BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014091
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 236/401 (58%), Gaps = 6/401 (1%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD L+ ++ + CCNELN G++A+GYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
G A VVTF+VG +S +NA+ GAY+ENLPVI I G PNSND GT ILHHTIG D++
Sbjct: 64 NGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + +TC+ + + A ID I TAL+E KP Y+ I+CN+ P PV
Sbjct: 124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIAS--EPCVRPGPV 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
L+ + L+AAV+AT L K+ PV++ G +R A A A LAD +
Sbjct: 182 SSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVT 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
IM + KG PE H F G YWG VS+ E+VE++DA + + P+FNDYS+VG+S K
Sbjct: 242 IMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKG 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
I+ +P RVTV G+ A FL ALA+K + + + VP +
Sbjct: 302 PNVILAEPDRVTVDGRAYDGFTLRA-FLQALAEKAPARPASAQ---KSSVPTCSLTATSD 357
Query: 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPE 428
L + + +HI +L+ +T ++AETGDSWFN ++ LP
Sbjct: 358 EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPR 398
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 246/404 (60%), Gaps = 10/404 (2%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD+L+ + V CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A VVT++VG LS +AI GAY+ENLPVI I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + IT + + +A ID I TAL+E KPVY+ I+CN+ + P A P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASM--PCAAPGPA 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
+ S++ L AAVE T F+ K ++ G +R A A++A ++ ADA G +A
Sbjct: 182 SALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVA 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
M + K PE +PH+IGT WG VS + ++ ADA + + P+FNDYS+ G++ +
Sbjct: 242 TMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDP 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
+K ++ +P V V NG V + D+L+ LA+K+ K T AL+ ++ + +K+A
Sbjct: 302 KKLVLAEPRSVVV-NGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAG---ELKKAA 357
Query: 388 ----NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP 427
+ PL + + ++ +L+ +T VIAETGDSWFN Q+++LP
Sbjct: 358 PADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 246/404 (60%), Gaps = 10/404 (2%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD+L+ + V CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A VVT++VG LS +AI GAY+ENLPVI I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + IT + + +A ID I TAL+E KPVY+ I+CN+ + P A P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASM--PCAAPGPA 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
+ S++ L AAVE T F+ K ++ G +R A A++A ++ ADA G +A
Sbjct: 182 SALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVA 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
M + K PE +PH+IGT WG VS + ++ ADA + + P+FNDYS+ G++ +
Sbjct: 242 TMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDP 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
+K ++ +P V V NG V + D+L+ LA+K+ K T AL+ ++ + +K+A
Sbjct: 302 KKLVLAEPRSVVV-NGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAG---ELKKAA 357
Query: 388 ----NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP 427
+ PL + + ++ +L+ +T VIAETGDSWFN Q+++LP
Sbjct: 358 PADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 243/404 (60%), Gaps = 10/404 (2%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD+L+ + V CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A VVT++VG LS +AI GAY+ENLPVI I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + IT + + +A ID I TAL+E KPVY+ I+CN+ + P A P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASM--PCAAPGPA 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
+ S++ L AAV+ T F+ K ++ G +R A A++A ++ DA G +A
Sbjct: 182 SALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVA 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
M + K PE + +IGT WG VS + ++ ADA + + P+FNDYS+ G++ +
Sbjct: 242 TMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDP 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
+K ++ +P V V NG V + D+L+ LA+K+ K T +L+ ++ + +K+A
Sbjct: 302 KKLVLAEPRSVVV-NGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAG---ELKKAA 357
Query: 388 ----NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP 427
+ PL + + ++ +L+ +T VIAETGDSWFN Q+++LP
Sbjct: 358 PADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLP 401
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 138/409 (33%), Positives = 207/409 (50%), Gaps = 15/409 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLGR+L RL ++ + +F +PGDFNL+LLD++ P + G NELNA YAADGYAR
Sbjct: 5 TLGRYLFERLKQVEVQTIFGLPGDFNLSLLDNIYEVPGMRWAGNANELNAAYAADGYARL 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSVSSQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
R I+ + A++ ++ A ID I T +PVY+ + NL + P D
Sbjct: 125 FHRMSSNISETTAMITDINTAPAEIDRCIRTTYVSQRPVYLGLPANLVDLTVPASLLD-T 183
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
P L+ K ++ E +E + +A PV++ A+ +L D T +P
Sbjct: 184 PIDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHDAKAETKKLIDLTQFPAF 243
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
+ P GKG + E HP F G Y G +SS E VESAD + VG + +D+++ +S K
Sbjct: 244 VTPMGKGSIDEKHPRFGGVYVGTLSSPAVKEAVESADLVLSVGALLSDFNTGSFSYSYKT 303
Query: 328 EKAIIVQPH----RVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVP--PGI 381
+ IV+ H ++ P + F AL K L K A + Y+ + VP P
Sbjct: 304 KN--IVEFHSDYTKIRSATFPGVQMKF------ALQKLLTKVADAAKGYKPVPVPSEPEH 355
Query: 382 PVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VI ETG S F + P N
Sbjct: 356 NEAVADSTPLKQEWVWTQVGEFLREGDVVITETGTSAFGINQTHFPNNT 404
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 199/409 (48%), Gaps = 16/409 (3%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADG 83
AS+ T+G +L RL E+G +++F VPGD+NL LD +I+ ++ +G NELNA Y ADG
Sbjct: 22 ASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADG 81
Query: 84 YARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143
YAR++ A + TF VG LS +N +AG+Y+ENLPV+ IVG P S + +HHT+
Sbjct: 82 YARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141
Query: 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFA 203
DF ++ + +T ++ ++ +E ID +S LKE KPVYI NLP A
Sbjct: 142 DFKHFMKMHEPVTAARTLLTAENATYE-IDRVLSQLLKERKPVYI----NLPVDVAAAKA 196
Query: 204 RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263
P + + + + L A KPV++ G + +K + T
Sbjct: 197 EKPALSLEKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETK 256
Query: 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL 323
PI + GK V E P F+G Y G +S VESAD + +G D S+ ++
Sbjct: 257 LPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTH 316
Query: 324 LIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALA--KKLRKNTTALENYRRIYVPPGI 381
+ + K I + + N + F A +S+L+ K + ++ ++P
Sbjct: 317 HLDENKMISLNIDEGIIFNKVVEDFDFRA-VVSSLSELKGIEYEGQYIDKQYEEFIPSSA 375
Query: 382 PVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
P+ + + L++ ++ + + ++AE G S+F + L N
Sbjct: 376 PLSQDR--------LWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNS 416
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 200/409 (48%), Gaps = 15/409 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVK-PVLVGGPNIRVAKAQKAFIELADATGYP 265
+ L P N E V T L+K K PV++ + +L D T +P
Sbjct: 185 IDMSLKP---NDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFP 241
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S
Sbjct: 242 AFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSY 301
Query: 326 KKEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPV 383
K + + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 302 KTKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTTIADAAKGYKPVAVPARTPA 355
Query: 384 KRA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 404
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 199/408 (48%), Gaps = 13/408 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
+ L P ++ + ++ + A PV++ + +L D T +P
Sbjct: 185 IDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 242
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S K
Sbjct: 243 FVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 302
Query: 327 KEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVK 384
+ + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 303 TKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTNIADAAKGYKPVAVPARTPAN 356
Query: 385 RA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 357 AAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 404
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 199/408 (48%), Gaps = 13/408 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 4 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 64 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTV 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 124 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 183
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
+ L P ++ + ++ + A PV++ + +L D T +P
Sbjct: 184 IDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 241
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S K
Sbjct: 242 FVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 301
Query: 327 KEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVK 384
+ + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 302 TKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTNIADAAKGYKPVAVPARTPAN 355
Query: 385 RA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 356 AAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 403
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 199/408 (48%), Gaps = 13/408 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
+ L P ++ + ++ + A PV++ + +L D T +P
Sbjct: 185 IDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 242
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S K
Sbjct: 243 FVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 302
Query: 327 KEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVK 384
+ + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 303 TKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTNIADAAKGYKPVAVPARTPAN 356
Query: 385 RA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 357 AAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 404
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 199/409 (48%), Gaps = 15/409 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVK-PVLVGGPNIRVAKAQKAFIELADATGYP 265
+ L P N E V T L K K PV++ + +L D T +P
Sbjct: 185 IDMSLKP---NDAESEKEVIDTILVLIKDAKNPVILADACCSRHDVKAETKKLIDLTQFP 241
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S
Sbjct: 242 AFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSY 301
Query: 326 KKEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPV 383
K + + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 302 KTKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTAIADAAKGYKPVAVPARTPA 355
Query: 384 KRA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 404
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 199/409 (48%), Gaps = 15/409 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PG FNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPT-FARDP 206
R I+ + A++ ++ A ID I T +PVY+ + NL + P + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTP 184
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVK-PVLVGGPNIRVAKAQKAFIELADATGYP 265
+ L P N E V T L+K K PV++ + +L D T +P
Sbjct: 185 IDMSLKP---NDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFP 241
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S
Sbjct: 242 AFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSY 301
Query: 326 KKEKAIIVQPHRVTVGNG--PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPV 383
K + + + + N P + F+ L K L A + Y+ + VP P
Sbjct: 302 KTKNIVEFHSDHMKIRNATFPGVQMKFV------LQKLLTAIADAAKGYKPVAVPARTPA 355
Query: 384 KRA--QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENC 430
A + PL+ ++ + + L VIAETG S F + P N
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNT 404
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 197/409 (48%), Gaps = 31/409 (7%)
Query: 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVG 91
+L RL + GA +F VPGD+NL LDH+I P++ VGC NELNA YAADGYAR +G
Sbjct: 10 YLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFA 69
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151
A + TF VG LS +N IAG+Y+E++PV+ IVG P + +LHHT+G +F
Sbjct: 70 ALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129
Query: 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP---------GIPHPTF 202
+ IT +QAV+ +E ID ++T L+E +P Y+ + ++ + H
Sbjct: 130 SEPITVAQAVLTEQNACYE-IDRVLTTMLRERRPGYLMLPADVAKKAATPPVNALTHKQA 188
Query: 203 ARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261
D N+L + ADFL VL G + K K + +A A
Sbjct: 189 HADSACLKAFRDAAENKLAMSKRTALLADFL------VLRHGLKHALQKWVKE-VPMAHA 241
Query: 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY 321
T M GKG+ E F GTY G+ S+ E +E AD + VG F D + G+
Sbjct: 242 T------MLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGF 295
Query: 322 SLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTA-LENYRRIYVPPG 380
+ + + I VQPH VG+ G + M + L + +++ A L + +P
Sbjct: 296 THQLTPAQTIEVQPHAARVGDVWFTG-IPMNQAIETLVELCKQHVHAGLMSSSSGAIPFP 354
Query: 381 IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPEN 429
P + L ++ +Q + ++A+ G S F LRLP +
Sbjct: 355 QP-----DGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPAD 398
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 169/401 (42%), Gaps = 18/401 (4%)
Query: 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR-S 87
L L R L + GA+ +F +PGDF L L L +E G+AAD AR S
Sbjct: 23 LAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYS 82
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G VT+ G +++NA+AGAY+E PV+ I G P + + +LHH D
Sbjct: 83 STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLD--T 140
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+ + F+ IT +QA +++ A I + A +S+PVY+ I N+ DP
Sbjct: 141 QFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNMVNAEVEPVGDDPA 200
Query: 208 -PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
P ++ L A + + A PVL+ +R + ELA G P+
Sbjct: 201 WPV-------DRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPV 253
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
G+GL+ + +GTY G + +VE +D +G I +D + I
Sbjct: 254 VTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKID 313
Query: 327 KEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRA 386
K I VT+G + + +A + AL ++L + P G+ +A
Sbjct: 314 LRKTIHAFDRAVTLGYH-TYADIPLAGLVDALLERLPPSDRTTRGKEPHAYPTGL---QA 369
Query: 387 QNEPLRVNVLFKHIQDMLSGDTA---VIAETGDSWFNCQKL 424
EP+ + + + D + + A+ GD F +
Sbjct: 370 DGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDM 410
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 133/310 (42%), Gaps = 35/310 (11%)
Query: 16 APAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNEL 75
AP R GA + L L G + VF+ PG ++ + L + V +E
Sbjct: 6 APDQPRKGADI------LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQ 59
Query: 76 NAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR 134
+AA+GYARS G G C+ T G ++++ +A A +++P++ I G GT+
Sbjct: 60 GGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA 119
Query: 135 ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193
I + ++IT +V ++ D +I+ A A PV + + +
Sbjct: 120 FQETPI--------VEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 171
Query: 194 LP---GIPHPTFA-RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRV 248
+ IP+ A R P PK LE V ++++ KPVL VGG +
Sbjct: 172 IQQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVR----LISESKKPVLYVGGGCLNS 227
Query: 249 AKAQKAFIELADATGYPIAIMPSGKGLVP---EHHPHFIGTYWGAVSSSFCGEIVESADA 305
+ F+EL TG P+A G G P E H +G + G V +++ VE +D
Sbjct: 228 SDELGRFVEL---TGIPVATTLMGLGSYPXDDELSLHMLGMH-GTVYANYA---VEHSDL 280
Query: 306 YVFVGPIFND 315
+ G F+D
Sbjct: 281 LLAFGVRFDD 290
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 118/283 (41%), Gaps = 25/283 (8%)
Query: 45 VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103
VF PG L + D + + N V +E AG+ A+GYAR+ G G +VT G +
Sbjct: 100 VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159
Query: 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163
V+ +A A+++ +P++ G ++ GT+ + + ++ T +V
Sbjct: 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV--------VGISRSCTKWNVMVK 211
Query: 164 NLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLG 220
++ + I+ A A PV + +LP R+P+P L NQL
Sbjct: 212 SVEELPLRINEAFEIATSGRPGPVLV----DLPKDVTAAILRNPIPTKTTLPSNALNQLT 267
Query: 221 LEA-------AVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272
A ++ AD +N A KPVL VG + A + EL+D P+ G
Sbjct: 268 SRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQG 327
Query: 273 KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315
G + P + G + V++AD + VG F+D
Sbjct: 328 LGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDD 369
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 118/283 (41%), Gaps = 25/283 (8%)
Query: 45 VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103
VF PG L + D + + N V +E AG+ A+GYAR+ G G +VT G +
Sbjct: 53 VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 112
Query: 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163
V+ +A A+++ +P++ G ++ GT+ + + ++ T +V
Sbjct: 113 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV--------VGISRSCTKWNVMVK 164
Query: 164 NLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLG 220
++ + I+ A A PV + +LP R+P+P L NQL
Sbjct: 165 SVEELPLRINEAFEIATSGRPGPVLV----DLPKDVTAAILRNPIPTKTTLPSNALNQLT 220
Query: 221 LEA-------AVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272
A ++ AD +N A KPVL VG + A + EL+D P+ G
Sbjct: 221 SRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQG 280
Query: 273 KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315
G + P + G + V++AD + VG F+D
Sbjct: 281 LGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDD 322
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 133/310 (42%), Gaps = 35/310 (11%)
Query: 16 APAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNEL 75
AP R GA + L L G + VF+ PG ++ + L + V +E
Sbjct: 7 APDQPRKGADI------LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQ 60
Query: 76 NAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR 134
+AA+GYARS G G C+ T G ++++ +A A +++P++ I G GT+
Sbjct: 61 GGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA 120
Query: 135 ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193
I + ++IT +V ++ D +I+ A A PV + + +
Sbjct: 121 FQETPI--------VEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172
Query: 194 LP---GIPHPTFA-RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRV 248
+ IP+ A R P PK LE V ++++ KPVL VGG +
Sbjct: 173 IQQQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVR----LISESKKPVLYVGGGCLNS 228
Query: 249 AKAQKAFIELADATGYPIAIMPSGKGLVP---EHHPHFIGTYWGAVSSSFCGEIVESADA 305
+ F+EL TG P+A G G P E H +G + G V +++ VE +D
Sbjct: 229 SDELGRFVEL---TGIPVASTLMGLGSYPXDDELSLHMLGMH-GTVYANYA---VEHSDL 281
Query: 306 YVFVGPIFND 315
+ G F+D
Sbjct: 282 LLAFGVRFDD 291
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 151/389 (38%), Gaps = 65/389 (16%)
Query: 67 NLVGCCNELNAGYAADGY----ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIV 122
++ EL + +GY RS VGA VG L + A+ A + +P + I
Sbjct: 45 RVINPATELGGAWMVNGYNYVKDRSAAVGAW---HCVGNLLLHAAMQEARTGRIPAVHI- 100
Query: 123 GGPNSNDYGTNRILHHTIGLPDFTQEL--RCFQAITCSQAVVNNLGDAHELIDTAISTAL 180
G NS+ G + Q++ + F I S V L E I A A
Sbjct: 101 -GLNSDG--------RLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEAIHEAFRVAE 151
Query: 181 KE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV---SNQLGLEAAVEATADFLNKAV 236
+ P Y+ I +L A P A V N+ EAA + A A
Sbjct: 152 GHPAGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLHAPNEDVREAAAQLVA-----AK 206
Query: 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFC 296
PV++ G + + +A ++LA+ G P+ +G G+ PE H +G S+ FC
Sbjct: 207 NPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMG------SAGFC 260
Query: 297 G-----EIVESADAYVFVGPIFNDYS-SVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVF 350
G +++ +AD + +G +D+ + GY I P V V P++ F
Sbjct: 261 GWKSANDMMAAADFVLVLGSRLSDWGIAQGY---------ITKMPKFVHVDTDPAVLGTF 311
Query: 351 MADFLSALAKKLRKNTTALENYRRIYVPPGIP----VKRAQNEPLRVNVLFK-----HIQ 401
LS +A T +E I V PG V+ + E R F+ ++
Sbjct: 312 YFPLLSVVADA----KTFMEQL--IEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVR 365
Query: 402 DMLSGDTAVIAETGDSWFNCQKLRLPENC 430
+ SGD + A + +K++ PE+
Sbjct: 366 EQESGD-GMPASMFRAMAEVRKVQRPEDI 393
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 12/214 (5%)
Query: 73 NELNAGYAAD--GYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDY 130
+E +AGYAA GY + G C+ G L+ + ++A A + P+I + G
Sbjct: 55 HEQHAGYAASIAGYIEGK-PGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSE---- 109
Query: 131 GTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP--VYI 188
I+ G + ++ + + +N++ D I A+ TA+ +P VY+
Sbjct: 110 --REIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAV-SGRPGGVYV 166
Query: 189 SISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248
+ L G + + F Q+ E A+ AD + A +PV++ G
Sbjct: 167 DLPAKLFGQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAY 226
Query: 249 AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH 282
A+ L + TG P M KGL+P++HP
Sbjct: 227 AQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQ 260
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGSNQLPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 376
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 376
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 376
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 376
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 1 ASVHGTTYELLRRQ---GIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGI----- 52
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 53 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 108
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 109 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 157
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 158 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 215
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 216 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 273
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 274 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 329
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 330 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 375
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 46/395 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 1 ASVHGTTYELLRRQ---GIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGI----- 52
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 53 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 108
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 109 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 157
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 158 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 215
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 216 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 273
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 274 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 329
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDM 403
E+ R++ P K Q+ L +F + DM
Sbjct: 330 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDM 364
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 46/406 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGANELPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDMLSGDTAVIAET 414
E+ R++ P K Q+ L +F + DM + + E+
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNES 376
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 46/395 (11%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGSNALPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL 369
P+F + L + I V + P +G +AD + A+A L
Sbjct: 275 APVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAP-MGDAIVAD-IGAMASALANLVE-- 330
Query: 370 ENYRRIYVPPGIPVKRAQNE-PLRVNVLFKHIQDM 403
E+ R++ P K Q+ L +F + DM
Sbjct: 331 ESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDM 365
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 41/304 (13%)
Query: 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD-------HLIAEPELNLVGCCNELN 76
ASV L RR G VF PG L L +++A E +VG
Sbjct: 2 ASVHGTTYELLRRQ---GIDTVFGNPGXNELPFLKDFPEDFRYILALQEACVVGI----- 53
Query: 77 AGYAADGYARSRGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI 135
ADGYA++ A + + G + + A++ A++ + P+I G G +
Sbjct: 54 ----ADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEAL 109
Query: 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195
L + + + + L + S A V H + ++ PVY+S+
Sbjct: 110 LTN-VDAANLPRPLVKWSYEPASAAEV-----PHAMSRAIHMASMAPQGPVYLSV----- 158
Query: 196 GIPHPTFARDPVP---FFLAPKVSNQLGL-EAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
P+ + +D P VS+ + L + ++ LN A P +V GP++ A A
Sbjct: 159 --PYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANA 216
Query: 252 QKAFIELADATGYPIAIMPSG-KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ LA+ P+ + PS + P HP F G +++ +++E D + +G
Sbjct: 217 NADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA--ISQLLEGHDVVLVIG 274
Query: 311 -PIF 313
P+F
Sbjct: 275 APVF 278
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 36/317 (11%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG +++D L AE + ++ + +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
GG ++N + A +++PV+ ++G +GT + T QE+ + +
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKV 215
N +ID AI A + I +LP + + P + A
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP------WQQIPAEDWYASAN 187
Query: 216 SNQLGL--EAAVEATADF---LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
S Q L E V+A L A +P++ G R KA K +L+ P+
Sbjct: 188 SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTY 245
Query: 271 SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG------PIFNDYSSVGYSLL 324
KG+V + +P ++G+ V+ E + AD +FVG + + + Y L
Sbjct: 246 PAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQ 304
Query: 325 IKKEKAIIVQPHRVTVG 341
I + A + + H+ +
Sbjct: 305 IDIDPAKLGKRHKTDIA 321
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 36/317 (11%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG +++D L AE + ++ + +E AA A+ G +G C +
Sbjct: 17 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 76
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
GG ++N + A +++PV+ ++G +GT + T QE+ + +
Sbjct: 77 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 125
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKV 215
N +ID AI A + I +LP + + P + A
Sbjct: 126 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP------WQQIPAEDWYASAN 179
Query: 216 SNQLGL--EAAVEATADF---LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
S Q L E V+A L A +P++ G R KA K +L+ P+
Sbjct: 180 SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTY 237
Query: 271 SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG------PIFNDYSSVGYSLL 324
KG+V + +P ++G+ V+ E + AD +FVG + + + Y L
Sbjct: 238 PAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQ 296
Query: 325 IKKEKAIIVQPHRVTVG 341
I + A + + H+ +
Sbjct: 297 IDIDPAKLGKRHKTDIA 313
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 36/317 (11%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG +++D L AE + ++ + +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
GG ++N + A +++PV+ ++G +GT + T QE+ + +
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKV 215
N +ID AI A + I +LP + + P + A
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP------WQQIPAEDWYASAN 187
Query: 216 SNQLGL--EAAVEATADF---LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
S Q L E V+A L A +P++ G R KA K +L+ P+
Sbjct: 188 SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTY 245
Query: 271 SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG------PIFNDYSSVGYSLL 324
KG+V + +P ++G+ V+ E + AD +FVG + + + Y L
Sbjct: 246 PAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQ 304
Query: 325 IKKEKAIIVQPHRVTVG 341
I + A + + H+ +
Sbjct: 305 IDIDPAKLGKRHKTDIA 321
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 127/317 (40%), Gaps = 36/317 (11%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG +++D L AE + ++ + +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
GG ++N + A +++PV+ ++G +GT + T QE+ + +
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKV 215
N +ID AI A + I +LP + + P + A
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP------WQQIPAEDWYASAN 187
Query: 216 SNQLGL--EAAVEATADF---LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
S Q L E V+A L A +P++ G R KA K +L+ P+
Sbjct: 188 SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTY 245
Query: 271 SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG------PIFNDYSSVGYSLL 324
KG+V + +P ++G+ A E + AD +FVG + + + Y L
Sbjct: 246 PAKGIVADRYPAYLGSANRAAQKP-ANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQ 304
Query: 325 IKKEKAIIVQPHRVTVG 341
I + A + + H+ +
Sbjct: 305 IDIDPAKLGKRHKTDIA 321
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 123/320 (38%), Gaps = 42/320 (13%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG +++D L AE + ++ + +E AA A+ G +G C +
Sbjct: 17 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 76
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
GG ++N + A +++PV+ ++G +GT + T QE+ + +
Sbjct: 77 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 125
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD--------PV 207
N +ID AI A + I +LP A D
Sbjct: 126 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPW--QQISAEDWYASANNYQT 183
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
P P V AV L A +P++ G R KA K +L+ P+
Sbjct: 184 PLLPEPDVQ-------AVTRLTQTLLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLM 234
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG------PIFNDYSSVGY 321
KG+V + +P ++G+ V+ E + AD +FVG + + + Y
Sbjct: 235 STYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRY 293
Query: 322 SLLIKKEKAIIVQPHRVTVG 341
L I + A + + H+ +
Sbjct: 294 FLQIDIDPAKLGKRHKTDIA 313
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 35 RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACV 94
LV+ G K+ PG + L + P L + +E +AG+ A G A++ V
Sbjct: 19 EELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKAS--KRPV 76
Query: 95 VTFTVGGLSVLN---AIAGAYSENLPVICI----------VGGPNSND----YGTNRILH 137
V G + N A+A A +P+I + VG P + D YG++
Sbjct: 77 VLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDF 136
Query: 138 HTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGI 197
+ LP+ ++E+ + S+AV D A+ T PV+++ P +
Sbjct: 137 TDMALPENSEEMLRYAKWHGSRAV-----------DIAMKTP---RGPVHLNFPLREPLV 182
Query: 198 PHPTFARDPVPFFLAPKVSNQLGLEAAVEATAD-FLNKAV------KPVLVGGPNIRVAK 250
P +P PF K + + + E D + K V K V V GP I +
Sbjct: 183 P----ILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVVGP-IDKKE 237
Query: 251 AQKAFIELADATGYPIAIMP 270
++ ++LA G+PI P
Sbjct: 238 LEQPMVDLAKKLGWPILADP 257
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 77 AGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG-GPNSNDYGTN 133
A + A+GY R+ +G C+ T G + A+ A ++++P++CI G P + + +
Sbjct: 77 ASHXAEGYTRATAGNIGVCLGTSGPAGTDXITALYSASADSIPILCITGQAPRARLHKED 136
Query: 134 RILHHTIGLPDFTQELRCFQAITCSQA--VVNNLGDAHELIDTAISTALKESKPVYISI- 190
+ + + + A+T +A V L A L + PV + +
Sbjct: 137 ---FQAVDIEAIAKPV-SKXAVTVREAALVPRVLQQAFHLXRSG------RPGPVLVDLP 186
Query: 191 -SCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA 249
+ I +P+P + +++ +E AVE L +A +PV+V G + A
Sbjct: 187 FDVQVAEIEFDPDXYEPLPVY--KPAASRXQIEKAVEX----LIQAERPVIVAGGGVINA 240
Query: 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHH 280
A + A+ T P+ G G +P+ H
Sbjct: 241 DAAALLQQFAELTSVPVIPTLXGWGCIPDDH 271
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 66 LNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGG 124
++ V +E AG AAD AR G AC T G ++ IA + + PVI +
Sbjct: 49 IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQ 108
Query: 125 PNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE---LIDTAISTALK 181
S+D N D Q L + L HE L+D+A++ A+
Sbjct: 109 SESHDIFPN----------DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMT 158
Query: 182 ES-KPVYISISCNLPG--------IPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFL 232
E P +IS+ +L G +P+P P + G + A + A L
Sbjct: 159 EPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVAD-----GWQKAADQAAALL 213
Query: 233 NKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHH 280
+A PVLV G + A A LA+ P+ KG++P H
Sbjct: 214 AEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGH 261
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 66 LNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGG 124
++ V +E AG AAD AR G AC T G ++ IA + + PVI +
Sbjct: 49 IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAAQ 108
Query: 125 PNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE---LIDTAISTALK 181
S+D N D Q L + L HE L+D+A++ A
Sbjct: 109 SESHDIFPN----------DTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAXT 158
Query: 182 ES-KPVYISISCNLPG--------IPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFL 232
E P +IS+ +L G +P+P P + G + A + A L
Sbjct: 159 EPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVAD-----GWQKAADQAAALL 213
Query: 233 NKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHH 280
+A PVLV G + A A LA+ P+ KG++P H
Sbjct: 214 AEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGH 261
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNA---GY 79
GA TL R LA RL+E+G + V + GD + HL + EL ++N G+
Sbjct: 379 GAGKSTLARALAARLMEMGGRCVTLLDGDI---VRRHLSS--ELGFSKAHRDVNVRRIGF 433
Query: 80 AADGYARSRGVGAC 93
A ++RG+ C
Sbjct: 434 VASEITKNRGIAIC 447
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP 281
+V + L KA +P+++ G ++A + E ++ P M KG++ + HP
Sbjct: 200 SVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHP 257
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 362 LRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNV 395
LR+ L N+ ++++ PG P+ RA + +N+
Sbjct: 428 LRREWETLHNFPKVFILPGTPLSRADLRAVNINL 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,441,788
Number of Sequences: 62578
Number of extensions: 566835
Number of successful extensions: 1378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 58
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)