Query 014088
Match_columns 431
No_of_seqs 307 out of 2259
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 2.1E-55 7.3E-60 428.2 42.4 412 5-430 94-510 (510)
2 3tpo_A Importin subunit alpha- 100.0 6.6E-55 2.2E-59 427.2 43.5 412 5-430 113-529 (529)
3 4b8j_A Importin subunit alpha- 100.0 1.3E-45 4.5E-50 362.4 44.7 406 6-417 112-519 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.2E-43 4E-48 348.5 45.0 388 7-402 126-516 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.6E-42 5.6E-47 333.9 43.2 388 8-402 60-449 (450)
6 1xm9_A Plakophilin 1; armadill 100.0 6.7E-39 2.3E-43 307.3 31.6 364 13-399 4-452 (457)
7 3ul1_B Importin subunit alpha- 100.0 2.9E-37 9.9E-42 300.5 32.5 359 23-396 64-430 (510)
8 3tpo_A Importin subunit alpha- 100.0 3.2E-36 1.1E-40 294.8 34.9 358 24-396 84-449 (529)
9 3l6x_A Catenin delta-1; cateni 100.0 1.3E-36 4.4E-41 292.8 30.2 369 7-397 44-477 (584)
10 4b8j_A Importin subunit alpha- 100.0 1.3E-35 4.5E-40 291.3 37.3 360 21-396 79-443 (528)
11 1wa5_B Importin alpha subunit; 100.0 3.9E-35 1.3E-39 287.9 38.5 369 11-397 87-458 (530)
12 3nmz_A APC variant protein; pr 100.0 2E-36 6.8E-41 285.5 25.8 331 7-344 66-452 (458)
13 3now_A UNC-45 protein, SD10334 100.0 1.4E-35 4.8E-40 294.8 30.9 333 4-347 414-787 (810)
14 3now_A UNC-45 protein, SD10334 100.0 8E-36 2.7E-40 296.5 28.6 372 7-396 369-782 (810)
15 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-33 4.5E-38 277.3 34.1 363 7-394 97-528 (529)
16 2jdq_A Importin alpha-1 subuni 100.0 8.2E-33 2.8E-37 266.1 33.2 363 13-397 22-391 (450)
17 3nmz_A APC variant protein; pr 100.0 1.2E-33 4.2E-38 266.4 25.9 350 36-398 48-452 (458)
18 2z6h_A Catenin beta-1, beta-ca 100.0 2.9E-32 1E-36 273.3 36.2 369 7-399 94-550 (644)
19 2z6g_A B-catenin; FULL-length, 100.0 2.8E-31 9.7E-36 270.2 37.5 363 7-393 230-660 (780)
20 1xm9_A Plakophilin 1; armadill 100.0 4.9E-33 1.7E-37 266.6 19.0 327 6-345 39-452 (457)
21 3l6x_A Catenin delta-1; cateni 100.0 4.9E-32 1.7E-36 261.0 23.6 328 7-346 86-480 (584)
22 3nmw_A APC variant protein; AR 100.0 6.1E-31 2.1E-35 241.2 24.0 268 32-302 47-337 (354)
23 1jdh_A Beta-catenin; beta-cate 100.0 3.1E-30 1.1E-34 253.3 28.7 359 10-393 58-423 (529)
24 3nmw_A APC variant protein; AR 100.0 3.4E-30 1.2E-34 236.2 24.2 274 71-346 44-338 (354)
25 2z6h_A Catenin beta-1, beta-ca 100.0 1.7E-29 5.8E-34 253.3 26.9 369 5-397 8-383 (644)
26 2z6g_A B-catenin; FULL-length, 100.0 6E-28 2.1E-32 245.7 31.7 373 11-395 192-621 (780)
27 4hxt_A De novo protein OR329; 100.0 1.8E-27 6.1E-32 210.4 25.0 240 11-258 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 3.1E-27 1E-31 208.9 24.6 241 59-301 2-243 (252)
29 4db8_A Armadillo-repeat protei 100.0 1.4E-27 4.9E-32 211.1 20.2 238 12-257 13-251 (252)
30 4db8_A Armadillo-repeat protei 100.0 8.4E-27 2.9E-31 206.2 20.8 239 59-299 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 8.9E-26 3.1E-30 201.4 21.5 236 157-400 54-291 (296)
32 4db6_A Armadillo repeat protei 99.9 1.8E-23 6.1E-28 179.4 20.9 200 8-214 9-209 (210)
33 4db6_A Armadillo repeat protei 99.9 3.6E-23 1.2E-27 177.5 22.8 198 142-341 11-208 (210)
34 3opb_A SWI5-dependent HO expre 99.9 2E-22 6.9E-27 196.8 27.2 347 31-396 308-728 (778)
35 1xqr_A HSPBP1 protein; armadil 99.9 2.5E-22 8.5E-27 179.2 21.4 187 31-218 54-242 (296)
36 3opb_A SWI5-dependent HO expre 99.9 2.1E-22 7.3E-27 196.6 21.3 318 20-344 338-730 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-21 3.9E-26 167.3 16.0 197 12-215 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 3.1E-19 1.1E-23 152.3 14.1 197 143-342 8-229 (233)
39 1b3u_A Protein (protein phosph 99.7 1.1E-16 3.8E-21 158.8 22.6 334 26-395 251-586 (588)
40 4fdd_A Transportin-1; heat rep 99.7 1E-16 3.5E-21 166.0 20.1 355 15-396 89-471 (852)
41 4fdd_A Transportin-1; heat rep 99.7 4.2E-17 1.4E-21 168.8 17.0 313 21-346 133-475 (852)
42 1b3u_A Protein (protein phosph 99.7 9.8E-16 3.3E-20 152.0 23.9 298 25-343 95-393 (588)
43 1oyz_A Hypothetical protein YI 99.7 1.2E-15 4.2E-20 136.5 20.2 255 11-338 23-278 (280)
44 3grl_A General vesicular trans 99.7 4.9E-15 1.7E-19 141.4 24.4 317 24-346 29-398 (651)
45 3grl_A General vesicular trans 99.7 5.1E-14 1.7E-18 134.4 30.2 373 11-401 122-555 (651)
46 2vgl_B AP-2 complex subunit be 99.7 2.6E-14 9E-19 141.3 29.3 294 27-345 96-422 (591)
47 1oyz_A Hypothetical protein YI 99.7 8.2E-15 2.8E-19 131.1 22.5 257 56-392 20-278 (280)
48 2bpt_A Importin beta-1 subunit 99.6 3E-14 1E-18 147.7 19.9 321 12-345 366-714 (861)
49 2vgl_B AP-2 complex subunit be 99.6 1.2E-13 4E-18 136.7 22.9 297 25-344 57-384 (591)
50 2bpt_A Importin beta-1 subunit 99.6 6.6E-14 2.3E-18 145.2 21.2 338 30-393 344-708 (861)
51 1ibr_B P95, importin beta-1 su 99.6 4.7E-14 1.6E-18 135.5 16.0 352 21-396 40-437 (462)
52 1qgr_A Protein (importin beta 99.5 2.4E-13 8.1E-18 141.3 20.4 368 12-396 363-827 (876)
53 1qgr_A Protein (importin beta 99.5 1.2E-12 4E-17 136.0 22.2 312 20-345 132-482 (876)
54 3ltm_A Alpha-REP4; protein eng 99.5 1.1E-12 3.9E-17 111.9 18.3 188 58-301 18-205 (211)
55 1w63_A Adapter-related protein 99.5 9.8E-13 3.3E-17 130.5 20.0 323 20-396 146-490 (618)
56 3ltj_A Alpharep-4; protein eng 99.5 3.5E-12 1.2E-16 107.9 20.6 184 59-298 14-197 (201)
57 3ltj_A Alpharep-4; protein eng 99.5 1.8E-12 6.3E-17 109.6 18.0 186 9-256 12-197 (201)
58 1w63_A Adapter-related protein 99.5 2.6E-11 8.9E-16 120.3 27.7 291 60-398 71-381 (618)
59 3ltm_A Alpha-REP4; protein eng 99.5 3.5E-12 1.2E-16 108.8 18.2 186 11-258 19-204 (211)
60 1ibr_B P95, importin beta-1 su 99.5 1.4E-13 4.8E-18 132.2 10.1 318 17-346 91-441 (462)
61 1u6g_C TIP120 protein, CAND1; 99.4 8.6E-12 2.9E-16 134.1 23.9 360 21-396 53-463 (1230)
62 1u6g_C TIP120 protein, CAND1; 99.4 3.3E-12 1.1E-16 137.3 17.8 352 20-395 137-547 (1230)
63 2db0_A 253AA long hypothetical 99.3 8.4E-10 2.9E-14 86.8 18.5 217 57-299 30-246 (253)
64 2vgl_A Adaptor protein complex 99.2 4.1E-09 1.4E-13 104.3 27.5 292 25-343 82-399 (621)
65 2vgl_A Adaptor protein complex 99.2 5.1E-09 1.8E-13 103.6 24.0 299 59-397 74-399 (621)
66 3b2a_A TON_1937, putative unch 99.1 8.1E-09 2.8E-13 85.0 17.0 226 142-393 32-258 (265)
67 2db0_A 253AA long hypothetical 99.1 5.5E-08 1.9E-12 76.6 20.0 220 142-401 31-251 (253)
68 4gmo_A Putative uncharacterize 99.0 8.7E-09 3E-13 103.3 18.4 208 24-256 42-257 (684)
69 4gmo_A Putative uncharacterize 99.0 2.9E-09 9.8E-14 106.8 13.2 196 102-298 35-257 (684)
70 3tjz_B Coatomer subunit gamma; 99.0 5.5E-09 1.9E-13 94.5 13.0 277 60-391 69-348 (355)
71 2qk2_A LP04448P; mini spindles 99.0 5.5E-09 1.9E-13 90.9 12.5 187 104-301 18-207 (242)
72 1ho8_A Vacuolar ATP synthase s 98.9 2.4E-07 8.4E-12 85.6 22.8 323 57-395 75-475 (480)
73 4ady_A RPN2, 26S proteasome re 98.9 1.5E-07 5.3E-12 94.5 22.1 225 31-302 451-679 (963)
74 3tjz_B Coatomer subunit gamma; 98.9 2.3E-08 7.7E-13 90.5 13.5 270 25-338 76-349 (355)
75 2qk2_A LP04448P; mini spindles 98.9 3.4E-09 1.1E-13 92.2 7.6 185 62-257 18-205 (242)
76 4ady_A RPN2, 26S proteasome re 98.8 1E-06 3.5E-11 88.7 25.1 261 28-343 406-677 (963)
77 3b2a_A TON_1937, putative unch 98.8 4.9E-08 1.7E-12 80.4 12.7 187 185-400 33-222 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.8 3.3E-08 1.1E-12 85.9 12.3 191 106-299 21-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 3.9E-08 1.3E-12 85.4 9.6 193 64-257 21-220 (249)
80 2iw3_A Elongation factor 3A; a 98.7 1E-06 3.6E-11 89.6 19.2 301 64-400 19-328 (986)
81 1te4_A Conserved protein MTH18 98.6 1.7E-08 5.7E-13 78.6 2.1 112 25-170 20-131 (131)
82 2iw3_A Elongation factor 3A; a 98.5 1.4E-05 4.9E-10 81.4 22.5 247 35-298 70-323 (986)
83 1te4_A Conserved protein MTH18 98.5 2.4E-08 8.3E-13 77.7 1.7 121 58-212 11-131 (131)
84 1ho8_A Vacuolar ATP synthase s 98.5 4.3E-05 1.5E-09 70.8 22.9 320 20-344 81-478 (480)
85 1wa5_C Importin alpha RE-expor 98.4 4.8E-05 1.6E-09 79.6 22.7 350 16-397 85-526 (960)
86 4hat_C Exportin-1; heat repeat 98.3 0.00029 9.9E-09 73.4 27.4 312 20-346 198-573 (1023)
87 3dad_A FH1/FH2 domain-containi 98.3 2.8E-05 9.6E-10 68.4 16.0 187 145-332 120-326 (339)
88 3dad_A FH1/FH2 domain-containi 98.2 3E-05 1E-09 68.3 14.7 189 189-386 122-326 (339)
89 2x19_B Importin-13; nuclear tr 98.2 0.00039 1.3E-08 72.8 25.0 339 27-397 459-847 (963)
90 2x1g_F Cadmus; transport prote 98.2 0.00065 2.2E-08 71.2 26.6 348 32-394 311-720 (971)
91 2x1g_F Cadmus; transport prote 98.2 0.00032 1.1E-08 73.5 24.2 291 29-343 256-616 (971)
92 1wa5_C Importin alpha RE-expor 98.1 0.00017 5.7E-09 75.5 20.9 251 32-298 376-669 (960)
93 3m1i_C Exportin-1; heat repeat 98.1 0.0053 1.8E-07 64.8 31.6 314 20-346 198-573 (1049)
94 4hat_C Exportin-1; heat repeat 97.9 0.001 3.4E-08 69.4 21.4 144 29-175 465-621 (1023)
95 2x19_B Importin-13; nuclear tr 97.9 0.00081 2.8E-08 70.4 20.1 297 30-344 252-601 (963)
96 3ibv_A Exportin-T; karyopherin 97.8 0.00037 1.3E-08 72.5 15.1 306 28-346 204-570 (980)
97 3gjx_A Exportin-1; transport, 97.7 0.011 3.8E-07 61.6 24.8 315 20-347 210-600 (1073)
98 3ibv_A Exportin-T; karyopherin 97.7 0.003 1E-07 65.7 20.4 342 29-397 455-871 (980)
99 3m1i_C Exportin-1; heat repeat 97.7 0.022 7.6E-07 60.1 27.1 309 62-397 197-570 (1049)
100 4ffb_C Protein STU2; tubulin f 97.6 0.00098 3.4E-08 58.7 13.1 187 106-301 14-214 (278)
101 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00089 3E-08 62.7 11.9 235 25-295 183-432 (800)
102 4ffb_C Protein STU2; tubulin f 97.5 0.0033 1.1E-07 55.3 15.3 188 190-396 14-212 (278)
103 2of3_A ZYG-9; multifunctional 97.4 0.004 1.4E-07 53.6 14.0 179 61-257 48-236 (266)
104 3c2g_A SYS-1 protein; beta-cat 97.4 0.011 3.9E-07 51.8 16.3 309 41-395 266-617 (619)
105 1upk_A MO25 protein; transfera 97.4 0.014 4.7E-07 51.5 16.9 213 53-268 72-297 (341)
106 2of3_A ZYG-9; multifunctional 97.4 0.0016 5.6E-08 56.0 11.0 183 147-345 50-239 (266)
107 2fv2_A RCD1 required for cell 97.3 0.057 1.9E-06 45.5 19.8 188 156-346 14-228 (268)
108 1lrv_A LRV, leucine-rich repea 97.3 0.00014 4.7E-09 62.3 3.8 44 20-81 53-96 (244)
109 3gjx_A Exportin-1; transport, 97.3 0.051 1.7E-06 56.7 23.0 142 242-398 800-955 (1073)
110 3oc3_A Helicase MOT1, MOT1; re 97.2 0.00065 2.2E-08 63.6 7.6 246 60-338 175-432 (800)
111 1upk_A MO25 protein; transfera 97.2 0.038 1.3E-06 48.7 18.0 200 179-391 72-278 (341)
112 2fv2_A RCD1 required for cell 97.0 0.044 1.5E-06 46.1 15.6 101 248-349 76-181 (268)
113 3u0r_A Apoptosis inhibitor 5; 96.9 0.025 8.4E-07 52.3 14.6 248 71-345 40-301 (507)
114 1lrv_A LRV, leucine-rich repea 96.8 0.00083 2.8E-08 57.4 3.7 17 66-82 57-73 (244)
115 3l9t_A Putative uncharacterize 96.7 0.038 1.3E-06 46.2 13.3 141 22-183 76-218 (240)
116 3u0r_A Apoptosis inhibitor 5; 96.3 0.33 1.1E-05 45.0 17.6 123 113-255 39-161 (507)
117 3ebb_A Phospholipase A2-activa 96.0 0.42 1.5E-05 42.1 16.5 162 31-196 116-287 (304)
118 3l9t_A Putative uncharacterize 96.0 0.12 4.2E-06 43.1 12.0 143 105-268 74-218 (240)
119 2f31_A Diaphanous protein homo 95.9 0.099 3.4E-06 44.3 11.8 141 241-388 67-220 (233)
120 1lsh_A Lipovitellin (LV-1N, LV 95.8 0.94 3.2E-05 47.6 20.8 172 103-303 393-580 (1056)
121 3ebb_A Phospholipase A2-activa 95.6 1.1 3.7E-05 39.4 18.0 185 188-392 106-302 (304)
122 3c2g_A SYS-1 protein; beta-cat 95.2 0.29 9.9E-06 43.2 12.0 173 168-342 267-473 (619)
123 3a6p_A Exportin-5; exportin-5, 95.0 0.7 2.4E-05 49.4 17.2 286 29-343 25-381 (1204)
124 3eg5_B Protein diaphanous homo 95.0 0.23 7.9E-06 45.5 11.5 154 226-386 108-284 (383)
125 2f31_A Diaphanous protein homo 94.9 1.4 4.6E-05 37.2 15.5 84 48-133 33-127 (233)
126 3a6p_A Exportin-5; exportin-5, 94.9 1.1 3.8E-05 47.8 18.1 211 71-301 25-278 (1204)
127 3eg5_B Protein diaphanous homo 94.7 1.6 5.5E-05 39.8 16.4 126 48-175 99-249 (383)
128 1x5b_A Signal transducing adap 94.5 0.064 2.2E-06 42.5 5.8 73 314-397 53-126 (163)
129 3fga_B Serine/threonine-protei 93.8 2.2 7.6E-05 38.8 15.1 238 50-301 120-368 (403)
130 2bnx_A Diaphanous protein homo 93.4 1.8 6.2E-05 39.6 14.0 139 241-386 71-222 (386)
131 1lsh_A Lipovitellin (LV-1N, LV 93.2 2.5 8.6E-05 44.4 16.5 165 61-258 393-577 (1056)
132 3ldz_A STAM-1, signal transduc 92.6 0.38 1.3E-05 36.9 7.0 72 314-396 43-114 (140)
133 1mhq_A ADP-ribosylation factor 92.3 0.63 2.1E-05 36.0 7.9 72 314-396 39-116 (148)
134 3qml_C Protein SLS1, nucleotid 92.2 1.2 4E-05 38.7 10.2 135 201-343 44-190 (315)
135 1juq_A ADP-ribosylation factor 92.1 0.71 2.4E-05 36.7 8.3 72 314-396 51-128 (171)
136 1vdy_A Hypothetical protein (R 92.0 0.49 1.7E-05 36.0 6.8 77 314-401 50-135 (140)
137 3g2s_A C-terminal fragment of 91.8 0.8 2.8E-05 35.4 8.0 72 314-396 49-126 (149)
138 2npp_B PP2A, B subunit, serine 91.3 4.5 0.00016 37.5 13.8 237 51-301 154-401 (449)
139 3qml_C Protein SLS1, nucleotid 90.3 4.3 0.00015 35.2 11.7 150 143-298 22-188 (315)
140 2bnx_A Diaphanous protein homo 90.0 11 0.00038 34.3 16.3 133 156-289 71-222 (386)
141 3zyq_A Hepatocyte growth facto 86.9 2.3 7.9E-05 35.5 7.8 71 315-396 47-118 (226)
142 1dvp_A HRS, hepatocyte growth 86.7 2.5 8.6E-05 35.2 8.0 71 315-396 44-115 (220)
143 3gs3_A Symplekin, LD45768P; he 85.9 15 0.00053 31.1 15.1 88 117-212 30-117 (257)
144 3o2t_A Symplekin; heat repeat, 85.6 7.8 0.00027 35.1 11.1 87 118-212 41-127 (386)
145 1elk_A Target of MYB1; superhe 85.3 3.5 0.00012 32.1 7.7 71 315-396 55-130 (157)
146 3ldz_A STAM-1, signal transduc 84.9 1.7 5.7E-05 33.2 5.5 73 271-343 43-115 (140)
147 3o2t_A Symplekin; heat repeat, 83.8 11 0.00039 34.1 11.3 137 244-395 41-182 (386)
148 1vsy_5 Proteasome activator BL 83.5 5.5 0.00019 41.3 10.2 217 103-344 135-367 (997)
149 1w9c_A CRM1 protein, exportin 82.4 25 0.00086 30.9 14.8 179 201-396 45-245 (321)
150 1mhq_A ADP-ribosylation factor 81.7 3.6 0.00012 31.7 6.3 72 271-342 39-116 (148)
151 1x5b_A Signal transducing adap 81.2 2.8 9.5E-05 33.0 5.6 72 271-342 53-125 (163)
152 3g2s_A C-terminal fragment of 79.9 3.6 0.00012 31.7 5.7 73 271-343 49-127 (149)
153 3gs3_A Symplekin, LD45768P; he 77.9 31 0.0011 29.2 16.6 138 243-395 30-172 (257)
154 2jak_A Serine/threonine-protei 77.7 17 0.00059 32.9 10.2 192 52-251 167-361 (392)
155 1juq_A ADP-ribosylation factor 76.2 4.2 0.00014 32.2 5.2 73 271-343 51-129 (171)
156 2npp_B PP2A, B subunit, serine 76.1 49 0.0017 30.6 13.5 184 142-337 161-350 (449)
157 3rru_A TOM1L1 protein; structu 69.9 25 0.00087 27.0 8.2 71 315-396 55-130 (152)
158 1vsy_5 Proteasome activator BL 68.7 13 0.00044 38.7 8.1 185 61-256 135-364 (997)
159 3fga_B Serine/threonine-protei 68.7 69 0.0024 29.1 16.3 229 142-398 128-368 (403)
160 3ut4_A CTHE_2751, putative unc 68.6 11 0.00036 28.3 5.5 95 271-397 32-131 (134)
161 3pst_A Protein DOA1; protein d 67.4 10 0.00035 34.7 6.3 105 67-175 270-392 (425)
162 2jak_A Serine/threonine-protei 64.9 31 0.0011 31.3 8.8 183 142-336 173-361 (392)
163 3zyq_A Hepatocyte growth facto 64.8 7.9 0.00027 32.2 4.7 73 271-343 46-119 (226)
164 3l3f_X Protein DOA1, DOA1/UFD3 64.7 8.4 0.00029 34.5 5.1 105 67-175 207-329 (362)
165 2xpp_A IWS1, ECU08_0440; trans 63.9 39 0.0013 25.7 8.0 75 305-395 53-135 (145)
166 3gae_A Protein DOA1; UFD3, CDC 63.6 20 0.00069 30.3 7.1 103 68-174 99-219 (253)
167 1dvp_A HRS, hepatocyte growth 63.0 12 0.00042 30.9 5.5 74 59-132 42-116 (220)
168 1vdy_A Hypothetical protein (R 60.7 27 0.00094 26.4 6.6 72 271-342 50-130 (140)
169 3pst_A Protein DOA1; protein d 58.5 69 0.0024 29.3 9.9 137 119-263 243-395 (425)
170 1elk_A Target of MYB1; superhe 56.6 21 0.00071 27.7 5.5 73 271-343 54-131 (157)
171 1wjt_A Transcription elongatio 49.9 21 0.00073 25.3 4.1 38 360-397 47-85 (103)
172 2b6c_A Hypothetical protein EF 49.9 1E+02 0.0036 25.1 10.9 134 112-268 65-199 (220)
173 3gae_A Protein DOA1; UFD3, CDC 48.1 13 0.00043 31.6 3.3 102 28-132 101-218 (253)
174 3l3f_X Protein DOA1, DOA1/UFD3 44.6 58 0.002 29.2 7.0 134 119-261 180-330 (362)
175 3nfq_A Transcription factor IW 42.2 1.2E+02 0.0042 23.7 7.8 77 304-396 67-151 (170)
176 1sz9_A PCF11 protein; RNA poly 36.2 1E+02 0.0035 23.3 6.4 89 206-300 27-115 (144)
177 3jxy_A Alkylpurine DNA glycosy 35.1 1.9E+02 0.0064 23.8 10.1 137 24-184 68-207 (232)
178 4atg_A TAF6; transcription, TF 34.2 1.8E+02 0.0062 23.3 11.4 97 115-212 59-160 (196)
179 4atg_A TAF6; transcription, TF 32.7 1.1E+02 0.0037 24.6 6.3 112 59-172 40-162 (196)
180 2g7o_A Protein TRAM; four heli 30.3 51 0.0018 21.3 3.1 20 381-400 50-69 (70)
181 2b6c_A Hypothetical protein EF 29.8 2.2E+02 0.0077 23.1 12.6 136 24-182 62-198 (220)
182 1sz9_A PCF11 protein; RNA poly 28.9 1.5E+02 0.0051 22.3 6.3 74 142-215 42-115 (144)
183 3jxy_A Alkylpurine DNA glycosy 28.9 2.4E+02 0.0083 23.1 9.7 142 106-270 65-208 (232)
184 1pqv_S STP-alpha, transcriptio 26.6 1.2E+02 0.004 26.5 6.0 37 360-396 38-74 (309)
185 3s4w_B Protein FACD2, fanconi 26.6 1.6E+02 0.0054 31.6 7.8 99 111-214 409-507 (1323)
186 3rru_A TOM1L1 protein; structu 26.5 85 0.0029 24.0 4.5 73 271-343 54-131 (152)
187 4fu3_A Regulation of nuclear P 26.4 1.7E+02 0.0058 21.5 6.2 57 105-171 11-67 (135)
188 1f59_C NSP1P, FXFG nucleoporin 26.1 65 0.0022 15.7 2.8 21 411-431 7-27 (28)
189 4flb_A Regulation of nuclear P 24.8 1.1E+02 0.0038 22.5 4.9 95 104-212 11-110 (132)
190 3on0_A Protein TRAM; DNA bindi 24.2 52 0.0018 23.9 2.6 23 381-403 105-127 (127)
191 3g16_A Uncharacterized protein 21.3 41 0.0014 25.9 1.8 18 409-426 135-152 (156)
192 1vsy_4 Proteasome activator BL 20.4 4.3E+02 0.015 26.6 9.4 112 60-172 340-455 (799)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.1e-55 Score=428.17 Aligned_cols=412 Identities=47% Similarity=0.782 Sum_probs=352.6
Q ss_pred chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
+..++.|++|.+|. +|.+++++.+|..|+|+|+|++.++++.+..+++.|++|.|+++|+++++.+++.|+|+|+
T Consensus 94 ~~ii~~G~ip~LV~-----lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 94 DNIIRAGLIPKFVS-----FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168 (510)
T ss_dssp HHHHHTTHHHHHHH-----HTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHH-----HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45678999999999 6666778899999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEV 159 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v 159 (431)
||+.+.+..|..+.+.|++++++.++.... ...+++.++|++++++.+. +........+++|.|++++.++++++
T Consensus 169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 248 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 248 (510)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999995322 3457889999999999987 55566667899999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
+..++|+|.+++.+.+...+.+.+.|+++.|+.++.+++..++..+++++++++..++.....+++.|+++.|..+|.++
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 328 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS
T ss_pred HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC
Confidence 99999999999999888888888999999999999999999999999999999999998888999999999999999998
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
+..+++.|+|+|+|++.++++..+.+++.|+++.|+.++.+++.+++.+|+|+|+|++..++.++...+.+.|+++.|+
T Consensus 329 -~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 329 -KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp -SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999998999999999999999999999999999999999999999988889999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
++++.++++++..++++|.++++.+++.. ..+.++..+.+.||+++|+.|++|+|++++++|..+|++||++|+
T Consensus 408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 408 NLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999998876532 245688999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088 400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430 (431)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
+||+....+.+..+|.|...+ .|.|||||
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 510 (510)
T 3ul1_B 482 EEDQNVVPETTSEGFAFQVQD--GAPGTFNF 510 (510)
T ss_dssp -------------------------------
T ss_pred ccccccCCCCCccccccCCCC--CCCCCCCC
Confidence 766654444556668887543 46699998
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=6.6e-55 Score=427.15 Aligned_cols=412 Identities=47% Similarity=0.775 Sum_probs=352.6
Q ss_pred chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
+..++.|++|.+|. +|..++++.+|..|+|+|+|++.++++.+..+++.|++|.|+.+|.++++.+++.|+|+|+
T Consensus 113 ~~ii~~G~ip~Lv~-----lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 113 DNIIRAGLIPKFVS-----FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 187 (529)
T ss_dssp HHHHHTTHHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHH-----HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45678899999999 6767788999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEV 159 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v 159 (431)
||+.+++..+..+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.++++++
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999995322 3457889999999999987 55566677899999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
+..++|+|.+++.+.+...+.+...|+++.|+.++.+++..++..+++++++++.+++.....+++.|+++.|..+|.++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence 99999999999999888888888999999999999999999999999999999999998888999999999999999998
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++.+++.+|+|+|+|++..+++++...+.+.|+++.|+
T Consensus 348 -~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~ 426 (529)
T 3tpo_A 348 -KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 426 (529)
T ss_dssp -SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred -CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence 9999999999999999998999999999999999999999999999999999999999988889999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~ 399 (431)
++++.++++++..++++|.++++.++... ..+.+...+.+.||+++|+.|++|+|.+++++|..+|++||++|+
T Consensus 427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 427 NLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999998776532 245588899999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088 400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430 (431)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
+||+......+..+|.|... +.|.|||||
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~--~~~~~~f~f 529 (529)
T 3tpo_A 501 EEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 529 (529)
T ss_dssp -------------------------------
T ss_pred ccccccCCCCCCcccccCCC--CCCCCCCCC
Confidence 76665444555666888654 346699998
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-45 Score=362.41 Aligned_cols=406 Identities=80% Similarity=1.225 Sum_probs=353.0
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 85 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 85 (431)
..++.|++|.++. +|.+.+++.+|..|+++|++++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|++
T Consensus 112 ~~~~~g~v~~Lv~-----lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 112 EVIQSGVVPRFVQ-----FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGN 186 (528)
T ss_dssp HHHHTTCHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3456788988888 55544448999999999999999889999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088 86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW 165 (431)
Q Consensus 86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 165 (431)
++.+.+..+..+...|+++.|+.++..+.++.++..++|+|++++...+........+++|.|+.++.+++++++..+++
T Consensus 187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 266 (528)
T 4b8j_A 187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACW 266 (528)
T ss_dssp HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99988888999999999999999997778899999999999999998766777777999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088 166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 245 (431)
+|.+++...+...+.+.+.|+++.|+.+|.++++.++..++++|++++.+++...+.+++.++++.|+.+|.++.++.++
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK 346 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence 99999998888878888999999999999999999999999999999998888888899999999999999876578999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 325 (431)
..|+|+|+|++.++++..+.+++.|+++.|+.++.+++..++..|+++|++++..+.++....+.+.|+++.|+.++..+
T Consensus 347 ~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 426 (528)
T 4b8j_A 347 KEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 99999999999988888999999999999999999999999999999999999987788999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCC
Q 014088 326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLP 405 (431)
Q Consensus 326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~~ 405 (431)
+++++..++++|.+++...+....... ...+.+...+.+.|+++.|..+++|+++++++.|..++++||+.|+++|..+
T Consensus 427 d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~ 505 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGA 505 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 999999999999999987766432111 1345689999999999999999999999999999999999999877665443
Q ss_pred CCC--CCCCCcccC
Q 014088 406 PGD--ATQAGFGFA 417 (431)
Q Consensus 406 ~~~--~~~~~~~~~ 417 (431)
..+ ..++.|+|.
T Consensus 506 ~~~~~~~~~~~~~~ 519 (528)
T 4b8j_A 506 TTVAAPQGATFDFG 519 (528)
T ss_dssp --------------
T ss_pred cCCCccccceeccC
Confidence 322 223445554
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.2e-43 Score=348.47 Aligned_cols=388 Identities=56% Similarity=0.860 Sum_probs=349.3
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
.++.|++|.++. +|.+.+++.+|..|+++|++++.++++.+..+++.|+++.|+.+|+++++.++..|+|+|+++
T Consensus 126 ~~~~g~i~~Lv~-----~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l 200 (530)
T 1wa5_B 126 VIQAGVVPRLVE-----FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 200 (530)
T ss_dssp HHHTTCHHHHHH-----TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456788888888 554434789999999999999998889999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW 165 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 165 (431)
+.+.+..+..+...|+++.|+.++ .+.++.++..++|+|++++.+. +........+++|.|+.++.+++++++..+++
T Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~ 279 (530)
T 1wa5_B 201 AGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279 (530)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred hCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 999888899999999999999999 5588999999999999999886 66666677899999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088 166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 245 (431)
+|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++...+.+++.++++.|+.+|.++ ++.++
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr 358 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIK 358 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHH
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHH
Confidence 99999988877777788889999999999999999999999999999998888888888899999999999999 89999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~ 323 (431)
..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++|++++..+.+ +..+.+.+.|+++.|+.++.
T Consensus 359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999999998888889999999999999999999999999999999999987665 78888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 402 (431)
Q Consensus 324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~ 402 (431)
.+++.++..++++|.+++...+..... .....+.+...+.+.|+++.|..|++++++++++.|..+|++||.+|++||
T Consensus 439 ~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 439 IADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 516 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence 999999999999999999877653211 011245688999999999999999999999999999999999999877653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.6e-42 Score=333.86 Aligned_cols=388 Identities=60% Similarity=0.940 Sum_probs=346.0
Q ss_pred hhh-hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 8 FEC-ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 8 ~~~-g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
++. |++|.++. +|.+.+++.+|..|+++|.+++..+++....+++.|+++.|+++|+++++.++..++++|+++
T Consensus 60 ~~~~~~i~~L~~-----~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 60 ISTPGVVARFVE-----FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp HTSTTHHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHH-----HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344 78888887 555444889999999999999998888888899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW 165 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 165 (431)
+.+.+..+..+.+.|+++.++.++..+.+..++..++|+|++++.+. +........+++|.++.++.+++++++..+++
T Consensus 135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99988889999999999999999965678999999999999999876 55555556899999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088 166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 245 (431)
+|.+++...+.....+...++++.++.++.++++.++..++++|++++...+...+.+++.++++.|++++.++ ++.+|
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr 293 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIK 293 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHH
Confidence 99999998777777788889999999999999999999999999999998887777788889999999999998 89999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 325 (431)
..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+++|++++....++..+.+.+.|+++.|+++++.+
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 99999999999988888889999999999999999999999999999999999876678888888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088 326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 402 (431)
Q Consensus 326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~ 402 (431)
+++++..++++|.+++...+..... +....+++...+.+.|+++.|..++++++.++++.|..+|++||++|+++|
T Consensus 374 ~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 374 DSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred CHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999877654221 112345689999999999999999999999999999999999998776654
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.7e-39 Score=307.32 Aligned_cols=364 Identities=17% Similarity=0.168 Sum_probs=303.1
Q ss_pred hhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH
Q 014088 13 ISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92 (431)
Q Consensus 13 ~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 92 (431)
+|.+|. +|. ++++++|..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.++++
T Consensus 4 l~~lv~-----~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 4 IPKAVQ-----YLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp HHHHHH-----HHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHH-----HHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 566666 554 66789999999999999987888888999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc--------C--------CC
Q 014088 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------ND 156 (431)
Q Consensus 93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--------~--------~~ 156 (431)
.+..+.+.|+++.|+++|..+.++++++.++|+|+|++.+......... +++|.|++++. + .+
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999995478899999999999999998433333444 99999999993 2 24
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCC-------------
Q 014088 157 DEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD------------- 216 (431)
Q Consensus 157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~------------- 216 (431)
++++..++|+|.|++.+ +.....+.+. |+++.|+.++.+ .+..++..++.++.+++...
T Consensus 157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 67778999999999988 6677778887 999999999975 46678889999999987321
Q ss_pred -------------------------------------hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 217 -------------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 217 -------------------------------------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
+...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 1122334556778899999987767899999999999999854
Q ss_pred HH---HH-HHHH-HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC------HH
Q 014088 260 VN---QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PR 328 (431)
Q Consensus 260 ~~---~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~ 328 (431)
.. .. +..+ +.|++|.|+++|.+++.+++.+|+|+|.|++... ....++..+++++|++++...+ .+
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 32 12 3344 5899999999999999999999999999998853 3344556689999999998764 36
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 014088 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED 399 (431)
Q Consensus 329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~e~ 399 (431)
+...++++|.+++..... ....+.+.|+++.|.+|+.++ ++++++.|.++|++||..++
T Consensus 393 v~~~~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 888999999999865433 477788999999999999999 99999999999999998664
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.9e-37 Score=300.47 Aligned_cols=359 Identities=24% Similarity=0.352 Sum_probs=313.8
Q ss_pred hhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 23 HCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 23 ~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
+.+ .|++++.|..|+..+.++.+ ....-.+.+++.|+||.|+++|+. .++.++..|+|+|+||+..+++.+..+.+.
T Consensus 64 ~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~ 142 (510)
T 3ul1_B 64 KGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142 (510)
T ss_dssp HHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 355 47789999999999998754 333446889999999999999986 568999999999999999999999999999
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCC
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-----DEVLTDACWALSYLSDGT 174 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~ 174 (431)
|+++.|+.+| .+++.++++.|+|+|+|++.+.+. .......|+++.++.++...+ ..++..+++++.+++.+.
T Consensus 143 GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 143 GAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp THHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 9999999999 788999999999999999988643 334455899999999998654 356889999999999875
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088 175 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 254 (431)
Q Consensus 175 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 254 (431)
..........++++.|+.++.++++.++..++++|++++.........+.+.|+++.|+++|.++ +..++..++++|+|
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~n 300 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN 300 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHH
Confidence 44333334457899999999999999999999999999998888888888999999999999999 99999999999999
Q ss_pred hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 014088 255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 334 (431)
Q Consensus 255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al 334 (431)
++.+++.....+++.|+++.|+.++.+++..++..|+|+|+|++... +++...+.+.|+++.|+.++++.+.+++..|+
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 99988999999999999999999999999999999999999998854 57888889999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 335 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
++|.|++..+... ....+.+.|+++.|..++.++++++...+.++|.+++.
T Consensus 380 ~aL~Nl~~~~~~~-----------~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 380 WAITNYTSGGTVE-----------QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHCCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHH-----------HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999865433 25667789999999999999999999999888877654
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.2e-36 Score=294.80 Aligned_cols=358 Identities=24% Similarity=0.354 Sum_probs=314.1
Q ss_pred hhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG 101 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 101 (431)
.+ .|++++.+..|+..+.++.+ ......+.+++.|+||.|+++|+. .++.++..|+|+|+|++.+++..+..+.+.|
T Consensus 84 ~l-~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G 162 (529)
T 3tpo_A 84 GI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 162 (529)
T ss_dssp HH-TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred Hh-cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 44 47789999999999998754 344557889999999999999975 6699999999999999999988889999999
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-----DEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~ 175 (431)
+++.|+.++ .+++.++++.|+|+|+|++.+.+. .......|+++.|+.++...+ ..++..++|++.+++.+..
T Consensus 163 aip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 163 AIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 999999999 888999999999999999987643 334455889999999998654 3568899999999998765
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088 176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 176 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
.........++++.|+.++.++++.++..++++|++++.........+...|+++.|+++|.++ +..++..++++|+|+
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNI 320 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHH
Confidence 4333344457899999999999999999999999999998888888888999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088 256 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 335 (431)
Q Consensus 256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~ 335 (431)
+.+++.....+++.|+++.|+.++.+++..++..|+|+|+|++.+. +.+...+.+.|+++.|+.++++.+.+++..|++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 9988999999999999999999999999999999999999999864 578888889999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 336 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
+|.|++..+... ....+.+.|+++.|..++.++++++...+.++|.+++.
T Consensus 400 aL~nl~~~~~~~-----------~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 400 AITNYTSGGTVE-----------QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----------HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999998765432 25667789999999999999999999999888877653
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.3e-36 Score=292.75 Aligned_cols=369 Identities=18% Similarity=0.218 Sum_probs=301.4
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
.++.+.+|.+|. ++.++++++|..|+++|.+++..+.+.+..+++.|+||.|+++|+++++.+++.|+|+|.||
T Consensus 44 ~~~~~~i~~LV~------~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 44 NWRQPELPEVIA------MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCCHHHHHH------HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHH------HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 345678888888 55677899999999999999998999999999999999999999999999999999999999
Q ss_pred cCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------------
Q 014088 87 AGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------ 153 (431)
Q Consensus 87 ~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------------ 153 (431)
+.. +++++..+.+.|++++|+.+|....+.++++.++++|++|+.... .+.....+.+|.|++++.
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC-----
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccc
Confidence 985 688999999999999999999655788999999999999998643 333334678999999771
Q ss_pred ------CCChHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCChh--
Q 014088 154 ------SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM-- 218 (431)
Q Consensus 154 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~-- 218 (431)
..+++++..+.++|.||+...++..+.+.+. |+++.|+.+++. .+....+.|+++|.||+.....
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 2357999999999999999887756667764 667899999864 4567889999999999975211
Q ss_pred -----------------------hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH---HHHH-HHHHhCC
Q 014088 219 -----------------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGI 271 (431)
Q Consensus 219 -----------------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~ 271 (431)
....+.+.++++.|+.+|.+..++.+++.|+|+|.||+.+.. ...+ .+.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 111122334567888999755479999999999999998642 2223 3445788
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHh
Q 014088 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKA 343 (431)
Q Consensus 272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~al~~L~~l~~~ 343 (431)
++.|+++|.+++.+++..|+++|.|++.... ... .+..++++.|+++|... +.++...++++|.|++..
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998653 223 34778999999999865 357888999999999865
Q ss_pred hhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 014088 344 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 397 (431)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~ 397 (431)
... ....+.+.|+++.|..|+.+. .+.+++.|.++|..+|..
T Consensus 434 ~~~------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 434 NLE------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp CHH------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CHH------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 443 256677899999999998775 899999999999998864
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-35 Score=291.29 Aligned_cols=360 Identities=24% Similarity=0.337 Sum_probs=316.7
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
+++.| .++++.+|..|+++|.+++.... +....+++.|++|.|+++|++++ +.++..|+|+|++++.+.+..+..+.
T Consensus 79 lv~~L-~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 79 MIGGV-YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33356 46679999999999999976554 67788999999999999999876 99999999999999999888999999
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChH
Q 014088 99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
+.|+++.|+.+| .++++.++..|+|+|++++.+.+. .......++++.|+.++ .+.++.++..++|+|.+++...+.
T Consensus 158 ~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 158 DHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred hCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999 667899999999999999987533 23334468999999999 577899999999999999987533
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256 (431)
Q Consensus 177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 256 (431)
... ....++++.|+.++.++++.++..++++|++++...+...+.+++.++++.|+++|.++ ++.++..|+++|+|++
T Consensus 237 ~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 237 PSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIV 314 (528)
T ss_dssp CCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred CcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Confidence 322 34469999999999999999999999999999998887778888999999999999999 8999999999999999
Q ss_pred cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088 257 AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 335 (431)
Q Consensus 257 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~ 335 (431)
.+++...+.+++.|+++.|+.++.++ +..++..|+|+|+|++.. .++....+.+.|+++.|+.+++..++.++..+++
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 98889899999999999999999998 999999999999999984 5677888889999999999999889999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 336 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
+|.++...+... ....+.+.|+++.|..++.+++++++..|.++|..++.
T Consensus 394 aL~nl~~~~~~~-----------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 394 AISNATSGGSHD-----------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 999999874322 35667788999999999999999999999888877754
No 11
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.9e-35 Score=287.90 Aligned_cols=369 Identities=22% Similarity=0.318 Sum_probs=319.2
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCC-hHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAG 88 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 88 (431)
+.+|.++. .| .++++.+|..|+++|.+++... ...+..+++.|++|.|+.+|.++ ++.++..|+|+|++++.
T Consensus 87 ~~i~~lv~-----~L-~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 87 QELPQMTQ-----QL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp CCHHHHHH-----HH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-----HH-cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 34555555 55 4667999999999999997642 44567788999999999999997 89999999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWAL 167 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 167 (431)
..+..+..+...|+++.|+.+| .++++.++..|+|+|++++...+ ........++++.|+.++.+.+++++..++++|
T Consensus 161 ~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 239 (530)
T 1wa5_B 161 GTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 239 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Confidence 8888888999999999999999 67899999999999999998752 233334478999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 247 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 247 (431)
.+++.+...........++++.|+.++.++++.++..++++|++++...+.....+++.++++.|+.++.++ ++.++..
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~ 318 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTP 318 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHH
Confidence 999976522223345569999999999999999999999999999988777778888899999999999988 8999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 327 (431)
|+++|+|++.+++...+.+++.|+++.|+.++.++++.++..|+++|++++... +++...+.+.++++.|+.+++.+++
T Consensus 319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999999988888888999999999999999999999999999999999854 5777788899999999999998999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 328 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
.++..++++|.+++....... .....+.+.|+++.|..++.+++++++..|.++|..++..
T Consensus 398 ~v~~~a~~aL~~l~~~~~~~~---------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 398 KTKKEACWAISNASSGGLQRP---------DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCT---------HHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999998643200 0345566789999999999999999999999999887653
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=285.46 Aligned_cols=331 Identities=18% Similarity=0.157 Sum_probs=279.8
Q ss_pred hhhhhhhhhhhHHHHHhhhccCC-----------ChHHHHHHHHHHHHHcCCChHhHHHHHhCCCh----------HHHH
Q 014088 7 RFECILISLFVDQFFFHCFFSCC-----------FGAVQFEAAWALTNIASGTSENTRVVIDHGAV----------PIFV 65 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~ 65 (431)
.++.|.+|.+|+ +|..++ +++++..|+|+|.||+.+.++..+...+.+++ +.++
T Consensus 66 ~~~~g~~p~lv~-----~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (458)
T 3nmz_A 66 MRQSGCLPLLIQ-----LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140 (458)
T ss_dssp HHHHTCHHHHHH-----HHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHH-----HHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHH
Confidence 468999999999 555433 27999999999999999888888888888888 6677
Q ss_pred HhhCCCC--HH-----HHH-------HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHH
Q 014088 66 RLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRN 121 (431)
Q Consensus 66 ~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~ 121 (431)
+++.+.. .+ +++ +|+|+|.|++.+ +++|+.+.+.|++++|+.+|.. +.++.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~ 219 (458)
T 3nmz_A 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219 (458)
T ss_dssp HHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHH
Confidence 7776542 22 444 899999999776 7899999999999999999942 245789999
Q ss_pred HHHHHHHhhcCCCCCChhh--HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCC
Q 014088 122 ATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHP 197 (431)
Q Consensus 122 a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~ 197 (431)
|+|+|.||+.+.+..+... ..+.+|.|+.+|.+++++++..++|+|.|++.. ++.....+.+.|+++.|+.+| .+.
T Consensus 220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~ 299 (458)
T 3nmz_A 220 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 9999999998864233222 356799999999999999999999999999985 455667788999999999975 557
Q ss_pred CcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchh---hHHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 014088 198 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAG 270 (431)
Q Consensus 198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~ 270 (431)
+..++..++.+|+||+...+.....+. ..|+++.|+++|.+..+. .+++.|+|+|.|++. .+++.++.+.+.|
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 788999999999999985544555555 789999999999877222 599999999999996 6789999999999
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
+++.|+.+|.+++..++++|+++|.|++.. ++++...+.+.|+++.|+++++.+++.+++.|+++|.+++...
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999864 4688899999999999999999999999999999999998754
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-35 Score=294.77 Aligned_cols=333 Identities=17% Similarity=0.153 Sum_probs=287.3
Q ss_pred cchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-----------------------------HhH--
Q 014088 4 FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-----------------------------ENT-- 52 (431)
Q Consensus 4 ~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~-- 52 (431)
..++.+.|++|.+|. |.+++++.+++.|+++|.|++.+.+ ..+
T Consensus 414 ~~lv~d~g~Ip~LV~------LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 414 EKLIEDKASIHALMD------LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp HHHHHCHHHHHHHHH------HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHH------HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 345556799999999 5557788999999999999998542 122
Q ss_pred -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 53 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 53 -~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
+.+++.|++|.|+.+|+++++.+++.|+|+|+|++.+ +++|..+.+.|++++|+.+| .+.++..++.|+|+|.+++.
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhc
Confidence 6888999999999999999999999999999999975 56899999999999999999 66778899999999999997
Q ss_pred CC-CCCCh--hhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088 132 GK-PQPLF--EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207 (431)
Q Consensus 132 ~~-~~~~~--~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 207 (431)
+. +.... ....+++|.|+.+|.++ +...+..++++|.|++..++...+.+++.|+++.|+.++.++++.++..|++
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 63 21111 12356899999999865 3445678999999999998777788999999999999999999999999999
Q ss_pred HHhHhhcCChhhhHHHhh-cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHh
Q 014088 208 TVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFE 285 (431)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~ 285 (431)
+++|++.+.+. ...+++ .+.++.|+.++.+. +..+|..|+|+|+|++.+++...+.+++ .|+++.|++++.+++.+
T Consensus 646 ~L~NLa~~~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~ 723 (810)
T 3now_A 646 CLCNLVMSEDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723 (810)
T ss_dssp HHHHHTTSHHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHH
T ss_pred HHHHHhCChHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHH
Confidence 99999987664 444554 78999999999998 9999999999999999977888999998 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhh
Q 014088 286 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAE 347 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~ 347 (431)
++..|+|+|.|++.. ++++...+.+.|++++|..+++.. +.++.+.|+.+|.++++.+.-.
T Consensus 724 vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 724 VQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999985 468899999999999999999754 7899999999999999876543
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8e-36 Score=296.52 Aligned_cols=372 Identities=16% Similarity=0.111 Sum_probs=309.0
Q ss_pred hhhhhhhhhhhHHHHHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088 7 RFECILISLFVDQFFFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALG 84 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 84 (431)
.++.|.+..+++ .++++|.+. .+++++..|+++|.+++. .++.+..++ +.|++|.|+.+|+++++.++..++|+|+
T Consensus 369 ~~~~g~i~~Lv~-~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~ 446 (810)
T 3now_A 369 PFGDGAALKLAE-ACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446 (810)
T ss_dssp SSTTTHHHHHHH-HHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred chhhccHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344455544443 455577654 278999999999999998 566666666 5799999999999999999999999999
Q ss_pred HhcCCCh-----------------------------HHH---HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 85 NVAGDSP-----------------------------KCR---DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 85 ~l~~~~~-----------------------------~~~---~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
|++.+.+ ..+ ..+.+.|+++.|+.++ +++++.+++.|+|+|.|++.+
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC
Confidence 9997541 122 6788999999999999 678999999999999999976
Q ss_pred CCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhcCCCCc-ccHHHHHHHH
Q 014088 133 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVCPRLVELLRHPSP-SVLIPALRTV 209 (431)
Q Consensus 133 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~l 209 (431)
.+........|++|.|+.+|.++++..+..|+|+|.+++...+.... .....++++.|+.+|.++.. ..+..++++|
T Consensus 526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL 605 (810)
T 3now_A 526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 55444555689999999999999999999999999999865332211 00113689999999986533 3346799999
Q ss_pred hHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHH
Q 014088 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKK 288 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~ 288 (431)
.||+..++...+.+++.|+++.|.+++.++ ++.++..|+++|+|++.+ ++....+++ .|.++.|+.++..++..++.
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHH
Confidence 999999888888899999999999999998 899999999999999987 556666665 68999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhc
Q 014088 289 EAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE 367 (431)
Q Consensus 289 ~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (431)
.|+|+|++++.. .+.+.+.+.+ .|+++.|+.++.+++.+++..++++|.|+...... ....+.+.|
T Consensus 684 ~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e------------~~~~l~e~G 750 (810)
T 3now_A 684 ACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE------------IAKKLFETD 750 (810)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH------------HHHHHHTST
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH------------HHHHHHHCC
Confidence 999999999974 3477888888 89999999999999999999999999999875432 477888999
Q ss_pred cHHHHHHhhcCC---CHHHHHHHHHHHHHhcC
Q 014088 368 GLEKIENLQSHD---NTEIYEKAVKILETYWV 396 (431)
Q Consensus 368 ~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~ 396 (431)
+++.|..++..+ ++++.+.|..+|+....
T Consensus 751 ~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 751 IMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 999999997544 89999999999988765
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.3e-33 Score=277.32 Aligned_cols=363 Identities=20% Similarity=0.206 Sum_probs=295.4
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
..+.|++|.++. +.+++++.++..|+++|.+++..++..+..+.+.|++|.|+++|+++++.++..++.+|.++
T Consensus 97 i~~~g~i~~L~~------lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 97 IFKSGGIPALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456789999988 55677799999999999999987778888899999999999999999999999988899888
Q ss_pred cCCChHHHHHHHHcC------------------------------------------ChHHHHHHhccccchhHHHHHHH
Q 014088 87 AGDSPKCRDLVLSNG------------------------------------------ALMPLLAQFNEHAKLSMLRNATW 124 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~------------------------------------------~i~~l~~~l~~~~~~~~~~~a~~ 124 (431)
+..+++.+..+.+.| +++.++.++ .+.++++++.++|
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHH
Confidence 876655555554444 444555555 3446778888899
Q ss_pred HHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCcccH
Q 014088 125 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVL 202 (431)
Q Consensus 125 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~ 202 (431)
+|.+++...+... ...+.+|.+++++.+++++++..++++|.+++.+.+.....+.+.|+++.++.++.+ +++.++
T Consensus 250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 9999988753322 235889999999999999999999999999999887777889999999999999975 347899
Q ss_pred HHHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH
Q 014088 203 IPALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 279 (431)
Q Consensus 203 ~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 279 (431)
..++++|++++...+. .+..+.+.++++.|+++|.++.++.++..++|+|+|++.+ ++....+.+.|+++.|++++
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHH
Confidence 9999999999886543 3556788899999999999883369999999999999986 44457888999999999999
Q ss_pred ccCCHhHHHHHHHHHHH----------------------hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088 280 LNAEFEIKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337 (431)
Q Consensus 280 ~~~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L 337 (431)
.++++++|.+|+|+++| ++. .++....+.+.|+++.|+.++.++++.++..+.++|
T Consensus 407 ~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l 484 (529)
T 1jdh_A 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484 (529)
T ss_dssp HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence 98888888777766665 443 235566788999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088 338 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 394 (431)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 394 (431)
.++....+ ++..+.+.|+++.|..+++++++++++.|.++|.++
T Consensus 485 ~~l~~~~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 485 CELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTSHH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCHH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99874321 477888999999999999999999999999999875
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=8.2e-33 Score=266.10 Aligned_cols=363 Identities=23% Similarity=0.288 Sum_probs=308.6
Q ss_pred hhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC--CChHhHHHHHhC-CChHHHHHhhCCC-CHHHHHHHHHHHHHhcC
Q 014088 13 ISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS--GTSENTRVVIDH-GAVPIFVRLLSSP-TDDVREQAVWALGNVAG 88 (431)
Q Consensus 13 ~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 88 (431)
+|.++. .| .++++.+|..|+.+|.++.. .++.. +.+++. |+++.|+++|+++ ++.++..++++|.+++.
T Consensus 22 l~~l~~-----~l-~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIE-----MI-FSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHH-----HH-HSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHH-----Hh-cCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 555555 55 46789999999999999753 23333 446666 9999999999997 89999999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcC-CChHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHS-NDDEVLTDACWA 166 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~ 166 (431)
..++....+.+.|+++.++.++ .++++.++..|+++|++++...+.. ......++++.++.++.+ .+.+++..++++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8877777888899999999999 6779999999999999999875322 223346899999999995 689999999999
Q ss_pred HHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088 167 LSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 167 L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 245 (431)
|++++.+. +.....+. .++++.|+.++.++++.++..++++|++++...+.....+...++++.|++++.++ ++.++
T Consensus 174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 251 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVV 251 (450)
T ss_dssp HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence 99999764 22212122 58999999999999999999999999999988777777788889999999999988 89999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 325 (431)
..|+++|++++.+++...+.+++.|+++.|++++.++++.++..|+++|++++... ++....+.+.++++.|+.+++++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-RAQIQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcC
Confidence 99999999999988888888889999999999999999999999999999999753 56777788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
+++++..++++|.++....... ....+.+.|+++.|..++.+++++++..|.++|..+...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~-----------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAE-----------QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998763221 134455789999999999999999999999999887753
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=266.43 Aligned_cols=350 Identities=17% Similarity=0.165 Sum_probs=286.6
Q ss_pred HHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC------------CHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
..++.|..+.. +++.|..+++.|++|.|+++|+.. +++++..|+|+|.||+...++......+.+.+
T Consensus 48 ~~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~ 126 (458)
T 3nmz_A 48 DMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL 126 (458)
T ss_dssp HHHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 37778888887 677889999999999999999963 27999999999999997666655555555555
Q ss_pred ----------HHHHHHhcccc-chh-----HHH-------HHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC------
Q 014088 104 ----------MPLLAQFNEHA-KLS-----MLR-------NATWTLSNFCRGKPQPLFEQTRPALPALERLIHS------ 154 (431)
Q Consensus 104 ----------~~l~~~l~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~------ 154 (431)
+.+++++.... +.+ +++ +|+|+|.|++.+...+......|+++.|+.+|..
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 55566664321 112 444 8999999998875555556668999999999952
Q ss_pred -----CChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcC
Q 014088 155 -----NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQ 227 (431)
Q Consensus 155 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~ 227 (431)
.++.++..|+|+|.|++.+++.....+.. .|+++.|+.+|.+++++++..++++|+||+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 34678999999999999888755554543 46699999999999999999999999999985 566778888999
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH-HhCCHHHHHHHHccCCH----hHHHHHHHHHHHhcCC--
Q 014088 228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEF----EIKKEAAWAISNATSG-- 300 (431)
Q Consensus 228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~----~v~~~a~~aL~~l~~~-- 300 (431)
+++.|+++|.+..+..+++.|+.+|+||+.++++....+. ..|+++.|++++.+++. +++++|+++|.|++..
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 9999999864432789999999999999985567677776 68999999999987743 4999999999999862
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380 (431)
Q Consensus 301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 380 (431)
..+++...+.+.|+++.|+.++++.+..+++.|+++|.++...... .+..+.+.|+++.|..++.+.+
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~------------~~~~i~~~G~I~~Lv~LL~s~~ 434 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------------DQEALWDMGAVSMLKNLIHSKH 434 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH------------HHHHHHHHTHHHHHHTTTTCSS
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH------------HHHHHHHCCCHHHHHHHHhCCC
Confidence 4568888899999999999999999999999999999999854332 3666788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 014088 381 TEIYEKAVKILETYWVEE 398 (431)
Q Consensus 381 ~~v~~~a~~~l~~~~~~e 398 (431)
+++++.|.++|.++....
T Consensus 435 ~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 435 KMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999988753
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=273.29 Aligned_cols=369 Identities=20% Similarity=0.206 Sum_probs=300.7
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
.++.|++|.++. +.+++++.++..|+++|.+++...+..+..+.+.|+++.|+++|+++++.++..++.+|.++
T Consensus 94 i~~~g~i~~Lv~------lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 94 IFKSGGIPALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHTTTHHHHHHH------HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHH------HHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 356688999888 55677899999999999999987778888899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhccccchhHHHH-----------------------------------------HHHH
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN-----------------------------------------ATWT 125 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~-----------------------------------------a~~~ 125 (431)
+...++.+..+.+.|+++.|+.++.......++.. ++|+
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 98788889999999999999999965444444444 4455
Q ss_pred HHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHH
Q 014088 126 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI 203 (431)
Q Consensus 126 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 203 (431)
|.+++...+.. ....+.+|.|++++++.+++++..++++|.+++.+.+.....+.+.|+++.|+.++.+. .+.++.
T Consensus 248 L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 248 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 55555443211 12246778888888888999999999999999988777778888999999999999763 368999
Q ss_pred HHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc
Q 014088 204 PALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 280 (431)
Q Consensus 204 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 280 (431)
.++++|++++...+. ....+.+.++++.|+++|.++.++.+++.|+|+|+|++.+. +..+.+++.|+++.|++++.
T Consensus 326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHh
Confidence 999999999875432 23346788999999999998734799999999999999874 44588889999999999998
Q ss_pred cCC----------------------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 281 NAE----------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 281 ~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
+++ .+++..++.+|.+++... .....+.+.|+++.|++++.+.++.++..++++|.
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 482 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 743 345667777777777643 66677889999999999999999999999999999
Q ss_pred HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 014088 339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE 398 (431)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~~l~~~~~~e 398 (431)
++....+ ++..+.+.|+++.|..++++++++++.. +..++..||..|
T Consensus 483 ~l~~~~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 483 ELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHTSHH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHcCHH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9875422 4778899999999999999999999654 455778888766
Q ss_pred C
Q 014088 399 D 399 (431)
Q Consensus 399 ~ 399 (431)
.
T Consensus 550 ~ 550 (644)
T 2z6h_A 550 P 550 (644)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.8e-31 Score=270.21 Aligned_cols=363 Identities=21% Similarity=0.211 Sum_probs=299.6
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 86 (431)
..+.|++|.++. +..++++.++..|+++|.+++...+..+..+.+.|+++.|+++|++++..++..++.+|.++
T Consensus 230 i~~~g~I~~Lv~------lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 230 IFKSGGIPALVN------MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456688888888 55667899999999999999987778888999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHcCChHHHHHHhcccc-----------------------------------------chhHHHHHHHH
Q 014088 87 AGDSPKCRDLVLSNGALMPLLAQFNEHA-----------------------------------------KLSMLRNATWT 125 (431)
Q Consensus 87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~-----------------------------------------~~~~~~~a~~~ 125 (431)
+..+++.+..+.+.++++.|+.++.... +..+++.++|+
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 9888888888888888888887774332 33455566677
Q ss_pred HHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC-cccHH
Q 014088 126 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLI 203 (431)
Q Consensus 126 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~ 203 (431)
|.+++...+.. ....++++.|++++++.+++++..++++|.+++.+.+.....+.+.|+++.|+.++.+ .+ ..++.
T Consensus 384 L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~ 461 (780)
T 2z6g_A 384 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461 (780)
T ss_dssp HHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence 77776654221 1235788999999999999999999999999999887777888889999999999976 33 38999
Q ss_pred HHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc
Q 014088 204 PALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 280 (431)
Q Consensus 204 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 280 (431)
.++++|++++..... ....+...++++.|+++|.++..+.++..|+|+|+|++.. +.....+.+.|+++.|++++.
T Consensus 462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHH
Confidence 999999999875543 2346778899999999999883359999999999999986 555688889999999999997
Q ss_pred cCC----------------------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 281 NAE----------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 281 ~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
+++ .+++..++.+|.+++. .+.....+.+.|+++.|+.++.++++.++..++.+|.
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp HHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred hcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 643 3466678888888875 3467777889999999999999999999999999999
Q ss_pred HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
++....+ ++..+.+.|+++.|..+++++++++++.|.++|.+
T Consensus 619 ~L~~~~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 619 ELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 660 (780)
T ss_dssp HHHTSHH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHhcCHH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9974322 57889999999999999999999997765444433
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.9e-33 Score=266.65 Aligned_cols=327 Identities=16% Similarity=0.176 Sum_probs=267.7
Q ss_pred hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHH
Q 014088 6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALG 84 (431)
Q Consensus 6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~ 84 (431)
...+.|++|.+|. +.+++++.+|..|+++|.|++.++++++..+++.|++|.|+++|+ ++++.+++.++|+|+
T Consensus 39 ~i~~~g~i~~Lv~------lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 39 QVYQLGGICKLVD------LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHHHTTHHHHHHH------HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3457899999999 556788999999999999999988999999999999999999999 789999999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhcc--------c-------cchhHHHHHHHHHHHhhcCCCCCChhh-Hh-hhHHH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLSMLRNATWTLSNFCRGKPQPLFEQ-TR-PALPA 147 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~--------~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~-~~i~~ 147 (431)
|++.+ +..+..+.+ |+++.|++++.. . .++++++.|+|+|+||+.+ +...... .. |++|.
T Consensus 113 nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~ 189 (457)
T 1xm9_A 113 NLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDS 189 (457)
T ss_dssp HHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHH
T ss_pred HHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHH
Confidence 99988 557888888 999999999931 1 3567888999999999987 3222222 23 89999
Q ss_pred HHHhhcC------CChHHHHHHHHHHHHhccCC-----------------------------------------------
Q 014088 148 LERLIHS------NDDEVLTDACWALSYLSDGT----------------------------------------------- 174 (431)
Q Consensus 148 L~~lL~~------~~~~v~~~a~~~L~~l~~~~----------------------------------------------- 174 (431)
|+.++++ .+.+++..++.+|.+++...
T Consensus 190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence 9999985 45678888999999887321
Q ss_pred ---hHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhh---h-HHHh-hcCChHHHHHHhcccchhhHH
Q 014088 175 ---NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ---T-QCII-NHQALPCLLDLLTQNYKKSIK 245 (431)
Q Consensus 175 ---~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~---~-~~~~-~~~~l~~L~~lL~~~~~~~v~ 245 (431)
+...+.+.+.++++.++.+|.+ .++.+++.++++|+|++.++... . +..+ +.++++.|+++|.++ +.+++
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~ 348 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVV 348 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHH
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHH
Confidence 0111223445678888888865 46789999999999999876432 2 3334 689999999999999 99999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
++|+|+|+|++.+ ++ ...++..|+++.|+++|..++ .++...++++|.++..... ++...+.+.|++++|.
T Consensus 349 ~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 349 RSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNII 425 (457)
T ss_dssp HHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHH
Confidence 9999999999985 44 345566789999999998864 3688899999999987654 7888888899999999
Q ss_pred hhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 014088 320 DLLNCP-DPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 320 ~ll~~~-~~~v~~~al~~L~~l~~~~~ 345 (431)
++++++ ++++++.|.++|.+++...+
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999998 89999999999999875543
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.9e-32 Score=260.95 Aligned_cols=328 Identities=20% Similarity=0.200 Sum_probs=266.3
Q ss_pred hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCC-ChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 014088 7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALG 84 (431)
Q Consensus 7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~ 84 (431)
..+.|++|.+|. |..++++.+|..|+++|.|++.+ +++++..+++.|+||.|+.+|++ .+..+++.++++|+
T Consensus 86 V~~~G~Ip~LV~------LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~ 159 (584)
T 3l6x_A 86 VRKLKGIPVLVG------LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLW 159 (584)
T ss_dssp HHHTTHHHHHHH------GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHH------HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 567799999999 66788899999999999999985 68999999999999999999997 67899999999999
Q ss_pred HhcCCChHHHHHHHHcCChHHHHHHhc-----------------cccchhHHHHHHHHHHHhhcCCCC-CChhh-HhhhH
Q 014088 85 NVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPAL 145 (431)
Q Consensus 85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~i 145 (431)
+|+.. +.++..+.+ ++++.|++++. ...+++++++|+++|.||+...+. ..... ..+++
T Consensus 160 nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 160 NLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp HHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred HHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 99985 456777775 57999999872 123679999999999999987643 23232 36788
Q ss_pred HHHHHhhcC------CChHHHHHHHHHHHHhccCChHH-------------------------HHHHHHhCcHHHHHHhc
Q 014088 146 PALERLIHS------NDDEVLTDACWALSYLSDGTNDK-------------------------IQAVIEAGVCPRLVELL 194 (431)
Q Consensus 146 ~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~~~~~~~i~~L~~ll 194 (431)
+.|+.++++ .+.+.++.|+++|.||+...... .+.+.+.++++.++.+|
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 899999874 46789999999999998652111 11122334567788888
Q ss_pred C-CCCcccHHHHHHHHhHhhcCChh----hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088 195 R-HPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269 (431)
Q Consensus 195 ~-~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 269 (431)
. ..++.+++.|+++|+||+.+... ....+.+.++++.|+++|.++ +..++..|+|+|+||+.+. ... ..+..
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~-~~~-~~I~~ 394 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDA-RNK-ELIGK 394 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC-SCH-HHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh-hHH-HHHHh
Confidence 5 46789999999999999987532 222344578899999999999 8999999999999999863 333 34478
Q ss_pred CCHHHHHHHHccC--------CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHH
Q 014088 270 GIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLEN 339 (431)
Q Consensus 270 ~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~ 339 (431)
|+++.|+++|.++ +.++...|+++|.|++.. ++++.+.+.+.|+++.|+++++.. .+.+.+.|.++|++
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n 473 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 8999999999876 357889999999999875 468899999999999999999875 78999999999999
Q ss_pred HHHhhhh
Q 014088 340 ILKAGEA 346 (431)
Q Consensus 340 l~~~~~~ 346 (431)
+..+.+-
T Consensus 474 l~~~~el 480 (584)
T 3l6x_A 474 IWGYKEL 480 (584)
T ss_dssp HHTSHHH
T ss_pred HHcCHHH
Confidence 9876653
No 22
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=6.1e-31 Score=241.16 Aligned_cols=268 Identities=19% Similarity=0.190 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 100 (431)
..+.+|+++|.|++.+ +++|+.+++.|+++.|+.+|.. .++.++..|+|+|.|++..++..+..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5556899999999984 8999999999999999999942 347899999999999998887777777554
Q ss_pred -CChHHHHHHhccccchhHHHHHHHHHHHhhcC-C-CCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChH
Q 014088 101 -GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 101 -~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
|+++.|+++| ++.++++++.|+|+|.||+.. . .........|++|.|+++| ++.++++++.++.+|.|++...++
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 5599999999 678899999999999999985 2 2233444579999999975 567899999999999999985544
Q ss_pred HHHHHH-HhCcHHHHHHhcCCCCc----ccHHHHHHHHhHhhc---CChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088 177 KIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 248 (431)
Q Consensus 177 ~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 248 (431)
....+. ..|+++.|+.+|.++++ +++..++++|.|++. .++..++.+.+.|+++.|+++|.++ +..+++.|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 444455 68999999999987654 489999999999997 5777888899999999999999998 89999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
+|+|+|++..+++.++.+++.|+++.|++++.+++..+++.|+++|.|++....
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999998889999999999999999999999999999999999999998764
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=3.1e-30 Score=253.27 Aligned_cols=359 Identities=19% Similarity=0.196 Sum_probs=296.0
Q ss_pred hhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088 10 CILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89 (431)
Q Consensus 10 ~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 89 (431)
.|++|.++. .|.++++++++..|+.+|.+++. .++.+..+.+.|+++.|+++|+++++.++..++++|.+++.+
T Consensus 58 ~~~i~~Lv~-----~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 58 PQMVSAIVR-----TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131 (529)
T ss_dssp HHHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH-----HHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 367777777 66656688999999999999987 567999999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-hHHHHHHHHHH
Q 014088 90 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-DEVLTDACWAL 167 (431)
Q Consensus 90 ~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L 167 (431)
.+..+..+.+.|+++.+++++ .+++++++..++.+|.+++...+. .......++++.++.++++.+ ...+..++.+|
T Consensus 132 ~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L 210 (529)
T 1jdh_A 132 QEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210 (529)
T ss_dssp CTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcchHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHH
Confidence 666788888999999999999 667889999999999999986422 233344688999999998764 55677789999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 247 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 247 (431)
.+++..+. ....+.+.|+++.++.++.++++.++..+++++.+++...+... ...++++.|++++.++ +++++..
T Consensus 211 ~~l~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~-~~~v~~~ 285 (529)
T 1jdh_A 211 KVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSD-DINVVTC 285 (529)
T ss_dssp HHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCS-CHHHHHH
T ss_pred HHHhcCcc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCC-CHHHHHH
Confidence 99997654 44668888999999999999999999999999999998654321 1236799999999888 9999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcC
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN 323 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~ 323 (431)
|+|+|++++..+++.+..+.+.|+++.|++++... ++.++..|+++|+|++..... .....+.+.|+++.|.++++
T Consensus 286 a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~ 365 (529)
T 1jdh_A 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence 99999999998888999999999999999999763 479999999999999876432 24567788999999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 324 CPD-PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 324 ~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
+++ +.++..++++|.++....+. ...+.+.|+++.|..++.++++++++.|.+.+.+
T Consensus 366 ~~~~~~v~~~a~~~l~nl~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 366 PPSHWPLIKATVGLIRNLALCPAN-------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSGGG-------------HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred cccchHHHHHHHHHHHHHhcChhh-------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 876 59999999999999864332 3556678999999999888889999888877765
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.4e-30 Score=236.23 Aligned_cols=274 Identities=19% Similarity=0.185 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088 71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ 140 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 140 (431)
+....+..|+|+|.|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.|++.+....+...
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456666899999999987 6789999999999999999942 2357899999999999998763233322
Q ss_pred --HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCC
Q 014088 141 --TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 141 --~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~ 216 (431)
..+.+|.|+.+|++++++++..++++|.|++.. ++.....+.+.|+++.|+++| ++.+..++..++.+|+||+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 356799999999999999999999999999985 455667788999999999975 6678899999999999999866
Q ss_pred hhhhHHHh-hcCChHHHHHHhcccchh---hHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHH
Q 014088 217 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 289 (431)
Q Consensus 217 ~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 289 (431)
+.....+. ..|+++.|+++|.+..+. ++++.|+|+|.|++. .+++.++.+.+.|+++.|+++|.+++..++++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 55555565 789999999999877222 599999999999997 67899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
|+++|.|++.. ++++...+.+.|+++.|+++++++++.+++.|+++|.+++.....
T Consensus 283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999864 468888999999999999999999999999999999999986443
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=253.27 Aligned_cols=369 Identities=16% Similarity=0.175 Sum_probs=306.2
Q ss_pred chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-CChHHHHHhhCC-CCHHHHHHHHHH
Q 014088 5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-PTDDVREQAVWA 82 (431)
Q Consensus 5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~ 82 (431)
+..++.|.+|.++. +.+++++.+|..|+.+|.+++... ..+..+... |+++.|++.|.+ .++.++..++.+
T Consensus 8 ~~~~~~g~i~~Lv~------lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 8 DAELATRAIPELTK------LLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 80 (644)
T ss_dssp ----CTTTHHHHHH------HHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhhhhhchHHHHHH------HHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44567899999999 556788999999999999999855 466666654 899999999986 489999999999
Q ss_pred HHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC-hhhHhhhHHHHHHhhcCCChHHHH
Q 014088 83 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLT 161 (431)
Q Consensus 83 L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~ 161 (431)
|.+++... +.+..+.+.|+++.|+++| .++++.++..|+++|.+++...+... .....+++|.|++++++++++++.
T Consensus 81 L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~ 158 (644)
T 2z6h_A 81 LHNLSHHR-EGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158 (644)
T ss_dssp HHHHTTSH-HHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHH
T ss_pred HHHHhcCh-hhHHHHHHcCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHH
Confidence 99999875 4788899999999999999 67789999999999999998753333 333489999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088 162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 240 (431)
Q Consensus 162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 240 (431)
.++.+|.+++...+.....+.+.|+++.|+.++++.+ ..++..++.+|.+++.. +..+..+++.|+++.|++++.+.
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~- 236 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDP- 236 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCS-
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcC-
Confidence 9999999999877777777889999999999998764 46778899999999974 45677888999999999999998
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 320 (431)
+..++..++|+|.|++...+.. ....++++.|++++.+++.+++..|+++|.+++... ++....+.+.|+++.|++
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVR 312 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHH
Confidence 8999999999999999753321 112367999999999999999999999999998854 577788889999999999
Q ss_pred hcCCC--CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCC
Q 014088 321 LLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVKILETYWVE 397 (431)
Q Consensus 321 ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~ 397 (431)
++... .+.++..++++|.++.......+. ....+.+.|+++.|..++.+++ +++++.|.++|.++...
T Consensus 313 lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~---------~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 313 TVLRAGDREDITEPAICALRHLTSRHQEAEM---------AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH---------HHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcCCchHHH---------HHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 99753 379999999999999754222111 2444667899999999988765 79999999999988764
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=6e-28 Score=245.75 Aligned_cols=373 Identities=20% Similarity=0.194 Sum_probs=300.5
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
|+++.++. .|.+++++.++..|+.+|.+++. ..+.+..+.+.|+++.|+.+|+++++.++..|+++|.+++...
T Consensus 192 ~~i~~Lv~-----~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 192 QMVSAIVR-----TMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHH-----HHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 66666666 66656689999999999999987 4677888999999999999999999999999999999999877
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHH
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD-EVLTDACWALS 168 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~ 168 (431)
+..+..+.+.|+++.|+.++ .+.+.+++..++.+|.+++...+. .......+.++.|+.++++.+. ..+..++.+|.
T Consensus 266 ~~~~~~v~~~g~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~ 344 (780)
T 2z6g_A 266 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344 (780)
T ss_dssp TTHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888999999999999 567889999999999999975422 2222346889999999997754 45667899999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088 169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 248 (431)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 248 (431)
+++.... ....+++.|+++.|+.++.+.+..++..++++|.+++...... ....++++.|++++.+. ++.++..|
T Consensus 345 ~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~-d~~vr~~A 419 (780)
T 2z6g_A 345 VLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCA 419 (780)
T ss_dssp HHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCC-CHHHHHHH
Confidence 9997654 4566888899999999999999999999999999999765431 11236789999999988 99999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-C-HhHHHHHHHHHHHhcCCCCH-H-HHHHHHHCCChHHHHhhcCC
Q 014088 249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-E-FEIKKEAAWAISNATSGGSN-E-QIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~-~~v~~~a~~aL~~l~~~~~~-~-~~~~l~~~~~l~~L~~ll~~ 324 (431)
+|+|++++..+++.+..+++.|+++.|++++... + ..++..|+++|++++..... + ....+...++++.|+++++.
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 9999999998888899999999999999999873 3 48999999999999875432 2 23466788999999999987
Q ss_pred CCH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCc-----------------------------------------------
Q 014088 325 PDP-RIVTVCLEGLENILKAGEAEKNMGNTGGV----------------------------------------------- 356 (431)
Q Consensus 325 ~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~----------------------------------------------- 356 (431)
.+. .++..++++|.|+...........+.+..
T Consensus 500 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~L 579 (780)
T 2z6g_A 500 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL 579 (780)
T ss_dssp TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHH
Confidence 764 99999999999997432221100000000
Q ss_pred ---chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 357 ---NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 357 ---~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
...+..+.+.|+++.|..++.+++++++..|..+|..+.
T Consensus 580 a~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp TTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 001123667889999999999999999999888777654
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.8e-27 Score=210.43 Aligned_cols=240 Identities=27% Similarity=0.399 Sum_probs=218.6
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
|.+|.++. +| .++++++|..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..++++|++++...
T Consensus 2 ~~i~~L~~-----~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 2 NDVEKLVK-----LL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp CHHHHHHH-----HT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHH-----HH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 46777777 44 5666999999999999999988889999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 169 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 169 (431)
+..+..+.+.|+++.++.++ .+++++++..++++|.+++... .........++++.+++++++++++++..++++|.+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999999 6788999999999999999754 333334457899999999999999999999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088 170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249 (431)
Q Consensus 170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 249 (431)
++...+...+.+.+.|+++.|+.++.++++.++..++++|++++..++...+.+.+.|+++.|++++.++ ++.++..|+
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~ 233 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQ 233 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHH
Confidence 9998887778888999999999999999999999999999999998888888899999999999999988 899999999
Q ss_pred HHHHHhhcC
Q 014088 250 WTISNITAG 258 (431)
Q Consensus 250 ~~L~nl~~~ 258 (431)
++|+|++..
T Consensus 234 ~~L~~l~~~ 242 (252)
T 4hxt_A 234 RALENIKSG 242 (252)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999999974
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.1e-27 Score=208.92 Aligned_cols=241 Identities=28% Similarity=0.433 Sum_probs=222.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 137 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 137 (431)
|.++.|+++|+++++.++..++++|.+++...+..+..+.+.|+++.+++++ .+.+++++..++++|++++.+. ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6789999999999999999999999999998888899999999999999999 6678999999999999999885 3334
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
.....++++.++.++++++++++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++..++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44457899999999999999999999999999998777777888899999999999999999999999999999999888
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.....+.+.++++.|++++.++ ++.++..|+++|++++..+++..+.+.+.|+++.|++++.+++++++..|+++|.++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 7878888999999999999988 899999999999999998899999999999999999999999999999999999999
Q ss_pred cCCC
Q 014088 298 TSGG 301 (431)
Q Consensus 298 ~~~~ 301 (431)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1.4e-27 Score=211.13 Aligned_cols=238 Identities=33% Similarity=0.512 Sum_probs=215.0
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 91 (431)
..+.++. .| +++++++|..|+++|.++...+.+.+..+.+.|+++.|+++|+++++.++..++++|++++...+
T Consensus 13 ~~~~~~~-----~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 13 ELPQMTQ-----QL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp SHHHHHH-----HH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHH-----HH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4555555 44 56778999999999988766577888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
..+..+.+.|+++.++.++ +++++.++..++++|++++.+.+.. ......+++|.|+++++++++.++..++++|.++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999 6678999999999999999886444 4455578999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
+...+.....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|++++.+. ++.++..|+|
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHH
Confidence 998888878888899999999999999999999999999999988888888889999999999999998 9999999999
Q ss_pred HHHHhhc
Q 014088 251 TISNITA 257 (431)
Q Consensus 251 ~L~nl~~ 257 (431)
+|+|++.
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9999974
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=8.4e-27 Score=206.20 Aligned_cols=239 Identities=35% Similarity=0.516 Sum_probs=217.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 137 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 137 (431)
...+.+.+.|+++++.++..++++|.++....+..+..+.+.|+++.|+++| ++++++++..++++|.+++.+. ....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4689999999999999999999999887655666788899999999999999 6677999999999999999865 3333
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
.....+++|.++.++++++++++..++++|.+++.+.+.....+.+.|+++.|+.++.++++.++..++++|++++..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 44457899999999999999999999999999999988776778899999999999999999999999999999999888
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
.....+.+.++++.|++++.++ ++.++..|+++|+|++..+++....+.+.|+++.|++++.+++++++..|+++|.++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888999999999999998 999999999999999988899999999999999999999999999999999999999
Q ss_pred cC
Q 014088 298 TS 299 (431)
Q Consensus 298 ~~ 299 (431)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=8.9e-26 Score=201.44 Aligned_cols=236 Identities=16% Similarity=0.154 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088 157 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 235 (431)
Q Consensus 157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 235 (431)
.+-+..|+..|.+++.+.+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..++.+++.|+++.|+++
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4568889999999998764 4456788899999999 9999999999999999999999999888999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 014088 236 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 315 (431)
Q Consensus 236 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 315 (431)
|+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. .++....+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999998888888899999999999999999999999999999999976 45788889999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 014088 316 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY 394 (431)
Q Consensus 316 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~ 394 (431)
+.|+.+++.+++++++.++.+|.+++.........+. ...+.+...|.+. +..++.++ +.++++.|..++++|
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987443221100 0012245555543 66667666 899999999999999
Q ss_pred cCCCCC
Q 014088 395 WVEEDE 400 (431)
Q Consensus 395 ~~~e~~ 400 (431)
|.++++
T Consensus 286 f~~~~~ 291 (296)
T 1xqr_A 286 FSSPAD 291 (296)
T ss_dssp CC----
T ss_pred cCCCCC
Confidence 987554
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.8e-23 Score=179.41 Aligned_cols=200 Identities=32% Similarity=0.469 Sum_probs=178.1
Q ss_pred hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088 8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87 (431)
Q Consensus 8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 87 (431)
...|..|.++. |.++++++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..++++|++++
T Consensus 9 ~~~~~~~~l~~------LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 9 HHGSELPQMVQ------QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ----CHHHHHH------HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHH------HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34466666666 556788999999999999999888999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088 88 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWA 166 (431)
Q Consensus 88 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 166 (431)
...+..+..+.+.|+++.++.+| ++.++.++..++|+|++++.+.+.. ......+++|.|++++++++++++..++++
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 88888899999999999999999 7778999999999999999865322 233457899999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999877777888899999999999999999999999999999975
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=3.6e-23 Score=177.48 Aligned_cols=198 Identities=39% Similarity=0.600 Sum_probs=184.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
.+..+.+..++++++++++..++++|.+++...+.....+.+.|+++.++.+|.++++.++..++++|++++..++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 57888999999999999999999999999988888888899999999999999999999999999999999988888888
Q ss_pred HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
.+++.|+++.|+++|.++ ++.++..|+|+|+|++..+++....+++.|+++.|++++.+++..++..|+++|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999 9999999999999999988898899999999999999999999999999999999999854
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
++....+.+.|+++.|..++++++++++..|+++|.++.
T Consensus 170 -~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 170 -NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 577788889999999999999999999999999999885
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-22 Score=196.83 Aligned_cols=347 Identities=16% Similarity=0.150 Sum_probs=265.8
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH-cCChHHHHHH
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQ 109 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~l~~~ 109 (431)
..+|..|+.+|.++..........+. ...+.+.+.|.+++..-+..|++.|..++.+.. .+..+.. .+++..|+.+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTM 384 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHH
Confidence 58999999999998763322211111 256777888887776669999999999988765 4555555 5559999999
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCCCC---------------------------------------hhhHhhhHHHHHH
Q 014088 110 FNEHAKLSMLRNATWTLSNFCRGKPQPL---------------------------------------FEQTRPALPALER 150 (431)
Q Consensus 110 l~~~~~~~~~~~a~~~L~~l~~~~~~~~---------------------------------------~~~~~~~i~~L~~ 150 (431)
+....+..+..-++.+|.|++.+.+... .....|++|.|+.
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 9655778899999999999998653210 0112689999999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcc---cHHHHHHHHhHhhcCChhhhHHHhh--
Q 014088 151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN-- 225 (431)
Q Consensus 151 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~-- 225 (431)
++.++++.++..++++|.+++.+. .....+++.|+++.|+.++.+.... .+..|+.+|.++....+... ++.
T Consensus 465 Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~ 541 (778)
T 3opb_A 465 EMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKY 541 (778)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSS
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCC
Confidence 999999999999999999999775 4556688899999999999886544 78999999999985443221 221
Q ss_pred --cCChHHHHHHhcccchh-------------hHHHHHHHHHHHhhcCC----HHHHHHHHHh-CCHHHHHHHHccCCHh
Q 014088 226 --HQALPCLLDLLTQNYKK-------------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFE 285 (431)
Q Consensus 226 --~~~l~~L~~lL~~~~~~-------------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~ 285 (431)
.++++.|+++|...... .-+.+|+.+|.|++..+ .+.++.+++. |+++.|.+++.+++..
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 38899999999831111 12779999999999864 3456778884 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHH-HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch
Q 014088 286 IKKEAAWAISNATSGGSNEQI-KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 358 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~-~~l~~~------~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 358 (431)
+|+.|+++++|++... +.. ..+... +.++.|+.+++.++.+++..|.++|.++....+..
T Consensus 622 VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------- 688 (778)
T 3opb_A 622 LQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------- 688 (778)
T ss_dssp HHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------
Confidence 9999999999999754 332 233221 13778999999999999999999999996544332
Q ss_pred HHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 014088 359 FAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV 396 (431)
Q Consensus 359 ~~~~l~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~ 396 (431)
...++...++++.+..+..+ ++++++.++..++.+++.
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 24555556899999999777 899999999999999886
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.5e-22 Score=179.19 Aligned_cols=187 Identities=18% Similarity=0.196 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHH
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 109 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~ 109 (431)
.+-+..|+..|.+++. +.++...+...|++|.|+. +|+++++.++..|+|+|++++.+++..+..+.+.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3678899999999998 6678888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 014088 110 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 188 (431)
Q Consensus 110 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 188 (431)
|..+++..+++.|+|+|++++++.+. .......+++|.|+.+|++++..++..++|+|.+++.+.++.++.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 96556889999999999999988633 23344478999999999999999999999999999988888888899999999
Q ss_pred HHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088 189 RLVELLRHPSPSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 218 (431)
.|+.+|.++++.++..++++|++++...+.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999987543
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-22 Score=196.63 Aligned_cols=318 Identities=14% Similarity=0.098 Sum_probs=251.2
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCh------
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP------ 91 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~------ 91 (431)
.++++|.++ +.+.+..|++.|..++. .++.|+.+++. |+++.|++++++ .+..+...++.+|.|++...+
T Consensus 338 ~~~~~L~~~-~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 338 IFINAISRR-IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHTTTC-CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 455566644 44569999999999998 67888888765 679999999995 778899999999999986322
Q ss_pred -------------------------------H-HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 92 -------------------------------K-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 92 -------------------------------~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
+ .+..+.+.|+++.|+.++ .+.++.++..++|+|.+++.+...+...
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~l 494 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQL 494 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 356778899999999999 7788999999999999999886555556
Q ss_pred hHhhhHHHHHHhhcCCChH---HHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhcCC-CCcc------------
Q 014088 140 QTRPALPALERLIHSNDDE---VLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLRH-PSPS------------ 200 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~~------------ 200 (431)
...|+++.|+.++.+.... .+..|+.+|.++....+...- +-. .++++.|+.+|.. +...
T Consensus 495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~-f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI-FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH-SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH-cCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 6689999999999977544 899999999999854432221 111 3889999999983 2211
Q ss_pred -cHHHHHHHHhHhhcCCh----hhhHHHhhc-CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH-HHHHH-----
Q 014088 201 -VLIPALRTVGNIVTGDD----MQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIE----- 268 (431)
Q Consensus 201 -v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~----- 268 (431)
-+..|+.+|.||+..++ ..++.++.. ++++.|.++|.++ +..+|+.|+++++|++.. ++.+ +.+.+
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCch
Confidence 16789999999999762 345667775 8999999999988 899999999999999985 4432 23322
Q ss_pred -hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 014088 269 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 269 -~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~ 344 (431)
.+.++.|+.++..++.++|+.|.++|++++... +..++.+++. ++++.++.+++. ++++++..++.++.|++...
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 123788999999999999999999999996533 3566777776 789999999987 89999999999999999743
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=167.25 Aligned_cols=197 Identities=18% Similarity=0.118 Sum_probs=167.0
Q ss_pred hhhhhhHHHHHhhhccCCCh--HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088 12 LISLFVDQFFFHCFFSCCFG--AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 89 (431)
.+|.+|. +.+++++ ++|..|+++|.+++..+++.+..+++.|+||.|+++|+++++.+++.|+|+|.||+.+
T Consensus 9 ~i~~lV~------lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 9 TLERAVS------MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CHHHHHH------TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHH------HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4566666 4456667 8999999999999988899999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----------------
Q 014088 90 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------------- 153 (431)
Q Consensus 90 ~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---------------- 153 (431)
+++++..+.+.|++++|+++|.++.+.++++.++.+|++|+...... .....+.+|.|+.++.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccc
Confidence 88899999999999999999965678999999999999999875333 3333567898887653
Q ss_pred CCChHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcC
Q 014088 154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 154 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 215 (431)
..+++++.++..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.++.+|.||++.
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1367999999999999998876666767765 778999999864 3567889999999999874
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=152.26 Aligned_cols=197 Identities=17% Similarity=0.196 Sum_probs=168.2
Q ss_pred hhHHHHHHhhcCCCh--HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh
Q 014088 143 PALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 220 (431)
Q Consensus 143 ~~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 220 (431)
-.+|.++++|+++++ +++..+++++.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|.|++..++.++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999999988 899999999999998777777789999999999999999999999999999999999888888
Q ss_pred HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc----------------cCCH
Q 014088 221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL----------------NAEF 284 (431)
Q Consensus 221 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----------------~~~~ 284 (431)
..+.+.|+++.|+++|.+..+.++++.|+.+|.||+.. ++.+..+.+. .++.|++++. ..+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998532789999999999999876 4556666664 5888888653 1256
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 014088 285 EIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNC------PDPRIVTVCLEGLENILK 342 (431)
Q Consensus 285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~ 342 (431)
+++.+|..+|.|++..+ ++.++.+.+. |+++.|+.+++. .+.+.++.++.+|.|+..
T Consensus 166 ~v~~na~~~L~nLss~~-~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAG-ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHTTSC-HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 89999999999999864 5778888775 678999999874 256889999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.75 E-value=1.1e-16 Score=158.79 Aligned_cols=334 Identities=12% Similarity=0.124 Sum_probs=245.9
Q ss_pred ccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHcCChH
Q 014088 26 FSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALM 104 (431)
Q Consensus 26 ~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~ 104 (431)
.+++++.+|..++.+|+.++..... ......+++.++.+++++++.+|..++++|+.++...+ ..+........++
T Consensus 251 ~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 327 (588)
T 1b3u_A 251 AEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327 (588)
T ss_dssp HTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 3456678999999999988752111 12234578999999999999999999999999985432 1111122234567
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.+..++ .++++.+|..++++|..++..-+. ......++|.+..++++.+++++..++.++..+....... ....
T Consensus 328 ~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~ 401 (588)
T 1b3u_A 328 CIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQ 401 (588)
T ss_dssp HHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHH
Confidence 777777 778899999999999998764211 1223568899999999999999999999998887543321 1123
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQI 263 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~ 263 (431)
.+++.+..++.+.++.++..++.+++.++...... .....+++.+...+.++ +..+|..|+.+++.++.. .++
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~-- 475 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE-- 475 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch--
Confidence 57788888888889999999999999987532111 11224678888899888 899999999999999863 222
Q ss_pred HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
.....++|.+..++.++++.+|..++++++.++...+.+ .....+++.|..+++++++.++..++++|..+...
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 122457888888888889999999999999997643211 12345889999999999999999999999999865
Q ss_pred hhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 344 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
.+.. + + ....++.|..+.++++++++..|..++..+-
T Consensus 550 ~~~~-----------~---~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 550 LDNS-----------T---L-QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp SCHH-----------H---H-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hchh-----------h---h-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 4321 1 1 1345667778889999999999999998764
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=1e-16 Score=165.95 Aligned_cols=355 Identities=15% Similarity=0.141 Sum_probs=251.0
Q ss_pred hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088 15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
..+++.+++.|. ++++.+|..++.+++.++...... .-.+.++.|++.+.++++.+++.++.+|+.++...+...
T Consensus 89 ~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 89 DFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 345556666765 566799999999999998633110 113689999999999999999999999999986443211
Q ss_pred HHHH----HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 95 DLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 95 ~~i~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
..-. -...++.+++.+ .++++.+|..|++++..+....+.........+++.+..++.+++++++..++++|..+
T Consensus 164 ~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1000 012355556666 57789999999999998876543222223357889999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh---cCChHHHHHHh-----------
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLL----------- 236 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~L~~lL----------- 236 (431)
+...+........ ++++.+...+.+.++.++..++.++..++.... . ...+. ..+++.+++.+
T Consensus 243 ~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 243 LEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 9876654433333 577888888888889999999999999886432 1 11221 13456666665
Q ss_pred cc--c--------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088 237 TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306 (431)
Q Consensus 237 ~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 306 (431)
.+ . .+..+|..|+.+++.++...++ .++. .+++.+.+.+.++++.+|..|++++++++........
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH
Confidence 22 0 1345799999999999863221 1222 3677788888888999999999999999987643222
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 386 (431)
Q Consensus 307 ~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 386 (431)
.. -.++++.+...++++++.++..+++++.++......... ...+ .+.++.|...+.+++++++..
T Consensus 396 ~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----------~~~~--~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 396 PY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----------DTYL--KPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp GG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----------TTTH--HHHHHHHHHHHTCSSHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----------HHHH--HHHHHHHHHHHhCCCHHHHHH
Confidence 22 234788999999999999999999999999875433110 1111 234566777777889999999
Q ss_pred HHHHHHHhcC
Q 014088 387 AVKILETYWV 396 (431)
Q Consensus 387 a~~~l~~~~~ 396 (431)
|.+++..+..
T Consensus 462 a~~aL~~l~~ 471 (852)
T 4fdd_A 462 ACSAFATLEE 471 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=4.2e-17 Score=168.84 Aligned_cols=313 Identities=13% Similarity=0.147 Sum_probs=223.6
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHH-HH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRV-VI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 96 (431)
+++.+ .++++.++..++.+|+.++...++.... .. -..+++.++++++++++.+|..|+++|.++....+.....
T Consensus 133 L~~~l-~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 133 LCSLL-DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHH-SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33355 4567899999999999998643322111 00 1246778888888899999999999999988654321110
Q ss_pred HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088 97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176 (431)
Q Consensus 97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 176 (431)
. -...++.+...+ .+++++++..++++|..++...+.........+++.+..++.+.+++++..++.++..++.....
T Consensus 212 ~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 212 H-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp S-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred H-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 0 113566777777 67889999999999999998754332234467888899999999999999999999999876422
Q ss_pred HHHHHHH---hCcHHHHHHhc-----------CC-----------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHH
Q 014088 177 KIQAVIE---AGVCPRLVELL-----------RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 231 (431)
Q Consensus 177 ~~~~~~~---~~~i~~L~~ll-----------~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 231 (431)
. + ... ..+++.++..+ .+ .+..++..+..++..++...+.. ++ ..+++.
T Consensus 290 ~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~ 363 (852)
T 4fdd_A 290 K-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPL 363 (852)
T ss_dssp H-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHH
T ss_pred H-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHH
Confidence 1 1 111 14556666666 23 23467889999999998644322 11 146778
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH-HHHHHH
Q 014088 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLV 310 (431)
Q Consensus 232 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~ 310 (431)
+.+.+.++ ++.+|..|++++++++.+..+...... .++++.++..+.++++.||..|++++++++....+. ....
T Consensus 364 l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-- 439 (852)
T 4fdd_A 364 LKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-- 439 (852)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--
Confidence 88888888 899999999999999987665444333 347899999999999999999999999997532100 0011
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 311 ~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
-.++++.|...++..++.++..++++|.++++....
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 123577888888888999999999999999976553
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.71 E-value=9.8e-16 Score=151.96 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=220.2
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+..++++.+|..|+.+|.+++...+.. .....+++.+..+.++++..+|..++.+++.++...+.. .....++
T Consensus 95 l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~ 167 (588)
T 1b3u_A 95 LATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQ 167 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHH
Confidence 445667899999999999998754432 122245777777778888899999999999887654321 1122456
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.+..++ .++++.+|..++.+|..++...+. ......++|.+..+++++++.+|..++.++..++...+.. ....
T Consensus 168 ~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~ 241 (588)
T 1b3u_A 168 YFRNLC-SDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEA 241 (588)
T ss_dssp HHHHHH-TCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHH
Confidence 666666 788999999999999999876421 2334678999999999999999999999999988654322 1223
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQI 263 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~ 263 (431)
.+++.+..++.++++.+|..++.+++.++...+. ......+++.+.+++.++ ++.+|..|+++++.++.... +..
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhh
Confidence 5778888888889999999999999999864221 122346789999999988 89999999999999987322 211
Q ss_pred HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
.......++|.+..++.++++.+|..++++|..++.....+. ....+++.+..+++++++.++..++.++..+...
T Consensus 318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 112234578889999999999999999999999875433221 1223678888888888888998888888877654
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.70 E-value=1.2e-15 Score=136.53 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=196.2
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
+.++.++. .| .++++.+|..|+++|+++.. .+.++.|+.+|+++++.+|..++++|+.+....
T Consensus 23 ~~i~~L~~-----~L-~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~ 85 (280)
T 1oyz_A 23 LNDDELFR-----LL-DDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK 85 (280)
T ss_dssp SCHHHHHH-----HT-TCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT
T ss_pred hhHHHHHH-----HH-HcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Confidence 45566666 55 56789999999999999873 146889999999999999999999999987433
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
.... . .++.+...+..++++.++..++++|+.+....+ ......++.+..+++++++.++..++++|+++
T Consensus 86 ~~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 86 KCED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp TTHH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ccch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 2211 1 223343333377889999999999999975421 12346789999999999999999999999987
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
.. .+.++.|+.++.++++.++..++++|+.+....+ ..++.|.+.+.++ ++.+|..|++
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~ 214 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAII 214 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHH
Confidence 53 2578999999999999999999999999853322 3467889999888 8999999999
Q ss_pred HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHH
Q 014088 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRI 329 (431)
Q Consensus 251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v 329 (431)
+|+++.. ...++.|+..+.+++ ++..|+++|+.+.. ...++.|.++++. +++++
T Consensus 215 aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~ 269 (280)
T 1oyz_A 215 GLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEI 269 (280)
T ss_dssp HHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHH
T ss_pred HHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHH
Confidence 9999862 247888899888754 88999999999853 1367888888864 56677
Q ss_pred HHHHHHHHH
Q 014088 330 VTVCLEGLE 338 (431)
Q Consensus 330 ~~~al~~L~ 338 (431)
...+...|.
T Consensus 270 ~~~~~~~l~ 278 (280)
T 1oyz_A 270 ITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 777776664
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=4.9e-15 Score=141.36 Aligned_cols=317 Identities=12% Similarity=0.122 Sum_probs=243.4
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChH---------
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPK--------- 92 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~--------- 92 (431)
.+.++.-.+-|+.|+..|..++.. .+..+. .++++.|+..|+. .+.++...++.+|.++....+.
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~ 104 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTR 104 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----------
T ss_pred HHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccc
Confidence 677777789999999999999863 444444 4679999999976 6789999999999887643321
Q ss_pred --------HH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChh-h-HhhhHHHHHHhhcCCChHHH
Q 014088 93 --------CR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFE-Q-TRPALPALERLIHSNDDEVL 160 (431)
Q Consensus 93 --------~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~-~-~~~~i~~L~~lL~~~~~~v~ 160 (431)
+. ..+.+.+.++.|+.+| ++.+-.+|.+++.+|..++...+. .+.. . ..++++.|+.+|.++...+|
T Consensus 105 ~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iR 183 (651)
T 3grl_A 105 QSEDLGSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIR 183 (651)
T ss_dssp ---CHHHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHH
T ss_pred cchHHHHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHH
Confidence 11 1234567799999999 788999999999999999988744 2222 2 25899999999999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc----ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh
Q 014088 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 236 (431)
Q Consensus 161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 236 (431)
..++..|.+++.++++..+.+.-.|+++.|+.++..+.. .+...|+.++.||...+..+...+.+.++++.|..++
T Consensus 184 neallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 184 NDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 999999999999998776666666999999999977443 6778899999999999998888888999999999999
Q ss_pred cccchh------hHH--HHHHHHHHHhhcC------CHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCC
Q 014088 237 TQNYKK------SIK--KEACWTISNITAG------NVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 300 (431)
Q Consensus 237 ~~~~~~------~v~--~~a~~~L~nl~~~------~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 300 (431)
+.+.+. +++ ..+..++.-++.. +..+...+.+.|+++.|++++... ...++..|+.+++.++..
T Consensus 264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence 755211 111 1245555556553 335667888999999999999876 678999999999999987
Q ss_pred CCHHHHHHHHHCC---------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhh
Q 014088 301 GSNEQIKFLVSQG---------CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 301 ~~~~~~~~l~~~~---------~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~ 346 (431)
+ +.....+.+.. ++..|..++.+. ...++..++.++..++.....
T Consensus 344 N-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 344 C-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp C-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred C-HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 6 35555555533 233344556544 468899999999999877653
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=5.1e-14 Score=134.39 Aligned_cols=373 Identities=12% Similarity=0.138 Sum_probs=264.8
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChH-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSE-NTRVVIDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+.++.++. |.++++-.+|..++.+|..++...++ .++.+... ++++.|+.+|+++.+.+|..++..|.+++.
T Consensus 122 ~~i~~Ll~------lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLS------LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHH------HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHH------HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 45666666 45677889999999999999987766 77888855 999999999999999999999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHhhcCCChH------
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------ 158 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~------ 158 (431)
++++.++.+.-.|+++.|+.++.... ...+...++.++.+|.++++ ........+.+|.|..+++.++..
T Consensus 196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Q 275 (651)
T 3grl_A 196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275 (651)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHH
T ss_pred CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHH
Confidence 99999999999999999999995322 34788899999999999974 334455588999999999754321
Q ss_pred HHHH---HHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088 159 VLTD---ACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ 227 (431)
Q Consensus 159 v~~~---a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (431)
...+ ++.++.-+.... ......+.+.|+++.+++++..+ ...++..|+.+++.+..+++.....+....
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 2233 555555555431 23445688899999999998765 467889999999999999987776665432
Q ss_pred ---------ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh----------CC---HHHHHHHHccCCHh
Q 014088 228 ---------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFE 285 (431)
Q Consensus 228 ---------~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~ 285 (431)
++..|+.++.+.....+|..|+.++.....++++....++.. .. -..+..-+.+.++-
T Consensus 356 vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~ 435 (651)
T 3grl_A 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSL 435 (651)
T ss_dssp ESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHH
T ss_pred CCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchH
Confidence 233344445555468999999999999999888766555542 00 11234444455553
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHH--------C---CChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 014088 286 IKKEAAWAISNATSGGSNEQIKFLVS--------Q---GCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNT 353 (431)
Q Consensus 286 v~~~a~~aL~~l~~~~~~~~~~~l~~--------~---~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 353 (431)
-.--|+.++.++...+ ++....+.+ . ..++.+..++.. .++.++..-+..|...+..+...
T Consensus 436 ~~wfAavil~hll~~n-~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------ 508 (651)
T 3grl_A 436 SNWCAAVALAHALQEN-ATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------ 508 (651)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------
Confidence 3345777888888765 233333222 1 115555666643 45666655566666666554433
Q ss_pred CCcchHHHHHHhhccHHHHHHhhcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 014088 354 GGVNLFAQAIDDAEGLEKIENLQSH--D--NTEIYEKAVKILETYWVEEDED 401 (431)
Q Consensus 354 ~~~~~~~~~l~~~~~~~~l~~l~~~--~--~~~v~~~a~~~l~~~~~~e~~~ 401 (431)
+..++.+...++.|.+...+ . +.-|+-.+.-+|..++...+++
T Consensus 509 -----V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 509 -----VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp -----HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred -----HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 56778777778888866432 2 3457888888888877766554
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.68 E-value=2.6e-14 Score=141.28 Aligned_cols=294 Identities=16% Similarity=0.184 Sum_probs=210.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 106 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l 106 (431)
.++++.+|..|+++|+++.. ++.... +++.+.+++.++++.+|..|++++.+++...++. +...+.++.+
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l 165 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSL 165 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHH
Confidence 46778999999999988863 443333 4678999999999999999999999998755542 2223567888
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088 107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 185 (431)
Q Consensus 107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 185 (431)
..+| .++++.++..|+++|..++...+.. ........++.++..+.+.++-.+..++.++..+....+.... .
T Consensus 166 ~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~ 239 (591)
T 2vgl_B 166 RDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----S 239 (591)
T ss_dssp HHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----H
T ss_pred HHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----H
Confidence 8888 7889999999999999999886533 2333456677888888888888999999999888865543322 4
Q ss_pred cHHHHHHhcCCCCcccHHHHHHHHhHhhcC---ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH-
Q 014088 186 VCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN- 261 (431)
Q Consensus 186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~- 261 (431)
+++.+..++++.++.|+..|++++..+... ++...+.+. ..+.+.|+.++. + ++.+|..|+.+++.+....++
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHH
Confidence 677888889999999999999999998742 233333222 245566665553 4 677777777777776631111
Q ss_pred -----------------HHH----HHH---Hh----CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088 262 -----------------QIQ----AII---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 313 (431)
Q Consensus 262 -----------------~~~----~l~---~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 313 (431)
.+. .+. +. .+++.|...+.+.+.+++..++++|+.++.... .... .
T Consensus 317 ~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~-----~ 390 (591)
T 2vgl_B 317 LKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAE-----R 390 (591)
T ss_dssp TTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHH-----H
T ss_pred HHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-hHHH-----H
Confidence 001 010 11 245566677777789999999999999988653 2222 2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
+++.|.++++.....+...++.++..+++...
T Consensus 391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 57888888888888888888888888876543
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=8.2e-15 Score=131.12 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=196.8
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 014088 56 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 135 (431)
Q Consensus 56 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 135 (431)
.+.+.++.|+..|+++++.+|..|+++|+++.. + +.++.++..+ .++++.++..++++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence 345789999999999999999999999999862 2 2467888888 77889999999999999864321
Q ss_pred CChhhHhhhHHHHH-HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088 136 PLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 136 ~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
....+++.+. .+++++++.++..++++|+++....+.... .+++.+...+.++++.++..++.+|+++..
T Consensus 87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1223555555 356788999999999999998754332222 457888999999999999999999998753
Q ss_pred CChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088 215 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294 (431)
Q Consensus 215 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 294 (431)
...++.|.+++.++ ++.+|..|+++|+++....+. .++.|+.++.++++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 24789999999998 999999999999998654343 467888899999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH
Q 014088 295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 374 (431)
Q Consensus 295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 374 (431)
+++.. ...++.|...++.++ ++..+..+|..+-. ...++.|..
T Consensus 217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------------------~~~~~~L~~ 259 (280)
T 1oyz_A 217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------------------KTLLPVLDT 259 (280)
T ss_dssp HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------------------GGGHHHHHH
T ss_pred HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------------------hhhhHHHHH
Confidence 99852 236777888887644 77788888876521 123555666
Q ss_pred hh-cCCCHHHHHHHHHHHH
Q 014088 375 LQ-SHDNTEIYEKAVKILE 392 (431)
Q Consensus 375 l~-~~~~~~v~~~a~~~l~ 392 (431)
++ .++++++...+...+.
T Consensus 260 ~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 260 MLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCCCcHHHHHHHHHhh
Confidence 54 4567777777776654
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.60 E-value=3e-14 Score=147.72 Aligned_cols=321 Identities=13% Similarity=0.220 Sum_probs=217.8
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
++|.++ +.+.+.+. ++++..|..|+++++.++.... +....... .+++.++..+.++++.+|..++|+++.++...
T Consensus 366 ~~~~l~-~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 366 ILEPVL-EFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp GHHHHH-HHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 344333 34445554 5668999999999999997542 32222222 57899999999999999999999999998431
Q ss_pred hHH---HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC----CCChhhHhhhHHHHHHhhcCCC--hHHHH
Q 014088 91 PKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLT 161 (431)
Q Consensus 91 ~~~---~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~lL~~~~--~~v~~ 161 (431)
... ...+ ...++.++..+ .+. +.++..+++++.+++.... .........+++.+...+.+.+ +.++.
T Consensus 443 ~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~ 518 (861)
T 2bpt_A 443 AESIDPQQHL--PGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518 (861)
T ss_dssp GGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHH
T ss_pred hhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHH
Confidence 110 0011 12466777777 443 8899999999999987532 1122344678888889998543 78999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCcccHHHHHHHHhHhhcCChhhhHHHhhc
Q 014088 162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINH 226 (431)
Q Consensus 162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 226 (431)
.++.+++.++...+........ .+++.++..+.. ....++..++.++.+++...+........
T Consensus 519 ~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~- 596 (861)
T 2bpt_A 519 SAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD- 596 (861)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-
T ss_pred HHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-
Confidence 9999999998665443322222 355555555532 13456778899999988655432222222
Q ss_pred CChHHHHHHhcccchh-hHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH
Q 014088 227 QALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 305 (431)
Q Consensus 227 ~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 305 (431)
.+++.+.+.+.+. +. .++..++++++.++............ .+++.+...+..+++.++..++.+++.++.......
T Consensus 597 ~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 597 MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhc
Confidence 4677788888777 56 89999999999998632222223333 278889999987888999999999999886544322
Q ss_pred HHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 014088 306 IKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 306 ~~~l~~~~~l~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~ 345 (431)
..++ ..+++.+.+.++.++ ++++..++.++..++....
T Consensus 675 ~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 675 RRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred cchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 2222 236777777777654 7899999999999988654
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=1.2e-13 Score=136.67 Aligned_cols=297 Identities=17% Similarity=0.143 Sum_probs=207.6
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+.++++..+|..+...+..++..+++.. .-+++.+.+-|+++++.+|..|+.+|+++. .++.... .++
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~ 124 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCE 124 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHH
Confidence 4457778999888888888876444332 135778888899999999999999999986 3333222 356
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.+.+.+ .++++.+|+.|++++.++....+. .....++++.+.++|.++++.++..|+.+|..++...++....-...
T Consensus 125 ~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 125 PLRKCL-KDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HHHHHS-SCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HHHHHc-CCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 788888 688999999999999999986543 22235789999999999999999999999999997754220000011
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CCHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN 261 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~ 261 (431)
+.+..++..+...++-.+...+++++.++..++.... .+++.+...+++. ++.++.+|++++..+.. .+++
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHH
Confidence 3355666666667777788888888888765443322 4567788888888 99999999999999874 2344
Q ss_pred HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC-----------------CHH----HHHHHH---HC----C
Q 014088 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-----------------SNE----QIKFLV---SQ----G 313 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-----------------~~~----~~~~l~---~~----~ 313 (431)
..+.+.. .+.+.|+.++. +++.+|..|+.+|..+.... ... ....+. +. .
T Consensus 276 ~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~ 353 (591)
T 2vgl_B 276 YYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353 (591)
T ss_dssp SHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHH
T ss_pred HHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHH
Confidence 4443332 35666666553 67788888888877775411 000 111111 11 1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 344 (431)
+++.|..+++..+.+++..++++|.++....
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 3556667777788899999999998887644
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.59 E-value=6.6e-14 Score=145.20 Aligned_cols=338 Identities=14% Similarity=0.168 Sum_probs=227.9
Q ss_pred ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-H-HHHHHHHcCChHHHH
Q 014088 30 FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-K-CRDLVLSNGALMPLL 107 (431)
Q Consensus 30 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~-~~~~i~~~~~i~~l~ 107 (431)
+..++..+..+|..++....+ .+. ..+++.+.+.+.+.++.+|+.++++++.++.... . ....+. ..++.++
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~ 417 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSIL 417 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHH
Confidence 357899999999988762221 111 1356677777788899999999999999997642 2 222222 3567777
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCC--CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh----HHHHHH
Q 014088 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAV 181 (431)
Q Consensus 108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~ 181 (431)
..+ .++++.++..++|+++.++...+. ........++|.++..+.++ +.++..+++++.+++.... ......
T Consensus 418 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 418 NLM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HGG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHc-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 777 677899999999999999875321 12234577899999999876 8999999999998875421 111111
Q ss_pred HHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc--------------cchhhHH
Q 014088 182 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------------NYKKSIK 245 (431)
Q Consensus 182 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------------~~~~~v~ 245 (431)
. ..+++.++..+.+.+ +.++..++.+++.++...+......+. .+++.+++.+.. .....++
T Consensus 496 ~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 496 Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 1 256778888887543 688999999999998765544333333 355666666542 1145678
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCH-hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 324 (431)
Q Consensus 246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 324 (431)
..++.++++++............ .+++.++..+...+. .++..++.+++.++.....+...++.. +++.+...++.
T Consensus 574 ~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~ 650 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhcc
Confidence 89999999998743332222222 367788888888776 899999999999986443333344333 78888888887
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC--HHHHHHHHHHHHH
Q 014088 325 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN--TEIYEKAVKILET 393 (431)
Q Consensus 325 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~--~~v~~~a~~~l~~ 393 (431)
+++.++..++.++..+++..+.. +...+. ..++.+...+.+++ ++++..+..++..
T Consensus 651 ~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~ 708 (861)
T 2bpt_A 651 VDSPVSITAVGFIADISNSLEED-----------FRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGG-----------GHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhchh-----------ccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHH
Confidence 88899999999999998765421 222222 22444555544443 6777777655543
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=4.7e-14 Score=135.51 Aligned_cols=352 Identities=11% Similarity=0.111 Sum_probs=238.5
Q ss_pred HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHH-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRV-----V------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~-----~------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
+.+.+.++ .++.+|..|+..|.++.......... . ....+-..++..|.++++.+ ..+..+++.++.
T Consensus 40 L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~ 118 (462)
T 1ibr_B 40 LSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIAC 118 (462)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHH
Confidence 44466554 36799999999999987643211110 0 01123456777888877778 888999999875
Q ss_pred CChHHHHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCC--ChHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDA 163 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a 163 (431)
..... . .-.+.++.++..+ .+. ++.++..++.+|..++... +.........+++.+...+.+. ++.+|..+
T Consensus 119 ~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a 194 (462)
T 1ibr_B 119 AEIPV-N--QWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAA 194 (462)
T ss_dssp HHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred Hhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 32110 0 1134678888888 555 8899999999999999753 2222233467888999999987 79999999
Q ss_pred HHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh
Q 014088 164 CWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 242 (431)
Q Consensus 164 ~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 242 (431)
++++.++......... .....-+++.+...+.++++.++..+++++..++...+......+...+++.++..+.+. ++
T Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 273 (462)
T 1ibr_B 195 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-ID 273 (462)
T ss_dssp HHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ch
Confidence 9999987643322111 011112456666777888899999999999999875543322222225677777888777 89
Q ss_pred hHHHHHHHHHHHhhcCCHH---------------------HHHHHHHhCCHHHHHHHHcc-------CCHhHHHHHHHHH
Q 014088 243 SIKKEACWTISNITAGNVN---------------------QIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAI 294 (431)
Q Consensus 243 ~v~~~a~~~L~nl~~~~~~---------------------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL 294 (431)
.+|..++..+.+++....+ ...... ..++|.+++.+.. .++.+|..|..+|
T Consensus 274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L 352 (462)
T 1ibr_B 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 9999999999988753110 111111 2356777777743 2467899999999
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH
Q 014088 295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 374 (431)
Q Consensus 295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 374 (431)
..++...+..... .+++.+...++++++.++..++.+|..+........ +...+ ...++.+..
T Consensus 353 ~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~ 415 (462)
T 1ibr_B 353 MLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIE 415 (462)
T ss_dssp HHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHH
T ss_pred HHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHH
Confidence 9987654322222 356777888888999999999999999986432110 11112 345778888
Q ss_pred hhcCCCHHHHHHHHHHHHHhcC
Q 014088 375 LQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 375 l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
++.++++.||..|.++|.++..
T Consensus 416 ~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 416 LMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.54 E-value=2.4e-13 Score=141.28 Aligned_cols=368 Identities=14% Similarity=0.152 Sum_probs=222.1
Q ss_pred hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
+++.++. .+.+.+. ++++.+|..|+++++.++.... +...... ..+++.++..++++++.+|..+++++++++...
T Consensus 363 ~~~~~l~-~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 363 IVPHVLP-FIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp GHHHHHH-HHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHH-HHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 3443332 4445554 5678999999999999997554 3222222 358999999999999999999999999998643
Q ss_pred hHH---HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--------------CCChhhHhhhHHHHHHhhc
Q 014088 91 PKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--------------QPLFEQTRPALPALERLIH 153 (431)
Q Consensus 91 ~~~---~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~~i~~L~~lL~ 153 (431)
+.. ...+ ...++.++..+ .+ ++.++..++++|.+++.... .........++|.+...+.
T Consensus 440 ~~~~~~~~~l--~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~ 515 (876)
T 1qgr_A 440 PEAAINDVYL--APLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 515 (876)
T ss_dssp GGGTSSTTTH--HHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTT
T ss_pred chhcccHHHH--HHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHh
Confidence 220 0111 12466777777 34 38899999999999986421 1122234667777777776
Q ss_pred CC---ChHHHHHHHHHHHHhcc--------------------------------------------------------CC
Q 014088 154 SN---DDEVLTDACWALSYLSD--------------------------------------------------------GT 174 (431)
Q Consensus 154 ~~---~~~v~~~a~~~L~~l~~--------------------------------------------------------~~ 174 (431)
.. +..++..++.++..++. ..
T Consensus 516 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~ 595 (876)
T 1qgr_A 516 RPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV 595 (876)
T ss_dssp SCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 23455555555544432 21
Q ss_pred h-HHHHHHHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088 175 N-DKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251 (431)
Q Consensus 175 ~-~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 251 (431)
+ ....... ..+++.++..+.+.. ..++..++.+++.++..........+. .+++.+...+.+..+..+|..++++
T Consensus 596 ~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 596 QHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp CHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred ChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHH
Confidence 1 1111011 134566677776654 468889999999998643322222222 3667788888765368899999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC---
Q 014088 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--- 326 (431)
Q Consensus 252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--- 326 (431)
++.++............ .+++.+++.+.. .+.+++..+++++++++...+++...++ ..+++.+.+.++.+.
T Consensus 674 l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~ 750 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKS 750 (876)
T ss_dssp HHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCC
Confidence 99998632222233332 478888888877 3678999999999999763322222222 124556666665331
Q ss_pred -H-------HHHHHHHHHHHHHHHhhhhhhh--cCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 014088 327 -P-------RIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETY 394 (431)
Q Consensus 327 -~-------~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~ 394 (431)
+ .++..++.++..++........ ..+.....+|...+ ++.+..+..++ +..++..|..+|..+
T Consensus 751 d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 751 DYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 2 6777888888888765432100 00000111122211 23344444555 789999998888765
Q ss_pred cC
Q 014088 395 WV 396 (431)
Q Consensus 395 ~~ 396 (431)
..
T Consensus 826 ~~ 827 (876)
T 1qgr_A 826 CT 827 (876)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.51 E-value=1.2e-12 Score=136.04 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=215.2
Q ss_pred HHHhhhccCC-ChHHHHHHHHHHHHHcCCC-hHhHHHHHh--CCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCChHH
Q 014088 20 FFFHCFFSCC-FGAVQFEAAWALTNIASGT-SENTRVVID--HGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKC 93 (431)
Q Consensus 20 ~lv~~L~~s~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 93 (431)
.+++.+.+.+ ++.++..++.++..++... ++. +.. ..+++.+.+.+.++ +..+|..++.++.+++..-...
T Consensus 132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444665432 7899999999999998632 111 111 24667777888776 6899999999999987532211
Q ss_pred H-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHh-hhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 94 R-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 94 ~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
. ........++.+...+ .+.+.+++..++.+|..++...+..-..... .+++.+...+.+.++.++..++..+..++
T Consensus 209 ~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 0 0011112455566655 6778899999999999999865433333445 78888888888889999999999998887
Q ss_pred cCCh---------------------HHHHHHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHH
Q 014088 172 DGTN---------------------DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCI 223 (431)
Q Consensus 172 ~~~~---------------------~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~ 223 (431)
.... ....... ..+++.++..+.. +++.+|..+..++..++...+.. +
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 5321 0111011 2456667777742 35678999999999987643321 1
Q ss_pred hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
+. .+++.+...+.++ ++.+|..|++++++++.+.. +....... .+++.++..+.++++.+|..|++++++++....
T Consensus 364 ~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 11 4566777788777 89999999999999998543 44444333 479999999999999999999999999986532
Q ss_pred HH--HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 303 NE--QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 303 ~~--~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
+. ....+ ..+++.+...++.+ +.++..++++|.+++....
T Consensus 441 ~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 441 EAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp GGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 11 00111 12567777777764 8899999999999997654
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.51 E-value=1.1e-12 Score=111.88 Aligned_cols=188 Identities=20% Similarity=0.225 Sum_probs=157.9
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 137 (431)
.+.++.|+..|+++++.+|..+++.|+.+.. ...++.|+..+ .++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999999854 13678899999 67899999999999999863
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 217 (431)
...++.+..+++++++.++..++++|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3678999999999999999999999998853 2467889999999999999999999999843
Q ss_pred hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
...++.|.+++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 14678899999888 99999999999999953 2 2567788889999999999999999998
Q ss_pred cCCC
Q 014088 298 TSGG 301 (431)
Q Consensus 298 ~~~~ 301 (431)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.50 E-value=9.8e-13 Score=130.52 Aligned_cols=323 Identities=14% Similarity=0.093 Sum_probs=224.2
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
.+.++|. ++++.+|..|+.++.++...+++... ++++.+..+|.+.++.++..|+++|..++..+++....+.
T Consensus 146 ~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~- 218 (618)
T 1w63_A 146 EVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR- 218 (618)
T ss_dssp HHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH-
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 3444554 56789999999999999876655332 6788888899999999999999999999977654322322
Q ss_pred cCChHHHHHHhcc--------------ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------CCChHH
Q 014088 100 NGALMPLLAQFNE--------------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEV 159 (431)
Q Consensus 100 ~~~i~~l~~~l~~--------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v 159 (431)
..++.+++.|.+ ..++-.+..++.+|..++...+. ......+.|..++. +.+..+
T Consensus 219 -~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 219 -KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp -TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHH
Confidence 467888887743 24677888899999999876421 12334455555543 235688
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239 (431)
Q Consensus 160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 239 (431)
...+++++..+... +. +.. .+++.|..++.++++.++..++.+|..++...+.. +. .....++..+.++
T Consensus 294 ~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~ 362 (618)
T 1w63_A 294 LYETVLTIMDIKSE-SG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS
T ss_pred HHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC
Confidence 99999999987543 21 111 35678888899999999999999999998754322 22 4667889999988
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
+..+|..|+.++..++.... ... +++.+...+...+.++|..++.+|+.++....+.... .++.|+
T Consensus 363 -d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll 428 (618)
T 1w63_A 363 -DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIM 428 (618)
T ss_dssp -CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHH
T ss_pred -ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHH
Confidence 99999999999999987421 222 3567888888889999999999999998754222222 367777
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q 014088 320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~ 396 (431)
++++.....+...+...+..++...... + ...+..|..++. ...+.+...+.|+|..|-+
T Consensus 429 ~lL~~~~~~v~~~~~~~l~~ii~~~p~l------------~-----~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 429 RVLTTAGSYVRDDAVPNLIQLITNSVEM------------H-----AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp HHHHHTGGGSCSSHHHHHHHHHHHSCST------------H-----HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcChhH------------H-----HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 7777655556666666777777654322 1 112333443332 1334455678999998864
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.50 E-value=3.5e-12 Score=107.88 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=157.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
+..+.++++|+++++.+|..++++|+.+.. ...++.|+..+ .++++.++..++++|..+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH------
Confidence 567899999999999999999999998853 13578899999 688999999999999988532
Q ss_pred hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088 139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 218 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 218 (431)
..++.+..++.++++.++..++++|+.+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 578999999999999999999999998753 1467888999999999999999999999853
Q ss_pred hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
...++.|..++.++ ++.+|..|+++|+++.. ++ .++.|..++.++++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 99999999999999942 22 5677888889999999999999999874
No 57
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.49 E-value=1.8e-12 Score=109.64 Aligned_cols=186 Identities=20% Similarity=0.202 Sum_probs=155.8
Q ss_pred hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088 9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88 (431)
Q Consensus 9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 88 (431)
..+..+.++. +..++++.+|..|+++|+.+.. ...++.|+++|+++++.+|..++++|+.+..
T Consensus 12 ~~~~~~~~i~------~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 12 DPEKVEMYIK------NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHH------HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCcchHHHHH------HhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3456666666 4567889999999999998764 2578999999999999999999999999853
Q ss_pred CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014088 89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS 168 (431)
Q Consensus 89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 168 (431)
. ..++.++..+ .++++.++..++++|..+... ..++.+..++.++++.++..++++|+
T Consensus 75 ~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 75 E-----------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp G-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 3578888888 778999999999999998542 57889999999999999999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088 169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 248 (431)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 248 (431)
.+.. ...++.|..++.++++.++..++.+|+.+.. + ..++.|.+++.++ ++.+|..|
T Consensus 133 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A 189 (201)
T 3ltj_A 133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVA 189 (201)
T ss_dssp HHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHH
T ss_pred HhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHH
Confidence 8853 2567889999999999999999999999832 1 3567888889888 89999999
Q ss_pred HHHHHHhh
Q 014088 249 CWTISNIT 256 (431)
Q Consensus 249 ~~~L~nl~ 256 (431)
..+|.++.
T Consensus 190 ~~aL~~l~ 197 (201)
T 3ltj_A 190 VNYLETHK 197 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99999874
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=2.6e-11 Score=120.30 Aligned_cols=291 Identities=13% Similarity=0.088 Sum_probs=218.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
+....++++.+++...++.+...+..++...++.... .++.+.+-| .++++.++..|+++|+++... .
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL-~~~n~~vr~lAL~~L~~i~~~------~ 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDL-NHSTQFVQGLALCTLGCMGSS------E 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHH-SCSSSHHHHHHHHHHHHHCCH------H
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhc-CCCCHhHHHHHHHHHHhcCCH------H
Confidence 5667778888899999999999999999877653222 467788888 788999999999999999732 3
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
....+++.+.+++.+.++.+|+.|+.++.++....++..+ ++++.+..++.+.++.++..|+.++..++..++..
T Consensus 139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 4467889999999999999999999999999877665432 67888888999999999999999999998765432
Q ss_pred hHHHhhcCChHHHHHHhcc--------------cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc----
Q 014088 220 TQCIINHQALPCLLDLLTQ--------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN---- 281 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~--------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~---- 281 (431)
...+ . ..++.++++|.+ ..++..+..++.+++.++..+++... .+++.|.+++..
T Consensus 214 ~~~~-~-~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHF-R-KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETS 286 (618)
T ss_dssp HHHH-H-TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCS
T ss_pred HHHH-H-HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccc
Confidence 2222 2 678888887753 12678888999999999987665332 345555555532
Q ss_pred --CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchH
Q 014088 282 --AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLF 359 (431)
Q Consensus 282 --~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 359 (431)
.+..+..+|++++..+.. .+.... .+++.|..++.++++.++..++.+|..+......
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~--~~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~------------- 346 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKS--ESGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN------------- 346 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCC--CHHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHHHHHHHhcCC--CHHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-------------
Confidence 245788899999988744 222221 2467888888888899999999999998875432
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
.+. .....+..++.+++..++.+|.+++..+.+.+
T Consensus 347 --~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 347 --AVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp --HHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred --HHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 121 23456667778888889988888888887654
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.46 E-value=3.5e-12 Score=108.82 Aligned_cols=186 Identities=20% Similarity=0.194 Sum_probs=153.7
Q ss_pred hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088 11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90 (431)
Q Consensus 11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 90 (431)
..++.++. .| .++++.+|..|++.|+.+.. ...++.|+.+|.++++.++..++++|+.+..
T Consensus 19 ~~~~~L~~-----~L-~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 19 EKVEMYIK-----NL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-- 79 (211)
T ss_dssp GGHHHHHH-----HT-TCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--
T ss_pred hHHHHHHH-----HH-cCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence 45566666 55 47789999999999998864 2579999999999999999999999999863
Q ss_pred hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
.+.++.++..+ .++++.++..++++|..+... ..++.|..+++++++.++..++++|+.+
T Consensus 80 ---------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ---------ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp ---------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 13578888888 788999999999999998542 5789999999999999999999999988
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
.. ...++.|..++.++++.++..++.+|+.+.. + ..++.|.+++.++ ++.+|..|..
T Consensus 140 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVN 196 (211)
T ss_dssp CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHH
Confidence 43 1467888999999999999999999999843 1 3567788899888 8999999999
Q ss_pred HHHHhhcC
Q 014088 251 TISNITAG 258 (431)
Q Consensus 251 ~L~nl~~~ 258 (431)
+|.++...
T Consensus 197 aL~~~~~~ 204 (211)
T 3ltm_A 197 YLETHKSF 204 (211)
T ss_dssp HHHC----
T ss_pred HHHhcCCC
Confidence 99998764
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.46 E-value=1.4e-13 Score=132.17 Aligned_cols=318 Identities=14% Similarity=0.113 Sum_probs=216.0
Q ss_pred hHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCC-hHH
Q 014088 17 VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKC 93 (431)
Q Consensus 17 v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~ 93 (431)
++..+++.|.+ +++.+ ..++.+++.++....... .-.++++.|+..+.++ ++.++..++.+|+.++... +..
T Consensus 91 ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 91 VKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 44456666654 44577 888889998876321110 0147899999999887 8999999999999998532 211
Q ss_pred HHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCC-C-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 94 RDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKP-Q-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 94 ~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
..... ...++.++..+.... ++.++..|++++.++..... . ........+++.+...+.+.+++++..+++++..+
T Consensus 166 ~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 166 LQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp TGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 00111 125667778884432 78999999999999764321 0 01111123577777788888999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---------------------hhHHHhhcCCh
Q 014088 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---------------------QTQCIINHQAL 229 (431)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l 229 (431)
+...+......+...+++.++..+.+.++.++..++..+..++..... ..+..+ ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 866543322122225677777778888889999999999888753200 000011 2356
Q ss_pred HHHHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH
Q 014088 230 PCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 303 (431)
Q Consensus 230 ~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 303 (431)
+.+++.+... .+..+|..|+.+|..++...++ .++ ..+++.+...+.++++.+|..|+.+++.++....+
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 6666666432 1457899999999999873222 122 23677788888888999999999999999986532
Q ss_pred HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 304 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 304 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
+..... -..+++.+...++++++.++..|+++|.++......
T Consensus 400 ~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 400 SQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 211111 145788999999999999999999999999876543
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.45 E-value=8.6e-12 Score=134.11 Aligned_cols=360 Identities=12% Similarity=0.104 Sum_probs=237.1
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-----H
Q 014088 21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----D 95 (431)
Q Consensus 21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~ 95 (431)
+++.|. ++++.+|..|+.+|+.++...++ ..+ ..+++.++..+.++++.+|..++.+|+.++....... .
T Consensus 53 Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 53 ILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 444665 67889999999999999875443 111 1367888888888888999999999999874332210 0
Q ss_pred HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088 96 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 96 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
.-.....++.++..+..++++.++..++.++..++...+.........+++.+...+.++++.+|..++.+++.++...+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 01122367888888843578899999999999999754332223457788899999999999999999999999987654
Q ss_pred HHHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088 176 DKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 254 (431)
Q Consensus 176 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 254 (431)
+. + -..+++.++..+... +..++..++.+++.++...+...... -..+++.+++.+.+. ++.+|..++++++.
T Consensus 208 ~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 208 NI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFES 281 (1230)
T ss_dssp -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHH
T ss_pred HH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 32 2 225677787777543 35788889999999887544322221 236788999999887 89999999999999
Q ss_pred hhcCCHHHHHHHHHhCCHHHHHHHHc-------------------------------------cCCHhHHHHHHHHHHHh
Q 014088 255 ITAGNVNQIQAIIEAGIIGPLVNLLL-------------------------------------NAEFEIKKEAAWAISNA 297 (431)
Q Consensus 255 l~~~~~~~~~~l~~~~~i~~L~~ll~-------------------------------------~~~~~v~~~a~~aL~~l 297 (431)
++...++.....+. .+++.+++.+. +..+++|..|+.++..+
T Consensus 282 l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 282 FVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp HHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred HHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 88743221111111 12333333221 11356799999999999
Q ss_pred cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC-C------CCc-chHHHHHHhhccH
Q 014088 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN-T------GGV-NLFAQAIDDAEGL 369 (431)
Q Consensus 298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~------~~~-~~~~~~l~~~~~~ 369 (431)
+.........+ -..+++.+...+...+..++..++.++..++........... . .+. ..+...+. ..+
T Consensus 361 ~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll 436 (1230)
T 1u6g_C 361 VSTRHEMLPEF--YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP--NIV 436 (1230)
T ss_dssp HTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT--HHH
T ss_pred HHhchhHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh--HHH
Confidence 87543212222 245788888888888899999999999888764321000000 0 000 00111221 134
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 370 EKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 370 ~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
+.+...++++++.++..+..++..+..
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 555666788899999888887776654
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.41 E-value=3.3e-12 Score=137.35 Aligned_cols=352 Identities=13% Similarity=0.120 Sum_probs=232.9
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChH-hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
.+.+.+.+++++.++..|+.++..++..... ....+ ..+++.++..|.++++.+|..++.+++.++...+. .+
T Consensus 137 ~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~- 210 (1230)
T 1u6g_C 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV- 210 (1230)
T ss_dssp HHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-
Confidence 3444665457789999999999998842111 11111 24677888888888999999999999999875543 11
Q ss_pred HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014088 99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178 (431)
Q Consensus 99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 178 (431)
-...++.++..+....+...+..++.++..++...+..-......++|.+...+.+.++++|..++.++..++...+...
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 22357788888855444567788899999988764332223446899999999999999999999999998886543321
Q ss_pred HHHHHhCcHHHHHHhcCC-------------------------------------CCcccHHHHHHHHhHhhcCChhhhH
Q 014088 179 QAVIEAGVCPRLVELLRH-------------------------------------PSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~-------------------------------------~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
.... ..+++.++..+.. ..+.+|..++.++..++...+....
T Consensus 291 ~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 291 YPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp HHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 1111 1344444444421 1234688899999998875443333
Q ss_pred HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC--C-----------------HHHHHHHHHhCCHHHHHHHHccC
Q 014088 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNA 282 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~ 282 (431)
..+ ..+++.+...+.+. +..+|..++.++..+... . .......+ ..+++.+.+.+.++
T Consensus 370 ~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~ 446 (1230)
T 1u6g_C 370 EFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK 446 (1230)
T ss_dssp HHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC
Confidence 344 36788888888777 899999999988877641 0 11112222 23566677778888
Q ss_pred CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHH
Q 014088 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA 360 (431)
Q Consensus 283 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 360 (431)
++.+|..++.+++.++.........++ ..+++.+...++.++ ..++..++..+..++....... +.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~ 514 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FH 514 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GH
T ss_pred CHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HH
Confidence 999999999999988764321111111 235777888887665 4888888988888876432211 23
Q ss_pred HHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 361 QAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 361 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
..+. ..++.+.....+++..++..|..++..+.
T Consensus 515 ~~l~--~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 515 PHVQ--ALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp HHHT--TTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHH--HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 3332 34666777777888888777766666544
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.27 E-value=8.4e-10 Score=86.81 Aligned_cols=217 Identities=14% Similarity=0.193 Sum_probs=177.4
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 014088 57 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 136 (431)
Q Consensus 57 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 136 (431)
+..++..++.+|.+.-+.++..|+..+.+++...++..... +..|+.++..+...+.......+++.++.-.|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 44678899999999999999999999999998888754443 45677777778888888888899999987542
Q ss_pred ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088 137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 216 (431)
....+.+|.+..-.+-++++++.+..++|..+...+|.... +++..+..++.+++..-+..++..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45578899999888889999999999999999988876544 56678889999888778888999988887655
Q ss_pred hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088 217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 296 (431)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 296 (431)
..+.. ..+|.|..+|.+. +.-+|..|..+|.+++..++..+..+. .-++-+.+.+..++..+..+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 44432 7899999999999 999999999999999998888554332 34556677888899888888888
Q ss_pred hcC
Q 014088 297 ATS 299 (431)
Q Consensus 297 l~~ 299 (431)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.25 E-value=4.1e-09 Score=104.26 Aligned_cols=292 Identities=14% Similarity=0.107 Sum_probs=201.3
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+..+++...+..+...+..++..+++.... ++..+.+=|+++++.++..|+++|+++.. ++... ..++
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~ 149 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAG 149 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHH
Confidence 345677899999999999998866654322 35677778889999999999999999964 33222 2456
Q ss_pred HHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088 105 PLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 105 ~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 183 (431)
.+.+.+. .+.++.+|+.|+.++.++.+..|... ...++++.+.++|.+.++.++..|+.++..++...+.....+..
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~ 227 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS 227 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 6777763 46789999999999999998643221 11478999999999999999999999999998766543221111
Q ss_pred hCcHHHHHHhcCCC-------------CcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHh---------ccc-
Q 014088 184 AGVCPRLVELLRHP-------------SPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLL---------TQN- 239 (431)
Q Consensus 184 ~~~i~~L~~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL---------~~~- 239 (431)
.++..|.+++..+ ++-.+...++.++.++... +.....+.+ .+..+++.+ ++.
T Consensus 228 -~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n 304 (621)
T 2vgl_A 228 -LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSN 304 (621)
T ss_dssp -HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHH
T ss_pred -HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccc
Confidence 2233333443221 3446777888888887643 333332222 333344332 222
Q ss_pred chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
....+..+++.++..+.. +++.... ++..|..++.++++.+|..|+.+|..++..... ... + ......++
T Consensus 305 ~~~aVl~ea~~~i~~l~~-~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~-~-~~~~~~i~ 374 (621)
T 2vgl_A 305 AKNAVLFEAISLIIHHDS-EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEA-V-KTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHHCC-CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHH-H-HTTHHHHH
T ss_pred hHHHHHHHHHHHHHhcCC-cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHH-H-HHHHHHHH
Confidence 023888899999988863 3443332 456788888888999999999999999876531 112 2 23577788
Q ss_pred hhcC-CCCHHHHHHHHHHHHHHHHh
Q 014088 320 DLLN-CPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 320 ~ll~-~~~~~v~~~al~~L~~l~~~ 343 (431)
.+++ ++|..++..++.+|..++..
T Consensus 375 ~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 375 NALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCCHhHHHHHHHHHHHHcCh
Confidence 8888 88999999999999988744
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.18 E-value=5.1e-09 Score=103.56 Aligned_cols=299 Identities=13% Similarity=0.111 Sum_probs=211.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 138 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 138 (431)
.+....++++.+++...++.+...+..++...++.. +. .++.+.+-+ .++++.++..|+.+++++.. .
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~--~L---~iN~l~kDl-~~~n~~ir~lALr~L~~i~~------~ 141 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI--RL---INNAIKNDL-ASRNPTFMGLALHCIANVGS------R 141 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH--HH---HHHHHHHHH-HSCCHHHHHHHHHHHHHHCC------H
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH--HH---HHHHHHHhc-CCCCHHHHHHHHHHhhccCC------H
Confidence 467888889999999999999999999998877532 22 356777777 68899999999999999954 2
Q ss_pred hhHhhhHHHHHHhh--cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088 139 EQTRPALPALERLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 216 (431)
Q Consensus 139 ~~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 216 (431)
.....++|.+.+++ .+.++.||+.|+.++..+....++... ..++++.+..+|.+.++.++..|+.++..++..+
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 35567889999999 889999999999999999876654322 2478999999999999999999999999998765
Q ss_pred hhhhHHHhhcCChHHHHHHhccc-c-----------hhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHc---
Q 014088 217 DMQTQCIINHQALPCLLDLLTQN-Y-----------KKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLL--- 280 (431)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~lL~~~-~-----------~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~--- 280 (431)
+......+. ..+..|.+++... . ++-.+...+..++.++.. +++....+.+ +++.++..+.
T Consensus 219 ~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 219 PEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp HHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred hHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 532211111 1233333443221 1 467888888888888863 4555554444 3444444331
Q ss_pred ------cC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088 281 ------NA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 352 (431)
Q Consensus 281 ------~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 352 (431)
+. ...|..+|+.++..+.. .++.... ++..|..++.+.++.++..++..|..++.....
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~------ 362 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS------ 362 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT------
T ss_pred ccccccccchHHHHHHHHHHHHHhcCC--cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc------
Confidence 11 23788889999998853 3343332 577888899889999999999999999765321
Q ss_pred CCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 014088 353 TGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~ 397 (431)
...+.. ....+...+. +++..++.+|.+++..+.++
T Consensus 363 -------~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 363 -------HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp -------HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred -------HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 111221 2344555455 78888888888888776643
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.09 E-value=8.1e-09 Score=84.95 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=171.5
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
...+..+.+++.+.|+.++.+++.+|..+....+.......-..+++.++.++.+.+..+...|++++..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999877555444444447899999999999999999999999999987653333
Q ss_pred HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
.+. .+...+..++.++ ++-++.+|+..++-+-..++. .+++..+.+++.+.+.+++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 232 3567889999977 999999999999998443221 125667888888889999999999999998754
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCC
Q 014088 302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDN 380 (431)
Q Consensus 302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~ 380 (431)
.... .-.+++.-+-++++++|+.+++.|+.++..++...-..+ ..-... +.......+. ....
T Consensus 182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~---------~~~~~~---~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN---------VKIELL---KISRIVDGLVYREGA 245 (265)
T ss_dssp SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC---------CHHHHH---HHHHHHHHGGGCSSC
T ss_pred CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh---------HHHHHH---HHHHHHHHHHHhcCC
Confidence 2100 123467778889999999999999999999987743321 112221 2344456666 6788
Q ss_pred HHHHHHHHHHHHH
Q 014088 381 TEIYEKAVKILET 393 (431)
Q Consensus 381 ~~v~~~a~~~l~~ 393 (431)
|.++.+|..+-+.
T Consensus 246 ~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 246 PIIRLKAKKVSDL 258 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 9999999776554
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.06 E-value=5.5e-08 Score=76.64 Aligned_cols=220 Identities=13% Similarity=0.196 Sum_probs=171.1
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhh
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT 220 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~ 220 (431)
..++..++.+|.+.-..++++|+..+..++...++....+ +..|+-+++ +..-.......++++.++...+...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 5788899999999889999999999999999888766633 355556654 3445566788999999998777655
Q ss_pred HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088 221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300 (431)
Q Consensus 221 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 300 (431)
. +.+|.+..-..-. ++++|....++|..++..+|....- ++..+..++.+++..=|..|+.+++.+..+
T Consensus 106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 5 5678888888888 9999999999999999988886654 455789999999988888899999888776
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380 (431)
Q Consensus 301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 380 (431)
+ .+++ .-.++.|..++..++.-++..+.++|.++.....+. +..+. +++.+ +++.+
T Consensus 175 ~----~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii~-----~kl~e-~~D~S 230 (253)
T 2db0_A 175 S----FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVVI-----KRLEE-LNDTS 230 (253)
T ss_dssp T----HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHHH-----HHHHH-CCCSC
T ss_pred C----cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHHH-----HHHHH-hcCcH
Confidence 5 2322 336999999999999999999999999999877653 33332 33444 57788
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 014088 381 TEIYEKAVKILETYWVEEDED 401 (431)
Q Consensus 381 ~~v~~~a~~~l~~~~~~e~~~ 401 (431)
..+.......|.++.--|.++
T Consensus 231 ~lv~~~V~egL~rl~l~e~~~ 251 (253)
T 2db0_A 231 SLVNKTVKEGISRLLLLEGHS 251 (253)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 899988888888776555443
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.03 E-value=8.7e-09 Score=103.26 Aligned_cols=208 Identities=15% Similarity=0.094 Sum_probs=148.3
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNG 101 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~ 101 (431)
.|. |+++..|..|+++|.+++. +++.+..+...|+|..++ .+|.+++.++|..|+++|.||+.+ .++....+...|
T Consensus 42 ~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 42 DLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp HHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence 354 6778999999999999997 788888999999888765 578889999999999999999954 467788899999
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 181 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 181 (431)
++++|..++.+. ...+....... ..........+ .++...++.+|.+++.........+
T Consensus 120 il~~L~~~l~~~---------~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~L~e~s~~~~~~v 178 (684)
T 4gmo_A 120 VLTAIEHAAKAV---------LETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGLLALARDEIHEAV 178 (684)
T ss_dssp HHHHHHHHHHHH---------HHHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHhh---------HHHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999998321 11111111110 00000001111 1244566777888887777766777
Q ss_pred HHhCcHHHHHHhcCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHH---HHHHhcccchhhHHHHHHHHHHHh
Q 014088 182 IEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC---LLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 182 ~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
...+.++.++..|.+ ...+++..++.+|..++..++...+.+.+.+.... +..+. .. ....+..+++++.|+
T Consensus 179 ~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~-~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 179 ATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TG-TDPRAVMACGVLHNV 256 (684)
T ss_dssp HTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HS-SCTTHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cC-CcHHHHHHHHHHHhH
Confidence 788889999888743 23578999999999999999888887777654333 33332 33 345678888999987
Q ss_pred h
Q 014088 256 T 256 (431)
Q Consensus 256 ~ 256 (431)
.
T Consensus 257 ~ 257 (684)
T 4gmo_A 257 F 257 (684)
T ss_dssp H
T ss_pred h
Confidence 4
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=2.9e-09 Score=106.76 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=149.3
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHH-HHHhhcCCChHHHHHHHHHHHHhccC-ChHHHH
Q 014088 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 179 (431)
Q Consensus 102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 179 (431)
.+.++++.| ++++++.|..|+++|++++.+..........++++. +..+|.+++.+++..|+++|.||+.. ..+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 466788888 788999999999999999976444444455666655 56678999999999999999999865 455667
Q ss_pred HHHHhCcHHHHHHhcCCC-------C--------------cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088 180 AVIEAGVCPRLVELLRHP-------S--------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~-------~--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 238 (431)
.+...|+++.|..++... . ..+...++.+|++++..++.....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 788889999998887421 0 1244567889999998888777778888999999999854
Q ss_pred c--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHH--HHHHHccCCHhHHHHHHHHHHHhc
Q 014088 239 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP--LVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 239 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~--L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
. ...+++..|+.+|.+++..+++..+.+.+.+.... ++..+...+...+..+++.|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3 13679999999999999999999988888665322 222223344456778888888874
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.97 E-value=5.5e-09 Score=94.48 Aligned_cols=277 Identities=14% Similarity=0.089 Sum_probs=166.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 139 (431)
+...+++++++++..+++-+...+.+++...++ .++ ++..+.+-+ +++++-++..|+++|+++... .
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~------~ 135 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDS------T 135 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT------T
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH------H
Confidence 456778899999999999999999888876433 222 467777778 778999999999999999765 2
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
....+.+.+.+.+.+.++-|++.|+.+...+....++..+ ++++.+.+++.+.++.+...|+.++..+...+...
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a 210 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA 210 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH
Confidence 4567888899999999999999999999999988876543 78999999999999999999999999987654321
Q ss_pred hHHHhhcCChHHHHHHhccc--chhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088 220 TQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 296 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 296 (431)
+..++..+... .++-.+...+..++.++..+ ++. ...+++.+..++++.++.|..+|+.++..
T Consensus 211 ---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 211 ---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp ---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 23334433332 02333444444444444433 221 23456677777888899999999999999
Q ss_pred hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh
Q 014088 297 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ 376 (431)
Q Consensus 297 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~ 376 (431)
+..... .. -..++..|..+++++++.++-.|+..|..+...... .+.+ .-..|+.+.
T Consensus 277 l~~~~~-~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---------------~v~~--~n~~ie~li 333 (355)
T 3tjz_B 277 LPGCSA-KE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---------------AVTA--CNLDLENLV 333 (355)
T ss_dssp -----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred ccCCCH-HH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---------------HHHH--HHHHHHHHc
Confidence 855221 11 123577788888889999999999999988875432 2222 234478888
Q ss_pred cCCCHHHHHHHHHHH
Q 014088 377 SHDNTEIYEKAVKIL 391 (431)
Q Consensus 377 ~~~~~~v~~~a~~~l 391 (431)
+++|..+...|...|
T Consensus 334 ~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 334 TDANRSIATLAITTL 348 (355)
T ss_dssp ---------------
T ss_pred cCCcHhHHHHHHHHh
Confidence 999998888876544
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=5.5e-09 Score=90.86 Aligned_cols=187 Identities=14% Similarity=0.219 Sum_probs=144.1
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
+.+.+.+ ++.++..|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 788999999999999999886322211223578889999995 89999999999999999865333323222
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVN 261 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~ 261 (431)
..+++.++..+.+.+..++..+..++..++.... .. .+++.+...+++. ++.+|..++..|+.+.. ..++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2578999999999999999999999999987543 11 3578889999988 89999999999999654 3333
Q ss_pred H-HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 262 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 262 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
. ....+. .++|.+..++.+.++++|..|..+++.++..-
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1 122223 47899999999999999999999999997543
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.94 E-value=2.4e-07 Score=85.60 Aligned_cols=323 Identities=13% Similarity=0.125 Sum_probs=197.0
Q ss_pred hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCCh-HHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 57 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 57 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
+..++..++.+|+. ...++.+..+..+.-+...++ .....+.+.... ..+........++-....++.++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34677889998876 778999999999998887665 332333332222 2233333233344445566666666664
Q ss_pred CCCCCChhhHhhhHH--HHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcC----CC-----
Q 014088 132 GKPQPLFEQTRPALP--ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP----- 197 (431)
Q Consensus 132 ~~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~----- 197 (431)
..+. .......++. .++..|.. ++...+.-++.++..+...+.- ...+.+. ..++.++.+++ +.
T Consensus 155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 4322 2333344444 45555654 2445566788888887776543 3334432 23555544322 11
Q ss_pred --------CcccHHHHHHHHhHhhcCChhhhHHHhhcCCh--HHHHHHhcccchhhHHHHHHHHHHHhhcCCH----HHH
Q 014088 198 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI 263 (431)
Q Consensus 198 --------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~ 263 (431)
...+...++.+++-++...+ ....+...++. +.|+.+++....+++.+-++.++.|+....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 23457889999999988654 44445444433 5677778776678999999999999998542 223
Q ss_pred H-HHHHhCCHHHHHHHHccC---CHhHHHHHHHHHHHh---------------------cCCC----CH----HHHHHHH
Q 014088 264 Q-AIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNA---------------------TSGG----SN----EQIKFLV 310 (431)
Q Consensus 264 ~-~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l---------------------~~~~----~~----~~~~~l~ 310 (431)
. .++..++ +.+++.|... |+++....-.....+ ...+ ++ ++...|.
T Consensus 312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 3 2333444 4566666543 555543222211111 1111 11 1122222
Q ss_pred HC--CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC
Q 014088 311 SQ--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 378 (431)
Q Consensus 311 ~~--~~l~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 378 (431)
+. .++..|.+++++ .|+.+...|+.=|+.+++..+. .+..+.+.|+.+++.+|++|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSC
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcC
Confidence 22 237788888863 3677888888899999987654 37788899999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 014088 379 DNTEIYEKAVKILETYW 395 (431)
Q Consensus 379 ~~~~v~~~a~~~l~~~~ 395 (431)
+|++|+..|..+++.+.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888764
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.92 E-value=1.5e-07 Score=94.55 Aligned_cols=225 Identities=16% Similarity=0.175 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 110 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l 110 (431)
+.++..|+..|+.+..++... .+++.|.+.+.+.+..++..++.+|+.+-...... + ++..++..+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~ 516 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYS 516 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHH
Confidence 678999999999876543211 25677888888777777888889999874332211 1 355666666
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHh--ccCChHHHHHHHHhCcH
Q 014088 111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYL--SDGTNDKIQAVIEAGVC 187 (431)
Q Consensus 111 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l--~~~~~~~~~~~~~~~~i 187 (431)
..+.+..+++.++..|+.+..+. ...++.+++.|. +.++-+|..++.+++-- ..++... +
T Consensus 517 ~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------I 579 (963)
T 4ady_A 517 QETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------V 579 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------H
T ss_pred hccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------H
Confidence 56678899999999999886653 245666766665 56888888888877643 3333322 3
Q ss_pred HHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH
Q 014088 188 PRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 266 (431)
Q Consensus 188 ~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 266 (431)
+.|+..+ .+.+..+|+.|+..|+.+..+++ ..++.++.+|.+..++.+|..|+++++.++.+++..
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---- 646 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---- 646 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence 4344433 45667899999999999877654 345667776655559999999999999999865431
Q ss_pred HHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 267 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 267 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
.++..|..+.++.+..|+..|+.+|+.+....+
T Consensus 647 ---~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 647 ---SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred ---HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 145678888889999999999999999987543
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=2.3e-08 Score=90.46 Aligned_cols=270 Identities=11% Similarity=0.092 Sum_probs=154.4
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+..+++..++.-....+.+++...++. + =++..+.+=++++++-+|-.|+++|+++.... ..+. ..+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~ 142 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IER 142 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHH
Confidence 445778899999888888888753332 2 25788888889999999999999999997543 1122 244
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 184 (431)
.+-+.+ .+.++-+++.|+.+..++....|. ...++++.+.+++.+.++-++.+|+.++..+..++...
T Consensus 143 ~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a------- 210 (355)
T 3tjz_B 143 YMKQAI-VDKVPSVSSSALVSSLHLLKCSFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA------- 210 (355)
T ss_dssp HHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH-------
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH-------
Confidence 566666 788999999999999999876432 34578999999999999999999999999998765422
Q ss_pred CcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088 185 GVCPRLVELLRHP---SPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260 (431)
Q Consensus 185 ~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 260 (431)
+..++..+... ++-.....++.+..++..+ +. .....++.+..+|++. ++.|..+|++++..+...+.
T Consensus 211 --~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 211 --VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSA 282 (355)
T ss_dssp --HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHHTC------
T ss_pred --HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCH
Confidence 22333333322 2333344455555555443 22 2236778888889988 99999999999998855222
Q ss_pred HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
. .. ..++..+..++.++++.+|..|++.|..+..... .... ..-..+.++++++|..+...|+..|.
T Consensus 283 ~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~-----~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 283 K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVT-----ACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2 11 2345667778888999999999999999987542 2221 14556677888888888877666554
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.87 E-value=3.4e-09 Score=92.22 Aligned_cols=185 Identities=14% Similarity=0.186 Sum_probs=140.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088 62 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140 (431)
Q Consensus 62 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 140 (431)
+.+.+.+++.++..|..++..|..+....+... ... ...++.+...+..+.+..++..|+.++..++..-...-...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 457778889999999999999999875421110 000 11355666667337889999999999999997542222334
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC-hh-
Q 014088 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM- 218 (431)
Q Consensus 141 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~- 218 (431)
...++|.++..+.++++.+|..+..++..+....+ .. .+++.+...+.+.++.++..++..++.+.... +.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 57799999999999999999999999999987653 12 36788889999999999999999999975543 22
Q ss_pred hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.....+. .+++.+.+.+.++ +.++|..|..+++.++.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 1222333 6789999999988 99999999999999886
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.84 E-value=1e-06 Score=88.69 Aligned_cols=261 Identities=14% Similarity=0.133 Sum_probs=181.7
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
++++.++..|+.+|+.+..+... .++..|...|.+.+ +.++..|+..|+.+...+.. ..
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--ee--- 472 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--IE--- 472 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--HH---
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--HH---
Confidence 56689999999999999875432 14677777776544 77898999999998644321 11
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKI 178 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 178 (431)
+++.|...+ .+.+..++..|+.+|+.+-.+... ...+..|+..+ .+.+..+++.++.+|+.+....+..
T Consensus 473 --v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~- 542 (963)
T 4ady_A 473 --VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL- 542 (963)
T ss_dssp --HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG-
T ss_pred --HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH-
Confidence 356677777 444556677888888877554321 12344444443 3557889999999999887776543
Q ss_pred HHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 179 QAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
++.+++.|. ..++.+|..++.+++.-..+.... ..++.|+..+.+..++.+|..|+.+|+.+..
T Consensus 543 --------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 543 --------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp --------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 345555554 467778888888777555444322 2355566665544478999999999999887
Q ss_pred CCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 014088 258 GNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 336 (431)
Q Consensus 258 ~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~ 336 (431)
++++ .++.+++.+ ++.++.+|..|..+|+.+...... ..+++.|..+.+..+..++..|+.+
T Consensus 608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHH
Confidence 6542 466677655 456999999999999999765431 1146677788889999999999999
Q ss_pred HHHHHHh
Q 014088 337 LENILKA 343 (431)
Q Consensus 337 L~~l~~~ 343 (431)
|..+...
T Consensus 671 LG~Ig~g 677 (963)
T 4ady_A 671 LSMILIQ 677 (963)
T ss_dssp HHHHSTT
T ss_pred HHHHhcC
Confidence 9988654
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.84 E-value=4.9e-08 Score=80.40 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=147.3
Q ss_pred CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC---CHH
Q 014088 185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVN 261 (431)
Q Consensus 185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~ 261 (431)
+.+..+..++...++.++.+++.++..+....+.......-..+++.+++++.+. ++.+...|+.++..+..+ +++
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 4678889999999999999999999999876544444444447899999999999 999999999999999985 334
Q ss_pred HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
.... +...+.+++.+++.-++.+|+..++.+--... ..+++..+.+++++++++++..++.++.++.
T Consensus 112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--------SKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3333 35578888999999999999999999932221 1125778888999999999999999999998
Q ss_pred HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
...+..+. + .+.++-+..+++++++.++++|..+++..++.--.
T Consensus 179 ~~S~D~~i---------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 179 NSSADSGH---------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp GGCSSCCC---------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred cccCCHHH---------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 76543221 1 23345578889999999999999999999886444
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.3e-08 Score=85.88 Aligned_cols=191 Identities=10% Similarity=0.085 Sum_probs=141.2
Q ss_pred HHHHhccccchhHHHHHHHHHHH-hhcCCCCCC--hhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-HHHH-
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 179 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~-~~~~- 179 (431)
+...+ .+.++.-|..++..|.. ++.+.+... ......++..+.+.+ ++.+..++..++.+++.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 67899999999999999 886543322 222356788899999 78899999999999999985432 1222
Q ss_pred HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 259 (431)
Q Consensus 180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 259 (431)
.... .+++.++..+.+....|+..+..++..++...+.......-..+++.|...|++. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 1222 4788999999998899999999999888864321100000013577888999998 8999999999999998633
Q ss_pred H---HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088 260 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299 (431)
Q Consensus 260 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 299 (431)
. ......+...++|.+.+++.+.+.+||..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 444444424689999999999999999999999998864
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.9e-08 Score=85.43 Aligned_cols=193 Identities=10% Similarity=0.123 Sum_probs=140.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH-hcCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh-h
Q 014088 64 FVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF-E 139 (431)
Q Consensus 64 L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-~ 139 (431)
+.+.+++.++.-|..++..|.. ++...+........ ...+..+.+.+..+.+..++..|+.++..++.+-. ..-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788999999999999999 87432221100000 12355666777567789999999999999997543 2333 4
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh-
Q 014088 140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM- 218 (431)
Q Consensus 140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~- 218 (431)
....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+.+.++.++..++.+|..++.....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 5577999999999999999999999998888764321100000013677888999999999999999999999875542
Q ss_pred --hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 219 --QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 219 --~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
.....+...+++.+.+.+.++ +..+|..|..+++.++.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222334247899999999998 99999999999999875
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.67 E-value=1e-06 Score=89.65 Aligned_cols=301 Identities=16% Similarity=0.144 Sum_probs=204.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhH
Q 014088 64 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT 141 (431)
Q Consensus 64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~ 141 (431)
+++.+...+..-+..+...+.++.......+ ....+.+..+.+.+....+. +.|+.++..++...+. ......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444444333334455566666543221100 00113566677777433333 8999999999976622 233344
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCChhh
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQ 219 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~ 219 (431)
-+++|.++..+.+....|+..|-.++..+...-+. ... .+++.|+..+.+. .+..+..|+.++..++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 57889999999999999999988888877754333 222 5678888888654 6899999999999999765544
Q ss_pred hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
....+. .++|.+.+.+.+. .++++..|..++..+|. .|.+. ..++|.|++.+.+++. ..+++..|+.-
T Consensus 169 ~~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HHHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 443333 6889999999888 89999999999999987 44542 2479999999998843 44556666555
Q ss_pred cCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088 298 TSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 375 (431)
Q Consensus 298 ~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 375 (431)
.... +...... .++.|.+-|......+.+.+.-++.||++.-+.... ...++... ++.++..
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~~~l--~p~~~~~ 302 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFLGKL--LPGLKSN 302 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHTTT--HHHHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhhhhh--hhHHHHH
Confidence 4433 2222222 367777788888889999999999999986655432 34444332 5666665
Q ss_pred -hcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088 376 -QSHDNTEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 376 -~~~~~~~v~~~a~~~l~~~~~~e~~ 400 (431)
....+||+|+.|.+++..+..-...
T Consensus 303 ~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 303 FATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 5678999999999999988765443
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=1.7e-08 Score=78.61 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=92.9
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 104 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 104 (431)
+.+++++.+|..|+++|+.+.. ..++.|+.+|+++++.+|..++++|+++.. +. .++
T Consensus 20 ~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~---------a~~ 76 (131)
T 1te4_A 20 HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER---------AVE 76 (131)
T ss_dssp -CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH---------HHH
Confidence 3456778999999999887643 136999999999999999999999999863 11 477
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
.|+..+ .++++.++..++++|..+.. ...++.|..+++++++.++..++++|..+
T Consensus 77 ~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 888888 78899999999999999863 35789999999999999999999988653
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=1.4e-05 Score=81.41 Aligned_cols=247 Identities=14% Similarity=0.185 Sum_probs=177.1
Q ss_pred HHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc
Q 014088 35 FEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 111 (431)
Q Consensus 35 ~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~ 111 (431)
+.|+.++..++... +..--+++ +.+|.++..+.+....++..|-.++..+...-+... + ...++.|+..+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~ 143 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIV 143 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhc
Confidence 89999999998533 12223333 688999999988889999988888877764322211 1 225788999996
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRL 190 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L 190 (431)
....+..+..|+.++..|+...+.........++|.+...+.+..+++...+..++..++.--. ..++ .++|.|
T Consensus 144 ~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~ 218 (986)
T 2iw3_A 144 ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSL 218 (986)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHH
Confidence 6668999999999999999875433334457899999999999999999999999988875321 1122 678999
Q ss_pred HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHHHHHH
Q 014088 191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIE 268 (431)
Q Consensus 191 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~ 268 (431)
+..+.+++. ...++..|+.-..-.......+ +=.+|.|..-|... ...+++.++-++.|+|. .+|.....++.
T Consensus 219 ~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~ 293 (986)
T 2iw3_A 219 IQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG 293 (986)
T ss_dssp HHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred HHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh
Confidence 999988743 5556666665544332111111 12357777778777 78889999999999998 67776666654
Q ss_pred hCCHHHHHHHHccC-CHhHHHHHHHHHHHhc
Q 014088 269 AGIIGPLVNLLLNA-EFEIKKEAAWAISNAT 298 (431)
Q Consensus 269 ~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 298 (431)
.++|.+-+....- ++++|+.|..++..+.
T Consensus 294 -~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 294 -KLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp -TTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 4777777766654 8999988888887773
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=2.4e-08 Score=77.65 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088 58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137 (431)
Q Consensus 58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 137 (431)
...++.+..+|+++++.+|..++++|+.+... .++.|+..| .++++.++..++++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence 35688899999999999999999999877421 257888888 67899999999999998863
Q ss_pred hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
...++.|..+++++++.++..++++|+++.. ...++.|..++.++++.++..++.+|+.+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3578999999999999999999999998862 13467888999989999999999988754
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.49 E-value=4.3e-05 Score=70.79 Aligned_cols=320 Identities=13% Similarity=0.093 Sum_probs=190.5
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCCh---HhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTS---ENTRVVIDHGAV-PIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCR 94 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 94 (431)
.++.+|.....+++....+..+..+...++ .....+.+..-. ..+.. ++..+++-....+..++..++...+...
T Consensus 81 ~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~~~ 160 (480)
T 1ho8_A 81 PLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNV 160 (480)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCH
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCccH
Confidence 355588878888999999999999887665 333444443322 22333 3443445555666666566653322211
Q ss_pred HHHHHcCChH--HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH--hhhHHHHHHhhcC---------------C
Q 014088 95 DLVLSNGALM--PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIHS---------------N 155 (431)
Q Consensus 95 ~~i~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~lL~~---------------~ 155 (431)
+.+.. .+. -++..|...++.+.+..++.+|..|.+....+..... ...+|.++.+++. +
T Consensus 161 ~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~ 238 (480)
T 1ho8_A 161 KLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSN 238 (480)
T ss_dssp HHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------
T ss_pred hHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCC
Confidence 11100 112 3445553322344566788889888887544433322 3356666554431 1
Q ss_pred --ChHHHHHHHHHHHHhccCChHHHHHHHHhCcH--HHHHHhcCC-CCcccHHHHHHHHhHhhcCCh----hhhH-HHhh
Q 014088 156 --DDEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLRH-PSPSVLIPALRTVGNIVTGDD----MQTQ-CIIN 225 (431)
Q Consensus 156 --~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~-~~~~ 225 (431)
...++.+++.++.-++-.++ ..+.+...++. ..|+.+++. ...++.+-++.++.|+..... .... .++.
T Consensus 239 ~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~ 317 (480)
T 1ho8_A 239 HLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL 317 (480)
T ss_dssp CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence 24668889999888887754 44545554533 456666654 678899999999999988652 1112 2333
Q ss_pred cCChHHHHHHhccc-c-hhhHHHHHHHHHHHhhc-----C-CHHHHHHHH----------------H----------hCC
Q 014088 226 HQALPCLLDLLTQN-Y-KKSIKKEACWTISNITA-----G-NVNQIQAII----------------E----------AGI 271 (431)
Q Consensus 226 ~~~l~~L~~lL~~~-~-~~~v~~~a~~~L~nl~~-----~-~~~~~~~l~----------------~----------~~~ 271 (431)
.++++ +++.|... . ++++....-+..-.|.. . -+++..++. . -.+
T Consensus 318 ~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~l 396 (480)
T 1ho8_A 318 GNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI 396 (480)
T ss_dssp HCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHH
T ss_pred ccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHH
Confidence 34444 44444322 1 34443332222111111 0 122222221 1 124
Q ss_pred HHHHHHHHcc----------CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088 272 IGPLVNLLLN----------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341 (431)
Q Consensus 272 i~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~ 341 (431)
+..|+++|.. .++.+..-|+.=|+.++.+.+ ..+..+-+.|+=..+++++.++|++++..|+.++..++
T Consensus 397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P-~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCc-chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7889999973 367788889999999998753 66666667888899999999999999999999999988
Q ss_pred Hhh
Q 014088 342 KAG 344 (431)
Q Consensus 342 ~~~ 344 (431)
...
T Consensus 476 ~~~ 478 (480)
T 1ho8_A 476 GYT 478 (480)
T ss_dssp HHS
T ss_pred Hhc
Confidence 653
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.36 E-value=4.8e-05 Score=79.57 Aligned_cols=350 Identities=9% Similarity=0.056 Sum_probs=196.1
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-----
Q 014088 16 FVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS----- 90 (431)
Q Consensus 16 ~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----- 90 (431)
.++..+++.+.+.+ +.+|.+.+.++..++...-.. ++ .++++.|++.+++++...+..++.++..++...
T Consensus 85 ~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~-~W---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 85 LIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPD-RW---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTT-TC---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCcc-ch---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555666776554 789999999999887621110 00 368899999998888888999999999998632
Q ss_pred -hHHHHHHH--HcCChHHHHHH-------hcccc-c-------hhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHh
Q 014088 91 -PKCRDLVL--SNGALMPLLAQ-------FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151 (431)
Q Consensus 91 -~~~~~~i~--~~~~i~~l~~~-------l~~~~-~-------~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~l 151 (431)
++.+..+. -....+.++.+ +.... + .++...++.+++.+.... +..........++.+..+
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 22222111 01123333333 32211 1 133344666777765433 221112234455666666
Q ss_pred hcCC------C---------hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-----CCCcccHHHHHHHHhH
Q 014088 152 IHSN------D---------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGN 211 (431)
Q Consensus 152 L~~~------~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~l~~ 211 (431)
+... + ..+++.++.++..+....+........ .+++.....+. ..+..++..++..+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 6421 1 246788899998887655443332222 45555555553 2345678888888888
Q ss_pred hhcCChhhhHHHhh-cCChHHHH-----HHhcc----------------------cchhhHHHHHHHHHHHhhcCCHHHH
Q 014088 212 IVTGDDMQTQCIIN-HQALPCLL-----DLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQI 263 (431)
Q Consensus 212 l~~~~~~~~~~~~~-~~~l~~L~-----~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~ 263 (431)
++.... .. .++. .+.++.++ ..+.- ......|..|..+|..++...++..
T Consensus 319 ~~~~~~-~~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v 396 (960)
T 1wa5_C 319 VTRIPK-YF-EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV 396 (960)
T ss_dssp HHTSHH-HH-GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred HhCcHh-HH-HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH
Confidence 765322 11 1111 12233333 22210 0012567788888888876433211
Q ss_pred HHHHHhCCHHHHHHHHc------cCCHhHHHHHHHHHHHhcCCCC-HH----------HHHHHHHCCChHHHHhhcCCC-
Q 014088 264 QAIIEAGIIGPLVNLLL------NAEFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP- 325 (431)
Q Consensus 264 ~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~l~~L~~ll~~~- 325 (431)
+. .+++.+.+.+. +.++..|+.|+.+++.++.... .. ....+.. ..+...+.++
T Consensus 397 ---~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~ 468 (960)
T 1wa5_C 397 ---TN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN 468 (960)
T ss_dssp ---HH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred ---HH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence 11 13344444454 4578899999999999975421 00 1111111 1122233444
Q ss_pred --CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088 326 --DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 326 --~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
++.++..+++++.++...-. ...+ ...++.+...+.++++.|+..|..++.++...
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~--------------~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLT--------------KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSC--------------HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCC--------------HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999998875421 1111 22345555566678899999999999998864
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.33 E-value=0.00029 Score=73.43 Aligned_cols=312 Identities=10% Similarity=0.119 Sum_probs=179.1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCC---h--HH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P--KC 93 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~--~~ 93 (431)
.+.++|..+.++++...++.++......-+ ...+.+.+.++.+. .+|. ++.++..|+.||..+.... + ..
T Consensus 198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~ 273 (1023)
T 4hat_C 198 LCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLI 273 (1023)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHH
Confidence 455566666778899999999999887422 45677889999999 8884 6789999999999998632 2 12
Q ss_pred HHHHHH--cCChHHH-----------HHHh--ccccchhHHHHHHHHHHHhhcCCCCC-----C-hhhHhhhHHHHHHhh
Q 014088 94 RDLVLS--NGALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQP-----L-FEQTRPALPALERLI 152 (431)
Q Consensus 94 ~~~i~~--~~~i~~l-----------~~~l--~~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~i~~L~~lL 152 (431)
...+.. .+.+..+ -..+ ....|.+.....+.++..+....... . ......++..++.+-
T Consensus 274 ~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~ 353 (1023)
T 4hat_C 274 KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS 353 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhh
Confidence 211111 0011111 1111 12335677777777776665543110 0 111122334555655
Q ss_pred cCCChHHHHHHHHHHHHhccC---C---hHHHHHHHHhCcHHHHHHhcCCCC---------ccc---------HHHHH--
Q 014088 153 HSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPS---------PSV---------LIPAL-- 206 (431)
Q Consensus 153 ~~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~~~i~~L~~ll~~~~---------~~v---------~~~a~-- 206 (431)
..++.++...++.....++.. . ......+.. .+++.++..+..+. .++ .....
T Consensus 354 ~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~ 432 (1023)
T 4hat_C 354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS 432 (1023)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHH
Confidence 667888888888777766541 0 011111111 35555665555433 111 01111
Q ss_pred --HHHhHhhcCChhhhHHHhhcCChHHHHHHhcc-cchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHcc-
Q 014088 207 --RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLN- 281 (431)
Q Consensus 207 --~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~- 281 (431)
.+|..++.-.... .+. -.++.+.+.+.+ ..+...++.++|+++.++.+. ++.....+. .+++.|+.++..
T Consensus 433 ~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~ 507 (1023)
T 4hat_C 433 EREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKK 507 (1023)
T ss_dssp HHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhcc
Confidence 2222222111100 000 123334444443 127899999999999999853 332333333 268888888864
Q ss_pred ----CCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 282 ----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 282 ----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
+...++..++|+++.++..- .++..+ .++..|++.+..+++.++..|+++|.++++.+..
T Consensus 508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 24456678889999876532 122222 2567778878778899999999999999987664
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.30 E-value=2.8e-05 Score=68.45 Aligned_cols=187 Identities=15% Similarity=0.102 Sum_probs=138.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088 145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224 (431)
Q Consensus 145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 224 (431)
...+++-|.+++.+.+..++.-|..+...+.+....++..+++..|+......+..+...+++++.+++.+.+..-..+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34556666678888899999999996666667888899999999999999999999999999999999986543323233
Q ss_pred hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH--------h--CCHHHHHHHHc---cCCHhHHHHHH
Q 014088 225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA 291 (431)
Q Consensus 225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 291 (431)
....+..+..++.+. ...+.+.|+..|-.++..++.....+.+ . ..++.|+.+|+ ..+.+++.+|+
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 556788899999876 8999999999999998754433332222 1 23889999997 66999999999
Q ss_pred HHHHHhcCCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 014088 292 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV 332 (431)
Q Consensus 292 ~aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 332 (431)
..|-.+..+.+ .+ ....+.+.|+-..+...++.. +++++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 98887776543 22 233344556556667767654 5565544
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.23 E-value=3e-05 Score=68.27 Aligned_cols=189 Identities=12% Similarity=0.135 Sum_probs=141.0
Q ss_pred HHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH-
Q 014088 189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII- 267 (431)
Q Consensus 189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~- 267 (431)
.++..|.+.+...++.++.-|..+..........+++.+++..|+++..+. +...+..++.+++++..+ .+....++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 344555566777788899999986555566888899999999999999988 999999999999999886 55555555
Q ss_pred HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH----------CCChHHHHhhcC---CCCHHHHHHHH
Q 014088 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLN---CPDPRIVTVCL 334 (431)
Q Consensus 268 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~----------~~~l~~L~~ll~---~~~~~v~~~al 334 (431)
...++..+..++.+.+..|.+.|+..|..++.... .....+.+ ....+.|+..++ ..+.+++.+++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 45678999999998889999999999999987652 11111111 124788999997 67899999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHH
Q 014088 335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK 386 (431)
Q Consensus 335 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~ 386 (431)
..|..++........ ...+...+.+.|.-..+...+... +++++++
T Consensus 279 tLIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 999999887553221 112567788887666777766554 6777654
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.19 E-value=0.00039 Score=72.78 Aligned_cols=339 Identities=13% Similarity=0.114 Sum_probs=188.8
Q ss_pred cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
.+.+...++.++++++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-..... .-...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence 34567889999999999987543211 23344455443 335788999999999999853211111 223578
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh-HHHHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQA 180 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~ 180 (431)
+.++..+ .+ +.++..|++++.+++...+..-......++..+..++... +.+.+..+..+++.++...+ +....
T Consensus 532 ~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 532 PLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 8888888 33 7899999999999997643222233466677777777753 57889999999999876543 33332
Q ss_pred HHHhCcHHHHHHhc----CCC-CcccHH---HHHHHHhHhhcCChh---------------------hhHHHhhcCChHH
Q 014088 181 VIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALPC 231 (431)
Q Consensus 181 ~~~~~~i~~L~~ll----~~~-~~~v~~---~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~ 231 (431)
..+ .+++.+...+ ... +++.+. ..+.+++.+...-.. ....-+...+++.
T Consensus 609 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 332 3444444433 222 333333 344444444322110 0001112234555
Q ss_pred HHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH----cc-CCHhHHHHHHHHHHHhcC--CCCH
Q 014088 232 LLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LN-AEFEIKKEAAWAISNATS--GGSN 303 (431)
Q Consensus 232 L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~-~~~~v~~~a~~aL~~l~~--~~~~ 303 (431)
+..++... .+..+.+.++.++..++..-.+... ..++.++..+ .. +.+ ..++.++.++. ...+
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCc
Confidence 55555432 1467888888888887642111111 1234433332 22 222 23344444433 1111
Q ss_pred ---HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch-HHHHHHhhccHHHHHHhh
Q 014088 304 ---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENLQ 376 (431)
Q Consensus 304 ---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~l~ 376 (431)
.....+. ..++..+..++. ..+++++......+..+++.....--. ... +.. .++.+...+
T Consensus 759 ~~~~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~l 826 (963)
T 2x19_B 759 AHFPPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLAL 826 (963)
T ss_dssp TTCHHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHHT
T ss_pred chHHHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHHc
Confidence 1111111 112333333333 246899999999999999876543100 000 111 233344456
Q ss_pred cCCCHHHHHHHHHHHHHhcCC
Q 014088 377 SHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 377 ~~~~~~v~~~a~~~l~~~~~~ 397 (431)
.+++.++.+.+...+..+...
T Consensus 827 ~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 827 KFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 789999999999999888764
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.19 E-value=0.00065 Score=71.17 Aligned_cols=348 Identities=11% Similarity=0.073 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcCCChHh------------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCC-----
Q 014088 32 AVQFEAAWALTNIASGTSEN------------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD----- 89 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~------------~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~----- 89 (431)
+.....++.+..++...... ...+. .+++.++.+... .++.+...+++.+..++..
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 388 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS 388 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 66667777777666422211 11111 455666665533 4778888999888877531
Q ss_pred ----ChHHHHHHHH--cCChHHHHHHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHH
Q 014088 90 ----SPKCRDLVLS--NGALMPLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149 (431)
Q Consensus 90 ----~~~~~~~i~~--~~~i~~l~~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 149 (431)
.+.....+.. ...++.++..+....+ ...|..+..+|..++...+ ......+++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~ 465 (971)
T 2x1g_F 389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLD 465 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 1111111110 1234445555522111 1355667777777775432 223334445555
Q ss_pred HhhcC-----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHH
Q 014088 150 RLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCI 223 (431)
Q Consensus 150 ~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 223 (431)
..+.+ .+...++.++.+++.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .
T Consensus 466 ~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~ 543 (971)
T 2x1g_F 466 EAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-Y 543 (971)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----C
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-H
Confidence 55543 57788999999999998775433211111 23332222221 24788999999999998853221111 1
Q ss_pred hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCC
Q 014088 224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 301 (431)
+ ..+++.++..| + +.++..|++++.+++...........+ .++..+..++..+ +...+..+..+++.++...
T Consensus 544 l-~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 544 I-PPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp H-HHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred H-HHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 1 13455566666 2 678999999999999754544444443 3677777888774 5788899999999987643
Q ss_pred C-HHHHHHHHH--CCChHHHHhhcCCC--CHHHH---HHHHHHHHHHHHhhhhhhhcCCCC--CcchHHHHHHhhccHHH
Q 014088 302 S-NEQIKFLVS--QGCIKPLCDLLNCP--DPRIV---TVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEK 371 (431)
Q Consensus 302 ~-~~~~~~l~~--~~~l~~L~~ll~~~--~~~v~---~~al~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 371 (431)
. .+...++.. ..++..+...++.. +++.+ ..++..|..++..-.........+ ....+...+. ..++.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 695 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPI 695 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHH
Confidence 2 233333322 11233333333332 33222 334455555544322110000000 0111233332 33555
Q ss_pred HHHhhc-C-CCHHHHHHHHHHHHHh
Q 014088 372 IENLQS-H-DNTEIYEKAVKILETY 394 (431)
Q Consensus 372 l~~l~~-~-~~~~v~~~a~~~l~~~ 394 (431)
+..++. . .+.++.+.+.+++...
T Consensus 696 l~~~l~~~~~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 696 FKRIAEMWVEEIDVLEAACSAMKHA 720 (971)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Confidence 555543 2 4778888888888763
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.18 E-value=0.00032 Score=73.51 Aligned_cols=291 Identities=12% Similarity=0.021 Sum_probs=164.1
Q ss_pred CChHHHHHHHHHHHHHcCCChH-hHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhcCCChHH-H--
Q 014088 29 CFGAVQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKC-R-- 94 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~~l~~~~~~~-~-- 94 (431)
++++++..|+.++..+....+. .+...+. .+++.++. .+...+ +......++.+..++...... .
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998863221 1111111 12333333 223334 366666677777666332211 1
Q ss_pred ---------HHHHHcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCC--------CCCChh----hHhhhHHHHH
Q 014088 95 ---------DLVLSNGALMPLLAQFNE----HAKLSMLRNATWTLSNFCRGK--------PQPLFE----QTRPALPALE 149 (431)
Q Consensus 95 ---------~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~i~~L~ 149 (431)
..+. ..++.++..... ..++++...+++.+..++... ...... ....+++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 233444444322 247788999999888876521 011111 2234445555
Q ss_pred HhhcCC-C--------------hHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCC-----CCcccHHHHHHH
Q 014088 150 RLIHSN-D--------------DEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRT 208 (431)
Q Consensus 150 ~lL~~~-~--------------~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~ 208 (431)
..+..+ + ...|..+..++..++...++ .... +++.+...+.. .++..++.++.+
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYS 487 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 444322 1 13566677777776655432 2221 12223333322 577889999999
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHh---c--ccchhhHHHHHHHHHHHhhcC---CHHHHHHHHHhCCHHHHHHHHc
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLL---T--QNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLL 280 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL---~--~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~ 280 (431)
++.++.+...... ..++.+++++ . +. ++.+|..++|+++.++.. .++... .+++.++..+
T Consensus 488 l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l- 555 (971)
T 2x1g_F 488 FQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL- 555 (971)
T ss_dssp HHHTTTC-----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-
T ss_pred HHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-
Confidence 9999876543221 2334444433 2 23 689999999999998851 122111 2466666666
Q ss_pred cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 014088 281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 281 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~ 343 (431)
+ +.++..|++++.+++.........++ ..++..+..++.. .+.+.+..++.++..++..
T Consensus 556 ~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 556 N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2 78999999999999976543433333 2367777777776 3578888999999999864
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.14 E-value=0.00017 Score=75.48 Aligned_cols=251 Identities=10% Similarity=0.087 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCC--h-----------H
Q 014088 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDS--P-----------K 92 (431)
Q Consensus 32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~--~-----------~ 92 (431)
..|..|..+|..++.... +.+.. -+++.+.+.+. +.++..++.|+.+++.++... . .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 466677777777775322 11111 13334444444 467889999999999997431 1 1
Q ss_pred HHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 014088 93 CRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 169 (431)
Q Consensus 93 ~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 169 (431)
....+ ...++..+ .++ ++-+|..++|+++.++..- .......+++.++..+.+++..|+..|+++|.+
T Consensus 452 l~~~l-----~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 452 VVDFF-----TKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEK 522 (960)
T ss_dssp HHHHH-----HHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 11110 11233334 334 7899999999999999863 234567889999999998889999999999999
Q ss_pred hccCC-----------hHHHHHHHHhCcHHHHHHhcCCCC-----cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHH
Q 014088 170 LSDGT-----------NDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 233 (431)
Q Consensus 170 l~~~~-----------~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 233 (431)
++... ........ ..+++.|..++.... ......++.++..++............ .+++.+.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~ 600 (960)
T 1wa5_C 523 ILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFI 600 (960)
T ss_dssp HTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHH
T ss_pred HHhcccccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHH
Confidence 88641 11111111 145666667766531 113345666666654322111111111 1233333
Q ss_pred HHh----cccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 234 DLL----TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 234 ~lL----~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
..+ +++.+...+..++.+++.++.. .++....+. ..++|.+..++.....+....+..++..+.
T Consensus 601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 333 3443567777788888888874 444444433 346788888887665556655655555443
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.11 E-value=0.0053 Score=64.81 Aligned_cols=314 Identities=11% Similarity=0.134 Sum_probs=172.3
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCC--hH---H
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDS--PK---C 93 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~---~ 93 (431)
.+.+++..++++.++..++.++.+....-+ ...+.+..+++.+.. ++ .++.++..++.+|..+.... +. .
T Consensus 198 ~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~ 273 (1049)
T 3m1i_C 198 LCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLI 273 (1049)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhH
Confidence 345566666677899999999998776333 233555677777773 44 37899999999999988542 21 1
Q ss_pred HHHHHH--cCChHHHHH-H----------h--ccccchhHHHHHHHHHHHhhcCC------CCCChhhHhhhHHHHHHhh
Q 014088 94 RDLVLS--NGALMPLLA-Q----------F--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLI 152 (431)
Q Consensus 94 ~~~i~~--~~~i~~l~~-~----------l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL 152 (431)
...+.. .+.+..+.. + + ..+.+.+.....+..+..+.... +.........+++.++.+.
T Consensus 274 ~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~ 353 (1049)
T 3m1i_C 274 KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS 353 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Confidence 111111 111221111 0 1 01224444455555554433210 1111222355677777777
Q ss_pred cCCChHHHHHHHHHHHHhcc----CC--hHHHHHHHHhCcHHHHHHhcCCCC--------c--------------ccHHH
Q 014088 153 HSNDDEVLTDACWALSYLSD----GT--NDKIQAVIEAGVCPRLVELLRHPS--------P--------------SVLIP 204 (431)
Q Consensus 153 ~~~~~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~~~i~~L~~ll~~~~--------~--------------~v~~~ 204 (431)
..++.++...++..+..++. .+ ......+.. .+++.++..+..++ + ..+..
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~ 432 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS 432 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHH
Confidence 77788998888888877765 21 111111211 34555555553321 0 11223
Q ss_pred HHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc-cchhhHHHHHHHHHHHhhcCCHHH-HHHHHHhCCHHHHHHHHcc-
Q 014088 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLN- 281 (431)
Q Consensus 205 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~- 281 (431)
+..+|..++...+...-. -+.+.+.+.+.. ..++..++.++++++.++...... ...+.. .+++.+..+...
T Consensus 433 ~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 433 EREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSS
T ss_pred HHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhh
Confidence 455555555322211111 123444444542 226788999999999998643222 112111 244445544332
Q ss_pred ----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 282 ----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 282 ----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
+.+.++..++++++.++..-. .....+. .+++.+++.+.++++.++..|+.+|.++++.+..
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~-~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHH-HCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 244555578899997764211 1112222 2577788888888899999999999999987653
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.92 E-value=0.001 Score=69.42 Aligned_cols=144 Identities=9% Similarity=0.031 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 103 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 103 (431)
.+...++.++++++.++....+....-.-..+++.|+.++.. +...++..++|+++.++..-......+. ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 568999999999999997554332211112467778887753 2345566788999998742111111111 133
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCC--------CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
..+++.+ ..+++.++..|++++.++|..... ........++..+...+..-+.+-+..+..+++.+....+
T Consensus 543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 543 LKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 4444445 455688999999999999985211 1111234455555555555677778889999998887644
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.87 E-value=0.00081 Score=70.38 Aligned_cols=297 Identities=11% Similarity=0.035 Sum_probs=156.2
Q ss_pred ChHHHHHHHHHHHHHcCCCh-Hh-HHH---HHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-------HH
Q 014088 30 FGAVQFEAAWALTNIASGTS-EN-TRV---VID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------RD 95 (431)
Q Consensus 30 ~~~~~~~a~~~L~~l~~~~~-~~-~~~---~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~ 95 (431)
+++++..|+.++..+..... .. ... +.. .+..+.+.+.+...+.......+..+..+....+.. ..
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence 57889999999999987432 11 111 111 011222222233345555556666666655321110 01
Q ss_pred HHHHcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCCCC-------Ch----hhHhhhHHHHHHhhcCCCh---
Q 014088 96 LVLSNGALMPLLAQFNE----HAKLSMLRNATWTLSNFCRGKPQP-------LF----EQTRPALPALERLIHSNDD--- 157 (431)
Q Consensus 96 ~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~~~-------~~----~~~~~~i~~L~~lL~~~~~--- 157 (431)
.+. ..++.++..... ..++++...++.....++...... .. .....+++.++..+..++.
T Consensus 332 ~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~ 409 (963)
T 2x19_B 332 SFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEY 409 (963)
T ss_dssp HHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 111 234444444422 234555566666656665521110 01 1113334444444432211
Q ss_pred ------------HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc----CCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088 158 ------------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVGNIVTGDDMQTQ 221 (431)
Q Consensus 158 ------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~l~~l~~~~~~~~~ 221 (431)
+.|..+..+|..++...+.. +. .-+++.+...+ .+.++..+..++.+++.++.+.....
T Consensus 410 ~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~- 484 (963)
T 2x19_B 410 GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY- 484 (963)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-
Confidence 12444555555544322111 00 01223333444 45677788999999999987644221
Q ss_pred HHhhcCChHHHHHHh---cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088 222 CIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298 (431)
Q Consensus 222 ~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 298 (431)
...++.+++.+ ..+ ++.+|..++|+++.++..-.... ..+ ..+++.++..+.+ +.|+..|++++.+++
T Consensus 485 ----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~ 555 (963)
T 2x19_B 485 ----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKIC 555 (963)
T ss_dssp ----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence 13344444444 334 67899999999999875211111 222 3578888888854 799999999999998
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 014088 299 SGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG 344 (431)
Q Consensus 299 ~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~ 344 (431)
.........++ ..++..+..++.. -+...+..+++++..++...
T Consensus 556 ~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 556 RECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 64321111111 1245555556654 25678888899999988643
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.76 E-value=0.00037 Score=72.48 Aligned_cols=306 Identities=10% Similarity=0.003 Sum_probs=168.9
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC--hHHHHHHHHcCChHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMP 105 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~ 105 (431)
+.++.++..++.++......-+ ...+++.+.++.+.++|.. +.++..|+.+|..+.... +..+..++..=.+..
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 3567899999999999987432 3456667888889988865 799999999999998433 332222222101122
Q ss_pred HHHHhcc-ccchhHHHHHHHHHHHhh------cCCCC-CC-------hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088 106 LLAQFNE-HAKLSMLRNATWTLSNFC------RGKPQ-PL-------FEQTRPALPALERLIHSNDDEVLTDACWALSYL 170 (431)
Q Consensus 106 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 170 (431)
++..+.. ..|.+..+..+..+..++ ...+. .. .....++++.++.++.+++.++-..++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 2222212 456666655554443322 11121 01 133467899999999998888877777666654
Q ss_pred ccC----C-----hHHHHHHHHhCcHHHHHHhcCCCC-----c-----------ccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088 171 SDG----T-----NDKIQAVIEAGVCPRLVELLRHPS-----P-----------SVLIPALRTVGNIVTGDDMQTQCIIN 225 (431)
Q Consensus 171 ~~~----~-----~~~~~~~~~~~~i~~L~~ll~~~~-----~-----------~v~~~a~~~l~~l~~~~~~~~~~~~~ 225 (431)
... . ......++. .+++.++..+..++ . +.|......+..++.-.+......+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 421 0 111111221 45555555554321 1 12322222222222211111111000
Q ss_pred cCChHHHHHHhc---ccchhhHHHHHHHHHHHhhcCCHHHHHHHH-H----hCCHHHHHHHHc-----cCCHhHHHHHHH
Q 014088 226 HQALPCLLDLLT---QNYKKSIKKEACWTISNITAGNVNQIQAII-E----AGIIGPLVNLLL-----NAEFEIKKEAAW 292 (431)
Q Consensus 226 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~ 292 (431)
.-+.+.+.+.+. +. ++..++.++.+++.++.+......... . ..+++.+..++. .+++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 011122223332 23 688899999999999875322111000 0 013455555655 568899999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHH----HHh--hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 293 AISNATSGGSNEQIKFLVSQGCIKP----LCD--LLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 293 aL~~l~~~~~~~~~~~l~~~~~l~~----L~~--ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
+++..+..-.. ....++. +++ -+..+++.++..|..++.++++.+..
T Consensus 518 ~l~rys~~~~~-------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDY-------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGT-------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhc-------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 99998764310 1223444 444 44456778999999999999987764
No 97
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.71 E-value=0.011 Score=61.61 Aligned_cols=315 Identities=12% Similarity=0.130 Sum_probs=173.1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLV 97 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i 97 (431)
.+.++|..+.++++...++.++..+...-+ ...+++.+.++.+ ..+| .++.++..|+.||..+... .++....+
T Consensus 210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~ 285 (1073)
T 3gjx_A 210 LCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQF 285 (1073)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHH
Confidence 344566667788888999999999887433 4567888999988 4676 4678999999999998753 22222222
Q ss_pred HH--cCChHHHHHHh------------ccccchhHHHHHHHHHHHhhcCCCC-----CC-hhhHhhhHHHHHHhhcCCCh
Q 014088 98 LS--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGKPQ-----PL-FEQTRPALPALERLIHSNDD 157 (431)
Q Consensus 98 ~~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~~~-----~~-~~~~~~~i~~L~~lL~~~~~ 157 (431)
.. ...+..+-.++ ....+.+.....+.++..+.+.... .. ......++..++.+-..++.
T Consensus 286 ~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ 365 (1073)
T 3gjx_A 286 ETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEET 365 (1073)
T ss_dssp HHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcH
Confidence 11 01111111222 1222445666666666665543200 00 11122344445666667888
Q ss_pred HHHHHHHHHHHHhccC----C------------------hHHHHHH--HHhCcHHHHHHhcCCCCc---------c-cHH
Q 014088 158 EVLTDACWALSYLSDG----T------------------NDKIQAV--IEAGVCPRLVELLRHPSP---------S-VLI 203 (431)
Q Consensus 158 ~v~~~a~~~L~~l~~~----~------------------~~~~~~~--~~~~~i~~L~~ll~~~~~---------~-v~~ 203 (431)
++.+.++.....+... . +.+...+ +-..+...++..+..+.. + +|.
T Consensus 366 ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re 445 (1073)
T 3gjx_A 366 EIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE 445 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence 9988888776655421 0 0111100 011233334444443321 0 100
Q ss_pred ------------HHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcC-CHH-HHHHHHH
Q 014088 204 ------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVN-QIQAIIE 268 (431)
Q Consensus 204 ------------~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~~ 268 (431)
..-.++..++.-....... -.++.+.+.+..+ .+....+.++|+++.++.. .++ ....+.+
T Consensus 446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 1111222222111111111 1233344333332 2588899999999999864 222 2233332
Q ss_pred hCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 269 AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 269 ~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
+++.|+.+...+ ...++...+++++.....-. ...+.+. .++..|++.+...++.++..|+.++..++..
T Consensus 522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~-~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR-AHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH-HCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH-hCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 677777777654 23456667788888754311 1122222 2678888888888999999999999999988
Q ss_pred hhhh
Q 014088 344 GEAE 347 (431)
Q Consensus 344 ~~~~ 347 (431)
+...
T Consensus 597 C~~~ 600 (1073)
T 3gjx_A 597 CRRH 600 (1073)
T ss_dssp TGGG
T ss_pred HHHH
Confidence 8764
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.69 E-value=0.003 Score=65.68 Aligned_cols=342 Identities=12% Similarity=0.072 Sum_probs=183.6
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHH-HhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVV-IDHG----AVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVL 98 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 98 (431)
.+.+..+.++.+|+.++.........+ -... +++.+..+++ .+++.++..++++++..+..-..
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------ 528 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ 528 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------
Confidence 346888999999999987543221111 0112 3444555544 57899999999999998854221
Q ss_pred HcCChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-----C------------
Q 014088 99 SNGALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-----D------------ 156 (431)
Q Consensus 99 ~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-----~------------ 156 (431)
....+++++..+.. +++..++..|+.++.++++............++..+..+|... +
T Consensus 529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 22456666666544 5678899999999999998764333233344555555555521 1
Q ss_pred ----hHHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHH----HhcCCCCcc-----cHHHHHHHHhHhhcCChhh-
Q 014088 157 ----DEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLV----ELLRHPSPS-----VLIPALRTVGNIVTGDDMQ- 219 (431)
Q Consensus 157 ----~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~----~ll~~~~~~-----v~~~a~~~l~~l~~~~~~~- 219 (431)
.+-+.....+++.+... +++.....++ .+++.++ ..+...... -....+.+++.++.+.+..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 12355566667666532 3333332332 3334433 334322111 1224567778887654221
Q ss_pred -----hHHHhhcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHH
Q 014088 220 -----TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAA 291 (431)
Q Consensus 220 -----~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~ 291 (431)
....+. .+.+.+...+. .. +..+|..++.++.++...-.... ...+|.++..+-.. +..-....+
T Consensus 688 ~~~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~~e~~~fL 760 (980)
T 3ibv_A 688 SEEVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDMNELVDVL 760 (980)
T ss_dssp -CCCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCTTTHHHHH
T ss_pred CCCCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 111111 34455555554 33 68899999999999987433322 23577777766533 344445667
Q ss_pred HHHHHhcCCCCHHHHHHHHH--CCChHHHHhhcCCCC---------HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHH
Q 014088 292 WAISNATSGGSNEQIKFLVS--QGCIKPLCDLLNCPD---------PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA 360 (431)
Q Consensus 292 ~aL~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~---------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 360 (431)
+.++.+...-..+....+.+ .-++.++..++..+. ..+++.-+..+..++.++-..
T Consensus 761 ~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~------------- 827 (980)
T 3ibv_A 761 SFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGS------------- 827 (980)
T ss_dssp HHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTG-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchh-------------
Confidence 77777765333232222211 124555666666432 224444445555555533111
Q ss_pred HHHHhh--c----cHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088 361 QAIDDA--E----GLEKIENL-QSHDNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 361 ~~l~~~--~----~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~ 397 (431)
..+.+. + .+..+... ...+++..++.|..++.++...
T Consensus 828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 011111 1 23334433 2347888899998888886554
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.67 E-value=0.022 Score=60.08 Aligned_cols=309 Identities=14% Similarity=0.093 Sum_probs=164.6
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC---
Q 014088 62 PIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--- 137 (431)
Q Consensus 62 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--- 137 (431)
+.+...++. .+..++..++.++.+.....+. ..+.....++.+.+.+. .+++++..|+.+|..+........
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~ 272 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDL 272 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhh
Confidence 334444443 5678899999999887765442 23455555666663332 278899999999999987741111
Q ss_pred h-hhHhhhHHHHHHhh------------------cCCChHHHHHHHHHHHHhccC-------ChHHHHHHHHhCcHHHHH
Q 014088 138 F-EQTRPALPALERLI------------------HSNDDEVLTDACWALSYLSDG-------TNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 138 ~-~~~~~~i~~L~~lL------------------~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~ 191 (431)
. ......++.++..+ .+.+.+.....+..+..+... .+.... .+ ..+++.++
T Consensus 273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l-~~~l~~ll 350 (1049)
T 3m1i_C 273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE-LL-LNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH-HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH-HH-HHHHHHHH
Confidence 1 11112222222211 122445555555555443321 111111 11 14566666
Q ss_pred HhcCCCCcccHHHHHHHHhHhhc----CC--hhhhHHHhhcCChHHHHHHhcccc------------------h---hhH
Q 014088 192 ELLRHPSPSVLIPALRTVGNIVT----GD--DMQTQCIINHQALPCLLDLLTQNY------------------K---KSI 244 (431)
Q Consensus 192 ~ll~~~~~~v~~~a~~~l~~l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~------------------~---~~v 244 (431)
.+...++..+...++..+..++. .. .......+. .+++.++..+..+. + ...
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 76677777888888887777765 11 111111211 23444444442210 0 023
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--CCHhHHHHHHHHHHHhcCCCCHHHHHH-HHHCCChHHHHhh
Q 014088 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKF-LVSQGCIKPLCDL 321 (431)
Q Consensus 245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~l~~L~~l 321 (431)
++.+..+|..++...+...-.. +.+.+-+.+.. .++..++.++++++.++.......... +.+ +++.+..+
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~--v~~~l~~l 503 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH--HHHHHHHH
Confidence 4455666666664222211111 23444445543 478899999999999987554332222 222 44444443
Q ss_pred cCC-----CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 322 LNC-----PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 322 l~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
... +++-++..+++++.++...-... ...+. ..++.|...++++++.|+..|..++.++..
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~------------~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAH------------WNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC------------HHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhH------------HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 322 22334445778888766433221 11222 234556666778899999999999988776
Q ss_pred C
Q 014088 397 E 397 (431)
Q Consensus 397 ~ 397 (431)
.
T Consensus 570 ~ 570 (1049)
T 3m1i_C 570 K 570 (1049)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00098 Score=58.69 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=126.1
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCC-----hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH----
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---- 176 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---- 176 (431)
+-..| .+.++..|..|+.-|..+....+... ........+.+...+.+.+..++..++.++..++.....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55667 78899999999999988876542211 112345567777888999999999999999888753211
Q ss_pred -HHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088 177 -KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 254 (431)
Q Consensus 177 -~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 254 (431)
......-..+++.++.- +.+....++..+..++..++...... . .+++.+...+.+. ++.++..++..|.+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11111222566777764 77888889999988888776543211 1 1245677778888 99999999988888
Q ss_pred hhcC-CHH--HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 255 ITAG-NVN--QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 255 l~~~-~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
+... ... .....+. .+++.+..++.+.+..||..|..++..+...-
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 7641 010 0111112 24566788889999999999999999887654
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.51 E-value=0.00089 Score=62.75 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=153.9
Q ss_pred hccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHHHhcCCChH
Q 014088 25 FFSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLL--SS--------PTDDVREQAVWALGNVAGDSPK 92 (431)
Q Consensus 25 L~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~--------~~~~v~~~a~~~L~~l~~~~~~ 92 (431)
|. ++..++|..|+.+|..+...... .+....+..+.-.++-.+ .. .-..||+.|+.+|+.+ ..-+.
T Consensus 183 LF-dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~ 260 (800)
T 3oc3_A 183 LL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG 260 (800)
T ss_dssp TT-CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred hc-CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence 44 45679999999999988652211 011001113333333333 11 1268899999999999 55443
Q ss_pred HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014088 93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 172 (431)
Q Consensus 93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 172 (431)
. ..++..++..+ ..+.++++.-++-.|.++ .+--. ...++++.++..|++.+.+|+..|+.+|..++
T Consensus 261 e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA- 327 (800)
T 3oc3_A 261 P------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP- 327 (800)
T ss_dssp S------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred h------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence 1 23444455444 667899999999999999 22111 15788999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCC-CC-cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088 173 GTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250 (431)
Q Consensus 173 ~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 250 (431)
.++... .++..+...|.+ ++ ..-....+..|+.|+..+.. .......+|.|...+.++ -..||..++.
T Consensus 328 -~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~ 397 (800)
T 3oc3_A 328 -ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILN 397 (800)
T ss_dssp -CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHH
T ss_pred -chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHH
Confidence 333333 345666666654 22 23344567777777765531 112347899999999999 9999999999
Q ss_pred HHHHhhcCCHHHHHHHHHhCCHHHHH-HHHccCCHhHHHHHHHHHH
Q 014088 251 TISNITAGNVNQIQAIIEAGIIGPLV-NLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 251 ~L~nl~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~ 295 (431)
++..+. +... +..+. .+|-.++.+++..+..+..
T Consensus 398 TL~tfL--~~~~---------LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 398 MVKNLS--EESI---------DFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HTTTCC--CHHH---------HHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHH--hhhH---------HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 998877 2222 22233 3445567888888877774
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0033 Score=55.25 Aligned_cols=188 Identities=11% Similarity=0.124 Sum_probs=124.5
Q ss_pred HHHhcCCCCcccHHHHHHHHhHhhcCChhhh--HHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC------
Q 014088 190 LVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------ 259 (431)
Q Consensus 190 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 259 (431)
+-.-|.+.++..|..++..+..+........ .... -....+.+.+.+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577889999999999999988776543211 1111 123456677788888 9999999999999887521
Q ss_pred HHHHHHHHHhCCHHHHHHH-HccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 260 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 260 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
.......+ ..+++.|+.= +.+....++..+..++..++....+. . .+++.+...++.+++.++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111222 2356767754 66778889999998888876543210 0 13566777888999999999999999
Q ss_pred HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
+++....... .+ ....+. ..++.+..++++.+++||..|..++-.++.
T Consensus 165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987643211 00 111121 234457778899999999999998866543
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.40 E-value=0.004 Score=53.61 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=121.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhh----cCC
Q 014088 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGK 133 (431)
Q Consensus 61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~ 133 (431)
=+.+...|-+.+..-+..++..|.......+. .+.. .+..+++.+. .+++..+...++.+|..+. ...
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555556666777777777777765543332 2221 3333444331 3567888888887777764 322
Q ss_pred CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088 134 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213 (431)
Q Consensus 134 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 213 (431)
..........++|.|+.-+.++...+|..+-.++..+....+.. .+++.+..-+.+.++.++..++..+..+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 22233334678999999999999999998888887665422211 35577888888899999999999999987
Q ss_pred cCChhhhHHHhhcCCh---HHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088 214 TGDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA 257 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 257 (431)
...... ....+ +.+.+++.++ +..||..|..++..+-.
T Consensus 196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 543322 23567 9999999998 99999999999887654
No 104
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.37 E-value=0.011 Score=51.79 Aligned_cols=309 Identities=18% Similarity=0.165 Sum_probs=177.8
Q ss_pred HHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHH
Q 014088 41 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120 (431)
Q Consensus 41 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~ 120 (431)
|.++..+.+...+.++..+++..+....+=++.++.+.....|...+....-+. .--...++.++..+..+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence 445566688889999999999999999999999999999999998875432211 111235788888888888999999
Q ss_pred HHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCC-------ChHHHHH-------HHHHHHHhcc------C------
Q 014088 121 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN-------DDEVLTD-------ACWALSYLSD------G------ 173 (431)
Q Consensus 121 ~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~-------~~~v~~~-------a~~~L~~l~~------~------ 173 (431)
.....|+|...+. +........+.++.|...+... +..-+.. +++++.|... +
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 9999999999886 4445555578888888766421 2333344 4444444321 1
Q ss_pred ChHHHH---HHHHhCcHHHHHHhcCCCCc------ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh--
Q 014088 174 TNDKIQ---AVIEAGVCPRLVELLRHPSP------SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-- 242 (431)
Q Consensus 174 ~~~~~~---~~~~~~~i~~L~~ll~~~~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-- 242 (431)
.+...+ .+++.+++..|+..|+-+.- +.|...++.+--+.+... .-+ +.++....+....
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~-~Pk--------d~~l~VtDd~rk~NL 494 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPF-VPK--------DGVLNVIDENRKENL 494 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTT-SCC--------TTGGGCCCTTTCCCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCC-Cch--------hhhccccchhhhhhh
Confidence 111112 24444677788888765432 334455554444433221 000 0112222221112
Q ss_pred --hHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088 243 --SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319 (431)
Q Consensus 243 --~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 319 (431)
.+...-+|+.+.=.. ...+.++.+++. .+..|+.+++.-..+.+ ++..+.. +..=.
T Consensus 495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~q--VAh~~Ys------------------IsCPL 553 (619)
T 3c2g_A 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEKE--VAQYSYS------------------IDCPL 553 (619)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHHH--HHHTTTT------------------SCCGG
T ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHHH--HHhheee------------------ccCch
Confidence 223333444443332 235566666664 55666666644311111 1111111 22223
Q ss_pred hhcCCC--CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 320 DLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 320 ~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
++++.. .|.....++..--++++.+.-... .. .---..++-+.+|.|+++.+.|..+|.++-
T Consensus 554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad-------------~W-~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRAD-------------IW-TIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHH-------------HS-CCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred hhhcccccChHHHHHHHHHHHHHHHhCcchhc-------------cc-eechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 566544 455556666666666666543211 11 112344667789999999999999988764
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.36 E-value=0.014 Score=51.47 Aligned_cols=213 Identities=12% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH----HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 014088 53 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 128 (431)
Q Consensus 53 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 128 (431)
+.+...+.+..|+..|..-+-+.|..+..++.++.+.... ..+.+.. -...+..++..-.++++.-.+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4455679999999999998999999999999999765422 2233332 234444444334467777778888888
Q ss_pred hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCcccHHHH
Q 014088 129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA 205 (431)
Q Consensus 129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a 205 (431)
..++..........+.+-.+.+.++.++-++...|..++..+..........+... .++.....++.+++.-+++.+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 88775444444455666678888899999999999999998876655444444443 467778889999999999999
Q ss_pred HHHHhHhhcCCh--hhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CCHHHHHHHHH
Q 014088 206 LRTVGNIVTGDD--MQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIE 268 (431)
Q Consensus 206 ~~~l~~l~~~~~--~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~ 268 (431)
+..|+.+..... ......+ +..-+..++.+|++. ...++.+|.-++--+.. .++.....++.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK 297 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence 999999986533 2222222 445688999999999 89999999988887765 23444444443
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0016 Score=56.00 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=120.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHH
Q 014088 147 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCI 223 (431)
Q Consensus 147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~ 223 (431)
.+...+-+.|..-+..++..|.......+.......+ .+++.+.-.+.+.+..+...++.++..+...-.. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4455566677777777777777655443322211111 1233333334467788888888888776421100 00000
Q ss_pred hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088 224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 302 (431)
Q Consensus 224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 302 (431)
--.-++|.|++-+-++ .+.+|..+-.++..++. ..+. .+++.+++-+.+.++++|.+++..+..+....+
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1124679999999888 88899988877776654 2222 256667777888899999999999999975432
Q ss_pred HHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088 303 NEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 303 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 345 (431)
.. ....+ +.+..++.++|..++..|+.++..+....+
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 12 23467 999999999999999999999998876543
No 107
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.32 E-value=0.057 Score=45.47 Aligned_cols=188 Identities=12% Similarity=0.128 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHH----h---cCCCCc-----ccHHHHHHHHhHhhcCChhhhHH
Q 014088 156 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVE----L---LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~----l---l~~~~~-----~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
+++.|+.|+.-|+.--+..++-...+-. .|.+..+++ . +..+.- .-..+++..+..++.+ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 4556777776666544433333332222 254444432 2 222221 1124455566666664 456677
Q ss_pred HhhcCChHHHHHHhccc----chhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088 223 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297 (431)
Q Consensus 223 ~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 297 (431)
++++.+.-.|...|+.. +-+.+|..++.+++.+.. .+++.+..+.+.+++|..++.++.++.--|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 88888887888888544 147889999999999997 6789999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHH--------CCChHHHHh-hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088 298 TSGGSNEQIKFLVS--------QGCIKPLCD-LLNCPDPRIVTVCLEGLENILKAGEA 346 (431)
Q Consensus 298 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~ 346 (431)
.... ....++.. ..++..++. +.+.+++.+.++++++-.++..+...
T Consensus 173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 8643 33333322 123444443 33567888888888888888766554
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.31 E-value=0.00014 Score=62.31 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088 20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 81 (431)
Q Consensus 20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~ 81 (431)
.++.-|..++++.+|..++..+. ...+..+++++++.+|..++.
T Consensus 53 ~l~~~ll~d~~~~VR~~AA~~l~------------------~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 53 HLAVQYLADPFWERRAIAVRYSP------------------VEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSC------------------GGGGGGGTTCSSHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHhCC------------------HHHHHHHccCcCHHHHHHHHH
Confidence 34445667888899998887431 223455556666666666554
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.27 E-value=0.051 Score=56.74 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC---CHhHHHHHHHHHHHhcCCC-------CHHHHHHHHH
Q 014088 242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVS 311 (431)
Q Consensus 242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~ 311 (431)
+.+..-....+..+.....+....+.+. ++..-+++++.+ .|+.|..-...+..+..++ ++.+.+.
T Consensus 800 ~evL~l~s~iv~k~~~~~~~~~~~il~~-vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~--- 875 (1073)
T 3gjx_A 800 PEVLSTMAIIVNKLGGHITAEIPQIFDA-VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL--- 875 (1073)
T ss_dssp THHHHHHHHHHHHHGGGTGGGHHHHHHH-HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH---
Confidence 4444444444444443333334444443 555566677644 6788877777777665443 2333333
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH----hhcCCCHHHHHHH
Q 014088 312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKA 387 (431)
Q Consensus 312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~----l~~~~~~~v~~~a 387 (431)
+++.++-.++..++++...++.++..++.......+ +...+-+.-+...+.+ +.........+.-
T Consensus 876 --~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~---------~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q 944 (1073)
T 3gjx_A 876 --VLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMH 944 (1073)
T ss_dssp --HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHH
T ss_pred --HHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHH
Confidence 466667777889999999999999999876543211 3333444444444333 3445555555555
Q ss_pred HHHHHHhcCCC
Q 014088 388 VKILETYWVEE 398 (431)
Q Consensus 388 ~~~l~~~~~~e 398 (431)
..+|..+|.--
T Consensus 945 ~~il~~l~~~~ 955 (1073)
T 3gjx_A 945 ASILAYMFNLV 955 (1073)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.24 E-value=0.00065 Score=63.62 Aligned_cols=246 Identities=15% Similarity=0.114 Sum_probs=153.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc--CChHHHHHHhc---------cccchhHHHHHHHHHHH
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN---------EHAKLSMLRNATWTLSN 128 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~l~~~l~---------~~~~~~~~~~a~~~L~~ 128 (431)
+.+.|+.-|-++.+++|..|+.+|..+.+............ ...-.++-.+. ..--.++|+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45677777778999999999999999864221100000001 12222333331 11235799999999999
Q ss_pred hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088 129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 208 (431)
Q Consensus 129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 208 (431)
+ .+-+.. ..++..++..+..+..+++..++-.|.++..--.. -.++++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC------HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 554443 24455555566778899999999999998211111 12667888888999999999999999
Q ss_pred HhHhhcCChhhhHHHhhcCChHHHHHHhcccch-hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHH
Q 014088 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 287 (431)
Q Consensus 209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 287 (431)
|.-++ .+.... .++..+...|.+-.+ ..-.......|+.++..... .......+|.|..++.+.-+.||
T Consensus 323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99988 222222 233444444433201 12233444555565543211 01113578999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088 288 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338 (431)
Q Consensus 288 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~ 338 (431)
..++.++..+. .....+.+.+ +++-.++.+++..+..+..
T Consensus 393 ~AVL~TL~tfL---~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFLVAE--------VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence 99999999887 2233333222 4555678888877776653
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.21 E-value=0.038 Score=48.69 Aligned_cols=200 Identities=15% Similarity=0.079 Sum_probs=142.1
Q ss_pred HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh----hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 254 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 254 (431)
+.+...+++..|+..|..-+.+.|..+..++.++.+.... ....+.+ -.+.+..++..-.++++...+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 3456668889999999988889999999999998875432 2222222 122233333222245666666667777
Q ss_pred hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 014088 255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT 331 (431)
Q Consensus 255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~ 331 (431)
++.+ +.....++..+.+..+.+.++.++.++...|..++..+...+. .....++.. .+......++.+++.-++.
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 7776 7778888888888899999999999999999999999987654 333344433 3466777889999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391 (431)
Q Consensus 332 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 391 (431)
.++..|+.++-....... ....+.+..-+..+..|+.+++..++-.|=.+.
T Consensus 228 QSlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe
Confidence 999999999976554432 345566666777788888888877765554443
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.00 E-value=0.044 Score=46.15 Aligned_cols=101 Identities=17% Similarity=0.073 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC-----HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-----FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 322 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 322 (431)
|+..+..++.+ ++.+..+++.++.-.|..+++..+ ..+|-.++.+++.+....+++....+.+.++++...+.+
T Consensus 76 aLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 76 ALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 33444455555 888999999999888888887652 568899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088 323 NCPDPRIVTVCLEGLENILKAGEAEKN 349 (431)
Q Consensus 323 ~~~~~~v~~~al~~L~~l~~~~~~~~~ 349 (431)
+.++.-.+..|..++.+++..+...+-
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~Y 181 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAY 181 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHH
Confidence 999999999999999999987776554
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.91 E-value=0.025 Score=52.31 Aligned_cols=248 Identities=14% Similarity=0.068 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHH
Q 014088 71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 150 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 150 (431)
++...++.|+..+.....+-|..++. ++..++.+. .+.+..+|..|...|..+|++ .....+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57889999999999999888876655 577899999 788999999999999999987 336788899999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcCCh
Q 014088 151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL 229 (431)
Q Consensus 151 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l 229 (431)
+|+..++.-...+-++|..+...++.. .+..+...+..+++.+|..++..|..-... .......-++.-++
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 999998888888888888777666532 223333333335678888888888554322 11111122222345
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHc------cCCHhHHHH----HHHHHHHhc
Q 014088 230 PCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLL------NAEFEIKKE----AAWAISNAT 298 (431)
Q Consensus 230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~----a~~aL~~l~ 298 (431)
..+.+.|++- ...--.-....|..+-. .+....+.+++ .+.+... ..|.+.... +-.|+--++
T Consensus 180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 5566666554 33333344445554443 33444444432 2333221 123333322 333333333
Q ss_pred CCC-CHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhh
Q 014088 299 SGG-SNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGE 345 (431)
Q Consensus 299 ~~~-~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~ 345 (431)
... +.....++.+ .+++.+-.+-.. ...+.+...+.++.-++..+.
T Consensus 254 ~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 254 KNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp TTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred cCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 222 3345555444 366655444332 122355566677766666554
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.77 E-value=0.00083 Score=57.42 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=13.3
Q ss_pred HhhCCCCHHHHHHHHHH
Q 014088 66 RLLSSPTDDVREQAVWA 82 (431)
Q Consensus 66 ~lL~~~~~~v~~~a~~~ 82 (431)
.++.++++.+|..++..
T Consensus 57 ~ll~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRY 73 (244)
T ss_dssp GGTTCSSHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHh
Confidence 45678899999988864
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.75 E-value=0.038 Score=46.16 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=103.3
Q ss_pred HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcC-CChHHHHHHHH
Q 014088 22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLS 99 (431)
Q Consensus 22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~ 99 (431)
.+.|..++..++|..|+..|+.. ... ...++.+.. +-.+++..|++.+..++..++. ..++
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------- 138 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------- 138 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------
Confidence 33466677779999999988877 311 125666766 5566899999999999999884 3332
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179 (431)
Q Consensus 100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 179 (431)
..++.+.... .+++..+|+.|...+.--+.. + ........++|.+-.+..+++.-|++.+.+.|..+++.+|+...
T Consensus 139 -~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 139 -KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp -TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 1455666666 888999999999877544433 1 12233356888888888899999999999999999999987766
Q ss_pred HHHH
Q 014088 180 AVIE 183 (431)
Q Consensus 180 ~~~~ 183 (431)
.+++
T Consensus 215 ~~~~ 218 (240)
T 3l9t_A 215 IELK 218 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.29 E-value=0.33 Score=44.95 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=91.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 192 (431)
Q Consensus 113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 192 (431)
..+...++.|+..+.....+.|. .....+..++.+.++.+..||..|+..|-.+|.+ +... .+...|.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHH
Confidence 34688899999999998877542 2356788899999999999999999999999987 3333 45678999
Q ss_pred hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088 193 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 193 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
+|+.+++.-...+-.+|..+...++. +.+..+...+..+ ++.+|..++..|..=
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTK 161 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence 99988877676676777666654442 2344555555556 788899888887643
No 117
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.01 E-value=0.42 Score=42.05 Aligned_cols=162 Identities=13% Similarity=0.060 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHcCCChHhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHH
Q 014088 31 GAVQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP 105 (431)
Q Consensus 31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 105 (431)
.+.+.-++..+.-.+. .+.....+.+.. ++..+...+.+ ..+..+..++++++|+..... .+..+.. ....
T Consensus 116 ~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~--~~~~ 191 (304)
T 3ebb_A 116 EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMS--QRES 191 (304)
T ss_dssp TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHH--THHH
T ss_pred HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHH--HHHH
Confidence 3445555555555554 455555554432 22233444443 456678999999999987655 4555554 2344
Q ss_pred HHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 106 LLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 106 l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
++..+. .+.+..++..++.++.|++... ..........++..+..+++ ..+.|....++.+|+++...++...+.
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 444432 3457889999999999998653 11222233445566666665 458899999999999999876554443
Q ss_pred HHHhCcHHHHHHhcCC
Q 014088 181 VIEAGVCPRLVELLRH 196 (431)
Q Consensus 181 ~~~~~~i~~L~~ll~~ 196 (431)
....++-..+-.+...
T Consensus 272 ak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 272 AKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHTTHHHHGGGGGGC
T ss_pred HHHcCHHHHHHHHHhC
Confidence 3333444444444443
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.96 E-value=0.12 Score=43.11 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=101.5
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcc-CChHHHHHHH
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 182 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 182 (431)
.+...|-+++..++|..|+.+|..+ . .....++.+.. +..+.+-.|+..+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 3444454666678999999988877 2 11457777777 5667789999999999998874 3332
Q ss_pred HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088 183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
..++.+.....+++..+|+.|.......+.... .. .-...+++.+-.+..++ +.-||+...|.|..++..+|+.
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-FK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-TT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-hh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 256778888999999999999888765443211 00 00112355555566666 8999999999999999998997
Q ss_pred HHHHHH
Q 014088 263 IQAIIE 268 (431)
Q Consensus 263 ~~~l~~ 268 (431)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766655
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.92 E-value=0.099 Score=44.30 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC----HH-HHH------H
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F 308 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~ 308 (431)
+......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++.... .+ ... .
T Consensus 67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 456677888888888654 555666665 5678888888888899999999998888876543 11 111 1
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088 309 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387 (431)
Q Consensus 309 l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 387 (431)
..+..-...+++.++ ..+.+.+..++..+..++...+..+. .-..+..+...|..+.+..+...+++++..+.
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 122345667888776 45667777777777777766544321 12256778889999999999888888886654
Q ss_pred H
Q 014088 388 V 388 (431)
Q Consensus 388 ~ 388 (431)
.
T Consensus 220 ~ 220 (233)
T 2f31_A 220 C 220 (233)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.79 E-value=0.94 Score=47.57 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=109.6
Q ss_pred hHHHHHHhcc---ccchhHHHHHHHHHHHhhc----CCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088 103 LMPLLAQFNE---HAKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 103 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
+..+..++.. ..++.++..+.-+++.|.. ..+.........+...+.+.+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 3344455532 2355666767666666654 332222233455666677777778888889999999999752
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-----C--CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHH
Q 014088 176 DKIQAVIEAGVCPRLVELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKE 247 (431)
Q Consensus 176 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~ 247 (431)
..++.+..++.. . ...++..|+++|.+++...+...+ +.+++++.+. .+.++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 234566666642 1 234677899999999865543333 5577777322 27899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCH
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 303 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 303 (431)
|+..|....-. .. .+..+...+.. ++..|..-....|.+++....+
T Consensus 534 A~~~Lm~t~P~-~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESKPS-VA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTCCC-HH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHCcC-HH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 98887644322 22 24456666665 4888888888899998887654
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.61 E-value=1.1 Score=39.44 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=110.6
Q ss_pred HHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC----ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088 188 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263 (431)
Q Consensus 188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 263 (431)
..+.+++ .-..+.+-.++..++-++... .....+.+.+ ++..+...+.....+..+.-++++++|+..+ +..+
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~ 182 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ 182 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence 4455554 445566777777777665532 2222222222 2223344444332456789999999999887 5555
Q ss_pred HHHHHh--CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC----CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHH
Q 014088 264 QAIIEA--GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG 336 (431)
Q Consensus 264 ~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~ 336 (431)
+.+... .+++.+...+...+..++..+...+.|++... ..+.... ++..+..+++ ..+.+....++-+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 555542 23444444444557889999999999987631 1122111 2333444443 4588999999999
Q ss_pred HHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088 337 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 392 (431)
Q Consensus 337 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~ 392 (431)
|++++..+.. .....+..|....+..+... ..+.|.+-+..+++
T Consensus 258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999965432 35555566666667766543 56778777776664
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.23 E-value=0.29 Score=43.15 Aligned_cols=173 Identities=15% Similarity=0.197 Sum_probs=120.5
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 247 (431)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 247 (431)
.++..++.+.+.-+++.+++..+...++.++.++.+..++.+...+....-.. .--...+|.++..+.-..++++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEEe
Confidence 45666777888889999999999999999999999999999988875432111 1112567888888865548999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-------CHh-------HHHHHHHHHHHhcC------CC------
Q 014088 248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFE-------IKKEAAWAISNATS------GG------ 301 (431)
Q Consensus 248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~-------v~~~a~~aL~~l~~------~~------ 301 (431)
....|+|...+........+..|.++.|...+... +.. +..++++++.|+.. ++
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999998888888888899999999887542 222 33444555555533 11
Q ss_pred --CHHHHHHHHHCCChHHHHhhcCCCC---H---HHHHHHHHHHHHHHH
Q 014088 302 --SNEQIKFLVSQGCIKPLCDLLNCPD---P---RIVTVCLEGLENILK 342 (431)
Q Consensus 302 --~~~~~~~l~~~~~l~~L~~ll~~~~---~---~v~~~al~~L~~l~~ 342 (431)
+..+...+++.++++.|..+++-+. + +++...+..+.-+++
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 1234445566678888988887432 2 445544544444433
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.04 E-value=0.7 Score=49.36 Aligned_cols=286 Identities=11% Similarity=0.079 Sum_probs=158.6
Q ss_pred CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCC-----ChHHHHHHHHcC
Q 014088 29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNG 101 (431)
Q Consensus 29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~ 101 (431)
.+++.|.+|-..|..+-... .....+...| .+.+..+|..|+.+|.+.... +++.+..+.+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-- 92 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-- 92 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--
Confidence 35677888887777764311 2344444433 346789999999999887632 3333333332
Q ss_pred ChHHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-
Q 014088 102 ALMPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG- 173 (431)
Q Consensus 102 ~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~- 173 (431)
.++..+.+. .+..++...+.++..++... +. ....+++.++.++++ ++..+..++.+|..++..
T Consensus 93 ---~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 93 ---SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp ---HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 344444222 45778888999999998774 31 235688888888876 555677788888777532
Q ss_pred ------ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CCcccHHHHHHHHhHhhcCChhhhHH
Q 014088 174 ------TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQC 222 (431)
Q Consensus 174 ------~~~~~~~---~~~~---~~i~~L~~ll~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~ 222 (431)
...+... .+.. .+++.+..++.. .+..++..++.++.++...-+. ..
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~ 242 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SH 242 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HH
Confidence 1111111 1111 122233333322 1234666777888776654331 22
Q ss_pred HhhcC--ChHHHHHHhcccchhhHHHHHHHHHHHhhcCC--HHHHHHHHHh---CCHHHHHHHHc--------cCCHhHH
Q 014088 223 IINHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIK 287 (431)
Q Consensus 223 ~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~ 287 (431)
+.+.. .++.+...+. ++++|..|+.+|..++... ++....++.. ..+..++..+. ..+.++.
T Consensus 243 i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 23322 6666666554 4678999999999999732 4433333321 11334555442 1145666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH----------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 288 KEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 288 ~~a~~aL~~l~~~~~~~~~~~l~~----------~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
+..+..+..+.. .....+.+ .++++.+..++..++..+...++..-..+++.
T Consensus 320 k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 320 KRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 677777766652 11111110 12366666666666666666666554445443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.96 E-value=0.23 Score=45.45 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=104.8
Q ss_pred cCChHHHHHHhcc----------cchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088 226 HQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAI 294 (431)
Q Consensus 226 ~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL 294 (431)
.+++..|+++|.. ..+......++.+|..+... ......++. ...+..+...+.+..+.++..|+..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566777776631 11346677888888888655 555666665 56789999999989999999999999
Q ss_pred HHhcCCCCHH-----HHH------HHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHH
Q 014088 295 SNATSGGSNE-----QIK------FLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQA 362 (431)
Q Consensus 295 ~~l~~~~~~~-----~~~------~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (431)
..++....++ ... ...+..-...+++.++. .+.+.+..++..+..++...+.... .-..+..
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~e 260 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSE 260 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHH
Confidence 8888755311 111 11233457788888876 5677777777777777766543321 1225677
Q ss_pred HHhhccHHHHHHhhcCCCHHHHHH
Q 014088 363 IDDAEGLEKIENLQSHDNTEIYEK 386 (431)
Q Consensus 363 l~~~~~~~~l~~l~~~~~~~v~~~ 386 (431)
+...|..+.+..+...+++++...
T Consensus 261 f~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 261 LMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHCChHHHHHHHhcCCChhHHHH
Confidence 888998888998877778777544
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.92 E-value=1.4 Score=37.19 Aligned_cols=84 Identities=11% Similarity=0.169 Sum_probs=61.5
Q ss_pred ChHhHHHHHhCCChHHHHHhhCC----C-------CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccch
Q 014088 48 TSENTRVVIDHGAVPIFVRLLSS----P-------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 116 (431)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~lL~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~ 116 (431)
...+-+.+ ..+++..|+.+|.. + +...+..++.||..+..........+...+.+..+...| .++++
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence 44555666 46778888887742 1 356678899999999876665555555566677777777 78889
Q ss_pred hHHHHHHHHHHHhhcCC
Q 014088 117 SMLRNATWTLSNFCRGK 133 (431)
Q Consensus 117 ~~~~~a~~~L~~l~~~~ 133 (431)
.++..++..|..+|..+
T Consensus 111 ~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 111 NMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 99999999999998774
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.87 E-value=1.1 Score=47.81 Aligned_cols=211 Identities=12% Similarity=0.024 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHH
Q 014088 71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 148 (431)
Q Consensus 71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L 148 (431)
.+...|..|-..|.++-..+ .+...+...|. .+.+..+|..|+..|.+..... ..........+-..+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 36677888877777763221 24444555553 5567889999999999987653 222222222333344
Q ss_pred HHhhcC-------CChHHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC---C-
Q 014088 149 ERLIHS-------NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---D- 216 (431)
Q Consensus 149 ~~lL~~-------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~- 216 (431)
+..+.. ....++..++.++..++... +..- .++++.++.++.. ++..+..++.+|..++.. .
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 444331 35788888898998887542 1111 1566777777755 345566778888777642 0
Q ss_pred ---hhhhH---HHhhc---CChHHHHHHhccc------------------chhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088 217 ---DMQTQ---CIINH---QALPCLLDLLTQN------------------YKKSIKKEACWTISNITAGNVNQIQAIIEA 269 (431)
Q Consensus 217 ---~~~~~---~~~~~---~~l~~L~~lL~~~------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 269 (431)
..... ..+.. .+++.+..++... .+..++..++.++.+...--+- ..+.+.
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~ 246 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE 246 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc
Confidence 10111 01111 2233333334321 1345666777777765542111 122232
Q ss_pred C--CHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088 270 G--IIGPLVNLLLNAEFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 270 ~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 301 (431)
. +++.++.++. +++++..|+.+|..++...
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 2 5666665544 5789999999999999755
No 127
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.70 E-value=1.6 Score=39.85 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=84.9
Q ss_pred ChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccch
Q 014088 48 TSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 116 (431)
Q Consensus 48 ~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~ 116 (431)
...+.+.+. .+++..|+.+|.. .+...+..++.||..+..........+.....+..+...+ .++++
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCch
Confidence 345556666 6778888888741 2457788899999999876665555555566778888887 78889
Q ss_pred hHHHHHHHHHHHhhcCCC-CC-ChhhH-----------hhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCCh
Q 014088 117 SMLRNATWTLSNFCRGKP-QP-LFEQT-----------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 117 ~~~~~a~~~L~~l~~~~~-~~-~~~~~-----------~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 175 (431)
.++..++.+|..+|.... .. ..... ..-+..++..+++ .+.+.+..++..+..+....+
T Consensus 177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999998753 22 11111 1124456667765 466777777666666665543
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.52 E-value=0.064 Score=42.46 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=58.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 392 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~ 392 (431)
++..|..-++.+++.++..|+..|-.+++++... |+..+....+++.+..+... .++.|++++..++.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3555666677889999999999999999988654 67777777788888887654 78999999999998
Q ss_pred HhcCC
Q 014088 393 TYWVE 397 (431)
Q Consensus 393 ~~~~~ 397 (431)
.|-..
T Consensus 122 ~W~~~ 126 (163)
T 1x5b_A 122 EWSEE 126 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 129
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.85 E-value=2.2 Score=38.82 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=120.0
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 014088 50 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 129 (431)
Q Consensus 50 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 129 (431)
......++...+..|+.++.++++.-|...-.+|..+-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.+
T Consensus 120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 33444555567888999999999999999999888887554444444332 11233444442222222233455666666
Q ss_pred hcCCCCCC-hhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088 130 CRGKPQPL-FEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207 (431)
Q Consensus 130 ~~~~~~~~-~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 207 (431)
..+...+. .....-+...|+.+.+...- ..-.....|+......++..... ++..+++.=-..++.-...-+.
T Consensus 199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ 273 (403)
T 3fga_B 199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLN 273 (403)
T ss_dssp HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHH
T ss_pred HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHH
Confidence 65542222 22223344555556554432 22234444444444444433331 1222222211122222222333
Q ss_pred HHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHH----
Q 014088 208 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLL---- 279 (431)
Q Consensus 208 ~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll---- 279 (431)
-+..+.... +.....+. ..+...+...+.++ +..|.+.|+.... ++. ...++. ..++|.+...+
T Consensus 274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----Ne~-i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----cHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444322 22222222 24667777788887 7888887765432 122 222222 12345544444
Q ss_pred ccC-CHhHHHHHHHHHHHhcCCC
Q 014088 280 LNA-EFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 280 ~~~-~~~v~~~a~~aL~~l~~~~ 301 (431)
... +..++..+..++.-+...+
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHccCHHHHHHHHHHHHHHHHhC
Confidence 333 7788888888888776543
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.40 E-value=1.8 Score=39.56 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH-HH----------H
Q 014088 241 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IK----------F 308 (431)
Q Consensus 241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~----------~ 308 (431)
+......++.+|..+... ......++. ...+..+...+..+.+.++..++..|..++....++. .. .
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456677888888887655 555555555 5678888888888899999999988888876543111 11 1
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088 309 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 386 (431)
Q Consensus 309 l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 386 (431)
..+..-...+++.++ ..+.+.+..++..+..++...+.... .-.++..+...|..+.+..+....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 123345667887776 45667777777777777766554322 1236777888998888888877777777544
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.23 E-value=2.5 Score=44.38 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=106.4
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhc----CCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 014088 61 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF 129 (431)
Q Consensus 61 i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l 129 (431)
+..+..++++ .++.++..++.+++.+. ...+.+ ....++.+.+.+. ...+.+-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 3444455554 35666777777776664 221111 0012344444432 344667778899999998
Q ss_pred hcCCCCCChhhHhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCcc
Q 014088 130 CRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPS 200 (431)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~ 200 (431)
... ..++.+.+++.. ....++..|+++|..+....+...+ +.+.++. ...+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 753 467777777742 2357889999999999977665444 5567777 446778
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 258 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 258 (431)
+|..|+..|... ++.. ..+..+...+..+.+..|+......|.+++..
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 888888777432 2322 23566777887765889999999999999884
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.56 E-value=0.38 Score=36.90 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=57.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 393 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 393 (431)
++..|..-++.+++.++..|+..|..++++++.. |+..+.+..+++.+..+....+++|++++..++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3555666677788999999999999999988654 66667677788888888777889999999999987
Q ss_pred hcC
Q 014088 394 YWV 396 (431)
Q Consensus 394 ~~~ 396 (431)
+-.
T Consensus 112 W~~ 114 (140)
T 3ldz_A 112 WTD 114 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.25 E-value=0.63 Score=36.02 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA 387 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a 387 (431)
++..|..-++++++.++..|+..|-.++++++.. |+..+....+++.+..+... .+++|++++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 107 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV 107 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence 3555666667889999999999999999998654 77778888889998888653 489999999
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
..++..|-.
T Consensus 108 l~li~~W~~ 116 (148)
T 1mhq_A 108 IEILFSWTV 116 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.23 E-value=1.2 Score=38.72 Aligned_cols=135 Identities=15% Similarity=0.094 Sum_probs=87.1
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH--hCCHHHHHH
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLVN 277 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ 277 (431)
....++..|.-++..-....+.+- +...+..|+ +.... .+.+++.|+++|+...+++|.....+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 455566666666654333333222 323333344 22333 6789999999999999999999988877 345666655
Q ss_pred HHcc-------CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088 278 LLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKA 343 (431)
Q Consensus 278 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~l~~~ 343 (431)
-|.. ....+.+.-+.+|.-|+.... .. ....+..|.+++... +++++..++..+..++..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~ 190 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA 190 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence 4433 234566777888888877641 11 134567777777655 889999999999998863
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.13 E-value=0.71 Score=36.71 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=58.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 387 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a 387 (431)
++..|..-++++++.++..|+..|-.++++++.. |+..+.+..+++.|..+.. ..+.+|++++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 119 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 3556666777889999999999999999998754 6777778888888888865 2468999999
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
..++..|-.
T Consensus 120 l~li~~W~~ 128 (171)
T 1juq_A 120 IELLYSWTM 128 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.00 E-value=0.49 Score=36.02 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=54.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhh-ccHHHHHHhhcCC--------CHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHD--------NTEIY 384 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~--------~~~v~ 384 (431)
+++.|..-|+.+++.+..++|.+|..++..+... |...+.+. ..|+.+.+....+ +..||
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR 118 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence 5777778888888889999999999998766432 44444433 3344444443222 38899
Q ss_pred HHHHHHHHHhcCCCCCC
Q 014088 385 EKAVKILETYWVEEDED 401 (431)
Q Consensus 385 ~~a~~~l~~~~~~e~~~ 401 (431)
.+|..+++-+|+++...
T Consensus 119 ~~AkEl~~ll~d~~~~~ 135 (140)
T 1vdy_A 119 ETAHETISAIFSEENGS 135 (140)
T ss_dssp HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHhCcCCCC
Confidence 99999999999987654
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.78 E-value=0.8 Score=35.41 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=58.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088 314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 387 (431)
Q Consensus 314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a 387 (431)
.+..|..-++++++.++..|+..|..++++++.. |+..+....+++.|..+.. ..+++|++++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 117 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI 117 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence 3555656667889999999999999999998764 6777888888888888864 3689999999
Q ss_pred HHHHHHhcC
Q 014088 388 VKILETYWV 396 (431)
Q Consensus 388 ~~~l~~~~~ 396 (431)
..++..|-.
T Consensus 118 l~li~~W~~ 126 (149)
T 3g2s_A 118 LELLYSWTV 126 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.29 E-value=4.5 Score=37.45 Aligned_cols=237 Identities=13% Similarity=0.048 Sum_probs=123.4
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 014088 51 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 130 (431)
Q Consensus 51 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 130 (431)
.....++...+..|+.++.++++.-|...-.+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 3455566678899999999999999999888888776433333433332 122334444433333333456677777777
Q ss_pred cCCCCC-ChhhHhhhHHHHHHhhcCCChH-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088 131 RGKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 208 (431)
Q Consensus 131 ~~~~~~-~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 208 (431)
.+.... ......-+...|+.+.+...-. .-.....|+......++..... ++..|++.=-..++.=...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence 765322 2223333455566666654322 2233444554444444433221 12222222211222222223444
Q ss_pred HhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHHcc---
Q 014088 209 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN--- 281 (431)
Q Consensus 209 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--- 281 (431)
+..+.... +...+.+. ..+...+.+.+.++ +..|.+.|+.... ++... .++. ..++|.+..-+..
T Consensus 308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~i~-~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEYIM-SLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHHHH-HHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHHHH-HHHHhchhhhHHhhHHHHHHHHH
Confidence 44444322 22222222 24667777888887 8888888765432 22222 2222 1245666665532
Q ss_pred -C-CHhHHHHHHHHHHHhcCCC
Q 014088 282 -A-EFEIKKEAAWAISNATSGG 301 (431)
Q Consensus 282 -~-~~~v~~~a~~aL~~l~~~~ 301 (431)
. +..++..+..++.-+...+
T Consensus 380 ~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHHHHC
Confidence 2 5678888888887666543
No 139
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.27 E-value=4.3 Score=35.22 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=95.6
Q ss_pred hhHHHHHHhhcCC------ChHHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 143 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 143 ~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
.-+..+..+++++ +.+-...++..|..++.+-.--.+.+- +...+..|+ +.....+.+++.+.++|+...+.
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3444555566654 455677888888888866543333222 223444444 33445667899999999999999
Q ss_pred ChhhhHHHhh--cCChHHHHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHh
Q 014088 216 DDMQTQCIIN--HQALPCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE 285 (431)
Q Consensus 216 ~~~~~~~~~~--~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~ 285 (431)
++.....+.+ ..++..+..-|... ....+++.-+.+|.-|...+.+. ....+..|.+++... +..
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 9987776653 23444444444320 13466777777888887764221 134567777777766 899
Q ss_pred HHHHHHHHHHHhc
Q 014088 286 IKKEAAWAISNAT 298 (431)
Q Consensus 286 v~~~a~~aL~~l~ 298 (431)
++..++..+..+.
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999998888776
No 140
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.97 E-value=11 Score=34.29 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-hh-hHHHh---------
Q 014088 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ-TQCII--------- 224 (431)
Q Consensus 156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~--------- 224 (431)
+......++.||..+..+.......+...+.+..+...+.++++.++..++..|..+|...+ .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 35678889999998887665554444455788999999998999999999999988887553 11 12221
Q ss_pred -hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH--HH----HHHHHHhCCHHHHHHHHcc-CCHhHHHH
Q 014088 225 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV--NQ----IQAIIEAGIIGPLVNLLLN-AEFEIKKE 289 (431)
Q Consensus 225 -~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~----~~~l~~~~~i~~L~~ll~~-~~~~v~~~ 289 (431)
+..-+..+++.+......+.+..++..+..+....+ +. +..+...|+.+. +.-+.. .++.+...
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELREIENEDMKVQ 222 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTCCCHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHhccCChhHHHH
Confidence 334566788888755366777666666666665322 22 234445555554 444444 45555443
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.86 E-value=2.3 Score=35.54 Aligned_cols=71 Identities=13% Similarity=0.305 Sum_probs=56.0
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088 315 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET 393 (431)
Q Consensus 315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~ 393 (431)
+..|..-++++++.++..|+..|..++++++.. |...+....+++.|..+. ...+++|++++..++..
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~-----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQT-----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH-----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 555666677889999999999999999988764 566676777777777764 45789999999999987
Q ss_pred hcC
Q 014088 394 YWV 396 (431)
Q Consensus 394 ~~~ 396 (431)
+-.
T Consensus 116 W~~ 118 (226)
T 3zyq_A 116 WAH 118 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.70 E-value=2.5 Score=35.16 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=54.7
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088 315 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET 393 (431)
Q Consensus 315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~ 393 (431)
+..|..-++++++.++..|+..|..++++++.. |+..+.+..+++.+..+. +..+.+|++++..+++.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~-----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH-----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445555667789999999999999999998653 566666667777777774 45689999999988877
Q ss_pred hcC
Q 014088 394 YWV 396 (431)
Q Consensus 394 ~~~ 396 (431)
+-.
T Consensus 113 W~~ 115 (220)
T 1dvp_A 113 WAY 115 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 143
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.85 E-value=15 Score=31.15 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 014088 117 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 196 (431)
Q Consensus 117 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 196 (431)
+.+-..+.-...++-+. .......+++.++.+..+.+.++|+.....+...+...+.... ..++.|..++.+
T Consensus 30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 34555555555555442 1235567888888887788899999999999888855543322 456778888888
Q ss_pred CCcccHHHHHHHHhHh
Q 014088 197 PSPSVLIPALRTVGNI 212 (431)
Q Consensus 197 ~~~~v~~~a~~~l~~l 212 (431)
+++.+...++.+..++
T Consensus 102 ~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSI 117 (257)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888877665
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.63 E-value=7.8 Score=35.13 Aligned_cols=87 Identities=13% Similarity=-0.012 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 014088 118 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 197 (431)
Q Consensus 118 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 197 (431)
.+-..+.-+..+..+. .......+++.++.+-.+.+.++|++++..+...+....+... .+++.|..++.++
T Consensus 41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCC
Confidence 3444444455544432 1135578999999999999999999999999888765443322 4567788888888
Q ss_pred CcccHHHHHHHHhHh
Q 014088 198 SPSVLIPALRTVGNI 212 (431)
Q Consensus 198 ~~~v~~~a~~~l~~l 212 (431)
++.+...++.+.+++
T Consensus 113 d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 113 NVNVVKKAILTMTQL 127 (386)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888888775
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=85.28 E-value=3.5 Score=32.12 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=53.9
Q ss_pred hHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHHH
Q 014088 315 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAVK 389 (431)
Q Consensus 315 l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~~ 389 (431)
+..|..-++ .+++.++..|+..|..++++++.. |+..+.+..+++. +..+.. .+...|++++..
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~-----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR-----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH-----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 445555665 578899999999999999998653 6777777778887 666652 345799999999
Q ss_pred HHHHhcC
Q 014088 390 ILETYWV 396 (431)
Q Consensus 390 ~l~~~~~ 396 (431)
++..|-.
T Consensus 124 li~~W~~ 130 (157)
T 1elk_A 124 LIQSWAD 130 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987655
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.90 E-value=1.7 Score=33.23 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=57.8
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~ 343 (431)
++..+.+-+.++++.++..|+..|-.+..++++.....+.+..+++.|..+++..++.++..++..+......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3556777788889999999999999998888876666666666777777777767889999999988877653
No 147
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.80 E-value=11 Score=34.07 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088 244 IKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 322 (431)
Q Consensus 244 v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 322 (431)
.+...+.-+..+.. .++. +. ..+++.++++-.+.+.++|+.++.+|...+.... +... .+++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~-el~~-----~~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI-ELLL-----KLIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHH
Confidence 45555555555433 2232 11 3578889998888899999999999988875332 2222 2577888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCC----cchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 323 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGG----VNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 323 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
+.+++.+.+.++.+..++....-..-- ..+. .+.....+.. ....|..+..+.|.-++-.+.+.+++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~--~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMV--KSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHh--cCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 888999998888887777543211100 0000 0123333332 2556777788899999999999998854
No 148
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.48 E-value=5.5 Score=41.35 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=119.4
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHH-----HhccC
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALS-----YLSDG 173 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~-----~l~~~ 173 (431)
+..|+++- .+.-.+++..|-.+|......-+... .-++|.+++.|+ ..+.+-.+.|+.+|. .....
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 34555544 56678999999999999887644333 345555555554 456777788888765 12222
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh--hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088 174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251 (431)
Q Consensus 174 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 251 (431)
+..... .+++.+++....++++++..+-.+...+...-. ... ..++...+ .-+..+ +..+ ..+...
T Consensus 210 d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~-~~~~~~~~----~~i~~~-d~~i-~~~~~~ 277 (997)
T 1vsy_5 210 DYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSV-CVISDQAF----LPLAPP-DGTI-NLQVEA 277 (997)
T ss_dssp CHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSC-CCCCGGGT----GGGCCS-CSST-TSHHHH
T ss_pred ChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHH-HHHHHHHH----hccCCC-cHHH-HHHHHH
Confidence 222222 456777777777888888777666555543211 110 01111111 112212 2111 111111
Q ss_pred HHHhhcCCHHHHHHHHH--hCCHHHHHHHHcc-CC--HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088 252 ISNITAGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326 (431)
Q Consensus 252 L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 326 (431)
..... ...+....+ .++...++++.++ .+ ++....++..+.++....... ....++..+.+.+.+++
T Consensus 278 ~~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 278 VKLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCC
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCC
Confidence 11111 111222211 2345556677633 36 888889888877776433100 01123566777888899
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 014088 327 PRIVTVCLEGLENILKAG 344 (431)
Q Consensus 327 ~~v~~~al~~L~~l~~~~ 344 (431)
+.++..++.++..++..-
T Consensus 350 p~~R~~a~~~l~~il~~~ 367 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNKI 367 (997)
T ss_dssp HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887763
No 149
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.35 E-value=25 Score=30.85 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=103.6
Q ss_pred cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc--------cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCH
Q 014088 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272 (431)
Q Consensus 201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 272 (431)
+++..++.+..+....+.. + .+....+|.+++..-. ..++++..-....+..+...-.+....+.+. ++
T Consensus 45 vKkeiLkLiet~i~~~~d~-~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-VF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHcCCCH-H-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH
Confidence 5666666776666544322 2 2333567777653311 1145555555555555554333444444443 66
Q ss_pred HHHHHHHccC---CHhHHHHHHHHHHHhcCCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088 273 GPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342 (431)
Q Consensus 273 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~ 342 (431)
..-+++++.. .|+.|.+=...|..+..++ ++++.+. +++.++-..++.++++...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 6677778753 6788877777776665543 2333333 46677777889999999999999999988
Q ss_pred hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 014088 343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 396 (431)
...+..+ +...+-+.-.++.+.++ ..+....-.+.-..+|..+|.
T Consensus 197 n~~~~~~---------~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 197 NVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHCHH---------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 7754221 34444444444444443 344443344455566666664
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.68 E-value=3.6 Score=31.70 Aligned_cols=72 Identities=8% Similarity=-0.079 Sum_probs=58.8
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK 342 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~ 342 (431)
++..+..-+.++++.++..|+..|-.+..++++.....+.+..+++.|..+++. .++.++..++..+.....
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 355677778889999999999999999999887777777778889999988863 367899988888777654
No 151
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.21 E-value=2.8 Score=32.96 Aligned_cols=72 Identities=4% Similarity=-0.008 Sum_probs=56.7
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILK 342 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~ 342 (431)
++..|.+-+.++++.++..|+..|-.+..++.+.....+.+..+++.|..+++. .++.++..++..+.....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 355677778888999999999999999998887777666667778888887764 577888888887776554
No 152
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.91 E-value=3.6 Score=31.73 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=60.0
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 343 (431)
++..|..-+.+.++.++..|+..|-.+..++++.....+.+..+++.|+.+++. .++.++..++..+......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 355677778888999999999999999999987777777777888889888863 4678999999988887654
No 153
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=77.85 E-value=31 Score=29.22 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088 243 SIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321 (431)
Q Consensus 243 ~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 321 (431)
+.+...+.-+..++.. ++.... .+++.++.+..+.+.++|+..+.++...+.... +... .+++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-ELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHH
Confidence 5666666666676553 333222 356667776667789999999999988874331 2222 257788888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc----chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088 322 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV----NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 395 (431)
Q Consensus 322 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 395 (431)
++.+++.+.+.++.+..++.+..-..-- ..+.. ......+.+ ....|..+..+.|..++-.+.+.+++.-
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~--~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLC--SLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8888999999988887777654322111 11111 123333332 3556777788899999999999998854
No 154
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=77.72 E-value=17 Score=32.93 Aligned_cols=192 Identities=13% Similarity=0.054 Sum_probs=95.9
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088 52 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131 (431)
Q Consensus 52 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 131 (431)
....++...+..|+.++.++++.-|...-.+|..+-..-...|..+.+ .+-..+.+.+.......-....+.+++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 344555677889999999999999999888887775433334443322 1233455555433333334566677777776
Q ss_pred CCCCC-ChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHH
Q 014088 132 GKPQP-LFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209 (431)
Q Consensus 132 ~~~~~-~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l 209 (431)
+.... +.....-+...|+.+.+...- ..-.....++......++..... ++..+++.=-..+..=...-+.-+
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 65322 222223344555556554432 12223344444444444333221 222232222112222222233333
Q ss_pred hHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088 210 GNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251 (431)
Q Consensus 210 ~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 251 (431)
..+.... +...+.+. ..+...+.+.+.++ +..|.+.|+..
T Consensus 321 eeiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~ 361 (392)
T 2jak_A 321 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYY 361 (392)
T ss_dssp HHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 3333322 22222222 24566677777776 77777776543
No 155
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=76.24 E-value=4.2 Score=32.23 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=57.9
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 343 (431)
++..|.+-+.++++.++..|+..|-.+..++++.....+.+..+++.|+.++.. .+..++..++..+......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355677778889999999999999999998876666677777788888888862 3578999988888876543
No 156
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=76.07 E-value=49 Score=30.60 Aligned_cols=184 Identities=10% Similarity=0.052 Sum_probs=97.3
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh---
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD--- 217 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~--- 217 (431)
..++-.|+.++++.|+.-|.....+|..+-..-..... ++...+-..+.+++.. ....-....+.+++.+..+..
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL 239 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHH-HHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 56888999999999999999888888776543322222 2222223344444433 344556678888888876532
Q ss_pred --hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 218 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 218 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
+....+ ...|+.+.+...-......-.+++..+...++.....+ +..|++.=-..+..=...-+.-|.
T Consensus 240 Keehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 240 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp CHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 222211 23344444433222333344455555544334332222 112222111122222223344455
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L 337 (431)
.++....+.....+. ..+...+..++++.+-+|.+.|+...
T Consensus 310 eile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 310 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp HHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566555555544422 23566777888889999988887654
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=69.89 E-value=25 Score=27.01 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=50.5
Q ss_pred hHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHHH
Q 014088 315 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAVK 389 (431)
Q Consensus 315 l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~~ 389 (431)
+..|..-+. .+++.++..|+..|..++++++.. |...+.+..+++. |..+.. +...+|++++..
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~-----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~ 123 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS-----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILN 123 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 444445554 357778888999999999988764 5666666666654 566543 245689999999
Q ss_pred HHHHhcC
Q 014088 390 ILETYWV 396 (431)
Q Consensus 390 ~l~~~~~ 396 (431)
++..|-.
T Consensus 124 li~~Wa~ 130 (152)
T 3rru_A 124 FIKTWSQ 130 (152)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998765
No 158
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=68.74 E-value=13 Score=38.67 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=103.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc---ccchhHHHHHHHHHH--HhhcCCCC
Q 014088 61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLS--NFCRGKPQ 135 (431)
Q Consensus 61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~~ 135 (431)
+.-|+++--+...+||..|-.+|......-+..+.. +++.+++.|.. +.+.+-.+-|+.+|. .+... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 455555556677888888888888887655554444 35677777754 445555555666544 11111 11
Q ss_pred CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC-------------------h----------------HHHHH
Q 014088 136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT-------------------N----------------DKIQA 180 (431)
Q Consensus 136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-------------------~----------------~~~~~ 180 (431)
........+++.+++....++++++..+-.+...+.... + .+...
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 233444667777777766666666555444433332200 0 00000
Q ss_pred HHH--hCcHHHHHHhc-CCCC--cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088 181 VIE--AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255 (431)
Q Consensus 181 ~~~--~~~i~~L~~ll-~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 255 (431)
..+ .++...++... +... +.....++..+.++....+ ......++..+++.+.++ .+.+|..|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 100 12333334544 2344 6667777777656553322 111224567788888888 899999999888655
Q ss_pred h
Q 014088 256 T 256 (431)
Q Consensus 256 ~ 256 (431)
.
T Consensus 364 l 364 (997)
T 1vsy_5 364 C 364 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 159
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=68.72 E-value=69 Score=29.12 Aligned_cols=229 Identities=10% Similarity=0.060 Sum_probs=120.5
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh---
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD--- 217 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~--- 217 (431)
..++-.|+.++++.|+.-|...-.+|..+-..-..... ++...+-..+.+++.. ....-....+.+++.+..+..
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 45788899999999999999988888876544333322 2222233344444433 233345567777777765431
Q ss_pred --hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 218 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 218 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
+....+ ...|+.+-+...-......-..++..+...++.....++ ..+++.=-..++.=...-+.-+.
T Consensus 207 keehk~fl-----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 207 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CHHHHHHH-----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHHHH-----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHHH
Confidence 222111 123333333332223334444555555544344332221 12222111223222223344455
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH-----HHHHHhhhhhhhcCCCCCcchHHHHHHhhccHH
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL-----ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 370 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L-----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (431)
.++....+.....+. ..+...+..++.+++-+|.+.|+... .+++.... ...+. -.++
T Consensus 277 ~iLe~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~--------------~~IlP--ii~p 339 (403)
T 3fga_B 277 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA--------------AKILP--IMFP 339 (403)
T ss_dssp HHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH--------------HHHHH--HHHH
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH--------------HHHHH--HHHH
Confidence 566655555544422 23567777888899999999887654 22222111 11111 1234
Q ss_pred HHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 014088 371 KIENL-QSHDNTEIYEKAVKILETYWVEE 398 (431)
Q Consensus 371 ~l~~l-~~~~~~~v~~~a~~~l~~~~~~e 398 (431)
.|.+. .+|=|+.++..+..++..+.+-+
T Consensus 340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 340 SLYRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 45544 56679999999999998876543
No 160
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=68.55 E-value=11 Score=28.30 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=61.1
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 350 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 350 (431)
++|.|+..|++.+..+...++..|..+- .. +++.+.+.+++.|..-.. ++|..++..-...
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 4778999999999999888888887652 12 355566667777765444 4444444332211
Q ss_pred CCCCCcchHHHHHHhhccHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC
Q 014088 351 GNTGGVNLFAQAIDDAEGLEKIENLQSHD-----NTEIYEKAVKILETYWVE 397 (431)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~ 397 (431)
....+ .+.|.++.+.+ ..++.+.|.++|++||.+
T Consensus 93 --------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 --------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp --------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred --------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12222 34466775553 689999999999999863
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=67.42 E-value=10 Score=34.73 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=66.4
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc-------cccchhHHHHHHHHHHHhhcCC--CCCC
Q 014088 67 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGK--PQPL 137 (431)
Q Consensus 67 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 137 (431)
.+.+..+..+..++++++|+.......+..+........+++.+. ...+..++..++.++.|++... ....
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~ 349 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 349 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 344567889999999999998766522333322112345555542 1235678888888999998643 1111
Q ss_pred hhhHhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhccCCh
Q 014088 138 FEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
..+.+.+..++. ..++|....++-+|++|....+
T Consensus 350 ----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 233444555554 3588999999999999986544
No 162
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=64.89 E-value=31 Score=31.28 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=92.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh---
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD--- 217 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~--- 217 (431)
..++-.|+.++++.|+.-|.....+|..+-..-..... ++...+-..+.+++.. ....-....+.+++.+..+..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 56888899999999999998888888766533322222 2222333445555544 334556678888888776542
Q ss_pred --hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088 218 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295 (431)
Q Consensus 218 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 295 (431)
+... ++ ...|+.+.+...-......-.+++..+...++.....++ ..+++.=-..+..=...-+.-|.
T Consensus 252 Keehk~-Fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-FL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-HH----HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-HH----HHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHH-----HHHHHhCCCCCchHHHHHHHHHH
Confidence 2221 11 233444444332222233444444444443333222221 11222111111111112233344
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 014088 296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 336 (431)
Q Consensus 296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~ 336 (431)
.++...+++....+ ...+...+..++++++-++.+.|+..
T Consensus 322 eiLe~~~~~~f~~i-~~~lF~~la~ci~S~hfqVAErAL~~ 361 (392)
T 2jak_A 322 EILDVIEPSEFVKI-MEPLFRQLAKCVSSPHFQVAERALYY 361 (392)
T ss_dssp HHHHTCCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444444444432 12356667778888888888887654
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.75 E-value=7.9 Score=32.25 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=57.2
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~ 343 (431)
++..|..-+.++++.++..|+..|-.+..+.++.....+.+..+++.|..+++ ..++.++..++..+......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 35567777888899999999999999998888766666666677777777775 35778999998888877654
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=64.69 E-value=8.4 Score=34.54 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=65.2
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc-------cccchhHHHHHHHHHHHhhcCC--CCCC
Q 014088 67 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGK--PQPL 137 (431)
Q Consensus 67 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 137 (431)
.+.+..+..+..++++++|+.......+..+........+++.+. ...+..++..++.++.|++... ....
T Consensus 207 ~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~ 286 (362)
T 3l3f_X 207 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 286 (362)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred hcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 344567889999999999998766522333321111233444431 1235678888888899988643 1111
Q ss_pred hhhHhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhccCCh
Q 014088 138 FEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGTN 175 (431)
Q Consensus 138 ~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~ 175 (431)
..+.+.+..++. ..++|....++-+|+++....+
T Consensus 287 ----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 287 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 233445555554 3588999999999999986443
No 165
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=63.94 E-value=39 Score=25.68 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=56.5
Q ss_pred HHHHHHHCCChHHHHhhcC------CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC
Q 014088 305 QIKFLVSQGCIKPLCDLLN------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 378 (431)
Q Consensus 305 ~~~~l~~~~~l~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 378 (431)
....+++.|++..+..-+. -++..++...+.+|.++= . -...+.++|.-+.+..+..|
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I---------------~~e~Lk~SglGkvv~~l~k~ 116 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-I---------------HKEHLVTSGVGKIVYFYSIN 116 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-C---------------CHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-C---------------CHHHhhcCCCCcchhhhhcC
Confidence 4566778888888877775 246789998888888761 1 15668888888888888655
Q ss_pred --CCHHHHHHHHHHHHHhc
Q 014088 379 --DNTEIYEKAVKILETYW 395 (431)
Q Consensus 379 --~~~~v~~~a~~~l~~~~ 395 (431)
+.++.++.|..++++|.
T Consensus 117 ~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 117 PKESKEVRASAKALVQKWT 135 (145)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 46899999999999864
No 166
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=63.62 E-value=20 Score=30.35 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=63.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-------ccchhHHHHHHHHHHHhhcCC-C-CCCh
Q 014088 68 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-P-QPLF 138 (431)
Q Consensus 68 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~-~~~~ 138 (431)
+.+.++..+.-++++++|+..+....+..+........+++.+.. +.+..++..++.++.|++... . ....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 345678899999999999988766234444332223334444311 235678888888999988643 1 1111
Q ss_pred hhHhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhccCC
Q 014088 139 EQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 174 (431)
Q Consensus 139 ~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~ 174 (431)
.....+.+++. ..+++....++-+++++...+
T Consensus 179 ----e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp ----THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 22333444333 237889999999999988543
No 167
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.97 E-value=12 Score=30.93 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=55.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088 59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 132 (431)
.++..|.+-|++.++.++..|+..|-.+.... +.++..+....++..+..++....+.+++..++..+..-+..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999988654 345566666667788888876566788888888777666543
No 168
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=60.70 E-value=27 Score=26.37 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=48.6
Q ss_pred CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCCCC--------HHHHHHHHHHHHHHH
Q 014088 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD--------PRIVTVCLEGLENIL 341 (431)
Q Consensus 271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~--------~~v~~~al~~L~~l~ 341 (431)
+++.|.+-|+..++.++..|+.+|..++.++++.....+.+. ..|..+.++--.++ ..|+..|-+++.-|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 466788888999999999999999999999987777776553 22333333322222 246666666655544
Q ss_pred H
Q 014088 342 K 342 (431)
Q Consensus 342 ~ 342 (431)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=58.46 E-value=69 Score=29.35 Aligned_cols=137 Identities=10% Similarity=-0.010 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--
Q 014088 119 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-- 196 (431)
Q Consensus 119 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-- 196 (431)
+..++-++..+..+.+... .+...+-..+.+..+..+.-+++++.|+..+..-....+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~-----~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l 317 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS-----DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEF 317 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHcCCchHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHh
Confidence 4456667776666643221 111222233445578889999999999998875233323222234455555432
Q ss_pred ------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc-----c---cchhhHHHHHHHHHHHhhcCCHHH
Q 014088 197 ------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-----Q---NYKKSIKKEACWTISNITAGNVNQ 262 (431)
Q Consensus 197 ------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~---~~~~~v~~~a~~~L~nl~~~~~~~ 262 (431)
.+..++..+...+-|++....... .+...+..+.+.+. . ..+.+....++-++|+|....+..
T Consensus 318 ~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 318 SQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 134577777888888876322100 01234455666665 1 126788899999999998754443
Q ss_pred H
Q 014088 263 I 263 (431)
Q Consensus 263 ~ 263 (431)
.
T Consensus 395 ~ 395 (425)
T 3pst_A 395 R 395 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.56 E-value=21 Score=27.67 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=55.4
Q ss_pred CHHHHHHHHc-cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~al~~L~~l~~~ 343 (431)
++..|.+-++ ++++.++..|+..|-.+..++++.....+.+..+++. |+.++.. ++..++..++..+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3455777776 4788999999999999999888777777777778887 7777742 3458888888888876653
No 171
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=49.94 E-value=21 Score=25.33 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCC
Q 014088 360 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVE 397 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 397 (431)
...|.+.+.-..+..|..| ++++|+..|..++..|-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6788889888999999776 9999999999999987653
No 172
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=49.90 E-value=1e+02 Score=25.12 Aligned_cols=134 Identities=7% Similarity=-0.079 Sum_probs=77.7
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 190 (431)
Q Consensus 112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 190 (431)
.++.-+.+..|+.++........ ...++.+-.++. .++-.+....+.+++.+....+.. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 44556666677777766542210 122333333343 345566665555566554433322 23556
Q ss_pred HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088 191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 268 (431)
Q Consensus 191 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 268 (431)
.....+++.-+++.++-....... ...... .++.+-..+.++ +.-|++...|+|..++..+++.....+.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 778888887777777654432222 112221 234444466677 8999999999999999988886655554
No 173
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.11 E-value=13 Score=31.61 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh----CC----CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088 28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL----SS----PTDDVREQAVWALGNVAGDSPKCRDLVLS 99 (431)
Q Consensus 28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 99 (431)
+.++..+..++++++|+..+....+..+.+......+++.+ .+ ++..++..++..+.|++......+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 45678999999999999984432455554433334444433 22 3567888889999998742100000 1
Q ss_pred cCChHHHHHHhcc--------ccchhHHHHHHHHHHHhhcC
Q 014088 100 NGALMPLLAQFNE--------HAKLSMLRNATWTLSNFCRG 132 (431)
Q Consensus 100 ~~~i~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~ 132 (431)
......++..+.. ..+++....++-+++++...
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1233445555532 24778888899999999864
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.62 E-value=58 Score=29.16 Aligned_cols=134 Identities=10% Similarity=0.008 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHhhhHHHHH-HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--
Q 014088 119 LRNATWTLSNFCRGKPQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-- 195 (431)
Q Consensus 119 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-- 195 (431)
+..++-++..+..+.+.. +.+..++ ..+.+..+..+.-+++++.|+..+..-..+.+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 445666777766665322 1222222 3334557888999999999999887523332322112233344332
Q ss_pred --C----CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc-----c---cchhhHHHHHHHHHHHhhcCCHH
Q 014088 196 --H----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-----Q---NYKKSIKKEACWTISNITAGNVN 261 (431)
Q Consensus 196 --~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~---~~~~~v~~~a~~~L~nl~~~~~~ 261 (431)
. .+..++..+...+-|++....... .+......+.+.+. . ..+++....++-++|+|....+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1 234577778888888876322110 01234455666665 2 12778889999999999864444
No 175
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=42.21 E-value=1.2e+02 Score=23.66 Aligned_cols=77 Identities=8% Similarity=0.073 Sum_probs=56.9
Q ss_pred HHHHHHHHCCChHHHHhhcC------CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088 304 EQIKFLVSQGCIKPLCDLLN------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 377 (431)
Q Consensus 304 ~~~~~l~~~~~l~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 377 (431)
.....|++.|++..+..-|. -++..++...+.+|.++= - -...|.++|.-..+.-+..
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP---I-------------~~e~Lk~SglGkvV~~l~k 130 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP---V-------------KTEHLKESGLGRVVIFYTK 130 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---C-------------CHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC---C-------------CHHHHhhCCCCceeeehhc
Confidence 44556778888888877765 245689998888888651 1 1566888888888877765
Q ss_pred C--CCHHHHHHHHHHHHHhcC
Q 014088 378 H--DNTEIYEKAVKILETYWV 396 (431)
Q Consensus 378 ~--~~~~v~~~a~~~l~~~~~ 396 (431)
| +.+++++.|..++++|..
T Consensus 131 ~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 131 SKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp CTTSCHHHHHHHHHHHHHHTC
T ss_pred CCcccHHHHHHHHHHHHHHHH
Confidence 5 468899999999998854
No 176
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=36.16 E-value=1e+02 Score=23.30 Aligned_cols=89 Identities=7% Similarity=-0.009 Sum_probs=56.4
Q ss_pred HHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088 206 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 285 (431)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 285 (431)
+..|..++..+..... .++..+.+.+... .+.-+..+++.+-.++.............++.+.+.......+..
T Consensus 27 I~~LT~~a~~~~~~a~-----~Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~ 100 (144)
T 1sz9_A 27 ITTLTKLAEENISCAQ-----YFVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNT 100 (144)
T ss_dssp HHHHHHHHHHTGGGHH-----HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3344444443333333 3455666666666 788888999999888873222234555666777777777766788
Q ss_pred HHHHHHHHHHHhcCC
Q 014088 286 IKKEAAWAISNATSG 300 (431)
Q Consensus 286 v~~~a~~aL~~l~~~ 300 (431)
+|......+...-..
T Consensus 101 ~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 101 TRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhCc
Confidence 888877777766543
No 177
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=35.09 E-value=1.9e+02 Score=23.79 Aligned_cols=137 Identities=11% Similarity=0.023 Sum_probs=78.2
Q ss_pred hhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhcCCChHHHHHHHHc
Q 014088 24 CFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDLVLSN 100 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~i~~~ 100 (431)
-|..++..+.|..|+..+..... ..+ ..++.+-.++.. .+..+.... ..+++.+....+.
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~~~~---------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------- 130 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKHINE---------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------- 130 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGGCCG---------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG--------
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH--------
Confidence 34445555677777666654321 111 123333344433 566665543 2344444432222
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180 (431)
Q Consensus 101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 180 (431)
...+.+.... .+++.-+++.|+-.+ +... ........++.+...+.+++.-|+..+.|+|..++...++....
T Consensus 131 ~~~~~l~~W~-~s~~~w~rR~ai~~~--l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 131 LISAYIPKWI-ASDNIWLQRAAILFQ--LKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGGTHHHHH-HSSCHHHHHHHHHTT--TTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHh-cCCchHHHHHHHHHH--HHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 1233445555 677788888876554 2211 11122356666777888899999999999999999988877665
Q ss_pred HHHh
Q 014088 181 VIEA 184 (431)
Q Consensus 181 ~~~~ 184 (431)
+++.
T Consensus 204 fl~~ 207 (232)
T 3jxy_A 204 YVQN 207 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 178
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=34.16 E-value=1.8e+02 Score=23.32 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088 115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191 (431)
Q Consensus 115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 191 (431)
|.......+.+...|..++.-........++|.++.++-.. ...+|..|+..+..++........ -.+..++..+.
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tl~ 137 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYK-TLAPRVLKTLK 137 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTST-THHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCc-hHHHHHHHHHH
Confidence 67777888888999998876555566788999888887432 237999999999999854322111 12335566666
Q ss_pred HhcCCCCc--ccHHHHHHHHhHh
Q 014088 192 ELLRHPSP--SVLIPALRTVGNI 212 (431)
Q Consensus 192 ~ll~~~~~--~v~~~a~~~l~~l 212 (431)
+.+.+++. ....-|+..|..+
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHHh
Confidence 66665442 2333344444444
No 179
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=32.67 E-value=1.1e+02 Score=24.61 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=67.5
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHHhcCCChHH-HHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHh
Q 014088 59 GAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNF 129 (431)
Q Consensus 59 g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l 129 (431)
..+|.++.++.+ .+.......+.....+...+.-. ...+.. .++.++.++.... ...+|..|+..+..+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~--LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ--ILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH--HHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 467777776643 45566666666666665433110 001111 4556666653221 127999999999999
Q ss_pred hcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcc
Q 014088 130 CRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSD 172 (431)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 172 (431)
++............+...+.+.+.++ +......|+..|..+..
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 98754433344466777777776654 55667778888877653
No 180
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=30.33 E-value=51 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 014088 381 TEIYEKAVKILETYWVEEDE 400 (431)
Q Consensus 381 ~~v~~~a~~~l~~~~~~e~~ 400 (431)
+++++.+..-+..||+++++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 57788899999999987554
No 181
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=29.82 E-value=2.2e+02 Score=23.07 Aligned_cols=136 Identities=10% Similarity=-0.072 Sum_probs=81.8
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 014088 24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 102 (431)
Q Consensus 24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 102 (431)
-|..++.-+.+..|+..+........+ ..++.+-.++.. .+..+....+.+++.+....+.. .
T Consensus 62 ~L~~s~~~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~ 125 (220)
T 2b6c_A 62 AYYQKTEREYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------L 125 (220)
T ss_dssp HHHTSSSHHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------H
T ss_pred HHHcCchhHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------H
Confidence 345556667788887777765421111 112233334443 66777776556666665433321 1
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 182 (431)
Q Consensus 103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 182 (431)
.+.+.... .+++.-+++.|+-.+... .........++.+..++.+++.-|++.+.|+|..++..+++....++
T Consensus 126 ~~~i~~W~-~s~~~w~rR~ai~~~l~~------~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFY-GAENFWNRRVALNLQLML------KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHTTTTC------GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 23344444 777888888877644211 11122244566666688888999999999999999998887655444
No 182
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=28.89 E-value=1.5e+02 Score=22.34 Aligned_cols=74 Identities=8% Similarity=-0.031 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215 (431)
Q Consensus 142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 215 (431)
..++..+.+.+....++-+-.++..+-.++++...........++.+.+.......++.++....+.+..+-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 46677777777777888888888888888876544444455557777777776666778888888887777644
No 183
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=28.85 E-value=2.4e+02 Score=23.11 Aligned_cols=142 Identities=10% Similarity=0.066 Sum_probs=77.3
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHH-HHHHHhccCChHHHHHHHH
Q 014088 106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDAC-WALSYLSDGTNDKIQAVIE 183 (431)
Q Consensus 106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~ 183 (431)
++..|-++...+.+..|+..+........ ...++.+-.++. .++-.+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHIN-------ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCC-------GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------
Confidence 33333355556666666666654322110 122333334443 34555544332 333433332221
Q ss_pred hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088 184 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263 (431)
Q Consensus 184 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 263 (431)
...+.+.....+++.-+++.++-.+..... ..... ..++.+...+.++ +.-+++...|+|..++..+++..
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~--~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQLKYKQ--KMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTTTTCGG--GCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHHh--CCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence 134556677777877777777654422211 11111 1234455666777 89999999999999999888877
Q ss_pred HHHHHhC
Q 014088 264 QAIIEAG 270 (431)
Q Consensus 264 ~~l~~~~ 270 (431)
...++..
T Consensus 202 ~~fl~~~ 208 (232)
T 3jxy_A 202 WEYVQNN 208 (232)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
Confidence 7666643
No 184
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.63 E-value=1.2e+02 Score=26.49 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 396 (431)
Q Consensus 360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 396 (431)
...|.+.+.-..+..|..|++++|+..|..++..|-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6778888888899999999999999999999988654
No 185
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.58 E-value=1.6e+02 Score=31.58 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=64.6
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088 111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 190 (431)
Q Consensus 111 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 190 (431)
.++.++.++..+......+.... .......++..|+...-+++..-...|+.+|..++...+...... .-.+..+
T Consensus 409 l~S~~~~v~~Fg~~lY~~lF~~f---d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~--a~~l~gi 483 (1323)
T 3s4w_B 409 FHSQDQRIILFGSLLYKYAFKFF---DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN--AAFVKGI 483 (1323)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT--HHHHHGG
T ss_pred HhCCCHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH--HHHHHHH
Confidence 35677888888888777776653 223346677777777776766666678999988887665433311 1234445
Q ss_pred HHhcCCCCcccHHHHHHHHhHhhc
Q 014088 191 VELLRHPSPSVLIPALRTVGNIVT 214 (431)
Q Consensus 191 ~~ll~~~~~~v~~~a~~~l~~l~~ 214 (431)
+..+.+-+..-.+....+++.++.
T Consensus 484 LD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 484 LDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHc
Confidence 555666565566667888888775
No 186
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.53 E-value=85 Score=24.03 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=51.4
Q ss_pred CHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 014088 271 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILKA 343 (431)
Q Consensus 271 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~al~~L~~l~~~ 343 (431)
++..|..-+.. .++.++..|+..|-.+..+++......+.+..++.. |..+++. ....++..++..+......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34556666664 477788889999999988888776666665556653 6666653 2347899999888877653
No 187
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=26.38 E-value=1.7e+02 Score=21.51 Aligned_cols=57 Identities=9% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088 105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 171 (431)
Q Consensus 105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 171 (431)
..++-| +.+.+.+...+.|++.+.-. ...++..+.+.+....++-+...+..+..+.
T Consensus 11 ~~L~~L-~~s~~sI~~~s~w~l~~~~~---------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl 67 (135)
T 4fu3_A 11 KKLSEL-SNSQQSVQTLSLWLIHHRKH---------AGPIVSVWHRELRKAKSNRKLTFLYLANDVI 67 (135)
T ss_dssp HHHHHC-CSSTTHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHH
T ss_pred HHHHHc-cccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 344555 45567888888898877432 2355666666666555555666666666554
No 188
>1f59_C NSP1P, FXFG nucleoporin repeats; protein-protein complex, transport protein receptor; 2.80A {Saccharomyces cerevisiae} SCOP: j.70.1.1
Probab=26.11 E-value=65 Score=15.67 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=9.7
Q ss_pred CCCcccCCCCCCCCCCCCcCC
Q 014088 411 QAGFGFAGNGLPVPSGGFNFG 431 (431)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ 431 (431)
--.||............|.||
T Consensus 7 afsfg~~~~~~~~~~~afsfg 27 (28)
T 1f59_C 7 AFSFGXXXXXXXXXXXAFSFG 27 (28)
T ss_dssp CCCSSSCCCCCCC---CCCC-
T ss_pred cccccccccccccceeeeecc
Confidence 334555555555566677776
No 189
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.78 E-value=1.1e+02 Score=22.47 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=54.8
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-----HHH
Q 014088 104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----DKI 178 (431)
Q Consensus 104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----~~~ 178 (431)
...++-| +.+.+.++..+.|++.+.-. ...++..+.+.+....++-+...+..+..+..+.. ...
T Consensus 11 ~~~L~~L-~~s~~sI~~~s~w~l~h~~~---------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 11 DRKFQSV-TNTMESIQGLSSWCIENKKH---------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHC-CSSHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHC-cccHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 3444555 45567788888898887432 24566777777777777777777777776664321 121
Q ss_pred HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212 (431)
Q Consensus 179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 212 (431)
. ... ..++.++.... +++.+....+++.-+
T Consensus 81 ~-~f~-~~l~~~~~~~~--~~~~~~kl~~ll~iW 110 (132)
T 4flb_A 81 E-SFA-DVLPEAAALVK--DPSVSKSVERIFKIW 110 (132)
T ss_dssp H-HHH-TTHHHHHHTTC--STTTHHHHHHHHHHH
T ss_pred H-HHH-HHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 2 122 34444444333 345565555555544
No 190
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=24.25 E-value=52 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC
Q 014088 381 TEIYEKAVKILETYWVEEDEDEP 403 (431)
Q Consensus 381 ~~v~~~a~~~l~~~~~~e~~~~~ 403 (431)
+++++.+..-++.||++.++|++
T Consensus 105 ~~I~~~v~e~~~~fFp~~~~~~~ 127 (127)
T 3on0_A 105 PAIDKFAREQVSIFFPDDEDDQE 127 (127)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCC-
T ss_pred HHHHHHHHHHHHhcCCCcccccC
Confidence 46677777778999999988874
No 191
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=21.27 E-value=41 Score=25.95 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.9
Q ss_pred CCCCCcccCCCCCCCCCC
Q 014088 409 ATQAGFGFAGNGLPVPSG 426 (431)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~ 426 (431)
.+-.||||+|-|.++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~ 152 (156)
T 3g16_A 135 LELGDFDYAGRGYRVTSP 152 (156)
T ss_dssp ECBTTCCTTTTTCCCSCT
T ss_pred ccccCCCccCCccccCCC
Confidence 456899999999998765
No 192
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=20.42 E-value=4.3e+02 Score=26.57 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=65.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc--ccchhHHHHHHHHHHHhhcCCCC--
Q 014088 60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQ-- 135 (431)
Q Consensus 60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~-- 135 (431)
+.|.+...+.+.+..+...+..+|.++|.-.|.+++.+. .+++..+...|.. -..+.-...++.+|..++.--..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 455666677888999999999999999976663333332 1233444444432 23444445566666655542211
Q ss_pred CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014088 136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 172 (431)
Q Consensus 136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 172 (431)
.-......++..++.-+..+|+.--..++..+..++.
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 1112334455555566667788777777777776654
Done!