Query 014089
Match_columns 431
No_of_seqs 166 out of 445
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 05:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crba1 a.7.16.1 (A:8-90) Nucl 37.3 11 0.00084 27.4 3.0 29 308-336 16-44 (83)
2 d1wfda_ a.7.14.1 (A:) Hypothet 29.9 27 0.0019 25.6 4.2 57 308-377 23-79 (93)
3 d1wr0a1 a.7.14.1 (A:5-81) Vacu 21.8 39 0.0028 23.6 3.6 57 308-376 19-75 (77)
4 d1kt1a1 a.118.8.1 (A:254-421) 16.2 1.4E+02 0.011 22.6 6.6 17 254-270 32-48 (168)
5 d1p5qa1 a.118.8.1 (A:258-427) 12.1 2E+02 0.014 21.9 6.3 17 311-327 107-123 (170)
6 d2fe0a1 b.134.1.1 (A:1-131) Sm 11.7 69 0.0051 25.0 3.0 8 1-8 1-8 (131)
7 d1nzna_ a.118.8.1 (A:) Mitocho 11.6 1.1E+02 0.0079 22.5 4.2 29 139-187 70-98 (122)
8 d1zu2a1 a.118.8.1 (A:1-145) Mi 11.1 2.9E+02 0.021 20.3 7.9 10 142-151 32-41 (145)
9 d1pnoa_ c.31.1.4 (A:) Transhyd 9.0 1E+02 0.0075 25.2 3.2 102 314-425 30-153 (180)
10 d1hh8a_ a.118.8.1 (A:) Neutrop 9.0 1.1E+02 0.0081 24.1 3.5 26 143-188 38-63 (192)
No 1
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.32 E-value=11 Score=27.37 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.6
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKA 336 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~ 336 (431)
..+....+|-|||.|.+.|..++.+|.+.
T Consensus 16 er~l~~~rydeAIech~kA~~yl~eA~kl 44 (83)
T d2crba1 16 DRLLAAGKYEEAISCHRKATTYLSEAMKL 44 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999874
No 2
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.93 E-value=27 Score=25.57 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=36.6
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccc
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDL 377 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~I 377 (431)
..+.+.++|-+|+-+|+.|.++|..+.+.- + .+.. -+.+..++.+-++||+.-.++|
T Consensus 23 v~~D~~g~y~eA~~~Y~~aie~l~~~~~~e-------~---~~~~---k~~l~~k~~eYl~RAE~LK~~l 79 (93)
T d1wfda_ 23 VELDAESRYQQALVCYQEGIDMLLQVLKGT-------K---ESSK---RCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTC-------C---CHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhcc-------C---CHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999998876521 0 1111 2234456666666666554443
No 3
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.76 E-value=39 Score=23.61 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=36.7
Q ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhccccc
Q 014089 308 LLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRD 376 (431)
Q Consensus 308 ~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~ 376 (431)
....+.++|-+|+.++..|.+++..+.+.-. ..+... ..+..++.+-+.||+.-=++
T Consensus 19 v~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~---------~~~~~k---~~l~~k~~~Yl~RAE~LK~~ 75 (77)
T d1wr0a1 19 AQEDKAGNYEEALQLYQHAVQYFLHVVKYEA---------QGDKAK---QSIRAKCTEYLDRAEKLKEY 75 (77)
T ss_dssp HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC---------CTGGGG---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhccC---------CCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999988876411 011111 22445666667777654443
No 4
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=16.20 E-value=1.4e+02 Score=22.62 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 014089 254 CEMVKYWQQAQDNIMNL 270 (431)
Q Consensus 254 ~q~s~~Y~~A~~~l~~~ 270 (431)
.++..+|+.|+..+...
T Consensus 32 ~~A~~~Y~~al~~~~~~ 48 (168)
T d1kt1a1 32 VQAVIQYGKIVSWLEME 48 (168)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556788888777543
No 5
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.13 E-value=2e+02 Score=21.86 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=7.6
Q ss_pred CccchhHHHHHHHHHHH
Q 014089 311 PSEKFHGMAVAALQAAD 327 (431)
Q Consensus 311 ~~~~k~GeaIa~L~~A~ 327 (431)
...++|-+|+..|+.|.
T Consensus 107 ~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 107 LAVNDFELARADFQKVL 123 (170)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 33444444444444443
No 6
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1 {Leishmania major [TaxId: 5664]}
Probab=11.70 E-value=69 Score=24.96 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=6.6
Q ss_pred CCcccccc
Q 014089 1 MGCFLSTS 8 (431)
Q Consensus 1 ~~~~~~~~ 8 (431)
|||+.|+.
T Consensus 1 mgc~~s~~ 8 (131)
T d2fe0a1 1 MGCGASSE 8 (131)
T ss_dssp CCCSSCCC
T ss_pred CCCccCCC
Confidence 99999854
No 7
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.62 E-value=1.1e+02 Score=22.55 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHH
Q 014089 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKA 187 (431)
Q Consensus 139 EkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~A 187 (431)
....++||+|.+ |.+.+ ...+|..+|++|
T Consensus 70 ~~~~~~~~Lg~~-y~~~g-------------------~~~~A~~~~~~a 98 (122)
T d1nzna_ 70 EQRDYVFYLAVG-NYRLK-------------------EYEKALKYVRGL 98 (122)
T ss_dssp HHHHHHHHHHHH-HHHTT-------------------CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHHh-------------------hhHHHHHHHHHH
Confidence 456789999955 44432 267888888876
No 8
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.13 E-value=2.9e+02 Score=20.32 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q 014089 142 SVLHLMAMLS 151 (431)
Q Consensus 142 sVLfNiaal~ 151 (431)
.+++|+|.++
T Consensus 32 ~~~~~~g~~l 41 (145)
T d1zu2a1 32 DNLTRWGGVL 41 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677888553
No 9
>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.03 E-value=1e+02 Score=25.15 Aligned_cols=102 Identities=24% Similarity=0.196 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccCC--C-CCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCCCCCC
Q 014089 314 KFHGMAVAALQAADEYFKESKKACEAFNVAP--P-LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 390 (431)
Q Consensus 314 ~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~--p-~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~lp~l 390 (431)
-.||.|++.-|++..-+.+..+....-++.. | ..+-| +-++-|+.+.+ =.-|.+|+.+.|=++.+..
T Consensus 30 PGYGmAVAqAQ~~v~el~~~L~~~g~~V~faIHPVAGRMP---GHmNVLLAEa~-------VpYd~v~emdeiN~~f~~~ 99 (180)
T d1pnoa_ 30 PGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMP---GHMNVLLAEAN-------VPYDEVFELEEINSSFQTA 99 (180)
T ss_dssp ECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTST---THHHHHHHHTT-------CCGGGEEEHHHHGGGGGGC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCcceEEEeehhhhhhh---cchhheeeeec-------CCHHHHcChhhhcchhhhc
Confidence 3599999998888877777665533211111 3 22223 44666665555 5555555444444333322
Q ss_pred C-----cccccccccccCCC-------CCCCCCCCcc-------ccccccccCC
Q 014089 391 P-----DFALALKPDEFQLP-------PVHPSWTDEN-------MNRGQAGANQ 425 (431)
Q Consensus 391 ~-----~~~l~vkp~~~~lP-------~~~~~w~~~~-------~~~~~~~~~~ 425 (431)
+ ++.=.|.|..-+-| |+.+.|...+ +..||+|-.-
T Consensus 100 Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~kak~Viv~KRsm~~GyaGv~N 153 (180)
T d1pnoa_ 100 DVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVEN 153 (180)
T ss_dssp SEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCC
T ss_pred cEEEEecccceeChhhhcCCCCcccCCceeeeecCCEEEEEECCccCCcCCCCC
Confidence 2 22222565555433 3457787643 2378888543
No 10
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.02 E-value=1.1e+02 Score=24.12 Aligned_cols=26 Identities=4% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHHHHHH
Q 014089 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAA 188 (431)
Q Consensus 143 VLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~fq~AA 188 (431)
++||+|.++ ...+ ....|..+|++|-
T Consensus 38 ~~~nlG~~~-~~~g-------------------~~~~A~~~~~kAl 63 (192)
T d1hh8a_ 38 ICFNIGCMY-TILK-------------------NMTEAEKAFTRSI 63 (192)
T ss_dssp HHHHHHHHH-HHTT-------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcC-------------------CchhHHHHHHHHH
Confidence 689999664 4322 2679999999984
Done!