BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014089
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2Q7|BROX_MOUSE BRO1 domain-containing protein BROX OS=Mus musculus GN=Brox PE=2
SV=1
Length = 411
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 139/333 (41%), Gaps = 29/333 (8%)
Query: 90 ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
ADL+ +L +G S+L+Y F W + +A +A +E++S+ +A+
Sbjct: 61 ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120
Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
A+ L G + +E++ + + A + H+ ++P E R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173
Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
+L L D + QA Q V I + + +A LA + ++Q+A +
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYDTASFYQKADHTLS 228
Query: 269 NLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADE 328
+L A+ + L +K ++ A QT LL S+K G A+ +LQ A++
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFYTA----YAYCYHGQT----LLASDKC-GEAIRSLQEAEK 279
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ E++ C+ + P + P + L + K+T K + ++KI
Sbjct: 280 LYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTE 338
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP+ WT E +
Sbjct: 339 APQLELKANYGL-VEPVPFEFPPMSAHWTPEAL 370
>sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX OS=Rattus norvegicus GN=Brox
PE=2 SV=1
Length = 411
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 139/333 (41%), Gaps = 29/333 (8%)
Query: 90 ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
ADL+ +L +G S+L+Y F W + +A +A +E++S+ +A+
Sbjct: 61 ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120
Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
A+ L G + +E++ + + A + H+ ++P E R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173
Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
+L L D + QA Q V I + + +A LA E ++Q+A +
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYETASFYQKADHTLS 228
Query: 269 NLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADE 328
+L A+ + L +K ++ A QT LL S+K G A+ +LQ A++
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFYTA----YAYCYHGQT----LLASDKC-GEAIRSLQEAEK 279
Query: 329 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386
+ E++ C+ + P + P + L + K+T K + ++KI
Sbjct: 280 LYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTE 338
Query: 387 APTL---PDFALALKPDEFQLPPVHPSWTDENM 416
AP L ++ L ++P F+ PP+ WT E +
Sbjct: 339 APQLELKANYGL-VEPVPFEFPPMSALWTPEAL 370
>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2
SV=1
Length = 411
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 139/341 (40%), Gaps = 43/341 (12%)
Query: 92 LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
+ A + Y +L G + S+L+Y F W + +A +A +E++S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116
Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
+A+ A+ L G + +E++ + + A + H+ ++P
Sbjct: 117 NVALWHTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLITPA 169
Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
E R+L L E A +Q + ++ + AI+ K + LA E ++Q+A
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224
Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAV 320
+ +L A KW+ K L++ + + LL S+K G A+
Sbjct: 225 HTLSSLEPAYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAI 271
Query: 321 AALQAADEYFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378
+LQ A++ + +++ C+ + P + P + L + K+T K +
Sbjct: 272 RSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFI 330
Query: 379 SYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWTDENM 416
++KI AP L ++ L ++P F+ PP WT E +
Sbjct: 331 YFQKIPTEAPQLELKANYGL-VEPIPFEFPPTSAQWTPETL 370
>sp|Q5VW32|BROX_HUMAN BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1
SV=1
Length = 411
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 139/341 (40%), Gaps = 43/341 (12%)
Query: 92 LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
+ A + Y +L G + S+L+Y F W + +A +A +E++S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116
Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
+A+ A+ L G + +E++ + + A + H+ ++P
Sbjct: 117 NVALWYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPA 169
Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
E R+L L E A +Q + ++ + AI+ K + LA E ++Q+A
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224
Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL----LLPSEKFHGMAV 320
+ +L A KW+ K L++ + + LL S+K G A+
Sbjct: 225 HTLSSLEPAYS--------AKWR----KYLHLKMCFYTAYAYCYHGETLLASDKC-GEAI 271
Query: 321 AALQAADEYFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378
+LQ A++ + +++ C+ + P + P + L + K+T K +
Sbjct: 272 RSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFI 330
Query: 379 SYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWTDENM 416
++KI AP L ++ L ++P F+ PP WT E +
Sbjct: 331 YFQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWTPETL 370
>sp|P26954|IL3B2_MOUSE Interleukin-3 receptor class 2 subunit beta OS=Mus musculus
GN=Csf2rb2 PE=2 SV=1
Length = 878
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 160 LPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQM-----SPELRRELPVDL 214
LP +G P + S D YL H LP + SP++ L L
Sbjct: 568 LPNVQVEGPIPSSRPRKQLPSFDF---NGPYLGPPQSHSLPDLPGQLGSPQVGGSLKPAL 624
Query: 215 AEGDLRALCL------------QALGQG--VDIQLGMAIDSTKA-TLAVKRRLACEMVKY 259
G L +CL Q +GQG +D+Q G ++++T + ++ K E+
Sbjct: 625 P-GSLEYMCLPPGGQVQLVPLSQVMGQGQAMDVQCGSSLETTGSPSVEPKENPPVELSVE 683
Query: 260 WQQAQDNIMNLPLANG 275
Q+A+DN M LP+++G
Sbjct: 684 KQEARDNPMTLPISSG 699
>sp|P26955|IL3RB_MOUSE Cytokine receptor common subunit beta OS=Mus musculus GN=Csf2rb
PE=1 SV=2
Length = 896
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 38/165 (23%)
Query: 147 MAMLSLSQANLLLLPRTSADGYQPKVSEESR----------------RASVDIFLKAAGY 190
++ L++ N++ +P + D P S ES R + F Y
Sbjct: 537 VSPLTIEDPNIIRVPPSGPDT-TPAASSESTEQLPNVQVEGPTPNRPRKQLPSFDFNGPY 595
Query: 191 LDCAVRHVLPQM-----SPELRRELPVDLAEGDLRALCL------------QALGQG--V 231
L H LP + SP++ L L G L +CL Q +GQG +
Sbjct: 596 LGPPQSHSLPDLPDQLGSPQVGGSLKPALP-GSLEYMCLPPGGQAQLVPLSQVMGQGQAM 654
Query: 232 DIQLGMAIDSTKA-TLAVKRRLACEMVKYWQQAQDNIMNLPLANG 275
D+Q G +++++ + ++ K E+ Q+A+DN + LP+++G
Sbjct: 655 DVQCGSSLETSGSPSVEPKENPPVELSMEEQEARDNPVTLPISSG 699
>sp|Q4IBS9|BRO1_GIBZE Vacuolar protein-sorting protein BRO1 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRO1
PE=3 SV=1
Length = 995
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 38/239 (15%)
Query: 116 KVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175
K+ F W + S A+ + + ++ A+LS A Q + E
Sbjct: 88 KISFTWFDAFTHKSTAQYSLAFEKASIIFNISAVLSCHAA------------AQDRGEES 135
Query: 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQL 235
+ + + F +AG + L S +L RE ++AL L Q ++ L
Sbjct: 136 ALKTAYHNFQASAGMFTYINENFLHAPSSDLSRET--------VKALIHVMLAQAQEVFL 187
Query: 236 GMAI-DSTKATLAVKRRLACEMVKYWQQA----QDNIMNLPLANGWGEKHKLFVKWKYFE 290
+ D K L K LA + + QA Q+N+ W + +
Sbjct: 188 EKQVADKKKPALLAK--LASQAGYLYSQALEGVQENVTKAIFEKVW-------LLMTQIK 238
Query: 291 AKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRN 349
+ LLN + Q + L + HG+AV LQ A+ KE+++ +F + P+S N
Sbjct: 239 SNLLNSMA----QYYQALADEEQDKHGIAVGRLQTAETQAKEAERVARSFPNSVPMSSN 293
>sp|Q874P0|MTAL1_CANGA Mating-type-like protein ALPHA1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MTL1ALPHA1 PE=2 SV=1
Length = 191
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 355 TMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALAL---KPDEFQLPPVHP 409
TMKY + K T+ ++R + + + + T F L + KP++FQ+PP HP
Sbjct: 7 TMKYTATKFRVRTNKRLRSQKYPEKHSDFLGCSSTKSSFGLNMLLTKPNKFQIPPPHP 64
>sp|B2FQ39|RPOC_STRMK DNA-directed RNA polymerase subunit beta' OS=Stenotrophomonas
maltophilia (strain K279a) GN=rpoC PE=3 SV=1
Length = 1406
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L +A G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q4X0Z5|BRO1_ASPFU Vacuolar protein-sorting protein bro1 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=bro1 PE=3 SV=1
Length = 976
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 116 KVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175
K+ F W + + S A+ + + ++ A+LS AN Q + E
Sbjct: 88 KISFTWYDAFTHKPTSQYSLAYEKASIIFNISAVLSCHAAN------------QNRAEES 135
Query: 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQL 235
+ + F +AG + L S +L RE ++ L L Q ++ L
Sbjct: 136 GLKTAYHSFQASAGMFTYINENFLHAPSTDLNRET--------VKTLINITLAQAQEVFL 187
Query: 236 GMAI-DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLL 294
+ D KA K LA + + QA + I A G +K V +AK
Sbjct: 188 EKQVTDQKKAGFLAK--LASQAAYLYSQAAEGIQEY--AKGVFDKSWTIV----VQAKAA 239
Query: 295 NILIVLVDQTWFLLLLPSE-KFHGMAVAALQAADE 328
++ V +++ L SE HG+A+A LQ AD+
Sbjct: 240 HMASVA---SYYQALADSESNSHGVAIARLQLADK 271
>sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain 9a5c) GN=rpoC PE=3 SV=2
Length = 1407
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + T + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDATMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
++ L + ++ + +++ G + K+ ++R ++ F+++ + + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q6C1E4|PALC_YARLI pH-response regulator protein palC OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YALI0F17028g PE=3 SV=1
Length = 441
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 31/212 (14%)
Query: 27 YVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG 86
Y L P+ +Q + + + ++E A R R+ + ++ AT+ G
Sbjct: 5 YTGQLPTTSPLSLTQLITSDRYQQVIENADAARARV-------REQLKHAKKTGATEANG 57
Query: 87 STLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV------WVNQEDEAEETAISNAWYEV 140
+ + +ALE+Y+P + +V + ++ Q + + +Q A +T + +E
Sbjct: 58 DIMPVI-KALEEYMPHITSIVDNEGVFRFTSQIITCWRLPFQSQSSMANKTPLHGLSFEY 116
Query: 141 LSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD----CAVR 196
+ VL A L+L+ T A+ Y + E+ + + KA G +D C
Sbjct: 117 IMVLFTYA-LALA---------TLANQYVARDKEDRWKHASAYISKARGVVDYLRQCRSF 166
Query: 197 HVLPQMSPELRRELPVDLAEGDLRALCLQALG 228
++ P +P DL+ + AL G
Sbjct: 167 QIICNEPPA---SVPRDLSSATMSALSHMLCG 195
>sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=rpoC PE=3 SV=2
Length = 1405
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|B2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=rpoC PE=3 SV=1
Length = 1405
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q2NZX9|RPOC_XANOM DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=rpoC PE=3 SV=1
Length = 1405
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q8PC55|RPOC_XANCP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpoC PE=3 SV=1
Length = 1405
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q4URD3|RPOC_XANC8 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rpoC PE=3 SV=1
Length = 1405
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|B0RU88|RPOC_XANCB DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rpoC PE=3 SV=1
Length = 1405
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q3BWZ0|RPOC_XANC5 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rpoC PE=3 SV=1
Length = 1404
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q8PNS9|RPOC_XANAC DNA-directed RNA polymerase subunit beta' OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rpoC PE=3 SV=1
Length = 1404
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|C0RJK9|RPOC_BRUMB DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8YHP7|RPOC_BRUME DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rpoC
PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|A5VR14|RPOC_BRUO2 DNA-directed RNA polymerase subunit beta' OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|B0CH40|RPOC_BRUSI DNA-directed RNA polymerase subunit beta' OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|A6X0B0|RPOC_OCHA4 DNA-directed RNA polymerase subunit beta' OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpoC PE=3
SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8G070|RPOC_BRUSU DNA-directed RNA polymerase subunit beta' OS=Brucella suis biovar 1
(strain 1330) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|A9M5Q8|RPOC_BRUC2 DNA-directed RNA polymerase subunit beta' OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|B2RL44|RPOC_PORG3 DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=rpoC PE=3 SV=1
Length = 1433
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 97 EDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE------------VLSVL 144
E Y+ + G+ + SQL + ++++ DE E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 145 HLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC---AVRHVLPQ 201
L+ + L + L R + DG Q + +E +R V +A+ ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 202 MSPELRRELPVD---LAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMV 257
+ P+LR +P+D A DL L + + + ++ + I + + L ++R+ E V
Sbjct: 258 IPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAV 316
>sp|Q7MX26|RPOC_PORGI DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=rpoC PE=3 SV=1
Length = 1433
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 97 EDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE------------VLSVL 144
E Y+ + G+ + SQL + ++++ DE E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 145 HLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC---AVRHVLPQ 201
L+ + L + L R + DG Q + +E +R V +A+ ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 202 MSPELRRELPVD---LAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMV 257
+ P+LR +P+D A DL L + + + ++ + I + + L ++R+ E V
Sbjct: 258 IPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAV 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,052,170
Number of Sequences: 539616
Number of extensions: 6125961
Number of successful extensions: 17651
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 17650
Number of HSP's gapped (non-prelim): 54
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)