Query 014089
Match_columns 431
No_of_seqs 166 out of 445
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9m_A BRO1 domain-containing 100.0 2.1E-68 7.3E-73 543.7 34.8 346 29-416 11-372 (376)
2 3c3r_A Programmed cell death 6 100.0 6.8E-65 2.3E-69 518.6 31.5 323 25-412 25-373 (380)
3 3rau_A Tyrosine-protein phosph 100.0 8.1E-65 2.8E-69 514.9 26.3 320 26-404 11-348 (363)
4 2xs1_A Programmed cell death 6 100.0 1.2E-59 4.1E-64 513.6 29.5 323 25-412 10-358 (704)
5 1zb1_A BRO1 protein; AIP1, BRO 100.0 1.7E-60 5.7E-65 488.3 20.5 315 25-403 10-350 (392)
6 2crb_A Nuclear receptor bindin 53.8 8.3 0.00028 30.8 2.8 29 308-336 23-51 (97)
7 2w2u_A Hypothetical P60 katani 46.7 26 0.00088 27.1 4.6 28 309-336 28-55 (83)
8 3rkv_A Putative peptidylprolyl 38.9 1.5E+02 0.0052 23.8 12.3 39 137-195 7-45 (162)
9 4a5x_A MITD1, MIT domain-conta 38.3 53 0.0018 25.4 5.3 28 309-336 25-52 (86)
10 2v6y_A AAA family ATPase, P60 35.6 51 0.0017 25.3 4.7 54 309-375 20-73 (83)
11 2cpt_A SKD1 protein, vacuolar 34.1 48 0.0016 27.3 4.6 28 309-336 27-54 (117)
12 1wfd_A Hypothetical protein 15 33.6 67 0.0023 25.1 5.3 29 308-336 23-51 (93)
13 4gcn_A Protein STI-1; structur 31.5 1.8E+02 0.0063 22.6 10.4 35 134-188 1-35 (127)
14 2v6x_A Vacuolar protein sortin 28.6 97 0.0033 23.5 5.3 28 309-336 22-49 (85)
15 3q15_A PSP28, response regulat 26.4 3.9E+02 0.013 24.7 12.0 35 137-191 137-171 (378)
16 3vtx_A MAMA; tetratricopeptide 24.8 2.7E+02 0.0093 22.4 10.5 30 139-188 3-32 (184)
17 3n71_A Histone lysine methyltr 23.3 2.6E+02 0.0088 28.3 8.9 37 137-193 389-425 (490)
18 3gyz_A Chaperone protein IPGC; 20.4 3.6E+02 0.012 22.1 9.1 57 213-269 30-95 (151)
No 1
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=100.00 E-value=2.1e-68 Score=543.71 Aligned_cols=346 Identities=21% Similarity=0.359 Sum_probs=291.9
Q ss_pred CCCCCCcccccchHH--hhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcc
Q 014089 29 PGLRIPKPVDFSQSL--GDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGL 106 (431)
Q Consensus 29 p~lk~~~~vd~~~~l--~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l 106 (431)
| ||.|..|+|...+ ++-.+.+.+.+++.+|+++++.. .++ ..+.+.++++|.+||++|.+|
T Consensus 11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~---------------~~~-~~~~~~~~~~l~~Yl~~L~~l 73 (376)
T 3r9m_A 11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF---------------TDL-SCNPEMMKNAADSYFSLLQGF 73 (376)
T ss_dssp C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT---------------TCT-TCCHHHHHHHHHHHHHHHGGG
T ss_pred C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH---------------hcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 5 9999999987644 34556788999999999999887 666 556788889999999999998
Q ss_pred ccCC------CCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089 107 VKDG------SQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180 (431)
Q Consensus 107 ~~~~------~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A 180 (431)
..+. ..++.+|.|+|+|+|+++.+++++|+.||++||||||||+ |+++|+.+.. .++.++||+|.|
T Consensus 74 ~~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal-~sq~A~~~~~-------~~r~~~e~lK~A 145 (376)
T 3r9m_A 74 INSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALW-YTKYASRLAG-------KENITEDEAKEV 145 (376)
T ss_dssp TBCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHH-HHHHHHHHHT-------CTTCCHHHHHHH
T ss_pred HhccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHH-HHHHHHHhhc-------cccCChHHHHHH
Confidence 7542 2344789999999999778999999999999999999965 6888755532 256889999999
Q ss_pred HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHH
Q 014089 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW 260 (431)
Q Consensus 181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y 260 (431)
|++||+|||||+||++++++.+.+ ...+++||++++|++|+.+||||||||+|+||+. +++++++|||||+|++++|
T Consensus 146 ~~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAKLa~q~~~~Y 222 (376)
T 3r9m_A 146 HRSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFY 222 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHH
Confidence 999999999999999999887632 2346789999999999999999999999999999 7889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089 261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKAC 337 (431)
Q Consensus 261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~ 337 (431)
++|.+.+++... .++.+| +++++|+..| .+.+ ||+ +.+.++++||++|+||+.|.+.++++.+.+
T Consensus 223 ~~a~~~l~~~~~--------~i~~~W~~~v~~K~~~~----~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~ 290 (376)
T 3r9m_A 223 QKADHTLSSLEP--------AYSAKWRKYLHLKMCFY----TAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALC 290 (376)
T ss_dssp HHHHHHHTTSCH--------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986432 477889 9999997555 3333 555 888899999999999999999999999999
Q ss_pred hhcccCCC--CCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCCCCCC---CcccccccccccCCCCCCCCCC
Q 014089 338 EAFNVAPP--LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWT 412 (431)
Q Consensus 338 ~~~~~~~p--~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~lp~l---~~~~l~vkp~~~~lP~~~~~w~ 412 (431)
+.|....+ .+..++....++.+.+.|++.+++++||||||| ||+||+++|.+ |+++| |+|+||++|+++|.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY-~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~ 368 (376)
T 3r9m_A 291 KEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY-FQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWT 368 (376)
T ss_dssp HHHHTCCCSSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCC
T ss_pred HHhccccCCccccccchhhHHHHHHHHHHHHHHHHHhhcccee-cccCCCCCCCcccccccce-ecCcCCCCCCCChhhh
Confidence 99886542 333343223477788899999999999999999 99999987776 57889 9999999999999999
Q ss_pred Cccc
Q 014089 413 DENM 416 (431)
Q Consensus 413 ~~~~ 416 (431)
++.+
T Consensus 369 ~~~~ 372 (376)
T 3r9m_A 369 PETL 372 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 2
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=6.8e-65 Score=518.57 Aligned_cols=323 Identities=21% Similarity=0.232 Sum_probs=270.5
Q ss_pred EEecCCCCCCcccccchHHhhHHHHHH-------------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089 25 SVYVPGLRIPKPVDFSQSLGDNLSKNM-------------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD 91 (431)
Q Consensus 25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~-------------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~ 91 (431)
.+.+| ||+|.+|||.++|++||.++| +++|+.+|++++... .+ .+ +.
T Consensus 25 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~---------------~~---~~-~~ 84 (380)
T 3c3r_A 25 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP---------------LD---KH-EG 84 (380)
T ss_dssp CCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSS---------------CC---CS-HH
T ss_pred ccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcC---------------CC---cC-hH
Confidence 45566 999999999999999999885 468889999876532 11 11 23
Q ss_pred HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC------CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014089 92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRT 163 (431)
Q Consensus 92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~------~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~ 163 (431)
..+.|.+||++|..+..+.+. .+.+|.|+|+|+|+ ++.+++++|++||++|||||+|++ ||+.|. .
T Consensus 85 ~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal-~s~~A~----~- 158 (380)
T 3c3r_A 85 ALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQIAA----E- 158 (380)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHH-HHHHHH----T-
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHHHH----H-
Confidence 456799999999988655422 24789999999996 346889999999999999999966 688762 2
Q ss_pred CCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc
Q 014089 164 SADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK 243 (431)
Q Consensus 164 ~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k 243 (431)
++|.++||+|.||++||+|||||+||++++++.++. .+++||++++|.+|+.+||||||||+|+||+. ++
T Consensus 159 -----~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~ 228 (380)
T 3c3r_A 159 -----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DK 228 (380)
T ss_dssp -----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred -----hcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 477899999999999999999999999999876543 46789999999999999999999999999999 67
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089 244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV 320 (431)
Q Consensus 244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI 320 (431)
+++++|||||+|++++|++|.+.++..+ .+...| +++++|+..| .+.+ ||+ +.+.++++||++|
T Consensus 229 ~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI 295 (380)
T 3c3r_A 229 MKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIM----QANAEYHQSILAKQQKKFGEEI 295 (380)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCC---------CSCTTHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence 8899999999999999999999998322 245678 7888877555 3333 555 8888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCccccccc
Q 014089 321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALK 398 (431)
Q Consensus 321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vk 398 (431)
+||+.|.++++++.+.++.+.. ++.+.++|++.+++++||||||| ||+|| ++||+|+++.| ||
T Consensus 296 a~L~~A~~~l~~a~~~~~~~~~-------------l~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~Lp~i~~~~l-vk 360 (380)
T 3c3r_A 296 ARLQHAAELIKTVASRYDEYVN-------------VKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VK 360 (380)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCC-------------CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CC
T ss_pred HHHHHHHHHHHHHHHHhcchHh-------------HHHHHHHHHHHHHHHHHhhCeec-ccCCCCcccCCCCCCCce-ec
Confidence 9999999999999988765432 45677789999999999999999 99999 48999999999 99
Q ss_pred ccccCCCCCCCCCC
Q 014089 399 PDEFQLPPVHPSWT 412 (431)
Q Consensus 399 p~~~~lP~~~~~w~ 412 (431)
|+||++|. ++.|+
T Consensus 361 ~~~~~~p~-~~~~~ 373 (380)
T 3c3r_A 361 STPVNVPI-SQKFT 373 (380)
T ss_dssp CCCCCSCC-SSSCC
T ss_pred ccCCCCCC-ccchh
Confidence 99999988 88886
No 3
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-65 Score=514.86 Aligned_cols=320 Identities=20% Similarity=0.219 Sum_probs=263.2
Q ss_pred EecCCCCCCcccccchHHhhHHHHHH----------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089 26 VYVPGLRIPKPVDFSQSLGDNLSKNM----------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA 95 (431)
Q Consensus 26 ~~~p~lk~~~~vd~~~~l~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~ 95 (431)
+...|||+|++|||.+||++||.++| +++|+.||++++... .+. ...+.
T Consensus 11 mi~l~lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~~~~~~~--------------------~~~-~g~~~ 69 (363)
T 3rau_A 11 MIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVP--------------------RDF-EGCSV 69 (363)
T ss_dssp CCCCCCCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHTCC--------------------SSH-HHHHH
T ss_pred ccCCCCCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCC--------------------CCH-HHHHH
Confidence 34445999999999999999999987 446777777654321 121 23467
Q ss_pred HHHHHHHHhccccCCCC---cccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 014089 96 LEDYLPVLLGLVKDGSQ---LQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKV 172 (431)
Q Consensus 96 l~~Yl~~L~~l~~~~~~---~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~ 172 (431)
|.+||.+|..+..+++. ...+|.|+|+|+|++ ++++++|++||++||||||||+ ||++|+. ++|.
T Consensus 70 L~~Yy~qL~~l~~rfp~~~~~~~~i~F~W~ds~~~-~~~~~~sl~fE~a~VLfNiaal-~s~~a~~----------~~r~ 137 (363)
T 3rau_A 70 LRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGAL-HSMLGAM----------DKRV 137 (363)
T ss_dssp HHHHHHHHHHHHHHSCCSTTCTTCCCEEEECTTTC-CEEEESCHHHHHHHHHHHHHHH-HHHHHHH----------SCCC
T ss_pred HHHHHHHHHHHHhcCCCCcccccceeEEeecccCC-ccccccCHHHHHHHHHHHHHHH-HHHHHHH----------hccC
Confidence 99999999887544322 135899999999987 5899999999999999999966 6888732 4778
Q ss_pred ChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHH
Q 014089 173 SEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRL 252 (431)
Q Consensus 173 s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKL 252 (431)
++||+|.||++||+|||||+||++++.+. +++||++++|.+|+.+||||||||+|+||+. +++++++||||
T Consensus 138 ~~~glK~A~~~fq~AAG~f~~l~~~~~~~--------~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkL 208 (363)
T 3rau_A 138 SEEGMKVSCTHFQCAAGAFAYLREHFPQA--------YSVDMSRQILTLNVNLMLGQAQECLLEKSML-DNRKSFLVARI 208 (363)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCCSC--------SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHH
Confidence 99999999999999999999999998532 4569999999999999999999999999999 66789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHH
Q 014089 253 ACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEY 329 (431)
Q Consensus 253 A~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~ 329 (431)
|+|++++|++|++.+++.+....+ -.++.+| +++++|+..| .+.+ ||+ +.+.+.++||++|+||+.|.+.
T Consensus 209 a~q~~~~Y~~a~~~l~~~~~~~~~---~~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 281 (363)
T 3rau_A 209 SAQVVDYYKEACRALENPDTASLL---GRIQKDWKKLVQMKIYYF----AAVAHLHMGKQAEEQQKFGERVAYFQSALDK 281 (363)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHH---TTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccc---ccccHHHHHHHHHHHHHH----HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999865421100 0256688 8888887555 3333 455 7888999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089 330 FKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL 404 (431)
Q Consensus 330 l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l 404 (431)
++++.+.++.+ ...+.+.++.+.++|++.+++++||||||| ||+||+ +||+|++..| |||+||+.
T Consensus 282 l~~a~~~~k~~--------~~~~~~~~~~~~~~i~~~l~~aekdNd~IY-~~~VP~~~~L~~i~~~~l-vk~~p~~~ 348 (363)
T 3rau_A 282 LNEAIKLAKGQ--------PDTVQDALRFTMDVIGGKYNSAKKDNDFIY-HEAVPALDTLQPVKGAPL-VKPLPVNP 348 (363)
T ss_dssp HHHHHHHTTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred HHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHHhccCcCC-cccCCCccccCCCCCCcc-ccCCCCCc
Confidence 99999987631 223666778888999999999999999999 999996 8999999999 99998884
No 4
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=1.2e-59 Score=513.61 Aligned_cols=323 Identities=21% Similarity=0.234 Sum_probs=264.8
Q ss_pred EEecCCCCCCcccccchHHhhHHHHHHH---H----------HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV---E----------RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD 91 (431)
Q Consensus 25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~---~----------~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~ 91 (431)
.+.+| ||.|.+|||..||++||.++|. + +|+.+|++++... . ... +.
T Consensus 10 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~-----------------~-~~~-~~ 69 (704)
T 2xs1_A 10 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP-----------------L-DKH-EG 69 (704)
T ss_dssp CCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSC-----------------C-CCC-HH
T ss_pred hhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCC-----------------C-CCC-HH
Confidence 56677 9999999999999999998865 4 5555665554321 1 112 23
Q ss_pred HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC------CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014089 92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRT 163 (431)
Q Consensus 92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~------~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~ 163 (431)
..+.|.+||++|..+..+.+. .+.+|.|+|+|+|+ ++.+++++|++||++|||||+||+ ||++|. .
T Consensus 70 ~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~A~----~- 143 (704)
T 2xs1_A 70 ALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQIAA----E- 143 (704)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHH-HHHHHH----T-
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHHHH----H-
Confidence 457799999999988655432 24689999999996 336889999999999999999965 688763 2
Q ss_pred CCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc
Q 014089 164 SADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK 243 (431)
Q Consensus 164 ~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k 243 (431)
+++.+++|+|.||++||+|||||+||+++++|.++. .+++||++++|.+|+.+||||||||+|+||+. ++
T Consensus 144 -----~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~ 213 (704)
T 2xs1_A 144 -----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DK 213 (704)
T ss_dssp -----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred -----hCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 477899999999999999999999999999876543 46789999999999999999999999999999 67
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089 244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV 320 (431)
Q Consensus 244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI 320 (431)
+++++|||||+|++++|++|.+.+...+ .+..+| +++++|+..| .|.| ||+ +++.+.++||++|
T Consensus 214 ~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI 280 (704)
T 2xs1_A 214 MKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIM----QANAEYHQSILAKQQYYFGEEI 280 (704)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCC---------CSCTTHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHhHHHHHH
Confidence 8999999999999999999999998221 245578 7777777544 3333 555 8888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCccccccc
Q 014089 321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALK 398 (431)
Q Consensus 321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vk 398 (431)
+||+.|.++++++.+.++.+. . ++.+.++|++.+++++||||||| ||+||+ +||+|+++.| ||
T Consensus 281 a~L~~A~~~l~~a~~~~~~~~---------~----~~~l~~~i~~~l~~~~kdNd~IY-~e~VP~~~~L~~i~~~~l-vk 345 (704)
T 2xs1_A 281 ARLQHAAELIKTVASRYDEYV---------N----VKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VK 345 (704)
T ss_dssp HHHHHHHHHHHHHHHHSTTTC---------C----CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CC
T ss_pred HHHHHHHHHHHHHHHHhcchH---------h----HHHHHHHHHHHHHHHHHhhCeee-ccCCCCccccCCccCccc-cc
Confidence 999999999999998765432 1 45677789999999999999999 999996 8999999999 99
Q ss_pred ccccCCCCCCCCCC
Q 014089 399 PDEFQLPPVHPSWT 412 (431)
Q Consensus 399 p~~~~lP~~~~~w~ 412 (431)
|+||+.|. ++.|+
T Consensus 346 ~~~~~~p~-~~~~~ 358 (704)
T 2xs1_A 346 STPVNVPI-SQKFT 358 (704)
T ss_dssp CCCCCSCC-STTCC
T ss_pred cCCCCccc-ccchh
Confidence 99999875 67775
No 5
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-60 Score=488.27 Aligned_cols=315 Identities=16% Similarity=0.163 Sum_probs=255.9
Q ss_pred EEecCCCCCCcccccchHHhhHHHHHHH------------H-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV------------E-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD 91 (431)
Q Consensus 25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~------------~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~ 91 (431)
.+.+| ||+|.+|||..||++||.++|. . +|+.+|++++.. .. -+.
T Consensus 10 ~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~--------------------~~-~~~ 67 (392)
T 1zb1_A 10 LFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGE--------------------LA-PSS 67 (392)
T ss_dssp CCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSS--------------------CC-HHH
T ss_pred cccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcC--------------------CC-ChH
Confidence 45677 9999999999999999998774 4 666777764321 11 145
Q ss_pred HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC----CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 014089 92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED----EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA 165 (431)
Q Consensus 92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~----~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~ 165 (431)
+++.|.+||++|.++..+.+. .+.+|.|+|+|+|+ ++.+++++|++||++|||||+||+ ||++|+.
T Consensus 68 ~~~~l~~Y~~~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~A~~------- 139 (392)
T 1zb1_A 68 LSEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVI-FTQIARE------- 139 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHH-HHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHH-HHHHHHH-------
Confidence 678899999999998544221 24789999999996 558899999999999999999955 6887732
Q ss_pred CCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhh--cc
Q 014089 166 DGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS--TK 243 (431)
Q Consensus 166 ~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~--~k 243 (431)
++|. |+|.||++||+|||||+||++++++. +++||++++|.+|+.+||||||||+|+||+.+ ++
T Consensus 140 ---~~r~---~lk~A~~~fq~AAG~f~~l~~~~~~~--------~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~ 205 (392)
T 1zb1_A 140 ---NINE---DYKNSIANLTKAFSCFEYLSENFLNS--------PSVDLQSENTRFLANICHAEAQELFVLKLLNDQISS 205 (392)
T ss_dssp ---TTTS---SSHHHHHHHHHHHHHHHHHHHHCCCC--------SSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGG
T ss_pred ---hchH---HHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 2333 79999999999999999999999753 35699999999999999999999999999984 47
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089 244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV 320 (431)
Q Consensus 244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI 320 (431)
+++++|||||+|++++|++|.+.+++.+.. . +..+..+| +++++|+..| .|.+ ||+ ..+.++++||++|
T Consensus 206 ~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~--~--~~~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI 277 (392)
T 1zb1_A 206 KQYTLISKLSRATCNLFQKCHDFMKEIDDD--V--AIYGEPKWKTTVTCKLHFY----KSLSAYYHGLHLEEENRVGEAI 277 (392)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHSCCCT--T--TSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccc--c--cccccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccchHHHH
Confidence 899999999999999999999999977531 0 11356678 8888887554 3333 555 8888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCccccccc
Q 014089 321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALK 398 (431)
Q Consensus 321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vk 398 (431)
+||+.|.+.++++.+.++.+. +.+ .++.+.++|++.+++++||||||| ||+||+ +||+|++..+ ||
T Consensus 278 a~L~~A~~~l~~a~~~~~~~~--------~~~--d~~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~i~~~~~-vk 345 (392)
T 1zb1_A 278 AFLDFSMQQLISSLPFKTWLV--------EFI--DFDGFKETLEKKQKELIKDNDFIY-HESVPAVVQVDSIKALDA-IK 345 (392)
T ss_dssp HHHHHHHHHHHHHGGGCTTTT--------TTS--CHHHHHHHHHHHHHHHHHHHHSSS-CCCCCSSCCGGGSCCCCC-CC
T ss_pred HHHHHHHHHHHHHHHhhhccc--------hHH--HHHHHHHHHHHHHHHHHHHhCccC-cCCCCCccccccCCCcCc-cc
Confidence 999999999999987754211 111 255888899999999999999999 999994 7999999999 99
Q ss_pred ccccC
Q 014089 399 PDEFQ 403 (431)
Q Consensus 399 p~~~~ 403 (431)
|+|++
T Consensus 346 ~~~~~ 350 (392)
T 1zb1_A 346 SPTWE 350 (392)
T ss_dssp CCCHH
T ss_pred ccCCc
Confidence 99776
No 6
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.78 E-value=8.3 Score=30.78 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.9
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
..+....+|++||.|.+.|..+|.+|.+.
T Consensus 23 e~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 23 DRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45578899999999999999999999875
No 7
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.70 E-value=26 Score=27.10 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=24.5
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
.....++|.+|+.+++.|.+.+..+.+.
T Consensus 28 e~D~~g~y~eAl~lY~~aie~l~~alk~ 55 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIEVLAQLVSL 55 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999988765
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=38.88 E-value=1.5e+02 Score=23.78 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHHHHHH
Q 014089 137 WYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAV 195 (431)
Q Consensus 137 ~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~ 195 (431)
.++.+..+.+.|..++ +.+ ....|..+|++|.-++....
T Consensus 7 ~~~~a~~~~~~G~~~~-~~~-------------------~~~~A~~~y~~al~~~~~~~ 45 (162)
T 3rkv_A 7 KLKSVEALRQKGNELF-VQK-------------------DYKEAIDAYRDALTRLDTLI 45 (162)
T ss_dssp -CHHHHHHHHHHHHHH-HTT-------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HcC-------------------CHHHHHHHHHHHHHHHHHhc
Confidence 4577888888885543 211 26899999999988876653
No 9
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.28 E-value=53 Score=25.43 Aligned_cols=28 Identities=21% Similarity=0.092 Sum_probs=23.6
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
.....++|.+|+.+++.|.+++..+.+.
T Consensus 25 e~D~~g~y~eAl~lY~~Aie~ll~alk~ 52 (86)
T 4a5x_A 25 ELDSESRYPQALVCYQEGIDLLLQVLKG 52 (86)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3467889999999999999999887753
No 10
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.56 E-value=51 Score=25.28 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=36.3
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccc
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINR 375 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd 375 (431)
.....++|.+|+.+++.|.+.+..+.+.-. .+... +.+..++.+-++|++.--.
T Consensus 20 e~D~~g~y~eAl~lY~~aie~l~~~lk~e~----------d~~~k---~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 20 KADKEGKVEDAITYYKKAIEVLSQIIVLYP----------ESVAR---TAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHCT----------TCTTH---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHCC----------CHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999998876521 11122 2344566666677666443
No 11
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.07 E-value=48 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.039 Sum_probs=23.3
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
.....++|-+||.+++.|.++|..+.+.
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l~~alk~ 54 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYFLHVVKY 54 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999888764
No 12
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.64 E-value=67 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.1
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
......++|.+|+.+++.|.+++..+.+.
T Consensus 23 ve~D~~g~y~eAl~~Y~~Aie~l~~alk~ 51 (93)
T 1wfd_A 23 VELDAESRYQQALVCYQEGIDMLLQVLKG 51 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33466789999999999999999988764
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=31.54 E-value=1.8e+02 Score=22.59 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHH
Q 014089 134 SNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAA 188 (431)
Q Consensus 134 ~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AA 188 (431)
++...|.+-...|+|-.++.+ ....+|..+|++|-
T Consensus 1 sn~~~d~A~a~~~lG~~~~~~--------------------~~~~~A~~~y~~Al 35 (127)
T 4gcn_A 1 SNAMTDAAIAEKDLGNAAYKQ--------------------KDFEKAHVHYDKAI 35 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHH
Confidence 355678888999999665422 12689999999984
No 14
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.55 E-value=97 Score=23.52 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=23.7
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 309 LLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 309 ~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
.....++|.+|+..++.|.+++..+.+.
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie~l~~a~k~ 49 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLDYLMLALKY 49 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999988764
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=26.38 E-value=3.9e+02 Score=24.73 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHH
Q 014089 137 WYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYL 191 (431)
Q Consensus 137 ~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F 191 (431)
..+.+.+++|+|.+ |...+ ....|..+|++|.-+|
T Consensus 137 ~~~~a~~~~~lg~~-y~~~~-------------------~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 137 DIEKAEFHFKVAEA-YYHMK-------------------QTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHHHHHHH-HHHTT-------------------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHcC-------------------CcHHHHHHHHHHHHHH
Confidence 35778888888844 33321 1578888888887777
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=24.80 E-value=2.7e+02 Score=22.38 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHH
Q 014089 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAA 188 (431)
Q Consensus 139 EkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AA 188 (431)
|-..|.+|+|.++ .+.+ ...+|..+|++|-
T Consensus 3 e~~~iy~~lG~~~-~~~g-------------------~~~~A~~~~~~al 32 (184)
T 3vtx_A 3 ETTTIYMDIGDKK-RTKG-------------------DFDGAIRAYKKVL 32 (184)
T ss_dssp -CHHHHHHHHHHH-HHHT-------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHcC-------------------CHHHHHHHHHHHH
Confidence 5578999999654 3322 2678999988874
No 17
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=23.26 E-value=2.6e+02 Score=28.35 Aligned_cols=37 Identities=8% Similarity=-0.057 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHHhHHHH
Q 014089 137 WYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC 193 (431)
Q Consensus 137 ~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AAG~F~~ 193 (431)
+-+.+..++|+|.+++.+ + ..++|..+|++|-.+++-
T Consensus 389 Hp~~a~~l~nLa~~~~~~-G-------------------~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHA-G-------------------HIEVGHGMICKAYAILLV 425 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHHHHH
Confidence 346788999999665322 1 168999999999999843
No 18
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=20.37 E-value=3.6e+02 Score=22.06 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhHHHH-------HHHHHHhHhhcccchHHHHHH--HHHHHHHHHHHHHHHhc
Q 014089 213 DLAEGDLRALCLQALGQGV-------DIQLGMAIDSTKATLAVKRRL--ACEMVKYWQQAQDNIMN 269 (431)
Q Consensus 213 DL~~~~L~aL~~lmLAQAQ-------E~~~~KAi~~~k~k~slIAKL--A~q~s~~Y~~A~~~l~~ 269 (431)
.++|+...++..+..+--+ +-.+.+++.-+.........| +.....-|++|...++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 6788888777666544322 123567766332223332222 22233456667666653
Done!