BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014089
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 176 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 234
Query: 273 ANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAVAALQAADE 328
A KW+ K L++ + + LL S+K G A+ +LQ A++
Sbjct: 235 AYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAIRSLQEAEK 281
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 282 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 340
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP WT E +
Sbjct: 341 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 372
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 173 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 231
Query: 273 ANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAVAALQAADE 328
A KW+ K L++ + + LL S+K G A+ +LQ A++
Sbjct: 232 AYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAIRSLQEAEK 278
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 279 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 337
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP WT E +
Sbjct: 338 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 369
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ K + LA E ++Q+A + +L
Sbjct: 173 DLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKADHTLSSLEP 231
Query: 273 ANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAVAALQAADE 328
A KW+ K L++ + + LL S+K G A+ +LQ A++
Sbjct: 232 AYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAIRSLQEAEK 278
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 279 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 337
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP WT E +
Sbjct: 338 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 369
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ K + LA E ++Q+A + +L
Sbjct: 174 DLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKADHTLSSLEP 232
Query: 273 ANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAVAALQAADE 328
A KW+ K L++ + + LL S+K G A+ +LQ A++
Sbjct: 233 AYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAIRSLQEAEK 279
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 280 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 338
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP WT E +
Sbjct: 339 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 370
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ K + LA E ++Q+A + +L
Sbjct: 180 DLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKADHTLSSLEP 238
Query: 273 ANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAVAALQAADE 328
A KW+ K L++ + + LL S+K G A+ +LQ A++
Sbjct: 239 AYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAIRSLQEAEK 285
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 286 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 344
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP WT E +
Sbjct: 345 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 376
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 313 EKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSR----NPPLWGTMKYLSEKIPKDTS 368
E +HG+ L A D YF +A A N + R P W + + I ++ S
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 369 SKVRINRD---LYSYEKIMETAPTLPDFALALKPD-------EFQLPPVHPSWTD 413
V +N + +Y+ + ++ T P L+++P+ EFQ PP+ P D
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQ-SVLNLSVQPEKNLRGRIEFQ-PPLKPVIQD 284
>pdb|1EDG|A Chain A, Single Crystal Structure Determination Of The Catalytic
Domain Of Celcca Carried Out At 15 Degree C
Length = 380
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 28 VPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGS 87
+P L+IP+ +++ +N N V+ L A G IT + G
Sbjct: 7 IPNLQIPQ-----KNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIK 61
Query: 88 TLADLHQALED------YLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVL 141
T + A++ +PV GS YK+ VW+N+ E I N Y +L
Sbjct: 62 TTKQMIDAIKQKGFNTVRIPVSWHPHVSGSD--YKISDVWMNRVQEVVNYCIDNKMYVIL 119
Query: 142 SVLH 145
+ H
Sbjct: 120 NTHH 123
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 32 RIPKPVD-FSQS--LGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGST 88
RIP+P D F++S L + + ++A+ +++ E P T +A ST
Sbjct: 144 RIPEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPAST-----TAALVAAST 198
Query: 89 LADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWV 122
L+D++ +L L L G + G+ + QF+ +
Sbjct: 199 LSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEI 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,124,131
Number of Sequences: 62578
Number of extensions: 461021
Number of successful extensions: 958
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 16
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)