Query 014089
Match_columns 431
No_of_seqs 166 out of 445
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09243 BRO1_Brox_like Protein 100.0 9.9E-68 2.1E-72 532.2 35.1 331 31-402 7-353 (353)
2 cd09246 BRO1_Alix_like_1 Prote 100.0 2.7E-66 5.8E-71 525.0 32.1 333 26-404 2-344 (353)
3 cd09240 BRO1_Alix Protein-inte 100.0 4.3E-66 9.4E-71 522.4 31.9 328 25-403 3-345 (346)
4 cd09239 BRO1_HD-PTP_like Prote 100.0 7.5E-66 1.6E-70 522.2 31.6 334 26-404 9-350 (361)
5 cd09241 BRO1_ScRim20-like Prot 100.0 3.5E-65 7.6E-70 517.6 30.9 324 25-403 2-332 (355)
6 cd09242 BRO1_ScBro1_like Prote 100.0 9.8E-65 2.1E-69 512.9 32.1 335 26-403 2-346 (348)
7 cd09034 BRO1_Alix_like Protein 100.0 1.8E-59 3.8E-64 474.2 32.0 324 26-401 2-344 (345)
8 cd09244 BRO1_Rhophilin Protein 100.0 1.8E-59 3.9E-64 471.4 29.9 312 26-386 2-326 (350)
9 PF03097 BRO1: BRO1-like domai 100.0 4.4E-57 9.6E-62 461.7 26.9 320 26-404 3-337 (377)
10 cd09248 BRO1_Rhophilin_1 Prote 100.0 3.4E-54 7.4E-59 433.7 28.4 311 26-385 2-359 (384)
11 cd09247 BRO1_Alix_like_2 Prote 100.0 2.4E-54 5.2E-59 436.8 25.7 325 33-403 7-345 (346)
12 cd09245 BRO1_UmRIM23-like Prot 100.0 2.6E-53 5.7E-58 436.3 30.2 358 33-407 8-413 (413)
13 cd09249 BRO1_Rhophilin_2 Prote 100.0 4.9E-49 1.1E-53 396.0 28.5 314 26-386 2-361 (385)
14 KOG2220 Predicted signal trans 100.0 4.7E-45 1E-49 395.1 24.9 317 26-407 6-338 (714)
15 KOG2220 Predicted signal trans 97.9 5.2E-05 1.1E-09 83.7 9.7 183 22-236 99-282 (714)
16 cd02682 MIT_AAA_Arch MIT: doma 66.4 11 0.00024 29.9 4.3 29 308-336 14-42 (75)
17 PF08629 PDE8: PDE8 phosphodie 56.6 5.6 0.00012 28.7 0.9 8 1-8 1-8 (52)
18 cd02681 MIT_calpain7_1 MIT: do 54.4 53 0.0012 26.1 6.3 29 308-336 14-42 (76)
19 KOG2002 TPR-containing nuclear 50.5 52 0.0011 37.9 7.7 49 142-198 751-799 (1018)
20 PF15506 OCC1: OCC1 family 42.3 24 0.00052 26.2 2.3 12 1-12 1-12 (62)
21 cd02683 MIT_1 MIT: domain cont 36.3 58 0.0012 25.8 4.0 29 308-336 14-42 (77)
22 PF00515 TPR_1: Tetratricopept 30.8 56 0.0012 20.5 2.6 22 308-329 9-30 (34)
23 PF02071 NSF: Aromatic-di-Alan 30.7 20 0.00044 18.5 0.3 12 180-191 1-12 (12)
24 PF13424 TPR_12: Tetratricopep 29.0 1.9E+02 0.0041 21.7 5.8 36 137-192 42-77 (78)
25 KOG2003 TPR repeat-containing 27.4 8E+02 0.017 26.5 11.4 15 177-191 540-554 (840)
26 PF07719 TPR_2: Tetratricopept 27.1 72 0.0016 19.7 2.6 22 308-329 9-30 (34)
27 PF04212 MIT: MIT (microtubule 25.9 2.1E+02 0.0046 21.5 5.5 29 308-336 13-41 (69)
28 smart00671 SEL1 Sel1-like repe 24.9 1.4E+02 0.003 18.7 3.7 14 176-189 20-33 (36)
29 PF14615 Rsa3: Ribosome-assemb 24.5 1.5E+02 0.0032 21.4 4.0 17 45-61 8-24 (47)
30 cd02679 MIT_spastin MIT: domai 23.5 2.9E+02 0.0062 22.1 5.9 54 311-370 19-72 (79)
31 PF08631 SPO22: Meiosis protei 23.4 4.6E+02 0.01 25.5 8.8 110 133-268 27-145 (278)
32 cd02678 MIT_VPS4 MIT: domain c 22.8 2.7E+02 0.0059 21.5 5.7 29 308-336 14-42 (75)
33 PF08238 Sel1: Sel1 repeat; I 20.7 2.4E+02 0.0052 17.9 4.6 14 176-189 23-36 (39)
34 smart00745 MIT Microtubule Int 20.3 2.7E+02 0.0058 21.4 5.2 28 309-336 17-44 (77)
No 1
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=100.00 E-value=9.9e-68 Score=532.19 Aligned_cols=331 Identities=21% Similarity=0.370 Sum_probs=278.9
Q ss_pred CCCCccccc--chHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 014089 31 LRIPKPVDF--SQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVK 108 (431)
Q Consensus 31 lk~~~~vd~--~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~ 108 (431)
||-|..|+| .....+--++++|++|+..|++++++. .++ .++.++++++|++||++|.||+.
T Consensus 7 ~k~t~~~~f~~~~~~~~~~~~~~~~~~~~~r~~l~~~~---------------~~~-~~~~~~~~~a~~~Yl~ll~g~~~ 70 (353)
T cd09243 7 LKATAPVKFDLKGVATTPAASKLCSDLRTARARLLELL---------------SDP-SNDVDTVKTAFNAYLSLLQGFIL 70 (353)
T ss_pred cccccccccccccccCChhHHHHHHHHHHHHHHHHHHh---------------cCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 787776555 556777777899999999999999998 777 88999999999999999999986
Q ss_pred ------CCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089 109 ------DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD 182 (431)
Q Consensus 109 ------~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~ 182 (431)
.+++++..|.|+|+|+|+++.+++++|++||++||||||||+ |+++|+.++.. ++ .++||+|+||+
T Consensus 71 ~~d~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal-~s~~As~~~~~------~~-~s~e~~K~A~~ 142 (353)
T cd09243 71 ALDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALW-YTKHASKLAGK------ED-ITEDEAKDVHK 142 (353)
T ss_pred cccccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHH-HHHHHHHHhcc------CC-CCcHHHHHHHH
Confidence 568889999999999997778999999999999999999955 68887777644 23 35589999999
Q ss_pred HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089 183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ 262 (431)
Q Consensus 183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~ 262 (431)
+||+|||||+||+++++|.++.. ..+|+||++++|++|+.|||||||||+|+||++ ++++++||||||+|++++|++
T Consensus 143 ~fq~AAG~F~~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~-~k~k~sliaKLA~q~a~~Y~~ 219 (353)
T cd09243 143 SLRTAAGIFQFVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIE-LKHNAGLISALAYETAKLFQK 219 (353)
T ss_pred HHHHHHHHHHHHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999887642 346789999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089 263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKACEA 339 (431)
Q Consensus 263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~ 339 (431)
|.+.+++... .++.+| +++++|+..| .|.+ ||| +.+.++++||++|++|+.|.++++++.+.+++
T Consensus 220 A~~~l~~~~~--------~i~~~W~~~v~~K~~~f----~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a~~~~k~ 287 (353)
T cd09243 220 ADDSLSSLDP--------EYSGKWRKYLQLKSVFY----LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKAEALCKE 287 (353)
T ss_pred HHHHHHcCCc--------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999986432 244556 5555555333 1111 777 88899999999999999999999999999988
Q ss_pred cccCC-C-CCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCCCCCCC---ccccccccccc
Q 014089 340 FNVAP-P-LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLP---DFALALKPDEF 402 (431)
Q Consensus 340 ~~~~~-p-~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~lp~l~---~~~l~vkp~~~ 402 (431)
|.... + ....++....++.+.+.|++.+++++||||||| ||+||+++|.++ .+++ |+|+||
T Consensus 288 y~~~~~~~~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdfIY-h~~VP~e~p~~e~k~~~g~-~~~~~~ 353 (353)
T cd09243 288 YAKTKGPGTTAKPDQHLFFRKLGPLVKRTLEKCERENGFIY-HQKVPDEVPQLELKATYGL-VSPEEF 353 (353)
T ss_pred hhhccCccccccchhhHHHHHHHHHHHHHHHHHhhhhceec-cccCCCCCCccccccccCc-cCCCCC
Confidence 87653 3 222333344577888899999999999999999 999999998888 4569 999876
No 2
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=100.00 E-value=2.7e-66 Score=525.02 Aligned_cols=333 Identities=19% Similarity=0.228 Sum_probs=270.7
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHH-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL 104 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~ 104 (431)
+.|| +|+|.+|||.+||++||+++|.+ +.+.+++++..+. ++|+.++.+. +++ +..++.|.+||.+|.
T Consensus 2 l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~-~LR~~~~~~~----~~~-----~~~~~~l~~Yy~~L~ 70 (353)
T cd09246 2 LSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQ-QLRSEVRTLQ----EKH-----AASRELLLRYYRALC 70 (353)
T ss_pred CCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHH-HHHHHhhcCC----CCC-----hhHHHHHHHHHHHHH
Confidence 5688 99999999999999999999852 2344444443332 2222222222 121 244678999999999
Q ss_pred ccccCCCCc----ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089 105 GLVKDGSQL----QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180 (431)
Q Consensus 105 ~l~~~~~~~----~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A 180 (431)
.+..+++.. +.+|.|+|+|+|+++.+++++|+.||++|||||+||+ ||++|. . +++.++||+|+|
T Consensus 71 ~l~~rfp~~~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal-~s~~a~----~------~~~~~~~glK~A 139 (353)
T cd09246 71 AVESRFPISEESGHARVSFSWYDAFRPHRKATQANVHFEKAAVLFNLGAL-SSQLGL----Q------QDRTTAEGIKQA 139 (353)
T ss_pred HHHccCCCCcccccccceeEeeccCCCCcceeecchHHHHHHHHHHHHHH-HHHHHH----h------cCCCChHHHHHH
Confidence 987665322 3589999999999878999999999999999999955 698873 2 467889999999
Q ss_pred HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHH
Q 014089 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW 260 (431)
Q Consensus 181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y 260 (431)
|++||+|||||+||++++++.+.. .+++||++++|.+|..+||||||||+|+||+. ++++++||||||.|++++|
T Consensus 140 ~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~-~~~k~sliAKLa~qv~~~Y 214 (353)
T cd09246 140 CHAFQAAAGAFAHLRDKVSGKTGG----FRTPDLTAECLGMLESLMLAQAQECFYEKAVA-DGKSPAVCSKLAKQARSYY 214 (353)
T ss_pred HHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHH
Confidence 999999999999999999876543 34679999999999999999999999999999 7889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089 261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKAC 337 (431)
Q Consensus 261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~ 337 (431)
++|.+.+++..... .+...| +++++|+..| .+.++|| ..+.++++||++|+||+.|.+.++++.+..
T Consensus 215 ~~a~~~l~~~~~~~------~~~~~W~~~~~~K~~~f----~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~ 284 (353)
T cd09246 215 EEALEALDSPPLKG------HFDKSWVAHVQLKAAYF----RAEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQA 284 (353)
T ss_pred HHHHHHHhcccccc------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998654311 356789 8999998666 4444555 788899999999999999999999998875
Q ss_pred hhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089 338 EAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL 404 (431)
Q Consensus 338 ~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l 404 (431)
+... .+.+.+.++.+.+.|++.+++++||||||| ||+||+ +||+|++..| |||+|++-
T Consensus 285 ~~~~-------~~~~~~~~~~l~~~v~~~l~~aekdNd~IY-~~~VP~~~~Lp~i~~~~~-vk~i~~~~ 344 (353)
T cd09246 285 KGVN-------GDELIEAVSELEQVINELLERAEKENDCVY-LDRVPAPSDLPPLGAASM-VKPAAPPA 344 (353)
T ss_pred hcCC-------cHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCcccCCCCCCccc-ccCCCCcc
Confidence 4221 114667788999999999999999999999 999997 9999999999 99998554
No 3
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=100.00 E-value=4.3e-66 Score=522.38 Aligned_cols=328 Identities=22% Similarity=0.269 Sum_probs=263.6
Q ss_pred EEecCCCCCCcccccchHHhhHHHHHHH--HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHH
Q 014089 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV--ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPV 102 (431)
Q Consensus 25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~--~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~ 102 (431)
.+.|| +|+|.+|||.+||++||.++|. ++.+.++++|-.+. ++|+....+. .+ .+ +..++.|.+||.+
T Consensus 3 ~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~-~lR~~~~~~~----~~---~~-~~~~~~l~~Yy~q 72 (346)
T cd09240 3 FISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELN-KLRNNAVCRP----LD---KH-ESSLELLLRYYDQ 72 (346)
T ss_pred eeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHhhcCC----CC---cc-hhHHHHHHHHHHH
Confidence 46789 9999999999999999999997 53444443333222 1111110000 11 11 2345679999999
Q ss_pred HhccccCCCCc--ccceeEeeeccCCCC------ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCh
Q 014089 103 LLGLVKDGSQL--QYKVQFVWVNQEDEA------EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSE 174 (431)
Q Consensus 103 L~~l~~~~~~~--~~~v~F~W~ds~~~~------~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~ 174 (431)
|..+..+.+.. +.+|.|+|+|+|+.+ .+++++|+.||++||||||||+ +|++|+ . +++.++
T Consensus 73 L~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal-~s~la~----~------~~~~~~ 141 (346)
T cd09240 73 LCAIEPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAAL-QSQIAA----E------QNLDTD 141 (346)
T ss_pred HHHHHhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHH-HHHHHH----H------cCCCCh
Confidence 99886554322 368999999999742 4678999999999999999955 688873 1 467889
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHH
Q 014089 175 ESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLAC 254 (431)
Q Consensus 175 dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~ 254 (431)
||+|+||++||+|||||+||++++++.+.. .+++||++++|.+|..+||||||||||+||+. ++++++||||||.
T Consensus 142 eglK~A~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~-~~~k~~liAKLa~ 216 (346)
T cd09240 142 EGLKLAAKLFQQAAGIFNHLKETVLSALQQ----EPTPDLSPDTLSALSALMLAQAQEVFYLKATR-DKMKDAIIAKLAA 216 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence 999999999999999999999999877643 45679999999999999999999999999999 7889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHH
Q 014089 255 EMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFK 331 (431)
Q Consensus 255 q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~ 331 (431)
|++++|++|.+.+++... +..++.+| .++++|+..| .+.++|| +.+.++++||++|+||+.|.+.++
T Consensus 217 qv~~~Y~~a~~~l~~~~~------~~~~~~~W~~~~~~K~~~f----~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~ 286 (346)
T cd09240 217 QAADYYGDAFKQCQREDV------RSLLPKDWIPVLAGKQAYF----HALAEYHQSLVAKAQKKFGEEIARLQHALELIK 286 (346)
T ss_pred HHHHHHHHHHHHHhcchh------ccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 999999999999987654 12467789 8999998666 4444555 778999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089 332 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ 403 (431)
Q Consensus 332 ~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~ 403 (431)
++.+.++.+. .++.+.++|++.+++++||||||| ||+||+ +||+|++..| |||+|++
T Consensus 287 ~a~~~~~~~~-------------~~~~l~~~i~~~l~~aekDNd~IY-~e~VP~~~~L~~i~~~~~-vk~~p~~ 345 (346)
T cd09240 287 TAQSRAGEYV-------------DVKDFAAKISRALTAAKKDNDFIY-HDRVPDVKSLPPIGKAAL-AKPTPVN 345 (346)
T ss_pred HHHHHhcchh-------------HHHHHHHHHHHHHHHHhhccCeEe-ccCCCCchhccCCcCccc-ccCCCCC
Confidence 9988654221 267788899999999999999999 999996 8999999999 8999864
No 4
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=100.00 E-value=7.5e-66 Score=522.16 Aligned_cols=334 Identities=18% Similarity=0.162 Sum_probs=267.3
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~ 105 (431)
+.+| +|+|.+|||.+||++||.++|.++.+.+.+++-.+. ++|+....+ ..+ ...++.|.+||.+|..
T Consensus 9 l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~LR~~~~~~---------~~~-~~~~~~l~~Yy~qL~~ 76 (361)
T cd09239 9 LWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLE-QLRQEAVNP---------PRD-FEGCSVLKRYYGQLHL 76 (361)
T ss_pred cccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHhccC---------CCC-hHHHHHHHHHHHHHHH
Confidence 4566 999999999999999999999665444444443322 222221111 112 2345679999999988
Q ss_pred cccCCCCc---ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089 106 LVKDGSQL---QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD 182 (431)
Q Consensus 106 l~~~~~~~---~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~ 182 (431)
+..+++.. ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+ . +++.++||+|+||+
T Consensus 77 l~~rfp~~~~~~~~v~F~W~d~~~~-~~~~~~~l~fEka~vlfNigal-~sq~a~----~------~~r~~~~glK~A~~ 144 (361)
T cd09239 77 LQSRFPMGAGQEAAVPFTWTDIFSG-SEVTHEDIKFEEASVLYNIGAL-HSQLGA----S------DKRDSEEGMKVACT 144 (361)
T ss_pred HHhcCCCCccccccceeeeecccCC-CchhhhhHHHHHHHHHHHHHHH-HHHHHH----h------ccCCChHHHHHHHH
Confidence 76554322 24799999999984 7889999999999999999966 698872 2 46788999999999
Q ss_pred HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089 183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ 262 (431)
Q Consensus 183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~ 262 (431)
+||+|||||+||++++++.++ ++||++++|.+|..+||||||||||+||+. ++++++||||||.|++++|++
T Consensus 145 ~fq~AAG~F~~l~e~~~~~~~-------~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~-d~~k~sliAKLA~q~~~~Y~~ 216 (361)
T cd09239 145 HFQCAAWAFAYLREHYPQVYG-------AVDMSSQLLSFNYSLMLAQAQECLLEKSLL-DNRKSHITAKVSAQVVEYYKE 216 (361)
T ss_pred HHHHHHHHHHHHHHhccCCCC-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999876542 259999999999999999999999999999 788999999999999999999
Q ss_pred HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089 263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKACEA 339 (431)
Q Consensus 263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~ 339 (431)
|.+.+++......+ -...++.+| +++++|+..| .+.++|| ..+.++++||++|+||+.|...++++.+.++.
T Consensus 217 a~~~l~~~~~~~~~-~~~~i~~~W~~~v~~K~~~f----~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~~~~~~ 291 (361)
T cd09239 217 ALRALENWESNSKI-ILGKIQKEWRKLVQMKIAYY----ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAIKNAKG 291 (361)
T ss_pred HHHHHhcccccccc-cccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999864321000 011367789 9999998766 4444555 77889999999999999999999999988753
Q ss_pred cccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCcccccccccccCC
Q 014089 340 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALKPDEFQL 404 (431)
Q Consensus 340 ~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vkp~~~~l 404 (431)
... ...+.+.++.+.++|++.+++++||||||| ||+|| ++||+|+++.| |||+||+-
T Consensus 292 ~~~------~~~~~~~~~~l~~~i~~~l~~aekDNd~IY-he~VP~~~~L~~i~~~~~-vk~~p~~~ 350 (361)
T cd09239 292 QPD------TVNLQEALSFTMDVIGGKRNSAKKENDFIY-HEAVPKLDTLQAVKGANL-VKGIPFSP 350 (361)
T ss_pred CCc------chhHHHHHHHHHHHHHHHHHHHhcccCcee-ecCCCChhhcCCCcCccc-cccCCCCc
Confidence 211 112667788899999999999999999999 99999 58999999999 99998884
No 5
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=100.00 E-value=3.5e-65 Score=517.58 Aligned_cols=324 Identities=19% Similarity=0.268 Sum_probs=267.9
Q ss_pred EEecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014089 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL 104 (431)
Q Consensus 25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~ 104 (431)
.+.|| +|+|.+|||.+||++||.++|.++-+.++++|..+. ++|+.++++ . . + ...++.|.+||.+|.
T Consensus 2 ~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~-~lR~~~~~~-----~---~-~-~~~~~~l~~Yy~~L~ 69 (355)
T cd09241 2 LLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEID-KLRNDAINP-----E---P-S-VNGLSLLKEYYAQLV 69 (355)
T ss_pred cCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHhhCC-----C---C-C-hhHHHHHHHHHHHHH
Confidence 36789 999999999999999999999665555555543332 222222221 1 1 1 234678999999999
Q ss_pred ccccCCCCcccceeEeeeccCCCC--ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089 105 GLVKDGSQLQYKVQFVWVNQEDEA--EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD 182 (431)
Q Consensus 105 ~l~~~~~~~~~~v~F~W~ds~~~~--~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~ 182 (431)
.+..+.+ ..+|.|+|+|+|+++ .+++++|++||++||||||||+ ||+.|.. +++.+++|+|+||+
T Consensus 70 ~l~~rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal-~sq~a~~----------~~~~~~~glK~A~~ 136 (355)
T cd09241 70 VLSKKFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGAL-YSQLALS----------ENRYTDEGLKRACS 136 (355)
T ss_pred HHHhcCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHH-HHHHHHH----------cCCCChHHHHHHHH
Confidence 9876654 678999999999874 6899999999999999999966 6887721 36778999999999
Q ss_pred HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089 183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ 262 (431)
Q Consensus 183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~ 262 (431)
+||+|||||+||++++++.+ .++.||++++|.+|..+||||||||+|+||+. +++++++|||||.|++.+|++
T Consensus 137 ~fq~AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~k~sliAKLa~qv~~~Y~~ 209 (355)
T cd09241 137 YFQASAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAIS-DGTKDSLIAKLAAQVSDYYQE 209 (355)
T ss_pred HHHHHHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999998764 24579999999999999999999999999999 677899999999999999999
Q ss_pred HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089 263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKACEA 339 (431)
Q Consensus 263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~ 339 (431)
|.+.++..+. +...| .++++|+..| .+.+||| ..+.++++||++|+||+.|.+.++++.+.++.
T Consensus 210 a~~~l~~~~~---------i~~~W~~~v~~K~~~f----~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~~~ 276 (355)
T cd09241 210 ALKYANKSDL---------IRSDWINHLKVKKHHF----KAAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEARY 276 (355)
T ss_pred HHHHHhcCCc---------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999985543 56789 8888888665 3334555 77888999999999999999999999988663
Q ss_pred cccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089 340 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ 403 (431)
Q Consensus 340 ~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~ 403 (431)
. .+.+.+.++.+.+.|++.+++++||||||| ||+||+ +||+|++..| |||++++
T Consensus 277 ~--------~~~~~~~~~~l~~~i~~~l~~aekdNd~IY-~e~VP~~~~L~~i~~~~~-vk~~~~~ 332 (355)
T cd09241 277 G--------NKAVLEDLQGLKDIVKESLKRAERDNDLIY-LQPVPPASELPPIKPASM-VKAIVPP 332 (355)
T ss_pred c--------chhHHHHHHHHHHHHHHHHHHHhhccCeeC-CcCCCCcccCCCCCCccc-ccccCch
Confidence 3 223556678889999999999999999999 999996 9999999999 9999764
No 6
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=100.00 E-value=9.8e-65 Score=512.89 Aligned_cols=335 Identities=18% Similarity=0.190 Sum_probs=265.7
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~ 105 (431)
+.+| +|+|.+|||.+||++||.++|.++-..+++++-.+. ++|+.++.+. . + +..++.+.+||.+|..
T Consensus 2 l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~lR~~~~~~~--------~-~-~~~~~~l~~Yy~qL~~ 69 (348)
T cd09242 2 ISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFD-RLRQDANGVL--------A-D-ETGRDLLYKYYGQLEL 69 (348)
T ss_pred CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCC--------C-C-HHHHHHHHHHHHHHHH
Confidence 5678 999999999999999999998554444444433332 2222211111 1 2 3446679999999988
Q ss_pred cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089 106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI 183 (431)
Q Consensus 106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~ 183 (431)
+..+++.. ..+|.|+|+|+|+++.+++++|++||++|||||+||+ ||++|.. +++.+++|+|.||++
T Consensus 70 l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal-~s~~A~~----------~~~~~~~~~K~A~~~ 138 (348)
T cd09242 70 LELRFPFNNKELKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGAL-LSQLAAE----------KYREDEDDLKEAITN 138 (348)
T ss_pred HHhhcCCCCccccceeeeeecCCCCCceeecchHHHHHHHHHHHHHH-HHHHHHH----------hccCChHHHHHHHHH
Confidence 75554322 3689999999999668999999999999999999965 6888732 245689999999999
Q ss_pred HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc---cchHHHHHHHHHHHHHH
Q 014089 184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK---ATLAVKRRLACEMVKYW 260 (431)
Q Consensus 184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k---~k~slIAKLA~q~s~~Y 260 (431)
||+|||||+||++++++. ++.||++++|.+|..+||||||||+|+||+. ++ ++++||||||+|++++|
T Consensus 139 fq~AAG~f~~l~e~~~~~--------ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~~~~k~sliaKLa~~~~~~Y 209 (348)
T cd09242 139 LQQAAGCFQYINENFLHA--------PSVDLQQENVKFLVKLMLAQAQEIFLLKLIN-GDDAQKKASLISKLASATANLY 209 (348)
T ss_pred HHHHHHHHHHHHHhcCCC--------CCccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccchHHHHHHHHHHHHHH
Confidence 999999999999998653 3469999999999999999999999999999 55 89999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089 261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKAC 337 (431)
Q Consensus 261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~ 337 (431)
++|.+.+++..... +..++..| .++++|+..| .+.+ ||+ .++.++++||++|+||+.|.+.++++.+.+
T Consensus 210 ~~a~~~l~~~~~~~----~~~~~~~W~~~~~~K~~~f----~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~ 281 (348)
T cd09242 210 ESCVEFLKEIQEKG----ISYGDPKWISLVQCKAHYY----KSLAAYYHALALEAAGKYGEAIAYLTQAESILKEANPQK 281 (348)
T ss_pred HHHHHHHhcccccc----ccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754310 01256689 8888887555 2333 555 888999999999999999999999999876
Q ss_pred hhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089 338 EAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ 403 (431)
Q Consensus 338 ~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~ 403 (431)
+.+..+. ....+.+.+.++.+.+.|++.+++++||||||| |++||+ +||+|++..| |||+|++
T Consensus 282 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY-~~~VP~~~~L~~i~~~~~-vk~~p~~ 346 (348)
T cd09242 282 LSLKASA-GDAAYALNDDFKGQKDTVEEKLKELEKDNDFIY-HDIVPSEVTLPSIKPLDA-AKPIPIE 346 (348)
T ss_pred hcCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHhcccCeec-cCCCCCccccCCCCcccc-CCCCCCc
Confidence 5443211 111234777899999999999999999999999 999996 8999999999 8998754
No 7
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=100.00 E-value=1.8e-59 Score=474.17 Aligned_cols=324 Identities=35% Similarity=0.516 Sum_probs=266.7
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHH-----------HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHH
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMV-----------ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQ 94 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~-----------~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~ 94 (431)
+.+| ||+|.+|||..+|+++|.++|. ++++++|++++... .++ ++.+.+++
T Consensus 2 i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~---------------~~~--~~~~~~~~ 63 (345)
T cd09034 2 IGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQ---------------NND--TTCENLLE 63 (345)
T ss_pred CCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhc---------------cCC--cchHHHHH
Confidence 4577 9999999999999999999874 46777777766554 222 14567889
Q ss_pred HHHHHHHHHhccccCCC--CcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 014089 95 ALEDYLPVLLGLVKDGS--QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKV 172 (431)
Q Consensus 95 ~l~~Yl~~L~~l~~~~~--~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~ 172 (431)
+|.+||++|.+|..+.+ ..+.+|.|+|+|+|+.+.++.. |++||++|||||+|++ |++.|.. +++.
T Consensus 64 ~l~~Y~~~L~~l~~~~~~~~~~~~i~F~W~d~~~~~~~~~~-~l~fE~~~vLfn~aa~-~s~~a~~----------~~~~ 131 (345)
T cd09034 64 ALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESAT-SLRYELLSILFNLAAL-ASQLANE----------KLIT 131 (345)
T ss_pred HHHHHHHHHHHHHhcCCcccccccceeEeecccCCCcchhh-hHHHHHHHHHHHHHHH-HHHHHHh----------ccCC
Confidence 99999999999876654 4467899999999997666666 9999999999999966 5776621 2344
Q ss_pred C-hHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHH
Q 014089 173 S-EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRR 251 (431)
Q Consensus 173 s-~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAK 251 (431)
+ ++++|.||++||+|||||+||++++++..+. .+++||++++|.+|..+||||||||+|+||+.+.++++++|||
T Consensus 132 ~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liak 207 (345)
T cd09034 132 GSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLAR 207 (345)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 5 7999999999999999999999999877653 2667999999999999999999999999999943389999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHH
Q 014089 252 LACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADE 328 (431)
Q Consensus 252 LA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~ 328 (431)
||+|++++|++|.+.+++.+... ...++.+| .++.+|...| .+.+ ||+ ..+.+.+++|++|+||+.|..
T Consensus 208 La~~~~~~y~~A~~~l~~~~~~~----~~~~~~~w~~~v~~K~~~~----~a~a~~~~a~~~~e~~~~G~aia~L~~A~~ 279 (345)
T cd09034 208 LACEAAKYYEEALKCLSGVDLET----IKNIPKKWLLFLKWKKCIF----KALAYYYHGLKLDEANKIGEAIARLQAALE 279 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCchh----hhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999766420 01255677 7777776544 3333 445 788889999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccc
Q 014089 329 YFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDE 401 (431)
Q Consensus 329 ~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~ 401 (431)
.++++.+.++.+.. ++++.++.+.++|++.+++++||||+|| ||+||+ +||++++..+ |+|.|
T Consensus 280 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~Lp~i~~~~~-v~~~p 344 (345)
T cd09034 280 LLKESERLCKSFLL--------DVWGNLKKLKEKIEKELEKAERENDFIY-FEEVPPEDPLPEIKGALL-VKPPP 344 (345)
T ss_pred HHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHhhhhHhh-cccCCCCCCCCccccccc-cCCCC
Confidence 99999998765431 3677889999999999999999999999 999997 5999999999 77764
No 8
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=100.00 E-value=1.8e-59 Score=471.43 Aligned_cols=312 Identities=17% Similarity=0.155 Sum_probs=256.8
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~ 105 (431)
+.+| ||+|++|||.+||++||.++|.++.+.+.+++..+. ++|+.++++.| + +..++.|.+||.+|..
T Consensus 2 i~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~-~LR~~~~~~~~---------~-~~g~~~L~~YY~qL~~ 69 (350)
T cd09244 2 IPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFT-DLRQAMRTPSR---------D-EAGIELLFEYYNQLYF 69 (350)
T ss_pred CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhhCCCC---------C-hhHHHHHHHHHHHHHH
Confidence 4566 999999999999999999999877777777665543 45555555442 1 2345679999999998
Q ss_pred cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089 106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI 183 (431)
Q Consensus 106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~ 183 (431)
+..++++. ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+. ++|.+++|+|+||++
T Consensus 70 le~RFp~~~~~~~v~F~W~Ds~~~-~~~~q~sl~fEkasVLFNigAl-~Sq~aa~----------~~r~~~eglK~A~~~ 137 (350)
T cd09244 70 VERRFFPPDRSLGIYFHWYDSLTG-VPSVQRSVAFEKASVLFNIGAL-YTQIGAK----------QDRTTEEGIEAAVDA 137 (350)
T ss_pred HHhcCCCccccccceeeeecccCC-CccccccHHHHHHHHHHHHHHH-HHHHHHH----------hccCChHHHHHHHHH
Confidence 76555333 25899999999987 7899999999999999999955 6998732 467899999999999
Q ss_pred HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHH-----HHHHHHHHHH
Q 014089 184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAV-----KRRLACEMVK 258 (431)
Q Consensus 184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sl-----IAKLA~q~s~ 258 (431)
||+|||||+||++++.+. +++||++++|++|..|||||||||||+||+.+..+++++ |||||.|+++
T Consensus 138 Fq~AAG~F~~l~e~~~~~--------ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~ 209 (350)
T cd09244 138 FQRAAGAFNYLRENFSNA--------PSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSD 209 (350)
T ss_pred HHHHHHHHHHHHHhccCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 999999999999997542 346999999999999999999999999999843377887 9999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHH-H-HhcCccchhHHHHHHHHHHHHHHHHHHH
Q 014089 259 YWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWF-L-LLLPSEKFHGMAVAALQAADEYFKESKK 335 (431)
Q Consensus 259 ~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~-~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~ 335 (431)
+|++|.+.++..... ..++.+| .++++|+..| .+.++| + +.+.+.+++|++|++|+.|..+.+++.+
T Consensus 210 ~Y~~a~~~~~~~~~~------~~i~~~W~~~v~~K~~~f----~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~~ 279 (350)
T cd09244 210 CYSEVHKLMNQEPVK------DYIPYSWISLVEVKSEHY----KALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEALR 279 (350)
T ss_pred HHHHHHHHHhccccc------cccCHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999854432 1467789 8999998666 333444 4 8889999999999999999999999999
Q ss_pred H---HhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCC
Q 014089 336 A---CEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 386 (431)
Q Consensus 336 ~---~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~ 386 (431)
. |+.+.. ...+.+.++..++++..+++++++||||+| |..||+-
T Consensus 280 ~~~~c~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~p~~ 326 (350)
T cd09244 280 LHRMCRFLRN------VDSLQEVLKEAHDRSLNKYSSLEEEDDFSD-ALDAPDI 326 (350)
T ss_pred HHHHHhhhcc------hHHHHHHHHHHHHHHHHHHHhhccccchhh-ccccCCc
Confidence 5 554432 345888999999999999999999999999 9888764
No 9
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=100.00 E-value=4.4e-57 Score=461.69 Aligned_cols=320 Identities=23% Similarity=0.297 Sum_probs=247.9
Q ss_pred EecCCCCCCcccccchHHhhHHHHHH----------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNM----------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA 95 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~ 95 (431)
+.+| +|+|++|||.++|++||.++| +++++.+|+++.... +..+.+++.
T Consensus 3 ~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~--------------------~~~~~~~~~ 61 (377)
T PF03097_consen 3 LSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQ--------------------SPSESGLKL 61 (377)
T ss_dssp --------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS---------------------SSHHHHHH
T ss_pred CCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccC--------------------CCchhHHHH
Confidence 4567 999999999999999999987 446777777754321 122456778
Q ss_pred HHHHHHHHhccccCCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChH
Q 014089 96 LEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175 (431)
Q Consensus 96 l~~Yl~~L~~l~~~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~d 175 (431)
|.+||++|..+..+.+....+|.|+|+|+|+.+.+++++++.||++|||||+|++ |++.|+.. ++.+++
T Consensus 62 l~~Y~~~L~~l~~~~p~~~~~i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~-~s~~a~~~----------~~~~~~ 130 (377)
T PF03097_consen 62 LEEYYPQLESLEKRFPSDQIQISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAAL-YSQLAASQ----------NRSTDE 130 (377)
T ss_dssp HHHHHHHHHHHCCCSCSSCCTT-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHH-HHHHHHHS-----------TTSHH
T ss_pred HHHHHHHHHHHHHhcccccceeeEeeeccccCCCcccchhhHHHHHHHHHHHHHH-HHHHHHhc----------ccccch
Confidence 9999999999876664334579999999997668999999999999999999955 68876332 456899
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHH
Q 014089 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACE 255 (431)
Q Consensus 176 glK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q 255 (431)
++|.|+++||+|||||+||++++.. .++.||++++|.+|..+||||||||+|+||+. +++++++|||||.+
T Consensus 131 ~~k~A~~~fq~AAg~f~~l~~~~~~--------~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~-~~~~~~liAKLa~~ 201 (377)
T PF03097_consen 131 GLKEACNYFQRAAGIFQYLRENFKD--------SPSPDLSPEVLSALSNLMLAQAQECFYEKAIA-DKKKPSLIAKLAAQ 201 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSS---------SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTG-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc--------cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-ccCchHHHHHHHHH
Confidence 9999999999999999999999432 23459999999999999999999999999999 78899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHH
Q 014089 256 MVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKE 332 (431)
Q Consensus 256 ~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~ 332 (431)
++++|++|.+.++...... .+...| .++.+|...| .|.++|| ..+.+.++||++|+||+.|.+.+++
T Consensus 202 ~~~~Y~~a~~~l~~~~~~~------~~~~~w~~~~~~K~~~~----~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~ 271 (377)
T PF03097_consen 202 ASELYDEAHEALQSSPLSE------SIPKDWRSYVQVKSAYY----RALAHYHQALAAEEAKKYGEAIARLRRAEEALKE 271 (377)
T ss_dssp HHHHHHHHHHHHTTCHHHH------CSHCCHHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccc------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 9999999999999876411 245689 8888888666 3444555 7779999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089 333 SKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL 404 (431)
Q Consensus 333 a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l 404 (431)
+.+.++.+ ...+.+...++.+.+.|+..+++++||||+|| |++||+ ++|++++..+ |+|+|++-
T Consensus 272 a~~~~~~~------~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~L~~~~~~~~-vk~~~~~~ 337 (377)
T PF03097_consen 272 ASKLAKKC------SKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY-HEPVPSESELPPIKPASM-VKPIPPPE 337 (377)
T ss_dssp HHHHCCCH------SCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT---S--SCGGSGGS-SSST-T----HHC
T ss_pred HHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCCcccccccccccc-cCCCCCcc
Confidence 99886543 12445777899999999999999999999999 999996 5889999999 99987663
No 10
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=100.00 E-value=3.4e-54 Score=433.69 Aligned_cols=311 Identities=15% Similarity=0.114 Sum_probs=244.4
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~ 105 (431)
+.+| +|+|.+|||.+||++||.++|.++.+.++++|..+. ++|+.++++.+ + +..++.|.+||.+|..
T Consensus 2 i~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~---------~-~sgle~L~~YY~qL~~ 69 (384)
T cd09248 2 IPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELE-DLRQAMRTPSR---------S-EAGLELLMAYYNQLCF 69 (384)
T ss_pred CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCC---------C-hhHHHHHHHHHHHHHH
Confidence 4577 999999999999999999999776666666655443 34444333321 1 2345679999999998
Q ss_pred cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089 106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI 183 (431)
Q Consensus 106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~ 183 (431)
+..+++.. ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|. . ++|.++||+|.||++
T Consensus 70 Le~RFp~~~~~~~v~FtW~Daf~~-~~~~q~sl~FEKasVLFNigAL-~Sqlaa----~------~~r~t~eGlK~A~~~ 137 (384)
T cd09248 70 LDARFFPPAKSLGLFFHWYDSLTG-VPAQQRALAFEKGSVLFNIGAL-HTQIGA----R------QDRSCTEGTRRAIDA 137 (384)
T ss_pred HHhcCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHH-HHHHHh----h------ccCCChHHHHHHHHH
Confidence 86555332 25899999999986 6899999999999999999977 699872 2 478899999999999
Q ss_pred HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhH-------hhcccchHHHHHHHHHH
Q 014089 184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-------DSTKATLAVKRRLACEM 256 (431)
Q Consensus 184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi-------~~~k~k~slIAKLA~q~ 256 (431)
||+|||||+||++++.+. |++||++++|.+|..|||||||||||+|++ . +++++++|||||.|+
T Consensus 138 FQ~AAG~F~~L~e~~~~~--------Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~-d~~k~~~iAKlAaQv 208 (384)
T cd09248 138 FQRAAGAFSLLRENFSNA--------PSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQ-DFFAQLQLAQEAAQV 208 (384)
T ss_pred HHHHHHHHHHHHHHhccC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccchhhHHHHHHHHH
Confidence 999999999999996532 346999999999999999999999999999 4 678899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcC----------------------
Q 014089 257 VKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLP---------------------- 311 (431)
Q Consensus 257 s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~---------------------- 311 (431)
+++|++|++.++..... ..+...| .++++|+..| .|.++|| .++.
T Consensus 209 s~~Y~~a~~~~~~~~~~------~~i~~~W~~~v~~K~~hF----~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~ 278 (384)
T cd09248 209 AAEYRLVHRTMAQPPVR------DYVPFSWTALVHVKAEHF----CALAHYHAAMALCDSSPASEGELATQEKAFLQPHT 278 (384)
T ss_pred HHHHHHHHHHHhccccc------ccCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccccchHHHHHHhccCCC
Confidence 99999999999855542 1366789 9999999776 3344555 5532
Q ss_pred -------------ccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhccccccc
Q 014089 312 -------------SEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378 (431)
Q Consensus 312 -------------~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY 378 (431)
+..+.|+ ++|+.|....+||.++.+- +.. ......+.+.++..+++...++...++||||+|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~--ahl~~a~~~~eea~r~~~~-c~~--l~~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~ 353 (384)
T cd09248 279 SQPEGPSLPQEPEERRKLGK--AHLKRAILGQEEALRLHAL-CRI--LRKVDLLQAVLTQALRRSLAKYSELDREDDFFE 353 (384)
T ss_pred CCCCccccccChHHHHHHHH--HHHHHHHHhhHHHHHHHHH-HHH--hccHHHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 1245666 8999999999999988441 100 111233677888888899999999999999999
Q ss_pred CCCccCC
Q 014089 379 SYEKIME 385 (431)
Q Consensus 379 ~hq~VP~ 385 (431)
...-|+
T Consensus 354 -~~~~~~ 359 (384)
T cd09248 354 -TGEAPD 359 (384)
T ss_pred -ccccCc
Confidence 665555
No 11
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=100.00 E-value=2.4e-54 Score=436.84 Aligned_cols=325 Identities=18% Similarity=0.226 Sum_probs=245.7
Q ss_pred CCcccccchHHhhH---HHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 014089 33 IPKPVDFSQSLGDN---LSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKD 109 (431)
Q Consensus 33 ~~~~vd~~~~l~~~---I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~~ 109 (431)
.|+.|.|...+..- -..++-+ .+..|+.+.... ....+.+.+ ..+ -..+....|..|++.|.++..+
T Consensus 7 ~t~~~~f~~~~~~~~~~t~~~l~~-~s~~r~~~~~~~---~~~~~~~~~---~~~---~~~~yl~~L~~~~~~L~~~~~~ 76 (346)
T cd09247 7 KTKKIVFEKTFQARDSLTLEQLKE-LSLRRRAIIESI---NGSPFIALA---IAR---EKAQYLPYLEGYLPALENLVNH 76 (346)
T ss_pred CccccchhhhhhcCCcccccccch-hhHHHHHHHHHh---hcCCCccHH---HHH---hhhhHHHHHHHHHHhhccCCcc
Confidence 55667776655554 2223344 566565554432 111112111 111 0013456788888888887655
Q ss_pred C--CCcccceeEeeeccCCC---CccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHH
Q 014089 110 G--SQLQYKVQFVWVNQEDE---AEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIF 184 (431)
Q Consensus 110 ~--~~~~~~v~F~W~ds~~~---~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~f 184 (431)
. ..++.+|.|+|+|+|++ ...+++.+++||++|||||+|++ ||++|..+ ...|++|.||++|
T Consensus 77 ~~~~~l~~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~-~s~~A~~~------------~~~e~~K~A~~~l 143 (346)
T cd09247 77 RDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAA-LRERASEV------------LPTEDFKEAATHL 143 (346)
T ss_pred chHHhhcccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHH-HHHHHHHh------------ccHHHHHHHHHHH
Confidence 3 24678999999999987 34578889999999999999965 68887432 1237899999999
Q ss_pred HHHHhHHHHHHHhhCCCCCccc-ccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHH
Q 014089 185 LKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQA 263 (431)
Q Consensus 185 q~AAG~F~~l~e~~l~~~~~~~-~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~A 263 (431)
|+|||||+||+++++|.+..+. ...+|+||+++++.+|+.|||||||||+|+||++ ++++++||||||+|++++|++|
T Consensus 144 ~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~-~~~~~sliAKLa~~~~~~y~~A 222 (346)
T cd09247 144 RRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEE-KGTSPSLLAKLHYGATQFLEEA 222 (346)
T ss_pred HHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543 3456789999999999999999999999999999 6789999999999999999999
Q ss_pred HHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 014089 264 QDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKACEAF 340 (431)
Q Consensus 264 ~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~ 340 (431)
.+.+++.... +. .+..+| +++.+|...| .+.+ ||+ .++.++++||++|++|+.|.+.++++.+.+..+
T Consensus 223 ~~~l~~~~~~--~~---~i~~~~~~~l~~k~~~~----~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~~ 293 (346)
T cd09247 223 KNVLRSLATD--LK---DLDPRFLRFISSCIALH----EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDIS 293 (346)
T ss_pred HHHHHccCcc--hh---hcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCchh
Confidence 9999865421 00 244567 6776666444 2223 566 888899999999999999999998887653211
Q ss_pred ccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089 341 NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ 403 (431)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~ 403 (431)
....++.+.+.|+..+++++||||||| ||+||+ +||+|++..| |+|+||+
T Consensus 294 -----------~~~~~~~~~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~~~~~~~-vk~ip~~ 345 (346)
T cd09247 294 -----------SPVIFRDERAEVATLLQKYEKENEVIY-FEKVPDIDELPLPEGKVI-VKPVPYK 345 (346)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHhccCeEE-eecCCCccccCCCccccc-eeecCCC
Confidence 235577888899999999999999999 999995 6999999999 9999986
No 12
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=100.00 E-value=2.6e-53 Score=436.25 Aligned_cols=358 Identities=18% Similarity=0.178 Sum_probs=261.7
Q ss_pred CCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhccccCCC-
Q 014089 33 IPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGS- 111 (431)
Q Consensus 33 ~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~~~~- 111 (431)
.|..|.|...+.+--...++.+.+..|.++.... ....|+++ ... .+.+..++++|++||++|.+|..+.+
T Consensus 8 tTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~l---k~~k~~~~----~~~-~~~~~~~~~aL~~Ylp~L~~l~~~~~~ 79 (413)
T cd09245 8 TTSSISFSDFFNSDSYPSLPLNATTARAVLRAAL---KAHKRTPP----GSQ-ASNLLTVVKALEEYLPYLLAIDACLSH 79 (413)
T ss_pred CCcccchhhhcCCCcccchhhHHHHHHHHHHHHH---HhcccCCc----ccc-cccHHHHHHHHHHHHHHHHHHHccCCc
Confidence 5667888866666444467899999999987765 22222222 222 35567889999999999999876543
Q ss_pred ---CcccceeEeeeccCCCCc-----cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCC------CCCCCChHh
Q 014089 112 ---QLQYKVQFVWVNQEDEAE-----ETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTS-ADG------YQPKVSEES 176 (431)
Q Consensus 112 ---~~~~~v~F~W~ds~~~~~-----~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~-~~g------~~~~~s~dg 176 (431)
.++..|.|+|+|+|+++. .+++++++||++|||||+|++ ||+.|..+....+ .+. ...+.++|+
T Consensus 80 ~~~~l~~~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l-~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~ 158 (413)
T cd09245 80 DELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYA-LSNLARSILAPLGAYETDRSISDASRKQRDER 158 (413)
T ss_pred chhcccccceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHH-HHHHHHHHhcccccccccccccccccccchHH
Confidence 334679999999997653 489999999999999999955 6777744321100 000 123678999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhCCCCCccc-ccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhh------c-------
Q 014089 177 RRASVDIFLKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS------T------- 242 (431)
Q Consensus 177 lK~A~~~fq~AAG~F~~l~e~~l~~~~~~~-~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~------~------- 242 (431)
+|.|+++||+|||||+||+++++|.+..+. ...+|+||+++++.+|+.|||||||||+|+|++.. +
T Consensus 159 lK~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~ 238 (413)
T cd09245 159 LKAATKLLCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPP 238 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCcc
Confidence 999999999999999999999998876432 23567899999999999999999999999998762 1
Q ss_pred --cc--chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccch
Q 014089 243 --KA--TLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKF 315 (431)
Q Consensus 243 --k~--k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k 315 (431)
|+ +++||||||++++++|++|.+.++..+....+ ..+..+| +|+..|+..| .+.+ ||+ +++.++++
T Consensus 239 ~~k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~---~~i~~~~~~yl~~k~~~~----~A~A~~~~g~d~~e~~k 311 (413)
T cd09245 239 LPKVHPSAHLLARLCLAASEHAESARALLSTPGSKRGS---GEVSEELLRYLSDLRRVA----RALACKFLGIDAGENGK 311 (413)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc---ccccHHHHHHHHHHHHHH----HHHHHHHHHHhhHhcCC
Confidence 22 56999999999999999999999876542111 1244567 6666665333 2222 667 88899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCC-CC-------CCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--
Q 014089 316 HGMAVAALQAADEYFKESKKACEAFNVAP-PL-------SRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME-- 385 (431)
Q Consensus 316 ~GeaIa~L~~A~~~l~~a~~~~~~~~~~~-p~-------~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~-- 385 (431)
||++|++|+.|...++++......-.... +. .+....+..++...++|++.+++++||||+|| ||+||+
T Consensus 312 ~GeaIa~L~~A~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~~~K~ND~Iy-~q~VP~~~ 390 (413)
T cd09245 312 VGEAIGWLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKMNDTVS-FQPVPPSS 390 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHhcceee-eecCCChH
Confidence 99999999999999887775321000000 00 00111113467788899999999999999999 999996
Q ss_pred CC-CCCCcccccccccccCCCCC
Q 014089 386 TA-PTLPDFALALKPDEFQLPPV 407 (431)
Q Consensus 386 ~l-p~l~~~~l~vkp~~~~lP~~ 407 (431)
+| ..+|.+.-+++|.||..|.+
T Consensus 391 ~L~~~~P~Gr~i~~~~~~~~p~~ 413 (413)
T cd09245 391 ELQSSMPSGREAHTAKPYTPPPS 413 (413)
T ss_pred hhhhcCCCcccccCCCCCCCCCC
Confidence 44 46776665599999998863
No 13
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=100.00 E-value=4.9e-49 Score=395.97 Aligned_cols=314 Identities=17% Similarity=0.133 Sum_probs=235.0
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~ 105 (431)
+.+| +|+|.+|||++||++||.++|.++.+.+++++..+. ++|+.++++.| + +..++.|.+||.+|..
T Consensus 2 i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~---------~-~sg~e~L~~YY~qL~~ 69 (385)
T cd09249 2 IPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLM-DLRQACRTPSR---------D-EAGVELLMSYFSQLGF 69 (385)
T ss_pred CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCC---------C-hhHHHHHHHHHHHHHH
Confidence 3456 999999999999999999999777666666665443 34444333321 1 2345679999999998
Q ss_pred cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089 106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI 183 (431)
Q Consensus 106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~ 183 (431)
+..+++.. ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+ + +++.+++|+|.||.+
T Consensus 70 Le~RFp~~~~~~~v~FtW~Dsf~~-~~~~q~sl~fEkasVLFNigAl-~Sqlaa----~------~~r~t~eGlK~A~~~ 137 (385)
T cd09249 70 LENRFFPPTRQMGILFTWYDSFTG-VPVSQQNLLLEKASILFNIGAL-YTQIGT----R------CNRQTQAGLESAVDA 137 (385)
T ss_pred HHhhCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHH-HHHHHH----H------hccCCchhHHHHHHH
Confidence 86665332 36789999999986 7899999999999999999955 699872 2 467899999999999
Q ss_pred HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHH-----HHHHHHHHHH
Q 014089 184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAV-----KRRLACEMVK 258 (431)
Q Consensus 184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sl-----IAKLA~q~s~ 258 (431)
||+|||||+||++++.+ .|+.||++++|.+|..|||||||||||+|++. +++++++ |||||.|+++
T Consensus 138 FQ~AAG~F~~L~e~~~~--------~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~-d~~k~~~~~i~kiAklAaqvs~ 208 (385)
T cd09249 138 FQRAAGVLNYLKETFTH--------TPSYDMSPAMLSVLVKMMLAQAQECLFEKISL-PGIRNEFFTLVKMAQEAAKVGE 208 (385)
T ss_pred HHHHHHHHHHHHHhccC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999643 23469999999999999999999999999998 6777887 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCc-----------cch-hH------
Q 014089 259 YWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPS-----------EKF-HG------ 317 (431)
Q Consensus 259 ~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~-----------~~k-~G------ 317 (431)
+|++|.+.++...... .++.+| .++++|+..| .|.++|+ ..+.+ .++ .|
T Consensus 209 ~Y~~a~~al~s~~~~~------~i~~~W~~~v~~K~~~f----~AlA~Y~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (385)
T cd09249 209 VYMQVHTAMNQAPVKE------NIPYSWSSLVQVKAHHY----NALAHYFVATLLIDHQLNPSDDEDKQEKALSQLYDHM 278 (385)
T ss_pred HHHHHHHHHhcccccc------cCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHHhc
Confidence 9999999998655421 367789 9999999766 3334554 54421 111 11
Q ss_pred ----------------H--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccC
Q 014089 318 ----------------M--AVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYS 379 (431)
Q Consensus 318 ----------------e--aIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~ 379 (431)
. .=++|+.|...-+||.+...- +.. ......+.+.++..+++-..++...++|-||-.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~k~hl~~a~~~~eea~r~~~~-c~~--l~~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~~- 354 (385)
T cd09249 279 PEGLTPLTILKNKQQRRLLGKAHLRRAIMHHEEAIREASL-CKK--LRNIDVLQEVLSAAHNRSLLKYAQHQKEDDFLD- 354 (385)
T ss_pred cccCChhhhhcccHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHhhccccchhh-
Confidence 1 116888888888888877331 100 000122556666667777778888999999887
Q ss_pred CCccCCC
Q 014089 380 YEKIMET 386 (431)
Q Consensus 380 hq~VP~~ 386 (431)
...-|+.
T Consensus 355 ~~~~~~~ 361 (385)
T cd09249 355 LIDAPDI 361 (385)
T ss_pred ccccCCc
Confidence 6644543
No 14
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=100.00 E-value=4.7e-45 Score=395.07 Aligned_cols=317 Identities=21% Similarity=0.248 Sum_probs=252.8
Q ss_pred EecCCCCCCcccccchHHhhHHHHHHHH----------HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE----------RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA 95 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~----------~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~ 95 (431)
+.+| +|.|.++||..||..||...|.+ ++.++|+++.... .+ . .....
T Consensus 6 ~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~----------------~~-~----~~~~~ 63 (714)
T KOG2220|consen 6 LPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVP----------------KP-S----EGLEV 63 (714)
T ss_pred cCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCC----------------cc-h----hhhHH
Confidence 6788 99999999999999999987743 4445555543221 11 1 22346
Q ss_pred HHHHHHHHhccccCCCCccccee-EeeeccCCCC-ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 014089 96 LEDYLPVLLGLVKDGSQLQYKVQ-FVWVNQEDEA-EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVS 173 (431)
Q Consensus 96 l~~Yl~~L~~l~~~~~~~~~~v~-F~W~ds~~~~-~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s 173 (431)
+.+||.+|+.+..+.+-....+. |+|+|+|+++ .++++.++.||++|||||||++ |+++|+. +++.+
T Consensus 64 l~~yy~qL~~l~~r~p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l-~s~iaa~----------~~~~~ 132 (714)
T KOG2220|consen 64 LKRYYGQLCYLESRFPMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAAL-YSQIAAH----------QSRET 132 (714)
T ss_pred HHHHHHHHHHHHHhcCcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHH-HHHHHHH----------hccCc
Confidence 88999999887655433334444 9999999877 8999999999999999999966 6888732 35678
Q ss_pred hHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHH
Q 014089 174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLA 253 (431)
Q Consensus 174 ~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA 253 (431)
.|++|.||.+||.|||||.|++++.+.. .+.+|++++++.++..+|+||||||||.+++. +++++++|+||+
T Consensus 133 ~d~~k~a~~~fq~aagaf~~l~~~~~~~-------~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~-d~~~~~~iaKis 204 (714)
T KOG2220|consen 133 VDGYKAAIAHFQAAAGAFRYLSRDALGV-------EPLVDLSSLTLVFLRFLMLAQAQECFFYKSLT-DNPKPSIIAKLS 204 (714)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcHHhcCc-------ccccccCHHHHHHHHHhhHHhhchheeehhhc-CCcchHHHHHHH
Confidence 9999999999999999999999443322 35579999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH-HhcCccchhHHHHHHHHHHHHHHH
Q 014089 254 CEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL-LLLPSEKFHGMAVAALQAADEYFK 331 (431)
Q Consensus 254 ~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~-~~l~~~~k~GeaIa~L~~A~~~l~ 331 (431)
.|++.||.+|+++++.... ..+...| .++..|.+.+.+|.. ||+ ....+.+++|++|++|+.+...++
T Consensus 205 ~q~~~fy~~Al~~~~~~~~-------~~~~~~w~~~~~~k~~~~~~v~~---~~~~~~~~e~~~~ge~i~~l~~~~~~l~ 274 (714)
T KOG2220|consen 205 AQVVLFYEEALKAQIGARA-------DRITKEWLTLVAAKFARFAGVAY---YYQSLFLHEKSKDGEAIARLQLSLLMLS 274 (714)
T ss_pred HHHHHHHHHHHHHHHHhhh-------cccchhHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999998211 1356689 788888766633321 455 888999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCcccccccccccCCCCC
Q 014089 332 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALKPDEFQLPPV 407 (431)
Q Consensus 332 ~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vkp~~~~lP~~ 407 (431)
+|.+..... ..++ ....+.++..+++++||||||| |++|| .++|+|+++.+ |+|.+++-|.+
T Consensus 275 ~Aqk~~~~~--------~~~~----~~~~~~~~~~lk~a~kdNdFIy-he~vp~~~~l~~~~~~~~-vkp~~~~~l~~ 338 (714)
T KOG2220|consen 275 EAQKCSFGE--------FTDV----IESLSSLEKALKEAKKDNDFIY-HERVPKVSELPPLKAAQL-VKPLPWAVLLP 338 (714)
T ss_pred HHHHhhccc--------chhH----hhhhhHHHHHHHhhhcccchhh-hcccccccccCCcchhHh-hcCCCcccccc
Confidence 999875431 1122 2333678899999999999999 99999 48999999999 99998885443
No 15
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=97.87 E-value=5.2e-05 Score=83.75 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=136.0
Q ss_pred CcEEEecCCCCCCcccccchHHhhHHHHHHH-HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHH
Q 014089 22 GEVSVYVPGLRIPKPVDFSQSLGDNLSKNMV-ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYL 100 (431)
Q Consensus 22 ~~~~~~~p~lk~~~~vd~~~~l~~~I~~~~~-~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl 100 (431)
..+.+...||+++..++.-.+|...|..++. ++-..+.+.+..+. ..+.+.+.++|+.+... .+++ .-..++
T Consensus 99 ~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq-~aagaf~~l~~~~~~~~--~~~d----~~~~~l 171 (714)
T KOG2220|consen 99 KKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQ-AAAGAFRYLSRDALGVE--PLVD----LSSLTL 171 (714)
T ss_pred cceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHHHHhhcHHhcCcc--cccc----cCHHHH
Confidence 4488889999999999999999999999998 77777777765554 56777788886544322 1222 122345
Q ss_pred HHHhccccCCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089 101 PVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180 (431)
Q Consensus 101 ~~L~~l~~~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A 180 (431)
..+..++... .-.+.| ++++.+ .+..+--..+++.+++||.+|+. .+.+ ++ .++.+.++++.+
T Consensus 172 ~~~~~l~~Aq---AQec~f--~ks~~d-~~~~~~iaKis~q~~~fy~~Al~-~~~~----~~------~~~~~~~w~~~~ 234 (714)
T KOG2220|consen 172 VFLRFLMLAQ---AQECFF--YKSLTD-NPKPSIIAKLSAQVVLFYEEALK-AQIG----AR------ADRITKEWLTLV 234 (714)
T ss_pred HHHHHhhHHh---hchhee--ehhhcC-CcchHHHHHHHHHHHHHHHHHHH-HHHH----hh------hcccchhHHHHH
Confidence 5555554221 124445 888776 44566667899999999999774 5544 12 367889999999
Q ss_pred HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHH
Q 014089 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLG 236 (431)
Q Consensus 181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~ 236 (431)
...|+.++|++.|....+....+ .|..+-.+-.+..+||+|||+|..+
T Consensus 235 ~~k~~~~~~v~~~~~~~~~~e~~--------~~ge~i~~l~~~~~~l~~Aqk~~~~ 282 (714)
T KOG2220|consen 235 AAKFARFAGVAYYYQSLFLHEKS--------KDGEAIARLQLSLLMLSEAQKCSFG 282 (714)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999865543 4899999999999999999999875
No 16
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.38 E-value=11 Score=29.94 Aligned_cols=29 Identities=17% Similarity=0.050 Sum_probs=25.2
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
..+...+++++||.+++.|.++|-++.+.
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aIe~L~q~~~~ 42 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAIEVLSQIVKN 42 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44577899999999999999999988765
No 17
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=56.65 E-value=5.6 Score=28.66 Aligned_cols=8 Identities=50% Similarity=0.800 Sum_probs=7.2
Q ss_pred CCcccccc
Q 014089 1 MGCFLSTS 8 (431)
Q Consensus 1 ~~~~~~~~ 8 (431)
|||+.|+.
T Consensus 1 mgcapsih 8 (52)
T PF08629_consen 1 MGCAPSIH 8 (52)
T ss_pred CCcCCcEe
Confidence 99999986
No 18
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.39 E-value=53 Score=26.07 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=24.3
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
..+...++|.+||.+++.|.+++..+.+.
T Consensus 14 ve~D~~g~y~eA~~~Y~~aie~l~~~~~~ 42 (76)
T cd02681 14 VQRDQEGRYSEAVFYYKEAAQLLIYAEMA 42 (76)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 44577899999999999999999877543
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.53 E-value=52 Score=37.90 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhh
Q 014089 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHV 198 (431)
Q Consensus 142 sVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~ 198 (431)
+|+||+| +.+.+.+..+- + .++-|-|.++.+..-+..|--+|+||+.+-
T Consensus 751 ~v~FN~a-~v~kkla~s~l-r------~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 751 SVKFNLA-LVLKKLAESIL-R------LEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHhHHH-HHHHHHHHHHH-h------cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3899999 55677764332 2 255677889999999999999999998874
No 20
>PF15506 OCC1: OCC1 family
Probab=42.26 E-value=24 Score=26.23 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=9.0
Q ss_pred CCcccccccCCC
Q 014089 1 MGCFLSTSKDTG 12 (431)
Q Consensus 1 ~~~~~~~~~~~~ 12 (431)
|||+-|+--..|
T Consensus 1 MGCGNSTA~sa~ 12 (62)
T PF15506_consen 1 MGCGNSTATSAG 12 (62)
T ss_pred CCcccccccccc
Confidence 999999874443
No 21
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.35 E-value=58 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=24.7
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
..+...++|.+||.+++.|.+.+..+.+.
T Consensus 14 ve~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 14 VELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999988765
No 22
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.83 E-value=56 Score=20.53 Aligned_cols=22 Identities=18% Similarity=-0.226 Sum_probs=15.0
Q ss_pred HhcCccchhHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEY 329 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~ 329 (431)
......+++.+||.+++.|.++
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHH
Confidence 3345677888888888887654
No 23
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=30.72 E-value=20 Score=18.47 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHH
Q 014089 180 SVDIFLKAAGYL 191 (431)
Q Consensus 180 A~~~fq~AAG~F 191 (431)
|.+++++||-||
T Consensus 1 A~~~y~~Aa~~y 12 (12)
T PF02071_consen 1 AIKCYEKAAECY 12 (12)
T ss_pred CcHHHHHHHhhC
Confidence 356778887765
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=29.03 E-value=1.9e+02 Score=21.70 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHHH
Q 014089 137 WYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (431)
Q Consensus 137 ~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F~ 192 (431)
..+.+.+++|+|.++ ...+ ..++|..+|++|--+|+
T Consensus 42 ~~~~a~~~~~lg~~~-~~~g-------------------~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 42 HPDTANTLNNLGECY-YRLG-------------------DYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHH-HHTT-------------------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHcC-------------------CHHHHHHHHHHHHhhhc
Confidence 456799999999554 3221 37899999999987774
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.35 E-value=8e+02 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHH
Q 014089 177 RRASVDIFLKAAGYL 191 (431)
Q Consensus 177 lK~A~~~fq~AAG~F 191 (431)
+.+|..+|.+--||+
T Consensus 540 ldeald~f~klh~il 554 (840)
T KOG2003|consen 540 LDEALDCFLKLHAIL 554 (840)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888876665
No 26
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.09 E-value=72 Score=19.74 Aligned_cols=22 Identities=14% Similarity=-0.135 Sum_probs=14.7
Q ss_pred HhcCccchhHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEY 329 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~ 329 (431)
......+++.+|+.+++.|.++
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3445677888888888877654
No 27
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.88 E-value=2.1e+02 Score=21.53 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=24.7
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
....+.++|.+||.+++.|.+.+..+.+.
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 34467899999999999999999988775
No 28
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=24.87 E-value=1.4e+02 Score=18.70 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHh
Q 014089 176 SRRASVDIFLKAAG 189 (431)
Q Consensus 176 glK~A~~~fq~AAG 189 (431)
..+.|+.+|++||-
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 47899999999984
No 29
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=24.47 E-value=1.5e+02 Score=21.42 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 014089 45 DNLSKNMVERLSALRTR 61 (431)
Q Consensus 45 ~~I~~~~~~~l~~lR~~ 61 (431)
+.+...+.++|+++|++
T Consensus 8 ~~~t~efgdDLd~lR~~ 24 (47)
T PF14615_consen 8 QRLTDEFGDDLDELRKA 24 (47)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34556788999999955
No 30
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.47 E-value=2.9e+02 Score=22.13 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=36.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhh
Q 014089 311 PSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSK 370 (431)
Q Consensus 311 ~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a 370 (431)
.+.+.--.||.+|+.|...+.++...-- |....-+.|+....+.+++...+...
T Consensus 19 dE~g~~e~Al~~Y~~gi~~l~eg~ai~~------~~~~~~~~w~~ar~~~~Km~~~~~~v 72 (79)
T cd02679 19 DEWGDKEQALAHYRKGLRELEEGIAVPV------PSAGVGSQWERARRLQQKMKTNLNMV 72 (79)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHcCCCC------CcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5567777899999999999998864411 11223446777777777776555443
No 31
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.41 E-value=4.6e+02 Score=25.52 Aligned_cols=110 Identities=16% Similarity=0.055 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCC
Q 014089 133 ISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPV 212 (431)
Q Consensus 133 ~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~ 212 (431)
..+..-|++-++||+|-..++ + + +....|+..|++|--+++-..+. .... ....
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~--------~-------~----~~~~~a~~wL~~a~~~l~~~~~~--~~~~-----~~~~ 80 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLS--------K-------K----DKYEEAVKWLQRAYDILEKPGKM--DKLS-----PDGS 80 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHH--------c-------C----CChHHHHHHHHHHHHHHHhhhhc--cccC-----CcHH
Confidence 345567999999999944321 1 1 24789999999986665442111 0111 1112
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHHHhH------hhcccchHHHHHHHHHHHHH---HHHHHHHHh
Q 014089 213 DLAEGDLRALCLQALGQGVDIQLGMAI------DSTKATLAVKRRLACEMVKY---WQQAQDNIM 268 (431)
Q Consensus 213 DL~~~~L~aL~~lmLAQAQE~~~~KAi------~~~k~k~slIAKLA~q~s~~---Y~~A~~~l~ 268 (431)
.+.-.+|.+|....|.--.+-.+.||+ +++-.....+.-|+.++-.- ++++.+.+.
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 445566666655555422222334432 22222333455566666555 444444443
No 32
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.79 E-value=2.7e+02 Score=21.54 Aligned_cols=29 Identities=24% Similarity=0.098 Sum_probs=23.7
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
......++|-+|+.++..|.+.+..+.+.
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie~l~~~~k~ 42 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALEYFMHALKY 42 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34467889999999999999998877654
No 33
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=20.72 E-value=2.4e+02 Score=17.94 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHh
Q 014089 176 SRRASVDIFLKAAG 189 (431)
Q Consensus 176 glK~A~~~fq~AAG 189 (431)
+.+.|..+|++||-
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 48999999999984
No 34
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.30 E-value=2.7e+02 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=22.8
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
...+.+++-+|+.+++.|.+.+..+.+.
T Consensus 17 ~~d~~g~~~eAl~~Y~~a~e~l~~~~~~ 44 (77)
T smart00745 17 KADEAGDYEEALELYKKAIEYLLEGIKV 44 (77)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788999999999999998887653
Done!