0111111111 13455666666666666655543332211
Q ss_pred hc----CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 225 NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 225 ~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
+. .-=..+++.|+++ +..+|+.|+..+..+... .++..+ +..|+.+|...+.+.+...+.-+..++..
T Consensus 344 d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 344 DPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred CcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 00 1123567777777 888888888777766543 334444 44588888877888888888888888765
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
-.|+.+=. ++.+...++..-.-+...+...+.+++.
T Consensus 416 faP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 416 FAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred cCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 54332222 4445555544433333333333444433
No 64
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=8.9e-07 Score=84.62 Aligned_cols=320 Identities=14% Similarity=0.133 Sum_probs=194.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH--HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP- 136 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~- 136 (431)
++..++..|+++++.+|++++..++.++.--..+ .+.+...| ..|.+.| ....+++.-..+.++..+.......
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence 5567777889999999999999999987321111 11222222 2355556 5678888888888877776554222
Q ss_pred ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
...-..+++|.|..+|++...+++.++...++.++...++... ..+ ..+-=.|+.+|...+.++|+++...++.++..
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~-aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS-AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 2223578999999999999999999999999999987765322 111 02223466777788889999999999988764
Q ss_pred ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
-.. ..++..|++-|+.. +-..|....-+++-.+..+.. -.++|.|+.=...++..|+.-.+.+++
T Consensus 956 IGP-------qdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen 956 IGP-------QDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred cCH-------HHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHHH
Confidence 322 24566677777655 444444333333333332111 126788887777788899999999999
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh---------------hcCCCCCc-ch-
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK---------------NMGNTGGV-NL- 358 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~---------------~~~~~~~~-~~- 358 (431)
.+..........++.. +.+.|.+.+...|.--++.+..++..+.-...... .+..++.. +.
T Consensus 1021 f~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 8876443233333333 45556666666666556666666555543211100 00000000 00
Q ss_pred ------HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 359 ------FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 359 ------~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
++..+.-.-.++-+.+=+-|+...|++....+++.++-...+
T Consensus 1099 ~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1099 DEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQD 1146 (1172)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccc
Confidence 111111111122222335688899999999999887765544
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.77 E-value=5.6e-07 Score=81.65 Aligned_cols=271 Identities=19% Similarity=0.203 Sum_probs=179.3
Q ss_pred ccchhhhhhhhhhhhHHHHHhhhccCCCh--HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHH
Q 014088 3 CFDLRFECILISLFVDQFFFHCFFSCCFG--AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA 79 (431)
Q Consensus 3 c~~~~~~~g~~~~~v~~~lv~~L~~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a 79 (431)
|...|.. |.+..+++ +..+++. +++.+|.+.|..+.. .++++.+...| +..++.+-+. ..++.++..
T Consensus 173 CD~iR~~-~~lD~Llr------mf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~ 242 (832)
T KOG3678|consen 173 CDAIRLD-GGLDLLLR------MFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSV 242 (832)
T ss_pred hhHhhcc-chHHHHHH------HHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHH
Confidence 5555544 56666666 4444443 569999999998875 68899999887 6666666554 678899999
Q ss_pred HHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcCCCh
Q 014088 80 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDD 157 (431)
Q Consensus 80 ~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~ 157 (431)
+.+|.++..++.+....++..|++..++-.. +..++.+.+.++.+|.|++.+.. ..+.......-..|..+..+.|.
T Consensus 243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe 321 (832)
T KOG3678|consen 243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE 321 (832)
T ss_pred HHHHHHHhhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999988888899999999999888 56679999999999999998762 22233335566677777777888
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc
Q 014088 158 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 237 (431)
Q Consensus 158 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 237 (431)
-.+.+||.++..++.+.+-. ..+.++|-+..+-.++...++.--.. --...+.+. ...-++.|+.+|+
T Consensus 322 l~R~~AClAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLd 389 (832)
T KOG3678|consen 322 LLRLHACLAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLD 389 (832)
T ss_pred HHHHHHHHHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhh
Confidence 89999999999999876533 33555666555555555544432111 001111111 1134778888888
Q ss_pred ccchhhHHHHHHHHHHHhhc-CC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 238 QNYKKSIKKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 238 ~~~~~~v~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
+. .-+.+--+++-++-=+. .+ ......+.+-|.|+.|-++..+++.--..-|-.+|.-+
T Consensus 390 S~-R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 390 SN-RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred cc-hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 66 55555444444432221 11 12223444568899998888876544334444444444
No 66
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.2e-07 Score=85.97 Aligned_cols=309 Identities=17% Similarity=0.098 Sum_probs=192.5
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
++. .++.++|..|+..+.|++..... ........+...+.++..+.+..++. +...+-.+..+-..-+.. .-.+
T Consensus 92 cf~-D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~---tFsL 165 (675)
T KOG0212|consen 92 CFS-DQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAS---TFSL 165 (675)
T ss_pred hcc-CccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccc---ccCH
Confidence 555 44569999999999999862111 11111123445566666665555544 333333332111000000 1124
Q ss_pred HHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc---CChHH
Q 014088 104 MPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDK 177 (431)
Q Consensus 104 ~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~ 177 (431)
+.++.+|. ...++..|...+.-|..+-.-++.........+++.|..+|.+++.+++..+=.+++++.. +.|..
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 44444442 4558888888888777775553333333457899999999999999999877777766542 22221
Q ss_pred HHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh-hHHHHHHHHHHHhh
Q 014088 178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNIT 256 (431)
Q Consensus 178 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~ 256 (431)
+-....++.++..+.++++.++..|+.-+..+..-.+... ...-++++..+++.+.+. ++ .++..+..+-+.+.
T Consensus 246 ---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 246 ---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLL 320 (675)
T ss_pred ---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHH
Confidence 1222567888899999999999999988888877655332 233457788888888877 44 34444443322222
Q ss_pred c--CCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088 257 A--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 333 (431)
Q Consensus 257 ~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 333 (431)
. .++...+. ++ ..++..+.+.+.+...+.|..++.-+..+-.....+... ....+...|..-++..+.++...+
T Consensus 321 ~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 321 KLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCchhHHHHHH
Confidence 2 11222222 23 235777778888888888988888887776654322222 235678888889999999999999
Q ss_pred HHHHHHHHHhhhh
Q 014088 334 LEGLENILKAGEA 346 (431)
Q Consensus 334 l~~L~~l~~~~~~ 346 (431)
+..+.+++...+.
T Consensus 398 L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 398 LSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhcCccc
Confidence 9999999876554
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=8.9e-06 Score=77.80 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=147.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
+-+-++.+|.+.-+-+|..|+.++..++...|+. +.. .++.|.+.| .++|+.++..|+.+++.|++.+|..-..
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr~--~FprL~EkL-eDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LRP--CFPRLVEKL-EDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hhh--hHHHHHHhc-cCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 4577899999999999999999999999766653 222 578899999 8999999999999999999987543221
Q ss_pred hH----------------------------------hhhHHHHHHhhcCCC-hHHHHHHHHHHH--HhccCChHHHHHHH
Q 014088 140 QT----------------------------------RPALPALERLIHSND-DEVLTDACWALS--YLSDGTNDKIQAVI 182 (431)
Q Consensus 140 ~~----------------------------------~~~i~~L~~lL~~~~-~~v~~~a~~~L~--~l~~~~~~~~~~~~ 182 (431)
.. ..+++.+..++++.. ..+...+..++. +++.+.++....+
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi- 297 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI- 297 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH-
Confidence 10 112223333333221 233333444332 2232322221111
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
+ -.++.|-.++.+.++..+...+-+++.+....+...+. .-+.+++.|.+. ++.+|..|+-.+.-+.. .++
T Consensus 298 q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~gmVs--kkN 368 (877)
T KOG1059|consen 298 Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLYGMVS--KKN 368 (877)
T ss_pred H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHHHHhh--hhh
Confidence 1 24567777788899999999999999999877755542 346688999888 99999999988877654 244
Q ss_pred HHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCH
Q 014088 263 IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSN 303 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~ 303 (431)
...+ +..|+.-+... ....|.+.+.-+..+|+.++.
T Consensus 369 l~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 369 LMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 4443 33455544433 346777777777777766543
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.75 E-value=1.4e-06 Score=83.39 Aligned_cols=256 Identities=12% Similarity=0.093 Sum_probs=161.6
Q ss_pred ccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 26 FSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 26 ~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
+.+.++.+|.+|+..++.++.--.. .-+.+...| -.|.+.|....+++.-..+.++..|.....-.+..---.+.+
T Consensus 808 Lnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 808 LNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 4567789999999998887641111 112233334 246677888888888777776666652110000000123578
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
+.|..+| ++....+++++...+..++...+....... -.+-=-|+.+|.+-+.++|..+..+++.+++.-...
T Consensus 886 PrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 886 PRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred ccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 8888889 777899999999999999988755333322 223334677788889999999999999998654322
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VN 261 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~ 261 (431)
.++..|++-|...+-..|....-+++-.+..+.. ..++|.|++=...+ +..|+.-.+.+++.+...- .-
T Consensus 960 --dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 960 --DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred --HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHH
Confidence 2334444444433322222222222222222211 14678888887778 8889999888888775421 11
Q ss_pred HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
...++. -+.|.|-+.|.+.+.--|+-|+.++.+++.+.
T Consensus 1030 skdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1030 SKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 122222 25777788888889889999999999998764
No 69
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.75 E-value=2.7e-06 Score=79.14 Aligned_cols=311 Identities=13% Similarity=0.099 Sum_probs=197.3
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
-..+++..-++.|+.+++.+..+..+.+..-+-..++|.+...+.++..-++..++||++.++.+.+. .+-..+.+.
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~ 450 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLV 450 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCcccccc
Confidence 34577788999999999999875544443333357788888888888888999999999999865432 344445555
Q ss_pred HHHHHhcc--ccchhHHHHHHHHHHHhhcCCCCCC---hhhHhhhHHH----HHHhhc--CCChHHHHHHHHHHHHhccC
Q 014088 105 PLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPL---FEQTRPALPA----LERLIH--SNDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 105 ~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~i~~----L~~lL~--~~~~~v~~~a~~~L~~l~~~ 173 (431)
..++.... ...+.+..+++|...|+..+-+... ......+.+. |++.-+ .++...|..+..+|+.+..-
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~ 530 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI 530 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence 54444321 2357778899999999988763221 1122333333 332222 34567788888888887765
Q ss_pred ChHHHHHHHHhCcHHHHHH-----------hcCCCC----cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 174 TNDKIQAVIEAGVCPRLVE-----------LLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 174 ~~~~~~~~~~~~~i~~L~~-----------ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
.++....+.. |+...... .+...+ .+++.+.+..|..+.+..+...+.. ...++..++++|.+
T Consensus 531 ~~d~V~~~~a-~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les 608 (858)
T COG5215 531 CPDAVSDILA-GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILES 608 (858)
T ss_pred cchhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhc
Confidence 5543332211 22222222 222222 3455666666666665443322222 22456778888877
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088 239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 318 (431)
Q Consensus 239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 318 (431)
.....+......++++++..-.+...... ..++|.|.+-++..+..+...|+..++.++..-+.+...+ ....+..|
T Consensus 609 ~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~L 685 (858)
T COG5215 609 TKPTTAFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSL 685 (858)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHH
Confidence 73445566778889998875334343333 4589999999988899999999999999987554343333 34568889
Q ss_pred HhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088 319 CDLLNCP--DPRIVTVCLEGLENILKA 343 (431)
Q Consensus 319 ~~ll~~~--~~~v~~~al~~L~~l~~~ 343 (431)
+++++++ +.+++-..+.++..+...
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHHHH
Confidence 9999865 456666666666666543
No 70
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.3e-07 Score=86.97 Aligned_cols=264 Identities=14% Similarity=0.172 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc
Q 014088 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 112 (431)
Q Consensus 33 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~ 112 (431)
-...++.+|..++.+-.-.|..+.+..+.+.|+++|..++..+.-.+...++|....-.+.+..+.+.+++..+++++ .
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence 345566677777776677888899999999999999998888888888889998876667889999999999999999 6
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCC-Chhh-HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH---HHHHHHHh---
Q 014088 113 HAKLSMLRNATWTLSNFCRGKPQP-LFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA--- 184 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--- 184 (431)
+.|..++.+..|++.++..+.... +... .+-.+..++.+.+++.-.++..++..+.|+..+... ....+++.
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 778899999999999998876333 3332 356788999999999999999999999999864332 11111111
Q ss_pred C-cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhc-------------------------
Q 014088 185 G-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT------------------------- 237 (431)
Q Consensus 185 ~-~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~------------------------- 237 (431)
. ++..++..+...+|-.....+.++.+++..++.....+. ....+..+.++|.
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 1 445566666777777777778888888877665444333 2233333333330
Q ss_pred ---------------------------ccchhhHHHHHHHHHHHhhc---CC------HHHHHHHHHhCCHHHHHHHHcc
Q 014088 238 ---------------------------QNYKKSIKKEACWTISNITA---GN------VNQIQAIIEAGIIGPLVNLLLN 281 (431)
Q Consensus 238 ---------------------------~~~~~~v~~~a~~~L~nl~~---~~------~~~~~~l~~~~~i~~L~~ll~~ 281 (431)
...+++.-.+..|.+.|+.. +. .+.++.+.+.|+-+.+..+-.+
T Consensus 644 v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~ 723 (743)
T COG5369 644 VNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAK 723 (743)
T ss_pred ecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhcc
Confidence 01134456677788877664 12 2556677777777766666666
Q ss_pred CCHhHHHHHHHHHHHh
Q 014088 282 AEFEIKKEAAWAISNA 297 (431)
Q Consensus 282 ~~~~v~~~a~~aL~~l 297 (431)
.+..||+.+-.+|.++
T Consensus 724 ~Sl~vrek~~taL~~l 739 (743)
T COG5369 724 DSLIVREKIGTALENL 739 (743)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 7889999999999876
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.3e-05 Score=69.29 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=180.5
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
..++.++ .+.++.++..|..-+..++......-.......++.+.+++...++ ...|+.++.|++.+..-+ +.+++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-KKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-HHHHH
Confidence 4567777 8889999999999999888772222222235678889999987776 778999999999876433 44555
Q ss_pred hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh------hcCChHHHHHHhcccchh-hHHHHHHHHHHHhh
Q 014088 184 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKK-SIKKEACWTISNIT 256 (431)
Q Consensus 184 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~ 256 (431)
. ++..++..+.++.......++..+.|++...+....... +.+.+.........+.+. .--...+..++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 888888999888888999999999999987664433322 245555566666555331 22334556777887
Q ss_pred cCCHHHHHHHHHhCC--HHHHHHHHccCCHhHHH-HHHHHHHHhcCCCCH---------HHHHHHHH-------------
Q 014088 257 AGNVNQIQAIIEAGI--IGPLVNLLLNAEFEIKK-EAAWAISNATSGGSN---------EQIKFLVS------------- 311 (431)
Q Consensus 257 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~---------~~~~~l~~------------- 311 (431)
.. +..+..+.+... ...+..+-. .+..+|+ ..+.+|.|.+..... ....+++-
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 65 455555555443 223333223 4566664 477888887654321 11111110
Q ss_pred CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHH
Q 014088 312 QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYE 385 (431)
Q Consensus 312 ~~~l~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~ 385 (431)
.+.-.-| +++. .+++.++...+++|.-++.-.. .+..+...|+.+.+..+ ...+++++++
T Consensus 239 ~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 239 AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 0112222 4443 3478899999999988875443 37889999999999998 4568999999
Q ss_pred HHHHHHHHhcC
Q 014088 386 KAVKILETYWV 396 (431)
Q Consensus 386 ~a~~~l~~~~~ 396 (431)
....+.+.+..
T Consensus 305 ace~vvq~Lv~ 315 (353)
T KOG2973|consen 305 ACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHh
Confidence 88888777666
No 72
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.71 E-value=1e-05 Score=79.60 Aligned_cols=362 Identities=14% Similarity=0.152 Sum_probs=208.7
Q ss_pred HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
+.+.+... +...++..++..++.+...-...--. ...+++..++.-+.++...+|..++.+|+.++...+. ....
T Consensus 136 l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly~- 211 (1233)
T KOG1824|consen 136 LKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLYV- 211 (1233)
T ss_pred HHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHHH-
Confidence 33444332 33457888888777654422111111 2345667777777888899999999999999865432 2222
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh---cCCChHHHHHHHHHHHHhccCChH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---HSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
+.+..+++-|.....+...+.-..+|..+++....+.-......+|.+.+.. +..+.++|+.++.++..+....+.
T Consensus 212 -~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 212 -ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred -HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 3677888888777777888888889999998765555555677888888888 677899999999999988776655
Q ss_pred HHHHHHHhCcHHHHHHhcCCC----------------------------------CcccHHHHHHHHhHhhcCChhhhHH
Q 014088 177 KIQAVIEAGVCPRLVELLRHP----------------------------------SPSVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll~~~----------------------------------~~~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
.+..... .++..+++.+..+ ++.||+.|++++..+.....+....
T Consensus 291 ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~ 369 (1233)
T KOG1824|consen 291 EILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPD 369 (1233)
T ss_pred hhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4432222 3444555544310 2358999999998887554322211
Q ss_pred H------------------hhcCChHHHHHHhcccc------------------------------------------hh
Q 014088 223 I------------------INHQALPCLLDLLTQNY------------------------------------------KK 242 (431)
Q Consensus 223 ~------------------~~~~~l~~L~~lL~~~~------------------------------------------~~ 242 (431)
+ +...++..++.+|.+.. ..
T Consensus 370 ~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~ 449 (1233)
T KOG1824|consen 370 FYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSV 449 (1233)
T ss_pred HHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccc
Confidence 1 12223333333332110 00
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088 243 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320 (431)
Q Consensus 243 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 320 (431)
+.+..+...|..+....|+....- ....+|.++..+.+. ....+..++..+.+....+.++...-.. ....+++..
T Consensus 450 kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~Ls~~v~~ 527 (1233)
T KOG1824|consen 450 KTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SALSPPVVA 527 (1233)
T ss_pred cchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hhhhhHHHH
Confidence 011111111111111111100000 011355566566554 4567778888888877766655433311 223444555
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhc
Q 014088 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 321 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~ 395 (431)
....+=+++...|+.....+++.-...++.- .-..+++...+-.. .+..| ..+.+.+|+++|...+..+.
T Consensus 528 aV~d~fyKisaEAL~v~~~lvkvirpl~~~~-~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 528 AVGDPFYKISAEALLVCQQLVKVIRPLQPPS-SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAISCMGQII 598 (1233)
T ss_pred HhcCchHhhhHHHHHHHHHHHHHhcccCCCc-cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5556667888888888888877665544310 01122333332211 24444 46789999999988876643
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=8.5e-06 Score=70.37 Aligned_cols=264 Identities=14% Similarity=0.110 Sum_probs=164.8
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
+..+.+|.+|..|+..+.+++.. ..+.... +...++.+.++++...+ .+.|+.++.|++.+. ..++.+++. .+
T Consensus 11 ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~~-~~ 84 (353)
T KOG2973|consen 11 LLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQD-LL 84 (353)
T ss_pred HhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHHH-HH
Confidence 44577899999999999999874 2222222 23578889999987666 678899999998764 467777765 66
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-------hhhHHHHHHhhcCC-C-hHHHHHHHHHHHHhccCC
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSN-D-DEVLTDACWALSYLSDGT 174 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~i~~L~~lL~~~-~-~~v~~~a~~~L~~l~~~~ 174 (431)
..++..+ .++........|.+|+|+++.......... .++......+...+ + ..-..+.+..+.|+++..
T Consensus 85 k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~ 163 (353)
T KOG2973|consen 85 KVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFE 163 (353)
T ss_pred HHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhh
Confidence 6667766 566667888999999999998632221111 23333333333332 2 234566777888888765
Q ss_pred hHHHHHHHHhCc--HHHHHHhcCCCCcccHHH-HHHHHhHhhcCChhhhHHHhh--cCChHHHHH---------------
Q 014088 175 NDKIQAVIEAGV--CPRLVELLRHPSPSVLIP-ALRTVGNIVTGDDMQTQCIIN--HQALPCLLD--------------- 234 (431)
Q Consensus 175 ~~~~~~~~~~~~--i~~L~~ll~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~--------------- 234 (431)
..+ ..+..... .+.+..+ ...+..+|+. .+++|.|+|.....+. .+++ .++++.++-
T Consensus 164 ~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 164 AGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 444 22333332 2223333 3356667655 7889999887655332 2332 123333322
Q ss_pred ------Hhc----ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcC
Q 014088 235 ------LLT----QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS 299 (431)
Q Consensus 235 ------lL~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 299 (431)
.|. ..+++.+|..-+.+|.-+|.. ...++.+...|+.+.+-.+-... ++++++.+-....-+..
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 221 112789999999999999886 56688888888777665555444 66666555554444433
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.65 E-value=2.7e-06 Score=79.84 Aligned_cols=330 Identities=12% Similarity=0.115 Sum_probs=200.1
Q ss_pred hccCCChHHHHHHHHHHHHHcCCCh--HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-HHHHHcC
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-DLVLSNG 101 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~ 101 (431)
++.+..|.+|.+|+..++.++.--. ..-+.+...| ..|.+.|....+++.-..+.++..+..... .+ -.---.|
T Consensus 612 ~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~~mqpPi~~ 688 (975)
T COG5181 612 LLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FRSMQPPISG 688 (975)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-ccccCCchhh
Confidence 3457779999999998887754111 1112222223 345666777888888887777777753211 00 0011246
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
+++.|..+| ++...++..+....+..+|...|....... -.+-=-|+..|.+-+.++|.+|..+++.+++.-..+
T Consensus 689 ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--- 764 (975)
T COG5181 689 ILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--- 764 (975)
T ss_pred ccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH---
Confidence 888999999 777899999999999999988755433322 223335677788889999999999999988654322
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-C
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-N 259 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~ 259 (431)
.++..|++-|...+-..|....-+++-.+..+. -..++|.|+.=...+ +..++.-.+.+++.+... .
T Consensus 765 ----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 765 ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred ----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHH
Confidence 234444444444333333332223333332221 124577777777777 888888888888877542 1
Q ss_pred HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
.....++.. +.|.|-+.+.+.++--|+-|...+.+++.++..- ....++. .+..|..-+-.+.|.+.....+++.
T Consensus 833 ~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~Eg~e 908 (975)
T COG5181 833 QASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFDEGME 908 (975)
T ss_pred HHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHHHHHH
Confidence 222222222 5677777888889999999999999998875310 0011111 2233333333456666665555554
Q ss_pred HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
.+... +...-.+.-+++=+-|++..|+++....++..+-
T Consensus 909 ~~~~~-------------------lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 909 SFATV-------------------LGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred HHHHH-------------------hccHHHHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence 44322 2211123335555789999999998888776544
No 75
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.62 E-value=3.5e-05 Score=72.13 Aligned_cols=242 Identities=16% Similarity=0.045 Sum_probs=154.8
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088 59 GAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137 (431)
Q Consensus 59 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 137 (431)
.+++.++..|. .++..++..+++++... +.+. .+..++..| .+.++.++..+..+|..+-..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCch-----
Confidence 35777888884 46677776665555422 2221 367888888 677788888888888765433
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
...+.|..++.+.++.++..++.++..... ...+.+..+|++.++.++..++++++.+-..
T Consensus 117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred -----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 577888888888899998888877765221 2235677888888899999999999887532
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
..++.|...+.+. ++.||..|+++++.+.. ++ .+..+..+...........+..++...
T Consensus 178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 3456677778888 89999999988877633 22 233444444444444444434444333
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 377 (431)
+.+ ..++.|..+++.+. ++..++.++..+- ....++.|...++
T Consensus 237 ---~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg-----------------------~p~av~~L~~~l~ 279 (410)
T TIGR02270 237 ---GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG-----------------------DVEAAPWCLEAMR 279 (410)
T ss_pred ---Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC-----------------------CcchHHHHHHHhc
Confidence 211 24666777776533 6677777776431 1223444555554
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 014088 378 HDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 378 ~~~~~v~~~a~~~l~~~~~ 396 (431)
++. +++.|...++....
T Consensus 280 d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 280 EPP--WARLAGEAFSLITG 296 (410)
T ss_pred CcH--HHHHHHHHHHHhhC
Confidence 443 77777777777555
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.60 E-value=2.1e-06 Score=80.56 Aligned_cols=265 Identities=17% Similarity=0.166 Sum_probs=175.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH--HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP- 136 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~- 136 (431)
++..++.+|+++.+.+|..++...+.++.--..+ .+.+...| ..|.+-| ....+++.-..+.+++.+.......
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5567778889999999999999888886311100 12222222 2244445 4557888877777777665543222
Q ss_pred ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
...-..+++|.+..+|++...++..+....++.++.+.++.+. ..+ ..+-=.|+..|.+.+.++|++|...++.++..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~-~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG-VREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 2223478999999999999999999999999999988775432 111 02223466777888899999999999988764
Q ss_pred ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
-..+ .++..|++-|+.. +-..|....-+++-.+..+- --.++|.|+.=...++..|+.-.+.+++
T Consensus 761 iGPq-------dvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 IGPQ-------DVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred cCHH-------HHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 3222 4566677777665 44444444444443333110 1135777877777788899999999999
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
.+.......-..++.. +.+.|-+.+...|+--++.+...+..+.-.+.
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 9876543333344333 45566667777888888888888888876654
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.60 E-value=2.4e-05 Score=73.06 Aligned_cols=351 Identities=11% Similarity=0.028 Sum_probs=220.7
Q ss_pred HHhhhc-cCCChHHHHHHHHHHHHHcCCChHhHHHHHhC---C-------Ch-HHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 21 FFHCFF-SCCFGAVQFEAAWALTNIASGTSENTRVVIDH---G-------AV-PIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 21 lv~~L~-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g-------~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+++.|- ....+.+|..|..+|.|-...+++.++.=... | -+ ...++.|.++.+..-..|...++.|+.
T Consensus 44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~ 123 (858)
T COG5215 44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123 (858)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 344442 34457899888888888654444433322211 1 11 233456778888888888888888874
Q ss_pred CChHHHHHHHHcCChHHHHHHh----ccccchhHHHHHHHHHHHhhcCCCCCChhhHhh--hHHHHHHhhc-CCChHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIH-SNDDEVLT 161 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~-~~~~~v~~ 161 (431)
-. .-.+..+.++..+ ........+..++.++++.|............+ ++..+...++ .++..+|.
T Consensus 124 ~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRL 196 (858)
T COG5215 124 ME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRL 196 (858)
T ss_pred hh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHH
Confidence 22 1123344444444 234566788999999999998852212222222 2223333344 34678999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088 162 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 240 (431)
Q Consensus 162 ~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 240 (431)
.++.+|.+-..- .......--..=+++.....-+.++.+++..+..|+..+..-.-...+..++.-+.......++++
T Consensus 197 aaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~- 275 (858)
T COG5215 197 AALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ- 275 (858)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 999999873211 111111011112455566667788999999999999999876655666666666667777888888
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHH----------------HhCCHHHHHHHHccC-------CHhHHHHHHHHHHHh
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAII----------------EAGIIGPLVNLLLNA-------EFEIKKEAAWAISNA 297 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~----------------~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l 297 (431)
++++...+...-+.+|...-+.--... -.+++|.|+++|... ++.+...|..+|.-+
T Consensus 276 nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf 355 (858)
T COG5215 276 NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF 355 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence 999999998877777753111111111 123789999999652 466777777777777
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 377 (431)
+....... .+ .++..+-+-+.+++..-++.+.-+++.++......- ...+. ...++.|..+.+
T Consensus 356 aq~~gd~i----~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~-----------lT~~V-~qalp~i~n~m~ 418 (858)
T COG5215 356 AQLKGDKI----MR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC-----------LTKIV-PQALPGIENEMS 418 (858)
T ss_pred HHHhhhHh----HH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH-----------HHhhH-HhhhHHHHHhcc
Confidence 65443221 11 255556667778888889999999999987654432 22222 445788888888
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 014088 378 HDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 378 ~~~~~v~~~a~~~l~~~~~ 396 (431)
++.--+++.+.|.+...-+
T Consensus 419 D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred cceeehhhHHHHHHHHHHH
Confidence 8888888888888766543
No 78
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=9.7e-06 Score=77.91 Aligned_cols=310 Identities=15% Similarity=0.078 Sum_probs=162.5
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 107 (431)
+++.-+|=.+++.|+.+-. ++.- ...+|.+...|++.+.-+|+.|..++..|-..... . -.++-+.+-
T Consensus 110 HPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDapeLi~ 177 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPELIE 177 (948)
T ss_pred CchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHHHHH
Confidence 4555666666666666533 3322 25678888899999999999999999988654211 1 123455566
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
..|....|+..+++|...|...-.. ..+..+...+. +-++.++......+...+...+....
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~----- 242 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA----- 242 (948)
T ss_pred HHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----
Confidence 6676778888999888766654322 22233322222 22345555555555555544433222
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh---------------------------------hcCChHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---------------------------------NHQALPC 231 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---------------------------------~~~~l~~ 231 (431)
..++.+..+|.+.++.++..|..++-+++.... ..+... -.+.+-.
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD 321 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD 321 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 344555555555555555555544444443221 111000 0123333
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-----C------CHhHHHHHHHHHHHhcCC
Q 014088 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----A------EFEIKKEAAWAISNATSG 300 (431)
Q Consensus 232 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~------~~~v~~~a~~aL~~l~~~ 300 (431)
++.+|..+ +-++|..++.....|+.+ .-+..++++|+. . +.+-|+.-+.++...+.+
T Consensus 322 vLrvLss~-dldvr~Ktldi~ldLvss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 322 VLRVLSSP-DLDVRSKTLDIALDLVSS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHcCcc-cccHHHHHHHHHHhhhhh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 44444444 555555555444444331 112222332221 0 123455555566555544
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcCC
Q 014088 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD 379 (431)
Q Consensus 301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~ 379 (431)
-. +.. ..+++.|++.+.+.++.....++..+...++...+.+ ..+ +++ +..+-.-.
T Consensus 390 Fp-~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~i-----i~~l~~~~~~ir 446 (948)
T KOG1058|consen 390 FP-EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASI-----IEKLLETFPQIR 446 (948)
T ss_pred Ch-HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHH-----HHHHHHhhhhhc
Confidence 32 222 2357777888877777766666666666665544322 111 111 22222234
Q ss_pred CHHHHHHHHHHHHHhcCCCCC
Q 014088 380 NTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 380 ~~~v~~~a~~~l~~~~~~e~~ 400 (431)
..++.+-|.|++..|...+++
T Consensus 447 S~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 447 SSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred ccccchhHHHHHHHHHhhhHH
Confidence 556778888888888877764
No 79
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.56 E-value=1.1e-05 Score=69.81 Aligned_cols=269 Identities=16% Similarity=0.146 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 014088 117 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 196 (431)
Q Consensus 117 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 196 (431)
+.+..-..++..+....+........-+...|-++++.-++-.+.-|.+++.++......+.....+...-..++.++++
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n 202 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN 202 (432)
T ss_pred HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33444444555555443322222222233344455555566678889999999987765554444455566677888876
Q ss_pred --CCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCH
Q 014088 197 --PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 272 (431)
Q Consensus 197 --~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i 272 (431)
....++..++.+++.++.... ..+-+- -...+..++++.+.....++-+-++..+.|++... ...+..+.-.|-+
T Consensus 203 ~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~ 281 (432)
T COG5231 203 YVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDI 281 (432)
T ss_pred hhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcch
Confidence 456788889999999987543 222111 22456777888877767888888999999999843 3444444444434
Q ss_pred HHHHHHHc-cC--CHhHHHHHHHHHHHhcC---------------------CCC--------HHHHHHHHHC--CChHHH
Q 014088 273 GPLVNLLL-NA--EFEIKKEAAWAISNATS---------------------GGS--------NEQIKFLVSQ--GCIKPL 318 (431)
Q Consensus 273 ~~L~~ll~-~~--~~~v~~~a~~aL~~l~~---------------------~~~--------~~~~~~l~~~--~~l~~L 318 (431)
.+.++.|. .+ +.+++...-..=..+-. .++ ..+...+.+. .++..|
T Consensus 282 ~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L 361 (432)
T COG5231 282 SKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVL 361 (432)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHH
Confidence 44445443 33 44443222111111111 000 1233444433 347778
Q ss_pred HhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 319 CDLLNCPDPR-IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 319 ~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
..+++..++. ....|+.-+..+++.... ....+...|+.+.|.+|++|++++|+-.|..+++.+.+.
T Consensus 362 ~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 362 KKYLQSNNPNTWICVACSDIFQLVRASPE------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHhcCCCCceEeeeHhhHHHHHHhCch------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 8888776554 445566666666665433 477788999999999999999999999999999887654
Q ss_pred C
Q 014088 398 E 398 (431)
Q Consensus 398 e 398 (431)
+
T Consensus 430 ~ 430 (432)
T COG5231 430 E 430 (432)
T ss_pred h
Confidence 3
No 80
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=7.7e-05 Score=70.76 Aligned_cols=289 Identities=17% Similarity=0.194 Sum_probs=182.2
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhcCCC-hHHHHH
Q 014088 19 QFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ-AVWALGNVAGDS-PKCRDL 96 (431)
Q Consensus 19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~-a~~~L~~l~~~~-~~~~~~ 96 (431)
+.+.+++. +.+..-+..+.+.+..+..+. ....+.+.+++..+.+..++.....++. ++.+....+..- +.....
T Consensus 137 ~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 137 ELLLELLT-STKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred HHHHHHhc-cccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence 33444555 566678888888888887643 3445666788888999888855444443 333333322111 111111
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088 97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
+.. .++.++... .+..+.+|..+..+...+...-+ .....-++|.++.-+..........++..++.++...+.
T Consensus 214 iv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 214 IVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRCLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred HHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHhcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 111 344455555 46678888888888777765531 112234555555555545778888999999999988876
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh-hhHHHh------------------------------h
Q 014088 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCII------------------------------N 225 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~------------------------------~ 225 (431)
... ..-..++|.+...|-+..++++..+..++.+++..-+. .++.++ +
T Consensus 288 qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 288 QLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD 366 (569)
T ss_pred HHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec
Confidence 655 45558999999999999999999999999888743211 111111 1
Q ss_pred cCChHHHHHHh----cccchhhHHHHHHHHHHHhhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 226 HQALPCLLDLL----TQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 226 ~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
...+..++.++ ... +...++.++.++.|++. .++......+.. ++|.+-..+.+..+++|..+.++|+.+..
T Consensus 367 ~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred chhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 11233333333 333 56778899999999997 356655555543 67777777777789999999999998876
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 300 GGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 300 ~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
.-.. .. ..+.++.+.+.+..
T Consensus 445 ~~g~---~~--f~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 445 RLGE---VS--FDDLIPELSETLTS 464 (569)
T ss_pred HHHh---hc--ccccccHHHHhhcc
Confidence 4321 11 15566667666653
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.53 E-value=7.3e-05 Score=69.19 Aligned_cols=336 Identities=16% Similarity=0.071 Sum_probs=203.5
Q ss_pred HHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccc-cchhHHH
Q 014088 42 TNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLR 120 (431)
Q Consensus 42 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~ 120 (431)
..+....+..+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++..|..+ .+..-|.
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 333334444444444334455555444444599999999999998887654 45556666555566666443 3556678
Q ss_pred HHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcc
Q 014088 121 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200 (431)
Q Consensus 121 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 200 (431)
+|+..+..+..-.... ...-.+++..++.+.++.+...+..|+.++..++-.+|+ .+...|++..+.+.+.++..+
T Consensus 87 QALkliR~~l~~~~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHhcCCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHh
Confidence 9999998888764222 123467889999999999999999999999999988764 477889999999998876666
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc------chh--hHHHHHHHHHHHhhcCCHHHHHHHHHh-CC
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GI 271 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~ 271 (431)
+....+.++..+..... .++.+...--++.++.-+.+. .+. +--..+..++..+-+.=+.......+. ..
T Consensus 163 ~~~~l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~ 241 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG 241 (371)
T ss_pred HHHHHHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence 77788888888876543 444343323344444444322 012 233344455555544322211111121 46
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH------CCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~l---~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
+..|++.|..+++++|...+..+..+..-..+.....+.. .+-. ..+.+-...... ....-..-=.+++.
T Consensus 242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~ 320 (371)
T PF14664_consen 242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVN 320 (371)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHH
Confidence 8889999999999999999999999987664433222211 0111 000000000000 00000000011111
Q ss_pred hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 014088 343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW 395 (431)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 395 (431)
..-. .....+.++|.++.|.++..+. ++.+..+|.-+|..++
T Consensus 321 ~y~a-----------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 321 HYLA-----------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHH-----------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1110 0234567799999999997655 9999999999888765
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.50 E-value=7.2e-05 Score=70.04 Aligned_cols=240 Identities=17% Similarity=0.039 Sum_probs=167.2
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.++..|...+++.++..++.++..... + .++..|+..|.+.++.++..+...|+.+-. +
T Consensus 58 ~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~-------- 116 (410)
T TIGR02270 58 LLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R-------- 116 (410)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h--------
Confidence 445566556667777766665543221 1 138999999999999999999999987632 1
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
...+.|+..| .+.++.++..++.++...-. ...+.+..+|++.++.++..++.+++.+...
T Consensus 117 -~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 117 -QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred -HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 2456788888 77889999888877776221 2456788889999999999999999987643
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
..++.|...+.+.++.|+..++..++.+-. + ..+..+....... ....+..+..++... ..
T Consensus 178 -----~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~--~~ 238 (410)
T TIGR02270 178 -----LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA--GG 238 (410)
T ss_pred -----cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC--Cc
Confidence 344567777999999999999999977633 2 1234455534333 344444444344333 21
Q ss_pred HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088 260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~ 339 (431)
+ ..++.|..+++++. ++..++++++.+-... .++.|+..+.. +.+...|-+++..
T Consensus 239 ~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~------------av~~L~~~l~d--~~~aR~A~eA~~~ 293 (410)
T TIGR02270 239 P---------DAQAWLRELLQAAA--TRREALRAVGLVGDVE------------AAPWCLEAMRE--PPWARLAGEAFSL 293 (410)
T ss_pred h---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCcc------------hHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 2 35777888888754 8999999999885432 57788887763 3488888888888
Q ss_pred HHHh
Q 014088 340 ILKA 343 (431)
Q Consensus 340 l~~~ 343 (431)
|.-.
T Consensus 294 ItG~ 297 (410)
T TIGR02270 294 ITGM 297 (410)
T ss_pred hhCC
Confidence 7643
No 83
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=8.4e-06 Score=81.00 Aligned_cols=225 Identities=15% Similarity=0.126 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhcCCCCCChh-hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-C
Q 014088 120 RNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-P 197 (431)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~ 197 (431)
..|+..|+.+..-.+-.... .--|++|.++++|+++-.+++.-...+...+..-++.....+++.++-..+++.|.. .
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 34555666655544333322 336899999999999999999988888888776666555557776766777777766 2
Q ss_pred --CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHH
Q 014088 198 --SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 275 (431)
Q Consensus 198 --~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 275 (431)
+++-+.-++.+|+.++.+.....+...+.+++...++.|.+++.+-+|..++-+|+.|=...++.+-.-.+.+..+.|
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 346778899999999998877778889999999999999885368899999999999988766655555667789999
Q ss_pred HHHHccCCHhHHHHHHHHHHHhcCCC---CHHHHHHH------------HHCCCh---HHHHhhcCCCCHHHHHHHHHHH
Q 014088 276 VNLLLNAEFEIKKEAAWAISNATSGG---SNEQIKFL------------VSQGCI---KPLCDLLNCPDPRIVTVCLEGL 337 (431)
Q Consensus 276 ~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~l------------~~~~~l---~~L~~ll~~~~~~v~~~al~~L 337 (431)
+.+|.++-++||..|+.||+.+..+. .+++.... .+..+. -.+..+++...+-++.....+|
T Consensus 648 ~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l 727 (1387)
T KOG1517|consen 648 ILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL 727 (1387)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999864 12222211 111112 1455566677777777776777
Q ss_pred HHHHHhh
Q 014088 338 ENILKAG 344 (431)
Q Consensus 338 ~~l~~~~ 344 (431)
..+....
T Consensus 728 s~~~~g~ 734 (1387)
T KOG1517|consen 728 SHFVVGY 734 (1387)
T ss_pred HHHHHhh
Confidence 6665443
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=6.6e-05 Score=72.98 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=150.0
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
++.+.-+...|+.+|++++.. .+...+.|-+.+++++.++-+|+.|+.|...+....++..+ .+++...
T Consensus 117 ~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~ 185 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFR 185 (866)
T ss_pred cCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHH
Confidence 455666777788888887754 34467889999999999999999999999999888777666 4567778
Q ss_pred HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc----cc----------chhhHHHHHHHHHHHhhc
Q 014088 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----QN----------YKKSIKKEACWTISNITA 257 (431)
Q Consensus 192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~----------~~~~v~~~a~~~L~nl~~ 257 (431)
.+|.+.+..|....+..+..+|..++.....+-+ +++.++..|+ .. +++-++..+++.|+-+..
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 8898888999999999999999876654443333 5555555553 11 167889999999888887
Q ss_pred CCHHHHHHHHH--------------hC--C-HHHHHHHHc-cCCHhHHHHHHHHHHHhcCCCCHHHHHH--------HHH
Q 014088 258 GNVNQIQAIIE--------------AG--I-IGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKF--------LVS 311 (431)
Q Consensus 258 ~~~~~~~~l~~--------------~~--~-i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~--------l~~ 311 (431)
++++....|-+ .| + .+.+..++. .++..+|..|+.+|+.+..+.. .+.++ .++
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVVQ 342 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhhc
Confidence 65554433321 00 1 111112221 2356788888888888877653 22222 111
Q ss_pred C--CC----hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 312 Q--GC----IKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 312 ~--~~----l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
. .. -..++++++.+|..++..|++.+..+....
T Consensus 343 ~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 343 QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 1 11 345788888889999999999888887543
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6e-05 Score=65.79 Aligned_cols=266 Identities=14% Similarity=0.170 Sum_probs=188.1
Q ss_pred HHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh----HHHHHHHHhCcHHHHHHhcCCC
Q 014088 122 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLRHP 197 (431)
Q Consensus 122 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~ 197 (431)
++.+|..|.+.... ........|.|-.-|..++..++.-+|..++.+..+.+ ..+..++..++++.++.++-.+
T Consensus 63 cVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 55666666554311 11223455666666777888999999999999887655 2334456789999999999999
Q ss_pred CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH--HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHH
Q 014088 198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD--LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 275 (431)
Q Consensus 198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 275 (431)
+.++...+...+..++.... ....++.+.....+-. +-... ++-+|......+..+..-+++...++..+|++..|
T Consensus 141 ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 99999999999999988654 5556777776665433 33333 67778888888888888889999999999999999
Q ss_pred HHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088 276 VNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGN 352 (431)
Q Consensus 276 ~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~ 352 (431)
..-++. ++.-|+.+++.....++... ...+++.+.|+++.+.+++.. .+|.-...++-...+++.+.......
T Consensus 219 eaElkGteDtLVianciElvteLaete--HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvs-- 294 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVS-- 294 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcC--
Confidence 888877 58889999999999998743 556777789999999999974 45555566777777766443322210
Q ss_pred CCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 353 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
....+..+. -+++...+..+..+++..+.|.+.+..+=+.-+.
T Consensus 295 ---eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 295 ---EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG 337 (524)
T ss_pred ---HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence 000122111 1344555566778888888888888766554443
No 86
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.43 E-value=7.4e-06 Score=61.74 Aligned_cols=154 Identities=10% Similarity=0.050 Sum_probs=122.8
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHH
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 307 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 307 (431)
.+..|+.-.....+.+.++....-|+|++.. |.+-..+.+.+++..+++.+..++..+++.++..|+|+|.. +...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHHH
Confidence 3455665555555788899988889999876 77788888999999999999999999999999999999975 47888
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088 308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387 (431)
Q Consensus 308 ~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 387 (431)
.+.+.+.++.++..++++...+...++..+..+...... .+..+.....++.+.+...+.+.+.+..|
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 889999999999999998888888777777655433222 35666666677788888777778888888
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
...++....
T Consensus 162 ~~fl~~~~~ 170 (173)
T KOG4646|consen 162 SAFLDKHVH 170 (173)
T ss_pred HHHHHhhcc
Confidence 888876653
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.42 E-value=2.7e-05 Score=78.70 Aligned_cols=267 Identities=16% Similarity=0.087 Sum_probs=173.5
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC----ChHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKI 178 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~ 178 (431)
+..+...++.-.....+..|+..|..++... ........++|.++.+++++...||..|+.+|..+... ++...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4555555544446678889999999998873 34455678999999999999999999999999876532 22222
Q ss_pred HHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChh---hhHHHhhc-------------------------CCh
Q 014088 179 QAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM---QTQCIINH-------------------------QAL 229 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~-------------------------~~l 229 (431)
..+.+ =++|.|-.++.+ ....+|..-+.+|+.|+...-. ..+.+-.. .+-
T Consensus 502 niF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 502 NIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred hhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 32333 467778788777 5556777777777777632110 00000000 112
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 014088 230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL 309 (431)
Q Consensus 230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 309 (431)
.....++.++ ++-||..-+..|+-||.-- .+.=.+.-+++.|+..|++.++.+|..-...|.-++..-.+. -
T Consensus 581 ~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FF---Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r----s 652 (1431)
T KOG1240|consen 581 QMVSSLLSDS-PPIVKRALLESIIPLCVFF---GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR----S 652 (1431)
T ss_pred HHHHHHHcCC-chHHHHHHHHHHHHHHHHh---hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee----e
Confidence 2334445555 5666766666666665310 000011235888999999999999877777766554322111 1
Q ss_pred HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 014088 310 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389 (431)
Q Consensus 310 ~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~ 389 (431)
++..+++.|.+-+...++.+...|+++|..+++.+--.+. .=...++.+..++.|||.=+|+.+..
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------------~v~~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------------AVKDILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------------HHHHHHHhhhhheeCchHHHHHHHHH
Confidence 3455788888899999999999999999999987653321 11233555677899999999999988
Q ss_pred HHHHh
Q 014088 390 ILETY 394 (431)
Q Consensus 390 ~l~~~ 394 (431)
+|...
T Consensus 719 iI~~~ 723 (1431)
T KOG1240|consen 719 IIAAI 723 (1431)
T ss_pred HHHHH
Confidence 87553
No 88
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.9e-05 Score=73.72 Aligned_cols=251 Identities=15% Similarity=0.146 Sum_probs=160.5
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh------HHHH
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN------DKIQ 179 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~------~~~~ 179 (431)
+..+. .+.|..++..|+..|..|.... ..-.-.....++++.+.+..||..|+..+.-.+.-.+ ..-.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 44444 6777888888888888777642 1123456778899999999999998666654432221 1111
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh--hc
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA 257 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 257 (431)
.+.+ .++..+...+++.+..||..|.++|+.+-.-+++.....++.+++..+-..=. . .+......++- +.
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~----a--hkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT----A--HKRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh----c--ccchHHHHhcCCccc
Confidence 2333 57788889999999999999999999987655555554444333332211110 0 01111111111 11
Q ss_pred -----------CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088 258 -----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326 (431)
Q Consensus 258 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 326 (431)
...+....++.+|.--.++.-+.++-.+||..|...++.++.... ..... .++.|+++++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP-~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP-GFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-CcHHH-----HHHHHHHHhccHH
Confidence 112223455667777777777888888999999999999998653 22222 5889999999888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 327 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 327 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
..++..|+.+|..+.....-. ...++.+..-+.+.++++|+....+|..
T Consensus 424 ~~VRL~ai~aL~~Is~~l~i~------------------eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLAIR------------------EEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHheec------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 899999999999887763321 2234445555666677777776666654
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.41 E-value=7.7e-06 Score=82.43 Aligned_cols=300 Identities=16% Similarity=0.128 Sum_probs=189.8
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC---CChHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG---DSPKCRDL 96 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~ 96 (431)
.+..++..-...+.+..|+..|..++....+. ..=..++|.++.++.++...+|..|+.+|..+.. +-+..-..
T Consensus 426 ~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 426 VLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 34445554456788999999999888633221 1112589999999999999999999999888753 22222334
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088 97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
++..-.+|.|-.++..+....+|..-+.+|..|+... ... .....-.....++++.+.+ .... .+.+.
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--~rF-le~~q~~~~~g~~n~~nse-------t~~~--~~~~~ 570 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--YRF-LELTQELRQAGMLNDPNSE-------TAPE--QNYNT 570 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--HHH-HHHHHHHHhcccccCcccc-------cccc--cccch
Confidence 4444566777777744455667777777788877641 000 0011111122233433333 0000 01112
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 256 (431)
..+.+.+ ++-+.+..++.++++-|++..+..|.-||...... --+.-+++.|+-.|.+. ++.+|..-...+.-++
T Consensus 571 ~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvs 645 (1431)
T KOG1240|consen 571 ELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVS 645 (1431)
T ss_pred HHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhccceE
Confidence 2232332 44455667778888889999899888888643311 12335688899999988 9999988777777665
Q ss_pred cC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088 257 AG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 335 (431)
Q Consensus 257 ~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~ 335 (431)
.. .. .-+++.++|.|.+-|.++.+.|...|+.+|..|+..+- .++..-.++++....++-.++..++..++.
T Consensus 646 i~VG~----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 646 IFVGW----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred EEEee----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCchHHHHHHHHH
Confidence 41 01 11244578889999999999999999999999987652 222222235556666777899999999999
Q ss_pred HHHHHHHhhhh
Q 014088 336 GLENILKAGEA 346 (431)
Q Consensus 336 ~L~~l~~~~~~ 346 (431)
.|..+.+.-..
T Consensus 719 iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 719 IIAAIARQLSA 729 (1431)
T ss_pred HHHHHHhhhhh
Confidence 88877665443
No 90
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.4e-05 Score=77.44 Aligned_cols=308 Identities=17% Similarity=0.158 Sum_probs=177.0
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
++.|.++. +.. ..+-+++.-+-.-+.+.+...++.. .+++..+++=.+++++.+|..|++.++.+-.+.
T Consensus 49 slF~dvvk-----~~~-T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~ 117 (734)
T KOG1061|consen 49 SLFPDVVK-----CMQ-TRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK 117 (734)
T ss_pred hhhHHHHh-----hcc-cCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH
Confidence 35555555 443 4456777777777778777555433 246677777777899999999999988875432
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
.... ...++.+.+ ++.++.+|+.++.++.++-.. ........|+++.|..++.++++.|..+|+.+|..+
T Consensus 118 --i~ey-----~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 118 --ITEY-----LCDPLLKCL-KDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEI 187 (734)
T ss_pred --HHHH-----HHHHHHHhc-cCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1122 467888888 788999999999999888766 344555679999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
....++.-........+..++..+..-+.--+...+.++.+.....+.... .++..+...|.+. +..+...+..
T Consensus 188 ~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~-n~avvlsavK 261 (734)
T KOG1061|consen 188 HESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHA-NSAVVLSAVK 261 (734)
T ss_pred HHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccC-CcceEeehHH
Confidence 866542111111112223333333322222223333333333222221111 2345556666666 6666666666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC----------------HH-----HHH--
Q 014088 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----------------NE-----QIK-- 307 (431)
Q Consensus 251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----------------~~-----~~~-- 307 (431)
++.++...-++ ....+-..+-++++.++.... +++..|++-+.-+..... |- ...
T Consensus 262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil 339 (734)
T KOG1061|consen 262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEIL 339 (734)
T ss_pred HHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHH
Confidence 66666543222 222222234445555554444 444333333333322211 00 000
Q ss_pred -HHHH-CC---ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 308 -FLVS-QG---CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 308 -~l~~-~~---~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
.+.. .+ ++.-+.++-...|.+....+.++++++....++.
T Consensus 340 ~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 340 IELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred HHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence 1111 11 2333444444567888899999999998766553
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=5.5e-06 Score=78.43 Aligned_cols=246 Identities=15% Similarity=0.138 Sum_probs=155.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC------CCC
Q 014088 64 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP------QPL 137 (431)
Q Consensus 64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~~ 137 (431)
+..+..+.+..++.+|+..|..+..... ..+. .....++.+ .+.+..+|..|+.+++-.....| ...
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 5555566667777777777666654221 1111 234456666 67788999988766665554432 122
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC--
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-- 215 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-- 215 (431)
.......+..+...+++.+..||..|..+|+.+-....+.+....+..++..+-+.-.. .-+-..+..=+.++.+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCcc
Confidence 23346778888999999999999999999998876666655555554444432221100 0011111111111211
Q ss_pred ---------ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088 216 ---------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286 (431)
Q Consensus 216 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 286 (431)
.+.....++.+|.-..++.-|.+. -.+||..|+..++.|+..+|..... .+..|+++++++...|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHH
Confidence 123344567778888899999888 8999999999999999977765443 4668999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 014088 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 332 (431)
|..|+.+|..++.+.. +++..++.+...+...++++++.
T Consensus 427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999876531 12223444444444444444443
No 92
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00028 Score=73.33 Aligned_cols=313 Identities=19% Similarity=0.140 Sum_probs=175.2
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 91 (431)
++|++.+ ..-.+++.+|..-..+=..+..++...-+... ..++.-|+.-|.+..+.+|+.++.+|..+....+
T Consensus 999 LIPrLyR------Y~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 999 LIPRLYR------YQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHhh------hccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 5666666 56677777766555544455555444444433 2577788888888999999999999999997665
Q ss_pred H--HHHHHHHcCChHHHHHHhccccchhHHHH---HHHHHHHhhcCC-C----CCChhhHhhhHHHHHHh-hcCCChHHH
Q 014088 92 K--CRDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-P----QPLFEQTRPALPALERL-IHSNDDEVL 160 (431)
Q Consensus 92 ~--~~~~i~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-~----~~~~~~~~~~i~~L~~l-L~~~~~~v~ 160 (431)
. ..+.+.+ ....+.+.+ ++-.+.+|.. ++.+|+.++-.. . ..-......++|.|+.- +-+.-+++|
T Consensus 1072 ~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr 1148 (1702)
T KOG0915|consen 1072 FDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVR 1148 (1702)
T ss_pred hHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHH
Confidence 3 2222222 334444444 4445666665 556666666443 1 11122234455555431 125668999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHH-HHHHHhHhhcC-ChhhhHH----------------
Q 014088 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-ALRTVGNIVTG-DDMQTQC---------------- 222 (431)
Q Consensus 161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~l~~l~~~-~~~~~~~---------------- 222 (431)
..++.++..+++..+.... -.-..+++.|++....-.+.+.-. ++++ .+.-.. -+..+..
T Consensus 1149 ~~si~tl~dl~Kssg~~lk-P~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELK-PHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHhchhhhc-chhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 9999999999987765433 122256677777766655544322 3333 111110 0011111
Q ss_pred ----HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 223 ----IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 223 ----~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
-+-...+|.+.++++.+..-..|..++..+.-|+........... ...+..++..+.+.+..+++....+.+.++
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 111234555666665554455556666555555431111011111 124556666667778999999999999999
Q ss_pred CCCCHHHHHHHHHCCChHHHH-hhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 299 SGGSNEQIKFLVSQGCIKPLC-DLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 299 ~~~~~~~~~~l~~~~~l~~L~-~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
....+++.+.+++ .+. .++.. ++.....++..+.++..+
T Consensus 1306 k~Ss~dq~qKLie-----~~l~~~l~k-~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIE-----TLLADLLGK-DESLKSISCATISNIANY 1345 (1702)
T ss_pred hcCChHHHHHHHH-----HHHHHHhcc-CCCccchhHHHHHHHHHh
Confidence 8888877777543 333 33332 222224555555554443
No 93
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00082 Score=58.92 Aligned_cols=277 Identities=13% Similarity=0.066 Sum_probs=179.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh--HHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 134 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~--~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 134 (431)
+..|.|-.-|..++..++..++..++.+..+.+ ... ..++..+.++.++..+ -.+|.++...|...+..++..+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence 345556666677888999999999998886654 222 2345778888888888 67788999999999999988753
Q ss_pred CCChhhHhhhHH--HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhH
Q 014088 135 QPLFEQTRPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN 211 (431)
Q Consensus 135 ~~~~~~~~~~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~ 211 (431)
.......+.... .+..+....+.-+|...+..+..+.+-.+........+|++..|..-+.. .+.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 222222233322 12233333455677888888888888887777777788999888877776 677788889999888
Q ss_pred hhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHHHHHHHH----HHHhhcC--CHHH-HHHHHHhCCHHHHHHHHccCC
Q 014088 212 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT----ISNITAG--NVNQ-IQAIIEAGIIGPLVNLLLNAE 283 (431)
Q Consensus 212 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~----L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~ 283 (431)
++... ..++.+.+.++++.+.+++.... ++--+-.++.. +++.+.. +++. +..++- .+....+++...+
T Consensus 241 Laete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEmnD 317 (524)
T KOG4413|consen 241 LAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEMND 317 (524)
T ss_pred HHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhcCC
Confidence 88643 34556668899999999886441 23333334433 3333321 2221 222222 3566677788889
Q ss_pred HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCC--hH-HHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 284 FEIKKEAAWAISNATSGGSNEQIKFLVSQGC--IK-PLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 284 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--l~-~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
+.....|+.+++.+-++. +....+...|- .+ .+.+..+.....-+..++.+|.++.
T Consensus 318 pdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred chHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 999999999999998764 45555555553 22 2334444332223344455555543
No 94
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00035 Score=67.94 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=182.1
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
|.++|.+. ....+..|..-|.++.....+.. ...|.+++...+.+.+++...---|...+...++. .+.
T Consensus 40 L~~lLdSn-kd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--ALL-- 108 (968)
T KOG1060|consen 40 LKQLLDSN-KDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--ALL-- 108 (968)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--eee--
Confidence 55566644 45777777776666554344432 46788999999999999998888888888776653 111
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhh-hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
.|..+-+-| .++++.+|..|+++|+.+--. ...+ .+-.+-++..+..+-||+.|+.++-.+-+-+++...
T Consensus 109 -SIntfQk~L-~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 -SINTFQKAL-KDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred -eHHHHHhhh-cCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 467777888 889999998888888765222 1112 223444566678899999999999988766655444
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG- 258 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~- 258 (431)
.+++.+-.+|.+.++.|.-.|+.++..+|... .+ ++. +-...+.++|.+- ++-=+.....+|..-|+.
T Consensus 180 -----qL~e~I~~LLaD~splVvgsAv~AF~evCPer---ld-LIH-knyrklC~ll~dv-deWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 -----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LD-LIH-KNYRKLCRLLPDV-DEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred -----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HH-Hhh-HHHHHHHhhccch-hhhhHHHHHHHHHHHHHhc
Confidence 34466677888899999999999998887532 22 222 4567788888766 555566666677666642
Q ss_pred --CHHHHHHHH-HhC------------------------CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014088 259 --NVNQIQAII-EAG------------------------IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 311 (431)
Q Consensus 259 --~~~~~~~l~-~~~------------------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 311 (431)
.|....... +.| ++...-.++.+.++.|...++.++..++-.. +..
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~~~---- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---QVT---- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---HHH----
Confidence 221100000 000 1222333556667888888888888886532 222
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
.+++.|+++|.+ +++++..++..+..+...
T Consensus 322 -~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 322 -KIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred -HHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 246677776654 445555556666555543
No 95
>PF05536 Neurochondrin: Neurochondrin
Probab=98.33 E-value=0.00013 Score=71.27 Aligned_cols=237 Identities=18% Similarity=0.163 Sum_probs=167.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH---HHHHHHHcCChHHHHHHhccc------cchhHHHHHHHHHHHhh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---CRDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC 130 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~ 130 (431)
.++.-+.+|+..+++-+-.++..+.+++...+. .++.+.++=+...+-++|... +....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 456677888887777788888888888865543 234566766677777887542 34567778999999999
Q ss_pred cCCCCCChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHH
Q 014088 131 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209 (431)
Q Consensus 131 ~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l 209 (431)
..+.........+.+|.+++++.+.+. ++...++.+|..++..+.. .+.+.+.|.++.|.+.+.+ .+.....++.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 976555556667899999999987776 9999999999999966554 4668889999999999887 566788899999
Q ss_pred hHhhcCChhhhHH---HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH-H----HHHHHhCCHHHHHHHHcc
Q 014088 210 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-I----QAIIEAGIIGPLVNLLLN 281 (431)
Q Consensus 210 ~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~----~~l~~~~~i~~L~~ll~~ 281 (431)
.+++......... -.-..+++.+.+.+... ....+.+++..|+++-...+.. . ..-+-..+...+..++++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9987654311110 00113456666666666 6777888999999887754211 1 111223345566667766
Q ss_pred C-CHhHHHHHHHHHHHhcC
Q 014088 282 A-EFEIKKEAAWAISNATS 299 (431)
Q Consensus 282 ~-~~~v~~~a~~aL~~l~~ 299 (431)
. .+.-|..++.....+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5 66777777777766654
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.32 E-value=1.2e-06 Score=52.96 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.4
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 48 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
++++++.+++.|++|.|+++|+++++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.32 E-value=0.00011 Score=67.90 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=169.0
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhh
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~ 219 (431)
....+.+..++-+++.+++..+.+++.++..+.. ..+.+.+.++--.++..|..+. ..=|.+|++.+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4455555555545559999999999999987764 4566777776666666676543 335678999999887653211
Q ss_pred hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
..+..+++..++.+..+. ++..|..|..+|+.++..+|+ .+...|++..|.+.+.++..++.+..+.++..+..
T Consensus 103 --~~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 103 --KEIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred --ccCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 123457888999999998 999999999999999998787 45678999999999988877788899999999987
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCC-------CCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHH
Q 014088 300 GGSNEQIKFLVSQGCIKPLCDLLNC-------PDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 370 (431)
Q Consensus 300 ~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (431)
.. ..++++...--++.+..-+.+ ++. +-...+..++..+++.....= .-......+++
T Consensus 177 ~p--~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-----------~l~~~~~~~lk 243 (371)
T PF14664_consen 177 SP--RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-----------YLSMNDFRGLK 243 (371)
T ss_pred Cc--chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-----------eeecCCchHHH
Confidence 65 444544332224444433321 122 355667788888887664421 11112224677
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 371 KIENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 371 ~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
.|...+..+++++++...+++-..|.-...
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 788889999999999999999888875543
No 98
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00044 Score=67.33 Aligned_cols=259 Identities=18% Similarity=0.159 Sum_probs=158.3
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
......+-+|..|+.+|-++-.-.++...+ ++..+-.+|.+.++.+.-.|+.++-.+|-+.- +.+. +-..
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLIH--knyr 220 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLIH--KNYR 220 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHhh--HHHH
Confidence 344566788888888888887656666554 34566678888889999999999998885432 2222 2456
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC----------------------------hhhHhhhHHHHHHhhcCC
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIHSN 155 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~i~~L~~lL~~~ 155 (431)
.++++|.+-.++ =+......|..-|+.. +.+. -....-++...-.+|.+.
T Consensus 221 klC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~ 299 (968)
T KOG1060|consen 221 KLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR 299 (968)
T ss_pred HHHhhccchhhh-hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence 677777332222 2334444454445543 2110 011123445555677888
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-----------
Q 014088 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII----------- 224 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------- 224 (431)
++.+...++.++..++-... .. .++..|+++|+++ ..++...+..+..++...+......+
T Consensus 300 n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~ 371 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT 371 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence 99999999999999884432 12 4467788877654 35666666666666644332211111
Q ss_pred --------------hcCC----hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088 225 --------------NHQA----LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286 (431)
Q Consensus 225 --------------~~~~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 286 (431)
+..- ++-+...+++. +..+...+..+|+.++...... ...++..|+.++.+.+..|
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~V 445 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELV 445 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccchh
Confidence 1111 12222223344 4467777888888887642222 2235777899999888899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH
Q 014088 287 KKEAAWAISNATSGGSNEQIKF 308 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~ 308 (431)
..+++..|..+......+..+.
T Consensus 446 v~eaV~vIk~Llq~~p~~h~~i 467 (968)
T KOG1060|consen 446 VAEAVVVIKRLLQKDPAEHLEI 467 (968)
T ss_pred HHHHHHHHHHHHhhChHHHHHH
Confidence 9999999999988765555444
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00082 Score=67.55 Aligned_cols=328 Identities=13% Similarity=0.144 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHh----CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
+-...++.+|.|+...+++....+.. -|..+.+..++.. .++.++..|+.++..+.... ++...+...+.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHH
Confidence 34567889999999888865443332 3778888888876 78899999999998887655 467778888888888
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCC---h-HHHHHH
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGT---N-DKIQAV 181 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~---~-~~~~~~ 181 (431)
+.+| ++ -+..++.++.+|..|+............|.+..+..++- ++.+..|..++..++.+..++ + ..+- +
T Consensus 1819 L~lL-HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT-L 1895 (2235)
T KOG1789|consen 1819 LTLL-HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT-L 1895 (2235)
T ss_pred HHHH-hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee-h
Confidence 8888 33 578899999999999988654455555677777776654 567889999999999887432 1 1110 1
Q ss_pred HH---h-------CcHHHHHHhcCC--CCcc------cHHHHHHHHhHhhcC-------C-------hh-----------
Q 014088 182 IE---A-------GVCPRLVELLRH--PSPS------VLIPALRTVGNIVTG-------D-------DM----------- 218 (431)
Q Consensus 182 ~~---~-------~~i~~L~~ll~~--~~~~------v~~~a~~~l~~l~~~-------~-------~~----------- 218 (431)
++ . +.-+..+..+.. ++|+ .+...-..+..++.. + ++
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 10 0 111333333322 2222 222222233333310 0 00
Q ss_pred ------hhHHHh-------------hcCChHHHHHHhcccc-hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHH
Q 014088 219 ------QTQCII-------------NHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 278 (431)
Q Consensus 219 ------~~~~~~-------------~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 278 (431)
..+.++ -.++++.+.++|..+. ....-.--..++..|.+.-|.....+-.-|.+|+++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 001111 1133555556664331 12222223334445555556666677678999999999
Q ss_pred HccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch
Q 014088 279 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 358 (431)
Q Consensus 279 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 358 (431)
+...+..+-..|+++|..++.+. -....+.+...+..++..++. .+...-.|+++|.+++......-
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eL---------- 2122 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGEL---------- 2122 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHH----------
Confidence 98877777789999999998864 567777777778888877763 34455589999999998655432
Q ss_pred HHHHHHhhccHHHHHHhhc
Q 014088 359 FAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 359 ~~~~l~~~~~~~~l~~l~~ 377 (431)
+.+.+ ..|.++-|..|+.
T Consensus 2123 VAQ~L-K~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2123 VAQML-KCGLVPYLLQLLD 2140 (2235)
T ss_pred HHHHh-ccCcHHHHHHHhc
Confidence 34444 4888888877754
No 100
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.28 E-value=6.1e-05 Score=65.44 Aligned_cols=225 Identities=14% Similarity=0.168 Sum_probs=152.3
Q ss_pred ChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHH-HcCChHH
Q 014088 30 FGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMP 105 (431)
Q Consensus 30 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~ 105 (431)
++-.+.-|++|+.++.. .++.|.... +...-..++..+++ ....++-..+.+++.++..+. +.+.+- .-..+..
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~d 239 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHH
Confidence 45678888899999987 466666544 44566778888876 668899999999999876543 332221 1235667
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hHhhhHHHHHHhh-cC--CChHHHHHHHHHHHHhccCC------
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLI-HS--NDDEVLTDACWALSYLSDGT------ 174 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL-~~--~~~~v~~~a~~~L~~l~~~~------ 174 (431)
++++.+....+.+.+.++.++.|++...|...+. ...+-+...++.| +. +|.+++...-..=..+..+.
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777777778899999999999999854332222 2233233344444 32 35555443322222121110
Q ss_pred ---------------h---------HHHHHHHH--hCcHHHHHHhcCCCCcc-cHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088 175 ---------------N---------DKIQAVIE--AGVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQTQCIINHQ 227 (431)
Q Consensus 175 ---------------~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (431)
| .+...+.+ ..++..|..+++...+. ....|+.-++.+++..++....+.+.|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 0 11222322 24678888999887666 666789999999998888888888999
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
+=..+++++.++ +++++-+|+.++..+..
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 999999999999 99999999998876643
No 101
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00011 Score=76.29 Aligned_cols=353 Identities=14% Similarity=0.142 Sum_probs=195.9
Q ss_pred hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC--CCh
Q 014088 15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG--DSP 91 (431)
Q Consensus 15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~ 91 (431)
..+...+...+ .+++|..|..++-.|..+..+....+.... ...+...+..+|.+.++-+|..|.+.|+-+-. +.+
T Consensus 817 ~~~~~~l~~~~-~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 817 TIILKLLDTLL-TSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 33333334444 467788887665555544432222222222 22455788888888887777777766654431 111
Q ss_pred HHHHH------------------------HHHcCC----------------------------hHHHHHHhccccchhHH
Q 014088 92 KCRDL------------------------VLSNGA----------------------------LMPLLAQFNEHAKLSML 119 (431)
Q Consensus 92 ~~~~~------------------------i~~~~~----------------------------i~~l~~~l~~~~~~~~~ 119 (431)
.++. +++.|. +-.++++-.++..+.-+
T Consensus 896 -~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 896 -LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred -hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence 1111 111111 11112222222233334
Q ss_pred HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc
Q 014088 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 199 (431)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 199 (431)
.-|+.-+..++.............++|.|.+.=.+++..|+.....+...+..+.......... .+++.|+.-+.+..+
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEW 1053 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhH
Confidence 4455555556555433333445667777777777889999988888877777765554443333 678888888888999
Q ss_pred ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH---HHHHHHhhcC-----CHHHHHHHHHhCC
Q 014088 200 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA---CWTISNITAG-----NVNQIQAIIEAGI 271 (431)
Q Consensus 200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~~-----~~~~~~~l~~~~~ 271 (431)
.+|+.+|-++..+..+.+.....-.-..+...+...+++- .+.||+.| +.+|+.++.. +....+..++ .+
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~i 1131 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEALD-II 1131 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HH
Confidence 9999999999999988652211111113455566666665 67777754 5555655531 1111222222 14
Q ss_pred HHHHHH--HHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH-HHHHHHHHHHhh-hhh
Q 014088 272 IGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILKAG-EAE 347 (431)
Q Consensus 272 i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~-al~~L~~l~~~~-~~~ 347 (431)
+|.|++ ++ +.-.++|.-++.++..++...+......+.+ .++.|.+..+.-++.+..+ ++++ .++-... +..
T Consensus 1132 LPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~ 1207 (1702)
T KOG0915|consen 1132 LPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTL 1207 (1702)
T ss_pred HHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH--HHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHH
Confidence 454443 12 3457899999999999998776544444333 6777788777666665543 3333 2221111 111
Q ss_pred hhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088 348 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387 (431)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 387 (431)
-.+.-+..-.++.|..+.++-+..+-+.-
T Consensus 1208 -----------R~s~aksspmmeTi~~ci~~iD~~vLeel 1236 (1702)
T KOG0915|consen 1208 -----------RASAAKSSPMMETINKCINYIDISVLEEL 1236 (1702)
T ss_pred -----------HHhhhcCCcHHHHHHHHHHhhhHHHHHHH
Confidence 12233344456667777666665554433
No 102
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.7e-05 Score=71.70 Aligned_cols=322 Identities=14% Similarity=0.070 Sum_probs=197.3
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-- 135 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-- 135 (431)
.+++++++..+.+++..+|..|+..+.|++.-... .....-..+...+.++. .+++..+ +.++..+-.+.++...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~kls-aDsd~~V-~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLS-ADSDQNV-RGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHh-cCCcccc-ccHHHHHHHHHHHhcccc
Confidence 46888999999999999999999999999843211 01111112334444544 4444443 4566667666666522
Q ss_pred CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
.......+++|.+-.-+...++..|...+.-+..+-..++-..-. .-..+++.|...|.+++.+++..+=.+++++...
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 223445778888888888889999998888887776555422111 1126788889999999999998777767666432
Q ss_pred ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh-HHHHHHHH-
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKKEAAWA- 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-v~~~a~~a- 293 (431)
-......+--...++.++..+.++ ++.++..|..-+..+..-.+... ...-+|++..++.++.+.... ++..+...
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HhcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 111101111225678888899888 89999988777777766322211 112345666777777665443 44333322
Q ss_pred --HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH
Q 014088 294 --ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 371 (431)
Q Consensus 294 --L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 371 (431)
+..+.. ++.....+.-...++.+...++.+..+.+-.++.-+..+....... ... .....+..
T Consensus 317 ~~l~~l~s--~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-----------l~~--h~~~if~t 381 (675)
T KOG0212|consen 317 GLLLKLVS--SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-----------LLV--HNDSIFLT 381 (675)
T ss_pred HHHHHHHh--hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-----------hhh--hccHHHHH
Confidence 222222 1111111222346888888888888888888887777776554321 111 11223444
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 372 IENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 372 l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
|..-+.+++.+|-.++..++.....++.+
T Consensus 382 LL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 382 LLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 44446667778888888888887776654
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.21 E-value=3.5e-06 Score=50.99 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.2
Q ss_pred CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
+++.++.+++.|++|.|++++.+++.+++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999863
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.20 E-value=2.2e-05 Score=68.35 Aligned_cols=186 Identities=17% Similarity=0.230 Sum_probs=116.6
Q ss_pred CCCCcccHHHHHHHHhHhhcCC--hhhhHHHhh--cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 014088 195 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270 (431)
Q Consensus 195 ~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 270 (431)
.+.+++.+..++.-|..++.++ ......+.. ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 5577888999999999998766 222222221 15667788888888 8899999999999998742333444444 3
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 350 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 350 (431)
++|.|++.+.++..-++..|..+|..++.... ....+ ....+....+++++.++..++..+..++.........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 78999999999988999999999999998764 11110 1556667788999999999999999998876621110
Q ss_pred CCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 351 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
+.....-....+.+....++++++||+.|..++..|+.
T Consensus 169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 11111012346678888999999999999988877654
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.18 E-value=0.0006 Score=63.19 Aligned_cols=209 Identities=25% Similarity=0.305 Sum_probs=145.0
Q ss_pred HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
++.+. ++++.++..+.+.++.+.. .-.++.+..++.+.++.+|..+..+|+.+-. +.
T Consensus 49 ~~~l~-~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~--------- 105 (335)
T COG1413 49 LKLLE-DEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--PE--------- 105 (335)
T ss_pred HHHHc-CCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh---------
Confidence 33444 4467888888888766654 2478999999999999999999998888732 22
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCCh------------HHHHHHHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDACWALSY 169 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~v~~~a~~~L~~ 169 (431)
.++.++..+..+.+..++..+.++|..+-.. ..+..++..+++... .++..+...+..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 5788899995578999999999999998665 346667777776552 234444444433
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088 170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249 (431)
Q Consensus 170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 249 (431)
+.. ...++.+...+......++..+..+++.+...+ ..+.+.+.+.+.+. +..+|..++
T Consensus 176 ~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~ 234 (335)
T COG1413 176 LGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAAL 234 (335)
T ss_pred cCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHH
Confidence 321 134566777777777788888888888776644 23456677777777 888888888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
.+++.+-.. ..++.++..+...+..++..+...+.
T Consensus 235 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 235 LALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 877776442 13455666677776666665555554
No 106
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.17 E-value=1.9e-05 Score=59.65 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=108.6
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
.+..|+.-.....+.+.++....-|.|++.++..........++..++..+...+..+...++..|+|+|-+.. ....+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHHH
Confidence 46677777777889999999999999999987666666667899999999999999999999999999997764 45668
Q ss_pred HHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088 182 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 235 (431)
Q Consensus 182 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 235 (431)
.+.++++.++..++++...+...++.++..++......+..+....++..+..+
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 888999999999999988889999999999988776666655554444443333
No 107
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00026 Score=69.15 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=163.9
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH---HHHHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHh
Q 014088 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNI 212 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l 212 (431)
..+...+.+|+..+.+-+-.++..+.++..+.+.. .+.+.+.=+.+.+-++|++ +....+.-++.++..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45778889999888777888888888998876532 2235555456777778776 2244667788888888
Q ss_pred hcCChhhh-HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHH
Q 014088 213 VTGDDMQT-QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 291 (431)
Q Consensus 213 ~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 291 (431)
+...+-.. ..++ +.+|.|++.+.+..+..+...++.+|..++. .++..+.+++.|.++.|++.+.+ .+.....|+
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 87433111 1122 5689999999888334999999999999994 58899999999999999999988 556788899
Q ss_pred HHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh--hhcCCCCCcchHHHHHHhhc
Q 014088 292 WAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE--KNMGNTGGVNLFAQAIDDAE 367 (431)
Q Consensus 292 ~aL~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 367 (431)
.++.+++.....+....- .-..++..+...+...+...+...+..|..++...+.. +....+.+ ...+
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W----~~~l---- 232 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKW----LSDL---- 232 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhh----HHHH----
Confidence 999998775542222110 01134566666666666666777899999998877321 11111111 1222
Q ss_pred cHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088 368 GLEKIENL-QSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 368 ~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
..-|..+ .+...++-|..|..+...+.+-
T Consensus 233 -~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 233 -RKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2224444 5677888888887777666553
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=0.00024 Score=70.85 Aligned_cols=335 Identities=12% Similarity=0.060 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 110 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l 110 (431)
..+|+.|...+.++...-.... =..+.+.+.+++..++++..++.........++..-.. .......+++....+
T Consensus 290 dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 290 DSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL 364 (759)
T ss_pred hhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh
Confidence 4566666555555543111000 11123455555555555555555544444444321100 111112344455555
Q ss_pred ccccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 014088 111 NEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 188 (431)
Q Consensus 111 ~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 188 (431)
.+...+.+..++.-...++.... ..........+|.+-.+..+.+..++...+..+..+..-.+. ...+ ....+
T Consensus 365 -~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp 440 (759)
T KOG0211|consen 365 -KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLP 440 (759)
T ss_pred -cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccCh
Confidence 44445555555554444444332 122223355678888888888888888887777766533221 1011 14566
Q ss_pred HHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088 189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 268 (431)
Q Consensus 189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 268 (431)
.++..+++..+.++......+..+-..++..-........++.+..+-... ..++|.+..+.+-.++.... ..+.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~ 516 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFD 516 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhh
Confidence 777788888899999988877666555554434445557788888888777 89999999999988876311 23333
Q ss_pred hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 014088 269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK 348 (431)
Q Consensus 269 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 348 (431)
...-+.+...+.+....++..|...+..++...+.+. .....++.+......++...+...+.++.-+.....+.
T Consensus 517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e- 591 (759)
T KOG0211|consen 517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE- 591 (759)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-
Confidence 3344555556677778999999999988876443111 12234666666666666777888888888666554322
Q ss_pred hcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 349 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
+.....++.+..+.+++.++||-.+.+.+..+...
T Consensus 592 --------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 592 --------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred --------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 33455678888999999999999998888776553
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00012 Score=68.69 Aligned_cols=276 Identities=15% Similarity=0.076 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 110 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l 110 (431)
..++..+++.++.++..+ ....+++ ..+..|-.+|++.....|-.|+++|..++...|. .+.. +-+.+-.++
T Consensus 278 emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~---kv~v--cN~evEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ---KVSV--CNKEVESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc---eeee--cChhHHHHh
Confidence 467777777777776533 1122221 3466677777777777788888888888765553 1111 112222333
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088 111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 190 (431)
Q Consensus 111 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 190 (431)
.+.+..+--+|. ..|.+..........-..++.+++=+.++-.-+...|++. ++-.-+.... ..+..|
T Consensus 350 -sd~Nr~IstyAI---TtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rs---Lsl~Fp~k~~-----s~l~FL 417 (898)
T COG5240 350 -SDENRTISTYAI---TTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRS---LSLLFPSKKL-----SYLDFL 417 (898)
T ss_pred -hcccccchHHHH---HHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHH---HHhhCcHHHH-----HHHHHH
Confidence 344443333333 3333332222222222223333332323323333333333 3333332222 122333
Q ss_pred HHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088 191 VELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269 (431)
Q Consensus 191 ~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 269 (431)
...| +.+..+.+..++.++..+....+...+ .++..|...+.+.+-+++....+..||.=....+.- .
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P------~ 486 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP------G 486 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc------c
Confidence 3333 334556667777777777665544433 234455666655433444333333333322111110 0
Q ss_pred CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
..+..+..-+.-++.-+|..|+.+|..++.+.+... ....+...|.++++..|.+++..|..++.++-
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 124445554555577899999999999987664222 22335667788999999999999998888875
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.12 E-value=0.0009 Score=62.03 Aligned_cols=187 Identities=23% Similarity=0.314 Sum_probs=142.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
..++.+.+++.+++..++..+.+.++.+-.. ..++.+...+ .+.++.++..+..+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELL-SDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHh-cCCCHHHHHHHHHHHHccCCh------
Confidence 4688999999999999999999997776321 2577888888 788889999999988876543
Q ss_pred hhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc------------ccHHHH
Q 014088 139 EQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP------------SVLIPA 205 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~v~~~a 205 (431)
..++.++.++. +.+..+|..+.++|+.+-... .+..++..+.+... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 57888888888 689999999999998875432 24555666655441 244445
Q ss_pred HHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088 206 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 285 (431)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 285 (431)
...++.+- +...++.+.+.+.+. ...+|..|..+|+.+...+ ..+.+.+...+.+++..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 54444432 234578899999888 8899999999999998764 23567788888999999
Q ss_pred HHHHHHHHHHHhcC
Q 014088 286 IKKEAAWAISNATS 299 (431)
Q Consensus 286 v~~~a~~aL~~l~~ 299 (431)
++..++.+++.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999998754
No 111
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.12 E-value=0.00059 Score=65.21 Aligned_cols=297 Identities=16% Similarity=0.093 Sum_probs=177.9
Q ss_pred HHHHHHhhcCCCCCChhhHhhhHHHHHHhh----------cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088 123 TWTLSNFCRGKPQPLFEQTRPALPALERLI----------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 192 (431)
Q Consensus 123 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 192 (431)
+.+|..++++............+..|.++- ...+.++...|+.||+|+....+...+.+.+.|..+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 445666666654444444455666666655 2457899999999999999998888888999999999999
Q ss_pred hcCCC-----CcccHHHHHHHHhHhhcCChhhhHHHhh-cCChHHHHHHhcc----------------cchhhHHHHHHH
Q 014088 193 LLRHP-----SPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQ----------------NYKKSIKKEACW 250 (431)
Q Consensus 193 ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~----------------~~~~~v~~~a~~ 250 (431)
.|+.. +.++.-...+++--++......+..+++ .+++..+...+.. +.+.....+++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99775 6778888888888887766666666654 4677777666621 114456678889
Q ss_pred HHHHhhcCCHHHHH-HHHH--hCCHHHHHHHH---cc--CCHhHHHHHHHHHHHhcCCCCHHHH----------HHHHHC
Q 014088 251 TISNITAGNVNQIQ-AIIE--AGIIGPLVNLL---LN--AEFEIKKEAAWAISNATSGGSNEQI----------KFLVSQ 312 (431)
Q Consensus 251 ~L~nl~~~~~~~~~-~l~~--~~~i~~L~~ll---~~--~~~~v~~~a~~aL~~l~~~~~~~~~----------~~l~~~ 312 (431)
++-|+....+.... .... ..++..+..++ .. +.......++.+|.|+-........ ......
T Consensus 162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 99999875333222 1111 11334444442 11 1356778888888888321110000 000112
Q ss_pred CChHHHHhhcCC----C-C---HHHHHHHHHHHHHHHHhhhhhhhcCC----CCCcchHHHHHH-hhccHHHHHHhhcCC
Q 014088 313 GCIKPLCDLLNC----P-D---PRIVTVCLEGLENILKAGEAEKNMGN----TGGVNLFAQAID-DAEGLEKIENLQSHD 379 (431)
Q Consensus 313 ~~l~~L~~ll~~----~-~---~~v~~~al~~L~~l~~~~~~~~~~~~----~~~~~~~~~~l~-~~~~~~~l~~l~~~~ 379 (431)
..+..|+.+++. . + .+...-.+.+|.++.+.....++... +.. ......+. ....-.+|.+++.++
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~-~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPD-KDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCCh-hhcccCCCCCcchHHHHHHHhCCC
Confidence 235555555531 1 1 23445566677777766543222000 000 00000111 123456788899888
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccC-----CCCCCCCCC
Q 014088 380 NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFA-----GNGLPVPSG 426 (431)
Q Consensus 380 ~~~v~~~a~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 426 (431)
.+.++..+...+=.++ ++++.-=+.|-||||| .+|+++|..
T Consensus 321 ~~~~k~~vaellf~Lc------~~d~~~~v~~~GyG~AaG~L~~~gl~~~~~ 366 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLC------KEDASRFVKYVGYGNAAGFLASRGLGGPPE 366 (446)
T ss_pred CchHHHHHHHHHHHHH------hhhHHHHHHHcCchhHHHHHHHcCCCCCcc
Confidence 8999999988886664 4455666677788876 467766643
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0011 Score=63.76 Aligned_cols=281 Identities=17% Similarity=0.174 Sum_probs=169.0
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP 105 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 105 (431)
|.++..+.-|+.+++|+.+ .+.++.+.. =|+ ++|.+ ..+-++..++-+|..+.+..|+ .+-..+....
T Consensus 122 srn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~r 191 (938)
T KOG1077|consen 122 SRNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQR 191 (938)
T ss_pred cCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHH
Confidence 4556788888899998865 455554442 233 55655 3477888899999998877654 2323345778
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-------------CChHHHHHHHHHHHHhcc
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------------NDDEVLTDACWALSYLSD 172 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-------------~~~~v~~~a~~~L~~l~~ 172 (431)
++.+| .+.+-.+.-.+...+-.++...+..........+..|..+... +.|=++..+++.|.+.-.
T Consensus 192 iv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 192 IVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred HHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence 88888 5556666667777788888776444333333333333333221 234567777777776632
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCC--Cc-----ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088 173 GTNDKIQAVIEAGVCPRLVELLRHP--SP-----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 173 ~~~~~~~~~~~~~~i~~L~~ll~~~--~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 245 (431)
-.+.... ..-..+++.++...+.. .. ..+-..+.-.-+++.+-+.....+. ..+..|-+++.+. +..+|
T Consensus 271 ~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiR 346 (938)
T KOG1077|consen 271 PEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIR 346 (938)
T ss_pred CCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccch
Confidence 2211111 11113444444444421 11 1222223323333333332222222 4577888899888 89999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
.-|+..++.++.. ......+..+ ...++..|+ ..|..+|+.|+..|..|+... +.+. ++.-|.+++.+
T Consensus 347 YLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~t 415 (938)
T KOG1077|consen 347 YLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLET 415 (938)
T ss_pred hhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhh
Confidence 9999999999875 2223333333 667888888 569999999999999998754 3443 46667777877
Q ss_pred CCHHHHHHHH
Q 014088 325 PDPRIVTVCL 334 (431)
Q Consensus 325 ~~~~v~~~al 334 (431)
.++.+++...
T Consensus 416 Ad~sireeiv 425 (938)
T KOG1077|consen 416 ADYSIREEIV 425 (938)
T ss_pred cchHHHHHHH
Confidence 7777775533
No 113
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00076 Score=63.46 Aligned_cols=259 Identities=11% Similarity=0.112 Sum_probs=136.3
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.|-..+ ++.-+.+.-.+++.+..++..+ .........+..|-.+|.+.....|-.|+++|..++...|.... .+.
T Consensus 268 fL~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vcN- 342 (898)
T COG5240 268 FLNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VCN- 342 (898)
T ss_pred HHHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ecC-
Confidence 333444 4444667777888888877764 33345567888888899999999999999999999977664432 111
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 264 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 264 (431)
+.+-.++.+.+..+...|+..|.. .++++.+..+++ .+..++++- ++..+.-+.-++..|+..-|....
T Consensus 343 ---~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~-----~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 343 ---KEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN-----LIPSFVHDM-SDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ---hhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH-----HHHHHHHhh-ccCceEEeHHHHHHHHhhCcHHHH
Confidence 333445555555555555554433 334444443332 223333222 223333333333333322121111
Q ss_pred --------HHHHhCC-------HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHH-H----HHHCC--------ChH
Q 014088 265 --------AIIEAGI-------IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK-F----LVSQG--------CIK 316 (431)
Q Consensus 265 --------~l~~~~~-------i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~----l~~~~--------~l~ 316 (431)
.+.+.|. +..+.+++. .+++-++.|+..|+.+...+...+.. . +-+.| .+.
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHH
Confidence 1112222 222222222 14455666666666666554322111 0 00111 133
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 317 PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 317 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
.+.+-+--++.-++..|+.+|.++.-..+.. .........+.+.+++.+.++|++|.-.+..+-
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNISDV---------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3333333345567777777777665433221 111223455778899999999999998887654
No 114
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=0.00025 Score=70.79 Aligned_cols=305 Identities=16% Similarity=0.143 Sum_probs=200.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
.++....+++....+.+.....-...++.. +...+..+.....++.+-.+. .+.+..++...+..+..++--.+ ..
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~ 432 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KE 432 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cC
Confidence 455666666666666666655554444421 111223333444455554444 67777777777766665543322 22
Q ss_pred hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088 139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 218 (431)
.......|.+...+++..+.++.+..+.+..+-...+..-........++.+..+-....+.++...++.+..++....
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 3346788889999999999999999987766554433222334455667777777766678888889998888876433
Q ss_pred hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
..+++...-+.+...+.+. ...+|+.|+..+..++.... ........++.++.+..+++...|...+.++..++
T Consensus 512 --~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 3445555666677777776 78899999998888876211 11122345777887777777888888888888776
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC
Q 014088 299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 378 (431)
Q Consensus 299 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 378 (431)
...+.+ +....+++.+..+...+.+.++-.+++.|..+.+.-.... .+....+.++.|..+
T Consensus 586 ~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~---------------~~~~v~pll~~L~~d 646 (759)
T KOG0211|consen 586 EVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV---------------RDEEVLPLLETLSSD 646 (759)
T ss_pred HHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH---------------HHHHHHHHHHHhccC
Confidence 543322 2344578888999999999999999999999887654321 123345556777778
Q ss_pred CCHHHHHHHHHHHHH
Q 014088 379 DNTEIYEKAVKILET 393 (431)
Q Consensus 379 ~~~~v~~~a~~~l~~ 393 (431)
++.+++-+|..+...
T Consensus 647 ~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 647 QELDVRYRAILAFGS 661 (759)
T ss_pred cccchhHHHHHHHHH
Confidence 888888777665543
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.07 E-value=2.1e-05 Score=68.58 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCC--hHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhh
Q 014088 69 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 144 (431)
Q Consensus 69 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 144 (431)
.+.++..|..++.-|..+.... ......+.. ...+..+...+ .+....+...|+.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5578999999999999987544 111122211 13445566666 566778999999999999987544433445789
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh---hhhH
Q 014088 145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ 221 (431)
Q Consensus 145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~---~~~~ 221 (431)
+|.|++.+.+++..++..|..+|..++...+.... + .++.+.....+.++.+|..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999999999999999999987651111 1 14667777888999999999999999876544 1111
Q ss_pred H-HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088 222 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263 (431)
Q Consensus 222 ~-~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 263 (431)
. ..-..+++.+.+.+.+. ++++|..|-.++..+....++..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhh
Confidence 1 11125778889999999 99999999999988866434433
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.05 E-value=0.0018 Score=61.91 Aligned_cols=234 Identities=18% Similarity=0.127 Sum_probs=156.8
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhcCCChHHHHHHHHc-
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----TDDVREQAVWALGNVAGDSPKCRDLVLSN- 100 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~- 100 (431)
..+++.+...|++||+|+...++..|+.+.+.|..+.++..|+.. +.++.-...+.|.-++...+..+..+.+.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 456789999999999999999999999999999999999999875 78888888999888887777777665554
Q ss_pred CChHHHHHHhccc----------------cchhHHHHHHHHHHHhhcCCCCCChhh----HhhhHHHHHHhh---c--CC
Q 014088 101 GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKPQPLFEQ----TRPALPALERLI---H--SN 155 (431)
Q Consensus 101 ~~i~~l~~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~i~~L~~lL---~--~~ 155 (431)
+++..+...+... .+......++.++.|+..+.+...... ...+++.+..++ . .+
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 6677777766310 134556678888999988764443322 244445555552 1 12
Q ss_pred ChHHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHHhcCC-----C---CcccHHHHHHHHhHhhcCC
Q 014088 156 DDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLRH-----P---SPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~i~~L~~ll~~-----~---~~~v~~~a~~~l~~l~~~~ 216 (431)
......+++.+|.|+--..... .........+..++.+|.. . -.+.....+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 3467888888888773211111 0001112345566666532 1 1246677888888888876
Q ss_pred hhhhHHHh----------------hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088 217 DMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 217 ~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 261 (431)
...++.+. ...+-..|++++.+. .+.+|..+...+-.+|..+..
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhhHH
Confidence 54433332 224456788888888 688999888888888865444
No 117
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.04 E-value=1.5e-05 Score=51.90 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
+.+|..|+|+|++++...++....... .+++.|+.+|.+++..||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998877777776544 4899999999999999999999999875
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.03 E-value=1.6e-05 Score=57.67 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=68.5
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.|++.|.+++++.+|..++++|+.+-. + .+++.|+.+++++++.+|..++++|+.+- .
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~ 60 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG-----------D 60 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence 455578678899999999999995421 1 35999999999999999999999999983 1
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLS 127 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 127 (431)
...++.|.+.+.++.+..++..|.++|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2278889999977677778888888874
No 119
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00045 Score=66.74 Aligned_cols=239 Identities=17% Similarity=0.196 Sum_probs=141.4
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.|.+.|...+++.+|..++.-|+-...++... .+-+.+-..|...+...-+.|...++-+--.... .
T Consensus 417 yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~----- 483 (929)
T KOG2062|consen 417 YLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q----- 483 (929)
T ss_pred HHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H-----
Confidence 44456666666677777766665444322111 1234455555555555555555555544322211 0
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
.+++.+...-...+.+.+.+-..--++...-.. ....=+.+-+++.+.|+-+|.....++.---.....
T Consensus 484 -eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn--- 552 (929)
T KOG2062|consen 484 -EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN--- 552 (929)
T ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---
Confidence 023334444434445555554333333322221 124556677888888998888877766522111111
Q ss_pred HHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088 180 AVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 258 (431)
Q Consensus 180 ~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 258 (431)
.+++..|+.. .++.+.+||+.|..+|+-++...++ ..+..+++|..++++.||..++.+|+=.|.+
T Consensus 553 ----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 553 ----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred ----hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 1456667766 5778899999999999998876663 3577888888888999999999999988875
Q ss_pred CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
.-. .. .+..|-.+..++..-||+.|+-+++-+....+
T Consensus 620 tG~-~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 620 TGL-KE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred CCc-HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 221 11 22333344456666788888888887766544
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0062 Score=61.21 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=186.1
Q ss_pred CChHHHHHHHHHHHHHcCC--ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 29 CFGAVQFEAAWALTNIASG--TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
.++.-+..|++.+++++.. .+..-+..++.-+++.+...++++.-.+|..|+|+++.++...-. +...-..+++..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t 507 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELT 507 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHH
Confidence 3467778999999988741 112222334445677888888999999999999999999943211 111122356777
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhHhhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHH
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVI 182 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~ 182 (431)
.+.|..+.+-.++..|+-+|..+..+.+.... ....+.+..++++.+.-+.+....++..+. ..+..-......+.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 88886688889999999999999988744422 233556667777777666666666555543 23332222222232
Q ss_pred HhCcHHHHHHhcCC---CCccc---HHHHHHHHhHhh---cCChhh--hHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088 183 EAGVCPRLVELLRH---PSPSV---LIPALRTVGNIV---TGDDMQ--TQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251 (431)
Q Consensus 183 ~~~~i~~L~~ll~~---~~~~v---~~~a~~~l~~l~---~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 251 (431)
+ .+...+.+++.. .++.. ...|.++|..+. ..-+.. .-.-++..+++.+-.+|++. -.++-++++..
T Consensus 588 q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei 665 (1010)
T KOG1991|consen 588 Q-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEI 665 (1010)
T ss_pred H-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 445556666653 22222 233333333332 111111 11123445567777777777 77888888888
Q ss_pred HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCC--CHH
Q 014088 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCP--DPR 328 (431)
Q Consensus 252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~--~~~ 328 (431)
+.+++...++..-.+++ +++.+.+.+......--....-+|.|+...+.+...+.-. ..-+...+..++.+. ...
T Consensus 666 ~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~ 743 (1010)
T KOG1991|consen 666 VSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDS 743 (1010)
T ss_pred HhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchH
Confidence 88887765555555555 6788888888877777888899999988776543222110 011222333344432 222
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014088 329 IVTVCLEGLENILKAGEA 346 (431)
Q Consensus 329 v~~~al~~L~~l~~~~~~ 346 (431)
=...|++.+.-++-.+..
T Consensus 744 d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 744 DCESACKLLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 234466666666655543
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0054 Score=59.35 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=155.1
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
+..+.+-| .+.|+...--|+.+++|+-... ....+-+-+-++|.+++ .-+++.++.|+..+.+..++...
T Consensus 113 in~iknDL-~srn~~fv~LAL~~I~niG~re------~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~- 184 (938)
T KOG1077|consen 113 INSIKNDL-SSRNPTFVCLALHCIANIGSRE------MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN- 184 (938)
T ss_pred HHHHHhhh-hcCCcHHHHHHHHHHHhhccHh------HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence 34455555 5667888888999999986542 22233344457777653 56788888899888887765432
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc------------chhhHHHHH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------------YKKSIKKEA 248 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------------~~~~v~~~a 248 (431)
..+..+.++.+|.+.+-.+...+...+..++..+++.....+. ..+..|..+.... +.+-++...
T Consensus 185 --~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 185 --PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred --hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 2267899999999988889888999998888877654432221 1222222222110 146677777
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccC--CHh-----HHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHH
Q 014088 249 CWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA--EFE-----IKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPL 318 (431)
Q Consensus 249 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~--~~~-----v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L 318 (431)
++.|.++-. .++..+..+.+ +++.++.-.+.. ... .+...+.-..+++.+- +++.... .+..|
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~~~~L 334 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----AVNQL 334 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----HHHHH
Confidence 888777744 23344443333 333333333311 111 1122222222333222 2222222 57778
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 014088 319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~ 397 (431)
.+++.+.++.++-.+++.++.++..... ...++.. .+.|...++ ..+-.++++|.++|..+++.
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~s-------------~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEFS-------------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccch-------------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 8888888888888888888887765332 2222222 344444444 67788888888888888775
Q ss_pred C
Q 014088 398 E 398 (431)
Q Consensus 398 e 398 (431)
+
T Consensus 400 ~ 400 (938)
T KOG1077|consen 400 S 400 (938)
T ss_pred h
Confidence 5
No 122
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.004 Score=61.94 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=128.1
Q ss_pred CCChHHHHHHHHH-HHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 28 CCFGAVQFEAAWA-LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 28 s~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
+.++.-|..|++- |..++.+.+ .. -..+.+++...+.+.++++-+-.=|.+.+...|+ ..+. +++.+
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti 97 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTI 97 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHH
Confidence 3445667777664 445555432 21 2456777777788999999888888888887774 2333 46778
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 186 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 186 (431)
.+-+ +++|+.+|..|++.++.+=. ......+++.+.+++.++++.||+.|+.++.++-+-+++. ..+.|.
T Consensus 98 ~kDl-~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~ 167 (757)
T COG5096 98 QKDL-QDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGL 167 (757)
T ss_pred Hhhc-cCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccH
Confidence 8888 88999999999999988633 3455788999999999999999999999999998776543 556688
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 187 CPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
+..+..++.+.+|.+..+|+.++..+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88899999999999999999999888654
No 123
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.011 Score=60.12 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=154.1
Q ss_pred hhhhhHHH---HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcC
Q 014088 13 ISLFVDQF---FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG 88 (431)
Q Consensus 13 ~~~~v~~~---lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 88 (431)
+|..|+-. |.+.|. +.+..++-.|+..++.++...+.. +. ..+|...+.++.- .++..-..++-+|+.++.
T Consensus 335 v~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 55555533 333343 344589999999999998866522 22 2356666665554 346666688899999985
Q ss_pred CChHHHHHHHHcCChHHHHHHhc-------cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHH-HHhhcCCChHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL-ERLIHSNDDEV 159 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L-~~lL~~~~~~v 159 (431)
..--.-..+. ..++.+++.|. .+....+|..||.++|.+++.. +.........+.+.| ...+-+.+...
T Consensus 410 rGlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 RGLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cCCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 4321111111 24555555552 2335679999999999999885 322222333344433 33444667777
Q ss_pred HHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 160 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 160 ~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
|..|..++.... +... . . .+++ ++...+.-....+.++...+..-....+.+...+++ +.+.+-+.+
T Consensus 488 RRAAsAAlqE~VGR~~n-~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~H 555 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN-F-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCH 555 (1133)
T ss_pred hHHHHHHHHHHhccCCC-C-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhccccc
Confidence 888888876443 3211 0 0 1111 122222223334555666665555555555554443 122222555
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
= +..+|+.++|+|.+|+...++. .....++++++.....+...+.-+..+.+.++.
T Consensus 556 W-d~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 556 W-DVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred c-cHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 5 7999999999999998754543 334578889988888888877766666666554
No 124
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.96 E-value=0.0035 Score=59.73 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=123.6
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhc-----cCCh
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLS-----DGTN 175 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~-----~~~~ 175 (431)
.+..++.......++..+..++.+++.+.-..+... ....++..+..-+ ...+.+.+..++..+..++ ++++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 566677777667778888899999998886632222 3345555555544 3334444444444443333 3333
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh--------hhHHHhhc----CChHHHHHHhcccchhh
Q 014088 176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM--------QTQCIINH----QALPCLLDLLTQNYKKS 243 (431)
Q Consensus 176 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~ 243 (431)
.. . ..+..++.++.+ +++...+.+.++-+....+. ..+.+.+. .++|.+++..+.. +..
T Consensus 268 ~~-~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~ 338 (415)
T PF12460_consen 268 LA-T-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDE 338 (415)
T ss_pred hH-H-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chh
Confidence 22 2 345677888877 56788888888888876221 22222222 3466777777766 566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
.|.....+|+++..+-|...-.---..++|.+++.|..++.+++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8888899999999865643322112458999999999999999999999999998866
No 125
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.013 Score=58.93 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=50.6
Q ss_pred hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChH
Q 014088 15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 92 (431)
Q Consensus 15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 92 (431)
.++.+.+...+. |+.--+|.+|+|+++.++... ..+...-..+++...+.|. +.+-.++-.|+-+|..+.++.+.
T Consensus 461 ~flv~hVfP~f~-s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQ-SPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHhhHhhc-CchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 344444444444 555689999999999998522 2222222346677777776 67788888999999988776553
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.94 E-value=4.8e-05 Score=55.06 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=69.8
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
++.|++.+.+++++.++..++++|+.+- ....+|.+..+++++++.++..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 5678888878889999999999999442 2368999999999999999999999999873
Q ss_pred HhCcHHHHHHhcCCCC-cccHHHHHHHHh
Q 014088 183 EAGVCPRLVELLRHPS-PSVLIPALRTVG 210 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~-~~v~~~a~~~l~ 210 (431)
....++.|...+.+++ ..++..++.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1246788999887755 455788888774
No 127
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00025 Score=65.17 Aligned_cols=270 Identities=16% Similarity=0.153 Sum_probs=144.4
Q ss_pred cccchhHHHHHHHHHHHhhcCC-----CCCChh-hHhh-hHHHHH-----Hh-hcCCChHHHHHHHHHHHHhccCChHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGK-----PQPLFE-QTRP-ALPALE-----RL-IHSNDDEVLTDACWALSYLSDGTNDKI 178 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~-~~~~-~i~~L~-----~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~ 178 (431)
.+..+.++..+..++..+-..- |..... ...+ +.-.+. .. -.+.-+..+...|.++.++........
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l 384 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL 384 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC
Confidence 5667888888888887775431 221111 1111 111111 11 112234567777888877764321110
Q ss_pred HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA- 257 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~- 257 (431)
.--.+.-.+..+...-++.+.-++..|.++++.++-+.........-.+....+...+.+. ....|..++|+++|++.
T Consensus 385 pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdA 463 (728)
T KOG4535|consen 385 PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDA 463 (728)
T ss_pred CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHH
Confidence 0000000001111111223344677788888888877665555455556677777777777 78899999999999985
Q ss_pred ---C--CHHHHHHHHHhCCHHHHHHHHcc---CCHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhc-CCCC
Q 014088 258 ---G--NVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLL-NCPD 326 (431)
Q Consensus 258 ---~--~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll-~~~~ 326 (431)
+ +++..+.=+..-.+..+++.... ...+|+.++.++|+|+...-.+ +........+-+..+.... -...
T Consensus 464 L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~ 543 (728)
T KOG4535|consen 464 LIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAA 543 (728)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccc
Confidence 2 22222221222234455554433 2678999999999999753210 0000111112222332222 2335
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHh
Q 014088 327 PRIVTVCLEGLENILKAGEA-EKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 327 ~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~ 394 (431)
-+++-+++.++.|++++..- ... ++.. ...++.|-.| ..+.|-.||-+|..+|..-
T Consensus 544 ~kV~WNaCya~gNLfkn~a~~lq~-------~~wA-----~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 544 MKVRWNACYAMGNLFKNPALPLQT-------APWA-----SQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred cccchHHHHHHHHhhcCccccccC-------CCch-----HHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 68999999999999986543 110 1111 1234455555 5778889988888877643
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0019 Score=64.24 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=129.5
Q ss_pred ccchhHHHHHH-HHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 113 HAKLSMLRNAT-WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 113 ~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
+.+..-+..|+ .+++.++.+.. +..++|-+++...+.|.++++-+-.-+.+.++..|+..- -.+..+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHH
Confidence 33444444444 57788887743 567888888888888999999999999999988875433 2356777
Q ss_pred HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 014088 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271 (431)
Q Consensus 192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 271 (431)
+=+.++++.+|..|+++++.+=. ..+.. .+++.+.+++.++ ++.||+.|+.++.++-.-+++ .+.+.|.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~------~el~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~ 167 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRV------KELLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGL 167 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcCh------HHHHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccH
Confidence 78899999999999999987733 22222 5788999999999 999999999999999875555 3446678
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 272 IGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
+..+..++.+.++.+..+|+.++..+-.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 8888899999999999999999999854
No 129
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.84 E-value=0.00015 Score=52.99 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
|+.++.+|+.++.+-+.......+. ++++++..+.+++++||..|+.+|.|++.....+....+.+ +.+.|..+...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 6778888888876544445555553 89999999999999999999999999987665455554444 78888889988
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 014088 325 PDPRIVTVCLEGLENILK 342 (431)
Q Consensus 325 ~~~~v~~~al~~L~~l~~ 342 (431)
.++.++. +.+.|-++++
T Consensus 80 ~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRS-AAELLDRLLK 96 (97)
T ss_pred CchhHHH-HHHHHHHHhc
Confidence 8988876 4577777764
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0099 Score=54.48 Aligned_cols=225 Identities=16% Similarity=0.095 Sum_probs=161.5
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhcCCCCcc------cH
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVCPRLVELLRHPSPS------VL 202 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~------v~ 202 (431)
....-..++.++.+|.+.|.++....+..+..+...+ ...+..+++.++++.|++-+..-+.+ -.
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 3445688999999999999999999999998887421 23456678889999998887653333 34
Q ss_pred HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-
Q 014088 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL- 280 (431)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~- 280 (431)
..++..+-|++...+.....+.+.|.+..|+.-+... .-..-+..|..+++-+...+.+.+..+-...++..+++-+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 5578888899888887888888889999988855433 24566777888888777766666666666667777776552
Q ss_pred ----cC----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088 281 ----NA----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 352 (431)
Q Consensus 281 ----~~----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 352 (431)
++ ..+..++....|+.+.... ..+..++...+++...-+++. ....+..++++|-..+..++..
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt----- 351 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAP--ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT----- 351 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcCh--hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch-----
Confidence 21 2456788888898888754 677888887777766656654 4455667788887777655432
Q ss_pred CCCcchHHHHHHhhccHHHHHHh
Q 014088 353 TGGVNLFAQAIDDAEGLEKIENL 375 (431)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~l~~l 375 (431)
+++..+.+..|+..+-.+
T Consensus 352 -----~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 352 -----PNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -----HHHHHHHHHHhHHHHHHH
Confidence 257777777788887766
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.78 E-value=2.6e-05 Score=50.69 Aligned_cols=55 Identities=36% Similarity=0.579 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 116 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 116 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
+.+|..|+++|++++...+.........++|.|..+|++++++||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887765455556688999999999999999999999999875
No 132
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.034 Score=51.13 Aligned_cols=262 Identities=11% Similarity=0.084 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCC----h----hhHhhhHHHH
Q 014088 79 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPL----F----EQTRPALPAL 148 (431)
Q Consensus 79 a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~----~----~~~~~~i~~L 148 (431)
.+.-+..++.. |.....+++.++++.++.+| .+.+.++....+..+..|.... +... . ....++++.|
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 34444455543 45667888999999999999 7888999999999999998754 1111 1 1225677777
Q ss_pred HHhhcCCC------hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCChhhh
Q 014088 149 ERLIHSND------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQT 220 (431)
Q Consensus 149 ~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~ 220 (431)
++-++.-| ..-....+..+-|+..-.+......++.|.+..|+.-+.. +-......|..++.-+...+....
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 77765322 2335667778888888888877878888888888875543 334556778888888877766666
Q ss_pred HHHhhcCChHHHHHHhc-----ccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHH
Q 014088 221 QCIINHQALPCLLDLLT-----QNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 292 (431)
Q Consensus 221 ~~~~~~~~l~~L~~lL~-----~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 292 (431)
...-..+++..+++-+. ++. ..+.-.+..-+|+.+... +..+...+....++...-++.. ....+..++.
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 66667788888888762 211 234445555666666665 6667777776666644444444 5566778889
Q ss_pred HHHHhcCCC-CHHHHHHHHHCCChHHHHhhcC-CC---------CHHHHHHHHHHHHHHHHhh
Q 014088 293 AISNATSGG-SNEQIKFLVSQGCIKPLCDLLN-CP---------DPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 293 aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~-~~---------~~~v~~~al~~L~~l~~~~ 344 (431)
+|-....+. ..+.+..+++..++..++.++- .+ ..+.-++.+..|+.++...
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 998887654 3467778888878887776543 22 2356678888888888766
No 133
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.74 E-value=0.0084 Score=59.71 Aligned_cols=281 Identities=10% Similarity=0.079 Sum_probs=170.5
Q ss_pred HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
+..+..+..+-++..|+++++..++ ......+ ..+++..|+++....+.++.-..+.+|+..+.-+++. ....+..
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~sk 571 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESK 571 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcc
Confidence 4445556667888888888888774 2221111 1367778888888788899889999999999888764 3445556
Q ss_pred ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChH
Q 014088 102 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 102 ~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~ 176 (431)
+.+..+.+.. .+.||.+...+-.++..++... ...-.+....+|.+++.++.++ +....-++..|..+.++.+.
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 6666666653 5667877777778888887642 1112234578999999998765 56666777777777766543
Q ss_pred HHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH--HHHHHhcccchhhHHHHHHHHHH
Q 014088 177 KIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP--CLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
-.....-.-+++.+.++. .+++..+...+-.||..+......+...--..++.. .+++.+..--+++.-..++..+|
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG 730 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVG 730 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHh
Confidence 332233335678888875 446778888899999998876554443333333333 33333321112233333333444
Q ss_pred Hh----hcCCHHHHHHHHHhCCHHHHH-HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088 254 NI----TAGNVNQIQAIIEAGIIGPLV-NLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 308 (431)
Q Consensus 254 nl----~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 308 (431)
.+ ..+-+......++. ++..++ ++-+.+...+...-+.+++++...........
T Consensus 731 ~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~F 789 (1005)
T KOG2274|consen 731 PLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNF 789 (1005)
T ss_pred HHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 33 32212222222221 233333 33344577888888889998887654333333
No 134
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.73 E-value=0.038 Score=55.30 Aligned_cols=227 Identities=14% Similarity=0.149 Sum_probs=153.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHH
Q 014088 70 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149 (431)
Q Consensus 70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 149 (431)
+..|.+...+.|+++..+........... .++...+..+..+..+.++..|+++++..++. ........+++..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHHHHH
Confidence 45677777899999987754222111111 13455666665667788888888888888733 222333456777888
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 227 (431)
Q Consensus 150 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (431)
++....+.++......+|+.+++-+++... ..++.+.|.++.++ .+++|.+...+-.++..++.....+ . -+...
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g-~m~e~ 613 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-G-PMQER 613 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-c-chHHH
Confidence 888888899999999999999988876644 55667778877775 3467777777777776666422111 1 12336
Q ss_pred ChHHHHHHhcccch----hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCC
Q 014088 228 ALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 228 ~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
.+|.+++.|..+ . ......++-.|..+.++.+.-....+-.-++|.+.++. ++++..+-.++-.+|..+.....
T Consensus 614 ~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 789999999876 4 56677777788877774332233333334678888876 55688888999999999888754
Q ss_pred HH
Q 014088 303 NE 304 (431)
Q Consensus 303 ~~ 304 (431)
+.
T Consensus 693 eq 694 (1005)
T KOG2274|consen 693 EQ 694 (1005)
T ss_pred HH
Confidence 33
No 135
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.70 E-value=0.00031 Score=51.28 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 33 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
++...+++|+|++..++..++.+.+.|++|.++.... ..+|-+++.|++++.+++..+++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999999654 478999999999999999999998877765
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.70 E-value=0.051 Score=51.86 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=169.5
Q ss_pred ChHHHHHHHHHHHHHcCCChHhH-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhcCCCh-HHHHH
Q 014088 30 FGAVQFEAAWALTNIASGTSENT-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSP-KCRDL 96 (431)
Q Consensus 30 ~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~-~~~~~ 96 (431)
+.+.....+.++.++.....+.. ....+..+++.+....-. . ++.+...+...+..+...-+ +.+..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777788888887765332222 334444578888776532 1 24555666666666654332 22222
Q ss_pred HHHcCChHHHHHHhc---------cccc--hhHHHHHHHHH-HHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHH
Q 014088 97 VLSNGALMPLLAQFN---------EHAK--LSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDA 163 (431)
Q Consensus 97 i~~~~~i~~l~~~l~---------~~~~--~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a 163 (431)
+ +..+..++. ...+ ..........+ +-++.-++.........++..++.+.. ..++..+..+
T Consensus 136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 210 (415)
T PF12460_consen 136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAA 210 (415)
T ss_pred H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHH
Confidence 2 223333331 0001 01112222222 222222222332244457777777755 4468888999
Q ss_pred HHHHHHhccCC--hHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHh----hcCChhhhHHHhhcCChHHHHHHh
Q 014088 164 CWALSYLSDGT--NDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNI----VTGDDMQTQCIINHQALPCLLDLL 236 (431)
Q Consensus 164 ~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l----~~~~~~~~~~~~~~~~l~~L~~lL 236 (431)
+.+++.++..- ++... .++..+...+ ....+..+..++.++..+ ......... ..+..|++++
T Consensus 211 ~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL 280 (415)
T PF12460_consen 211 LQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELL 280 (415)
T ss_pred HHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHh
Confidence 99998887542 22122 3344444444 333444444444444333 322222222 3466788888
Q ss_pred cccchhhHHHHHHHHHHHhhcCCHH--------HHHHHHHhC----CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH
Q 014088 237 TQNYKKSIKKEACWTISNITAGNVN--------QIQAIIEAG----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 304 (431)
Q Consensus 237 ~~~~~~~v~~~a~~~L~nl~~~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 304 (431)
.+ +++...++..++-+....++ ..+.+.++. ++|.+++-....+.+.|.+.+.+|+++..+-+..
T Consensus 281 ~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~ 357 (415)
T PF12460_consen 281 SS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS 357 (415)
T ss_pred CC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH
Confidence 75 46678888888877765232 334444444 4666766666667779999999999999876533
Q ss_pred HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 305 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 305 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
.... .-..+++.|++.++.++.+++..++.+|..++....
T Consensus 358 vl~~-~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 358 VLLP-ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 3222 123478899999999999999999999999988763
No 137
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.64 E-value=0.022 Score=52.02 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=146.0
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-----HHHHHHHh--CcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND-----KIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
.+++..|+..|..-+-+.++.+...+.++.....+ ..+.+... .++..|+..- +++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 57888899999988999999999999998765322 22323321 2333333332 456677888888888777
Q ss_pred CChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC---CHHHHHHHHccCCHhHHHHHH
Q 014088 215 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAA 291 (431)
Q Consensus 215 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~ 291 (431)
. +...+.++....+..+.+.+..+ +-++...|..++..+...........+..+ ++.....++.+++.-+|+.++
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 5 44566777888999999999988 999999999999997765576666666543 577788888999999999999
Q ss_pred HHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088 292 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 349 (431)
Q Consensus 292 ~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 349 (431)
..|+.+...... -..+++.+..-+..++.+|+++...++-.|..++.-++.++.+..+
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~ 290 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP 290 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH
Confidence 999999875421 2234444555688889999999999999999999988877766443
No 138
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.62 E-value=0.00018 Score=43.38 Aligned_cols=40 Identities=38% Similarity=0.738 Sum_probs=36.3
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 49 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 49 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
++.+..+.+.|+++.|+++++++++.++..++|+|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477889999999999999999999999999999999873
No 139
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0056 Score=62.71 Aligned_cols=231 Identities=14% Similarity=0.048 Sum_probs=143.8
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCC--hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 189 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 189 (431)
++.+..++..+..+|..++...+... ......+...+.+-+++.....+...+.+|..+....+...-.++. ..++.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHH
Confidence 45578899999999999998842222 2223455566667777778888888899998887665522122333 23344
Q ss_pred HHHhcCCCCcccHHHHHHHHhHhhcC-------ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088 190 LVELLRHPSPSVLIPALRTVGNIVTG-------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 190 L~~ll~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
++-.+...+...+..+..+|-.++.. ++. ....++ ..++.+...+-.. ...++...+.+++.+.......
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhcc
Confidence 44444777788888888888888731 111 011111 3344444444333 3333333344555554321121
Q ss_pred HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
...-.-.+++..+..+|.+++.+++..|+.++.-++..-+...... ....+++.+..+.+.....++..+-..|..+++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2112223456667778888999999999999999988765444333 223478888888888788899888888888888
Q ss_pred hhhhh
Q 014088 343 AGEAE 347 (431)
Q Consensus 343 ~~~~~ 347 (431)
.....
T Consensus 899 kfg~~ 903 (1176)
T KOG1248|consen 899 KFGAE 903 (1176)
T ss_pred HhCHH
Confidence 76554
No 140
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00045 Score=63.58 Aligned_cols=300 Identities=15% Similarity=0.125 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC-----CChHHHHHHHHcCChHH-
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-----DSPKCRDLVLSNGALMP- 105 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~~~i~~- 105 (431)
.+|..++.+|..++.+-.-.+..+++ +...+...+....+.++..+..++..+-. ..|+..+.-...+.+-.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 67888888888887754444444432 34555556677889999999988887742 12211111111111111
Q ss_pred -----HHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 106 -----LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 106 -----l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
.-....++..+..+..+|-.+.++....... .-......+-.+..+-.+.+.-++..|.+++.-+.-++.-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 1112223445566777888888876543111 1101111222222333344556777788888777666554433
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC----Chh---hhHHHhhcCChHHHHHHh---cccchhhHHHHHH
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDM---QTQCIINHQALPCLLDLL---TQNYKKSIKKEAC 249 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~---~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~ 249 (431)
...-......+...+.+..-..+..++++++|++.. .+. ....+.. -.+..+...- ... +.+|+..+.
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad-~dkV~~nav 505 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASAD-KDKVKSNAV 505 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhh-hhhhhhHHH
Confidence 333335556666667776778899999999999742 111 2222221 1122222211 223 689999999
Q ss_pred HHHHHhhcCCHHHHHHHHHh-------CCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088 250 WTISNITAGNVNQIQAIIEA-------GIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321 (431)
Q Consensus 250 ~~L~nl~~~~~~~~~~l~~~-------~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 321 (431)
++|+|+.. ..+.+.+. +-+..+.... -.+...||-+|+.+++|+..+..-.....=....+.+.|..+
T Consensus 506 raLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L 581 (728)
T KOG4535|consen 506 RALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL 581 (728)
T ss_pred HHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence 99999953 33333332 2222222222 223678999999999999886531000000011134555555
Q ss_pred cC-CCCHHHHHHHHHHHHH
Q 014088 322 LN-CPDPRIVTVCLEGLEN 339 (431)
Q Consensus 322 l~-~~~~~v~~~al~~L~~ 339 (431)
+. ..+-+++..|..+|..
T Consensus 582 v~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 582 VTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHhccceEeehhhhhhcC
Confidence 54 3455666666666543
No 141
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.59 E-value=0.003 Score=52.47 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh
Q 014088 72 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151 (431)
Q Consensus 72 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l 151 (431)
++.+|..++.+++-++...+...+ ..++.+...| .++++.+|+.|+.+|.+|....... ....++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHH
Confidence 478899999999999976654322 2477888888 8889999999999999998764211 113344778888
Q ss_pred hcCCChHHHHHHHHHHHHhccC
Q 014088 152 IHSNDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 152 L~~~~~~v~~~a~~~L~~l~~~ 173 (431)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 142
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.58 E-value=0.0018 Score=47.37 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhh
Q 014088 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (431)
|..++.+|..++..-......++- .++++++.++.++++.++..|+++|.++++..... +...+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~-- 67 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN-- 67 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence 455666777666544434333333 38999999999999999999999999999876542 233333
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 367 EGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 367 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
..++.|..+..++++.|+..| ..|.+++
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 347778889999999998777 5555544
No 143
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.57 E-value=0.006 Score=50.65 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 194 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 194 (431)
++.+|.+++-+++-|+...+ ....+.+|.+...|+++++.+|+.|+.+|.+|...+--+.+ ..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 47789999999999987643 33467899999999999999999999999999876543322 13347788888
Q ss_pred CCCCcccHHHHHHHHhHhhcC
Q 014088 195 RHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 195 ~~~~~~v~~~a~~~l~~l~~~ 215 (431)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 144
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.51 E-value=0.022 Score=51.98 Aligned_cols=204 Identities=12% Similarity=0.074 Sum_probs=141.4
Q ss_pred HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH----HHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ----CIINHQALPCLLDLLTQNYKKSIKKEACWTISN 254 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 254 (431)
+.+...+.+..|+..|..-+.+.+..+..+++++......... ..+....-+.+..++..-.++++...+...|..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3466678999999999998899999999999999876432211 112222223333333332245666777777777
Q ss_pred hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 014088 255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT 331 (431)
Q Consensus 255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~ 331 (431)
++.. +.....++....+..+.+.++.++.++...|..++..+...+. .....+... .+......++.+++.-++.
T Consensus 150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 7776 7778888888889999999999999999999999999887654 344444433 3567788899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 332 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.++..|+.++......+. ....+.+..-+..+..|+.+++..++-.|=.+..-
T Consensus 228 qslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 999999999977655432 24566667778888888888888877666554443
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.50 E-value=0.0048 Score=48.98 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=103.1
Q ss_pred HHHHHhCcHHHHHHhcCCCC------cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHHHHHHHH
Q 014088 179 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT 251 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~ 251 (431)
..++..+++..|+.++.++. .++...++.++..|..+. ......+...++..+........ +..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45777899999999997754 366777888998888764 34455666677888888887663 58889999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 014088 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL 309 (431)
Q Consensus 252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 309 (431)
|-++..+++...+.+.+.--++.|+..|+..+.+++.+|+..+-.+....++..++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998777666666665699999999999999999999999999888776655543
No 146
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=0.002 Score=63.29 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=149.8
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhc
Q 014088 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLS 171 (431)
Q Consensus 93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~ 171 (431)
-+...++.|+...|+.+. ....+..+..+..+|.. .- .-........++.+.+.+.+.. ..-...++.++.|++
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~--~i--~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG--KI--DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh--hc--CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 456677889999999998 44556667777777761 11 0111111334444554444322 223456888899998
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh-cCChHHHHHHhcccchhhHHHHHHH
Q 014088 172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
..+....+.+.+...++.+-.++..+++..+..++..+.||..++.-+...+++ ...++.....+... .......++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 776665566777777777777888888999999999999999887767777776 45566666666665 7788888887
Q ss_pred HHHHhhcCCHHHHH-HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088 251 TISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 251 ~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 323 (431)
++..++......+. ..--......+..++.+++.+++...+..+.|+. ....+....+.....++.+...-+
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHH
Confidence 77766654333333 2222346778888999999999999999999944 344455555555555555554443
No 147
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0081 Score=61.61 Aligned_cols=243 Identities=12% Similarity=0.095 Sum_probs=149.9
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-HHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV 97 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i 97 (431)
++....++.++.+|..+.+.|..++.. ++......+ ..+...|.+-+++.+...+...+.+|..|....+ +....+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334556666789999999999999885 322222221 1344555666666677777777888877765443 333333
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhc--CC---C-CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR--GK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~--~~---~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
.. .++-++-.+ ...+...++++..+|..++. .. . .+.......+++.+...+-..........+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 334444344 66678889999999888882 21 1 1123344556666655544333333333345555554
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088 172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251 (431)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 251 (431)
....+......-.++++.+..+|.+.+++++..|+..+..++...+...-......+++.+..++++. ...+|...-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222211122225667777788999999999999999999987664433333445788899988877 78888888888
Q ss_pred HHHhhc-CCHHHHHHHHH
Q 014088 252 ISNITA-GNVNQIQAIIE 268 (431)
Q Consensus 252 L~nl~~-~~~~~~~~l~~ 268 (431)
+-.+++ ...+....+..
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888776 23444444443
No 148
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.011 Score=57.71 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=122.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140 (431)
Q Consensus 61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 140 (431)
+..+..+|.+.++.++-.|+.+|.+++.++...+. +...++.++.+.++..++--.+.-|..+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 34444444444555555555555554433322111 233444444444444444444444444431 11122
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 141 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
..+++--++.+|.++|-+++..++.....++.... ..+-.+.+..+...--. =...+.+.|...++++..++...+..
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 35666667788889999999999998888876543 11111222111111100 01134467888888888888766644
Q ss_pred hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhc
Q 014088 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 298 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 298 (431)
.. .+++.+++.+.+. ++......+..+.......|..+..++ ..|++-+.. .+.++.+.|+|.++..+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHH
Confidence 43 5678899999888 776666666666666655565554443 345544433 36677788888888887
Q ss_pred CCC
Q 014088 299 SGG 301 (431)
Q Consensus 299 ~~~ 301 (431)
...
T Consensus 463 e~~ 465 (948)
T KOG1058|consen 463 EGL 465 (948)
T ss_pred hhh
Confidence 654
No 149
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0059 Score=59.79 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=83.3
Q ss_pred cHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088 186 VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 264 (431)
Q Consensus 186 ~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 264 (431)
.+..|.++|+. +..+.+.....++..++..++.... .++..|...+.+. +...-+.+.|.-+....|..
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~a-- 461 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPKA-- 461 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCCC--
Confidence 34455555544 3456667777777777765554443 3455566666544 33444455555554321110
Q ss_pred HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 265 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 265 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
......+..+...+.-.+..+|..|..++.++..... . ....+...|.+++...+.+++..|...|.++-
T Consensus 462 -~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 -PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 0112234555555555678899999999999984332 1 12335666778888889999999988888776
No 150
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.014 Score=49.86 Aligned_cols=243 Identities=18% Similarity=0.241 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 110 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l 110 (431)
..-+..|+..|.++... +.+..+.+...+.+...+...+.+|+..... ..++.++..+
T Consensus 19 l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-----------~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-----------DAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-----------hhhHHHHHHh
Confidence 45666777777777652 2255555555555566666777777776532 3577788877
Q ss_pred cc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-H---HHHH----
Q 014088 111 NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-K---IQAV---- 181 (431)
Q Consensus 111 ~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~---~~~~---- 181 (431)
.. +..+-+|..|..+|.++... ...+.+-+..+++-.+++..+..++..+-..... . ...+
T Consensus 77 ~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~Svd 146 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVD 146 (289)
T ss_pred cccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCC
Confidence 43 44567777899999988732 5667777777777777877777777655321100 0 0000
Q ss_pred ----HHhCcHHHHHHhc-CCCCccc-HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088 182 ----IEAGVCPRLVELL-RHPSPSV-LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 182 ----~~~~~i~~L~~ll-~~~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
...+-+..+-..+ +...+.. +..+...|.|+-. + ..+..+.+-+..+ +.-.|.++++++|.+
T Consensus 147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SALFRHEVAFVFGQL 214 (289)
T ss_pred CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hHHHHHHHHHHHhhc
Confidence 0001122332222 2222222 2334555544422 1 2355677777777 888999999999988
Q ss_pred hcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088 256 TAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 333 (431)
Q Consensus 256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 333 (431)
-.. -.+|.|.+.|... ++.||.+|+.+|+.++.. + .++.|.++++.+.+-+++.|
T Consensus 215 ~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 215 QSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred cch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCcHHHHHHHH
Confidence 542 2577788877654 889999999999999752 2 46777788888887777776
Q ss_pred HHHHHHH
Q 014088 334 LEGLENI 340 (431)
Q Consensus 334 l~~L~~l 340 (431)
.-+|.-+
T Consensus 272 ~valdm~ 278 (289)
T KOG0567|consen 272 EVALDML 278 (289)
T ss_pred HHHHHHH
Confidence 6666543
No 151
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.00055 Score=41.14 Aligned_cols=39 Identities=46% Similarity=0.640 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
++....+.+.|+++.|++++.+++.+++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999889999999999999986
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.01 Score=56.11 Aligned_cols=136 Identities=16% Similarity=0.218 Sum_probs=95.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088 146 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224 (431)
Q Consensus 146 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 224 (431)
..+.+++.+.++-.|.....+++.--.+.. ..+++..++.. .++.+.+|++.|+.+|+-+|....
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence 356677888888888877766653221211 12566777777 677888999999999998876544
Q ss_pred hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH
Q 014088 225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 304 (431)
Q Consensus 225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 304 (431)
..++..+++|..+.+..||...+.+|+-.|.+.-+.. .+..|-.++.+...-||+.|+-+++-+...++++
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 4567788888877789999999999998887533321 2334445556677788888988888887665533
No 153
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.39 E-value=0.0015 Score=47.76 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=57.8
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIE 268 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 268 (431)
++...+++|+|++..+......+.+.++++.+++...-+ .+|-+|++|.+++.|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 467789999999999998888889999999999877432 37999999999999999998887765554
No 154
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.38 E-value=0.025 Score=48.73 Aligned_cols=188 Identities=13% Similarity=0.155 Sum_probs=119.2
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------cCCCC--c---ccHHHHHHHHhHhhcCChhhhHH
Q 014088 156 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~l-------l~~~~--~---~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
+++.|+.|+.-|+.--+..++....+-. .|.+..|++= +..+. + .-..+++..+..++.+ ++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 6777888877777655544443333322 2554444322 23222 1 2233455666666665 456677
Q ss_pred HhhcCChHHHHHHhccc----chhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 223 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
++++.+.-.|...|+.. +-+.+|..++.+++.+.. .+++.+..+.+..++|..++.++.++.--|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888877777777543 247889999999999998 5678899999999999999999999988999999999998
Q ss_pred cCCCCHHHHHHHHH--------CCChHHHHh-hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 298 TSGGSNEQIKFLVS--------QGCIKPLCD-LLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 298 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.... ....++.+ ..++..++. +.+.+++.+.+.++++-.++..+...
T Consensus 167 L~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 167 LLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred Hcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 8753 33333221 113444443 33456777778888887777765543
No 155
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.048 Score=46.81 Aligned_cols=224 Identities=16% Similarity=0.180 Sum_probs=142.2
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
+..+.+.. .+.+...+...+.+|..+... ..+|.++..+.+. .+-+|..|..+|+.+. .+
T Consensus 38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~-~~------ 99 (289)
T KOG0567|consen 38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP------ 99 (289)
T ss_pred HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch------
Confidence 34444444 222444555666666665544 6888898888754 5778899999999887 22
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh----HHH--------hhcCChHHHHHHhcccc-hhhHHHH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT----QCI--------INHQALPCLLDLLTQNY-KKSIKKE 247 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~----~~~--------~~~~~l~~L~~lL~~~~-~~~v~~~ 247 (431)
...+.+-++.+++-..++..+..++..+-....... ... ...+-+..+-..|.+.. ..--|..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 234555566666777788877777766642211000 000 11122444444443331 2334556
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC--CC
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CP 325 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~--~~ 325 (431)
|.+.|.|+.. .+ .+..+.+-+..++.-.|.++..+++.+-... .++.|...|. ..
T Consensus 176 amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 176 AMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE 232 (289)
T ss_pred hhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence 7777777643 22 3556667777788899999999999986543 3556656554 35
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088 326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 394 (431)
++.++..|+.+|..+... ..++.|+.+.+++.+-|++-+.-+++.+
T Consensus 233 ~pMVRhEaAeALGaIa~e-----------------------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIADE-----------------------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred chHHHHHHHHHHHhhcCH-----------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 789999999999977532 2366688889999999999888888754
No 156
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.37 E-value=0.0098 Score=47.27 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHH
Q 014088 94 RDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWA 166 (431)
Q Consensus 94 ~~~i~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~ 166 (431)
...+...+++..|++++..... .++...++.++..|-.+....-......++..++...+.+ +..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567788899999999965553 5788889999999998853333344477888888888854 68999999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
|-++..+.+.....+.+.=-++.|+.+|+..++.++.+++..+..|....+..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999988876675666556889999999999999999999888887655433
No 157
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.015 Score=57.81 Aligned_cols=216 Identities=10% Similarity=0.089 Sum_probs=141.4
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
+++-+.++.+++..+..+.+...........+++......+++.|+-+--+|...+..++.-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 45567899999999999999765555566688999999999999999999999988888765432 4556666
Q ss_pred Hh-cCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH-HH
Q 014088 192 EL-LRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AI 266 (431)
Q Consensus 192 ~l-l~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-~l 266 (431)
.. .+. ...+.+...-.++.+++..-.+....... .++...+....++ +...|..++..++++|....-... .+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 322 22355555667777776543333322222 5667788888877 889999999999999973221111 22
Q ss_pred HHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCC-CHHHHHHHHHHHHH
Q 014088 267 IEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNCP-DPRIVTVCLEGLEN 339 (431)
Q Consensus 267 ~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~ 339 (431)
.+ ++..++.+... ++.-+|+.|+..+..+...-+.+....+ ...+....+..+.... +..++..+..++..
T Consensus 887 ~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 887 HE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 22 44555555544 4789999999999999886664544433 1223455555555433 33344444444433
No 158
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0074 Score=61.83 Aligned_cols=162 Identities=18% Similarity=0.153 Sum_probs=123.0
Q ss_pred HHHHHhhcCC-CCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CC
Q 014088 124 WTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HP 197 (431)
Q Consensus 124 ~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~ 197 (431)
..+..+|... -.......+.+.|.+++..+ .++|+++..|.-+|+.+..-...... .-++.|+..+. ++
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp 973 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCC
Confidence 3444444433 11223344667788888875 45899999999999988765544333 45688899886 78
Q ss_pred CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHH
Q 014088 198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 277 (431)
Q Consensus 198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 277 (431)
++.+|.++.-+++.++...+.... ..-+.|...|.+. +..+|+.|..++++|...+ .+.-.|.+..+..
T Consensus 974 ~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~ 1042 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMAL 1042 (1251)
T ss_pred Cceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHH
Confidence 999999999999999887664444 4567788889888 9999999999999998752 2233688999999
Q ss_pred HHccCCHhHHHHHHHHHHHhcCCC
Q 014088 278 LLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 278 ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
++.+++.+++..|-..+..+...+
T Consensus 1043 cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1043 CLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HhcCCcHHHHHHHHHHHHHhhhcc
Confidence 999999999999998888887655
No 159
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.074 Score=52.51 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 306 (431)
..+..|.++|......+.+.....++..+...+++.+. ..+..|+..+.+. +...-+.+.|.-+...+.
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP---- 459 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGP---- 459 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCC----
Confidence 44566667776554567777777777777775555433 2355577766543 233344444544433221
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 386 (431)
Q Consensus 307 ~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 386 (431)
+.......+..+.+...-.+..++..|..+|.++...++... ......+.+.+++.+.+++++
T Consensus 460 ~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----------------~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 460 KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----------------PSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----------------ccHHHHHHHHhcCchHHHHHH
Confidence 000112345566666666788899999999999873332221 222445677799999999999
Q ss_pred HHHHHHHhc
Q 014088 387 AVKILETYW 395 (431)
Q Consensus 387 a~~~l~~~~ 395 (431)
|.-.+...-
T Consensus 523 Atf~l~~l~ 531 (865)
T KOG1078|consen 523 ATFYLKNLE 531 (865)
T ss_pred HHHHHHHhh
Confidence 988887665
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.33 E-value=0.065 Score=51.94 Aligned_cols=288 Identities=12% Similarity=0.099 Sum_probs=147.0
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHH
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 108 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ 108 (431)
.++..+.-|+..|.....+-++..+. ++..++.+.++.+..||..|+..|..+|.++++.... ....|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 45788888999999888877877665 5788999999999999999999999999988765444 3557888
Q ss_pred HhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---CCChHHHHHHHHHHHH-hccCChHHHH--HHH
Q 014088 109 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGTNDKIQ--AVI 182 (431)
Q Consensus 109 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~-l~~~~~~~~~--~~~ 182 (431)
+| .+.++.-...+-.+|..+...++ .+.+..+...+. +++..+|+.++..|.. +..-..+... .-.
T Consensus 104 lL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 104 LL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp HT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred HH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence 88 56566556666666666654421 345555555554 5678899999887753 2211111111 112
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc----CChhhhHHHhhcCChHHHHHHh------cccchhhHHHHHHHHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTI 252 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v~~~a~~~L 252 (431)
+.-++..+-.+|.+-...=-...+.+|..+-. .+....+.+ ++.+.+.. ... +++.......++
T Consensus 176 e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e~Idrli~C~ 249 (556)
T PF05918_consen 176 EEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPESIDRLISCL 249 (556)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHHHHHHHHHHH
Confidence 22334555566655333333334455555543 122223322 22333222 112 333333333333
Q ss_pred HH----hhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-
Q 014088 253 SN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP- 325 (431)
Q Consensus 253 ~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~- 325 (431)
.. ++. .+.....++.+. ++|.+-++ ....+...+.+++.++...+......++ .-+.+.|..++-.+
T Consensus 250 ~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~L~~ymP~~~ 323 (556)
T PF05918_consen 250 RQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQLLKKYMPSKK 323 (556)
T ss_dssp HHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHHHHTTS----
T ss_pred HHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHHHHHhCCCCC
Confidence 32 222 344555555553 66655544 4467778888998888776432222222 11233333333221
Q ss_pred -CH----HHHHHHHHHHHHHHHhhhh
Q 014088 326 -DP----RIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 326 -~~----~v~~~al~~L~~l~~~~~~ 346 (431)
.+ ...+..+.+++.+......
T Consensus 324 ~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 324 TEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp ------HHHHHHHHHHHHHHHTT-TH
T ss_pred CCCcccchHhhHHHHHHHHHhhhCcc
Confidence 22 3456677788887765443
No 161
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.26 E-value=0.065 Score=48.69 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=126.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC--Chhhh
Q 014088 145 LPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT 220 (431)
Q Consensus 145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~ 220 (431)
+...+..+.+...+.|..++..+.++..... +... -....++..+.+.++.++.+-+..|+++++-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4444555566778999999999998875432 2211 11224677788888877766666777888777654 22334
Q ss_pred HHHhhcCChHHHHHHhcccc-hhhHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHH--Hcc----------CCH
Q 014088 221 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNL--LLN----------AEF 284 (431)
Q Consensus 221 ~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~ 284 (431)
..+++ .+.|.|.+.+.+.. ...+|..++.+|+-++. ..++.....++ .+..+... .+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44554 57788888887662 34566677777776654 33333332222 23322221 221 135
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.+...|+.+++-++..-+........ ...++.|..+|++.+.+++..|-++|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68889999998888665543344322 34689999999999999999999999988876664
No 162
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.078 Score=49.61 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=140.2
Q ss_pred CCChHHHHHhh----CCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 58 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 58 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
.|.+..++..+ .+++..++..|++.|+|.+...| ..+.. ....+..++.-|.+..+.+++-.+..+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 45555555544 34778999999999999998743 33333 2335677777776777888888888888877765
Q ss_pred CCCCC-hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH---HhcCCCCcccHHHHHHH
Q 014088 133 KPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV---ELLRHPSPSVLIPALRT 208 (431)
Q Consensus 133 ~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---~ll~~~~~~v~~~a~~~ 208 (431)
..... ....-++.-.+..++.+.+++.+..+...++.++.-.....+......+...+. -.+.++++.+. .||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence 32111 122234444666778889999999999999888743322212111112222333 33444555443 45555
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH--HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~--L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 286 (431)
....+.-+- ..+... +.++ +.+ +. +.. +..+.+. -..+....++....+... ..-++++.-+.+
T Consensus 410 ~~~~c~p~l-~rke~~--~~~q---~~l-d~-~~~-~~q~Fyn~~c~~L~~i~~d~l~~~~t~-----~~~~f~sswe~v 475 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKELY--HLFQ---ESL-DT-DMA-RFQAFYNQWCIQLNHIHPDILMLLLTE-----DQHIFSSSWEQV 475 (533)
T ss_pred HHHhcCchh-HHHHHH--HHHh---hhh-HH-hHH-HHHHHHHHHHHHHhhhCHHHHHHHHHh-----chhheecchHHH
Confidence 544443221 111111 1111 111 11 111 2221111 111222223332222221 111222222345
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
+..+...-.++..+-.+..+......-+...+..+...+-++++..+..++..+..
T Consensus 476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55555444555444444444443333345566677778888999999999887764
No 163
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.083 Score=54.06 Aligned_cols=253 Identities=15% Similarity=0.160 Sum_probs=152.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
+++..|+..+++.+..++-.|+..++.++...|. ... ...+..++.++....+...-..+|-+|+.++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5777888888889999999999999999976652 121 2256667776655556777778999999999874 1222
Q ss_pred hhHhhhHHHHHHhhcC--------CChHHHHHHHHHHHHhccCChHH-HHHHHHhCcHHH-HHHhcCCCCcccHHHHHHH
Q 014088 139 EQTRPALPALERLIHS--------NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPR-LVELLRHPSPSVLIPALRT 208 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~ 208 (431)
.....++|.+.+-+.. .-..||..||.++..+++..... ...+.+ .+.+. +...+-+.+..+|+.|..+
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHH
Confidence 2345677877777653 23568888888888877654322 222222 12222 3344556777888888877
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHH-HccCCHhHH
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIK 287 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~ 287 (431)
+.-..-...+.. .+++ |+...+.- .-..|.++...++.-....+..+..+++. ++.. +.+=+..+|
T Consensus 495 lqE~VGR~~n~p------~Gi~-Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 495 LQENVGRQGNFP------HGIS-LISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHhccCCCCC------Cchh-hhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHH
Confidence 765543211110 1111 22222222 33445555555554444444444444332 2221 223388999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088 288 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 335 (431)
Q Consensus 288 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~ 335 (431)
+.++++|.++.... ........++++++...+.+...+.-+..
T Consensus 562 elaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~l 604 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFL 604 (1133)
T ss_pred HHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHH
Confidence 99999999986532 23345567888888777776655544333
No 164
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.05 Score=53.05 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=79.8
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
...+++..+++...+++..||..+|..|..+...... +..-+-.++...+..-+.+..+.||..|+.+|+.+=......
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 5578888888888899999999999999988864332 222333366777777788888999999999999986322111
Q ss_pred hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
+..+...+..+++++++++||+.|+..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 12456778888888879999998765443
No 165
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.22 E-value=0.02 Score=53.06 Aligned_cols=147 Identities=14% Similarity=0.204 Sum_probs=105.5
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHH-HHhccCChHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQA 180 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L-~~l~~~~~~~~~~ 180 (431)
++..+++.|..+.+...+..|+++|..++...+..-.....-.+..+++.-.+.+.++...|.... .-++.+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 566788888666889999999999999999987666666667777888888877777766666554 4445555432
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.+..+..++...+...-..+++.+..++..-....-..+-..+.|.+++-..+. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 123444555556666777788888888765432222223347899999999999 99999999999887653
No 166
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.22 E-value=0.031 Score=50.72 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=114.7
Q ss_pred hhhHHHH-HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-hh
Q 014088 142 RPALPAL-ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ 219 (431)
Q Consensus 142 ~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~ 219 (431)
.+++..+ ...+++.++.+|..++.+++-.+--+..... ..++.+...+..++..++..|++++..+....+ ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3566544 4788899999999999999988866543332 345667777777788999999999999875432 11
Q ss_pred hHH-------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC----CHhHHH
Q 014088 220 TQC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKK 288 (431)
Q Consensus 220 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~ 288 (431)
... .....+++.+.+.+.+. +++++..|+..++.|...+.-.- ...++..|+-+.-++ +.++|+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 11235677888888888 89999999999998775311100 122444455444433 567887
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088 289 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325 (431)
Q Consensus 289 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 325 (431)
.-..++-.++.... ++ +......+++.+..+.+.+
T Consensus 175 ~L~~Ffp~y~~s~~-~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSSP-EN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCCH-HH-HHHHHHHHHHHHHHHHhCc
Confidence 77777877777553 33 3445566777777776643
No 167
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.18 E-value=0.003 Score=62.86 Aligned_cols=187 Identities=19% Similarity=0.165 Sum_probs=127.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-------------HHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 126 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 126 (431)
+-..++.+|+. +++-..+..++.-+..+.+.. |+.++ ...+|.+++... ......+.+-..+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34455556654 333344555555555544322 22222 346788888884 66677788888899
Q ss_pred HHhhcCCCCCChh-hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---cccH
Q 014088 127 SNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVL 202 (431)
Q Consensus 127 ~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~ 202 (431)
+++..+-|..... ....++|.|++.|.-+|..++..++.++.-+....+.-...-+ ..+++.+..+-.+++ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence 9998875553332 3477899999999999999999999999877655443322222 256777777766654 4688
Q ss_pred HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 252 (431)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 252 (431)
..|++++..+....+...-......++..|.+.|.++ .--+|++|..+=
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTR 1019 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHh
Confidence 9999999999985553333344557889999999999 888999988653
No 168
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.15 Score=47.84 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=91.0
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
.++-.+..-..+++..++..|+++|+|.++..+++...... ..+..++.-| +..+.+|...++.+|..+........-
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 33444444445677899999999999999987766554433 3445555444 445688888888888877643211110
Q ss_pred HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C--CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.-+-.++.-.+..+..+. ++++|..|...++.|+. + -.+.....+..+. ..++-.++++++.+- .|+++....
T Consensus 337 ~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~-~~lllhl~d~~p~va-~ACr~~~~~ 413 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL-APLLLHLQDPNPYVA-RACRSELRT 413 (533)
T ss_pred hhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc-ccceeeeCCCChHHH-HHHHHHHHh
Confidence 111113445577778888 99999999999998885 2 1121111222223 334444566666553 455555555
Q ss_pred cC
Q 014088 298 TS 299 (431)
Q Consensus 298 ~~ 299 (431)
+.
T Consensus 414 c~ 415 (533)
T KOG2032|consen 414 CY 415 (533)
T ss_pred cC
Confidence 44
No 169
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.1 Score=51.29 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=89.7
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088 188 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267 (431)
Q Consensus 188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 267 (431)
+.+-+++.+.++-+|...+.+++.--.++. +.+++..|+..--++.+++||+.|..+|+-++..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------ 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------ 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence 334455666677777665555433222221 2255677777743344999999999999999887777
Q ss_pred HhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 268 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 268 ~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
..+..+++|... ++.||.-++.+|+-.|....... .+..|-.+.+.+..-+++-|+-++.-++...
T Consensus 589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 345667777655 89999999999998887653211 2444455666677788998998888777543
No 170
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.08 E-value=0.043 Score=46.46 Aligned_cols=140 Identities=14% Similarity=0.072 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088 247 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321 (431)
Q Consensus 247 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 321 (431)
.|+..+..++.+ ++.+..+++..+--.+..+|... ...+|..++.+|+.+..+++.+..+.+...++++..++.
T Consensus 98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 344444455555 88888889988877777777543 467899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-----HHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 322 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-----IENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 322 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
++.++...+..|..++..++-.+....- .+....+...+.. +.++.+.+++.+-+.+.++.-++.+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~Y---------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYY---------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHH---------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 9999998899999999999876655432 2333333322222 2344566666666665555555443
No 171
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.08 E-value=0.047 Score=49.59 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=116.8
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChHHHHH
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQA 180 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~ 180 (431)
..+..+ .+.....|..++..+.++........... ...+++.+.+.++.+..+-+..|+.++.-++-. .......
T Consensus 47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344444 44567889999999888887754333332 356788888899888777777788877776644 2223343
Q ss_pred HHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHH--Hhccc---------chhhHHH
Q 014088 181 VIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLD--LLTQN---------YKKSIKK 246 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~--lL~~~---------~~~~v~~ 246 (431)
+++ .+.+.|.+.+.+.. ..+|..++.+|+-++.........+. ....+..+.. ..+.. .++.+..
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 444 57788888887654 34556677777776543221111111 0012331111 11111 1345777
Q ss_pred HHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 247 EACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 247 ~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
.|+.+-+-|... ........++ ..++.|..+|.+.+.+||..|..+|.-+..
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777666655543 2322334333 368999999999999999999999987754
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.05 E-value=0.0027 Score=47.74 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=57.7
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392 (431)
Q Consensus 314 ~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 392 (431)
++..|+.++. +.++.+...|+.-|+.+++..+. .+..+.+.|+.+.+..|++|+|++|+..|..+++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4778888884 45788888899999999988754 3778899999999999999999999999999988
Q ss_pred Hhc
Q 014088 393 TYW 395 (431)
Q Consensus 393 ~~~ 395 (431)
.+.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.96 E-value=0.13 Score=46.60 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=109.2
Q ss_pred hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHH
Q 014088 15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC 93 (431)
Q Consensus 15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~ 93 (431)
.+++..+++.+. ++++.+|+.|+.||+-.+--+.+... ..++.+...++..+..++..|+.++.-+.... ...
T Consensus 26 ~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 333433344555 56679999999999998875543332 24667777777789999999999999886321 111
Q ss_pred HHH-------HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hc---CCChHHHHH
Q 014088 94 RDL-------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IH---SNDDEVLTD 162 (431)
Q Consensus 94 ~~~-------i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~---~~~~~v~~~ 162 (431)
.+. ......+..+.+.+ .+.+++++..++..++.|........ ...++..|+-+ ++ .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 11233455666667 56688999999999999987753333 22344433333 22 235677776
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 014088 163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 197 (431)
Q Consensus 163 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 197 (431)
....+-..+...+.... .+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 66667677776665544 55557777777776553
No 174
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.94 E-value=0.76 Score=49.22 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=86.2
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
..+.+.+|..|++||..+....+... ....+-..+-.-+.+.+..||+.|+..++......++.-... ...+
T Consensus 826 ~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i 897 (1692)
T KOG1020|consen 826 GENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQI 897 (1692)
T ss_pred cCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHH
Confidence 46668999999999999988655432 111233334444566788999999999998876555433332 2345
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
..-+ .++...+|..+...+..+|...|.-.. .......++.-.++....++.-++.++.++.
T Consensus 898 ~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 898 IERI-LDTGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred Hhhc-CCCchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 5555 566789999999999999988644322 1122222333333334447777777777765
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.94 E-value=0.0019 Score=48.53 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.9
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
.++..|+++|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++||.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4578899999655488889999999999999778888888889999999999999999999999999988764
No 176
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.03 Score=55.71 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=142.1
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
.++-+.+|-.+++.|..+... ......+...+++...+..|++.++-+-..|+..+..+|...++ ..++.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL 807 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDL 807 (982)
T ss_pred cCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHH
Confidence 355568999999999999873 35556666779999999999999999999999988888865443 356666
Q ss_pred HHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH-HHHH
Q 014088 107 LAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVI 182 (431)
Q Consensus 107 ~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~ 182 (431)
...-.+. ..++.+-..-.++.++..............++..+++..++++...|..++..+++++.-..-.. ..+.
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 6643221 11344555567888887765444444556778888888888888889999999999985432111 1122
Q ss_pred HhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHh---hcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088 183 EAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII---NHQALPCLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 183 ~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
.++..++.+... ++.-+|+.|+..+..+-.+.....-.+. ..+....+........++.++..|+.++-
T Consensus 888 --ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 888 --EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred --HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344555555544 5678899999999988876653322222 11233344444443325556666655544
No 177
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.21 Score=49.02 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh
Q 014088 73 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152 (431)
Q Consensus 73 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL 152 (431)
..+...+...+..+-...++ .. +-.+.+..+++.. .+++..+|..++.+|..+.............++...+..-+
T Consensus 60 dRIl~fla~fv~sl~q~d~e--~D-lV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl 135 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKE--ED-LVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHHhhhccCch--hh-HHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Confidence 44444455555554433322 12 2234555666666 67788999999999999998665566666677888888888
Q ss_pred cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHh
Q 014088 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 210 (431)
Q Consensus 153 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~ 210 (431)
.+..+.||..|+.+|..+-..+.+. +..+...+..++++ ++++||+.++..+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 8999999999999999997433211 11355667777755 77889998876553
No 178
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.08 Score=52.44 Aligned_cols=218 Identities=20% Similarity=0.124 Sum_probs=143.5
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHhcCCCC-cccHHHHHHHHhHhhcCCh
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~ 217 (431)
...++...|+.+.....+..+.....+|. .+.-.. .... ..++.+.+.+.... ..-...++.++.|++..++
T Consensus 501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~~~-----~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~ 574 (748)
T KOG4151|consen 501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ERSY-----EVVKPLDSALHNDEKGLENFEALEALTNLASISE 574 (748)
T ss_pred ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cchh-----hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence 34678888888887777777777777776 221111 1111 33444444444332 2234558889999998888
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN 296 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 296 (431)
..++.+.+...++.+-+.+... ++..+..++..+.||..+..-....+.+ ...++.+...+...+......++.++..
T Consensus 575 s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~ 653 (748)
T KOG4151|consen 575 SDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAA 653 (748)
T ss_pred hhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccc
Confidence 8888888888888888888788 8999999999999999875555555555 3345656556666666677776666665
Q ss_pred hcCCCCHHHHH-HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088 297 ATSGGSNEQIK-FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 375 (431)
Q Consensus 297 l~~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 375 (431)
++.... ..+. ...-....+.+..++.+.+.+++...+..+.+++..... +.+.+.+..-+..+..+
T Consensus 654 I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e------------i~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 654 ITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE------------IAEKIFETEVMELLSGL 720 (748)
T ss_pred hhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH------------HHHHhccchHHHHHHHH
Confidence 554332 2233 333355788888999999999999999998885544332 34555555556666555
Q ss_pred hc
Q 014088 376 QS 377 (431)
Q Consensus 376 ~~ 377 (431)
+.
T Consensus 721 ~~ 722 (748)
T KOG4151|consen 721 QK 722 (748)
T ss_pred HH
Confidence 43
No 179
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.88 E-value=0.029 Score=47.51 Aligned_cols=123 Identities=14% Similarity=0.143 Sum_probs=92.5
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 89 (431)
.-+|.++=|++..-..+.+.+-+|..++.+++.+.. ++.+....+...++||..++.+..+++..+..|..++..|..+
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD 198 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence 345666666666666666777899999999999987 4567888899999999999999999999999999999998876
Q ss_pred ChHHHH------HHH-HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088 90 SPKCRD------LVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 90 ~~~~~~------~i~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 133 (431)
+.+... .+. -...+..++..+.+.++..+...+.++..+|+.+.
T Consensus 199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 643211 111 11234445555556778889999999999998773
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.27 Score=48.23 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=123.9
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CCh----HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
++-++..|++-+-|. -.+..+|..|+..+.+.-- ..+ +..+.+++.. ...|..+|+++.+.+|..|...++.+
T Consensus 170 ml~rL~~p~l~R~L~-a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLK-ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHHHhHHHHHhhc-cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455666777777776 4566999999999998742 112 3445556544 67889999999999999999888877
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA 166 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 166 (431)
...-.+....-.-...+..+..-+..+...++|......|-.+...+.. ......++|.+-..+.++...||..+...
T Consensus 248 ~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 248 TSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 6432211000000012333333344555668888888888888776422 22345677888888888999999999888
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088 167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213 (431)
Q Consensus 167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 213 (431)
|..+-....-. +-+---++.++..|..++..+.+..+..+.+.+
T Consensus 326 ll~ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 326 LLKIKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 87765433222 211122455666677776666666666665554
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.77 E-value=0.068 Score=46.15 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=98.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 322 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 322 (431)
|+..+..++.+ ++.+..+++.++.-.|..+++.. ...+|-.++.+++.+...++++....+.+.++++.....+
T Consensus 70 aLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 34444455555 88899999999877777777654 2568899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 323 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 323 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
+.++.-.+..|..++.+++..+...+-.++.. .++..=...+.. +..+...+++.+-+...++..++.++
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~-----eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTA-----ERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSH-----HHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCH-----HHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 98888888899999999998877665433211 111111112222 34556778888877666666555543
No 182
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.77 E-value=0.052 Score=53.00 Aligned_cols=229 Identities=12% Similarity=0.137 Sum_probs=148.7
Q ss_pred hhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088 139 EQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 216 (431)
.....++|.|+..+..++ ..+....+..-..+. ..+ ++.++++.+++++...+..+|...+.-+-.+...
T Consensus 289 i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~- 360 (690)
T KOG1243|consen 289 IIASKVLPILLAALEFGDAASDFLTPLFKLGKDLD-EEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH- 360 (690)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcc-ccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh-
Confidence 344567777777776554 233333222222222 221 4458899999999999999998887777766643
Q ss_pred hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
..+..++..++|.+...+.+. ++.+|...+.++..++.. +.. .++...+..+.++-.+.+..+|.+..-+++
T Consensus 361 --Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 361 --LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred --cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh----hhcHHHHHHHHhhCccccCcccccceeeec
Confidence 445677889999999999999 999999999999988752 222 122223444555445557788888888888
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 375 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 375 (431)
.+.....+..+ +.-......+.++++-...+..++.++....+..+..+ +. ...++.+.-+
T Consensus 434 ki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~----------va-----~kIlp~l~pl 494 (690)
T KOG1243|consen 434 KIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE----------VA-----NKILPSLVPL 494 (690)
T ss_pred ccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh----------hh-----hhcccccccc
Confidence 88765432222 22233444555565555666677776665544433222 12 2235667778
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCCCC
Q 014088 376 QSHDNTEIYEKAVKILETYWVEEDED 401 (431)
Q Consensus 376 ~~~~~~~v~~~a~~~l~~~~~~e~~~ 401 (431)
.-++++.++..|-..++.|+..-++-
T Consensus 495 ~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccCcccchhhHHHHHHHHHHhhhhhh
Confidence 88999999999999998888755443
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.016 Score=59.48 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=123.0
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 014088 60 AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 135 (431)
Q Consensus 60 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 135 (431)
..|.+++..+. .+|.++..|.-+|+.+..-+..+.. ..++.+...+..++++.+|.+++-+++-++-..|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 56777777754 5799999999999999765544322 25788999998899999999999999998876543
Q ss_pred CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
. ....-+.+...|++.++.+|+.|+.++.+|..++--+ -.|.+..+..++.++++.++.-|=..+--++..
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 2 2456677888999999999999999999998775333 238999999999999999888887777777654
Q ss_pred ChhhhHHHhhcCChHHHHHHhccc
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
.. .++ +++|-++..|.+.
T Consensus 1066 ~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred cc----chh--hhchHHHHhhccC
Confidence 32 122 4677777777655
No 184
>PRK14707 hypothetical protein; Provisional
Probab=96.68 E-value=1.2 Score=49.45 Aligned_cols=345 Identities=17% Similarity=0.146 Sum_probs=185.9
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CC-HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
++.+.+..+.+...-++. .+..+..+ +...|..++..+.. ++ +.-+..+...-..++.+ ...+..+ +...+-..
T Consensus 177 ~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~-~~q~va~~ 252 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNEL-KPQELGNA 252 (2710)
T ss_pred CCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhC-ChHHHHHH
Confidence 344555555554444554 34444444 44456666665554 44 44444444444444444 4444433 33446666
Q ss_pred HHHhccccchhHHHHHHHHH-HHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHH-hccCChHHHHHHHH
Q 014088 107 LAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIE 183 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~ 183 (431)
++.|.+=++....++++..+ ..++.+. ....... ..+-..|..+-+-++..+-..+...|.. +.. ++...+ -++
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~-~~~ 329 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCK-ALN 329 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhh-ccc
Confidence 67665555554555544444 4455442 2222222 2233333333344566665555555543 443 443333 222
Q ss_pred hCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh-cccchhhHHHHHHHHHHHhhcCCHH
Q 014088 184 AGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 184 ~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~ 261 (431)
...+...++-|+. ++..+...+...|..-....+...+. ++...+..+++-+ +-+ +..+...|+..|..=...+++
T Consensus 330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~ 407 (2710)
T PRK14707 330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLE 407 (2710)
T ss_pred hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChh
Confidence 2334444555544 66666666666665554444544443 3344455555555 444 777777777777765556677
Q ss_pred HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
....+-..|+-..|--+-+=++..++..+..+|.--..+. .+.++-+--.++...|-.+-+.+|..+...+.+.|..-+
T Consensus 408 l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d-~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l 486 (2710)
T PRK14707 408 LRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD-TELCKALDPINVTQALDALSKWPDTPICGQTASALAARL 486 (2710)
T ss_pred hhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc-HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Confidence 7777766665555544455578899999999888776654 355555444455555555557888777766666665544
Q ss_pred HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH-HHHHHHhc
Q 014088 342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA-VKILETYW 395 (431)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a-~~~l~~~~ 395 (431)
..... .+.-+.-.+....|..|...++......| .++-.+..
T Consensus 487 ~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 487 AHERR------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred cccHH------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 43322 23344444556668888888775555554 34434444
No 185
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.62 E-value=0.063 Score=56.79 Aligned_cols=168 Identities=16% Similarity=0.121 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc
Q 014088 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 199 (431)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 199 (431)
..+.|+...++...+ -.....+.+..++..+..+...+|..|+.||..+...++.- +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 345555555555421 11233567788888889889999999999999999887632 3333444556667778888
Q ss_pred ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH
Q 014088 200 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 279 (431)
Q Consensus 200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 279 (431)
.||..|+..+|......+.... .....+.+-+.++ .-.||+.+...+..+|...|+.- .+.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~-----qyY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~-~i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIF-----QYYDQIIERILDT-GVSVRKRVIKILRDICEETPDFS-KIVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHH-----HHHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChh-hHHH--HHHHHHHHh
Confidence 9999999999998877665544 3456677777777 89999999999999998655532 2212 122233333
Q ss_pred ccCCHhHHHHHHHHHHHhcCCC
Q 014088 280 LNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 280 ~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
+++...++.-+..++.++-...
T Consensus 941 ~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhccC
Confidence 4445558888888888886543
No 186
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.57 E-value=0.018 Score=57.59 Aligned_cols=153 Identities=22% Similarity=0.163 Sum_probs=115.7
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 136 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 136 (431)
..++|.+++..+......+..-+.+|.++....|. ....-+ ...++.|++.| .-+|..++..+..++.-+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhcccc
Confidence 46899999988876667777788888888776654 111111 22456666667 7789999999999999888877667
Q ss_pred ChhhHhhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 137 LFEQTRPALPALERLIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 137 ~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
.......++|.++.+=.+.+ ..+|..|+.++..+.+--|...-...+..++..++..|++++.-+|..|.++=.++
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 77777899999999877665 68899999999999984443323344457889999999999989999998776554
No 187
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.55 E-value=0.91 Score=46.55 Aligned_cols=237 Identities=18% Similarity=0.214 Sum_probs=145.7
Q ss_pred hhHHHHHHhhcC-----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC----CCC----cccHHHHHHHH
Q 014088 143 PALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRTV 209 (431)
Q Consensus 143 ~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~~~a~~~l 209 (431)
+++..++.++.+ ...+....++..|...+.-. ...+.+++.++++.|+..+. .+. ..+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 667777777663 24566667777777777664 45566888999999888763 333 56777777777
Q ss_pred hHhhcCChhhhHHH----h--------hcCChHHHHHHhcccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHH
Q 014088 210 GNIVTGDDMQTQCI----I--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 274 (431)
Q Consensus 210 ~~l~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 274 (431)
..+........... . ...-+..+++.+.++. ++.+....+++|.+|+.++.+..+.+++. +..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence 77764322111000 1 1122666777665542 57889999999999999989988888874 233
Q ss_pred HHHHHccC-----CHhHHHHHHHHHHHhcCCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------
Q 014088 275 LVNLLLNA-----EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR-------- 328 (431)
Q Consensus 275 L~~ll~~~-----~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~-------- 328 (431)
.+++=... +..+. +..++.++..- ....+..+++.|++...++++... +++
T Consensus 274 ~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred hcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 33322111 22233 44444444322 245667788999999888877532 222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 014088 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
....++..|.-++...... +.+...+.++.+..| +-+....+-..|.++|+.+-+.+
T Consensus 351 sLp~iL~lL~GLa~gh~~t-------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPT-------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHHH-------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 2345666666666644332 222345667777777 44557778888888888776644
No 188
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.52 E-value=0.064 Score=54.58 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
+.+.+-.-+.++++.-|..++..+..+..... ........+.+-.++.....+.+..+...++.+|..++..-......
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34455556667889999999999888876544 11111122334455555557778889999999999999876545555
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-h
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-M 218 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~ 218 (431)
.....+|.++..+......++..+..++-.++...+. ....+.+...+.+.++.++..+...+.......+ .
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 5678899999999988888888877777665543221 1456778889999999999998888877766544 1
Q ss_pred hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHH
Q 014088 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAII 267 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~ 267 (431)
....-.-..+++.++....+. +.+||..|..+++-+.. ........++
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111111226778888888888 99999999999998876 3344444333
No 189
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.46 Score=47.01 Aligned_cols=279 Identities=15% Similarity=0.061 Sum_probs=159.0
Q ss_pred hhhhhhhHHHHHhhhccC-------CChHHHHHHHHHHHHHcC--CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088 11 ILISLFVDQFFFHCFFSC-------CFGAVQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 81 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~ 81 (431)
|+++.++. .|.++ +++.-.+.|++.+.++.. .....-.-+.+.=+++.++..++++.--++..++.
T Consensus 408 giLsf~~s-----il~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 408 GILSFLLS-----ILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hHHHHHHH-----HHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 67777776 44221 234556788888887765 23333444555667888888999999899999999
Q ss_pred HHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--hhHhhhHHHHHHhhcCCChHH
Q 014088 82 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV 159 (431)
Q Consensus 82 ~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~i~~L~~lL~~~~~~v 159 (431)
.++.+..+-+ +...-..+.+...+.+ .+.+-.++-.|+-++..+..+...... ....+.+..|+.+-+.-+.++
T Consensus 483 ~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 483 FISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH
Confidence 9999954322 2333334566677777 457788888999999988887522211 122334444555555556666
Q ss_pred HHHHHHHHHH-hccCChHHHHHHHHh---CcHHHHHHhcCCC---C---cccHHHHHHHHhHhh---cC--ChhhhHHHh
Q 014088 160 LTDACWALSY-LSDGTNDKIQAVIEA---GVCPRLVELLRHP---S---PSVLIPALRTVGNIV---TG--DDMQTQCII 224 (431)
Q Consensus 160 ~~~a~~~L~~-l~~~~~~~~~~~~~~---~~i~~L~~ll~~~---~---~~v~~~a~~~l~~l~---~~--~~~~~~~~~ 224 (431)
...++..+.. .+..-......+... .++.....++.++ + .+-...|.++|..+. .. +....-.-+
T Consensus 559 LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l 638 (970)
T COG5656 559 LSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL 638 (970)
T ss_pred HHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 6666665542 232222222222220 2222333333332 1 122334444444432 11 111111223
Q ss_pred hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC-HhHHHHHHHHHHHhcCCC
Q 014088 225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGG 301 (431)
Q Consensus 225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~ 301 (431)
.....|.+--++++. ..+.-.+|+..+-+.+..+.+.-. +--|+.+.+.+++.+.. ..-.+++.-++.|+...+
T Consensus 639 e~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 639 EVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 345667777777777 778888888888877654333221 12245555666665554 356678888999988766
No 190
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.48 E-value=0.026 Score=45.60 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=102.0
Q ss_pred HHHHHhcC--CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHH
Q 014088 188 PRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 265 (431)
Q Consensus 188 ~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 265 (431)
..++..|. ...+++|..+.-++..+. +...+ -....+-+.+...+... +.+-...++.++..+-...++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444443 456788998888888884 22222 22323445566666666 6777888999999998888888877
Q ss_pred HH-HhCCHHHHHHHHc--cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHH-HHHHHHHHHHH
Q 014088 266 II-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPR-IVTVCLEGLEN 339 (431)
Q Consensus 266 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~al~~L~~ 339 (431)
+. ..|+++.+..++. .++..++..++.+|..-+.. +.++......+++.|.+..+ +++.. ++..|+-+|++
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77 5788999999998 66888999999999887764 44555566678999999996 45555 77777777664
No 191
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.42 E-value=0.049 Score=47.27 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 110 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l 110 (431)
.....|+++|..++--++..+..+.+...++.++.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456778899999988889999999999999999999954 6799999999999999999998889999999999999999
Q ss_pred cc-ccchhHHHHHHHHHHHhhcC
Q 014088 111 NE-HAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 111 ~~-~~~~~~~~~a~~~L~~l~~~ 132 (431)
+. +.+.+++-.+...|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 64 34677888888777766544
No 192
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.41 E-value=0.3 Score=45.54 Aligned_cols=269 Identities=18% Similarity=0.133 Sum_probs=139.4
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCH-HHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTD-DVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
-+..+....+|..++--|+.-+. +++.+..+..+|.++.+++.+.. ++. .....++.++.-++.+... ...+....
T Consensus 29 ~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~l~~~~~ 106 (361)
T PF07814_consen 29 GLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MHLLLDRD 106 (361)
T ss_pred hcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hhhhhchh
Confidence 45555566899999988998887 79999999999999999999955 333 3333344445555554432 23333444
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhc-
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLS- 171 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~- 171 (431)
.+..+++++.-....++..... ... ..............+.+.+. .....-+..++.++..++
T Consensus 107 ~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~ 179 (361)
T PF07814_consen 107 SLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR 179 (361)
T ss_pred HHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence 5555566664010000000000 000 00000001112222222221 111223344444444442
Q ss_pred -------------cCChHHHHHHHHhCcHHHHHHhcC----CC------------CcccHHHHHHHHhHhhcCChhhhHH
Q 014088 172 -------------DGTNDKIQAVIEAGVCPRLVELLR----HP------------SPSVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 172 -------------~~~~~~~~~~~~~~~i~~L~~ll~----~~------------~~~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
...+...+.+...|+++.++.++. .. +......++++|.+.+..+..+...
T Consensus 180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~ 259 (361)
T PF07814_consen 180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY 259 (361)
T ss_pred HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 111222344566678888888764 11 1124566888888888766655544
Q ss_pred Hhh--cCChHHHHHH-hccc--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--------------CC
Q 014088 223 IIN--HQALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--------------AE 283 (431)
Q Consensus 223 ~~~--~~~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--------------~~ 283 (431)
... .+.++.+... +... ....+...+++.+.|++-++++.+..+...++...+..+... ..
T Consensus 260 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 339 (361)
T PF07814_consen 260 LLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESS 339 (361)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccccccc
Confidence 442 2333333322 2222 034446678899999998887777666655443322221111 12
Q ss_pred HhHHHHHHHHHHHhcCCC
Q 014088 284 FEIKKEAAWAISNATSGG 301 (431)
Q Consensus 284 ~~v~~~a~~aL~~l~~~~ 301 (431)
.+...-++.++.|++.+.
T Consensus 340 ~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 340 FDILILALGLLINLVEHS 357 (361)
T ss_pred chHHHHHHHhHHHheeeC
Confidence 355666777778877654
No 193
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.39 E-value=0.36 Score=45.11 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=110.4
Q ss_pred chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088 115 KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 192 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 192 (431)
..+-+..|..-|..+.... ...-......++-.+++.|.+ .+..+++.|++.|..++.+.+.+..--.+ -.+..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 3444555665444444433 222333446677788888887 67888999999999999887654321111 23455555
Q ss_pred hcCCCCcccHHHHHHH-HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhC
Q 014088 193 LLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG 270 (431)
Q Consensus 193 ll~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 270 (431)
.-.+..+.+...|... +..++...+.. .+..+..++.+. +...-..++..+..++.. +.+....++. .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence 5555556565555544 44444444422 233455555555 666666777788888763 3444444444 5
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
+.|.+++...+.+..||+.|+.+|..+..
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 89999999999999999999999988754
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.29 E-value=0.06 Score=43.54 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=96.3
Q ss_pred HHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088 147 ALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224 (431)
Q Consensus 147 ~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 224 (431)
.++..|. ...+++|..+.-++..+-.. ..+ -....+-+.+-.++...+.+-...++.++..+-...+.....++
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDA---ARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444 35778999999888887421 112 12222334455556666666788888899888887776655555
Q ss_pred -hcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHh-HHHHHHHHHHH
Q 014088 225 -NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE-IKKEAAWAISN 296 (431)
Q Consensus 225 -~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~~ 296 (431)
..|+++.+..++. .. +..++..++.+|..-|.. ...+..+.+ .+++.|-++++. ++.. +|..|+-.|+.
T Consensus 83 ~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d-~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACID-KSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTS-HHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHcc-HHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6688888999998 55 788888888888877664 554555544 578999999954 4555 78888877764
No 195
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.28 E-value=1.6 Score=44.75 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=124.0
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc---cccc----hhHHHHHHH
Q 014088 57 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW 124 (431)
Q Consensus 57 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~---~~~~----~~~~~~a~~ 124 (431)
+.|++..|+.++.+ .........+..|...+. .+.+|..+.+.++++.++..+. .... .++.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 46899999998876 234455555555555554 4678999999999999999985 2222 566666666
Q ss_pred HHHHhhcCCCCCCh---------h----hHhhhHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088 125 TLSNFCRGKPQPLF---------E----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 187 (431)
Q Consensus 125 ~L~~l~~~~~~~~~---------~----~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 187 (431)
++..+......... . .....+..+++.+++ .++.+....++.|-+|+.+.++..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F- 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F- 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-
Confidence 66555443211000 0 022345566666654 478999999999999999998887766542 2
Q ss_pred HHHHHh--cCCCCcccHHHHHHHHhHhhcCC------hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 188 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 188 ~~L~~l--l~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
...+++ ++.....--...+.++..++.+- ...++.+++.|++...++.|... -+.. .+. .+
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~s 340 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--DS 340 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--CC
Confidence 222222 11111111123355555555432 24566677888888888877655 3332 111 33
Q ss_pred HHHHHHHHHhCCHHHHHHHHcc
Q 014088 260 VNQIQAIIEAGIIGPLVNLLLN 281 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~ll~~ 281 (431)
++. ...+....+|.++++|..
T Consensus 341 ~eW-k~~l~~psLp~iL~lL~G 361 (802)
T PF13764_consen 341 PEW-KEFLSRPSLPYILRLLRG 361 (802)
T ss_pred HHH-HHHhcCCcHHHHHHHHHH
Confidence 443 334445567777777653
No 196
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.27 E-value=0.75 Score=40.77 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=141.8
Q ss_pred HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh---hH---hhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014088 95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QT---RPALPALERLIHSNDDEVLTDACWALS 168 (431)
Q Consensus 95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~i~~L~~lL~~~~~~v~~~a~~~L~ 168 (431)
..+..+|.+..++..+ ..-+-+.+..++.+..++-+..-..... .. ...+..++.--.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4567788899999999 7778888999999999998876322221 11 2334444443111 3555555555555
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCC----hHHHHHHhcccchhhH
Q 014088 169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI 244 (431)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v 244 (431)
...++. ...+.+....-+.....++..+.-++...|..++..+..........++..+. .+..-.++.+. +--+
T Consensus 151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 544443 34455666677788888888888889999999999887765555555553333 34466677777 8899
Q ss_pred HHHHHHHHHHhhcC--CHHH-HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 245 KKEACWTISNITAG--NVNQ-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 245 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
+..+...++.+... +... .+++.+..-+..++.+|.+++..++.+|.....-+..+..
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999998763 3333 3444445568999999999999999999999988877653
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.26 E-value=0.0085 Score=33.35 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=26.2
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014088 144 ALPALERLIHSNDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 144 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 173 (431)
++|.+.+++++++++||..|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 198
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.24 E-value=0.62 Score=43.62 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=93.8
Q ss_pred HHHHHHHhHhhc---CChhhhHHHhh-cCChHHHHHHhcccc--hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088 203 IPALRTVGNIVT---GDDMQTQCIIN-HQALPCLLDLLTQNY--KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 276 (431)
Q Consensus 203 ~~a~~~l~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 276 (431)
+..++.+..+.. ......+.+++ ..++..|..++++.. .+.+-..|+..+..+....|.....+.+.|+++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 334555555555 23344455666 677788888887762 467788888999999988899999999999999999
Q ss_pred HHHc-cC---CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088 277 NLLL-NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326 (431)
Q Consensus 277 ~ll~-~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 326 (431)
+.+. .+ +.++-...-.+|+.++.+. ...+.+.+.+.++.+++++.+++
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicLN~--~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICLNN--RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhcCH--HHHHHHHhcChHHHHHHHhCCHH
Confidence 9998 43 6677777778888888865 78888889999999999987653
No 199
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.21 E-value=0.025 Score=54.74 Aligned_cols=132 Identities=8% Similarity=0.071 Sum_probs=86.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088 146 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 225 (431)
Q Consensus 146 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 225 (431)
..++...+ ++.+.+.-|...+......-|+..+ ..+..++.+..+++..||..|++.|..+|..++....
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~---- 95 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS---- 95 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence 33444444 5788888999999988888876655 5678889999999999999999999999998776665
Q ss_pred cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc---cCCHhHHHHHHHHHHHh
Q 014088 226 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNA 297 (431)
Q Consensus 226 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l 297 (431)
.+...|.++|.+. ++.....+-.+|..+...++. +.+..++.-+. .++..+|+.++..|..=
T Consensus 96 -kvaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 96 -KVADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 4567899999988 777777777777777664333 22334444443 55777888888877543
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.15 E-value=0.96 Score=46.03 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=113.6
Q ss_pred HHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC-HHHHHHHHccCC-Hh
Q 014088 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAE-FE 285 (431)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~-~~ 285 (431)
+++++...++.....+++.+++..+.+.++.-....++..+...++|++...+..-.......+ ...+..++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888888888999999999999999986667899999999999999742211111111111 112223333333 36
Q ss_pred HHHHHHHHHHHhcCCCCH--------HHHHHHH--------------HCCChHH-HHhhcC-CCCHHHHHHHHHHHHHHH
Q 014088 286 IKKEAAWAISNATSGGSN--------EQIKFLV--------------SQGCIKP-LCDLLN-CPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~--------~~~~~l~--------------~~~~l~~-L~~ll~-~~~~~v~~~al~~L~~l~ 341 (431)
.-..|+..|+.+...+.. .....+. ......+ +..++. +..+..+.+|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 777788888888775321 0001111 1111333 444454 456677888999999998
Q ss_pred HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 014088 342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~ 395 (431)
..... +...+.+.+++..+..+- .....++++.+..++..+.
T Consensus 654 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 654 EQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 76654 466677788888888873 3336777777777776543
No 201
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.12 E-value=0.9 Score=40.19 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=136.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088 62 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQ 140 (431)
Q Consensus 62 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 140 (431)
+.|-..|.++++.+|..++.+|+.+...-+.. .....-+..++..+.. -.|......++..+..|.+.. ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34566788899999999999999887544421 1112224444444421 135555666677777777443 222222
Q ss_pred HhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh
Q 014088 141 TRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 141 ~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~ 217 (431)
...++..+.+-.. +-....|..+...+..+..+....... +..+++..+++.+.. .||.-...+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344444444332 224677888999998888765444332 223677888888866 578888888888877765443
Q ss_pred hhhHHHhhcCChHHHHHHhc--------ccch---hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088 218 MQTQCIINHQALPCLLDLLT--------QNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~--------~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 286 (431)
+ ....+.+.+.+. .+.+ .-.+..-...|.++...++... .-.+|.|++-|.++...+
T Consensus 157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 234444555442 1111 1234445555666555544432 236889999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 014088 287 KKEAAWAISNATSGGS 302 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~ 302 (431)
|..++.+|...+..-+
T Consensus 225 K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 225 KLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999988876443
No 202
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.09 E-value=0.22 Score=43.31 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHH
Q 014088 285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI 363 (431)
Q Consensus 285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 363 (431)
.....|+..|.-++.-+. .-...+.+...++.+++++. ...+.++..++.+|..++...... ...|
T Consensus 106 ~li~~aL~vLQGl~LLHp-~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------~r~F 172 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHP-PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHHcCc-hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------HHHH
Confidence 345567778877766553 45566678889999999995 467889999999998888766542 5678
Q ss_pred HhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCCCCCC
Q 014088 364 DDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVEEDEDEP 403 (431)
Q Consensus 364 ~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~~e~~~~~ 403 (431)
++.+|+..+..+.. +.+.+++-+....|.-|+.+|....+
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~ 214 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP 214 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence 99999999999964 55899999999999999999877655
No 203
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.07 E-value=0.21 Score=50.97 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=131.9
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 190 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 190 (431)
.++++.-+..|+.-+................+.+-.+.+. +.+.+..+...++.+|..++..-......+. .++++.+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~l 341 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSL 341 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchH
Confidence 5678888999999888888775411222224444444444 4467888999999999999876554433333 3778889
Q ss_pred HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 014088 191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEA 269 (431)
Q Consensus 191 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~ 269 (431)
+..+....+.++..+..++-.++.... .....+.+...+.+. ++.++.+....+........ .....-.-.
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 999988888888888777776665322 124578899999999 99999998877777665322 222222224
Q ss_pred CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 308 (431)
Q Consensus 270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 308 (431)
++++.++....+.+.+||..|..+++.+....+.+....
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k 452 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK 452 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578888888888899999999999998877655444433
No 204
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=1.8 Score=43.46 Aligned_cols=271 Identities=11% Similarity=0.054 Sum_probs=142.5
Q ss_pred HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
..+|...+|-.++..+++.+.-...+-.-..+.+.. ......+.++++. +..+.+...+.+|+.+.....+.-.
T Consensus 532 lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~--- 608 (978)
T KOG1993|consen 532 LNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA--- 608 (978)
T ss_pred HHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh---
Confidence 445555556667777777777665432222222221 2334445555554 5566677777777777643322111
Q ss_pred HcCChHHHHHHh----cc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCCh---HHHHHHHHHHHHh
Q 014088 99 SNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDACWALSYL 170 (431)
Q Consensus 99 ~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~~a~~~L~~l 170 (431)
.....+++.+ .. .+.+-.+...+.+|.++...-.........-++|.+-...+-+++ -..+.+.......
T Consensus 609 --P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~ 686 (978)
T KOG1993|consen 609 --PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTT 686 (978)
T ss_pred --HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHH
Confidence 0111222222 22 234455666777888887764333333334445554444443332 2344444444333
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
..+.+.....+. +++|.+...+..... ....++.++....--.....-.-...++.+.+..++.+- ..+-....+.
T Consensus 687 L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLk 762 (978)
T KOG1993|consen 687 LMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLK 762 (978)
T ss_pred HhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 333332222222 466777777654432 344455555544332211111122336677777777666 5555666677
Q ss_pred HHHHhhcCCHHHHHHHHHhCCHHHHHHHHc--cCCHhHHHHHHHHHHHhcCCCC
Q 014088 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
++..+...++ ........++++.+..-+- .+.+.+...-+.+++.+...+.
T Consensus 763 iveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~ 815 (978)
T KOG1993|consen 763 IVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNP 815 (978)
T ss_pred HHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcCh
Confidence 7777776644 4555556777887777553 3467788888888888877653
No 205
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.02 E-value=0.053 Score=37.04 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 313 (431)
.+.|+|++++++.. +.....+.+.++++.++++.+. +...+|.-|..+|+-++.. .+....+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence 57899999999885 6667777778999999999976 4789999999999998874 36666655544
No 206
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.02 E-value=0.0077 Score=33.53 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=25.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
++|.++++++++++.+|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999874
No 207
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.00 E-value=0.81 Score=44.11 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=80.1
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
.....+.+..++..+.+++..+|..++..|..++..-.+ +......+++..+..-+-+..+.||..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 445578888888888999999999999999988866543 2334455888888888888889999999999998854322
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 252 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 252 (431)
.-.. .....+..++++.++.+||+.|+..+
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1111 23346777777776889998876443
No 208
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.83 E-value=0.34 Score=47.56 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=134.7
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
....++|.+++++...|..+|...+.-+-.....-+ ..+++..+++.+..-+.+.++.+|...+.++..++..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 446799999999999999999888877776665543 236667899999999999999999999999998875322
Q ss_pred hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
...++...+..+..+-.+. +..+|-...-+++.++.. .+..+ +.-......+-+.++-..-|..+.+++....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 2244445556665555544 778888888888877764 22222 2223445555667776677777777777665
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 299 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
..-. +.. +...+++.+.-+.-.++..++..+..++.......++.
T Consensus 476 ~~~~--~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFD--QSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccc--hhh--hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 4321 111 23457888888888888888888888888777665554
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.085 Score=50.24 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=104.0
Q ss_pred hhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 23 HCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 23 ~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
.-|..+.++-+|...+..++.--.+.. +.|++..++.. .++.++++|+.|.-+|+-+|.+.+.
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 345556677788877776664322211 24678888887 6678999999999999999976654
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
.+...+++|..+.+..+|.-.+.+|+-.|.+... ...+..|-.+..+.+.-+|..|+-+++-+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4566778887788999999999999988877421 2345566677778888999999988887764432221111
Q ss_pred HHhCcHHHHHHhcCCC
Q 014088 182 IEAGVCPRLVELLRHP 197 (431)
Q Consensus 182 ~~~~~i~~L~~ll~~~ 197 (431)
+ .++...+.+++.+.
T Consensus 660 v-~~I~k~f~~vI~~K 674 (926)
T COG5116 660 V-KRIIKKFNRVIVDK 674 (926)
T ss_pred H-HHHHHHHHHHHhhh
Confidence 1 14556666666543
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.72 E-value=0.31 Score=49.45 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=124.0
Q ss_pred HHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHH--HHHHhhcCCCh-H
Q 014088 82 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 158 (431)
Q Consensus 82 ~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~lL~~~~~-~ 158 (431)
++++++...+.....+.+.++...+.+.+..-.+.+++..+...+.+++...+..........+. .+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77888888888889999999999999999877788999999999999998764443333322222 33344444444 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 159 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 159 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
.-..++..|+.+..+.++....... +.+......++..+... ...........+.+.+++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence 7777777777776554321110111 11122222222222211 11111221222226666666
Q ss_pred cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHH
Q 014088 239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS 295 (431)
Q Consensus 239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 295 (431)
+..+..+.+|+|++.+++..+++..+.+.+.++++.+.++-... ...++..+...+-
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 65788999999999999998888888888898888877654333 4455555555443
No 211
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.69 E-value=1.7 Score=40.03 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=117.3
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHh-CC-HHHHHHHHccC-----C--------HhHHHHHHH
Q 014088 229 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW 292 (431)
Q Consensus 229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~v~~~a~~ 292 (431)
++.+.+.|... ...+...++..|..++. .+......+... ++ .+.+-+++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888888888 77888899999999988 666666666652 22 44555555321 1 289999999
Q ss_pred HHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH
Q 014088 293 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 371 (431)
Q Consensus 293 aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 371 (431)
.+..+.....+...+.+++ .+.+..+..-+..+++++....+.+|..-+-.+..-.. ..+..+-....+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhcCHHHHHH
Confidence 9999999888777777664 56788889988888889999999999864433332211 12444445667888
Q ss_pred HHHhhcCCCH----HHHHHHHHHHHHhcC
Q 014088 372 IENLQSHDNT----EIYEKAVKILETYWV 396 (431)
Q Consensus 372 l~~l~~~~~~----~v~~~a~~~l~~~~~ 396 (431)
|..+-..+++ .+++.|...|..++-
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 9998887777 999999999988775
No 212
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.67 E-value=0.42 Score=39.46 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcCC-ChH----hHHHHH------hCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 33 VQFEAAWALTNIASG-TSE----NTRVVI------DHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 33 ~~~~a~~~L~~l~~~-~~~----~~~~~~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
+|..|+.+|..++.. ++. .-..+. ..+.-+.|+. ++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888764 211 011111 1223444544 5678999999999999999876554332221111
Q ss_pred C-------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hHhhhHHHHHHhhcCCChHH
Q 014088 101 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEV 159 (431)
Q Consensus 101 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~~~~~v 159 (431)
. .-..|+..|....+..+....+.++..+....|..+.. ....++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 23345555656668889999999999999988666544 34667777778888999999
Q ss_pred HHHHHHHHHHhccCC
Q 014088 160 LTDACWALSYLSDGT 174 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~ 174 (431)
+..++.+++-+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998876543
No 213
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.67 E-value=1.6 Score=43.25 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh
Q 014088 72 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151 (431)
Q Consensus 72 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l 151 (431)
++.-+..-+..|.++..+-+ ..+....+++.++..+. +..+.-...-++..++... .........+|.|...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp---~rv~~~kiLP~L~~el~---n~~~vp~~LP~v~~i~~~~--s~~~~~~~~~p~l~pi 357 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFP---ARVLFQKILPTLVAELV---NTKMVPIVLPLVLLIAEGL--SQNEFGPKMLPALKPI 357 (700)
T ss_pred CcHHHHHHHHHHHHhhccCC---HHHHHHhhhhHHHHHhc---cccccccccchhhhhhhcc--chhhhhhhhhHHHHHH
Confidence 33334444445555543333 23444456777777763 2233333333444444432 2222334577777777
Q ss_pred hcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH
Q 014088 152 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 230 (431)
Q Consensus 152 L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 230 (431)
++.. +.++....+.-+--|.+.-+ .+ -+...+++.|...+.+.+..++..++..+...+..-+ -..+...++|
T Consensus 358 ~~~~~~~~~~l~i~e~mdlL~~Kt~--~e-~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP 431 (700)
T KOG2137|consen 358 YSASDPKQALLFILENMDLLKEKTP--PE-EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILP 431 (700)
T ss_pred hccCCcccchhhHHhhHHHHHhhCC--hH-HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHH
Confidence 7743 22332222222222222111 11 2233677888888888999999999999999887554 2345667888
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014088 231 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310 (431)
Q Consensus 231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 310 (431)
.+.++.....+..++..++-+++.++.. .....-...+..+.+..+..++.+......+..++....... ..+.
T Consensus 432 ~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~ 505 (700)
T KOG2137|consen 432 RLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--VEVM 505 (700)
T ss_pred HhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--eeee
Confidence 8888876555889999999999988732 111111123445555566678888888888888777654211 3344
Q ss_pred HCCChHHHHhhcCCCC
Q 014088 311 SQGCIKPLCDLLNCPD 326 (431)
Q Consensus 311 ~~~~l~~L~~ll~~~~ 326 (431)
...+++.+..+...+.
T Consensus 506 ~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 506 AENVLPLLIPLSVAPS 521 (700)
T ss_pred hhhhhhhhhhhhhccc
Confidence 5567777777665543
No 214
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.67 E-value=0.053 Score=52.76 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088 197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 276 (431)
Q Consensus 197 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 276 (431)
.++.++..|.-++..++.-+.+... .-+|.++..|...++|.+|..|+-.++.++.......... -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 5778888888888887654332222 4678899999744399999999999998876422222222 34578
Q ss_pred HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 277 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 277 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
+-|.+.+..||+.|+.++.++...+. +.-.|.+..+..++..+|..+...|--.+..+...+..
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 88899999999999999999987552 22357788888889888888888877777777665543
No 215
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.63 E-value=0.98 Score=50.53 Aligned_cols=263 Identities=9% Similarity=0.098 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHhcCC---ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHH
Q 014088 71 PTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 147 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 147 (431)
++..++..|+..|..++.. ..+....-.+..++.++..++.++.+.++++.++.++.++...... ....+.+.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWkt 1224 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWKS 1224 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcHH
Confidence 4567777788877777631 1121112233456788888887788899999999999998775421 22334454
Q ss_pred HHHhhc----CCChHHHHHHHHHHHHhccCChHHH-----HHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCCh
Q 014088 148 LERLIH----SNDDEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 148 L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 217 (431)
+..++. +.++.+...+..++..+..+.-... ..+ ..++..+..+.... +.++...|+..|++++..-.
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 544444 5677888888888877664321100 011 13344444444333 46677778887776621100
Q ss_pred ---------------------------hhhHH--------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-C---
Q 014088 218 ---------------------------MQTQC--------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G--- 258 (431)
Q Consensus 218 ---------------------------~~~~~--------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--- 258 (431)
..... -+-..++..|..+..+. +.+||..|+.+|-.+.. +
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence 00000 00111233344445666 89999999999987765 1
Q ss_pred -CHHHHHHHHHhCCHHHHHHHHccC-------------------C-------HhHHHHHHHHHHHhcCCCCHHHHHHHH-
Q 014088 259 -NVNQIQAIIEAGIIGPLVNLLLNA-------------------E-------FEIKKEAAWAISNATSGGSNEQIKFLV- 310 (431)
Q Consensus 259 -~~~~~~~l~~~~~i~~L~~ll~~~-------------------~-------~~v~~~a~~aL~~l~~~~~~~~~~~l~- 310 (431)
+++....+.. +++-++++.+... + .+....|+..+.++.. .....+.
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft----~fFd~L~~ 1456 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV----KFYPTVNP 1456 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3344444444 3455555554321 0 1222333444444432 1122211
Q ss_pred -HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 311 -SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 311 -~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
-.+++..|..++..++..+...+..+|.+++....
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 13466677777778888999999999999987554
No 216
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.62 E-value=1.5 Score=38.81 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=125.9
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
.|. ++++.+|..|+.+|..+...-+.. .....-+..|+.+..+ .+......++.++..+.....-..... ..
T Consensus 7 ~Lt-sed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~--~~ 80 (262)
T PF14500_consen 7 YLT-SEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA--VK 80 (262)
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--HH
Confidence 454 567899999999999887644322 1222335666665544 455555555666666663322111111 11
Q ss_pred ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHH
Q 014088 102 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 102 ~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
.+..+.+... +......|..+..++..+..+...........++..+++.+. ..||.-...+...+..+...-+-
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 2223332221 122456777888888888776422222233567778888877 45888888887777776654431
Q ss_pred HHHHhCcHHHHHHhcC--------C--CCc-c-cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088 180 AVIEAGVCPRLVELLR--------H--PSP-S-VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 247 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~--------~--~~~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 247 (431)
....+.+...+. . +++ . .+..--..|.+....++... .-.+|.|++-|.++ ...++..
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHHHHH
Confidence 123333444332 1 122 2 33444455555544444332 25789999999999 8889999
Q ss_pred HHHHHHHhhc
Q 014088 248 ACWTISNITA 257 (431)
Q Consensus 248 a~~~L~nl~~ 257 (431)
++.+|..++.
T Consensus 228 ~L~tL~~c~~ 237 (262)
T PF14500_consen 228 SLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 217
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.49 E-value=1.5 Score=38.11 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=116.0
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 61 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 61 i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
++.|+. +-+..++..+...+.+|..++.+....... +++.+..+. ...+.+.+..+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 344555 344588999999999999999766111222 234444444 45555555667777777766542111
Q ss_pred hHhhhHHHHHHh--h------c--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHH
Q 014088 140 QTRPALPALERL--I------H--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT 208 (431)
Q Consensus 140 ~~~~~i~~L~~l--L------~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~ 208 (431)
+.+..++.. + . +...+.......++..++...++... .+++.+..++ .+.++.++..++..
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHH
Confidence 333333322 1 1 12344555556778888877766322 4677788888 67788888889999
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCH
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEF 284 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~ 284 (431)
+..++...--... .....+.+.+..+..+.+.+..+..+..+... .+..........++..+.++....+.
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 9999843211111 23444555555554566666555444444432 11222233444567777777766653
No 218
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.47 E-value=1.2 Score=41.53 Aligned_cols=275 Identities=18% Similarity=0.173 Sum_probs=142.0
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCC
Q 014088 60 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL 137 (431)
Q Consensus 60 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~ 137 (431)
-+..++.-+++ .+..+|..++--|+.-+.+ +.++..+...|....+.+.+...++..+...++.++.. ++.+.....
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 35666666663 5678888888888888875 46899999999999999999655555355555444444 444434444
Q ss_pred hhhHhhhHHHHHHhhcCC-ChHHHHHHH-HHHHHhccCChHHHHHHHHhCcHHHHHHhc---------CCCCcccHHHHH
Q 014088 138 FEQTRPALPALERLIHSN-DDEVLTDAC-WALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPAL 206 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~-~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---------~~~~~~v~~~a~ 206 (431)
..........+..++... ..++....- .-=.++++ ..+ ..+..+...+ .....+.+..++
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk--------~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal 171 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK--------VQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLAL 171 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhH--------HHH-HHHHHHHHHHhccccccccCCcccccccHHH
Confidence 333345556666666611 000000000 00000110 110 1112122222 122344566667
Q ss_pred HHHhHhhcC--------------ChhhhHHHhhcCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHhhc
Q 014088 207 RTVGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITA 257 (431)
Q Consensus 207 ~~l~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~ 257 (431)
.++..++.. .+.....+.+.|++..++.++.+ .. +...-..++++|-|.+.
T Consensus 172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~ 251 (361)
T PF07814_consen 172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF 251 (361)
T ss_pred HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 766666411 11223344556778888888752 10 12233456777777776
Q ss_pred CCHHHHHHHHHh--CCHHHHHHHH-c---cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH---Hh----hcCC
Q 014088 258 GNVNQIQAIIEA--GIIGPLVNLL-L---NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL---CD----LLNC 324 (431)
Q Consensus 258 ~~~~~~~~l~~~--~~i~~L~~ll-~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L---~~----ll~~ 324 (431)
.+.++..+++.. +.++.+...+ . .....+...+++.+.|+..+++ +.+..+...++...+ .. ....
T Consensus 252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~-~~c~~~~s~~l~~~~~~i~~~~~~~~~~ 330 (361)
T PF07814_consen 252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP-SACEEFASPKLGQQLGLIVTSFFCVLSL 330 (361)
T ss_pred cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc-cchHhhhhhHhccchHHHHHhhcccccc
Confidence 555555555542 2333333332 2 2234446778999999987653 333333333221111 11 1111
Q ss_pred -------CCHHHHHHHHHHHHHHHHhhh
Q 014088 325 -------PDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 325 -------~~~~v~~~al~~L~~l~~~~~ 345 (431)
..-+..-.+++++.|+++..+
T Consensus 331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 331 PNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccccchHHHHHHHhHHHheeeCc
Confidence 122566677888888877654
No 219
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.45 E-value=0.029 Score=44.42 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=62.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 392 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~ 392 (431)
++..|..-+.++++.++..|+..|..++++++.. |+..+.+..+++.|..+... .+++|++++..++.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 4555666677789999999999999999998764 67778888999999999766 89999999999999
Q ss_pred HhcCCCC
Q 014088 393 TYWVEED 399 (431)
Q Consensus 393 ~~~~~e~ 399 (431)
.|-..-.
T Consensus 107 ~W~~~f~ 113 (144)
T cd03568 107 QWADEFK 113 (144)
T ss_pred HHHHHhC
Confidence 8764443
No 220
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.38 E-value=1.9 Score=40.39 Aligned_cols=194 Identities=16% Similarity=0.221 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH---HhhcCCCCCChhhHhhhHHHHHHhhcC
Q 014088 78 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQTRPALPALERLIHS 154 (431)
Q Consensus 78 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~~~~i~~L~~lL~~ 154 (431)
.|+.+|-.+....+.....+...+++..+++.+... ...++. +-..+. ............ ...+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E--------v~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE--------VDFALEENKNEEAGS-GIPPEYKESSVD--GYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH--------HHHHHhcccccCCCC-CCCCCccccccc--ccccCH
Confidence 356666666655555566778899999999998321 111222 111111 000000000000 000001
Q ss_pred CChHHHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088 155 NDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQ 227 (431)
Q Consensus 155 ~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (431)
......+..+..+..+.. +.....+.+++ ..++..|..++.+. .+.+-..++.++..+....+.....+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 112334444555554444 23334444566 55666777777764 367888899999999999998888899999
Q ss_pred ChHHHHHHhc-cc--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC
Q 014088 228 ALPCLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 283 (431)
Q Consensus 228 ~l~~L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 283 (431)
+.+.+++.+. .. ...++....-.+++.+|-+ ....+.+.+.+.++.+++++.+++
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999987 33 2455555555677777766 777888888999999999998764
No 221
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.33 E-value=0.68 Score=45.75 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=103.4
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCC
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~ 216 (431)
......++|.|...+++.+..++..++..+..+++.-+. ..++.-+++.+..+ +.+.+..++..++-|++.++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999999988876552 24555677888776 35577889999999999998322
Q ss_pred hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHH--HHHHHHH
Q 014088 217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK--KEAAWAI 294 (431)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~--~~a~~aL 294 (431)
+ ...-...+..+.+..+.. ++.+......+..++....+.. ..++...++|.++.+...+.-... ...+..+
T Consensus 461 D----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 461 D----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI 534 (700)
T ss_pred H----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence 2 121123455566666666 7888888888888877642332 344455688888888776643222 2234444
Q ss_pred HHhcCC
Q 014088 295 SNATSG 300 (431)
Q Consensus 295 ~~l~~~ 300 (431)
..+...
T Consensus 535 ~~ml~~ 540 (700)
T KOG2137|consen 535 RLMLSA 540 (700)
T ss_pred HHHHhh
Confidence 444443
No 222
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.28 E-value=2 Score=38.20 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=140.0
Q ss_pred HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH---HHh--hcCChHHHHHHhcccch-hhHHHHHHHHH
Q 014088 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ---CII--NHQALPCLLDLLTQNYK-KSIKKEACWTI 252 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~--~~~~l~~L~~lL~~~~~-~~v~~~a~~~L 252 (431)
+.+.+.|.+..++..+...+.+.+..++.+..++-...-..+. ..+ +..++..+++- -.+ +++...+...+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 4467779999999999988888888888888888654321111 111 22233333333 212 45555555566
Q ss_pred HHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCC----hHHHHhhcCCCCHH
Q 014088 253 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPR 328 (431)
Q Consensus 253 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~ 328 (431)
..+.++ +.....+..+.-+......++.+..++...|..++..+..... .....+...+. .+.-..++++.+.-
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk-~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHK-SVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhH-HHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 666665 6667777788888999999999999999999999998887653 33333343332 33355677788888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 014088 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL 404 (431)
Q Consensus 329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~ 404 (431)
++..++..++.++........ ....+.+...++.+..++.+++..++-.|=.+.-.+.....+.++.
T Consensus 228 tkrqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V 294 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV 294 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH
Confidence 888899998888765544332 2455555566777777877777777766666665555555555554
No 223
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=3.7 Score=41.07 Aligned_cols=280 Identities=14% Similarity=0.060 Sum_probs=156.6
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhcC--CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 014088 58 HGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 127 (431)
Q Consensus 58 ~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 127 (431)
.|+++.+...|.. .+..-.+.|++.++++.. ..+....-+++.-.++.++..+ +++.--++..+|..++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 4899999998832 224445678888888764 2222223444444556666666 6667778899999999
Q ss_pred HhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCcccHHH
Q 014088 128 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIP 204 (431)
Q Consensus 128 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~ 204 (431)
.+..+- ...............++++++-.++..|+.++..+..+.. ....... +.++.++.+-+.-+.++...
T Consensus 486 ~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 995543 3334445677778888888888899999999988776652 1222222 34444555444444444444
Q ss_pred HHHHHh-HhhcCChhhhHHHhh---cCChHHHHHHhcccc-----hhhHHHHHHHHHHHhhc------CCHHHHHHHHHh
Q 014088 205 ALRTVG-NIVTGDDMQTQCIIN---HQALPCLLDLLTQNY-----KKSIKKEACWTISNITA------GNVNQIQAIIEA 269 (431)
Q Consensus 205 a~~~l~-~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~ 269 (431)
++..+. .++..-......+.. ...++....++.++. .++-+..|...|..+.. ..++..+.+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~- 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV- 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence 443332 222211111111111 122333333443331 12234444455544332 34444444433
Q ss_pred CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhhhh
Q 014088 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~ 346 (431)
...|.+--++.+.-.++-.+|+..+-+...... +..+ ..-|+.+.+.+++..... .-.+.+.-++.|++..+..
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFMSK-EIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-Hhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 355555555666677777888888876654221 1111 123566677777766653 5567778889999887744
No 224
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.20 E-value=2.6 Score=40.33 Aligned_cols=265 Identities=11% Similarity=0.101 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC----CCCChhhHhhhHH
Q 014088 71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALP 146 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~ 146 (431)
+++-+-...++++..+-..-......+.. ..+..+....++.+++..-.+...+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 45666666677766655444333333322 122223333334456777777777777776543 2222345578899
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088 147 ALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 225 (431)
Q Consensus 147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 225 (431)
.+..+|+.+-.+..-++...++.+.+..+ ......+ ..+++.|+.-.--....-.-...+.|..+....+... ..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~ 196 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA 196 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence 99999998878888888888888876544 1111011 0222322211100122223445556655554333222 22
Q ss_pred cC----ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcC
Q 014088 226 HQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS 299 (431)
Q Consensus 226 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 299 (431)
.+ ++..+-+++.+. .. -.++...|..+...-+ +.....+.. ++..++.-|++. ..+.++.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp -S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 22 333444555555 22 2346666666665322 233333332 455555556544 66666666666666655
Q ss_pred CCCHHHHHHHHH---CCChHHHHhh-----c-CCCCHHHHHHHHHHHHHHHHhh
Q 014088 300 GGSNEQIKFLVS---QGCIKPLCDL-----L-NCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 300 ~~~~~~~~~l~~---~~~l~~L~~l-----l-~~~~~~v~~~al~~L~~l~~~~ 344 (431)
..+++..-...+ .|+...+.+- + +-..+.-++.+.-++.+++...
T Consensus 273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 444444333332 2333333321 1 1123334555666677766443
No 225
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.19 E-value=3.3 Score=40.23 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=80.5
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
+..++.+..++.++.....++.++-.+..+. .........++..|....... +....+-.++.||+...-..
T Consensus 178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~----- 249 (464)
T PF11864_consen 178 VDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH----- 249 (464)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----
Confidence 3444444334444444455555555555542 222233344555555554333 55666677777777544222
Q ss_pred HhCcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCChhhhHHHh-hcC--ChHHHHHHhcccchhhHHHHHHHHHH
Q 014088 183 EAGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQ--ALPCLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 183 ~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
..+..|..+|.. .+..+.+-|+..+..+..+.......-+ -.. +++.+...++.. +..+-.+.+..+.
T Consensus 250 --~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 250 --SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLIN 326 (464)
T ss_pred --HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHH
Confidence 245667777732 2344566788888887766522221112 222 788888888877 7777777777777
Q ss_pred Hhh
Q 014088 254 NIT 256 (431)
Q Consensus 254 nl~ 256 (431)
++.
T Consensus 327 ~ll 329 (464)
T PF11864_consen 327 RLL 329 (464)
T ss_pred HHH
Confidence 776
No 226
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.11 E-value=1 Score=43.01 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=116.3
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC----cccHHHHHHHHhHhhcCChh
Q 014088 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~ 218 (431)
.....+.+.+.+++...+..++..+..++.+. .....++...++..|..++.+++ ..+...++.++..+....-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 45567788888888888888888888888665 46677888889999999987754 3556667777766655432
Q ss_pred hhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 219 QTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.....+...++.....+..-. .+..+-..|+..+-++..+++...+.+.+.--+..|+..++..+..++..|+..+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 111122223333333333211 1456677788888888887777777777777899999999999999999998888888
Q ss_pred cCCCCHHHHHHHH
Q 014088 298 TSGGSNEQIKFLV 310 (431)
Q Consensus 298 ~~~~~~~~~~~l~ 310 (431)
.....++.++.+.
T Consensus 241 ~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 241 FRKAPDDKRFEMA 253 (713)
T ss_pred HhhCChHHHHHHH
Confidence 8777655444443
No 227
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.08 E-value=3.6 Score=39.99 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=137.2
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
...++.|..++..|..++......-. ... ..+...+. ...++-...-+.+|..|+.+..+. ...+.+..+.+
T Consensus 40 ~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L 112 (464)
T PF11864_consen 40 NQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL 112 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence 33457888888888888764432110 000 11111222 233433444556666666555443 22345566666
Q ss_pred HHHhccc--------------------------cchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhc-CCChH
Q 014088 107 LAQFNEH--------------------------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDE 158 (431)
Q Consensus 107 ~~~l~~~--------------------------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~-~~~~~ 158 (431)
...+... .+.......+..+.++.+.+ .........+++..++.+-. ..+++
T Consensus 113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~ 192 (464)
T PF11864_consen 113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence 6655211 12233445555666666665 33344455666666666643 33444
Q ss_pred HHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088 159 VLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 235 (431)
Q Consensus 159 v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 235 (431)
....++..+-.+... +++... .++..|..... ..+....+-+++.||+...-.+ ..+..|..+
T Consensus 193 di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~i 258 (464)
T PF11864_consen 193 DIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDI 258 (464)
T ss_pred HHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHH
Confidence 556666666555432 111111 23333444422 2267778888999998754322 235667777
Q ss_pred hccc-----chhhHHHHHHHHHHHhhcCCHHHHHHHHH-hC--CHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 236 LTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-AG--IIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 236 L~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
|.++ .+..+.+-|+..+..+..+..+....-+. .- +++.+...++.++..+-.+++..+.++..
T Consensus 259 L~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 259 LRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 7321 14566778888888888754222221122 22 68888888888887777788888888774
No 228
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.95 E-value=0.34 Score=39.29 Aligned_cols=143 Identities=9% Similarity=0.025 Sum_probs=82.0
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.+..+|....++.+|.+++++|+.+-.-++...+.+.... +.- .-............. ........ +...-
T Consensus 14 ~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----ee~y~ 84 (160)
T PF11865_consen 14 ILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----EEYYP 84 (160)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----HHHHH
Confidence 4555777777799999999999999875554433222111 100 001111111111111 11111111 22223
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
.-.+..|++.|+...-..-...++.++.++.+............++|.++..++..+...++..++-|+.+.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 335788888885444444445667777777755444446667889999999999777788877776666553
No 229
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.72 E-value=2.6 Score=36.65 Aligned_cols=140 Identities=20% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHH-hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088 146 PALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224 (431)
Q Consensus 146 ~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 224 (431)
|.+.. +-+..+++.+...+.+|..++.++..... -+++.+..+...+.......+.+.+..+-..++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44443 55567899999999999999887621112 234556666666666666667777777766555332
Q ss_pred hcCChHHHHHH---------hcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHH
Q 014088 225 NHQALPCLLDL---------LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI 294 (431)
Q Consensus 225 ~~~~l~~L~~l---------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL 294 (431)
+.+..++.. .......+.....+.++..+|...++... .+++.+..++ +..+..++..++.++
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223323332 11121344455556778888886666222 3577788888 677888999999999
Q ss_pred HHhcCCC
Q 014088 295 SNATSGG 301 (431)
Q Consensus 295 ~~l~~~~ 301 (431)
..++...
T Consensus 147 ~~Lc~~~ 153 (234)
T PF12530_consen 147 APLCEAE 153 (234)
T ss_pred HHHHHHh
Confidence 9998544
No 230
>PRK14707 hypothetical protein; Provisional
Probab=94.71 E-value=9.6 Score=43.07 Aligned_cols=349 Identities=15% Similarity=0.085 Sum_probs=168.5
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
|.+=++.....+++.++..-....+..++.+-..++-..|-.+-+=++..+...+...|..=..+.++.+..+ ....+.
T Consensus 256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~ 334 (2710)
T PRK14707 256 LSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLS 334 (2710)
T ss_pred HhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHH
Confidence 3333333444555555544332334444444333322222223233666666666665555444555554333 223355
Q ss_pred HHHHHhccccchhHHHHHHHHH-HHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 105 PLLAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
..++-|.+=++..+.+.++..| ..++.+..-.......++-..|..+-+=++..+-..+...|..-..++....+ -++
T Consensus 335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-~~~ 413 (2710)
T PRK14707 335 TALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-GLD 413 (2710)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-hcc
Confidence 5666665555555555544444 44554432222222233333333333445556655666666543334444434 333
Q ss_pred hCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088 184 AGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 184 ~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
...+...++-|.. ++..+...+...|..-...+.+..+.+--.++...|--+-+-+ +..+...++..|..=....++.
T Consensus 414 ~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l 492 (2710)
T PRK14707 414 PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRL 492 (2710)
T ss_pred hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHH
Confidence 3444555555544 7777777777777776665554443332223333333333445 6777777776666544444666
Q ss_pred HHHHHHhCCHHHHHHHHccCCHhHHHHHHHH-HHHhcCCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088 263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA-ISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a-L~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l 340 (431)
.+.+--.++...|-.+-+-++......|+.. -..+... .+.... ...++...+-.+-+.++......+...|...
T Consensus 493 ~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~---~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~ 569 (2710)
T PRK14707 493 RKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE---LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAER 569 (2710)
T ss_pred HhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc---hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Confidence 5555444444445444455665554444433 3444321 222222 2223333333444566666555555555554
Q ss_pred HHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088 341 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391 (431)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 391 (431)
+..... ....|...+.-..+..|...++.+.-..|...|
T Consensus 570 l~~~~~------------~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~L 608 (2710)
T PRK14707 570 LADEPQ------------LPKDLHRQGVVIVLNALSKWPDTAVCAEAVNAL 608 (2710)
T ss_pred hhcchh------------hHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence 432222 244454444455566666766655544444444
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.21 Score=44.04 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
+...+..| .+.++.....++..+..|+...+.........++..+++-+++....|-..|+.++..+...-.+.+...
T Consensus 90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~- 167 (334)
T KOG2933|consen 90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE- 167 (334)
T ss_pred HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44456666 7778999999999999999987765566667888889999999999999999999999987765554432
Q ss_pred HhCcHHHHHH-hcCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 183 EAGVCPRLVE-LLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 183 ~~~~i~~L~~-ll~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
+..++. ++.. ++.-++..+-.+|..++...... .+++.|...+.+. ++.++..++.+..++..
T Consensus 168 ----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 ----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred ----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 233333 3322 34457888888998887654322 3567788888888 89999988877776654
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.50 E-value=3.9 Score=37.71 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=113.2
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc-CChhhhHHHhhc-C-ChHHHHHHhcccc---h---------hhHH
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY---K---------KSIK 245 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~---~---------~~v~ 245 (431)
+++.. ++.+.+.|......+...+++.|..++. ........+... + -.+.+.+++.... . +.+|
T Consensus 53 iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 53 ILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 44433 6778888888888888999999999998 444555555422 1 2334555553220 1 2888
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHH-hcCCC--CHHHHHHHHHCCChHHHHh
Q 014088 246 KEACWTISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCD 320 (431)
Q Consensus 246 ~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~l~~L~~ 320 (431)
...+..+..+.. .++..+..+++ .+.+..+.+-+..++.++....+.++.. +.... .+.....+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888876666555 66777777776 5568888888888888999999999985 43332 2344445566778999999
Q ss_pred hcCCCCH----HHHHHHHHHHHHHHHhhh
Q 014088 321 LLNCPDP----RIVTVCLEGLENILKAGE 345 (431)
Q Consensus 321 ll~~~~~----~v~~~al~~L~~l~~~~~ 345 (431)
+....++ .+...+-..|..++....
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 8887776 788888888888775443
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.45 E-value=0.28 Score=40.93 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHH---------------HcCChHHHHHHhcc-----ccchhHHHHHHHHHHHh
Q 014088 70 SPTDDVREQAVWALGNVAGDSPKCRDLVL---------------SNGALMPLLAQFNE-----HAKLSMLRNATWTLSNF 129 (431)
Q Consensus 70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---------------~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l 129 (431)
++.......++..|+|++......+..+- +...+..|+..+.+ .....-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44555667788899999876655432221 12245666666644 12345667889999999
Q ss_pred hcCCCCCChhhH--hh--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhcC
Q 014088 130 CRGKPQPLFEQT--RP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLR 195 (431)
Q Consensus 130 ~~~~~~~~~~~~--~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~ 195 (431)
++....+..... .. .+..|+.++++.+..-|..++.++.|++-..+.... +.. .++++.++--|.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~-LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEW-LLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHH-hcCchhhhhHHHHHhhcc
Confidence 988644444432 23 377888888888777788899999999977654422 333 244555444443
No 234
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.45 E-value=0.53 Score=45.33 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=74.0
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G 258 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~ 258 (431)
+++ +.+..+++-+.+++..||..++++|..++..-.+ +...+-.+++..|.+-+-+. .+.||.+|+.+|+.+-. .
T Consensus 88 ~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 88 LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccC
Confidence 444 6777788888889999999999999998865433 23334447778888888777 89999999999998865 3
Q ss_pred CHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHH
Q 014088 259 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAI 294 (431)
Q Consensus 259 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL 294 (431)
++++. ....+..+++. ++.+||+.|+.-+
T Consensus 165 neen~-------~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEENR-------IVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 34322 23456666654 4788887765433
No 235
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.44 E-value=0.31 Score=33.33 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 014088 202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270 (431)
Q Consensus 202 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 270 (431)
.+.+++++++++.... ....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+....+-+.|
T Consensus 4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4679999999987543 4455557799999999998876889999999999999876 56565555544
No 236
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.38 E-value=0.42 Score=39.94 Aligned_cols=82 Identities=10% Similarity=0.178 Sum_probs=64.1
Q ss_pred ChHhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhH
Q 014088 48 TSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118 (431)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~ 118 (431)
+....+.+++.||+..|+.+|.. .+......++.||..+.....+....+...+.+..++..| .+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence 45677788888999999998853 3457888999999999877766555566678889999998 7889999
Q ss_pred HHHHHHHHHHhh
Q 014088 119 LRNATWTLSNFC 130 (431)
Q Consensus 119 ~~~a~~~L~~l~ 130 (431)
+..++.+|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 237
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.35 E-value=0.57 Score=53.36 Aligned_cols=282 Identities=13% Similarity=0.146 Sum_probs=154.1
Q ss_pred hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHH------hCCChHHHHHh-hCCCCHHHHHHHH
Q 014088 8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVI------DHGAVPIFVRL-LSSPTDDVREQAV 80 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~L~~l-L~~~~~~v~~~a~ 80 (431)
++....+.+++..+..++. .++++++..+...+..+...... ..... .+..+..+..+ +..+++.++....
T Consensus 473 ~~~~~~~~~~~~~~~~~~~-~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~ 550 (2341)
T KOG0891|consen 473 FSGYSLTLFVQQCVDSYLE-ADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVL 550 (2341)
T ss_pred hhhhhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHH
Confidence 3445667777766666665 56678888887776665543222 11111 11222333332 2235566655544
Q ss_pred HHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHH
Q 014088 81 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEV 159 (431)
Q Consensus 81 ~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v 159 (431)
..+. . ..-....+.+.+..+...+ ++..-.++..+...+++++..+|....... ...+..+..+..+.-..+
T Consensus 551 ~~l~---~---~~~~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~ 623 (2341)
T KOG0891|consen 551 SSLN---E---RFDAQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMART 623 (2341)
T ss_pred hhhc---c---chhhhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHh
Confidence 4433 1 1112233334444455555 666677888888888888887652222221 112222222222333322
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
...+..-+..+....+..+...++ ..+..++..+...++.+...+..+++.|+...........+ ..++.+.+.+...
T Consensus 624 ~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~ 701 (2341)
T KOG0891|consen 624 KEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQ 701 (2341)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHh
Confidence 333333333333333333332332 45566777788888888899999999999876644444455 6777788877766
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHH-HhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCC
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSG 300 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 300 (431)
.+..-|..+.++++++.....-...... ..-++..+...+... ...++..++..++++...
T Consensus 702 s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 702 SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 4677788899999999873211111111 122345555555544 566777888888766543
No 238
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.34 E-value=0.47 Score=38.48 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 264 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 264 (431)
.+++.|+++|+++.+..+|.++++++|.+.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 45778888898886799999999999999886565444
No 239
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=2.3 Score=42.15 Aligned_cols=231 Identities=14% Similarity=0.092 Sum_probs=131.5
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC---CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc--
Q 014088 98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ---PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-- 172 (431)
Q Consensus 98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-- 172 (431)
++.|+++.++..-.+-+...+....-.+|+.+...... .......-.=|.+..-|+-.|..||.+|+..+.++.-
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 35566666665543333334444445566666554311 1111223344567778888999999999999998762
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC----ChHHHHHHhcccchhhHH
Q 014088 173 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 173 ~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~ 245 (431)
+++ .....+++ .-...+..+|.++-+.+|..|..-+..... ....++-.. ++..+..-+......+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s----~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS----KFWEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH----HHHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 222 12233444 335678899999999999998776666543 122233222 333333333333356888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 325 (431)
......|..+... |.. ..+.+. ++|.+-..+++.+..||..+...|..+-...- -.+..-=-++.++.-|..+
T Consensus 281 ~svf~gl~~~l~n-p~s-h~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra----~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 281 CSVFKGLPMILDN-PLS-HPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA----AKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhHhcCcHHHHcC-ccc-hhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhhh----hhhhccccHHHHHHHHhcc
Confidence 8888887777664 321 223333 45666667788888999988888887733211 1111111244455555555
Q ss_pred CHHHHHHHHHHHHHH
Q 014088 326 DPRIVTVCLEGLENI 340 (431)
Q Consensus 326 ~~~v~~~al~~L~~l 340 (431)
+..+....+..|-+.
T Consensus 354 ~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIFNS 368 (1005)
T ss_pred ccHHHHHHHHHHHHh
Confidence 555554444444433
No 240
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.20 E-value=5.2 Score=37.91 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=137.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCChHHHHHHhcc------ccchhHHHHHHHHHHHhhcCCC
Q 014088 64 FVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNE------HAKLSMLRNATWTLSNFCRGKP 134 (431)
Q Consensus 64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~~ 134 (431)
+..+++..++.-+-.++.....++...+ ..++.++++-+.+.+-+++.+ .++.-.+..+..+|..+|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666777777788888888876443 345667777777777777743 2344456668888999998875
Q ss_pred CCChhhHhhhHHHHHHhhcCC-ChH------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccH-HHHH
Q 014088 135 QPLFEQTRPALPALERLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL-IPAL 206 (431)
Q Consensus 135 ~~~~~~~~~~i~~L~~lL~~~-~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~-~~a~ 206 (431)
-.....+-.-||.+..++... +++ ....+..+|..++...+.. ..++..|.++.+.+.-..++...- ..++
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~alal 174 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALAL 174 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence 555555567889999888743 333 6788999999999886554 558888999999887655443332 2333
Q ss_pred HHHhHhhcCCh---hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-H-HHHHH----HHhCCHHHHHH
Q 014088 207 RTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-N-QIQAI----IEAGIIGPLVN 277 (431)
Q Consensus 207 ~~l~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l----~~~~~i~~L~~ 277 (431)
.++.-.....+ +....+.. ++..+..=+... +...+-+.|..|..+....+ + ....+ +-.....-+..
T Consensus 175 ~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~ 251 (698)
T KOG2611|consen 175 KVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA 251 (698)
T ss_pred HHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence 33333332211 11111111 133333334444 56778888888885543211 1 11111 11122334556
Q ss_pred HHccC-CHhHHHHHHHHHHHhcC
Q 014088 278 LLLNA-EFEIKKEAAWAISNATS 299 (431)
Q Consensus 278 ll~~~-~~~v~~~a~~aL~~l~~ 299 (431)
+|++. .+.-|..|+....+++.
T Consensus 252 IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 252 ILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHhcccCchhcChHHHHHHHHHH
Confidence 66665 45555555555555543
No 241
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.19 E-value=1.2 Score=36.71 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=89.3
Q ss_pred cHHHHHHHHhHhhcCChhh-----hHHHh------hcCChHHHHH-HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088 201 VLIPALRTVGNIVTGDDMQ-----TQCII------NHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 268 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~-----~~~~~------~~~~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 268 (431)
+|..|+.+|..++...+.. -..++ ..+.-+.|+. ++.++ ++++|..|+.++..+-.++.......-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 5677777777777652211 11111 1223334444 44555 9999999999999998875544433322
Q ss_pred hC-------------------CHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 014088 269 AG-------------------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 328 (431)
Q Consensus 269 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 328 (431)
.+ +...|+..+..+ +..+....+.++..+..+......+.=.-..++..+..++.+.|+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 234455555555 6778888999999998877554433212223455666667778899
Q ss_pred HHHHHHHHHHHHHHhh
Q 014088 329 IVTVCLEGLENILKAG 344 (431)
Q Consensus 329 v~~~al~~L~~l~~~~ 344 (431)
++..++.++..++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9988888888876543
No 242
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.18 E-value=1.9 Score=41.02 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=130.9
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 134 (431)
Q Consensus 55 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 134 (431)
.++...+..|+.++.++++.-|.....+|.++-..-...|..+.. .....+.+.+.......-...++.+++.+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 445567888999999999999999998888887544444444432 3345566666555566667778888888887753
Q ss_pred CCC-hhhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 135 QPL-FEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 135 ~~~-~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
... .....-+...++.+...+. .........++......++..... ++..+++.=-..++.-....+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 332 2233444456666666553 233455555555555554443331 223333333333333333445555555
Q ss_pred hcCCh-hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHHcc----C-C
Q 014088 213 VTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN----A-E 283 (431)
Q Consensus 213 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~----~-~ 283 (431)
....+ ..... +...+...+.+.+.++ +..|.+.|+....| +... .++. ..++|.+..-+.. . +
T Consensus 283 l~~~~~~~f~~-i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 283 LEVLPPEEFQK-IMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HTT--HHHHHH-HHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHhcCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 54332 22222 2235677788888888 88888888765432 2222 2222 2256666666644 2 6
Q ss_pred HhHHHHHHHHHHHhcCCC
Q 014088 284 FEIKKEAAWAISNATSGG 301 (431)
Q Consensus 284 ~~v~~~a~~aL~~l~~~~ 301 (431)
..|+..|..++.-+...+
T Consensus 355 ~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp TTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 678888888888777654
No 243
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=6.1 Score=43.88 Aligned_cols=269 Identities=13% Similarity=0.100 Sum_probs=130.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhh
Q 014088 65 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 143 (431)
Q Consensus 65 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 143 (431)
+..|..+++..+-.+..+++.++...+. ..+-....+.....+....++-.|.--..+++.+-++. ..........
T Consensus 882 ~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 882 VNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 3334445666666666666666643221 11112245566666755556655555666777777765 3334444456
Q ss_pred hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc--------
Q 014088 144 ALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------- 214 (431)
Q Consensus 144 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~-------- 214 (431)
.+..+..+.+++ .+.|+.+++.++..+..........+++ .-+..+..++.+..+ .......+.+....
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCc-chhhhhhhhccccccchhHHHH
Confidence 677777777766 5699999999999887655444343333 223334444433211 22222222222211
Q ss_pred ---------CChh-hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCH
Q 014088 215 ---------GDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 284 (431)
Q Consensus 215 ---------~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 284 (431)
.+.. .....+....+-...-++.++ +..++.++..++.++-.-.+.... -.-+++.++.++.....
T Consensus 1037 ittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~~~ 1112 (2067)
T KOG1822|consen 1037 ITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSSYL 1112 (2067)
T ss_pred HHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcchhh
Confidence 1110 001111112222333344555 788888888888877653222111 11245566666655433
Q ss_pred hHHHHHHHHHHHhcCCCCHH---HH-------------HHH-H-HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 014088 285 EIKKEAAWAISNATSGGSNE---QI-------------KFL-V-SQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 285 ~v~~~a~~aL~~l~~~~~~~---~~-------------~~l-~-~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~ 342 (431)
-.|......+..+......+ .. ... . +.|.--.+..++. ..|.+..+.....+.+++.
T Consensus 1113 i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1113 ILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred hhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 33333333333332211000 00 000 1 2333334455554 3456677777777777543
No 244
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.04 E-value=2.4 Score=40.72 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=113.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCC
Q 014088 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 137 (431)
Q Consensus 61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 137 (431)
...+++.+.+++...+..++..|..++.+.. ....+....++..|.+++.+.. ..++....+.+++.+-.+.-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4577888888888888889999999987765 5667777788999999985433 45677777777777776642111
Q ss_pred hhhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 138 FEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
......++.....+.+. -+..+...|+..+-++..+.+...+.+.+.--++.++..+...+..+...|+..+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 11223344444444432 3567788899999999888877767777777889999999999888888888888887655
Q ss_pred Ch
Q 014088 216 DD 217 (431)
Q Consensus 216 ~~ 217 (431)
.+
T Consensus 244 a~ 245 (713)
T KOG2999|consen 244 AP 245 (713)
T ss_pred CC
Confidence 43
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.96 E-value=0.12 Score=40.98 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=61.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE 392 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~ 392 (431)
++..|..-++++++.++..|+..|..++++++.. |+..+.+.++++.+..+.. ..+++|++++..++.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 4566666777789999999999999999987553 6777888889999998864 788999999999999
Q ss_pred HhcCCCC
Q 014088 393 TYWVEED 399 (431)
Q Consensus 393 ~~~~~e~ 399 (431)
.+-..-.
T Consensus 111 ~W~~~f~ 117 (142)
T cd03569 111 AWALAFR 117 (142)
T ss_pred HHHHHhC
Confidence 8765433
No 246
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.92 E-value=4 Score=38.22 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-cc--CCHhHHHHHHHHHHHhcCCCCHH-----------HHH
Q 014088 242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LN--AEFEIKKEAAWAISNATSGGSNE-----------QIK 307 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~--~~~~v~~~a~~aL~~l~~~~~~~-----------~~~ 307 (431)
..-|..|+-.+..++....+....++.. .+..++.-. .+ .+++-+..|+..++.++..+... ...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 4456677888888876433333322221 222232211 12 37788899999999998766210 234
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088 308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387 (431)
Q Consensus 308 ~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 387 (431)
.+....+++-|. --....|-++..|++.+..+-..-. .+.+ .+.++.+...+.+++.-|+..|
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~l--~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQL--LQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHHH--HHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHHH--HHHHHHHHHHhCCCCcchhhhh
Confidence 445555666665 1123466777888887776543322 2222 3357888888999999998887
Q ss_pred HHHH
Q 014088 388 VKIL 391 (431)
Q Consensus 388 ~~~l 391 (431)
..++
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 6543
No 247
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.33 Score=42.84 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=96.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
.+...+..|.+.++...-..+..+..++...++.....+. ..+..+++-+ ++....+-+.|+.++.-+..........
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888665544333222 1445566666 5667788899999999888763222222
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
.....+-.|+.--..++.-++..|-.+|..+..+.... .+++.|+..+.+.++.++..++.++.+...
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 22333322222223446678999999998888765433 356778888999999999998877766543
No 248
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.65 E-value=6.4 Score=37.03 Aligned_cols=307 Identities=10% Similarity=0.042 Sum_probs=150.7
Q ss_pred ChHHHHHHHHHHHHHcCCCh--HhHHHHHhCCChHHHHHhhC----C-------CCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088 30 FGAVQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLS----S-------PTDDVREQAVWALGNVAGDSPKCRDL 96 (431)
Q Consensus 30 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~----~-------~~~~v~~~a~~~L~~l~~~~~~~~~~ 96 (431)
+..-|..|-..|.+...... ..+..+. .-++.+++.++ + .+..+..+|+.+|+.+..+..- ...
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i-~~~ 82 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI-VST 82 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH-Hhh
Confidence 34667777777776544221 2222222 22444444332 1 2678889999999998754321 111
Q ss_pred HHHc---CChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 014088 97 VLSN---GALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLS 171 (431)
Q Consensus 97 i~~~---~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~ 171 (431)
+... -.+...+..+.. +.+..+....+|+|+.=--............++..+..+-+ -+...+....+.++.++.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 1111 134445555532 23445555555555442211111111122233333333333 456778889999999998
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hh---HHHhhcCC---------hHHHHHHh
Q 014088 172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QT---QCIINHQA---------LPCLLDLL 236 (431)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~---~~~~~~~~---------l~~L~~lL 236 (431)
...+.....-.. ..++.++..+-+....++..|..+...+...-+. .. ....+... .+.+.+++
T Consensus 163 ~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi 241 (372)
T PF12231_consen 163 SQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI 241 (372)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 777654322211 3677777777777777777766655555422111 11 11222222 33366666
Q ss_pred cccchhhHHHHHHHHHH-HhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCC
Q 014088 237 TQNYKKSIKKEACWTIS-NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQG 313 (431)
Q Consensus 237 ~~~~~~~v~~~a~~~L~-nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~ 313 (431)
.+. +......-+|... -+.....-..-...+ ..+...-..++++++.+|..|..+...+.... +....+.....
T Consensus 242 ~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l- 318 (372)
T PF12231_consen 242 KSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL- 318 (372)
T ss_pred hCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-
Confidence 663 2222322333333 333221110111111 13333334556779999999999888886522 11111111111
Q ss_pred ChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 014088 314 CIKPLCDLLNCP-DP----RIVTVCLEGLENILKA 343 (431)
Q Consensus 314 ~l~~L~~ll~~~-~~----~v~~~al~~L~~l~~~ 343 (431)
+..++...++.+ .. ++...++..+++++..
T Consensus 319 L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 319 LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 234444444432 22 6778888888888754
No 249
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.43 E-value=1.3 Score=37.04 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=72.9
Q ss_pred CCCCcccHHHHHHHHhHhhcCChhhhHHHh----------------hcCChHHHHHHhccc-----chhhHHHHHHHHHH
Q 014088 195 RHPSPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQN-----YKKSIKKEACWTIS 253 (431)
Q Consensus 195 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~ 253 (431)
.+++......++.+|+|++....... .++ ....+..|+..+..+ ....-....+.++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34555667778888899887654332 222 123466677776551 13445667888999
Q ss_pred HhhcCCHHHHHHHHHh--CC--HHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 254 NITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 254 nl~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
|++.. ++.++.+++. +. +..|+.++.+.+..-|.-++.+|.|++...
T Consensus 84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~ 134 (192)
T PF04063_consen 84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT 134 (192)
T ss_pred HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence 99987 7888888863 33 778888888887666778999999999864
No 250
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.39 E-value=0.37 Score=34.82 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=58.5
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088 229 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 308 (431)
Q Consensus 229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 308 (431)
+...+.-+.++ ...+|..++..|.++..... ....-..+++..+...++++++-|-.+|+..|..++..........
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45567777888 89999999999999998544 1222234577788888999999999999999999988664334333
No 251
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.31 E-value=2.8 Score=42.66 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=78.6
Q ss_pred HHHhhcCChHHHHHHhcccc-------hhhHHHHHHHHHHHhhcCCHHHHHHHHHh--------CCHHHHHHHHcc----
Q 014088 221 QCIINHQALPCLLDLLTQNY-------KKSIKKEACWTISNITAGNVNQIQAIIEA--------GIIGPLVNLLLN---- 281 (431)
Q Consensus 221 ~~~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--------~~i~~L~~ll~~---- 281 (431)
..+.+.+++..++++...+. ..+....|+.+|.-+..- |+....+... ..+..+++....
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 34556778888888886543 244455566555554443 5555555432 123334333322
Q ss_pred CCHhHHHHHHHHHHHhcCCCC----------------------------------HHHHHHHHHCCChHHHHhhcCCCC-
Q 014088 282 AEFEIKKEAAWAISNATSGGS----------------------------------NEQIKFLVSQGCIKPLCDLLNCPD- 326 (431)
Q Consensus 282 ~~~~v~~~a~~aL~~l~~~~~----------------------------------~~~~~~l~~~~~l~~L~~ll~~~~- 326 (431)
.+++++..|+.+|.|+..... ......+...+++..|+++++-+.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 278999999999998876431 112223345688999999998654
Q ss_pred ----HHHHHHHHHHHHHHHHhhhhh
Q 014088 327 ----PRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 327 ----~~v~~~al~~L~~l~~~~~~~ 347 (431)
..++..|+.+|.-+.+.....
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tVr 778 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTVR 778 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHHH
Confidence 368888999998888776643
No 252
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.18 E-value=5.2 Score=38.14 Aligned_cols=260 Identities=12% Similarity=0.030 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhcCCCC--CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-
Q 014088 120 RNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH- 196 (431)
Q Consensus 120 ~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~- 196 (431)
..+-..|..+....+. ........++..|+.++++.|+.-|......+.++-........ .+...+...+.+++..
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~-~Ir~~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS-FIRKSINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcCc
Confidence 3455556666555422 22233467889999999999999999999999887654444433 3333555666677654
Q ss_pred CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088 197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 276 (431)
Q Consensus 197 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 276 (431)
....-...++.+++.+..+...-...-...-....++.+.+.+.-......-..++..+...++.....++ ..++
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~ll 261 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLL 261 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHH
Confidence 55677888999999988763311111111111233444555553344455555666666554444333222 2233
Q ss_pred HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc
Q 014088 277 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 356 (431)
Q Consensus 277 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 356 (431)
+.=-..+..=...-+.-+..++....+.....+ ...+...+..++++.+.+|.+.|+..+.|=--..--.+
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~-------- 332 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ-------- 332 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--------
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--------
Confidence 322233444334455666666665554444432 22356777888889999999998876443211000000
Q ss_pred chHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088 357 NLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 357 ~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
....+- --..+.|.+. .+|=|..++..|..++..+.+-
T Consensus 333 --~~~~i~-p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 333 --NSRVIL-PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp --THHHHH-HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred --ChHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 011111 1123444443 3455888888888888776653
No 253
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.15 E-value=0.98 Score=37.99 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088 247 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321 (431)
Q Consensus 247 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 321 (431)
.|+..|..++.+ |+.+..+++..+--.+...|... ...+|..++.+++.+..++++...+.+....+++.+.++
T Consensus 119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 344444455555 78787788877644455555432 356888999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 322 LNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 322 l~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
++..+.--+..+..++..++-++...
T Consensus 198 me~gSElSktvaifI~qkil~dDvGL 223 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGL 223 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhH
Confidence 99888777788888888887665543
No 254
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.97 E-value=1 Score=42.09 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------CCC
Q 014088 83 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SND 156 (431)
Q Consensus 83 L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~ 156 (431)
+-+++.... ...+.+.+..+.+-+-+..+....-|+.|+..+..|++..+.... .-+...+..++. +.+
T Consensus 194 ~Pnl~~~e~--D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 194 FPNLCLREE--DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHHHS--HH--HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-TTT-
T ss_pred cCccCCCHH--HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHhhCCccc
Confidence 445554322 245566666777777674444456677888899999875321111 112223333333 346
Q ss_pred hHHHHHHHHHHHHhccCChH------------HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088 157 DEVLTDACWALSYLSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224 (431)
Q Consensus 157 ~~v~~~a~~~L~~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 224 (431)
..-+..|+..++.++..... ....+....++|.|. --.+..+-++..|++.+..+-..-+. +.+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l- 344 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL- 344 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH-
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH-
Confidence 77788899998888754421 122334444445444 11123455677788888777654321 112
Q ss_pred hcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088 225 NHQALPCLLDLLTQNYKKSIKKEACWTI 252 (431)
Q Consensus 225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L 252 (431)
.++++.++..|.++ +.-|+..|+.++
T Consensus 345 -~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 -LQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 25899999999999 888998888764
No 255
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.93 E-value=0.88 Score=37.13 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=79.0
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CC
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GN 259 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 259 (431)
.....+..+++++++.-|..++..+...+..++. +.+. -...+..++++++.+....+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788999999999999999999888876532 2222 225678889999887677888999999998775 45
Q ss_pred HHHHHHHHHh---CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 260 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 260 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
++..+++... ++++.++++++. ......++.+|..+....
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 6656665543 235555555554 466677777777776543
No 256
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.92 E-value=0.94 Score=35.61 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=59.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA 387 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a 387 (431)
.+..|..-++++++.++..|+..|-.++++++.. |+..+.+.++++.+..+... .++.|+++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ki 107 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-----------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKI 107 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 4556667778889999999999999999998764 77888888889888888742 579999999
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
..++..|-.
T Consensus 108 l~li~~W~~ 116 (139)
T cd03567 108 IELLYSWTL 116 (139)
T ss_pred HHHHHHHHH
Confidence 999987764
No 257
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.75 E-value=1.2 Score=32.19 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
...+..+ +++.+.+|..++..|..+..... ........++..+...++++++-+--+|+.++..++...+.
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455566 67889999999999999998865 34444578888999999999999999999999999877654
No 258
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.28 E-value=1.9 Score=35.15 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=74.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC---
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--- 133 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--- 133 (431)
..+..+..+|+++++.-|-.++..+...+..++. +.+.+ ...+..++..|++.....+++.++.++..+...-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3556778888998888888888888888866521 12212 2357888999977778888999999988887644
Q ss_pred CCCChhhH----hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088 134 PQPLFEQT----RPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 134 ~~~~~~~~----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
+.-..... ..+++.++++++. ......++.+|..+....+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 22111122 3444455555554 5666777777777765444
No 259
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.09 E-value=1 Score=37.61 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHhcCC---------CCcccHHHHHHHHhHh
Q 014088 143 PALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRH---------PSPSVLIPALRTVGNI 212 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~v~~~a~~~l~~l 212 (431)
.....+++.+.+..... ..+..|. .|-..+....+.+++.|++..|+.+|.. .+......+++|+..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34445666665543322 2222222 2233445667788888999999888743 2335677789999888
Q ss_pred hcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 256 (431)
+.........+-..+.+..+...|.++ +..+|..++..|+.+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 876554444444678899999999888 8999999999998876
No 260
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.08 E-value=1.1 Score=35.00 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=58.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc---CCCHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS---HDNTEIYEKAVKI 390 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~---~~~~~v~~~a~~~ 390 (431)
++..|..-++++++.++..|+..|-.++++++.. |+..+....++..+..+.. ..+++|++++..+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-----------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~l 106 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-----------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALEL 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-----------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4666667778889999999999999999988653 6777777778888888865 4689999999999
Q ss_pred HHHhcC
Q 014088 391 LETYWV 396 (431)
Q Consensus 391 l~~~~~ 396 (431)
+..+-.
T Consensus 107 l~~W~~ 112 (133)
T cd03561 107 ILAWSE 112 (133)
T ss_pred HHHHHH
Confidence 987655
No 261
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.01 E-value=14 Score=36.86 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHhhcC---CHHHHHHHHH--hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH
Q 014088 229 LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 303 (431)
Q Consensus 229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 303 (431)
+..+.++|.+. ...+|-..+.+.+|+..+ +++.....-+ +..+..+.+-+.+..+-+|..|+..+..+..-+..
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 56688889888 889999989999998863 2211111111 22455566666777899999999999998765432
Q ss_pred HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 304 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 304 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
-..+ ...++....+.+.....-++..|...+..++...
T Consensus 380 ~~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 380 TVGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred ccch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 1111 2235666777888889999999999999987654
No 262
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=91.80 E-value=1.2 Score=35.16 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=54.9
Q ss_pred hHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcC---CCHHHHHHHHH
Q 014088 315 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSH---DNTEIYEKAVK 389 (431)
Q Consensus 315 l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~---~~~~v~~~a~~ 389 (431)
+..|..-+. .+++.++..|+..|..++++++.. |...+...++++. +..+.+. ...+|+.+...
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~ 108 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLA 108 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHH
Confidence 444444444 468888899999999999998764 6777788888887 8877652 35699999999
Q ss_pred HHHHhcCC
Q 014088 390 ILETYWVE 397 (431)
Q Consensus 390 ~l~~~~~~ 397 (431)
++..|-..
T Consensus 109 li~~W~~~ 116 (141)
T cd03565 109 LIQAWADA 116 (141)
T ss_pred HHHHHHHH
Confidence 99887653
No 263
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.74 E-value=12 Score=35.53 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=91.6
Q ss_pred hccCCChHHHHHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCChHH-
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKC- 93 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~- 93 (431)
|....+.+-|..|+....+.+... ...++.+.+.=+.+.+-++|.+ ++...+..++..|..+|+...-.
T Consensus 19 L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAs 98 (698)
T KOG2611|consen 19 LLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELAS 98 (698)
T ss_pred HhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhcc
Confidence 445566688899999999988743 2356668888788888888865 23455667778888888764311
Q ss_pred HHHHHHcCChHHHHHHhccccchh------HHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc
Q 014088 94 RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 153 (431)
Q Consensus 94 ~~~i~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~ 153 (431)
...++. .|+.++..+....+++ +...+..+|..++...+........|.++.+.++-.
T Consensus 99 h~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 99 HEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred CHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 123332 5888999886555554 888899999999998766666677899999987755
No 264
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.49 E-value=2.1 Score=43.41 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=90.0
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhcC----CC-----hHHHHHHHHcCChHHHHHHhc---cccchhHHHHHH
Q 014088 60 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNAT 123 (431)
Q Consensus 60 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~-----~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~ 123 (431)
.+..+..+++. .++.++..|+-+++.+.. .. ............++.+...+. ...+.+-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34455555554 456677777777777642 21 000011122234566666664 334567777888
Q ss_pred HHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CC
Q 014088 124 WTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PS 198 (431)
Q Consensus 124 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~ 198 (431)
.+|+|+-.. ..++.+...+... +..+|..|+++|..+....+.... +.+..++.+ .+
T Consensus 512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTED 573 (618)
T ss_dssp HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-
T ss_pred HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCC
Confidence 899998543 5778888887765 678899999999988776665433 566677654 45
Q ss_pred cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088 199 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249 (431)
Q Consensus 199 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 249 (431)
.++|..|+..|... ++.. ..+..+...+....+..|.....
T Consensus 574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence 66777776655432 2322 23556677776654555554433
No 265
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.32 E-value=7.7 Score=32.38 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=55.4
Q ss_pred hhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088 10 CILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89 (431)
Q Consensus 10 ~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 89 (431)
++++..+++.++--++ +++..++..|+..+..+....--+ -...+|.++.+..++++.++..|...+..+...
T Consensus 3 s~l~Qryl~~Il~~~~--~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 3 SALVQRYLKNILELCL--SSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3566666664444333 456799999999998877532111 123789999999999999999999999999866
Q ss_pred ChH
Q 014088 90 SPK 92 (431)
Q Consensus 90 ~~~ 92 (431)
.+.
T Consensus 76 ~~s 78 (187)
T PF12830_consen 76 HES 78 (187)
T ss_pred hHH
Confidence 554
No 266
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.98 E-value=1.7 Score=49.72 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=120.3
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088 55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 134 (431)
Q Consensus 55 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 134 (431)
+.+.+.+..+...+..+.-.++..+...+++++..++...-..+....+..+..+. .+.-..+...+..-+..+....+
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHH
Confidence 44456666677777778888999999999999987764322222222222222211 11112222222222222222111
Q ss_pred CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhh
Q 014088 135 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIV 213 (431)
Q Consensus 135 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~ 213 (431)
..........+..++..+.+.+..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..+.++++++.
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1122233455667777778888888899999999998766544444444 555666655544 45566788999999998
Q ss_pred cCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088 214 TGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 258 (431)
Q Consensus 214 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 258 (431)
........... ...++..+.+.+.......+|.++...++++...
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 76543222222 2245666777777776778889999998877664
No 267
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=90.98 E-value=13 Score=34.53 Aligned_cols=126 Identities=13% Similarity=-0.004 Sum_probs=77.1
Q ss_pred hhhhhhhhhhHHHHHhhhc------------cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----
Q 014088 8 FECILISLFVDQFFFHCFF------------SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----- 70 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~------------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----- 70 (431)
-+.|+.|...+|.+-.+|. ...+-.+...++.||+|+..++...++...+......+++.+..
T Consensus 76 dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~ 155 (532)
T KOG4464|consen 76 DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERN 155 (532)
T ss_pred cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 3456666666655444432 12334788999999999999999999999998888888776532
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHH-HHHHHcCChHHHHHHhccc--------------cchhHHHHHHHHHHHhhcCC
Q 014088 71 PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEH--------------AKLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~~l~~~--------------~~~~~~~~a~~~L~~l~~~~ 133 (431)
-...+...=++.|.-+..-.+..| ..+.+.++++.+.+.+... .+....-.++.++.|+..+.
T Consensus 156 ~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 156 FPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 112222233334444433233334 4556778888888888421 11233344666677777665
No 268
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=13 Score=40.22 Aligned_cols=269 Identities=12% Similarity=0.111 Sum_probs=123.8
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----C---CChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S---NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 185 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 185 (431)
.+..+++.....++.++......... .+ .+.+.++++ . ...++...+..+|.-++.+.=.....-.-.+
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 44566777777777777765321111 11 333333333 2 2445666666666666544211111111125
Q ss_pred cHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHH----hhcCChHHHHHHhcccchhhHHHHHHHHHH--HhhcC
Q 014088 186 VCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCI----INHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAG 258 (431)
Q Consensus 186 ~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~----~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~ 258 (431)
+++.+..+-+ ..|..+...|+..+++++..-...+... -..+.++.+.. ..+ ...+..+++|.+- +++..
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~ 1005 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADL 1005 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHH
Confidence 5666666653 4677888888888888864321101111 11223333333 222 3455556666432 33322
Q ss_pred CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH----HHH-HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088 259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA----AWA-ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 333 (431)
Q Consensus 259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a----~~a-L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 333 (431)
..+ -+.-+..|.++.+.+++.+....+..+| +|- +.-+..... .+. ..+-+. +.++....+.....
T Consensus 1006 ~~d-sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~-~q~--~~ewng-----keiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1006 CED-SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQP-IQN--VSEWNG-----KEIQKQWTETSCLT 1076 (1610)
T ss_pred hcc-chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccc-ccc--hhhhcc-----hhHhhhhhhhhhhh
Confidence 111 1233445666667776665543333221 111 111111100 000 000000 01122233455566
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 014088 334 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL 404 (431)
Q Consensus 334 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~ 404 (431)
+.+|.+++...-+. + ...|.|....++ .+.-+..+..+.++++.-.|.+.+++..-+=...++.
T Consensus 1077 isgIaklf~e~fk~--l---lnln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~l 1140 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKL--L---LNLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKL 1140 (1610)
T ss_pred HHHHHHHHHHHHHH--H---HhcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccc
Confidence 77777776543221 1 011222222221 2455666678899999999999888765544443433
No 269
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=90.76 E-value=5.1 Score=30.60 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=54.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHH-hhccHHHHHHhhc--------CCCHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAEGLEKIENLQS--------HDNTEIY 384 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~l~~--------~~~~~v~ 384 (431)
+++.|..-|+.+++.|+.++|.+|..++..+... |...+. ....+..+.+... .++..||
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR 107 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVR 107 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHH
Confidence 5777888888888999999999999999877532 444333 3444555555533 2357899
Q ss_pred HHHHHHHHHhcCCC
Q 014088 385 EKAVKILETYWVEE 398 (431)
Q Consensus 385 ~~a~~~l~~~~~~e 398 (431)
..|..++..+|+++
T Consensus 108 ~~A~El~~~if~~~ 121 (122)
T cd03572 108 EEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999876
No 270
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.76 E-value=7.2 Score=39.61 Aligned_cols=148 Identities=12% Similarity=0.098 Sum_probs=83.5
Q ss_pred chhHHHHHHHHHHHhhcCC-CC---------CChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 115 KLSMLRNATWTLSNFCRGK-PQ---------PLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~-~~---------~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
++.++..|+-+++.+.... .. ........+++.+...+. ..+.+-+..++.+|+|+...
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------- 520 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------- 520 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence 4567777777777665432 11 111222445555555444 56778888999999998632
Q ss_pred HHHhCcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhh
Q 014088 181 VIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNIT 256 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~ 256 (431)
..++.+..++... ...+|..|++++..++...+... .+.++.++.+. .+.++|..|..+|...-
T Consensus 521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~ 588 (618)
T PF01347_consen 521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN 588 (618)
T ss_dssp ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Confidence 3456777777665 56788899999998876555333 35677777554 25678888876665531
Q ss_pred cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHH
Q 014088 257 AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAA 291 (431)
Q Consensus 257 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~ 291 (431)
.+.. .+..+...+..+ +..|..-+.
T Consensus 589 -P~~~---------~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 589 -PSPS---------VLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp ---HH---------HHHHHHHHHTT-S-HHHHHHHH
T ss_pred -CCHH---------HHHHHHHHHhhCchHHHHHHHH
Confidence 1122 344556666544 555554433
No 271
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=21 Score=36.41 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=75.8
Q ss_pred cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHH----HHHH---hcccchhhHHHHHHHHHHHhhc
Q 014088 186 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPC----LLDL---LTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~----L~~l---L~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.++.+++.|..++..+-..|+.++-.+-...+.....+. ...+.+. +.++ ++.+ ...--.....++.++..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHHHHHHHHHH
Confidence 567777777777777888888888776543332111122 1122221 2222 2222 22222333444444433
Q ss_pred CCHHHHHHHHHhCCHHHHHHHH----ccC-CHhHH---HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 014088 258 GNVNQIQAIIEAGIIGPLVNLL----LNA-EFEIK---KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329 (431)
Q Consensus 258 ~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~---~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 329 (431)
-.++........ ++..|.+++ +++ ++..- -+++.++-+.+...++..... .+...++.+...+..+-.+.
T Consensus 578 i~~~~i~p~~~~-~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~-~e~aL~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 578 ILQSAIIPHAPE-LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS-LEEALFPVFQTILSEDIQEF 655 (960)
T ss_pred hCHHhhhhhhhH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 223333222211 233333333 333 33222 334444444444444333333 33445666666776666677
Q ss_pred HHHHHHHHHHHHHhhhh
Q 014088 330 VTVCLEGLENILKAGEA 346 (431)
Q Consensus 330 ~~~al~~L~~l~~~~~~ 346 (431)
.-.++..+..+++....
T Consensus 656 iPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 77888888887776554
No 272
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=90.71 E-value=2.3 Score=31.06 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088 312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391 (431)
Q Consensus 312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 391 (431)
...+..|++-++.+.+.....++..+..+++.... ...+.+.|+.+-+.++....+++.+.....++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a-------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA-------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH-------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44577777777777777888899999998887653 56788899999999998888899988888887
Q ss_pred HH
Q 014088 392 ET 393 (431)
Q Consensus 392 ~~ 393 (431)
+.
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 64
No 273
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.67 E-value=1.5 Score=34.33 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=59.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL 391 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~-~~v~~~a~~~l 391 (431)
++..|..-++++++.++..|+..|..++++++.. |+..+.+..+++.|..+..++ + +.|++++..++
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3555666777899999999999999999997653 778888888999999886543 3 34999999999
Q ss_pred HHhcCCCCCC
Q 014088 392 ETYWVEEDED 401 (431)
Q Consensus 392 ~~~~~~e~~~ 401 (431)
..+...-..+
T Consensus 107 ~~W~~~f~~~ 116 (133)
T smart00288 107 QEWADAFKND 116 (133)
T ss_pred HHHHHHHcCC
Confidence 8876644333
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.38 E-value=1.9 Score=44.20 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
.+.+|..+.-+++++|........ ..+|.+++-|+.. ...+|.+.+-+++.+|..-+ . .-...++.+.
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----a-m~d~YiP~I~ 1012 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----A-MTDRYIPMIA 1012 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----H-HHHHhhHHHH
Confidence 367788899999999975344332 3688899888765 67888888888888876321 1 1223689999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH-HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL-EKIENLQSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
..|..+++-++..++-.|.++++.+-- +..|.+ -+..--+-+.+++++..|.-.+......+
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~~v-----------------Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFGIV-----------------KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhhh-----------------hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999875421 112211 11111144567788887777776655544
Q ss_pred C
Q 014088 399 D 399 (431)
Q Consensus 399 ~ 399 (431)
+
T Consensus 1076 ~ 1076 (1529)
T KOG0413|consen 1076 E 1076 (1529)
T ss_pred C
Confidence 3
No 275
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.38 E-value=9.5 Score=31.83 Aligned_cols=145 Identities=15% Similarity=0.094 Sum_probs=90.3
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
.++.+++.. .+++..++..|+.++..+.+..-... ...+|.++.+..++++.++..|...+..+.+..+.....-
T Consensus 9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677766 67789999999999999988752111 3589999999999999999999999999987665544322
Q ss_pred HHhCcHHHHHHh---cCCCCc-cc---HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-------hhhHHHH
Q 014088 182 IEAGVCPRLVEL---LRHPSP-SV---LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------KKSIKKE 247 (431)
Q Consensus 182 ~~~~~i~~L~~l---l~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------~~~v~~~ 247 (431)
...| +..-..+ +..+.. .. ....+..+..+...+...+. +++..+++.+.... ...-...
T Consensus 84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~-----~Fl~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRR-----KFLKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHH-----HHHHHHHHHHHhhccccccccchhHHHH
Confidence 2222 2322222 222211 11 45556666666665555555 33455666654431 2333455
Q ss_pred HHHHHHHhhc
Q 014088 248 ACWTISNITA 257 (431)
Q Consensus 248 a~~~L~nl~~ 257 (431)
..++.-|++.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 6666666665
No 276
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.26 E-value=32 Score=37.68 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=73.2
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH-
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ- 305 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~- 305 (431)
+++|.|-.-|.+. +..+|..|...+|.+......... =-....+...+.-+.+.+.+||.+++....++..+.....
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999999888 999999999999998874222221 0112345556666667778888888777777665432100
Q ss_pred ----HH-----------------------------HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 306 ----IK-----------------------------FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 306 ----~~-----------------------------~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
.. .+... .+..+.+-+..+...|+..|+..|..+.++
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00 00011 233333344566788999999998888874
No 277
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.25 E-value=7.7 Score=30.58 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=57.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHH---HHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE---IYEKAVK 389 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~---v~~~a~~ 389 (431)
++..|..-++++++.++..|+..|..++++++.. |+..+....+++.+..+. .+.... |++++..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 4566667777899999999999999999988653 677777788899999874 344444 8999999
Q ss_pred HHHHhcCC
Q 014088 390 ILETYWVE 397 (431)
Q Consensus 390 ~l~~~~~~ 397 (431)
++..|-..
T Consensus 112 ll~~W~~~ 119 (140)
T PF00790_consen 112 LLQEWAEA 119 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876443
No 278
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.17 E-value=1.6 Score=36.83 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=77.8
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
-+|.++-|++...=.++...-+|..++.+++.+.. ++......+....++|..+++++.+++.-+..++.++..+..++
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 34545444444343344455788999999999987 55677788888999999999999999888889999999888766
Q ss_pred hHHHHHHH-------HcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 91 PKCRDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 91 ~~~~~~i~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
...+.... -...+..++..+.+.....+...+.++...++..
T Consensus 221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 43321111 1112222333333344455556666666655554
No 279
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.73 E-value=1.8 Score=34.32 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=62.9
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~ 343 (431)
++..|..-+.++++.++..|+..|-.+..+++......+.+..++..|..++.. .++.++..++..+......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999999998888888888999999999987 6889999999888877643
No 280
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=34 Score=38.57 Aligned_cols=222 Identities=14% Similarity=0.052 Sum_probs=120.6
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
..+|..+..+..+++.++...++ ..++ +...+..++-+.+ .++..|..-..+++.+-+.....-..-.....+..+
T Consensus 887 ~~~p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~il 963 (2067)
T KOG1822|consen 887 NPNPKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSIL 963 (2067)
T ss_pred cCChHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHH
Confidence 45667777777777776652111 1111 1334555555555 555555555556666543221111111112235556
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC---ChHHHHHHHHHHH------Hhc------
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALS------YLS------ 171 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~------~l~------ 171 (431)
..+-.++.++.++.-++.++..+...............+..+..++-+. ..++...--+++. .+.
T Consensus 964 lal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen 964 LALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE 1043 (2067)
T ss_pred HHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc
Confidence 6666556667999999999999888763333445566666666666533 2333332222222 121
Q ss_pred -cCChH--HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088 172 -DGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 248 (431)
Q Consensus 172 -~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 248 (431)
..+.. ... -+....+-...-++.++++.+...++.++.++-...+.... -.-++..+..++... ..-.|...
T Consensus 1044 L~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~-~~i~r~~~ 1118 (2067)
T KOG1822|consen 1044 LGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS-YLILRRAS 1118 (2067)
T ss_pred cCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch-hhhhhhhH
Confidence 11111 111 12222233333445677888999999999988766553211 124567788888777 56667777
Q ss_pred HHHHHHhhc
Q 014088 249 CWTISNITA 257 (431)
Q Consensus 249 ~~~L~nl~~ 257 (431)
...+..+..
T Consensus 1119 ~~clrql~~ 1127 (2067)
T KOG1822|consen 1119 FSCLRQLVQ 1127 (2067)
T ss_pred HhhhhHHhH
Confidence 777777765
No 281
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=88.86 E-value=12 Score=34.18 Aligned_cols=176 Identities=11% Similarity=0.076 Sum_probs=100.3
Q ss_pred CcccHHHHHHHHhHhhcCChhhhHHHhhc-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHhhcCCH
Q 014088 198 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
...+|..|+.++..+...++..+..+++. .....|+..|- +. ++.-...|+.++..+...++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 45788999999999999888766655521 11223555444 22 44445678889999998888
Q ss_pred HHHHHHHHh------------CCHHHHHHHHcc-----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhc
Q 014088 261 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLL 322 (431)
Q Consensus 261 ~~~~~l~~~------------~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll 322 (431)
+.+..+..- -.++.+..+|.. .+++++..-+..|+..+..+ +.....|+.. ..++.|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~-p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC-PDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC-HHHHHHHHcCcchHHHHHHHh
Confidence 876665421 136666666644 26777777777777777654 4666666665 4688888875
Q ss_pred C---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHH-hhc---cHHHHHHhhcCC
Q 014088 323 N---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAE---GLEKIENLQSHD 379 (431)
Q Consensus 323 ~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~~l~~l~~~~ 379 (431)
. ..+.-++-.+.-.|+-..+...+..+ .....+...|. +.| .+.+|.++.+++
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~----~~R~~l~~ll~~riG~d~y~~kl~~lr~~~ 268 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSP----IPRATLHPLLTKRIGRDNYFSKLEQLRKSP 268 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-SCC----C-HHHHHHHHHHHT-HHHHHHHHHCCCCST
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCCCCC----cCHHHHHHHHHHhcCHHHHHHHHHHHhcCh
Confidence 3 23455555555666666665543322 11223455553 333 455555554444
No 282
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.82 E-value=7.7 Score=30.27 Aligned_cols=75 Identities=8% Similarity=-0.025 Sum_probs=62.2
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~ 345 (431)
++..|..-+.++++.++..|+..|-.+..++++.....+....++..|..++.. .++.++..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677788889999999999999999999987777777777888889998875 477899999999988876543
No 283
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=88.75 E-value=14 Score=33.81 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=104.2
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc----c----chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCH
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----N----YKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 272 (431)
++...++.+..+....+... .+....++.+++.+-. . .++++..-....+..+-....+....+.+. ++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HH
Confidence 56667777777766544222 2334667777664321 1 134444444444444433223334445443 67
Q ss_pred HHHHHHHccC---CHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 273 GPLVNLLLNA---EFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 273 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
...+.++..+ -|+.|..-...|..+....- +++.+ .+++.+.-.+++.+.++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7788888764 57888887777777765431 12222 246666677788999999999999999998
Q ss_pred hhhhhhhcCCCCCcchHHHHHHhhccHHHHHH----hhcCCCHHHHHHHHHHHHHhcC
Q 014088 343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~----l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
....... .+...+-+...++.+.. +..+.+....+.-..+|..+|.
T Consensus 195 ~~~~~~~--------~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKTNP--------EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-SH--------HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 7776111 13444444444444444 3455555556666677887774
No 284
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.67 E-value=15 Score=35.20 Aligned_cols=239 Identities=10% Similarity=0.102 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcC----CChHHHHHHHHcCCh
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGAL 103 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~~~~i 103 (431)
+++-+.....+++.-+-..-.+....+++ ..+..+....++ .++..-+....+++.+.+ .+++. -.-++...+
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~-v~~~E~~L~ 119 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEA-VSQFEEALF 119 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhH-HHHHHHHHH
Confidence 44334444444433333332333333332 234444444455 457666666666666643 22221 112344467
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
+.+...| +..-.+..-++..+|+.|.+..+ .........++|.++.- +-.....+ -...+.|.......+...
T Consensus 120 P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 120 PPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---
Confidence 7777778 44446778888888888887665 22222334555544422 22111111 223333333332222221
Q ss_pred HHhC----cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh-hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088 182 IEAG----VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256 (431)
Q Consensus 182 ~~~~----~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 256 (431)
...+ ++..+-+++.+.. .-..+...|..+...-+.. .+..+. .++..++.-|++...++..+..+..++.++
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~ 271 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFA 271 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 1112 2222333444433 2245667777776544421 121111 344555555555545666666666666655
Q ss_pred c-CCHHHHHHHHH---hCCHHHHHH
Q 014088 257 A-GNVNQIQAIIE---AGIIGPLVN 277 (431)
Q Consensus 257 ~-~~~~~~~~l~~---~~~i~~L~~ 277 (431)
. .+++.....++ .|+...++.
T Consensus 272 ~~~g~~~li~~id~IQ~glF~~il~ 296 (435)
T PF03378_consen 272 IKYGPDFLIQTIDSIQPGLFGMILE 296 (435)
T ss_dssp HHH-HHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcCHHHHHHHHHHhcCCcHHHHHH
Confidence 4 33444444433 344444443
No 285
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.65 E-value=29 Score=34.94 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=79.2
Q ss_pred hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC----CCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhc
Q 014088 103 LMPLLAQFNE---HAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLS 171 (431)
Q Consensus 103 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~ 171 (431)
+..+..++.. ..++.++..|.-+++.+.... +.........+++.+...|. ..+.+.+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 4455556532 234566677777777666422 11112223456666665554 456667788899999886
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcC-C--CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHH
Q 014088 172 DGTNDKIQAVIEAGVCPRLVELLR-H--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKE 247 (431)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~ 247 (431)
... .+..+..++. . .+..+|..|+++|..++...+... -+.+++++.+. .+.++|..
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence 532 2233444443 2 345688999999998876444332 35566666543 36788888
Q ss_pred HHHHHHHh
Q 014088 248 ACWTISNI 255 (431)
Q Consensus 248 a~~~L~nl 255 (431)
|+..|...
T Consensus 536 A~~~lm~t 543 (574)
T smart00638 536 AVLVLMET 543 (574)
T ss_pred HHHHHHhc
Confidence 87666544
No 286
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.35 E-value=5 Score=35.75 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC--Ch
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL 103 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i 103 (431)
+-+.-++-.++-++. .+.....+...+ +...+..++. +..+..+.-++++++|+...... +..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence 445555555555554 344444444332 2444444443 25688889999999999876654 45544422 23
Q ss_pred HHHHHHhcccc---chhHHHHHHHHHHHhhcCC-CCC-ChhhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChH
Q 014088 104 MPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 104 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
...+..+..+. +..++..++.++.|++... ... .......++..+.+.+. ..+++....++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33333332332 7888889999999998643 111 22223346667777433 25899999999999999976654
Q ss_pred HHH
Q 014088 177 KIQ 179 (431)
Q Consensus 177 ~~~ 179 (431)
...
T Consensus 236 ~~~ 238 (268)
T PF08324_consen 236 AKQ 238 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 287
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.26 E-value=3.4 Score=39.29 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=66.0
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH----HHHHHHhcC
Q 014088 227 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA----AWAISNATS 299 (431)
Q Consensus 227 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a----~~aL~~l~~ 299 (431)
.+-..|..+|.... ++.+|...+.+|.-|--.+. +.-..++..+..++..++...|.-+ ...|.|+-.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 34455666665432 57888888888776643211 1122356678888888877776544 444444433
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088 300 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 300 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 347 (431)
.+..+.. ...+-..+++++...++.-...++..++-+.+..-+.
T Consensus 91 ~~kn~kl----nkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~ 134 (616)
T KOG2229|consen 91 KHKNDKL----NKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN 134 (616)
T ss_pred hcccchH----HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc
Confidence 2211111 1122345677888777766677788888777765543
No 288
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.20 E-value=17 Score=32.23 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHcCCC-------hHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhc
Q 014088 19 QFFFHCFFSCCFGAVQFEAAWALTNIASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVA 87 (431)
Q Consensus 19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~ 87 (431)
+.+++-|.++.. ...++..|..++... .+.|-.+.=.+.+|.++.-+.++. ......++..|..+|
T Consensus 67 ~Ll~KGL~Ss~t---~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 67 PLLLKGLRSSST---YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHhCccCCCCc---HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 344456665544 455555666555421 112322222346677777776655 234455667777777
Q ss_pred CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088 88 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 166 (431)
Q Consensus 88 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 166 (431)
.... ...+..++....+..-.+.......++..++... |. .....+..++.+|.++-+-++..++.+
T Consensus 144 ~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 144 EAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD----HEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4321 1234444444433222222222333333333321 11 223567778899998889999999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088 167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213 (431)
Q Consensus 167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 213 (431)
|..+....+-... ...+++..+.++++.+- -..|+.++-...
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 9988866543322 44467888888887764 445555555444
No 289
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.14 E-value=8.4 Score=29.45 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=57.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCC---
Q 014088 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPD--- 326 (431)
Q Consensus 251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~--- 326 (431)
=|.+++..++.....+ +..|.+-|++.++.|+..++.+|..++..+.+.....+.. ...|..+.++-..+|
T Consensus 24 Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 3455555555544444 4568888888899999999999999999988766666554 334555555544332
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 014088 327 -----PRIVTVCLEGLENILK 342 (431)
Q Consensus 327 -----~~v~~~al~~L~~l~~ 342 (431)
..|+..|-+++.-++.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 2466666666665543
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.84 E-value=4.2 Score=32.15 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=62.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 133 (431)
.++..|.+-|+++++.++..|+..|-.+.... ..+...+...+++..+.+++....++.++..++.++..-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 46788888889999999999999999988763 5577788888899999999966778899999999888877653
No 291
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=87.73 E-value=58 Score=37.38 Aligned_cols=202 Identities=12% Similarity=0.112 Sum_probs=110.0
Q ss_pred ccchhHHHHHHHHHHHhhcCC-CCC---ChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088 113 HAKLSMLRNATWTLSNFCRGK-PQP---LFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 187 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~-~~~---~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 187 (431)
+++..+...|+..|..++... +.. .......++..+..++. +.+.+++..++.|+.++.......+ +. +-
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI----kS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV----KS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh----hc-Cc
Confidence 345677788888888877643 211 12223466777777666 4578999999999999876544332 22 33
Q ss_pred HHHHHhc----CCCCcccHHHHHHHHhHhhcCChhhh-----HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088 188 PRLVELL----RHPSPSVLIPALRTVGNIVTGDDMQT-----QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA- 257 (431)
Q Consensus 188 ~~L~~ll----~~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~- 257 (431)
+.+..++ ....+.+...+..++..++...-... ..+. .++..+.+......+.++-..|+..|.+++.
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 4444444 34567788888888877664211100 1111 3455555555444334455555555554421
Q ss_pred ---CCH-----------------------HHHHH-----HHHhCCHHHHH---HHHccCCHhHHHHHHHHHHHhcCCC--
Q 014088 258 ---GNV-----------------------NQIQA-----IIEAGIIGPLV---NLLLNAEFEIKKEAAWAISNATSGG-- 301 (431)
Q Consensus 258 ---~~~-----------------------~~~~~-----l~~~~~i~~L~---~ll~~~~~~v~~~a~~aL~~l~~~~-- 301 (431)
+.. +.... ......+|.|. ++..+...+||..|+.+|-.+....
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 000 00000 00112233333 3456678999999999998887533
Q ss_pred --CHHHHHHHHHCCChHHHHhhc
Q 014088 302 --SNEQIKFLVSQGCIKPLCDLL 322 (431)
Q Consensus 302 --~~~~~~~l~~~~~l~~L~~ll 322 (431)
+++....+.. +++-++++-+
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHH
Confidence 2334444333 4566665544
No 292
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.63 E-value=33 Score=34.48 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=94.7
Q ss_pred hhHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCCcccHHHHHHHHh
Q 014088 143 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG 210 (431)
Q Consensus 143 ~~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~l~ 210 (431)
..+..+..++.++ .+.++..++.+++.+.. +.+.... .+...+++.+...| ...+...+...+++|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4566667777643 55677788888877663 2211101 11123455555544 3345556777899999
Q ss_pred HhhcCChhhhHHHhhcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhH
Q 014088 211 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI 286 (431)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v 286 (431)
|+.... .++.+...+. ......+|..|+|+|.+++...++.. -+.+++++.+. ++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence 986522 2334444443 22257899999999999986545433 34566666654 7889
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHH
Q 014088 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLE 335 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~ 335 (431)
|..|+.+|... +.+... +..+...+. .++.++...+..
T Consensus 533 RiaA~~~lm~t--~P~~~~---------l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 533 RMAAVLVLMET--KPSVAL---------LQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHHHHHHhc--CCCHHH---------HHHHHHHHhhcCcHHHHHHhHH
Confidence 98888777654 233233 444444554 445666655443
No 293
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.13 E-value=7 Score=35.12 Aligned_cols=131 Identities=10% Similarity=0.093 Sum_probs=70.8
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhH-HHHHhCCChHHHHHhh----C--------CCCHHHHHHHHHHHHHhcCC--
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVRLL----S--------SPTDDVREQAVWALGNVAGD-- 89 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~lL----~--------~~~~~v~~~a~~~L~~l~~~-- 89 (431)
|.++.++.++..++.+|..+....+... ..+.+.|..+.+-..+ . ..+..+...+.-++..++.-
T Consensus 127 llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~ 206 (282)
T PF10521_consen 127 LLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQE 206 (282)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 3445578999999999999987443332 3466677665544433 2 24456677777777777421
Q ss_pred --ChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC
Q 014088 90 --SPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 155 (431)
Q Consensus 90 --~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~ 155 (431)
....+......-.-+.++.-+.... .+.++...+..+..+...-........+.+++.+.+.+.++
T Consensus 207 ~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 207 NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 1111111111111111333332222 36666666666666665533333344566777777766654
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.84 E-value=6.3 Score=35.41 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=47.1
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC--hhhHhhhHH----HHHHhhc--------CCChHHHHHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALP----ALERLIH--------SNDDEVLTDACWAL 167 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~i~----~L~~lL~--------~~~~~v~~~a~~~L 167 (431)
.+++++.++ ++.+++++..++.+|..+....+... .....|..+ .+..++. .....+...+..++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 588899999 77799999999999999998764444 122233333 3444444 33456777777777
Q ss_pred HHhc
Q 014088 168 SYLS 171 (431)
Q Consensus 168 ~~l~ 171 (431)
..+.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 295
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.67 E-value=2.4 Score=36.33 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChH-HHHHHHHcCC
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHG-------AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDLVLSNGA 102 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~ 102 (431)
.-|..|+.+|++++- .+.+-+.+...+ ++..|..++.. .++..|+.|+-.|.+++..... .|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 568999999999986 344444444433 44556666655 7899999999999999976654 4566777889
Q ss_pred hHHHHHHhc
Q 014088 103 LMPLLAQFN 111 (431)
Q Consensus 103 i~~l~~~l~ 111 (431)
+..|+..+.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
No 296
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=86.49 E-value=10 Score=37.23 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=101.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-----------CCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----------SNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
+++.++...|-..|..+... .....++..|..+.. ..++.++..++..|..-.... -
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence 34566666677677666554 122456666666554 236677777777775421110 0
Q ss_pred HHhCcHHHHHHhcCCC--CcccHHHHHHHH---hHhhcCChhhhH----HHhhcCChHHHHH----HhcccchhhHHHHH
Q 014088 182 IEAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQ----CIINHQALPCLLD----LLTQNYKKSIKKEA 248 (431)
Q Consensus 182 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~~~~~----~~~~~~~l~~L~~----lL~~~~~~~v~~~a 248 (431)
.....++.+..-+.+. +..++..++..+ ...........- ..+..++.+.+-. --... +...|..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHH
Confidence 0112334444445554 566777777777 544443332222 2233344444410 01123 67899999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
..+||.++...+.... -+-+++..|.+-|..+.++++...-.+|..++..
T Consensus 395 Ye~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999999987665431 1245688899888888999999888888888653
No 297
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.39 E-value=3.9 Score=32.17 Aligned_cols=73 Identities=10% Similarity=-0.001 Sum_probs=61.4
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 343 (431)
.+..+..-+.++++.++..|+..|-.+..++++.....+.+.+++..|+.++.. .+..++..++..+......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999988888888888999999998853 4678999999888877654
No 298
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=86.03 E-value=9.8 Score=40.64 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=129.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-HHHHHHcCChHHHHHHh---------ccccchhHHHHHHHHHHH
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQF---------NEHAKLSMLRNATWTLSN 128 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~ 128 (431)
+.++.|+..+-++.+++|+.+..++..+....... -....+. .+..++..+ ..+--..+++.++|+|..
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 45677777777899999999998888887432110 0011111 111111111 011234788999999999
Q ss_pred hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088 129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 208 (431)
Q Consensus 129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 208 (431)
+..+- ........+..+.+++..++.+++...+..+.+......+....+. ..+++..+..|.+.+..++..|...
T Consensus 156 ~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 156 YLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHHHH
Confidence 88773 2233456677778888877777777666666543322112222111 1456667777888888899888888
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH----HHHHhhcCCHHHHHHH----HHhCCHHHHHHHHc
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW----TISNITAGNVNQIQAI----IEAGIIGPLVNLLL 280 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~----~L~nl~~~~~~~~~~l----~~~~~i~~L~~ll~ 280 (431)
+.-...........-+ ..++..+...+..- +. ...+.. .+..++... +..... .+.|++|.+...+.
T Consensus 232 l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~l-dd--l~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 232 LVPAPSIQVKLMVQKI-AKLVHTLWSFLLEL-DD--LSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred hhhhhHHHHhhhHhHH-HHHHHHHHHHHHHh-hh--cchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHH
Confidence 7766543211111000 12233333333222 11 111111 222333321 111111 13578999999998
Q ss_pred cCCHhHHHHHHHHHHHhcCCC
Q 014088 281 NAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 281 ~~~~~v~~~a~~aL~~l~~~~ 301 (431)
+.-..++..++..+..+.+..
T Consensus 307 ~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887788899999998887754
No 299
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.00 E-value=1.6 Score=38.87 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHh-C--cHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhh-HHHhhcC
Q 014088 155 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-G--VCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQT-QCIINHQ 227 (431)
Q Consensus 155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~--~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~ 227 (431)
..+..+.-+++++.|+..+...... +... + ++..+....... +..++..+...+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4677888999999999987665533 3322 2 222222222332 67788889999999875321111 0001112
Q ss_pred ChHHHHH-HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-cCCHhHHHHH
Q 014088 228 ALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA 290 (431)
Q Consensus 228 ~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a 290 (431)
.+..+.+ +.....+++....++-++|++....+.........++-..+-..-. ..+++++..+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 4556666 3334347899999999999999765544433322333333322222 2345555443
No 300
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.65 E-value=51 Score=34.65 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=74.1
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 19 QFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
|.|++-|..++...+|.+.+.+++.+|.+.. ..-...+|.+..-|.++++-+|++++-.|.+|.... .+.
T Consensus 971 P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vK 1040 (1529)
T KOG0413|consen 971 PMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG-----IVK 1040 (1529)
T ss_pred HHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----hhh
Confidence 3444578878878888888888888886321 122357899999999999999999999999997432 222
Q ss_pred HcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088 99 SNG--ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 99 ~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 133 (431)
-.| +++.++.++ +.+++++..|=.+++.+....
T Consensus 1041 w~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1041 WNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred cchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc
Confidence 223 234444444 557889999999999988764
No 301
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.58 E-value=5.4 Score=30.14 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=52.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-----h-cCCCHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA 387 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~a 387 (431)
++..|..-+..+++.+...++..|..+++++... |...+.+..++..+..+ . ...+..|++++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~ 106 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA 106 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence 4556666667789999999999999999988754 56666666655555332 1 34589999999
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
..+++.+.+
T Consensus 107 ~~l~~~w~~ 115 (115)
T cd00197 107 IELVQLWAS 115 (115)
T ss_pred HHHHHHHhC
Confidence 999987653
No 302
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=33 Score=37.37 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc------cccchhHHHHHHHHHHHhhcCC-CCCChhhHh
Q 014088 70 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTR 142 (431)
Q Consensus 70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~ 142 (431)
.+..+++...+.++.++.....+ .+.. | .+.+.+++. .....++.+.+..+|.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 35567777777888887654322 1111 1 444444442 1124567778888888888877 666666677
Q ss_pred hhHHHHHHhhcCC-ChHHHHHHHHHHHHh
Q 014088 143 PALPALERLIHSN-DDEVLTDACWALSYL 170 (431)
Q Consensus 143 ~~i~~L~~lL~~~-~~~v~~~a~~~L~~l 170 (431)
+++..+..+-+.. |..+--.|+..+.++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 7888777766533 444444444444433
No 303
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.80 E-value=42 Score=33.04 Aligned_cols=220 Identities=16% Similarity=0.066 Sum_probs=118.4
Q ss_pred CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--C---------CCcccHHHHHHHHhHhhcCChhhhHH
Q 014088 154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--H---------PSPSVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 154 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
+++.+|...+-..|..+...-+ +..++..|+.+.. . -++.++...+..| +.... ..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~---Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVI---AA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHH---HH
Confidence 3455666667666766654421 1234555655544 1 2334444444444 33211 11
Q ss_pred HhhcCChHHHHHHhccc-chhhHHHHHHHHH---HHhhcC-CHHHHH---HHHHhCCHHHHHH----HHccCCHhHHHHH
Q 014088 223 IINHQALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQIQ---AIIEAGIIGPLVN----LLLNAEFEIKKEA 290 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~~---~l~~~~~i~~L~~----ll~~~~~~v~~~a 290 (431)
..-...+..+..-+.+. .+.++|..++..+ .....+ .+.... ..+..++.|.+-. -....+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 11112333333333332 1456676776666 555442 233333 3334455554410 0112367899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHH
Q 014088 291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 370 (431)
Q Consensus 291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (431)
..+|+.++.....-.. .+.+.+..|++-+..+.++++...-++|..++..-..... ...........
T Consensus 395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~----------~~~~~~~~~~~ 461 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD----------DEDEQKRLLLE 461 (501)
T ss_pred HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc----------chhHHHHHHHH
Confidence 9999999986632110 2345788898888888899998888888888765543221 00000011111
Q ss_pred -HHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088 371 -KIENLQSHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 371 -~l~~l~~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
.+.....+....+|..|.+-.+++|+.++
T Consensus 462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 462 LLLLSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence 12223446667788889999999998765
No 304
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.51 E-value=36 Score=32.01 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCC---ChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 014088 115 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 189 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 189 (431)
+.++..+|+.+|+.+..+..-. .......++...+..+.++ +..+....+++|..---... ++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence 6788899999999998775211 1112233566666666543 56778888888864322211 222333444
Q ss_pred HHHhc----C-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C-CHH
Q 014088 190 LVELL----R-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN 261 (431)
Q Consensus 190 L~~ll----~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~ 261 (431)
++..+ + -++..+....+.++.++....+.....-.+ ..++.++..+-+. ...+|..|...+..+.. + +..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 44433 2 256678888999999998766644332222 3677777777777 67777776655554442 2 222
Q ss_pred HHHHHH---H----hC-----CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 014088 262 QIQAII---E----AG-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR 328 (431)
Q Consensus 262 ~~~~l~---~----~~-----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~ 328 (431)
....+. + .+ +.+.|..++..++......-+|...-+..... -+....+ +..+.....++++.++.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence 222221 1 12 23335666666332222222333322222221 1222221 22466666788899999
Q ss_pred HHHHHHHHHHHHHH
Q 014088 329 IVTVCLEGLENILK 342 (431)
Q Consensus 329 v~~~al~~L~~l~~ 342 (431)
++..|..+=..++.
T Consensus 290 ~k~~A~~aW~~liy 303 (372)
T PF12231_consen 290 VKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777766
No 305
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.50 E-value=29 Score=37.98 Aligned_cols=147 Identities=12% Similarity=0.015 Sum_probs=91.8
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
++++.|..-| .+.+..+|..|...++.+..............++...+.-+.+.+.++|..++....+...+.+.....
T Consensus 259 ~vip~l~~eL-~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFEL-LSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 4566777777 677899999999999999887533333334667777788888889999999999988876665543331
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
. +....+- ....++.++....-++..+... . ....++.. .+..+.+.+.+. ...||..|+..|..+-.
T Consensus 338 ~---~~~~~l~--~~~~D~~~rir~~v~i~~~~v~-~-~~l~~~~~-ll~~~~eR~rDK-k~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 S---TILLALR--ERDLDEDVRVRTQVVIVACDVM-K-FKLVYIPL-LLKLVAERLRDK-KIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred H---HHHHHHH--hhcCChhhhheeeEEEEEeehh-H-hhhhhhHH-HHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 1 1222222 2334444444433322222110 1 11112222 666777777777 89999999988886643
No 306
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.51 E-value=3.8 Score=35.12 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=61.4
Q ss_pred ccHHHHHHHHhHhhcCChhhhHHHhhc-------CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH-HHhCC
Q 014088 200 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI 271 (431)
Q Consensus 200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~ 271 (431)
+-++.++.++..++.... +...++.. .++..|.+++....+...|+.|+-.|.+++.++......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 467889999999986533 22323221 4566777777777688999999999999999866666444 35778
Q ss_pred HHHHHHHHccCCH
Q 014088 272 IGPLVNLLLNAEF 284 (431)
Q Consensus 272 i~~L~~ll~~~~~ 284 (431)
+..|+.+++..+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 307
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.38 E-value=9 Score=29.91 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=59.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcCChHHHHHHhccccchh-HHHHHHHHHHHhhcCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK 133 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~-~~~~a~~~L~~l~~~~ 133 (431)
.++..|.+-|+++++.++..|+..|-.+... .+.+...+....++..|..++....+.. ++..++.++..-+...
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3677888888999999999999999999876 3557778888888999998886555444 8888888887776643
No 308
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.83 E-value=60 Score=33.28 Aligned_cols=298 Identities=15% Similarity=0.076 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHcCCC--hHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCChH
Q 014088 31 GAVQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSP---KCRDLVLSNGALM 104 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~ 104 (431)
.-+|+..+|.++...+.. .+.+.. +=..++.+|++. +..++..+++++.-...+-. +.-..+. .....
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l-----~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~ 574 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPL-----LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFV 574 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHH-----HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHH
Confidence 357788899998877511 222222 235678888875 67778888888877664321 1111111 22334
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
.+.+++..-...+.+-..+..++.+...-..........++..+-.+=+ .+.+-++...+.++.|+...-..... ..
T Consensus 575 ~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~-~~ 653 (978)
T KOG1993|consen 575 LLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF-EF 653 (978)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-cc
Confidence 4555554445566777788888777655311111122222222222222 23556777788888888754221111 11
Q ss_pred HhCcHHHHHHhcCC-CCcc---cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088 183 EAGVCPRLVELLRH-PSPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA- 257 (431)
Q Consensus 183 ~~~~i~~L~~ll~~-~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~- 257 (431)
. .++-.++++-.+ ++|+ ..+-+...........+.....+. +++|.+..++... .+. ...+...+..-.-
T Consensus 654 ~-~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~-L~t~l~Ii~sYilL 728 (978)
T KOG1993|consen 654 Y-PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TEN-LPTVLMIISSYILL 728 (978)
T ss_pred h-HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hhh-HHHHHHHHHHHHhh
Confidence 1 222233333222 2222 223333333333332232222222 4567777777655 332 3334444443332
Q ss_pred CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc--CCCCHHHHHHHHH
Q 014088 258 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NCPDPRIVTVCLE 335 (431)
Q Consensus 258 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~al~ 335 (431)
.++... .....|+.+.+.+++.+-..+-....+.++..+.... +....+...++++.+..-+ +.+.|.+.-.-+.
T Consensus 729 d~~~fl-~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~--~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~ 805 (978)
T KOG1993|consen 729 DNTVFL-NDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTN--PILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLL 805 (978)
T ss_pred ccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh--HHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHH
Confidence 333322 2223567888888887655555566666666666543 3455555667777766644 3445566555566
Q ss_pred HHHHHHHh
Q 014088 336 GLENILKA 343 (431)
Q Consensus 336 ~L~~l~~~ 343 (431)
+++++.-.
T Consensus 806 vvaRi~l~ 813 (978)
T KOG1993|consen 806 VVARISLR 813 (978)
T ss_pred HHHHHHhc
Confidence 65555443
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.55 E-value=26 Score=28.93 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
..++.+.+-|... +...+--|...+..+... ..+.+-.++.. ++..+...|++.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5678888888877 677777777777777654 44544444443 77888888999999999999999999954
No 310
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=82.26 E-value=25 Score=31.80 Aligned_cols=126 Identities=12% Similarity=0.208 Sum_probs=88.5
Q ss_pred HHhhcCChHHHHHHhcc----------------------cchhhHHHHHHHHHHHhhcCCHHHHHH--------------
Q 014088 222 CIINHQALPCLLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQA-------------- 265 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------- 265 (431)
.+.+.|++|.|-++++. .++..+|.+-++.+.+++.........
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45566777777776631 002357888888888888732111100
Q ss_pred -------HHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHH
Q 014088 266 -------IIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTV 332 (431)
Q Consensus 266 -------l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~ 332 (431)
--+.|.+..+++.+... +...|..-+.++-.+.+..++ .....+.+.|+++.++..+-++ +.++.+.
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 01356788888888654 677888999999999998876 4555777899999998876533 3468889
Q ss_pred HHHHHHHHHHhhhhh
Q 014088 333 CLEGLENILKAGEAE 347 (431)
Q Consensus 333 al~~L~~l~~~~~~~ 347 (431)
....|+-+++.....
T Consensus 164 ~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 164 NFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHCCCHHH
Confidence 999999999987654
No 311
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=82.16 E-value=13 Score=36.07 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred cCChHHHHHHhcccchhhHHHHHHHHHHHhh--cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCC-
Q 014088 226 HQALPCLLDLLTQNYKKSIKKEACWTISNIT--AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG- 301 (431)
Q Consensus 226 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~--~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~- 301 (431)
.++++.+++.+..+ .+-.-.++.++ .= .......+-+.+.++++.|+++|... +..++.+|+.+|+.+....
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 35566666666544 22222222222 10 12234455566789999999999744 7889999998888875432
Q ss_pred -----------CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhh
Q 014088 302 -----------SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 302 -----------~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~ 345 (431)
.......+.+...+..|++.+= .........++.++..+++...
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 1345566777778888887553 2335556677888888876553
No 312
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.04 E-value=8.5 Score=35.67 Aligned_cols=209 Identities=16% Similarity=0.060 Sum_probs=106.4
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC--CChHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG--DSPKCRDLV 97 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i 97 (431)
.+..++.+..++......+.++..-+..- ..-+...++..+.+.+++..+.+|+.-+..++.... .+......+
T Consensus 26 ~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~ 101 (339)
T PF12074_consen 26 GLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA 101 (339)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH
Confidence 34446665566666666666666544311 111223466777788888777799988888888764 111111222
Q ss_pred HHcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-CCCCh--hhHh----hhHHH-H--HHhhcC-CChHHH
Q 014088 98 LSNGALMPLLAQFNE---HAKLSML---RNATWTLSNFCRGK-PQPLF--EQTR----PALPA-L--ERLIHS-NDDEVL 160 (431)
Q Consensus 98 ~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~--~~~~----~~i~~-L--~~lL~~-~~~~v~ 160 (431)
...++.++..+.. ++-+... ..++.++..+.... ..... .... +-=|. + -+++.. .+++-.
T Consensus 102 --~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~ 179 (339)
T PF12074_consen 102 --EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDL 179 (339)
T ss_pred --HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHH
Confidence 2356667766632 2211111 11222222211111 00000 0000 00000 0 022233 456667
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
...++++..+..+.......-.....-+.++.++-+. .+.+|..|+.++..+...++.. +...++..+-+.+..
T Consensus 180 ~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 180 CWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHh
Confidence 7777788777655433221111223456778888776 7899999999999998776643 222345555555543
No 313
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.57 E-value=23 Score=32.75 Aligned_cols=73 Identities=8% Similarity=0.066 Sum_probs=61.4
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~ 343 (431)
++..+.+-|.+.++.|...|+..+..+..++....+..+.+.++...|..++. ..++.+.+..-..+......
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999999999999998888888888899999999988 66788887766666666553
No 314
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.53 E-value=4.6 Score=37.09 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=65.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE 392 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~ 392 (431)
++..|..-+...++.|...|+..+..+..++++. |+.-+...++...+..+.. +..+.|+++...++.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 5777777888899999999999999999988764 7888888999999999977 788999999999888
Q ss_pred HhcCCCCCCCCC
Q 014088 393 TYWVEEDEDEPL 404 (431)
Q Consensus 393 ~~~~~e~~~~~~ 404 (431)
.|-++-.+|-.+
T Consensus 115 eWsee~K~Dp~l 126 (462)
T KOG2199|consen 115 EWSEEFKKDPSL 126 (462)
T ss_pred HHHHHhccCcch
Confidence 877733444443
No 315
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=81.45 E-value=54 Score=31.76 Aligned_cols=241 Identities=17% Similarity=0.168 Sum_probs=128.3
Q ss_pred hhhHHHHHHhhc-CCChHHHHHHHHHHHHhc--c---C-----ChHHHHHHHHhCcHHHHHHhcCC----CCcccHHHHH
Q 014088 142 RPALPALERLIH-SNDDEVLTDACWALSYLS--D---G-----TNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPAL 206 (431)
Q Consensus 142 ~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~--~---~-----~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~ 206 (431)
..++..+.+++. ++...++.+++|.|+.+= . + -|.....+-+..++...+.++-. +.+.+....+
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 456666777766 457788999999998652 1 1 11222334445666666666522 2223322222
Q ss_pred H-HHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088 207 R-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 285 (431)
Q Consensus 207 ~-~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 285 (431)
+ ++..++...+... +--.+.-..|..+++-...++++..++.....=+.. ......++..=+.|.++.-+ +..
T Consensus 176 kvvl~~ia~vgeS~q--yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sL---s~~ 249 (589)
T PF11229_consen 176 KVVLKPIATVGESYQ--YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSL---SVN 249 (589)
T ss_pred HHHHHHhhhcCCCCC--CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhh---hHH
Confidence 2 2222222111110 000112222333443333677888777554443333 33344555554555555433 456
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHh
Q 014088 286 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 365 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 365 (431)
.+..-+..+..+..+-.+++.+.|.+.-.+..+...-...++++...++..|..-++....... ....+.+
T Consensus 250 tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h---------~Ws~Lc~ 320 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQH---------CWSLLCE 320 (589)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhH---------HHHHHHH
Confidence 6777777777777777778878776644444433333345678888888888887776654332 2344433
Q ss_pred hccHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCCC
Q 014088 366 AEGLEKIENLQ----SHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 366 ~~~~~~l~~l~----~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
..++|.+++ ....-+++....+.|..+-++|.
T Consensus 321 --ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~ei 356 (589)
T PF11229_consen 321 --TTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEI 356 (589)
T ss_pred --HHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHH
Confidence 356666664 22334555555666666666553
No 316
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.63 E-value=31 Score=28.51 Aligned_cols=81 Identities=10% Similarity=0.075 Sum_probs=56.6
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 263 (431)
..++.+++=|+..+...+-.|...+..+... .....-.++ ..++..+...|.+. ++++...++.+|..|+..++..-
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567777777777777787787777777665 333333233 36777888888888 99999999999999966544433
Q ss_pred HHHH
Q 014088 264 QAII 267 (431)
Q Consensus 264 ~~l~ 267 (431)
..++
T Consensus 116 ~aLv 119 (183)
T PF10274_consen 116 EALV 119 (183)
T ss_pred HHHH
Confidence 4443
No 317
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.44 E-value=41 Score=36.33 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=129.0
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHh---------cC-CCCcccHHHHHHHHh
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVEL---------LR-HPSPSVLIPALRTVG 210 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~l---------l~-~~~~~v~~~a~~~l~ 210 (431)
.+++..|+..+-++..++|..+.-++..+......... ...+ ..+-.+... .. +--..|++.++++|+
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~le-d~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLE-DLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 45666677777778888998888888877643322111 1111 111111111 11 112368899999999
Q ss_pred HhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH
Q 014088 211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 290 (431)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 290 (431)
.+..+.... .-...+..+.+++..+ ..+++...+..+........+....+. ..+++..++-+.+.+..++..|
T Consensus 155 ~~l~~~~~s----~~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 155 AYLKHMDES----LIKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHhhhhH----hhHHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHH
Confidence 987654311 1124577788888777 677766555544433221122222222 2356777788888899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhcc
Q 014088 291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 368 (431)
Q Consensus 291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (431)
+.++.-.+........+.+.. ++..+.+.+..-+. .-.......+..++...+...- +...=.+.|.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l---------~~~~n~~~~L 297 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDL---------FEQQNLEVGL 297 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHH---------HHHhhhhhcc
Confidence 999887766432222222222 33333333321111 0001111122222222211110 1111122466
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088 369 LEKIENLQSHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 369 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
.+++.....|.-..++..+.+.+..+.+..+
T Consensus 298 vp~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777778888888888888888888877653
No 318
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=80.34 E-value=16 Score=26.76 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=51.6
Q ss_pred HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337 (431)
Q Consensus 268 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L 337 (431)
...++..|++.++.+....+..++..+..++.+. .....+.+-|..+.|.++-...++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4557888999999998889999999999988765 5566667788888877766666666665554444
No 319
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=80.28 E-value=4 Score=29.02 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=46.3
Q ss_pred HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHH
Q 014088 98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALS 168 (431)
Q Consensus 98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~ 168 (431)
.+...+.++..++.+..+.++++..+.++..+..... .....+.+.+...+. +++.++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444678888888778899999999999999987642 222344555555544 556777777766653
No 320
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.46 E-value=27 Score=32.56 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHH
Q 014088 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
-.+.-++..+.+-+..++..|+..+..+....+.... .....+++.+..+..+.+..+|.....++-.+..........
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 3456677788889999999999999988766544333 233357788888888889999999999988876544322222
Q ss_pred HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
..-.=+++.+...|.+. .+.+|..++..+.-+....
T Consensus 137 p~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 22223455666667777 8999999999999888743
No 321
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=78.28 E-value=78 Score=31.75 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCChHhHHH---HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHH
Q 014088 32 AVQFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 108 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~---~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ 108 (431)
+.+.-|+-+|.-+..+....... -..+..+..++..+. .++..+..++++|.|+..+. ..++.+... ...++.
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~-~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNP-AGRELFMSR--LESILD 634 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCH-HHHHHHHHH--HHHHhh
Confidence 44555555555555433222111 112335555555555 56777788999999998874 445554432 222222
Q ss_pred Hhc---cccchhHHHHHHHHHHHhhcCC--CCCChhhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 109 QFN---EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 109 ~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
.+. ..++..++........|++--- ...+.....-+...+..+++. .+-+....++.+|++|+..+....+ +.
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~A 713 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-LA 713 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-HH
Confidence 221 2233344444333333433211 111111112222233333332 2445667788889999888765544 44
Q ss_pred HhCcHHHHHHhcCC
Q 014088 183 EAGVCPRLVELLRH 196 (431)
Q Consensus 183 ~~~~i~~L~~ll~~ 196 (431)
+.--+..++..++.
T Consensus 714 ~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 714 KNRSVDSIAKKLKE 727 (745)
T ss_pred HhcCHHHHHHHHHH
Confidence 44455666666544
No 322
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.70 E-value=81 Score=31.64 Aligned_cols=173 Identities=10% Similarity=-0.006 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhH----hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh--CcHH
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQT----RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCP 188 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~ 188 (431)
..+++..|+-+|..+..+.+....... ..++..++..++ .++..+..++++|.|+..++. ..+.+... .++.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~-g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPA-GRELFMSRLESILD 634 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHH-HHHHHHHHHHHHhh
Confidence 456677778888877777533222211 234445555555 567788899999999998843 33323321 1112
Q ss_pred HHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh----cccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088 189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQ 264 (431)
Q Consensus 189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 264 (431)
.+...-..++..+.........|++..- .+.--+.+..+.+...+ ....+.+....++.++++|+...+. ..
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~-~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS-VI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH-HH
Confidence 2222222233445544444444443211 11111123444444333 2221333455677788999886444 34
Q ss_pred HHHHhCCHHHHHHHHccC-CHhHHHHHHHH
Q 014088 265 AIIEAGIIGPLVNLLLNA-EFEIKKEAAWA 293 (431)
Q Consensus 265 ~l~~~~~i~~L~~ll~~~-~~~v~~~a~~a 293 (431)
.+.+.--+..+..-+... +.+..++.+..
T Consensus 711 ~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 444444456666655543 33444444443
No 323
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.54 E-value=45 Score=34.36 Aligned_cols=224 Identities=11% Similarity=0.080 Sum_probs=126.8
Q ss_pred hhhhhhhhhhHHHHHhhhcc--CCChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 8 FECILISLFVDQFFFHCFFS--CCFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
|+.+=.|.++...++++-.. ..+-.+|...+++...--. .-+.+. ....+..+.....+.++.-|..++++++
T Consensus 52 Fek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~----hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg 127 (970)
T KOG1988|consen 52 FEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGK----HLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILG 127 (970)
T ss_pred HhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccc----cchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHH
Confidence 45566676777666665432 2355667666666653111 111122 1123333344455688999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTD 162 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~ 162 (431)
.++.--| +....+.++..-..+.++--.+.++.+..+.+..... ...++...+..++... .+..+-.
T Consensus 128 ~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~----FA~si~gkis~mIef~d~~~~mkL~ 196 (970)
T KOG1988|consen 128 QLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKD----FACSICGKISDMIEFLDLPVPMKLS 196 (970)
T ss_pred Hhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhh----hHHHHHHHHHHHhhcccCCCCcchh
Confidence 8865433 3345566666543444444445566666666554211 1112333344444433 3445566
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccch
Q 014088 163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 241 (431)
Q Consensus 163 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 241 (431)
++.++..+..+... ...+....+.++.. +..+.....+.++++++...- ..-.+-+..+.+.++.+..
T Consensus 197 li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~-----~ai~eq~d~l~q~~ked~~ 265 (970)
T KOG1988|consen 197 LIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSL-----VAISEQSDVLLQFLKEDER 265 (970)
T ss_pred HhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHHH-----HHhHHHHHHHHHhhcCCch
Confidence 77777777654321 12344566666644 455555667777888775321 1122557788888886657
Q ss_pred hhHHHHHHHHHHHhhc
Q 014088 242 KSIKKEACWTISNITA 257 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~ 257 (431)
..++..+.|.+.+++.
T Consensus 266 kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 266 KIVRLKVLRKLDFLAK 281 (970)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 7788888888887764
No 324
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.09 E-value=10 Score=36.43 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=59.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cC-CCHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SH-DNTEIYEKAVKIL 391 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~-~~~~v~~~a~~~l 391 (431)
++..|..-+..+++.++..|+..|--++++++.. |+..+.+.++++..+.+. ++ .+..||+++..+|
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~-----------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS-----------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 4566667777778899999999999999998865 788888888888877764 55 7899999999999
Q ss_pred HHhcCC
Q 014088 392 ETYWVE 397 (431)
Q Consensus 392 ~~~~~~ 397 (431)
+.|...
T Consensus 108 ~~W~~a 113 (470)
T KOG1087|consen 108 DTWQQA 113 (470)
T ss_pred HHHHHH
Confidence 887653
No 325
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.75 E-value=8.4 Score=30.38 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=58.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHcCChHHHHHHhccccchh---HHHHHHHHHHHhhcCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRGK 133 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~---~~~~a~~~L~~l~~~~ 133 (431)
.++..|.+-|+++++.++..|+.+|-.+.... +.++..+....++..+..++....... ++..+...+..-+...
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999988765 456677777778888888885544444 8888888877776554
No 326
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=75.91 E-value=7.7 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 014088 360 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETY 394 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 394 (431)
...+.+.+.-..+..+..+ ++++++..|..++..+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6778889888889999888 9999999999999876
No 327
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.82 E-value=55 Score=33.57 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=57.4
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
+..|-.++. ++..|..++..|+.++...+...-.+.+..+++.|++.|..+.+..+...|+.+|..|.-.-+
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 333444444 456899999999999998888888899999999999999888677888888888888876433
No 328
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=74.28 E-value=14 Score=25.39 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=30.6
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 394 (431)
...+.+...-..+..|..|++++|+..|..++..|
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 66778888888899999999999999999999875
No 329
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=74.21 E-value=1e+02 Score=30.95 Aligned_cols=115 Identities=12% Similarity=0.210 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhhcCCHH-H-HHHHHHhCCHHHHHHHHccC---C--HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 014088 243 SIKKEACWTISNITAGNVN-Q-IQAIIEAGIIGPLVNLLLNA---E--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 315 (431)
Q Consensus 243 ~v~~~a~~~L~nl~~~~~~-~-~~~l~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 315 (431)
.-....||++|.++....+ . ++.++. ++..|+.+..-. + .-+..+...+++..-+.- ....+.+ ..++
T Consensus 498 ~nlNtLcWAIGSISGamsE~~EkrF~Vn--viKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL-kahw~FL--kTVv 572 (1053)
T COG5101 498 NNLNTLCWAIGSISGAMSEVNEKRFFVN--VIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL-KAHWSFL--KTVV 572 (1053)
T ss_pred hhHhHHHHHHhcccchhhhHHHHHHHHH--HHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH-HHHHHHH--HHHH
Confidence 4456789999999874222 2 223322 566666665322 2 112222333322211100 0111111 2368
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHH
Q 014088 316 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQA 362 (431)
Q Consensus 316 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (431)
.+|.+.++..+..++..|+..+.++.+.+...=...+++...+|...
T Consensus 573 ~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~ 619 (1053)
T COG5101 573 KKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVY 619 (1053)
T ss_pred HHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHH
Confidence 89999999999999999999999999888764332233333444433
No 330
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=73.63 E-value=55 Score=30.42 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC----------CChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
+.......+.++..|..+..-........++|.++.++-. +...+|..|+..+..++........ -+..
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ 308 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQP 308 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHH
Confidence 5677778888888998886555555667899988887731 2357899999999998865433222 1233
Q ss_pred CcHHHHHHhcCCCCcc--cHHHHHHHHhHh
Q 014088 185 GVCPRLVELLRHPSPS--VLIPALRTVGNI 212 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~--v~~~a~~~l~~l 212 (431)
.++..+.+.+.++... ...-|+..|..+
T Consensus 309 ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 309 RITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 4555566555544322 233354444443
No 331
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=73.28 E-value=83 Score=29.62 Aligned_cols=155 Identities=16% Similarity=0.076 Sum_probs=97.0
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----------CCChHHHHHHHHHHHHhccC
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~ 173 (431)
..+...|.+......+..++..+..|+++.....-.........|+.+.+ ..+..+...++.||.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45666665554456667778888888887654444444556666655543 12457899999999999998
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCC----C-CcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccc-------
Q 014088 174 TNDKIQAVIEAGVCPRLVELLRH----P-SPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNY------- 240 (431)
Q Consensus 174 ~~~~~~~~~~~~~i~~L~~ll~~----~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~------- 240 (431)
.+.......+......+.+.+.. . ...+..--++.|.-+..-. +...+.+.+.++++.+.+++.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 88776667766666666555422 1 1223333344444443322 334445567889999999985321
Q ss_pred -------hhhHHHHHHHHHHHhhcC
Q 014088 241 -------KKSIKKEACWTISNITAG 258 (431)
Q Consensus 241 -------~~~v~~~a~~~L~nl~~~ 258 (431)
+....-+++.++.|++..
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeec
Confidence 234455778888888864
No 332
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=72.96 E-value=38 Score=32.99 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=72.2
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcC---ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC---
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--- 258 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--- 258 (431)
++++.+++.+..+ .+..-.+++++ +.. .....+.+.+.++++.|+..|....+..++..|+.+|..+..-
T Consensus 21 ~~v~~llkHI~~~--~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDTP--AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCCc--HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5566666665433 34444444444 111 1234445557899999999998666788999999888777541
Q ss_pred ----------CHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCC
Q 014088 259 ----------NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 259 ----------~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~ 301 (431)
.......+.....+..|++.+-. .....-.+++.++..+.+..
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 13445666667788888887653 33555567777777777654
No 333
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.18 E-value=1.2e+02 Score=30.79 Aligned_cols=316 Identities=12% Similarity=0.064 Sum_probs=144.5
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 61 VPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 61 i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
++.+++-| .+.++..|..|=..|..++.. |++ +....-++.++..+--+-.|..+|..+..+.......
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s-pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES-PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC-HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 45555544 457888888888888888754 332 2222233334444444455666677766654322333
Q ss_pred hHhhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCCh---HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 140 QTRPALPALERLIHSND----DEVLTDACWALSYLSDGTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
..-.+-..++..+..+. +-+....+..++.+.+-.- ++.+ ..-.+.+..+.+.++.++.+-...++.++..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~-y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDE-YVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcccccccccc-chhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 33344555666665543 3345555555555553211 1111 22235677777788777766666666777666
Q ss_pred hcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC--CHHHHHHHHHhCCHHHHHHHHccCC-HhHHHH
Q 014088 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAE-FEIKKE 289 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~ 289 (431)
+..-. +........--..+..-+.+..-.++-.-|+..|.....- +.+....+.. .++..-.+.+.-.- -....+
T Consensus 156 vqemN-~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~-~vL~L~l~Cl~FDfiGss~DE 233 (1082)
T KOG1410|consen 156 VQEMN-QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLM-QVLKLNLNCLNFDFIGSSTDE 233 (1082)
T ss_pred HHHhh-CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHH-HHHHHHhhhcccccccccccc
Confidence 53210 0000000000011111111111222333333333333211 1111111111 01122222221110 000000
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH
Q 014088 290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 369 (431)
Q Consensus 290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (431)
...-+++.-. +...+..+.+...++..+++.++-.+...+.++.+|..++..-.. ..+......|...+. .|..
T Consensus 234 ssed~ctVQI--PTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRs---LFN~aeRa~yl~~Lv-~Gvk 307 (1082)
T KOG1410|consen 234 SSEDLCTVQI--PTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRS---LFNGAERAKYLQHLV-EGVK 307 (1082)
T ss_pred ccccccceec--CcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHH-HHHH
Confidence 1111121111 224566667777888999999988888888899888887654332 222222333455554 3444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 370 EKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 370 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
+.|+.=..-.++.-++.--++|.++-
T Consensus 308 ~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 308 RILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 44443333344555555455555443
No 334
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.63 E-value=2.6e+02 Score=34.53 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=81.2
Q ss_pred hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh--CcH--HHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVC--PRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i--~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
....+++..++.-+.+++..||+.+..+|.+++.........+++. .++ +.+..-++.....++.-.+.++..+..
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~ 1201 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS 1201 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH
Confidence 3446777778888888888999999999999886543222222221 111 111111122222223333333333332
Q ss_pred CChhh-------hH---H---Hh---hcCChHHHHHHhccc---chhhHHHHHHHHHHHhhcCCHHHHH--HHHHhCCHH
Q 014088 215 GDDMQ-------TQ---C---II---NHQALPCLLDLLTQN---YKKSIKKEACWTISNITAGNVNQIQ--AIIEAGIIG 273 (431)
Q Consensus 215 ~~~~~-------~~---~---~~---~~~~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~ 273 (431)
..+.. .. . +. +....- +.+..... ....+|..+..+++......+.... .-...+++.
T Consensus 1202 l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1202 LGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIA 1280 (3550)
T ss_pred cCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHH
Confidence 22110 00 0 00 000111 22222211 0233466666777666653222111 112345777
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 274 PLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 274 ~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
.+...+....+++...+...+......
T Consensus 1281 v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 888888888999999998888888765
No 335
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=71.12 E-value=1.1e+02 Score=29.90 Aligned_cols=227 Identities=14% Similarity=0.094 Sum_probs=118.9
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-----------CCCChhhHhhhHHHHHHhhc----CCC----hHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----------PQPLFEQTRPALPALERLIH----SND----DEVLTD 162 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~~~~~~~i~~L~~lL~----~~~----~~v~~~ 162 (431)
.|+.+.+++..+...-++.+++|.|++|--.. +.....-...++...+.++- .+. +...+-
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 67888888877778899999999999873221 11112223556666666553 222 333444
Q ss_pred HHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 163 ACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 163 a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
++.-+..... .+|.+-. -++..|+++ +-..+++..|+.+...=+.... ....++..=+.|.++.-+
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sL--- 246 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSL--- 246 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhh---
Confidence 4444443322 2222222 123444444 2345677777766555444333 233455555555665555
Q ss_pred chhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088 240 YKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 318 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 318 (431)
+...++.-+..+.-...+ .++.++.+++.-.+..+-..-.-.+++++..++.-|..-....+|.+--.-.-....+++
T Consensus 247 -s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 247 -SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred -hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 344566666666655553 455556666542222222111124678888888888887665554332221112356677
Q ss_pred HhhcCC----CCHHHHHHHHHHHHHH
Q 014088 319 CDLLNC----PDPRIVTVCLEGLENI 340 (431)
Q Consensus 319 ~~ll~~----~~~~v~~~al~~L~~l 340 (431)
++++-. ++-+......++|..+
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEM 351 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEM 351 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhc
Confidence 776632 2333444444555444
No 336
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=70.97 E-value=35 Score=30.33 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcC----CCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCCC
Q 014088 326 DPRIVTVCLEGLENILKAGEAEKNMG----NTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 326 ~~~v~~~al~~L~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~e~~ 400 (431)
+..+.+.++..+.|++..++...... .....+.+...+.+.|..+.|..+..+. ..+.......++.-+|.+-+.
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 45788899999999998754432111 1112345666778889999999987766 344445667777777665543
No 337
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=70.70 E-value=42 Score=31.45 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=91.3
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 014088 49 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 128 (431)
Q Consensus 49 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 128 (431)
+...+..++...+-.|+.+..+.++.-|+..-.+|.++.+.-...|..+.. +.-..+.+.+..+..-.=....+.+|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHH
Confidence 445566777888899999999999999998888888887544333433322 2233344444322222222334445555
Q ss_pred hhcCCCCCC-hhhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHH
Q 014088 129 FCRGKPQPL-FEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 206 (431)
Q Consensus 129 l~~~~~~~~-~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 206 (431)
+..+..-+. ....-.++..|+.+-+... .--......|+......++..... ++..+.++--..+..-....+
T Consensus 246 iIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~-----VIrglLK~WP~tnS~KEVmFL 320 (457)
T KOG2085|consen 246 IINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTET-----VIRGLLKYWPKTNSSKEVMFL 320 (457)
T ss_pred hcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHH-----HHHHHHHhcCCCCCcceeeeH
Confidence 554432221 1112233444444443321 111223333444444444333221 222233322111111111111
Q ss_pred HHHhHhhcC-ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088 207 RTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 207 ~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
.-+.-+... .+...+.+. ..+...+...++++ ...|.+.|++...
T Consensus 321 ~ElEEILe~iep~eFqk~~-~PLf~qia~c~sS~-HFQVAEraL~~wn 366 (457)
T KOG2085|consen 321 NELEEILEVIEPSEFQKIM-VPLFRQIARCVSSP-HFQVAERALYLWN 366 (457)
T ss_pred hhHHHHHHhcCHHHHHHHh-HHHHHHHHHHcCCh-hHHHHHHHHHHHh
Confidence 222222111 122222222 24556666777777 7888888876554
No 338
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.67 E-value=65 Score=27.27 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=65.2
Q ss_pred hHHHHHhhCC-CCHHHHHHH-HHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 61 VPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 61 i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
++.+-..+.. .+..+.... ..+++.+.... ....+.+...+ .++++=.++.++-++......
T Consensus 87 ~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------ 150 (213)
T PF08713_consen 87 LELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------ 150 (213)
T ss_dssp HHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------
T ss_pred HHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------
Confidence 4455555554 555555544 34444442211 12334444455 677777787777665544433
Q ss_pred hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.....++..+...+.+++.-++..+.|+|..++..+++....+++.
T Consensus 151 ~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 151 EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 2334566667777888899999999999999999888776655544
No 339
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=70.51 E-value=1.1e+02 Score=31.96 Aligned_cols=105 Identities=9% Similarity=0.139 Sum_probs=67.0
Q ss_pred hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCC
Q 014088 193 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGI 271 (431)
Q Consensus 193 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~ 271 (431)
.+.+++.......+.++.+++.-..-.... ...-++.-..-.... -..++.....+|.+++.-+++....+.. .+.
T Consensus 449 ~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~ 525 (727)
T PF12726_consen 449 SLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELLSDPDA 525 (727)
T ss_pred hhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHcCcch
Confidence 334444555555555555554321111100 111223333333333 4566777888999999877887777775 678
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 272 IGPLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
...++.++-+++.++.+.|...|......
T Consensus 526 ~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 526 AQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred hhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988753
No 340
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.23 E-value=47 Score=31.01 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=80.1
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHH
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 307 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 307 (431)
-+.-|+..+++. +..+|..|...+..+....+...+.-.. .+++.+..+..+.+..+|.....++-.++....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~~-~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHLY-ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHHH-HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 366788888998 9999999999998887754554442222 36778888888889999999999998877665444422
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 308 ~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
.++ .=+++.+...+..-.++++.-++..|..++...
T Consensus 137 p~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 211 112444555555667788888888888777665
No 341
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=70.15 E-value=1.1e+02 Score=29.90 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=87.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc----cc---cchhHHHHHHHHHHHhhcCCCC
Q 014088 63 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EH---AKLSMLRNATWTLSNFCRGKPQ 135 (431)
Q Consensus 63 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~----~~---~~~~~~~~a~~~L~~l~~~~~~ 135 (431)
.+.+.+.+.++..+..|+..|..=+. ... .++.++..+. .+ .|-....+...+++.|.++...
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~TDsG----L~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLETDSG----LQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhccCcc----HHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444444667777776666544221 111 2444444442 12 4667778888899999988655
Q ss_pred CChhhHhhhHHHHHHhhcC----------CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHH
Q 014088 136 PLFEQTRPALPALERLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI 203 (431)
Q Consensus 136 ~~~~~~~~~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 203 (431)
........++|.++.++-+ +...+|.-|+..+..++.+....... .+..++..+.+.+.++ ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 5555668889988887642 24568999999999998876655453 4446777777776654 334444
Q ss_pred HHHHHHhHhh
Q 014088 204 PALRTVGNIV 213 (431)
Q Consensus 204 ~a~~~l~~l~ 213 (431)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 4555555443
No 342
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=69.97 E-value=77 Score=27.83 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=66.2
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHHHHHHHHHHHhhcCCHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~ 261 (431)
+...++.++++++.++.. .-..++......-...-..+-.|-++.|.+++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 346778889998765531 111222221111111111122355677777776652 578899999999999986666
Q ss_pred HHHHHHHhCCHHHHHHH-HccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 014088 262 QIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 317 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~ 317 (431)
.+..+++. +..++.. +...+..+...-+..++.+-...--...+...+.|.++.
T Consensus 147 ~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 147 SREEVIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 66666652 4444443 333333333333333333322111123344445566654
No 343
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=69.56 E-value=35 Score=26.93 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=57.6
Q ss_pred CHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~al~~L~~l~~~ 343 (431)
++..|..-+.. .++.+...|+..|-.+..+++......+.+.+++.. |..++.. .+..++..++..+......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 34556666664 588899999999999999998888888888899997 8998863 2458888888888877654
No 344
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=69.09 E-value=1.2e+02 Score=30.29 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--HhhhHH
Q 014088 69 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALP 146 (431)
Q Consensus 69 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~ 146 (431)
.+-++.+|-.|+..|+--+...|. .+....++.+.-..| .+.+..++.....++..|+...|...... ...+-.
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 345678888888888887776665 344444677777777 77789999999999999999886665332 255666
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 147 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
.+++++..+..-||..++..+..+..-. ..+...+..+..++-+..++-+......+.++|.
T Consensus 361 rILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 361 RILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 7788877554448888877776654321 1111222333444545445544444444444443
No 345
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.09 E-value=83 Score=27.90 Aligned_cols=211 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred cCCChHHHHHHHHHHHHHcCC----ChHhHHHHHh-----------CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-
Q 014088 27 SCCFGAVQFEAAWALTNIASG----TSENTRVVID-----------HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS- 90 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~-----------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~- 90 (431)
++..+..-..|+..|..+... +++.++.+.+ .|+.+.+++.+.++ ...+.++..|..++...
T Consensus 17 ~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~ 94 (262)
T PF14225_consen 17 ESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS--STYELTLRLLSRLTPLPD 94 (262)
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC--CcHHHHHHHHHHHhcCCC
Confidence 345556666777776665432 2333333321 23444444555443 34455677777776432
Q ss_pred ------hHHHHHHHHcCChHHHHHHhccccc----hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHH
Q 014088 91 ------PKCRDLVLSNGALMPLLAQFNEHAK----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 160 (431)
Q Consensus 91 ------~~~~~~i~~~~~i~~l~~~l~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 160 (431)
.+.|-.+.-...+|.++..+. +++ ......++..|+.+|........ ..++....+---.+..+..
T Consensus 95 ~~lig~~~~rll~~~la~LP~ll~~~d-~~~~i~~~~~~~~~A~~La~~a~~~~~~~L---a~il~~ya~~~fr~~~dfl 170 (262)
T PF14225_consen 95 DPLIGDSQSRLLFLLLALLPRLLHAFD-DPNPIQPDQECIEIAEALAQVAEAQGLPNL---ARILSSYAKGRFRDKDDFL 170 (262)
T ss_pred ccccCCCCccHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHHHHHHHhCCCccH---HHHHHHHHhcCCCCHHHHH
Confidence 112222222334566666663 333 24455677888888865322211 1111111111112234455
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 240 (431)
Q Consensus 161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 240 (431)
..++..|..-.- ++. ....+..++.+|.++.+.++..++.+|..+....+-... ...+++..+.++++++.
T Consensus 171 ~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 171 SQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc
Confidence 555555543221 111 114556788889888889999999999999876553322 55578889999997662
Q ss_pred hhhHHHHHHHHHHHhh
Q 014088 241 KKSIKKEACWTISNIT 256 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~ 256 (431)
-.+|+.+|-+..
T Consensus 242 ----~~eAL~VLd~~v 253 (262)
T PF14225_consen 242 ----WMEALEVLDEIV 253 (262)
T ss_pred ----HHHHHHHHHHHH
Confidence 345555554443
No 346
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=68.96 E-value=24 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=30.7
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 394 (431)
...+.+.+.-..+..|..|++++++..|..++..|
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 66788888888899999999999999999998876
No 347
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=68.91 E-value=1.4e+02 Score=30.60 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=85.9
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccc--cchhHHHHHHHHHHHhhcCCCCCC--h----
Q 014088 67 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPL--F---- 138 (431)
Q Consensus 67 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~--~---- 138 (431)
+|-..+|---..++.+|.++|.... +..... ++++|-.++-.. ++..++...-+.+..|....-... .
T Consensus 219 LlvqesPvh~lk~lEtLls~c~KKs--k~~a~~--~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~Wyf 294 (988)
T KOG2038|consen 219 LLVQESPVHNLKSLETLLSSCKKKS--KRDALQ--ALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYF 294 (988)
T ss_pred HhhcccchhHHHHHHHHHHHHhhhh--HHHHHH--HHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHH
Confidence 4444556666677888888886552 233332 455555554322 122232222222222221111111 1
Q ss_pred -----hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088 139 -----EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213 (431)
Q Consensus 139 -----~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 213 (431)
.....++.+|..+..+.=++++..++.++.++..+.++.-. .++..+++-|.+++..+...|-..|.+|.
T Consensus 295 E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 295 EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 11234455555555566789999999999999988886644 45677889999998899999988898887
Q ss_pred cCChh
Q 014088 214 TGDDM 218 (431)
Q Consensus 214 ~~~~~ 218 (431)
...+.
T Consensus 370 ~~HPn 374 (988)
T KOG2038|consen 370 AKHPN 374 (988)
T ss_pred hhCCc
Confidence 76663
No 348
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=68.39 E-value=36 Score=26.11 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch
Q 014088 282 AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 358 (431)
Q Consensus 282 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 358 (431)
.+.......+.-|+..+... ..+.. ++..|..-+ +.+++....+++..|..++.++...
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------- 76 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------- 76 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-----------
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-----------
Confidence 34455556666777777654 33333 355566655 4567788889999999999988653
Q ss_pred HHHHHH-hhccHHHHHHhhc-C-----CCHHHHHHHHHHHHHhcCCC
Q 014088 359 FAQAID-DAEGLEKIENLQS-H-----DNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 359 ~~~~l~-~~~~~~~l~~l~~-~-----~~~~v~~~a~~~l~~~~~~e 398 (431)
|..-+. ....++.+..+.. + ....||++|..+++-+.++|
T Consensus 77 ~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 77 FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 344443 2233344433322 1 12469999999999877654
No 349
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=67.78 E-value=1.1e+02 Score=29.59 Aligned_cols=300 Identities=14% Similarity=0.147 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhcCCChH-HHHHHHHcCChH-HHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHH
Q 014088 73 DDVREQAVWALGNVAGDSPK-CRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALE 149 (431)
Q Consensus 73 ~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~ 149 (431)
...|..++.+|+.++..-+. .... ... .|+..| +++...-|..++.++...+...... .......+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 45577788899988754221 1112 122 467777 6666666667777888777765221 1111345667778
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHH-----HHHHhcCC-----CCcccHHHHHHHHhHh----hcC
Q 014088 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP-----RLVELLRH-----PSPSVLIPALRTVGNI----VTG 215 (431)
Q Consensus 150 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-----~L~~ll~~-----~~~~v~~~a~~~l~~l----~~~ 215 (431)
.+|..+.+..-......+..+-.........+.+.|.++ .|-...+. ++.--...|-.+.+.. ...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 888744332222233333333333333344444445422 11111111 1111122222222211 110
Q ss_pred Ch-hh----hHHHh--hcCC---hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CH
Q 014088 216 DD-MQ----TQCII--NHQA---LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EF 284 (431)
Q Consensus 216 ~~-~~----~~~~~--~~~~---l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~ 284 (431)
-. .. .+.+- ...+ +......-... +..++..++.++..+-.- |+-.. .+|..|++-++.+ +.
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~l-P~KLn-----PiIrpLMdSIK~Een~ 327 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGGL-PKKLN-----PIIRPLMDSIKREENE 327 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-CCCcc-----HHHHHHHHHhhccccH
Confidence 00 00 00000 0000 11111111111 333444444444444332 22122 2566788888776 88
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---CHHHH--HHHHHHHHHHHHhhhhhhhcCC-CCCcch
Q 014088 285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPRIV--TVCLEGLENILKAGEAEKNMGN-TGGVNL 358 (431)
Q Consensus 285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~--~~al~~L~~l~~~~~~~~~~~~-~~~~~~ 358 (431)
.++..++.+|..|..... ..+.-....++..|+.++-.+ .|++. ...-..+..+.+.......... ......
T Consensus 328 ~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~ 405 (441)
T PF12054_consen 328 LLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQ 405 (441)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhh
Confidence 999999999998875331 000001223466666666322 22222 1112222222222111110000 011111
Q ss_pred HHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088 359 FAQAIDDAEGLEKIENLQSHDNTEIYEKA 387 (431)
Q Consensus 359 ~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 387 (431)
-...+.+.|+...|..|...-.+++.++.
T Consensus 406 ~~a~I~RrGA~~aL~~l~~~FG~~Lf~~l 434 (441)
T PF12054_consen 406 KEARIQRRGAELALEQLAKRFGSSLFEKL 434 (441)
T ss_pred hhhHHHhcCHHHHHHHHHHHHhHHHHHhh
Confidence 24568888988888888777777766554
No 350
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.74 E-value=46 Score=30.90 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=67.9
Q ss_pred hhhHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC----------CCcccHHH
Q 014088 142 RPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------PSPSVLIP 204 (431)
Q Consensus 142 ~~~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~ 204 (431)
..++|.++.++... +.......+.++..|..++.-..+..+. .+++.++.++-. +.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777766532 5677788888888888887655543333 477888877622 23578899
Q ss_pred HHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh-hHHHHHHHHHHHh
Q 014088 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNI 255 (431)
Q Consensus 205 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 255 (431)
|+.+++.++........ -+...+...+.+.+.++..+ ..+.-|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999864332211 12234455666666554222 3355555555544
No 351
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=66.04 E-value=26 Score=27.87 Aligned_cols=127 Identities=10% Similarity=0.112 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCC-HHHHHHHHHCCChHHHHhhc-CCCCHHHHHHHH
Q 014088 258 GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLL-NCPDPRIVTVCL 334 (431)
Q Consensus 258 ~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~al 334 (431)
++++..+...+..++..+++++.. ....++...+.+++-+..+-. +...-++.+.+.+..++..- .-.+.++...-.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 456788888999999999999988 478899999999988876543 23344556777788777653 456778888878
Q ss_pred HHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHH---HHhhcCCCHHHHHHHHHHHHH
Q 014088 335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI---ENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 335 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---~~l~~~~~~~v~~~a~~~l~~ 393 (431)
..|..+.-.-........-.. +.+.++.. ..+.+|++.-+|.++..+.=.
T Consensus 94 sfLK~lSlkln~~tv~fffn~---------~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Ln 146 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNE---------RNDSFPLYTEAIKFYNHPDSMVRTAVRTITLN 146 (149)
T ss_pred HHHHHHHhhcCCCceeEeEec---------CCCCCCcHHHHHHhhcCcchHHHHHHHHHHHh
Confidence 888877655444322110000 11122222 345789999998888776543
No 352
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=65.74 E-value=34 Score=22.20 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 014088 359 FAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDEDEP 403 (431)
Q Consensus 359 ~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~e~~~~~ 403 (431)
.+..+.+.|..+.+..+- ..+++++.+...++.+-+..+|.+++.
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~~ 56 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEGQ 56 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCC
Confidence 478899999999999884 456899999999999988887766543
No 353
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=65.60 E-value=53 Score=26.11 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=51.5
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHH
Q 014088 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 223 (431)
Q Consensus 144 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 223 (431)
-...++.+|+.+...-....+..|.+=..-.-+. ...++.+++..++.-=.....--...|+..|+.|.-+..
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------ 95 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------ 95 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence 3445667777655444444555555433222222 223444454444433222222335668888887765322
Q ss_pred hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
+..|+.+|.+. +..+...|+.+|.+-..
T Consensus 96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67799999888 89999999999987654
No 354
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=65.54 E-value=1.2e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=41.0
Q ss_pred cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088 199 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 258 (431)
Q Consensus 199 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 258 (431)
..-++.|...+.++..+.++... ..+..-+.+..+. +..+|+.|..-|--+|.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 34566778888888777665555 3455667788888 899999999999888876
No 355
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=65.32 E-value=74 Score=32.64 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh
Q 014088 72 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151 (431)
Q Consensus 72 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l 151 (431)
.+..|..++..|+.+....+.....+.+...+..|++.|..+.+..+...|+.+|.-|.=.-+.........++..+..+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 45778889999999998777777888899999999999988888888888888888776554433333334444444444
Q ss_pred h
Q 014088 152 I 152 (431)
Q Consensus 152 L 152 (431)
+
T Consensus 161 ~ 161 (668)
T PF04388_consen 161 L 161 (668)
T ss_pred H
Confidence 4
No 356
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=64.57 E-value=8.5 Score=28.53 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 014088 35 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 77 (431)
Q Consensus 35 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~ 77 (431)
...+..+..++. .|+....+++.|+++.|+.+|.+++..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 456677888887 678899999999999999999998877643
No 357
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.87 E-value=14 Score=29.10 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred HHHHHHHHccCC----HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088 272 IGPLVNLLLNAE----FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337 (431)
Q Consensus 272 i~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L 337 (431)
+..+.+.+.... .++...++.++..+..... ...+.+.+.++.+.+++..+ ..+..|+++|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~---~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIP---IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC---HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 444455554432 7788888888888887543 44455667888888888543 3356666554
No 358
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.63 E-value=2.2e+02 Score=30.73 Aligned_cols=140 Identities=7% Similarity=0.006 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 320 (431)
.+.+|..++..|+--+...|+ .+++.-.+..+=-.|++.+..||..++.+|-.+..+......-.+.-..+=..+++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 789999999999887765555 44555567777777888999999999999999988742111111222334556777
Q ss_pred hc-CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH-HHhcCCC
Q 014088 321 LL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL-ETYWVEE 398 (431)
Q Consensus 321 ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l-~~~~~~e 398 (431)
+. ...+..|+...+..+.... .. ..|. ..-+..+..|.-+.+++++..|-..+ ..+|...
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~-~~----------------g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~ 438 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLS-SS----------------GLLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERV 438 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHh-cc----------------cccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHhhccc
Confidence 76 3334555544443332221 11 1122 23366688888888999988886666 4455555
Q ss_pred CCC
Q 014088 399 DED 401 (431)
Q Consensus 399 ~~~ 401 (431)
.+.
T Consensus 439 a~~ 441 (1048)
T KOG2011|consen 439 ANS 441 (1048)
T ss_pred cch
Confidence 554
No 359
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.98 E-value=10 Score=34.52 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCChHhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 37 AAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 37 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
..+.++++|...++..+.+.+-|+++.++.-. .+.+|-+++..+.|+.++..++.++++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56789999999999999999999999888744 4578999999999999999988887776654
No 360
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=62.66 E-value=1.2e+02 Score=27.62 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHh-----------CCHHHHHHHHc------cCCHhHHHHHHHHHHHhcCCCCH
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEA-----------GIIGPLVNLLL------NAEFEIKKEAAWAISNATSGGSN 303 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-----------~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~~~ 303 (431)
...+|..|+.++.....++++.+..+++. .....++..|- ..++--.--|+.++.++...+.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~- 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP- 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H-
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH-
Confidence 57889999999999999888888777641 11223555554 2233334468888888887652
Q ss_pred HHHHHHHH------CC------ChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhh
Q 014088 304 EQIKFLVS------QG------CIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366 (431)
Q Consensus 304 ~~~~~l~~------~~------~l~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (431)
+.+..+.+ .. .++.+..++. ..++.++..-+..|...+..+... +..++.+.
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~A-----------V~~FL~~~ 198 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDA-----------VNDFLSEG 198 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHH-----------HHHHHCST
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHH-----------HHHHHcCc
Confidence 33222221 11 1455555543 336677766677777766655443 57778877
Q ss_pred ccHHHHHHh---hcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 014088 367 EGLEKIENL---QSHDNTEIYEKAVKILETYWVEEDEDEPL 404 (431)
Q Consensus 367 ~~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~~e~~~~~~ 404 (431)
+.++.|.+. ..+.+.-|+-.+.-+|..++....++.+.
T Consensus 199 s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~ 239 (312)
T PF04869_consen 199 SNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPI 239 (312)
T ss_dssp THHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC
T ss_pred chHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCc
Confidence 788888875 24567889999999998888766555443
No 361
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=62.66 E-value=40 Score=25.08 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=53.0
Q ss_pred CChHHHHHHhcc---cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCC
Q 014088 227 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 227 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 301 (431)
|++..+.+.+.+ ..+...|+.+...++.+..-...... .+.|.++..|+.. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445555555555 33678899999999998873233222 2567777777764 5689999999999988766
Q ss_pred CHHHHHHH
Q 014088 302 SNEQIKFL 309 (431)
Q Consensus 302 ~~~~~~~l 309 (431)
+++....+
T Consensus 86 ~~~~l~~l 93 (107)
T PF08064_consen 86 DEEDLGPL 93 (107)
T ss_pred CHHHHHHH
Confidence 65555443
No 362
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=62.03 E-value=65 Score=24.16 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=52.2
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh-----c-CCCCHHHHHHHHHHHHHH
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL-----L-NCPDPRIVTVCLEGLENI 340 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~v~~~al~~L~~l 340 (431)
++..|..-+.+.++.++..|+..|-.++.++++.....+....++..++.. . ...+..++..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455677777888999999999999999999988888887777666666543 1 123567888877776543
No 363
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.25 E-value=2.4e+02 Score=30.48 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=136.3
Q ss_pred HHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccc----
Q 014088 38 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH---- 113 (431)
Q Consensus 38 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~---- 113 (431)
-.+|..+...+.++...+.+..++..++.++ -+++-|...++.+..+....+.... ..-+-+++..|+..
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 3467778887888999999999999888888 4556677777787777654443100 01234455555321
Q ss_pred ---c----chhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhc----------CCChHHHHHHHHHHHH-----h
Q 014088 114 ---A----KLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIH----------SNDDEVLTDACWALSY-----L 170 (431)
Q Consensus 114 ---~----~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~----------~~~~~v~~~a~~~L~~-----l 170 (431)
. ..+.......+++.+..-+... ......+++..|...|. .+|.-+.......+.. +
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 0 1234445556666665443222 22233444444444332 1121111111111111 1
Q ss_pred ccCChH------------HHHHHHHhC---------cHHHHHHh----cCCCCcccHHHHHHHHhHhhcC-----C----
Q 014088 171 SDGTND------------KIQAVIEAG---------VCPRLVEL----LRHPSPSVLIPALRTVGNIVTG-----D---- 216 (431)
Q Consensus 171 ~~~~~~------------~~~~~~~~~---------~i~~L~~l----l~~~~~~v~~~a~~~l~~l~~~-----~---- 216 (431)
+.+..+ ....+...| .++.+..+ +..+.-.--..|+..+-.+-.. .
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 122211 111122223 12222111 2222211222233333222110 0
Q ss_pred -hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc---cCCHhHHHHHHH
Q 014088 217 -DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAW 292 (431)
Q Consensus 217 -~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~ 292 (431)
....+.+.+++++..+++.+-.. .++.+.+-+..+..+++.++.....+...|+++.+++++. +++...-..+..
T Consensus 897 fnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 12345678889999999988877 7899999999999999988888777777899988888764 334444445554
Q ss_pred HHHHhc
Q 014088 293 AISNAT 298 (431)
Q Consensus 293 aL~~l~ 298 (431)
++.-++
T Consensus 976 IvemLg 981 (2799)
T KOG1788|consen 976 IVEMLG 981 (2799)
T ss_pred HHHHHh
Confidence 444443
No 364
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=60.63 E-value=2e+02 Score=29.21 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=52.5
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 229 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
+..+-.+|... ++.+|+..=.+++-++..+|.. .++..|-++.++.+.++..+++.+++-+-...
T Consensus 642 lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGT 706 (878)
T KOG2005|consen 642 LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT 706 (878)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence 55677778888 8899998888999888877763 35777888888899999999999998776654
No 365
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=60.62 E-value=41 Score=26.72 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred ChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHH
Q 014088 48 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 124 (431)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~ 124 (431)
+++.=+.+.+.+++..+.++++. ....++.+.+.+++-+... ++..-..+...+.+..++..--.-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 34566788889999999999987 6677777777777666421 11222345556666666666545568889998888
Q ss_pred HHHHhhcCCCCC--Chhh--Hh---hhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 125 TLSNFCRGKPQP--LFEQ--TR---PALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 125 ~L~~l~~~~~~~--~~~~--~~---~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
.|..++..-... .... .. ++...-+++.++++.-+|.++-..+.++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 888888654211 1111 12 33444566777888888887766666553
No 366
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=60.39 E-value=48 Score=24.72 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=51.9
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCC
Q 014088 227 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 227 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 301 (431)
|++..+.+.+.+.. ....|+.+..+++.+......... .+.|.++..|+.. .++++..|+.++..+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45566666665552 345688899998888763122111 2567788888765 7789999999999988766
Q ss_pred CHHHHHHH
Q 014088 302 SNEQIKFL 309 (431)
Q Consensus 302 ~~~~~~~l 309 (431)
+++....+
T Consensus 86 ~~~~l~~l 93 (107)
T smart00802 86 KEEELGPL 93 (107)
T ss_pred CHHHHHHH
Confidence 55554443
No 367
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.93 E-value=1.9e+02 Score=30.36 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=95.8
Q ss_pred cccchhhhhhhhhhhhHHHHHhhhccCC-ChHH---HHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----CC
Q 014088 2 CCFDLRFECILISLFVDQFFFHCFFSCC-FGAV---QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PT 72 (431)
Q Consensus 2 ~c~~~~~~~g~~~~~v~~~lv~~L~~s~-~~~~---~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~ 72 (431)
.||+. +..|+...+++ .+-+.+..++ +|+. -+.++..+..++.+-.+. +...+|.+++...+ .+
T Consensus 450 ~~Y~i-lgd~ll~~L~~-~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-----~~~~i~rl~~~~asik~S~~n 522 (982)
T KOG2022|consen 450 SSYSI-LGDGLLDFLID-TLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-----ESTWIPRLFETSASIKLSAPN 522 (982)
T ss_pred HHHHH-HhHHHHHHHHH-HHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHHHHHhccccccccCC
Confidence 34443 23456666655 4455555444 4433 344455555555422211 12347777776643 47
Q ss_pred HHHHHHHHHHHHHhcC---CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHH
Q 014088 73 DDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149 (431)
Q Consensus 73 ~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 149 (431)
+.+...+...++.++. +.|. .-.-.++.|++-|. +++.-..+...|..+|++.+..-.....+++..+-
T Consensus 523 ~ql~~Tss~~igs~s~~l~e~P~-----~ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 523 PQLLSTSSDLIGSLSNWLGEHPM-----YLNPSLPLLFQGLH---NSKESEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCc-----ccCchHHHHHHHhc---CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 7888888888888773 2221 11235677777773 34445666677999999876666666678888888
Q ss_pred HhhcCC--ChHHHHHHHHHHHHhccC
Q 014088 150 RLIHSN--DDEVLTDACWALSYLSDG 173 (431)
Q Consensus 150 ~lL~~~--~~~v~~~a~~~L~~l~~~ 173 (431)
..+... .+..+..+..+++.+...
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHh
Confidence 888755 467788888999887643
No 368
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=59.76 E-value=1.4e+02 Score=27.16 Aligned_cols=102 Identities=10% Similarity=0.118 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCChHhH---------------------HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcC
Q 014088 32 AVQFEAAWALTNIASGTSENT---------------------RVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG 88 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~---------------------~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~ 88 (431)
.++.+-++.+.+++.+....+ ..-.+.|.+..+++.+.. .+...+-..+.++-.+.+
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 488899999999987432211 111235788888887765 456667777788888876
Q ss_pred CChH--HHHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCC
Q 014088 89 DSPK--CRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 89 ~~~~--~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~ 133 (431)
..+. -+..+.+.|.++.++..+.++. +..+.+...-+|+.|.+.+
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFN 175 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCC
Confidence 5543 4667889999999999886443 4468888889999998875
No 369
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.75 E-value=2.3e+02 Score=29.49 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=41.7
Q ss_pred hhccCC-ChHHHHHHHHHHHHHcCCC----hHhHHHHHhC--CCh-HHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 24 CFFSCC-FGAVQFEAAWALTNIASGT----SENTRVVIDH--GAV-PIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 24 ~L~~s~-~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~--g~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
++.+.. ++.+|..|+..+.|.+..+ ++....+.+. ..+ ..++.++-+....++.+...+|+-+...+
T Consensus 45 Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 45 LVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccc
Confidence 444443 6789999999999887632 1111122221 122 33455666677889999999999988544
No 370
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.52 E-value=1.3e+02 Score=26.45 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=56.4
Q ss_pred hCCChHHHHHhhCCCCHHH--------HHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHH
Q 014088 57 DHGAVPIFVRLLSSPTDDV--------REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLS 127 (431)
Q Consensus 57 ~~g~i~~L~~lL~~~~~~v--------~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~ 127 (431)
+..+.+.++++++.++..+ -+....++..+ ..|-++.|.+++.+. .+.-+|..|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3468999999997655421 12222233333 344566777777432 35678888999999
Q ss_pred HhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHH
Q 014088 128 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 162 (431)
Q Consensus 128 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 162 (431)
.+....+..+......+-..+-..+..++..+...
T Consensus 139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~ 173 (249)
T PF06685_consen 139 FLVHEGPISREEVIQYFRELLNYFLERNPSFLWGS 173 (249)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 99998776665555544455555465454443333
No 371
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.99 E-value=2.7e+02 Score=30.04 Aligned_cols=134 Identities=11% Similarity=0.133 Sum_probs=86.5
Q ss_pred CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHH
Q 014088 195 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIG 273 (431)
Q Consensus 195 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~ 273 (431)
++-.+.+|..|+..|+.++..-+ ..+++...++.+-=.|++. +..||..++.+|-.|...+. ...-.+.-+.+=.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 44678999999999999987544 4566666777777777777 99999999999999987521 1112222344566
Q ss_pred HHHHHH-ccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088 274 PLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339 (431)
Q Consensus 274 ~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~ 339 (431)
.++++. .+-+..|+...+..+..+...+ ++...-+..+..++-..++.++..+...++.
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 777777 2335666655555544443222 1233335666677767777777666655543
No 372
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.87 E-value=3.1e+02 Score=30.66 Aligned_cols=202 Identities=12% Similarity=0.163 Sum_probs=104.1
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH
Q 014088 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 266 (431)
Q Consensus 187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 266 (431)
+..+++-|...|+.++..|+..+..+....+......+-........++..+. +..||...-.++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566777778899999999999999865432211111111223344455666 89999999988888876423322333
Q ss_pred HHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc-------------------CCCCH
Q 014088 267 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------------------NCPDP 327 (431)
Q Consensus 267 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-------------------~~~~~ 327 (431)
++. .++...-.-.+.+..|...|...+............-.+.+..+.....+.+ +.+-.
T Consensus 122 LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HHh-hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Confidence 332 3333333333346667777777776665532211111112222222222221 01112
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 328 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
.+...++.++..++......+... .....+...-.-+.+..+..+..+.++..+.+++-.+.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~------~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELH------SLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhh------hhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 344556666666664333322210 001111111124556777888888887777666655443
No 373
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.18 E-value=2.8e+02 Score=29.29 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-----CCCC--hhhHhhhHHHHHHh-hcCC-ChHHHHH
Q 014088 92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----PQPL--FEQTRPALPALERL-IHSN-DDEVLTD 162 (431)
Q Consensus 92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----~~~~--~~~~~~~i~~L~~l-L~~~-~~~v~~~ 162 (431)
...+.+.+...++.++.++..+.++.++.+|...|+.+++.. |... .......+..|+.. |+.+ .......
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs 260 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVS 260 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHH
Confidence 445566677789999999987778999999999999988773 2211 11113444444433 3321 1222222
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC----CCcccHHHHHHHHhHhhcCChhhhHHHhhcC---ChHHHHHH
Q 014088 163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQ---ALPCLLDL 235 (431)
Q Consensus 163 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~l~~L~~l 235 (431)
.+..+..+......... . .....++.+ .++.+....+.++..-.. ...+.+.+.. .++.=...
T Consensus 261 ~i~vlI~ll~~~r~~~~-----~--~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~~~~~~~~l~tt~g~ 330 (838)
T KOG2073|consen 261 GIIVLISLLNPRRDTVE-----T--NSTTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLLEPEKLDLLETTYGE 330 (838)
T ss_pred HHHHHHHhcCccccccc-----c--cceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhcCCccchhhhhhhhc
Confidence 22222222111100000 0 000122211 233444444444433221 1222222221 22222222
Q ss_pred hcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccC
Q 014088 236 LTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 282 (431)
Q Consensus 236 L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 282 (431)
+..+ -...|...+..++.+.. .+....+.+...+++..+++++..-
T Consensus 331 l~pP-LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 331 LEPP-LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred cCCC-cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 2222 34567777777777665 5566667777777777777777554
No 374
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.53 E-value=99 Score=25.08 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHH-hhcCCC--hHHHHHHHHHHHHhccC
Q 014088 97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSND--DEVLTDACWALSYLSDG 173 (431)
Q Consensus 97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~--~~v~~~a~~~L~~l~~~ 173 (431)
+.+....+.+++.+ .+.+..+...+++++..+.......-....+-+++.+.. ++.+++ ..-+..++.++..++.+
T Consensus 69 ~lk~~l~~~Ll~~~-~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNL-SSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 34445566777777 345588888999999999866322222233556666655 666554 46778899999999987
Q ss_pred ChHHHHHH
Q 014088 174 TNDKIQAV 181 (431)
Q Consensus 174 ~~~~~~~~ 181 (431)
+.-..+.+
T Consensus 148 p~~l~~lf 155 (168)
T PF12783_consen 148 PQFLVDLF 155 (168)
T ss_pred hhHHHHHH
Confidence 65444433
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=85 Score=33.00 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=64.3
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhh---cCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFC---RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 178 (431)
++..-..+| ++++..+|..++.++..-. ...+..-........|.++..+..+|+-+...|+.++.+++....+..
T Consensus 804 Il~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 804 ILGRGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 344445555 7778888888888776432 232444455567899999999999999999999999999998877654
Q ss_pred HHHHHhCcHHHHHHhc
Q 014088 179 QAVIEAGVCPRLVELL 194 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll 194 (431)
..=.-..++|.+-.++
T Consensus 883 ~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4322235566655444
No 376
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.10 E-value=2.3e+02 Score=27.96 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=81.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--------CCcccHHHHHHHHhHhhcC
Q 014088 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--------PSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 144 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~v~~~a~~~l~~l~~~ 215 (431)
.+..+.+.+..+++..+..|+..|.. + + ..+ .+++.++.++.. .+-......++..+.|..+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---D-s-GL~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---D-S-GLQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---C-c-cHH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 44455566666777888887777642 1 1 222 245666666543 3444556667777777665
Q ss_pred ChhhhHHHhhcCChHHHHHHhc----------ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--C
Q 014088 216 DDMQTQCIINHQALPCLLDLLT----------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--E 283 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~----------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~ 283 (431)
..-.....+. .++|.++..+- +. ...+|.-|+..+..++..-...-.. ++..++..+.+.+.+. .
T Consensus 278 p~i~lepYlh-~L~PSvlTCvVsk~l~~~p~~dn-hwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 278 PNIFLEPYLH-QLVPSVLTCVVSKNLCLRPELDN-HWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred CccchhhHHH-HHhhHHHHhhhhhhccCCccccc-hHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 4322222222 45666665552 22 5679999999999998853333333 4455677777777665 4
Q ss_pred HhHHHHHHHHHHHh
Q 014088 284 FEIKKEAAWAISNA 297 (431)
Q Consensus 284 ~~v~~~a~~aL~~l 297 (431)
.....-++..|..+
T Consensus 355 ~st~YGai~gL~~l 368 (576)
T KOG2549|consen 355 LSTHYGAIAGLSEL 368 (576)
T ss_pred chhhhhHHHHHHHh
Confidence 44445555555554
No 377
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.23 E-value=16 Score=32.59 Aligned_cols=16 Identities=44% Similarity=0.793 Sum_probs=12.3
Q ss_pred cCCCCCCCCCCCCcCC
Q 014088 416 FAGNGLPVPSGGFNFG 431 (431)
Q Consensus 416 ~~~~~~~~~~~~~~~~ 431 (431)
..|--++.|||||+|+
T Consensus 58 ligpv~~mPSGGf~y~ 73 (412)
T COG4370 58 LIGPVLTMPSGGFIYM 73 (412)
T ss_pred eecccccCCCCCcccc
Confidence 3455678999999985
No 378
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=53.20 E-value=1.9e+02 Score=26.75 Aligned_cols=193 Identities=10% Similarity=0.050 Sum_probs=98.8
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQA 180 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 180 (431)
++..+..++.+..++......+.++..=...- .......++..+.+-+.+..+.+|+.-+..++....... .....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 45667777767777777777666655443331 112225677788888888888899888888887765110 11111
Q ss_pred HHHhCcHHHHHHhc----CCCCcccH----HHHHHHHhHhhcCChhhhH-------HHh-hc--C--ChHHHHHHhcccc
Q 014088 181 VIEAGVCPRLVELL----RHPSPSVL----IPALRTVGNIVTGDDMQTQ-------CII-NH--Q--ALPCLLDLLTQNY 240 (431)
Q Consensus 181 ~~~~~~i~~L~~ll----~~~~~~v~----~~a~~~l~~l~~~~~~~~~-------~~~-~~--~--~l~~L~~lL~~~~ 240 (431)
+.. .+++.|...+ .++-+... ..+.-.+. +......... .+. +. . .-+.+..-+ .
T Consensus 100 ~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 100 FAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 222 4666666665 33322211 11222222 1110000000 000 00 0 001122221 2
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCC
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 302 (431)
+++.....+.++..+.....+....-.....-..++.++-+. .+++|+.|..++..+.....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 344455666666666543222111111122455677777776 89999999999999887654
No 379
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=53.17 E-value=68 Score=27.19 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=44.0
Q ss_pred HhhcCChHHHHHHhcccc-----------------hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088 223 IINHQALPCLLDLLTQNY-----------------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 285 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~~-----------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 285 (431)
+.+.+++..++++|+.+. -.++...+...|..++.++.++...+.+. ++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhcc
Confidence 335566666666664331 13567788899999999988888877764 44334443332222
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 286 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
.-..+..++..+..++. +....+.+ ..++.+++++.....+ ..-+..|..++...+
T Consensus 117 ~~~~~~d~l~~i~~dN~-~L~~~i~e-~~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNP-ELCESISE-EHIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred CCchHHHHHHHHHHCcH-HHHHHhhH-HHHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 22356777777777553 44444333 3488888888763322 234556666655443
No 380
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=52.81 E-value=71 Score=22.99 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=42.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHh
Q 014088 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 170 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l 170 (431)
+.+..+|..|+.+|..+++............+...+.+.+.++ +.....-|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999998764444444457777788877754 455677788888776
No 381
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.79 E-value=18 Score=21.59 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=20.6
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088 365 DAEGLEKIENLQSHDNTEIYEKAVKIL 391 (431)
Q Consensus 365 ~~~~~~~l~~l~~~~~~~v~~~a~~~l 391 (431)
.....+.+..-+.++++.||+.|.++|
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 344556677778999999999998764
No 382
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=51.81 E-value=77 Score=23.57 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=45.7
Q ss_pred hhHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHhhcC
Q 014088 143 PALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 143 ~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~ 215 (431)
|++..+...+.+ .+...+..++.++..+.+-...... .+.+.+...|+. ..++.+..++.+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 444555555554 4667788999999988874443333 455667776654 4457888898888887764
No 383
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.44 E-value=84 Score=30.48 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=57.4
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK 342 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~l~~ 342 (431)
++..|.+-+.+.++.++..|+..|-.+..++++..-..+.+.++++.++.+.+.. +..|+.+++..|...-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 4556777778888899999999888888888877777888899999999888754 66888888887765543
No 384
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=49.30 E-value=1.7e+02 Score=25.23 Aligned_cols=131 Identities=13% Similarity=0.061 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC-------------h-----HHHHHHHHHHHHhccCChH
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-------------D-----EVLTDACWALSYLSDGTND 176 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~-------------~-----~v~~~a~~~L~~l~~~~~~ 176 (431)
+......+|..+..|...+..........+++.+.+.|..-+ + ..-..=...++.++....
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~- 155 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPN- 155 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChh-
Confidence 355666677778888777544555555667776666654221 1 112223445566666554
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 256 (431)
-.+.+.+.+++..+..+....+. .....-++.++-...+...+ ..|.+.|.++ +..+|..|...|+.+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~-s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSG-SESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 44667777899988888877532 22222245555333333332 3366777778 8899999998888765
Q ss_pred c
Q 014088 257 A 257 (431)
Q Consensus 257 ~ 257 (431)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 385
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.08 E-value=1.4e+02 Score=24.15 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH-Hhcccc-hhhHHHHHHHHHHHhhcC
Q 014088 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNY-KKSIKKEACWTISNITAG 258 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~~~ 258 (431)
+++..+.+.+.+.+.++++.+...+++++..+........+.-++ -.++.+.. ++.++. ...-|..++.++..++..
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 555577788888887777888899999999988543322222222 23444444 555442 245777889999999875
No 386
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.74 E-value=83 Score=35.44 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=74.5
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
+.+.|..+.++.++.-+......+-..... ..+..++..|+..+-+++..-...|+.+|..++...+.. ...-+
T Consensus 439 la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~--l~~fa 512 (1426)
T PF14631_consen 439 LAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSE--LQPFA 512 (1426)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH--HHHTH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHH--HHHHH
Confidence 555667788888888887777666554332 222346788888876666655678999999998654432 11112
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 161 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 161 (431)
..+..++..+ .+-+..-.+....+|+.++.............+--.+-+.|.+.+...+.
T Consensus 513 ~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 513 TFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 2344444444 34445556667888888875542221122233333455667777666543
No 387
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.61 E-value=3.5e+02 Score=28.52 Aligned_cols=143 Identities=14% Similarity=0.141 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHH
Q 014088 158 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL 232 (431)
Q Consensus 158 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 232 (431)
...+.++..+..++.+....-. ..++.+++...+ .+++....+...++.++..-.+. ...-...++.|
T Consensus 482 ~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~--P~~ln~sl~~L 554 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH--PMYLNPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC--CcccCchHHHH
Confidence 3455566666666655433222 345666666432 36777777877777776432211 11223568888
Q ss_pred HHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCH-HHHHHH
Q 014088 233 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFL 309 (431)
Q Consensus 233 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l 309 (431)
++-|..+ +.-.++...+..+|+..++......+ +++..+-..+... .+..+......++.+...-.+ +..+++
T Consensus 555 ~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl 630 (982)
T KOG2022|consen 555 FQGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYL 630 (982)
T ss_pred HHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHH
Confidence 8888655 44556666788888876666655554 3566666666554 567778888888888765443 344444
Q ss_pred HH
Q 014088 310 VS 311 (431)
Q Consensus 310 ~~ 311 (431)
..
T Consensus 631 ~~ 632 (982)
T KOG2022|consen 631 MK 632 (982)
T ss_pred HH
Confidence 43
No 388
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=48.32 E-value=45 Score=26.50 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
+..|+..|+.|.-.- -+.+|++++++++..+...+..+|.+.+-.
T Consensus 80 ~~~Av~LLGtM~GGY------------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY------------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHHHTTS-SST------------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHhhccCCC------------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 456777777765433 288899999888889999999988876644
No 389
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.75 E-value=28 Score=25.85 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHH
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 288 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 288 (431)
......+..++.. |+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4455666777665 78888899999999999999998776643
No 390
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.45 E-value=65 Score=22.84 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=43.9
Q ss_pred hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc----cCCHhHHHHHHHHHH
Q 014088 225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL----NAEFEIKKEAAWAIS 295 (431)
Q Consensus 225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~a~~aL~ 295 (431)
+..++.++..++.+..+.++|...+.++.++..... .-+.+| .+.++.++. +++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345678888887666588999999999999976423 233444 555665554 335666666666553
No 391
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=47.34 E-value=3.5e+02 Score=28.07 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=44.0
Q ss_pred CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 197 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.++++...++.+++.++.--+ ..-+.+...++.|.+++. -+++|.+||.++..+..
T Consensus 205 ~npgl~~~cLdc~g~fVSWId--InLIaNd~f~nLLy~fl~---ieelR~aac~cilaiVs 260 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWID--INLIANDYFLNLLYKFLN---IEELRIAACNCILAIVS 260 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhh--hhhhhchhHHHHHHHHHh---HHHHHHHHHHHHHHHHh
Confidence 378899999999998876533 334557778899999987 46889999999888775
No 392
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=46.91 E-value=2.8e+02 Score=26.89 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhhHhhhHH-HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 014088 116 LSMLRNATWTLSNFCRGKPQPLFEQTRPALP-ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 194 (431)
Q Consensus 116 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~-~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 194 (431)
...|..++.+|+.++..-+.... ..... .|...|++....-|..+..++...+...........-..+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~---~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSL---QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 45677888999999887432222 22332 688888888777777777777766644321111000113446677777
Q ss_pred CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH-----HHHHHhcccc----h----hhHHHHHHHHHHHhhc---C
Q 014088 195 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP-----CLLDLLTQNY----K----KSIKKEACWTISNITA---G 258 (431)
Q Consensus 195 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~-----~L~~lL~~~~----~----~~v~~~a~~~L~nl~~---~ 258 (431)
..+.+..-......+..+-.........+.+.|.++ .|-...+... + +....-+-.....+.. .
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 765555555555555555443344444444555522 2221111110 0 1111111111112221 1
Q ss_pred CHHH--HHHHHH-hCCHHHHHHHHc----cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHH
Q 014088 259 NVNQ--IQAIIE-AGIIGPLVNLLL----NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIV 330 (431)
Q Consensus 259 ~~~~--~~~l~~-~~~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~ 330 (431)
.... .+.+-+ ..-+...+..++ .-+..|+..++.++..+-.-. +.. +-+|..|++-++. ++..++
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP--~KL-----nPiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLP--KKL-----NPIIRPLMDSIKREENELLQ 330 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCc-----cHHHHHHHHHhhccccHHHH
Confidence 1111 111111 011222222222 124556666666666654322 111 2357788887764 577899
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 014088 331 TVCLEGLENILKAGEAEK 348 (431)
Q Consensus 331 ~~al~~L~~l~~~~~~~~ 348 (431)
..+..+|..++..+...+
T Consensus 331 ~rsA~slA~Li~~~~~rk 348 (441)
T PF12054_consen 331 QRSAESLARLIQLCVDRK 348 (441)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999998877443
No 393
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=46.57 E-value=5.4e+02 Score=30.14 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhC---CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHH
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDH---GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRD 95 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 95 (431)
..-..-++.+..++..++..|..+.+. ..++.|..++.. -...++..+..+|+.++...++.+.
T Consensus 579 ~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~~~~ 646 (1691)
T PF11894_consen 579 EMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPEIAN 646 (1691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344566677888888888888888875 369999999987 4578888899999999644444333
No 394
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=46.36 E-value=1.2e+02 Score=22.60 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 014088 114 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 193 (431)
Q Consensus 114 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 193 (431)
+.+.+.....|++.+... ...++..+.+.+....++-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 456666677777777532 24566677777777777777788888887877654443334443445555555
Q ss_pred cCCCCcccHHHHHHHHhHh
Q 014088 194 LRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 194 l~~~~~~v~~~a~~~l~~l 212 (431)
....+++++....+.+..+
T Consensus 88 ~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 88 YEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHhCCHHHHHHHHHHHHHc
Confidence 5566667776666665544
No 395
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=45.85 E-value=3.6e+02 Score=27.92 Aligned_cols=60 Identities=7% Similarity=0.078 Sum_probs=44.4
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
..-+|.+...++.|++...+ --....+++.-.++.|.+++. .+++|..|+.|+..+....
T Consensus 203 n~~npgl~~~cLdc~g~fVS--WIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 203 NIVNPGLINSCLDCIGSFVS--WIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKK 262 (980)
T ss_pred ccCCchHHHHHHHHHHHHhh--hhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC
Confidence 34367888888888888765 233445666678888888886 6789999999999887543
No 396
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=45.38 E-value=91 Score=25.49 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh
Q 014088 157 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 236 (431)
Q Consensus 157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 236 (431)
-++|+.|..++..+......... +. .++..+..-|.+ +.+++..+...+.+++...+.....-++ .+++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 47899999999988655433322 11 345666666766 8899999999999999877755443333 5677777777
Q ss_pred c
Q 014088 237 T 237 (431)
Q Consensus 237 ~ 237 (431)
.
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 3
No 397
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=44.16 E-value=2.6e+02 Score=25.69 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cC---CCCcccHHH-HHHHHhHhh----cCChhhhHHHhhcCCh
Q 014088 159 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LR---HPSPSVLIP-ALRTVGNIV----TGDDMQTQCIINHQAL 229 (431)
Q Consensus 159 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~---~~~~~v~~~-a~~~l~~l~----~~~~~~~~~~~~~~~l 229 (431)
+++..+..+.......++. + .+...+++.++.. |. ...+..|.. .+.+++.++ .........+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-E-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-H-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-H-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 4555666665555444322 2 2333566666653 32 233333332 333333333 322233333443 456
Q ss_pred HHHHHHhcccc--hhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC---
Q 014088 230 PCLLDLLTQNY--KKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--- 301 (431)
Q Consensus 230 ~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--- 301 (431)
...+.++..+. -|+.|..-...|.++...+....-.+=. .-++..++.-+++.+.++...++.++..+..+.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 66677775432 4788888888888777643322211111 124556777778889999999999998887643
Q ss_pred CHHHHHHHHHCCChHHHHhh---c-CCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 302 SNEQIKFLVSQGCIKPLCDL---L-NCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 302 ~~~~~~~l~~~~~l~~L~~l---l-~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.++....+.+.-.++.+... + ...+...-..-..+|.+++...+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 23555555554444444333 3 233444444445677777765443
No 398
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.08 E-value=1.1e+02 Score=32.28 Aligned_cols=95 Identities=18% Similarity=0.111 Sum_probs=66.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHH----hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSY----LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~----l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
..++.....+|.+.+..+|..++.++.. |+..++.....+. ..-+.++..+...++-+...|+.++.+++....
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh--q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH--QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH--hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 4555566678888899999999988864 3344443434332 467889999999999999999999999998766
Q ss_pred hhhHHHhhcCChHHHHHHhcc
Q 014088 218 MQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~ 238 (431)
.....=+-..++|.+-.++.+
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 544433333566666655543
No 399
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=44.08 E-value=78 Score=24.67 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=43.6
Q ss_pred hhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHH
Q 014088 143 PALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209 (431)
Q Consensus 143 ~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l 209 (431)
.++..+.+.+.... .++...++.++.......+ ...+....+++.+.+++..+ ..+..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 34555555555332 7889999999998887543 34566778999999999444 4688887765
No 400
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=43.60 E-value=86 Score=23.37 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=44.2
Q ss_pred hhhhhhhHHHHHhhhccCC---ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHH
Q 014088 11 ILISLFVDQFFFHCFFSCC---FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGN 85 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~ 85 (431)
|++..+.+ .+.+.+ +..-+..+++++..+..-. ...+. .+.|.++..|++ ..++++..++.++..
T Consensus 11 Gil~~f~~-----~l~d~~g~~~~~ek~~~i~ai~~lI~~~---g~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 11 GILAVFSN-----ILHDSSGKKPYNEKKRALRSIGFLIKLM---GKHIS--SALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHH-----HHcCcccCCCHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 45555555 444333 3466888999888876521 12222 456777777776 678899999988888
Q ss_pred hcC
Q 014088 86 VAG 88 (431)
Q Consensus 86 l~~ 88 (431)
+..
T Consensus 81 ~i~ 83 (107)
T smart00802 81 LIK 83 (107)
T ss_pred HHH
Confidence 764
No 401
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=42.88 E-value=1.2e+02 Score=24.73 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 194 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 194 (431)
--++|..|..++..+....... .....++..+..-|.+ +.+++.-+...+.+++...+.....-.+ .+++.+-..+
T Consensus 40 GLelRK~ayE~lytlLd~~~~~--~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSR--IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSS--S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 4689999999999997754222 2245567888888887 9999999999999999887754332222 5566665555
Q ss_pred C
Q 014088 195 R 195 (431)
Q Consensus 195 ~ 195 (431)
.
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 3
No 402
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.66 E-value=4.4e+02 Score=27.93 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=90.3
Q ss_pred hhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccC-----Ch-HHHHHHHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHh
Q 014088 142 RPALPALERLIHSN-DDEVLTDACWALSYLSDG-----TN-DKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNI 212 (431)
Q Consensus 142 ~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~-----~~-~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l 212 (431)
...++.++.++... +++++..|-..|..+++. .+ .....+...+.+..|+..+-.+. .......+..+-.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 67999999999854 678888888888877755 33 34555666677788777664422 22222222222222
Q ss_pred hcCChhhhHHHhhcC-ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC---CHHHHHHHHccCCHhHHH
Q 014088 213 VTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKK 288 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~ 288 (431)
. ++ .+. .+... ....+.+-.... +..+....+.++..- -.+..+.+.+.. .++.-...+..+=...|.
T Consensus 269 l--~~-~r~-~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~---L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 269 L--NP-RRD-TVETNSTTTILSQPPSER-DPIVLNELLGAMEPR---LGDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred c--Cc-ccc-cccccceeeeecCCcccc-CccchHHHHHHHHHH---HHHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 2 11 111 11100 011122222222 333444433333221 122222222211 111112222222235677
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 289 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 289 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
..+..+..++........+.+...++++.+.+++..
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 888888888877776777777778888777777764
No 403
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=42.27 E-value=1.1e+02 Score=34.55 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=72.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
.+.++.++..+......+..... ......++..|+..+-+++..-...|+.+|..++...+.....+ ...+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 56788888888888888777641 22345688888888877776666789999999997655433211 23444455
Q ss_pred HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHH
Q 014088 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246 (431)
Q Consensus 192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 246 (431)
..+..-+..-.+....+++.++....... ..+...+.-.+-+.|.++ +...++
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~-s~i~del~ivIRKQLss~-~~~~K~ 572 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSS-SSIQDELHIVIRKQLSSS-NPKYKR 572 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHhhcCC-cHHHHH
Confidence 55555455556666778877775322111 112222333344455555 555544
No 404
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.13 E-value=1.4e+02 Score=27.58 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHhCC--ChHHHHHhhCC---CCHHHHHHHHHHHHHhcCCChHHHH
Q 014088 34 QFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRD 95 (431)
Q Consensus 34 ~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~ 95 (431)
|..|+.++..+. .+......+...+ ++..|+++++. -...++..|+.+|..++.+.....+
T Consensus 239 RllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 239 RLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 334444443333 3566777777776 99999999986 3478899999999999976654333
No 405
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.01 E-value=78 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
+|+.|+.-|.++++++...|+.+|...|.+. .....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999999776 3333333
No 406
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.95 E-value=58 Score=17.31 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhh
Q 014088 243 SIKKEACWTISNIT 256 (431)
Q Consensus 243 ~v~~~a~~~L~nl~ 256 (431)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57999999999983
No 407
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=40.50 E-value=2.9e+02 Score=25.23 Aligned_cols=138 Identities=12% Similarity=-0.020 Sum_probs=78.8
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
|.+.|...-..-|-..|+.+...+...-....... ..-..+.+..++......++...+..+.+..-.-+.... ..-.
T Consensus 59 LaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~-p~l~ 137 (307)
T PF04118_consen 59 LAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR-PCLK 137 (307)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH-HHHH
Confidence 44444333344555666666655555432221211 233456777788888888888888888665433332323 2223
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 253 (431)
|++..+..-+.++..++...+...+..+...-... -+...+...+.+. +..|..|...+.
T Consensus 138 ~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~s--p~~Rl~al~~l~ 197 (307)
T PF04118_consen 138 GLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIITS--PSRRLGALNYLL 197 (307)
T ss_pred HHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhcC--cchhHHHHHHHH
Confidence 67777777778788888999988888886532211 2334444444433 566776664443
No 408
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=4.3e+02 Score=27.01 Aligned_cols=212 Identities=14% Similarity=0.131 Sum_probs=120.0
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-------HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 130 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 130 (431)
.+=++.+++-+++++++++..++..+....+.+. ..-+. .. .....|.....+-.+++.++..+.+|+.|+
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKF-Lr-phy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKF-LR-PHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhh-hc-cchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 4678999999999999999999999988764321 11111 11 123334444434446788899999999888
Q ss_pred cCCCCCChh--------------hHhhhHHHHHHhh----cC--C----ChHHHHHHHHHHHHhccCCh--HHHHHHHHh
Q 014088 131 RGKPQPLFE--------------QTRPALPALERLI----HS--N----DDEVLTDACWALSYLSDGTN--DKIQAVIEA 184 (431)
Q Consensus 131 ~~~~~~~~~--------------~~~~~i~~L~~lL----~~--~----~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~ 184 (431)
-........ .-...+..|..-+ ++ . ..+.+.-+..++.....++. +.+..+++-
T Consensus 125 mt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Ev 204 (878)
T KOG2005|consen 125 MTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEV 204 (878)
T ss_pred eeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Confidence 643111110 0012233332222 11 1 13445555555554444432 345666776
Q ss_pred CcHHHHHHhcCCC-----------------Ccc---cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhH
Q 014088 185 GVCPRLVELLRHP-----------------SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 244 (431)
Q Consensus 185 ~~i~~L~~ll~~~-----------------~~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 244 (431)
+.++.+....... .|+ +.+.+..+...+..... .....+..+-.+.+.+.+.+..++..
T Consensus 205 e~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~-al~~ai~l~~~~~v~~vf~s~~D~~~ 283 (878)
T KOG2005|consen 205 EGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR-ALVGAIRLDDMKEVKEVFTSCTDPLL 283 (878)
T ss_pred hhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH-HHHHHHhcCcHHHHHHHHHhccCHHH
Confidence 7777777665432 222 44555555555544333 23334444566777777777668889
Q ss_pred HHHHHHHHHHhhc---CC-HHHHHHHHHhCCH
Q 014088 245 KKEACWTISNITA---GN-VNQIQAIIEAGII 272 (431)
Q Consensus 245 ~~~a~~~L~nl~~---~~-~~~~~~l~~~~~i 272 (431)
+++.++.|++--. .+ .+..+.++.++-+
T Consensus 284 kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~L 315 (878)
T KOG2005|consen 284 KKQMAYMLARHGIYFELSEDEELQDILSNGKL 315 (878)
T ss_pred HHHHHHHHHhcCCceecCcCHHHHHHHccccH
Confidence 9999999986543 11 2445566554433
No 409
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=39.78 E-value=93 Score=26.33 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=45.1
Q ss_pred HhHHHHHhCCChHHHHHhhCC---CC---------------HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc
Q 014088 50 ENTRVVIDHGAVPIFVRLLSS---PT---------------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 111 (431)
Q Consensus 50 ~~~~~~~~~g~i~~L~~lL~~---~~---------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~ 111 (431)
...+.+.+.|++..++.+|+. .. ..+...|...|..++.++..++..+.+ .++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHH
Confidence 445566778888888888864 11 356778888999999888877776655 2333333331
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 154 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~ 154 (431)
... ...--.+..++..+..+++..........+..++.++..
T Consensus 112 ~~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp CCC-H-TTHHHHHHHHHHHTT----------------------
T ss_pred Hhh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 111 011123455666666665433333334446666666654
No 410
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=39.34 E-value=24 Score=18.56 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc
Q 014088 118 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 153 (431)
Q Consensus 118 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~ 153 (431)
+|..++++|+.+... ..+|.|.+.|+
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 467788888877652 56666666554
No 411
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.85 E-value=1.7e+02 Score=22.11 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=40.8
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
.+.+.|..+..++.|..+...++.++...+=.. .+++ .++..+++....... ...++.+|..++...
T Consensus 10 ~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 10 FLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 555577767778999999999999987433222 2211 233333333332222 577888888888433
No 412
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=38.65 E-value=4.2e+02 Score=26.62 Aligned_cols=100 Identities=8% Similarity=-0.044 Sum_probs=66.8
Q ss_pred cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh--HHHhhcCChH
Q 014088 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALP 230 (431)
Q Consensus 153 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~l~ 230 (431)
.+-++.+|..+...++--...-|+. +....++...-..|.+.+..++.....++..++...+..- ...++ ..-.
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e-RFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE-RFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH-HHHH
Confidence 3456777777777777655554433 3333456666667788888999999999999998765322 12222 4556
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 231 CLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.+++++..+ ..-||..+..++..+..
T Consensus 361 rILE~~r~D-~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 361 RILEFLRTD-SDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHhhc-cchhhHHHHHHHHHHHH
Confidence 778888777 44488888877776654
No 413
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.35 E-value=1.8e+02 Score=21.94 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=62.3
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 350 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 350 (431)
+++.|+.-|.+++.+|...|+.+|...+... .....+.... +.+ ..+ ....--.+.+++.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~~~--p~l-~~L-------~~~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVSLR--PSL-DHL-------GDIGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHHcC--cHH-HHH-------HHcCHHHHHHHHcchHH----
Confidence 4778899999999999999999999998754 4444444321 111 111 12222344444443332
Q ss_pred CCCCCcchHHHHHHhhccHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 351 GNTGGVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
...+.+.|.++. +....+..|.+--..+...+..-+..
T Consensus 73 ---------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 73 ---------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred ---------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Confidence 234555565555 55557888887777777777665543
No 414
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.04 E-value=6.8e+02 Score=28.53 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=73.5
Q ss_pred HhhcCChHHHHHHhcccchhh---HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHh
Q 014088 223 IINHQALPCLLDLLTQNYKKS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNA 297 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~~~~~---v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l 297 (431)
.++...+|.+-+.+.+. ..+ .|......+...... +...+.+...+....++....++ +..-+.-.+.+|++-
T Consensus 1536 ~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks-~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~ 1613 (1758)
T KOG1791|consen 1536 IVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKS-CPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKG 1613 (1758)
T ss_pred hcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcC-chhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhc
Confidence 44666777777777655 333 344444444444444 44567777778888888888876 566666777777777
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHH-HHHHHHHHHHh
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTV-CLEGLENILKA 343 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~-al~~L~~l~~~ 343 (431)
+.... .....+-..|+...+..++.+. .+..... ....+..+...
T Consensus 1614 Vk~p~-~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1614 VKFPF-YAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred CCCcH-HHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 66432 3334445678889999999865 3333433 44555555544
No 415
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=36.34 E-value=3.2e+02 Score=25.82 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=55.9
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-----CCCcccHHHHHHHHhH-hhcC
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGN-IVTG 215 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~l~~-l~~~ 215 (431)
...+..+..++.+.+++.|...+.++.|-.+.+......+ ...+..+.. ..+..+++...++|.. +...
T Consensus 261 s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~F-----s~~lL~lF~~~~~~~~~~~IqEqItRVLLERliv~ 335 (379)
T PF04054_consen 261 SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFF-----SCVLLNLFSSDMNDPNDEDIQEQITRVLLERLIVN 335 (379)
T ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHH-----HHHHHHHhcCCCCccchhhhHHHHHHHHHHHHhcC
Confidence 3566677778888888899988888888888776554422 244555555 3456677777776643 2222
Q ss_pred ChhhhHHHhhcCChHHHHHHhccc
Q 014088 216 DDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
.+ +-. |++-.++++++++
T Consensus 336 rP-HPW-----GllitfiELikN~ 353 (379)
T PF04054_consen 336 RP-HPW-----GLLITFIELIKNP 353 (379)
T ss_pred CC-CCc-----cHHHHHHHHHhCc
Confidence 11 222 6777788888765
No 416
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.28 E-value=2e+02 Score=30.23 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh
Q 014088 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 236 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 236 (431)
.+.++.+|.-+..... ....+.+.|.=..++-+. +.++..+.-.+++.|..|+.++. ....++..+++..|+.+=
T Consensus 326 ~~~~~q~l~~lgey~e-~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vp 403 (1516)
T KOG1832|consen 326 EKYCIQCLEILGEYVE-VLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVP 403 (1516)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCC
Confidence 3445555555543322 224455544422222222 33556677778888988888765 445567777777766655
Q ss_pred cccchhhHHHHHHHHHHHhhcCCHHHHH--HHHHhCCHHHHHHHHccCCHhHHHHHHHH
Q 014088 237 TQNYKKSIKKEACWTISNITAGNVNQIQ--AIIEAGIIGPLVNLLLNAEFEIKKEAAWA 293 (431)
Q Consensus 237 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 293 (431)
.-+....=...++++|+.+-......+. ..+-+.++..-+.++......-+.++...
T Consensus 404 r~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~f 462 (1516)
T KOG1832|consen 404 RVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALF 462 (1516)
T ss_pred CchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHH
Confidence 4331122233444555443211000000 11123356666777777655555444333
No 417
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=36.26 E-value=24 Score=33.93 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=44.6
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 232 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
+-.+.-+. +++++.+|..++++++......+..+....+-..+++++..+.+++-+.+..++..+..
T Consensus 333 lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 333 LKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33333445 89999999999999998633322222233344567777777777777777777776654
No 418
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.43 E-value=3e+02 Score=24.90 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC------ChHHHHHHHHHHHHhccCChH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN------DDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~ 176 (431)
...+++.|....+.+++..|+.+|.+=+.- ..++|.++.++... +-+.....+.....+..+..-
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~dsGl---------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~i 269 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRNDSGL---------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYI 269 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccH---------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCce
Q ss_pred HHHHHHHhCcHHHHHHhc-----CCCCcc-----cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHH
Q 014088 177 KIQAVIEAGVCPRLVELL-----RHPSPS-----VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll-----~~~~~~-----v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 246 (431)
.....+. .++|.++.++ .+...+ +|.-|+..+...+...+.....+.-.-.-..+-.+|........+.
T Consensus 270 FvdPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~Y 348 (450)
T COG5095 270 FVDPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQY 348 (450)
T ss_pred eecHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhh
Q ss_pred HHHHHHHHhhcC
Q 014088 247 EACWTISNITAG 258 (431)
Q Consensus 247 ~a~~~L~nl~~~ 258 (431)
.|+..++-+...
T Consensus 349 Galkgls~l~ke 360 (450)
T COG5095 349 GALKGLSILSKE 360 (450)
T ss_pred hhhhhhhhhchh
No 419
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=34.77 E-value=2.5e+02 Score=22.80 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=52.8
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088 99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 174 (431)
..+.+...+..+....|..+....+.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...-
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3445556666665666777777777776654443 22344455789999999999999998999998888776543
No 420
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=33.93 E-value=4.1e+02 Score=25.10 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-----hhhHHHhhcCChHH
Q 014088 157 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-----MQTQCIINHQALPC 231 (431)
Q Consensus 157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-----~~~~~~~~~~~l~~ 231 (431)
..-+.-|...+.+...+-+.... ..+..-+.+..+.+..+|+.|++-|-.+|.+.. .....+++..-+..
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHH
Confidence 33444555555555555443322 344555566677777888888888877776521 01111222233333
Q ss_pred HHHHhcccchhhHHHHHHHHHHH-hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC---CCHHHHH
Q 014088 232 LLDLLTQNYKKSIKKEACWTISN-ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG---GSNEQIK 307 (431)
Q Consensus 232 L~~lL~~~~~~~v~~~a~~~L~n-l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~---~~~~~~~ 307 (431)
|....... +..+|..+...|.. +..-..+....-++..++..+...|.+-+-+--...+..|+++-.. .++...+
T Consensus 113 Lf~~~~~~-D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lq 191 (460)
T KOG2213|consen 113 LFGQIEVG-DEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQ 191 (460)
T ss_pred HHhhhhhh-hHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHH
Confidence 33333445 67778777766653 3333345555555555666666666665444333445555555432 2444555
Q ss_pred HHHHCCChHHHHhh--cCCCCHHHHHHHHHHHHH
Q 014088 308 FLVSQGCIKPLCDL--LNCPDPRIVTVCLEGLEN 339 (431)
Q Consensus 308 ~l~~~~~l~~L~~l--l~~~~~~v~~~al~~L~~ 339 (431)
.+.+ ..+.+-++ +...|++....-+.++..
T Consensus 192 eLa~--~~e~~a~ldaf~~sD~d~VdRfisCl~~ 223 (460)
T KOG2213|consen 192 ELAE--EQEGLADLDAFNVSDADYVDRFISCLLM 223 (460)
T ss_pred HHHH--HHhhhhccCcccCCChHHHHHHHHHHHH
Confidence 5443 12222222 444566655555555443
No 421
>PLN03205 ATR interacting protein; Provisional
Probab=33.89 E-value=4.2e+02 Score=25.11 Aligned_cols=160 Identities=15% Similarity=0.187 Sum_probs=91.6
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChHHHHHHHHhC---cHHHHHHh-cCCCCcccHHHHHHHHhHhhc
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAG---VCPRLVEL-LRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~---~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~ 214 (431)
..++..|+.+-.-++..+...+++.|..+..+ +..+.+.--+.+ +++.+.+. ..+....|+..|+.++..+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 45566666666666666777777766654422 112212111112 22223333 234567788888888877765
Q ss_pred CCh--hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH---------------------H---
Q 014088 215 GDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---------------------E--- 268 (431)
Q Consensus 215 ~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~--- 268 (431)
... ..++.+....+++.+.++|+......|+++|+-.+--|.-. |.....+. .
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHHHH
Confidence 543 33445556688999999998776778888887544322211 11111111 0
Q ss_pred hCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCC
Q 014088 269 AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 269 ~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~ 302 (431)
..++.-|-+.+... +.++++.++..|..++..+.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11344555555443 57888999999999887663
No 422
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.72 E-value=5.8e+02 Score=26.71 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=68.6
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 350 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 350 (431)
+...+...+..++...-...+.++.++..-......+ ...-.+.-..-.+..-..+......+|.++......
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~---- 514 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS---- 514 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----
Confidence 3445666666667777777777777775432100000 011111111111111123444455556655554322
Q ss_pred CCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088 351 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
.....+.+.+....+..+.-|+++++++.|.+++...|+.+
T Consensus 515 -------~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 515 -------HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred -------HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 26788888899999999999999999999999999999744
No 423
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=33.68 E-value=3.2e+02 Score=23.67 Aligned_cols=130 Identities=10% Similarity=0.135 Sum_probs=78.5
Q ss_pred ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc--c---------------hhhHHHHHHHHHHHhhcCCHHH
Q 014088 200 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--Y---------------KKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~---------------~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
......+..+..+....+ ....+...++++.+.+.|..- . ...+-..-...||.++.. +..
T Consensus 79 ~y~~vGc~L~~~Ll~~~e-G~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~G 156 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPE-GIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PNG 156 (226)
T ss_pred HHHHHHHHHHHHHHcCcH-HHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hhH
Confidence 344556666666666533 344455667777777766322 0 122223344567777665 677
Q ss_pred HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
.+.+-+.+++..+..+....+. -.-....+.++=... ....+.+. ...+...+..++..|..-|..+++
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~-~~~~R~iL--------sKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV-DGHPRIIL--------SKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC-ccHHHHHH--------HHHHhcCCHHHHHHHHHHHHHHhc
Confidence 7788888999999999887633 222233455553322 22333322 357778888999999988887654
No 424
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=33.30 E-value=88 Score=26.45 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=77.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-ChHHHHHHHH-HHHHhccCChHHHHHHHHhCcHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACW-ALSYLSDGTNDKIQAVIEAGVCPR 189 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~ 189 (431)
.+...+.+..|+.++...... .....++.+-..+..- +..+....+. ++..+.... ....+.
T Consensus 61 ~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~ 124 (213)
T PF08713_consen 61 ESGYREERYLALLILDKRRKK-------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALEL 124 (213)
T ss_dssp CSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHH
T ss_pred CCchHHHHHHHHHHhHHHhhh-------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHH
Confidence 555566666666666543321 1112455555555533 4555444422 233222111 245567
Q ss_pred HHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088 190 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269 (431)
Q Consensus 190 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 269 (431)
+...+.++++-+++.++-++....... ... ..+..+...+.++ +..++....|+|..++..+++.....++.
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 777888888777777766665554431 111 2345555666777 89999999999999999888877666654
No 425
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.89 E-value=5.9e+02 Score=26.56 Aligned_cols=102 Identities=15% Similarity=0.243 Sum_probs=69.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
.|+.|..+-..+-+.++..++.++..+....|+.-.. .+..+++.| .+++..+...|...|.+|....|.....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4556666666677899999999999998777764332 456788888 6778889999999999998887776655
Q ss_pred hHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhc
Q 014088 140 QTRPALPALERLIHSN--DDEVLTDACWALSYLS 171 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~ 171 (431)
.... +..++-.+ +.....+++..|..+.
T Consensus 379 vi~E----Ier~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VIDE----IERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHHH----HHHHHcccCccccceeehhhhhhhhH
Confidence 4433 33333322 3444555666665543
No 426
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.46 E-value=7e+02 Score=27.33 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=41.4
Q ss_pred ChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHH
Q 014088 60 AVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 125 (431)
Q Consensus 60 ~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 125 (431)
++..|-. +|+..+..++...+..+..|....+++....-+...++.++.-+... ...++...+.+
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegf-PsslqvkiLki 532 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGF-PSSLQVKILKI 532 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCC-ChHHHHHHHHH
Confidence 3444444 56778888888888888888877777666666666677777766333 23344444333
No 427
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=6.4e+02 Score=26.66 Aligned_cols=174 Identities=15% Similarity=0.050 Sum_probs=82.5
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHH
Q 014088 67 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 146 (431)
Q Consensus 67 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 146 (431)
.|+++....+-.+...+.++-...|.. .+. ....-.|.... ...+...|-..+++... .+.+.........++.
T Consensus 32 Glr~~~t~eqpeavvr~~RLFek~Pfp--ifi-Ns~llrLaDaF-~~Gn~llRf~V~rv~~q--~g~hln~v~n~aE~lr 105 (970)
T KOG1988|consen 32 GLRSGKTSEQPEAVVRFPRLFEKYPFP--IFI-NSQLLRLADAF-PVGNNLLRFAVLRVDQQ--SGKHLNKVLNGAEFLR 105 (970)
T ss_pred cccccccccchHHHHHHHHHHhhCCch--hhh-hHHHHHHHHHh-ccCcHHHHHHHHHHHhh--ccccchhhhhhhhhhh
Confidence 344444444445555566665444421 111 11122233333 33345555555544441 1112222233345555
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088 147 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 225 (431)
Q Consensus 147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 225 (431)
.+.....++|+.-+..++..++.++.--++. .-...++.. +.+.+.--.+.++.+..+.+......... +
T Consensus 106 ri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~s-i- 176 (970)
T KOG1988|consen 106 RIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFACS-I- 176 (970)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHHH-H-
Confidence 5556666889999999999998877544433 223444433 44443333445556666665433322111 1
Q ss_pred cCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 226 HQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 226 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.+-+...++.+.-+ ...+..++.+++.+..
T Consensus 177 ~gkis~mIef~d~~--~~mkL~li~Vfs~M~c 206 (970)
T KOG1988|consen 177 CGKISDMIEFLDLP--VPMKLSLIPVFSHMHC 206 (970)
T ss_pred HHHHHHHhhcccCC--CCcchhHhHHHHHhcc
Confidence 12223333333222 4556666667776655
No 428
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.42 E-value=1.6e+02 Score=22.02 Aligned_cols=70 Identities=4% Similarity=0.036 Sum_probs=42.8
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.++..+.+.+... .+.-+..+++.+-.++..............+.+.+.......++.++......+.-.
T Consensus 37 ~iv~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 37 EIVEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3455666777666 667788888888888764333233333433466666666666777776655555433
No 429
>PF07626 PSD3: Protein of unknown function (DUF1587); InterPro: IPR013036 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=31.34 E-value=90 Score=20.92 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 014088 386 KAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPS 425 (431)
Q Consensus 386 ~a~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (431)
.....+..++.-+.+-....|.|....||+-.++.+.+.+
T Consensus 7 EY~nTvrDLlg~~~~~~~~lP~D~~~~GFdn~~~~l~~s~ 46 (67)
T PF07626_consen 7 EYQNTVRDLLGVDVDPADGLPADPGSEGFDNNGEALSVSP 46 (67)
T ss_pred HHHHHHHHHhCCCCchhccCCCCCCcCCCCCcccccccCH
Confidence 4455666777777444433344488888998888887754
No 430
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.94 E-value=2.3e+02 Score=21.34 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=45.2
Q ss_pred HhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCccc-HHHHHHHHhHhhcC
Q 014088 141 TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV-LIPALRTVGNIVTG 215 (431)
Q Consensus 141 ~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v-~~~a~~~l~~l~~~ 215 (431)
...++|.+.+.+. +..++.+..+...++.++...+-.. .++..++..+ .+..... ...++.++..++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 3467889999999 7788999999999999987654221 2233333332 2322222 47788888888754
No 431
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=30.80 E-value=16 Score=26.10 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=0.8
Q ss_pred CCCCCCCCCC
Q 014088 418 GNGLPVPSGG 427 (431)
Q Consensus 418 ~~~~~~~~~~ 427 (431)
++++|+|+=|
T Consensus 38 ~de~p~p~fg 47 (101)
T PF09026_consen 38 EDEVPVPEFG 47 (101)
T ss_dssp --------HH
T ss_pred cccccchhHH
Confidence 5688999743
No 432
>PRK09169 hypothetical protein; Validated
Probab=30.54 E-value=1e+03 Score=28.62 Aligned_cols=64 Identities=14% Similarity=-0.039 Sum_probs=27.9
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhcC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~ 88 (431)
-|.+=++......+...|.......+..+..+-..+ +..++..| +-++...-+.+...|..-..
T Consensus 171 alSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~-va~~lnalSKwp~~~~cr~a~~~lA~rL~ 235 (2316)
T PRK09169 171 ALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQE-VANALNALSKWPDSPRCRNAAERLAERLA 235 (2316)
T ss_pred HhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 343334444445555555555444455544433333 33333333 33444444444444444433
No 433
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=30.28 E-value=2.7e+02 Score=21.93 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=46.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
.+-..+..+|.++++++|..|+.|+...-. +.... .-+.|.+++. +...+.... .+. +..+......
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l~p------Y~d~L~~Lld---d~~frdeL~-~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYLTP------YKDNLENLLD---DKTFRDELT-TFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHh------HHHHHHHHcC---cchHHHHHH-hhc-ccCCcCCCCH
Confidence 345667789999999999999999988632 11111 1234555552 122333222 111 2222233444
Q ss_pred hhHhhhHHHHHHhhc
Q 014088 139 EQTRPALPALERLIH 153 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~ 153 (431)
.....++|.++.+|-
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 556788888888774
No 434
>PLN03205 ATR interacting protein; Provisional
Probab=28.09 E-value=2.1e+02 Score=26.98 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHc-----cCCHhHHHHHHHHHHHhcC
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLL-----NAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~ 299 (431)
+++.|+.+..-. +..+...++++|..+.. ++......-++.+.+. |.+++. .....|+.+|+.+..-++.
T Consensus 324 LlEaLLdLC~v~-n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 324 LVEPLLDLCKAE-TAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 355666666666 66666666666655443 2222233333333322 333332 2355677777776655554
Q ss_pred CCC-HHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHH
Q 014088 300 GGS-NEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENI 340 (431)
Q Consensus 300 ~~~-~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~l 340 (431)
..+ .-.+..|.+..+++.+-++++.+ ...+++.++..|.-+
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 332 23445566667888888888743 456777776665544
No 435
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=27.47 E-value=4.8e+02 Score=23.83 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=118.4
Q ss_pred HhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088 141 TRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 141 ~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 218 (431)
...+-..|.++|+.. ...|...|+.+...+.+.-... ....+.. ..+.|..++......|+...+..+.+....-+.
T Consensus 52 k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~-~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~ 130 (307)
T PF04118_consen 52 KLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD-GLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP 130 (307)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH-HHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH
Confidence 345667888888865 5678888888887776543221 1111111 245677777777788888888888877653333
Q ss_pred hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
....... +++..++.-+.++ ..+....+...+-.+... +.+ . +...+...+- .++.+|..|+..+..-
T Consensus 131 ~L~p~l~-~li~slLpGLede-~sE~~~~~~~ll~~l~~~v~~~---~-----F~~~lwl~ii-~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLK-GLILSLLPGLEDE-GSEFFDRTLKLLDKLKEAVGDK---Y-----FWQCLWLCII-TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHH-HHHHHhccccccC-CchHHHHHHHHHHHHHHhcChh---H-----HHHHHHHHHh-cCcchhHHHHHHHHHh
Confidence 3333333 6777777778877 788888888888887752 122 1 2233333332 3567777766666554
Q ss_pred cCCCC-------HHHHHHHHH--CC-ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 298 TSGGS-------NEQIKFLVS--QG-CIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 298 ~~~~~-------~~~~~~l~~--~~-~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
..... .+....+.. .+ ++..+...+++++.-+++.++..|..-+....
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s 257 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDS 257 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCC
Confidence 43221 122222221 22 36778888888888888999998887776543
No 436
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.22 E-value=3.5e+02 Score=25.25 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH-HhhcCCC--CHHHHHHHHHHHH
Q 014088 263 IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL-CDLLNCP--DPRIVTVCLEGLE 338 (431)
Q Consensus 263 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L-~~ll~~~--~~~v~~~al~~L~ 338 (431)
.+++.+++++..|+.+-... .+.+|..++.++.++.............-..-+..| ++.-... ..++...-...+.
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Q ss_pred HHHHhhhhhhhcCCCCCcchHHHHHHhhccH-------------------------HHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGL-------------------------EKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.++..-...... ..-.+...+.- ..|..+.+++ .++-.+|...+--
T Consensus 82 ~lc~~i~~~P~l--------l~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLl 152 (353)
T PF10257_consen 82 TLCSKIRKDPSL--------LNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLL 152 (353)
T ss_pred HHHHHHHhCHHH--------HHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHH
Q ss_pred hcCCCCCCCCCCCCCCCCCCc
Q 014088 394 YWVEEDEDEPLPPGDATQAGF 414 (431)
Q Consensus 394 ~~~~e~~~~~~~~~~~~~~~~ 414 (431)
+.+-..+++....-.+.+.+|
T Consensus 153 l~~l~~~~~~~~~~i~~~S~f 173 (353)
T PF10257_consen 153 LMSLASEDPALAQYIVEHSDF 173 (353)
T ss_pred HHhCCCCCcHHHHHHHHcchh
No 437
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=26.77 E-value=5.5e+02 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=15.9
Q ss_pred hhhHHHHHHhhc--CCChHHHHHHHHHHHHhccC
Q 014088 142 RPALPALERLIH--SNDDEVLTDACWALSYLSDG 173 (431)
Q Consensus 142 ~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~ 173 (431)
.-+.|.+++++- ++.+.++..+...+..+...
T Consensus 255 ~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~ 288 (373)
T PF14911_consen 255 RLVLPSLLECLMLVNEEPQVKKLATELLQYMVES 288 (373)
T ss_pred HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHc
Confidence 444454444432 22455666666666555543
No 438
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=25.02 E-value=1.3e+02 Score=18.20 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=22.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 366 AEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 366 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
.++-+.|..++...+++.+..|..+|..
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3456667777888899999999998875
No 439
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=24.61 E-value=3.4e+02 Score=27.25 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=46.6
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
++-.+..++...+...++-..+..++.+.. ..++..+.-+-..+....-.+|.+.++-+...|+.+++.++...+
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 445556666555466788888888888876 112222211111122333345577799999999999999988653
No 440
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=24.32 E-value=1e+03 Score=26.49 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=44.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc------------cccchhHHHHHHHHH
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------------EHAKLSMLRNATWTL 126 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~------------~~~~~~~~~~a~~~L 126 (431)
.+...++.+|++.+..++..+..+|+.+-. ...+.+++ .+..++.-.. +.....+|....+++
T Consensus 196 ~LFk~ivPlLks~~~~~r~AaVlaLG~~n~---~v~~~Lle--eL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl 270 (1120)
T PF14228_consen 196 ELFKLIVPLLKSESSSFRDAAVLALGSINL---NVYRTLLE--ELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVL 270 (1120)
T ss_pred HHHHHHhhhhccCcHHHHHHHHHhcCCCCH---HHHHHHHH--HHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHH
Confidence 467788889999999999999888888632 22233322 2222222210 112456888888888
Q ss_pred HHhhcCC
Q 014088 127 SNFCRGK 133 (431)
Q Consensus 127 ~~l~~~~ 133 (431)
..++..-
T Consensus 271 ~llAe~l 277 (1120)
T PF14228_consen 271 RLLAEFL 277 (1120)
T ss_pred HHHHhhc
Confidence 8877764
No 441
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=24.28 E-value=2e+02 Score=26.07 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=31.4
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
..+|.+...-..+..|..|++++|+..|..++..|-.
T Consensus 37 ~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~ 73 (299)
T TIGR01385 37 EELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKK 73 (299)
T ss_pred HHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5677778877888899899999999999999987654
No 442
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=24.26 E-value=1.1e+02 Score=27.57 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=42.5
Q ss_pred hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC------C-------HHHHHHHHHCCChHHHHhhcC
Q 014088 269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG------S-------NEQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 269 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~------~-------~~~~~~l~~~~~l~~L~~ll~ 323 (431)
...+..+++-|...+...|..|+.+|.-++.+. . ..+...+.+.|+++.+.++++
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 446777888888889899999999999998754 1 234456677899999988875
No 443
>PF15573 Imm27: Immunity protein 27
Probab=23.85 E-value=2.5e+02 Score=24.00 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088 62 PIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140 (431)
Q Consensus 62 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 140 (431)
+.|++++++ .+..+...|++.++.+|.+. .+.+.+-+..|.+.- ...+-..+..+...|+-.
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THd-----DL~~~nNl~FLs~as----E~~v~TF~s~A~~tlSye-------- 111 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHD-----DLRDSNNLRFLSSAS----EFGVFTFASGAITTLSYE-------- 111 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchH-----hhhcccceehHhhhh----HHHHHHHHHHhhccchhh--------
Q ss_pred HhhhHHHHHHhhc
Q 014088 141 TRPALPALERLIH 153 (431)
Q Consensus 141 ~~~~i~~L~~lL~ 153 (431)
++|.|+.+++
T Consensus 112 ---VIPYLLaLle 121 (259)
T PF15573_consen 112 ---VIPYLLALLE 121 (259)
T ss_pred ---HHHHHHHHHH
No 444
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.42 E-value=2.9e+02 Score=22.85 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088 188 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267 (431)
Q Consensus 188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 267 (431)
+.+.....+++.-+++.++..+...... ..... ..++.+-.++.++ +..++....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5666777888887888877777665543 11111 2344555555656 899999999999999987777655554
Q ss_pred H
Q 014088 268 E 268 (431)
Q Consensus 268 ~ 268 (431)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 445
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.40 E-value=1.2e+03 Score=26.89 Aligned_cols=220 Identities=11% Similarity=0.078 Sum_probs=112.6
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 014088 50 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 129 (431)
Q Consensus 50 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 129 (431)
+.|..+++.|....+...+++.++.+|..+.|++...-.+-.. .+. ...-....+-+..+
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~----------------l~e----k~~a~~~ll~L~~l 1489 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLEN----------------LLE----KKQAQFNLLYLSCL 1489 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHH----------------HHH----HHHHHHHHHHHHHH
Confidence 3444777788888888888888888888887766554322111 010 00011122222233
Q ss_pred hcCC---CCCChhhHhh-hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcc---cH
Q 014088 130 CRGK---PQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VL 202 (431)
Q Consensus 130 ~~~~---~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~ 202 (431)
+++. +..+.....+ ++.....++-.+........-..+.. ...++...+|.+-.++.+..++ .|
T Consensus 1490 ~qng~~e~~~Rl~si~alF~A~~~~ill~Ps~~ly~~In~~L~~---------s~~vdlq~iP~F~~ffySs~~e~~t~R 1560 (1758)
T KOG1791|consen 1490 AQNGSRESDPRLISICALFIAFFSDILLVPSEGLYFPINGLLLS---------SKIVDLQGIPIFHRFFYSSVFEHHTER 1560 (1758)
T ss_pred HHccCcCCCcchhhHHHHHHHHHHHHHcCCccccchhHHHHHHh---------hhhcccCCCccHHHHHHhccccccchh
Confidence 3322 2222222222 22233333333322222221111110 1234445566666666553322 34
Q ss_pred HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHc
Q 014088 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLL 280 (431)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~ 280 (431)
.-.+..+.......+ ..+.....+....++....++ .+...+.....+|++-..- +.....+++ .|+...+..++.
T Consensus 1561 ~Wvl~LV~~glks~~-D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~-p~~a~~mle~~Gl~sWi~niI~ 1638 (1758)
T KOG1791|consen 1561 EWVLELVSKGLKSCP-DYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKF-PFYAYEMLEVPGLFSWILNIIP 1638 (1758)
T ss_pred hhhHHHHHHHhcCch-hhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCC-cHHHHHHHhcccHHHHHHHhcc
Confidence 444445544444433 445566778888888888764 1344455666677766654 444555555 788889999998
Q ss_pred cC--CHhHHHH-HHHHHHHhcCC
Q 014088 281 NA--EFEIKKE-AAWAISNATSG 300 (431)
Q Consensus 281 ~~--~~~v~~~-a~~aL~~l~~~ 300 (431)
++ .+..+.. .+.++.++...
T Consensus 1639 s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1639 SSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred ccccchHHHhhhHHHHHHHHHHh
Confidence 87 4444444 55556665543
No 446
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=23.40 E-value=6.2e+02 Score=23.72 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-----------------ccchhHHHH
Q 014088 60 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-----------------HAKLSMLRN 121 (431)
Q Consensus 60 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-----------------~~~~~~~~~ 121 (431)
.+..+++.|+. .++++....+.-|...... +..+...+ +..|.+.|-+ -...++...
T Consensus 142 ~~~~il~~L~~e~dWeV~s~VL~hLp~qL~N----k~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~ 216 (356)
T PF03542_consen 142 WFSVILQCLEHETDWEVYSYVLVHLPSQLSN----KALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVC 216 (356)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhhh----hHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHH
Confidence 45566777764 6777776665555554332 22333222 4444433310 013455666
Q ss_pred HHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCc
Q 014088 122 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSP 199 (431)
Q Consensus 122 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~ 199 (431)
...+|..|......-.......++..+..-+.+. ....++.+|.-.+..-+.... ..++.++.-|+. ...
T Consensus 217 ~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~-----k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 217 VFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMK-----KLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhccch
Confidence 6666777666543333333445555555555432 233445555444433333322 223444333332 233
Q ss_pred ccHHHHHHHHhHhhcCC
Q 014088 200 SVLIPALRTVGNIVTGD 216 (431)
Q Consensus 200 ~v~~~a~~~l~~l~~~~ 216 (431)
.+....+..|..++.-.
T Consensus 289 ~~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 289 NMAIHILEFLSSLSRLP 305 (356)
T ss_pred hhHHHHHHHHHHHhhCc
Confidence 44555666666665543
No 447
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=1.1e+02 Score=28.17 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHHHhHhhcCChhhhHHHhhcCChHHHHHHh--cccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAII 267 (431)
Q Consensus 205 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 267 (431)
..+.+++++...+.....+-+.++++.++.-. .+. ++-+++....++.+|...+.++...+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 56788999988887777777888888877654 344 789999999999999987766655443
No 448
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=22.51 E-value=6.8e+02 Score=25.20 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=40.1
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 174 (431)
+..++...+...++-.++..|+.+.+.. +....... ..+......+|.+.+.-+...|+.++++.+...
T Consensus 484 l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 484 LTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 3334434444556666777777776654 22222122 233334445667778888888888888877654
No 449
>PF14750 INTS2: Integrator complex subunit 2
Probab=22.26 E-value=8.6e+02 Score=26.76 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=71.8
Q ss_pred hCCChHHHHHhhCC-C---C---------HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc------------
Q 014088 57 DHGAVPIFVRLLSS-P---T---------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------------ 111 (431)
Q Consensus 57 ~~g~i~~L~~lL~~-~---~---------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~------------ 111 (431)
++++++.|++..-. + + .+++..++..+..+.-..|...+.+.-+|.-..++..+.
T Consensus 873 ~sa~vqiLlE~c~~~~~~~~~~~~~~~~lrei~~~iC~~iHq~FI~~p~L~klvhfQgyp~~llp~~V~~IPSmHicldf 952 (1049)
T PF14750_consen 873 ESAAVQILLEICLPTEEDKNSDDSLLSELREIQCLICSFIHQMFIADPNLAKLVHFQGYPSELLPMLVEGIPSMHICLDF 952 (1049)
T ss_pred HHHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhcCCCHHHhHHHHccCcHHHHHHHH
Confidence 35788899887632 1 1 156777777777777666766666666664333333321
Q ss_pred -----cccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhc---C-CChHHHHHHHHHHHHhccCChH
Q 014088 112 -----EHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIH---S-NDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 112 -----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~---~-~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
..++.+-+..|....+++|...+-.+.... .-.+..+-.++. . ...++...++-++..++..-|.
T Consensus 953 i~Ell~~~~~~kqvFaI~L~s~L~~~Y~l~~sl~~a~~~~~~~~~ll~~l~~~~~~~~~~~~lP~l~~~~~aFP~ 1027 (1049)
T PF14750_consen 953 IPELLAQPDLEKQVFAIQLASHLCHKYPLPKSLSVARLALNVLSTLLSVLSSDSRSKFLKPVLPALVRICEAFPP 1027 (1049)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHhHHHHHHHHHCCC
Confidence 345777788888899999888654444333 233333333333 2 2355666677777776665543
No 450
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.76 E-value=2.7e+02 Score=28.07 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhcCCCCc-ccHHHHHHHHhHhhc
Q 014088 154 SNDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLRHPSP-SVLIPALRTVGNIVT 214 (431)
Q Consensus 154 ~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~l~~l~~ 214 (431)
.++..+...+++++..+.. +++.....+.+...+..++++|+..+. .+....++++.-+..
T Consensus 38 E~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfe 103 (864)
T KOG2219|consen 38 ENNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFE 103 (864)
T ss_pred ccchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHH
Confidence 3467888888888888763 344556778888888899999987654 566666777655543
No 451
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.12 E-value=1.9e+02 Score=22.89 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 361 QAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 361 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
..-.+...-+.+..++.+++++++..|.++|-.|-+
T Consensus 11 ~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 11 SLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333444445567788889999999999888887655
No 452
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=8.9e+02 Score=24.68 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=78.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHcCChHHHHHHhccc-----cchhHHHHHHHHHHHhhcCC
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEH-----AKLSMLRNATWTLSNFCRGK 133 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~~l~~~-----~~~~~~~~a~~~L~~l~~~~ 133 (431)
++..++.+-..++..++..|.-+|..+|... +.+-..+. -...+..+.++ .+.+.....-+.+.+|..-+
T Consensus 283 liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vl----k~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 283 LIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVL----KTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 4555666666788899999999999888533 22222221 22333333222 12233333445555555543
Q ss_pred CCCChhhHhhhHHHHHHhh----cCCChHHH--------HHHHHHHHHhcc---CChHHHHHHHHhCcHHH---HHHhcC
Q 014088 134 PQPLFEQTRPALPALERLI----HSNDDEVL--------TDACWALSYLSD---GTNDKIQAVIEAGVCPR---LVELLR 195 (431)
Q Consensus 134 ~~~~~~~~~~~i~~L~~lL----~~~~~~v~--------~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~---L~~ll~ 195 (431)
+.......--.+..|.-.| ...+.+-. .+++....++.. +.....+.++. -+++. ++++.-
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvY-pLvQvi~GvirLip 437 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVY-PLVQVILGVIRLIP 437 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhh-HHHHHHHHHhhhcC
Confidence 2222222222233333223 22222111 123333333222 11112221111 12222 223332
Q ss_pred C-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 196 H-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 196 ~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
. .....|..+++.|.+|+..+...+ .+.+.|+++|..
T Consensus 438 T~qy~PLRlhcir~Li~Ls~ssg~fI------Pi~~ll~Eml~~ 475 (661)
T KOG2256|consen 438 TPQYYPLRLHCIRSLISLSRSSGTFI------PLSPLLVEMLKS 475 (661)
T ss_pred cccchhHHHHHHHHHHHHHhhcCcee------ecHHHHHHHHHH
Confidence 2 235688999999999998766444 466777777753
No 453
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.08 E-value=4.6e+02 Score=21.62 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=50.4
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
.+.... .+++.=.++.+..++...... ......+++.+-.++.+++.-++..+.|+|..++...++....+++
T Consensus 109 ~~~~w~-~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 109 LLEEWA-KSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHH-hCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 334444 677777888887777666554 1123456666777777788899999999999999887665544443
No 454
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.93 E-value=9.6e+02 Score=24.97 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHhcC----CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 79 AVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 79 a~~~L~~l~~----~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
..+||+.|+. ..+.+|..+...|++..+.+.|..+...+....+..+|.+|...
T Consensus 349 ~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 349 ETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred HHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 3445555542 24678999999999999999997665555555555555555443
No 455
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=20.89 E-value=78 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCcccCC
Q 014088 400 EDEPLPPGDATQAGFGFAG 418 (431)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (431)
.+++.+++|+||+||.-.|
T Consensus 155 ~~~~~~~eDDpYAdy~IPD 173 (177)
T PF09831_consen 155 PSEAEPDEDDPYADYQIPD 173 (177)
T ss_pred CCCCccccCCCcccCCCCC
Confidence 3444458899999986544
No 456
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.59 E-value=2.1e+02 Score=25.91 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=32.6
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCCh--------------HhHHHHHhCCChHHHHHhhC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTS--------------ENTRVVIDHGAVPIFVRLLS 69 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~L~~lL~ 69 (431)
.|. +.+...|..|+++|.-++.+.- .+...+.+.|+++.+..+|+
T Consensus 68 ~L~-~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 68 QLE-SSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hcc-ccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 454 4467889999999999887551 23445667788888888775
No 457
>PRK09169 hypothetical protein; Validated
Probab=20.56 E-value=1.5e+03 Score=27.28 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHh
Q 014088 380 NTEIYEKAVKILETY 394 (431)
Q Consensus 380 ~~~v~~~a~~~l~~~ 394 (431)
|+.--..+.+.|.++
T Consensus 581 naQ~LAN~LnALSKW 595 (2316)
T PRK09169 581 NAQGLANLLNALSKW 595 (2316)
T ss_pred CHHHHHHHHHHHhhC
Confidence 333334445555554
No 458
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=20.55 E-value=7.5e+02 Score=23.62 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=29.1
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
+...+..++..++-.|+.+. ++.|+.-|...-.+|.++..
T Consensus 167 ~~vaK~yid~~FvlkLLdLF-dSEDpRERe~LKT~LhrIyg 206 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLF-DSEDPREREFLKTILHRIYG 206 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHH
Confidence 34455666677788888888 78888888877777766654
Done!