Query 014091
Match_columns 431
No_of_seqs 170 out of 1274
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 01:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0028 IlvB Thiamine pyrophos 100.0 1.5E-76 3.3E-81 613.2 35.1 381 26-423 1-391 (550)
2 PLN02573 pyruvate decarboxylas 100.0 2.2E-74 4.7E-79 606.3 44.8 405 25-429 14-418 (578)
3 COG3961 Pyruvate decarboxylase 100.0 4.8E-73 1E-77 554.8 34.7 400 25-431 2-403 (557)
4 TIGR01504 glyox_carbo_lig glyo 100.0 2.1E-71 4.6E-76 585.2 37.7 387 26-427 2-406 (588)
5 PRK08979 acetolactate synthase 100.0 2.2E-71 4.7E-76 584.5 36.5 392 26-428 3-410 (572)
6 PRK07979 acetolactate synthase 100.0 7.3E-71 1.6E-75 581.0 35.9 393 26-428 3-410 (574)
7 PRK07282 acetolactate synthase 100.0 8.1E-71 1.8E-75 579.1 35.8 391 25-429 8-408 (566)
8 KOG1184 Thiamine pyrophosphate 100.0 2.5E-70 5.5E-75 533.5 35.6 406 25-431 2-407 (561)
9 PRK06965 acetolactate synthase 100.0 2.6E-70 5.5E-75 577.6 37.3 392 25-428 19-426 (587)
10 PRK06725 acetolactate synthase 100.0 2.6E-70 5.7E-75 574.9 36.5 389 26-428 14-411 (570)
11 PRK06466 acetolactate synthase 100.0 2.9E-70 6.3E-75 576.5 36.5 393 25-427 2-411 (574)
12 PRK07789 acetolactate synthase 100.0 5.8E-70 1.3E-74 577.5 38.4 410 6-427 8-435 (612)
13 PLN02470 acetolactate synthase 100.0 4.8E-70 1E-74 575.7 37.0 396 14-426 4-413 (585)
14 TIGR03394 indol_phenyl_DC indo 100.0 1.7E-69 3.7E-74 564.7 40.6 385 28-424 1-391 (535)
15 PRK09107 acetolactate synthase 100.0 4.9E-70 1.1E-74 575.5 36.6 392 25-428 9-419 (595)
16 PRK07418 acetolactate synthase 100.0 5.4E-70 1.2E-74 578.2 36.7 386 24-424 16-419 (616)
17 PRK11269 glyoxylate carboligas 100.0 1.5E-69 3.3E-74 572.4 38.0 387 26-427 3-407 (591)
18 TIGR03393 indolpyr_decarb indo 100.0 5.2E-69 1.1E-73 563.0 41.4 389 28-428 2-393 (539)
19 PRK08527 acetolactate synthase 100.0 1.2E-69 2.6E-74 570.6 35.8 389 26-427 2-402 (563)
20 PRK08155 acetolactate synthase 100.0 2.8E-69 6E-74 568.2 37.6 389 25-428 11-408 (564)
21 PRK06048 acetolactate synthase 100.0 2.7E-69 5.8E-74 567.7 37.0 389 25-428 6-403 (561)
22 PRK06456 acetolactate synthase 100.0 3.2E-69 7E-74 568.9 36.3 387 26-422 1-403 (572)
23 CHL00099 ilvB acetohydroxyacid 100.0 3.3E-69 7.2E-74 568.9 36.0 389 25-424 8-415 (585)
24 PRK07710 acetolactate synthase 100.0 4.6E-69 1E-73 567.0 36.4 397 18-428 7-413 (571)
25 TIGR03457 sulphoacet_xsc sulfo 100.0 5.2E-69 1.1E-73 567.4 36.4 386 26-428 1-419 (579)
26 PRK08199 thiamine pyrophosphat 100.0 4E-69 8.6E-74 566.2 34.8 381 24-422 5-398 (557)
27 TIGR00118 acolac_lg acetolacta 100.0 5.1E-69 1.1E-73 565.8 35.6 388 27-427 1-400 (558)
28 PRK08273 thiamine pyrophosphat 100.0 7.5E-69 1.6E-73 567.5 36.2 389 26-429 2-405 (597)
29 PRK06882 acetolactate synthase 100.0 9.2E-69 2E-73 565.6 36.1 391 27-428 4-410 (574)
30 PRK08978 acetolactate synthase 100.0 1.2E-68 2.6E-73 561.8 36.3 377 27-422 1-383 (548)
31 PRK08322 acetolactate synthase 100.0 1.8E-68 3.9E-73 560.8 36.3 379 27-423 1-389 (547)
32 PRK07525 sulfoacetaldehyde ace 100.0 2.2E-68 4.7E-73 563.4 35.5 388 23-427 2-423 (588)
33 PRK08617 acetolactate synthase 100.0 2.7E-68 5.9E-73 559.6 35.6 382 25-423 3-397 (552)
34 PRK06546 pyruvate dehydrogenas 100.0 6.1E-68 1.3E-72 558.2 35.8 380 26-426 2-394 (578)
35 TIGR02418 acolac_catab acetola 100.0 1.1E-67 2.4E-72 553.5 36.0 378 29-423 1-391 (539)
36 PRK06276 acetolactate synthase 100.0 1.4E-67 3E-72 557.1 35.4 389 27-428 1-408 (586)
37 TIGR00173 menD 2-succinyl-5-en 100.0 1.7E-68 3.7E-73 544.5 27.3 382 29-425 2-401 (432)
38 PRK08611 pyruvate oxidase; Pro 100.0 3E-67 6.5E-72 553.1 37.3 382 27-428 4-397 (576)
39 TIGR02720 pyruv_oxi_spxB pyruv 100.0 6E-67 1.3E-71 550.7 35.3 385 29-428 1-397 (575)
40 PRK09124 pyruvate dehydrogenas 100.0 1E-66 2.3E-71 549.7 36.8 383 26-428 2-397 (574)
41 PRK07524 hypothetical protein; 100.0 1.3E-66 2.9E-71 544.8 36.9 382 26-429 1-396 (535)
42 TIGR03254 oxalate_oxc oxalyl-C 100.0 6.4E-67 1.4E-71 549.1 34.0 381 26-423 2-400 (554)
43 PRK06154 hypothetical protein; 100.0 1.3E-66 2.7E-71 546.5 36.1 382 23-426 16-418 (565)
44 PRK05858 hypothetical protein; 100.0 1.7E-66 3.7E-71 544.3 35.4 374 25-421 3-388 (542)
45 PRK09259 putative oxalyl-CoA d 100.0 1.5E-66 3.3E-71 547.6 34.2 383 25-423 8-407 (569)
46 PRK06457 pyruvate dehydrogenas 100.0 1.4E-66 3.1E-71 545.6 33.8 372 26-426 1-383 (549)
47 PRK06112 acetolactate synthase 100.0 3.6E-66 7.7E-71 546.1 36.9 394 16-423 3-419 (578)
48 PRK07064 hypothetical protein; 100.0 5.4E-66 1.2E-70 541.7 34.7 379 26-427 2-394 (544)
49 PRK08266 hypothetical protein; 100.0 2E-65 4.4E-70 536.9 33.7 371 26-423 3-385 (542)
50 PRK07092 benzoylformate decarb 100.0 4E-65 8.6E-70 532.9 35.2 373 26-422 11-390 (530)
51 PRK08327 acetolactate synthase 100.0 2.3E-65 5E-70 538.1 32.7 376 25-415 5-409 (569)
52 KOG1185 Thiamine pyrophosphate 100.0 1.5E-64 3.3E-69 488.8 28.7 376 24-419 11-409 (571)
53 KOG4166 Thiamine pyrophosphate 100.0 2.6E-65 5.7E-70 485.8 20.2 387 26-424 90-508 (675)
54 PRK07586 hypothetical protein; 100.0 8.5E-63 1.9E-67 514.0 36.8 362 27-424 1-370 (514)
55 PRK12474 hypothetical protein; 100.0 3.2E-62 6.9E-67 509.4 36.9 357 25-422 3-372 (518)
56 PRK07449 2-succinyl-5-enolpyru 100.0 1.8E-61 3.9E-66 509.8 24.4 382 26-422 8-407 (568)
57 COG3960 Glyoxylate carboligase 100.0 1.4E-56 3E-61 415.8 19.5 382 26-423 3-402 (592)
58 PLN02980 2-oxoglutarate decarb 100.0 3.6E-55 7.9E-60 503.0 28.3 379 27-417 301-720 (1655)
59 COG3962 Acetolactate synthase 100.0 9E-47 2E-51 363.0 24.6 385 24-416 4-420 (617)
60 cd07039 TPP_PYR_POX Pyrimidine 100.0 1E-43 2.2E-48 314.5 17.7 161 28-196 1-162 (164)
61 cd07038 TPP_PYR_PDC_IPDC_like 100.0 4.2E-42 9E-47 303.7 18.4 162 31-192 1-162 (162)
62 cd07037 TPP_PYR_MenD Pyrimidin 100.0 1.5E-41 3.3E-46 298.5 15.7 154 31-192 1-162 (162)
63 PF02776 TPP_enzyme_N: Thiamin 100.0 3.2E-40 7E-45 295.4 14.0 164 27-197 1-166 (172)
64 cd07035 TPP_PYR_POX_like Pyrim 100.0 2.8E-34 6.1E-39 252.7 16.7 153 31-192 1-155 (155)
65 COG1165 MenD 2-succinyl-6-hydr 100.0 3.7E-32 8E-37 270.3 19.4 372 27-420 8-402 (566)
66 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 1.5E-31 3.2E-36 236.6 16.7 154 29-190 1-158 (160)
67 cd06586 TPP_enzyme_PYR Pyrimid 100.0 4.3E-30 9.3E-35 225.5 16.7 154 31-192 1-154 (154)
68 TIGR03845 sulfopyru_alph sulfo 100.0 5E-28 1.1E-32 211.8 15.6 152 31-194 2-156 (157)
69 PF00205 TPP_enzyme_M: Thiamin 99.9 9.8E-27 2.1E-31 200.4 11.7 132 225-358 1-137 (137)
70 PRK00945 acetyl-CoA decarbonyl 99.6 2.6E-15 5.5E-20 131.6 9.5 131 226-361 25-167 (171)
71 TIGR00315 cdhB CO dehydrogenas 99.6 4.1E-15 8.9E-20 129.5 9.0 131 226-362 18-160 (162)
72 TIGR03297 Ppyr-DeCO2ase phosph 99.5 6.9E-13 1.5E-17 131.3 15.7 151 41-196 1-156 (361)
73 COG4032 Predicted thiamine-pyr 98.9 1E-08 2.2E-13 85.0 10.7 163 26-196 3-167 (172)
74 TIGR03336 IOR_alpha indolepyru 98.9 2.1E-06 4.6E-11 91.4 30.0 157 26-195 4-166 (595)
75 COG1880 CdhB CO dehydrogenase/ 98.5 5.3E-07 1.1E-11 76.3 9.1 125 226-363 26-169 (170)
76 PRK08659 2-oxoglutarate ferred 98.5 7.2E-06 1.6E-10 82.1 17.2 162 25-194 5-173 (376)
77 PRK09627 oorA 2-oxoglutarate-a 98.4 7.2E-06 1.6E-10 82.0 16.4 162 25-194 4-172 (375)
78 PRK07119 2-ketoisovalerate fer 98.4 9.2E-06 2E-10 80.7 16.8 161 25-194 5-173 (352)
79 TIGR03710 OAFO_sf 2-oxoacid:ac 98.3 1.5E-05 3.3E-10 84.1 16.2 165 24-196 193-364 (562)
80 PRK09622 porA pyruvate flavodo 98.2 3.5E-05 7.7E-10 78.1 16.2 159 26-194 12-177 (407)
81 PRK08366 vorA 2-ketoisovalerat 98.2 5.1E-05 1.1E-09 76.3 16.7 160 26-195 5-169 (390)
82 PRK08367 porA pyruvate ferredo 98.2 6.1E-05 1.3E-09 75.8 17.1 159 26-194 6-171 (394)
83 PF01855 POR_N: Pyruvate flavo 98.1 3.6E-05 7.8E-10 71.8 11.9 150 36-195 2-157 (230)
84 PF02552 CO_dh: CO dehydrogena 97.7 2.4E-05 5.1E-10 68.7 3.4 128 224-361 23-166 (167)
85 COG0674 PorA Pyruvate:ferredox 97.6 0.0026 5.6E-08 63.6 16.8 162 25-196 4-169 (365)
86 TIGR02176 pyruv_ox_red pyruvat 97.3 0.0071 1.5E-07 69.1 17.0 156 26-192 3-169 (1165)
87 PRK13030 2-oxoacid ferredoxin 97.0 0.13 2.8E-06 58.4 23.0 163 23-196 16-206 (1159)
88 COG1029 FwdB Formylmethanofura 96.8 0.0053 1.2E-07 59.4 8.0 107 220-338 64-188 (429)
89 COG4231 Indolepyruvate ferredo 96.0 0.15 3.2E-06 53.5 13.6 157 27-196 16-179 (640)
90 PRK09193 indolepyruvate ferred 95.9 0.18 3.8E-06 57.3 14.8 164 22-196 23-214 (1165)
91 cd02761 MopB_FmdB-FwdB The Mop 95.4 0.045 9.8E-07 55.7 7.6 114 221-340 56-181 (415)
92 cd02013 TPP_Xsc_like Thiamine 94.9 0.57 1.2E-05 42.5 12.5 115 77-194 58-180 (196)
93 PF02775 TPP_enzyme_C: Thiamin 94.8 0.077 1.7E-06 46.1 6.3 108 75-190 31-153 (153)
94 cd07033 TPP_PYR_DXS_TK_like Py 94.4 2.5 5.4E-05 36.8 14.9 113 67-192 40-156 (156)
95 cd02006 TPP_Gcl Thiamine pyrop 94.1 0.66 1.4E-05 42.3 11.1 113 80-194 65-195 (202)
96 TIGR03181 PDH_E1_alph_x pyruva 94.1 0.4 8.8E-06 47.6 10.4 111 77-193 131-246 (341)
97 cd02004 TPP_BZL_OCoD_HPCL Thia 94.0 0.46 1E-05 42.0 9.6 109 77-193 53-172 (172)
98 PRK09444 pntB pyridine nucleot 93.7 0.11 2.4E-06 52.4 5.5 90 224-313 295-392 (462)
99 PLN00022 electron transfer fla 93.7 0.26 5.7E-06 48.9 8.1 116 232-364 234-354 (356)
100 cd02005 TPP_PDC_IPDC Thiamine 93.5 2.9 6.4E-05 37.4 14.0 92 97-193 75-174 (183)
101 COG2025 FixB Electron transfer 93.5 0.34 7.4E-06 47.0 8.2 116 232-364 192-312 (313)
102 cd02003 TPP_IolD Thiamine pyro 93.1 0.34 7.3E-06 44.4 7.3 144 45-194 18-185 (205)
103 PRK13029 2-oxoacid ferredoxin 92.9 2.9 6.3E-05 47.8 15.4 164 22-196 26-217 (1186)
104 smart00861 Transket_pyr Transk 92.9 2.1 4.6E-05 37.6 11.9 112 68-192 51-166 (168)
105 cd02001 TPP_ComE_PpyrDC Thiami 92.8 4.5 9.8E-05 35.2 13.8 103 80-193 50-155 (157)
106 PRK03363 fixB putative electro 92.6 0.46 1E-05 46.3 7.9 115 232-363 192-312 (313)
107 cd02010 TPP_ALS Thiamine pyrop 92.5 1.4 3E-05 39.3 10.2 109 80-194 56-171 (177)
108 cd02009 TPP_SHCHC_synthase Thi 92.4 4.6 0.0001 35.8 13.6 121 66-193 42-175 (175)
109 cd02015 TPP_AHAS Thiamine pyro 92.4 1.2 2.7E-05 39.9 9.9 108 79-194 57-175 (186)
110 cd02008 TPP_IOR_alpha Thiamine 92.4 2 4.2E-05 38.3 11.1 93 97-190 76-174 (178)
111 cd02000 TPP_E1_PDC_ADC_BCADC T 92.0 0.88 1.9E-05 44.1 9.0 101 90-196 126-231 (293)
112 PF02233 PNTB: NAD(P) transhyd 91.5 0.086 1.9E-06 53.7 1.4 86 224-313 296-393 (463)
113 PRK11916 electron transfer fla 91.4 0.76 1.6E-05 44.9 7.7 115 232-363 191-311 (312)
114 cd02768 MopB_NADH-Q-OR-NuoG2 M 91.1 0.72 1.6E-05 46.4 7.7 112 221-338 71-189 (386)
115 cd02752 MopB_Formate-Dh-Na-lik 91.1 0.24 5.1E-06 53.4 4.3 115 221-340 73-212 (649)
116 TIGR03129 one_C_dehyd_B formyl 90.9 0.67 1.4E-05 47.1 7.3 114 220-340 61-187 (421)
117 TIGR03182 PDH_E1_alph_y pyruva 90.9 1.6 3.4E-05 42.9 9.5 100 90-195 132-236 (315)
118 TIGR00232 tktlase_bact transke 90.8 4.8 0.0001 43.7 14.0 116 67-194 397-516 (653)
119 PRK06163 hypothetical protein; 90.7 7.3 0.00016 35.6 13.1 90 96-193 81-173 (202)
120 COG1029 FwdB Formylmethanofura 90.7 0.49 1.1E-05 46.2 5.5 111 222-338 232-370 (429)
121 COG1282 PntB NAD/NADP transhyd 90.5 0.26 5.5E-06 48.2 3.5 90 224-313 297-394 (463)
122 cd02002 TPP_BFDC Thiamine pyro 90.2 5.7 0.00012 35.1 11.9 134 50-191 25-177 (178)
123 cd07036 TPP_PYR_E1-PDHc-beta_l 90.2 13 0.00027 32.9 14.9 149 29-192 3-167 (167)
124 cd00568 TPP_enzymes Thiamine p 90.2 1.8 3.9E-05 37.7 8.5 107 78-191 52-167 (168)
125 PRK00481 NAD-dependent deacety 90.0 0.51 1.1E-05 44.4 5.1 68 295-362 170-240 (242)
126 TIGR01504 glyox_carbo_lig glyo 90.0 3.1 6.7E-05 44.5 11.6 98 97-194 443-556 (588)
127 CHL00149 odpA pyruvate dehydro 89.9 3.1 6.7E-05 41.3 10.7 96 91-192 158-258 (341)
128 PRK14138 NAD-dependent deacety 89.7 0.41 8.9E-06 45.1 4.2 68 295-362 171-241 (244)
129 PF02779 Transket_pyr: Transke 89.6 2.9 6.3E-05 37.2 9.5 116 67-194 49-174 (178)
130 PRK11866 2-oxoacid ferredoxin 89.5 4.2 9.1E-05 39.1 10.9 157 29-194 18-193 (279)
131 PRK05778 2-oxoglutarate ferred 89.3 5.6 0.00012 38.7 11.8 158 28-194 28-204 (301)
132 cd02750 MopB_Nitrate-R-NarG-li 89.2 0.82 1.8E-05 47.3 6.3 117 221-341 87-213 (461)
133 PRK11269 glyoxylate carboligas 89.2 4 8.7E-05 43.7 11.8 116 77-193 424-556 (591)
134 PRK09628 oorB 2-oxoglutarate-a 89.2 8.7 0.00019 36.9 12.9 156 29-194 27-202 (277)
135 PRK12753 transketolase; Review 89.1 3.3 7.3E-05 44.9 11.1 118 67-194 403-522 (663)
136 PRK06546 pyruvate dehydrogenas 88.8 6.5 0.00014 42.0 13.0 109 80-194 416-531 (578)
137 PTZ00182 3-methyl-2-oxobutanat 88.8 18 0.00039 36.1 15.3 159 22-195 30-208 (355)
138 PRK09107 acetolactate synthase 88.7 8.2 0.00018 41.4 13.7 111 78-194 436-555 (595)
139 PLN02790 transketolase 88.5 4.1 8.9E-05 44.2 11.3 117 67-194 393-513 (654)
140 PRK07979 acetolactate synthase 88.4 12 0.00026 39.9 14.7 113 77-194 426-549 (574)
141 cd03375 TPP_OGFOR Thiamine pyr 88.4 8.8 0.00019 34.7 11.8 158 27-196 8-187 (193)
142 TIGR03457 sulphoacet_xsc sulfo 88.3 8.1 0.00017 41.3 13.3 112 80-194 438-558 (579)
143 PTZ00089 transketolase; Provis 88.2 4.7 0.0001 43.8 11.4 117 67-194 404-523 (661)
144 PRK12754 transketolase; Review 88.0 4.7 0.0001 43.7 11.3 152 31-193 359-521 (663)
145 cd00368 Molybdopterin-Binding 88.0 0.42 9.1E-06 47.7 3.2 117 220-340 72-198 (374)
146 TIGR03846 sulfopy_beta sulfopy 88.0 4.8 0.0001 36.0 9.7 103 80-193 50-156 (181)
147 PTZ00408 NAD-dependent deacety 88.0 0.7 1.5E-05 43.5 4.4 68 295-362 165-235 (242)
148 cd02018 TPP_PFOR Thiamine pyro 87.9 12 0.00026 35.0 12.8 99 93-195 90-205 (237)
149 PRK08611 pyruvate oxidase; Pro 87.9 7 0.00015 41.7 12.5 111 78-194 414-531 (576)
150 TIGR03297 Ppyr-DeCO2ase phosph 87.8 23 0.00051 35.4 15.4 157 27-194 172-337 (361)
151 PRK08327 acetolactate synthase 87.7 2.4 5.1E-05 45.3 8.8 115 79-193 437-567 (569)
152 PF00676 E1_dh: Dehydrogenase 87.5 1.6 3.6E-05 42.4 6.9 105 83-193 112-225 (300)
153 PRK13012 2-oxoacid dehydrogena 87.4 24 0.00051 39.6 16.3 222 25-270 501-768 (896)
154 PRK10886 DnaA initiator-associ 87.4 4.5 9.8E-05 36.8 9.2 102 27-128 28-149 (196)
155 cd02772 MopB_NDH-1_NuoG2 MopB_ 87.2 1.5 3.4E-05 44.5 6.8 111 221-338 71-192 (414)
156 CHL00099 ilvB acetohydroxyacid 87.0 17 0.00038 38.8 15.0 159 27-194 383-556 (585)
157 TIGR01973 NuoG NADH-quinone ox 87.0 1.7 3.7E-05 46.7 7.2 115 220-341 287-406 (603)
158 PLN02374 pyruvate dehydrogenas 86.8 5 0.00011 41.1 10.1 97 90-192 223-324 (433)
159 cd01408 SIRT1 SIRT1: Eukaryoti 86.8 0.71 1.5E-05 43.3 3.7 64 295-358 168-235 (235)
160 TIGR03394 indol_phenyl_DC indo 86.6 4 8.6E-05 43.2 9.7 106 82-194 413-522 (535)
161 PRK06882 acetolactate synthase 86.6 15 0.00032 39.2 14.1 111 77-194 426-547 (574)
162 TIGR03336 IOR_alpha indolepyru 86.6 5.1 0.00011 43.0 10.6 101 94-195 425-532 (595)
163 cd02773 MopB_Res-Cmplx1_Nad11 86.5 2.8 6.1E-05 42.0 8.1 111 220-338 69-186 (375)
164 PRK09124 pyruvate dehydrogenas 86.4 14 0.00029 39.5 13.7 157 32-194 363-531 (574)
165 TIGR01591 Fdh-alpha formate de 86.4 1.2 2.7E-05 48.3 5.9 115 221-340 70-197 (671)
166 TIGR03479 DMSO_red_II_alp DMSO 86.3 3.6 7.9E-05 46.5 9.7 118 220-341 140-267 (912)
167 PLN02470 acetolactate synthase 86.3 23 0.0005 37.9 15.4 113 76-194 430-558 (585)
168 TIGR00300 conserved hypothetic 86.3 0.55 1.2E-05 46.4 2.7 101 255-363 296-405 (407)
169 PRK05333 NAD-dependent deacety 86.2 1.1 2.5E-05 43.2 4.9 68 295-363 207-278 (285)
170 TIGR02418 acolac_catab acetola 86.1 6.2 0.00013 41.7 10.9 111 77-193 413-530 (539)
171 cd03372 TPP_ComE Thiamine pyro 86.0 25 0.00053 31.3 13.8 104 80-194 50-156 (179)
172 PRK06112 acetolactate synthase 85.9 14 0.00031 39.4 13.6 133 54-194 415-561 (578)
173 cd02014 TPP_POX Thiamine pyrop 85.8 24 0.00053 31.2 14.3 110 78-193 57-173 (178)
174 PRK05899 transketolase; Review 85.7 8.5 0.00018 41.6 11.8 115 67-193 368-486 (624)
175 PRK07418 acetolactate synthase 85.6 17 0.00038 39.1 14.1 154 32-193 391-559 (616)
176 PTZ00409 Sir2 (Silent Informat 85.5 1.4 3.1E-05 42.2 5.1 68 295-364 192-264 (271)
177 cd02774 MopB_Res-Cmplx1_Nad11- 85.5 5.9 0.00013 39.7 9.8 111 221-337 71-188 (366)
178 PRK08527 acetolactate synthase 85.4 26 0.00056 37.3 15.1 112 77-194 419-539 (563)
179 TIGR03254 oxalate_oxc oxalyl-C 85.3 15 0.00032 39.0 13.2 107 81-193 426-538 (554)
180 cd03371 TPP_PpyrDC Thiamine py 85.2 9.7 0.00021 34.3 10.2 105 79-194 55-164 (188)
181 cd02767 MopB_ydeP The MopB_yde 85.2 1.5 3.3E-05 46.7 5.7 114 220-338 82-203 (574)
182 PRK08617 acetolactate synthase 85.0 15 0.00033 38.9 13.2 108 80-193 422-536 (552)
183 PRK12571 1-deoxy-D-xylulose-5- 85.0 7.3 0.00016 42.2 10.8 150 27-194 319-480 (641)
184 PRK08155 acetolactate synthase 84.8 24 0.00052 37.5 14.6 121 66-194 410-544 (564)
185 PRK05858 hypothetical protein; 84.8 3.1 6.7E-05 44.0 7.9 91 98-193 433-530 (542)
186 PRK06466 acetolactate synthase 84.6 26 0.00056 37.4 14.8 110 78-194 429-549 (574)
187 PRK07449 2-succinyl-5-enolpyru 84.6 11 0.00024 40.1 11.9 122 66-193 416-549 (568)
188 PRK05261 putative phosphoketol 84.5 21 0.00047 39.3 14.0 116 65-193 449-581 (785)
189 TIGR02720 pyruv_oxi_spxB pyruv 84.4 6.8 0.00015 41.8 10.2 93 97-194 433-533 (575)
190 PRK11869 2-oxoacid ferredoxin 84.3 21 0.00045 34.4 12.5 159 28-194 18-194 (280)
191 PRK08322 acetolactate synthase 84.3 16 0.00035 38.6 13.0 110 79-194 413-529 (547)
192 PLN02573 pyruvate decarboxylas 84.3 5.8 0.00013 42.4 9.6 109 80-193 436-552 (578)
193 PRK07525 sulfoacetaldehyde ace 84.2 5 0.00011 42.9 9.2 112 77-193 440-562 (588)
194 PRK00414 gmhA phosphoheptose i 84.0 8.3 0.00018 34.9 9.2 101 27-128 31-151 (192)
195 PRK07789 acetolactate synthase 84.0 26 0.00056 37.7 14.5 159 31-194 401-577 (612)
196 cd02753 MopB_Formate-Dh-H Form 83.9 2 4.3E-05 45.1 5.9 115 221-340 71-198 (512)
197 TIGR00118 acolac_lg acetolacta 83.9 20 0.00044 38.0 13.6 111 77-194 417-537 (558)
198 PRK06154 hypothetical protein; 83.5 27 0.00058 37.2 14.3 113 79-194 438-556 (565)
199 PRK05444 1-deoxy-D-xylulose-5- 83.4 10 0.00022 40.5 11.1 150 27-194 279-440 (580)
200 PRK06456 acetolactate synthase 83.2 3.4 7.4E-05 44.0 7.4 108 79-194 428-546 (572)
201 PRK08978 acetolactate synthase 83.0 30 0.00064 36.7 14.4 123 66-194 392-526 (548)
202 PRK06725 acetolactate synthase 82.9 19 0.0004 38.5 12.8 109 78-194 428-546 (570)
203 COG1071 AcoA Pyruvate/2-oxoglu 82.8 9.9 0.00021 37.8 9.8 118 69-191 137-259 (358)
204 PRK07710 acetolactate synthase 82.6 37 0.00079 36.2 14.9 110 77-194 429-549 (571)
205 PRK07064 hypothetical protein; 82.6 7 0.00015 41.3 9.5 93 97-193 430-528 (544)
206 CHL00144 odpB pyruvate dehydro 82.3 36 0.00078 33.5 13.7 151 27-194 4-176 (327)
207 PRK08979 acetolactate synthase 81.8 33 0.00072 36.5 14.2 109 79-194 428-547 (572)
208 cd01412 SIRT5_Af1_CobB SIRT5_A 81.5 1.9 4.2E-05 40.0 4.2 63 296-358 158-223 (224)
209 PRK07524 hypothetical protein; 81.4 23 0.0005 37.4 12.8 112 77-195 412-531 (535)
210 COG0028 IlvB Thiamine pyrophos 81.3 4.8 0.0001 42.7 7.5 94 91-194 429-532 (550)
211 PRK06048 acetolactate synthase 81.2 34 0.00074 36.3 14.1 155 32-194 370-539 (561)
212 TIGR00204 dxs 1-deoxy-D-xylulo 80.7 15 0.00032 39.6 11.1 150 27-194 310-471 (617)
213 PRK13936 phosphoheptose isomer 80.6 13 0.00029 33.6 9.3 100 28-127 31-150 (197)
214 TIGR01701 Fdhalpha-like oxidor 80.6 2.9 6.2E-05 46.1 5.8 113 220-337 117-237 (743)
215 PRK09129 NADH dehydrogenase su 80.5 7.1 0.00015 43.3 8.9 115 220-340 288-412 (776)
216 PRK06965 acetolactate synthase 80.3 48 0.001 35.5 14.9 110 78-194 443-563 (587)
217 PRK06276 acetolactate synthase 80.3 28 0.0006 37.3 13.0 111 77-193 424-543 (586)
218 cd01413 SIR2_Af2 SIR2_Af2: Arc 79.6 1.6 3.5E-05 40.5 2.9 46 295-340 164-211 (222)
219 PRK09939 putative oxidoreducta 79.4 2 4.3E-05 47.3 4.0 113 220-337 126-247 (759)
220 PRK09130 NADH dehydrogenase su 78.7 6 0.00013 43.2 7.4 110 220-337 288-404 (687)
221 cd01409 SIRT4 SIRT4: Eukaryoti 78.4 1.9 4E-05 41.1 3.0 47 295-341 197-245 (260)
222 cd01410 SIRT7 SIRT7: Eukaryoti 78.3 1.4 3.1E-05 40.3 2.2 47 295-341 148-196 (206)
223 PRK07092 benzoylformate decarb 78.2 13 0.00028 39.2 9.6 109 79-193 414-530 (530)
224 cd02766 MopB_3 The MopB_3 CD i 78.0 1.7 3.6E-05 45.6 2.9 116 220-340 74-199 (501)
225 TIGR01553 formate-DH-alph form 78.0 2.8 6.1E-05 47.7 4.8 116 221-340 125-263 (1009)
226 TIGR03393 indolpyr_decarb indo 77.8 17 0.00038 38.3 10.5 92 96-193 428-527 (539)
227 PRK12315 1-deoxy-D-xylulose-5- 77.7 19 0.00042 38.5 10.7 149 27-194 278-438 (581)
228 PRK08266 hypothetical protein; 77.6 15 0.00033 38.8 10.0 109 80-194 410-526 (542)
229 PRK08199 thiamine pyrophosphat 77.3 11 0.00024 40.0 8.8 93 97-193 440-538 (557)
230 PRK09259 putative oxalyl-CoA d 76.9 6.9 0.00015 41.7 7.2 110 79-194 431-547 (569)
231 PRK11867 2-oxoglutarate ferred 76.9 17 0.00036 35.2 9.1 161 28-196 27-205 (286)
232 PLN02582 1-deoxy-D-xylulose-5- 76.7 23 0.0005 38.6 11.0 150 27-194 356-517 (677)
233 PF13580 SIS_2: SIS domain; PD 76.7 12 0.00026 31.7 7.3 97 27-123 22-138 (138)
234 cd01411 SIR2H SIR2H: Uncharact 76.1 2 4.4E-05 39.9 2.5 46 296-341 165-211 (225)
235 PRK13937 phosphoheptose isomer 75.9 20 0.00043 32.1 8.9 102 27-128 25-146 (188)
236 PRK13761 hypothetical protein; 75.7 7 0.00015 35.9 5.7 50 220-270 52-101 (248)
237 PRK11892 pyruvate dehydrogenas 75.7 56 0.0012 33.9 13.1 145 27-189 142-309 (464)
238 cd02754 MopB_Nitrate-R-NapA-li 75.6 2.7 5.9E-05 44.7 3.7 115 220-340 71-201 (565)
239 cd03376 TPP_PFOR_porB_like Thi 75.4 50 0.0011 30.8 11.7 100 93-196 83-203 (235)
240 COG3958 Transketolase, C-termi 75.2 41 0.00088 32.4 10.8 154 26-194 6-170 (312)
241 TIGR00441 gmhA phosphoheptose 74.5 28 0.00061 30.0 9.2 98 31-128 2-119 (154)
242 PLN02269 Pyruvate dehydrogenas 73.9 24 0.00052 35.3 9.6 114 71-191 141-257 (362)
243 PRK07586 hypothetical protein; 73.6 10 0.00022 39.8 7.4 105 80-191 393-513 (514)
244 PLN02683 pyruvate dehydrogenas 73.1 97 0.0021 30.9 13.8 152 26-192 26-197 (356)
245 cd02007 TPP_DXS Thiamine pyrop 72.4 30 0.00065 31.3 9.2 88 90-191 97-188 (195)
246 PRK06457 pyruvate dehydrogenas 71.9 1.2E+02 0.0025 32.2 14.9 109 80-194 404-520 (549)
247 TIGR02177 PorB_KorB 2-oxoacid: 71.4 27 0.00058 33.8 9.0 155 29-195 12-188 (287)
248 PRK08273 thiamine pyrophosphat 70.7 82 0.0018 33.8 13.6 109 80-194 423-547 (597)
249 TIGR03186 AKGDH_not_PDH alpha- 70.2 88 0.0019 35.2 13.6 176 70-264 565-752 (889)
250 COG0846 SIR2 NAD-dependent pro 70.0 5 0.00011 37.9 3.6 67 295-363 175-246 (250)
251 cd02761 MopB_FmdB-FwdB The Mop 69.9 29 0.00064 35.0 9.6 42 222-263 222-267 (415)
252 KOG1905 Class IV sirtuins (SIR 69.3 9.8 0.00021 36.5 5.3 71 295-365 209-282 (353)
253 PRK12315 1-deoxy-D-xylulose-5- 69.3 43 0.00092 35.9 10.9 122 69-191 110-241 (581)
254 PRK13938 phosphoheptose isomer 69.1 26 0.00057 31.8 8.0 101 27-128 32-153 (196)
255 PRK09212 pyruvate dehydrogenas 68.8 1.2E+02 0.0027 29.8 13.6 151 27-194 4-176 (327)
256 cd01407 SIR2-fam SIR2 family o 68.8 3.3 7.2E-05 38.2 2.1 46 295-340 160-207 (218)
257 PLN02980 2-oxoglutarate decarb 68.7 16 0.00035 44.1 8.3 110 80-194 769-890 (1655)
258 PRK07860 NADH dehydrogenase su 68.6 9.7 0.00021 42.4 6.1 111 220-338 295-417 (797)
259 PRK11865 pyruvate ferredoxin o 68.6 56 0.0012 31.8 10.6 148 40-191 37-209 (299)
260 PRK09330 cell division protein 68.4 14 0.00031 37.2 6.6 85 220-311 83-168 (384)
261 PRK12474 hypothetical protein; 68.4 18 0.00039 38.0 7.8 106 79-191 396-517 (518)
262 cd00368 Molybdopterin-Binding 68.3 29 0.00063 34.3 9.0 88 222-317 230-321 (374)
263 cd02012 TPP_TK Thiamine pyroph 68.0 47 0.001 31.3 9.9 95 91-194 128-228 (255)
264 PLN02225 1-deoxy-D-xylulose-5- 67.2 1.2E+02 0.0026 33.2 13.7 149 27-194 381-542 (701)
265 cd02751 MopB_DMSOR-like The Mo 67.2 9.4 0.0002 41.0 5.5 120 221-341 78-220 (609)
266 cd02759 MopB_Acetylene-hydrata 67.2 4.7 0.0001 41.9 3.1 116 221-341 75-204 (477)
267 COG1915 Uncharacterized conser 67.0 1 2.2E-05 43.0 -1.6 98 261-364 301-405 (415)
268 PRK11864 2-ketoisovalerate fer 67.0 46 0.001 32.3 9.6 124 65-191 63-205 (300)
269 TIGR00853 pts-lac PTS system, 66.3 11 0.00024 29.9 4.4 33 235-267 3-35 (95)
270 COG1701 Uncharacterized protei 65.9 14 0.00031 33.5 5.4 50 220-270 54-103 (256)
271 PTZ00254 40S ribosomal protein 65.8 20 0.00043 33.8 6.6 75 222-315 55-131 (249)
272 cd02762 MopB_1 The MopB_1 CD i 64.5 12 0.00026 39.6 5.6 115 221-341 71-205 (539)
273 cd05569 PTS_IIB_fructose PTS_I 64.2 34 0.00074 27.0 6.9 77 239-337 4-82 (96)
274 PF02603 Hpr_kinase_N: HPr Ser 64.1 7.6 0.00016 32.6 3.2 48 222-272 67-114 (127)
275 COG2247 LytB Putative cell wal 63.6 19 0.00042 35.0 6.1 56 238-313 30-86 (337)
276 cd02757 MopB_Arsenate-R This C 63.4 8.6 0.00019 40.5 4.2 112 221-340 81-206 (523)
277 cd02016 TPP_E1_OGDC_like Thiam 62.7 19 0.00041 34.3 6.0 97 90-192 140-245 (265)
278 PRK13532 nitrate reductase cat 62.2 17 0.00038 40.6 6.6 42 299-340 203-250 (830)
279 COG0794 GutQ Predicted sugar p 62.1 32 0.0007 31.3 7.0 37 92-128 89-126 (202)
280 TIGR00065 ftsZ cell division p 61.9 26 0.00057 34.8 7.1 84 221-311 88-172 (349)
281 COG0552 FtsY Signal recognitio 61.1 21 0.00044 35.1 5.9 50 221-270 152-201 (340)
282 PF00766 ETF_alpha: Electron t 60.9 9.2 0.0002 29.7 2.9 64 237-312 8-73 (86)
283 PRK07282 acetolactate synthase 60.2 1.9E+02 0.004 30.8 13.7 154 32-194 373-542 (566)
284 cd05564 PTS_IIB_chitobiose_lic 60.1 19 0.00041 28.5 4.7 30 237-266 1-30 (96)
285 PLN02234 1-deoxy-D-xylulose-5- 59.6 74 0.0016 34.5 10.4 150 27-194 357-518 (641)
286 PRK12570 N-acetylmuramic acid- 59.4 30 0.00065 33.6 6.9 101 28-128 46-167 (296)
287 cd02201 FtsZ_type1 FtsZ is a G 59.3 31 0.00067 33.6 7.0 84 221-311 71-155 (304)
288 TIGR01706 NAPA periplasmic nit 59.3 20 0.00044 40.1 6.4 43 298-340 202-250 (830)
289 cd02763 MopB_2 The MopB_2 CD i 59.1 14 0.0003 40.3 4.9 112 221-340 75-197 (679)
290 TIGR01580 narG respiratory nit 59.0 24 0.00051 40.8 6.8 117 221-341 162-288 (1235)
291 cd02770 MopB_DmsA-EC This CD ( 58.7 19 0.0004 38.9 5.9 116 221-340 80-211 (617)
292 cd05007 SIS_Etherase N-acetylm 58.2 49 0.0011 31.4 8.0 101 28-128 37-158 (257)
293 PRK05441 murQ N-acetylmuramic 57.2 59 0.0013 31.6 8.5 101 28-128 50-171 (299)
294 TIGR01012 Sa_S2_E_A ribosomal 56.8 43 0.00093 30.4 6.9 76 221-315 45-121 (196)
295 PRK09628 oorB 2-oxoglutarate-a 56.1 13 0.00027 35.8 3.6 37 389-425 24-62 (277)
296 COG3142 CutC Uncharacterized p 56.1 21 0.00046 33.0 4.8 45 221-269 154-199 (241)
297 cd00296 SIR2 SIR2 superfamily 56.0 8.3 0.00018 35.4 2.3 45 296-340 163-209 (222)
298 cd02765 MopB_4 The MopB_4 CD i 55.9 32 0.00069 36.7 7.0 43 299-341 156-202 (567)
299 TIGR00274 N-acetylmuramic acid 55.6 45 0.00098 32.3 7.4 100 28-127 45-165 (291)
300 COG0541 Ffh Signal recognition 55.5 24 0.00053 35.9 5.6 52 222-273 114-165 (451)
301 PF00384 Molybdopterin: Molybd 55.4 5.1 0.00011 40.7 0.8 120 220-340 21-154 (432)
302 PRK05899 transketolase; Review 55.3 66 0.0014 34.8 9.3 93 92-194 152-249 (624)
303 cd02771 MopB_NDH-1_NuoG2-N7 Mo 55.3 25 0.00055 36.3 6.0 89 221-317 71-160 (472)
304 cd02755 MopB_Thiosulfate-R-lik 55.3 7.4 0.00016 40.2 2.0 112 221-340 76-199 (454)
305 PTZ00410 NAD-dependent SIR2; P 55.1 9.5 0.00021 37.8 2.6 43 296-338 199-242 (349)
306 cd05005 SIS_PHI Hexulose-6-pho 53.8 64 0.0014 28.4 7.6 47 221-269 19-65 (179)
307 cd05006 SIS_GmhA Phosphoheptos 53.4 1E+02 0.0022 27.0 8.9 101 28-128 21-141 (177)
308 cd02766 MopB_3 The MopB_3 CD i 53.1 64 0.0014 33.8 8.6 92 222-317 266-371 (501)
309 PRK04020 rps2P 30S ribosomal p 52.7 63 0.0014 29.5 7.4 100 222-340 52-153 (204)
310 PRK08493 NADH dehydrogenase su 52.2 19 0.00042 40.0 4.6 107 222-335 297-408 (819)
311 TIGR00509 bisC_fam molybdopter 51.9 35 0.00076 37.9 6.8 121 220-341 75-218 (770)
312 PRK05333 NAD-dependent deacety 51.9 12 0.00027 36.0 2.8 28 221-248 5-32 (285)
313 cd05565 PTS_IIB_lactose PTS_II 51.8 29 0.00062 27.8 4.5 31 237-267 2-32 (99)
314 PF04405 ScdA_N: Domain of Unk 51.7 21 0.00047 25.3 3.3 33 26-62 2-40 (56)
315 TIGR03012 sulf_tusD_dsrE sulfu 51.4 54 0.0012 27.4 6.3 87 221-309 16-127 (127)
316 cd02753 MopB_Formate-Dh-H Form 51.3 96 0.0021 32.4 9.7 96 222-317 265-386 (512)
317 cd05014 SIS_Kpsf KpsF-like pro 51.0 55 0.0012 26.8 6.4 38 91-128 49-87 (128)
318 TIGR02166 dmsA_ynfE anaerobic 50.9 41 0.00088 37.5 7.1 115 221-339 125-259 (797)
319 TIGR00644 recJ single-stranded 50.7 82 0.0018 33.4 9.0 104 221-336 40-144 (539)
320 PF07085 DRTGG: DRTGG domain; 50.7 18 0.00038 29.0 3.2 38 230-271 56-93 (105)
321 cd08193 HVD 5-hydroxyvalerate 50.4 50 0.0011 33.1 7.1 76 224-311 13-92 (376)
322 PF07287 DUF1446: Protein of u 50.1 94 0.002 31.1 8.7 44 222-265 57-100 (362)
323 KOG0081 GTPase Rab27, small G 49.8 30 0.00065 30.2 4.5 41 234-274 121-166 (219)
324 PRK10427 putative PTS system f 49.8 92 0.002 25.6 7.2 84 250-364 20-105 (114)
325 PRK09860 putative alcohol dehy 49.7 60 0.0013 32.7 7.5 76 224-311 18-97 (383)
326 COG2204 AtoC Response regulato 48.5 2.5E+02 0.0054 29.2 11.7 132 100-268 62-197 (464)
327 cd02774 MopB_Res-Cmplx1_Nad11- 47.8 21 0.00046 35.7 3.9 38 226-263 212-253 (366)
328 COG3925 N-terminal domain of t 47.8 19 0.00042 28.2 2.7 32 301-338 39-70 (103)
329 PF06711 DUF1198: Protein of u 47.6 15 0.00032 31.2 2.2 31 238-268 11-41 (148)
330 PF00731 AIRC: AIR carboxylase 47.0 39 0.00086 29.2 4.9 73 22-122 8-85 (150)
331 PRK05444 1-deoxy-D-xylulose-5- 46.9 1.3E+02 0.0029 32.1 10.0 97 92-193 142-242 (580)
332 COG1454 EutG Alcohol dehydroge 46.7 76 0.0017 31.9 7.5 43 224-266 16-60 (377)
333 PRK08285 cobH precorrin-8X met 45.7 39 0.00084 31.0 4.8 53 222-274 137-191 (208)
334 cd08185 Fe-ADH1 Iron-containin 45.4 81 0.0017 31.7 7.7 76 224-311 13-92 (380)
335 COG1707 ACT domain-containing 45.4 76 0.0016 27.9 6.2 63 222-286 126-196 (218)
336 PRK15454 ethanol dehydrogenase 45.1 73 0.0016 32.3 7.3 43 225-267 37-81 (395)
337 cd08176 LPO Lactadehyde:propan 44.9 73 0.0016 32.0 7.3 76 224-311 15-94 (377)
338 cd08194 Fe-ADH6 Iron-containin 44.9 70 0.0015 32.1 7.1 76 224-311 10-89 (375)
339 cd08178 AAD_C C-terminal alcoh 44.6 52 0.0011 33.3 6.2 74 226-311 12-87 (398)
340 cd08190 HOT Hydroxyacid-oxoaci 44.1 91 0.002 31.8 7.9 43 225-267 11-55 (414)
341 PF00465 Fe-ADH: Iron-containi 44.0 17 0.00036 36.3 2.5 75 225-311 11-87 (366)
342 TIGR02638 lactal_redase lactal 43.9 66 0.0014 32.3 6.8 76 224-311 16-95 (379)
343 cd08663 DAP_dppA_1 Peptidase M 43.4 33 0.00071 32.7 4.2 143 29-181 38-205 (266)
344 cd08175 G1PDH Glycerol-1-phosp 43.4 74 0.0016 31.5 7.0 77 225-311 11-89 (348)
345 cd08170 GlyDH Glycerol dehydro 42.8 70 0.0015 31.7 6.7 40 226-266 12-52 (351)
346 PF02146 SIR2: Sir2 family; I 42.8 21 0.00046 31.6 2.7 20 295-314 156-175 (178)
347 TIGR03127 RuMP_HxlB 6-phospho 42.6 1.1E+02 0.0024 26.7 7.4 46 222-269 17-62 (179)
348 TIGR02717 AcCoA-syn-alpha acet 42.5 4E+02 0.0087 27.4 14.9 45 224-271 389-434 (447)
349 cd05013 SIS_RpiR RpiR-like pro 42.1 50 0.0011 27.0 4.8 43 224-268 2-44 (139)
350 PRK13398 3-deoxy-7-phosphohept 42.1 58 0.0013 31.1 5.7 52 221-272 39-100 (266)
351 TIGR01162 purE phosphoribosyla 42.0 1.3E+02 0.0027 26.3 7.2 33 22-54 6-38 (156)
352 cd05009 SIS_GlmS_GlmD_2 SIS (S 41.9 46 0.00099 28.1 4.6 44 224-268 2-45 (153)
353 cd08551 Fe-ADH iron-containing 41.8 89 0.0019 31.2 7.3 76 224-311 10-89 (370)
354 cd02771 MopB_NDH-1_NuoG2-N7 Mo 41.8 46 0.001 34.4 5.4 44 222-265 252-295 (472)
355 cd02072 Glm_B12_BD B12 binding 41.6 47 0.001 27.9 4.4 40 22-62 87-128 (128)
356 cd08181 PPD-like 1,3-propanedi 41.6 93 0.002 30.9 7.4 75 225-311 14-92 (357)
357 cd02768 MopB_NADH-Q-OR-NuoG2 M 41.4 60 0.0013 32.4 6.1 38 226-263 219-259 (386)
358 cd08189 Fe-ADH5 Iron-containin 41.4 83 0.0018 31.5 7.0 75 225-311 14-92 (374)
359 cd02759 MopB_Acetylene-hydrata 41.3 84 0.0018 32.6 7.3 90 222-317 270-371 (477)
360 cd02760 MopB_Phenylacetyl-CoA- 41.2 61 0.0013 36.0 6.5 119 221-341 83-217 (760)
361 cd02772 MopB_NDH-1_NuoG2 MopB_ 41.1 31 0.00067 34.9 4.0 43 222-264 238-284 (414)
362 PRK00771 signal recognition pa 41.1 83 0.0018 32.4 7.0 49 222-270 109-157 (437)
363 PF04015 DUF362: Domain of unk 41.1 52 0.0011 29.8 5.1 85 221-311 21-112 (206)
364 PRK13018 cell division protein 40.8 62 0.0013 32.6 5.9 84 221-311 99-183 (378)
365 PRK10624 L-1,2-propanediol oxi 40.5 90 0.0019 31.4 7.1 76 224-311 17-96 (382)
366 PRK10474 putative PTS system f 40.2 1.7E+02 0.0038 22.6 7.8 82 251-362 2-84 (88)
367 cd08191 HHD 6-hydroxyhexanoate 40.2 1.3E+02 0.0028 30.3 8.2 43 225-267 11-54 (386)
368 cd08192 Fe-ADH7 Iron-containin 40.2 89 0.0019 31.2 7.0 76 224-311 11-90 (370)
369 TIGR03127 RuMP_HxlB 6-phospho 40.0 1.7E+02 0.0037 25.6 8.2 91 29-128 19-112 (179)
370 PRK10586 putative oxidoreducta 39.4 95 0.0021 31.1 7.0 70 223-311 20-95 (362)
371 PRK04175 rpl7ae 50S ribosomal 39.3 89 0.0019 26.0 5.7 45 226-270 36-80 (122)
372 COG2006 Uncharacterized conser 39.2 3.6E+02 0.0078 25.9 11.4 80 222-311 60-143 (293)
373 cd05005 SIS_PHI Hexulose-6-pho 39.0 2.3E+02 0.0051 24.7 8.9 89 30-128 23-115 (179)
374 PRK08166 NADH dehydrogenase su 39.0 43 0.00093 37.6 4.9 109 220-336 294-409 (847)
375 cd02191 FtsZ FtsZ is a GTPase 38.8 1.3E+02 0.0029 29.2 7.8 83 221-311 71-155 (303)
376 TIGR00162 conserved hypothetic 38.2 2.4E+02 0.0051 25.4 8.7 93 27-131 33-126 (188)
377 PRK05954 precorrin-8X methylmu 38.1 64 0.0014 29.5 5.0 53 221-274 130-183 (203)
378 PRK15488 thiosulfate reductase 38.1 45 0.00097 36.9 4.9 112 221-341 119-241 (759)
379 cd08186 Fe-ADH8 Iron-containin 38.0 1E+02 0.0022 31.1 7.0 75 225-311 11-93 (383)
380 PF11071 DUF2872: Protein of u 37.6 74 0.0016 26.8 4.8 43 296-339 66-112 (141)
381 TIGR03677 rpl7ae 50S ribosomal 37.5 98 0.0021 25.5 5.7 45 226-270 32-76 (117)
382 TIGR01357 aroB 3-dehydroquinat 36.9 92 0.002 30.8 6.5 41 225-266 10-50 (344)
383 PF07355 GRDB: Glycine/sarcosi 36.8 1E+02 0.0022 30.5 6.5 50 221-270 65-118 (349)
384 cd02764 MopB_PHLH The MopB_PHL 36.8 51 0.0011 34.7 4.9 110 222-335 118-241 (524)
385 cd08769 DAP_dppA_2 Peptidase M 36.7 16 0.00034 35.0 0.9 143 29-181 38-205 (270)
386 PRK05953 precorrin-8X methylmu 36.3 73 0.0016 29.2 5.0 53 221-274 128-181 (208)
387 COG1938 Archaeal enzymes of AT 36.1 3.5E+02 0.0077 25.4 9.6 115 28-164 94-208 (244)
388 PRK08286 cbiC cobalt-precorrin 36.0 78 0.0017 29.1 5.2 53 221-274 141-194 (214)
389 PRK11337 DNA-binding transcrip 35.9 1.9E+02 0.0042 27.5 8.5 94 31-128 131-227 (292)
390 COG0054 RibH Riboflavin syntha 35.6 2.1E+02 0.0045 24.8 7.4 66 34-99 35-118 (152)
391 PF03808 Glyco_tran_WecB: Glyc 35.3 1E+02 0.0022 27.1 5.9 48 222-271 87-134 (172)
392 cd08188 Fe-ADH4 Iron-containin 35.2 1.2E+02 0.0027 30.3 7.2 76 224-311 15-94 (377)
393 TIGR00829 FRU PTS system, fruc 35.0 1.9E+02 0.0041 22.3 6.6 67 250-336 15-81 (85)
394 PRK11302 DNA-binding transcrip 34.9 59 0.0013 30.9 4.6 45 222-268 115-159 (284)
395 cd06380 PBP1_iGluR_AMPA N-term 34.7 83 0.0018 31.2 5.9 60 223-286 50-109 (382)
396 PRK13602 putative ribosomal pr 34.6 1.1E+02 0.0024 23.4 5.2 44 226-270 17-60 (82)
397 PRK11382 frlB fructoselysine-6 34.4 1.7E+02 0.0038 28.8 8.0 95 31-128 33-132 (340)
398 cd08182 HEPD Hydroxyethylphosp 34.3 1.3E+02 0.0028 30.0 7.1 73 224-311 10-86 (367)
399 PRK09590 celB cellobiose phosp 34.3 41 0.00088 27.2 2.8 33 236-268 2-34 (104)
400 PRK09130 NADH dehydrogenase su 34.1 53 0.0011 36.0 4.5 38 226-263 428-469 (687)
401 PRK00207 sulfur transfer compl 34.1 1.5E+02 0.0033 24.7 6.4 87 221-309 17-128 (128)
402 PRK13600 putative ribosomal pr 33.7 1.4E+02 0.0031 23.0 5.6 46 225-271 18-63 (84)
403 cd08187 BDH Butanol dehydrogen 33.6 1.3E+02 0.0029 30.1 7.1 40 227-266 19-60 (382)
404 COG2086 FixA Electron transfer 33.5 74 0.0016 30.3 4.9 44 228-271 103-146 (260)
405 COG3383 Uncharacterized anaero 33.2 67 0.0015 35.1 4.9 45 297-341 415-464 (978)
406 PRK06264 cbiC precorrin-8X met 33.2 92 0.002 28.6 5.2 53 221-274 136-189 (210)
407 cd01822 Lysophospholipase_L1_l 33.1 1.6E+02 0.0034 25.2 6.8 50 221-270 86-142 (177)
408 PF13380 CoA_binding_2: CoA bi 33.0 69 0.0015 26.2 4.1 40 30-70 68-107 (116)
409 cd08183 Fe-ADH2 Iron-containin 33.0 1.5E+02 0.0032 29.7 7.3 71 225-311 11-84 (374)
410 PF07905 PucR: Purine cataboli 32.7 1.2E+02 0.0026 25.0 5.5 49 223-271 59-107 (123)
411 TIGR03405 Phn_Fe-ADH phosphona 32.6 81 0.0018 31.4 5.3 35 225-260 14-48 (355)
412 cd06348 PBP1_ABC_ligand_bindin 32.5 1.1E+02 0.0024 29.6 6.3 59 223-284 54-112 (344)
413 PF12804 NTP_transf_3: MobA-li 32.2 3.1E+02 0.0066 23.1 10.6 95 27-124 24-124 (160)
414 cd02755 MopB_Thiosulfate-R-lik 32.1 3.2E+02 0.0069 28.0 9.8 92 222-316 266-371 (454)
415 PF02006 DUF137: Protein of un 31.8 55 0.0012 28.8 3.3 35 234-269 3-37 (178)
416 cd02769 MopB_DMSOR-BSOR-TMAOR 31.8 43 0.00093 36.0 3.4 43 299-341 167-222 (609)
417 cd06351 PBP1_iGluR_N_LIVBP_lik 31.8 1.1E+02 0.0025 29.0 6.2 62 223-287 50-113 (328)
418 TIGR01501 MthylAspMutase methy 31.2 3.3E+02 0.0071 23.1 9.0 75 29-124 17-91 (134)
419 PRK02399 hypothetical protein; 31.0 5.8E+02 0.013 26.0 13.2 181 28-248 199-387 (406)
420 PRK09404 sucA 2-oxoglutarate d 31.0 1.8E+02 0.0038 33.1 8.0 95 91-191 343-446 (924)
421 PRK00481 NAD-dependent deacety 30.9 44 0.00095 31.3 2.9 25 224-248 2-26 (242)
422 KOG2682 NAD-dependent histone 30.6 75 0.0016 29.6 4.2 65 301-366 211-282 (314)
423 PRK05575 cbiC precorrin-8X met 30.5 1E+02 0.0023 28.1 5.1 52 222-274 136-188 (204)
424 COG1737 RpiR Transcriptional r 30.5 3.7E+02 0.008 25.7 9.3 93 31-128 121-217 (281)
425 PLN02522 ATP citrate (pro-S)-l 30.4 5.9E+02 0.013 27.5 11.4 146 27-196 177-340 (608)
426 PRK14974 cell division protein 30.2 1.3E+02 0.0029 29.7 6.2 48 221-268 153-200 (336)
427 TIGR00679 hpr-ser Hpr(Ser) kin 30.0 95 0.0021 30.2 5.0 46 223-271 69-114 (304)
428 COG0243 BisC Anaerobic dehydro 29.9 1.2E+02 0.0027 33.5 6.7 39 300-338 197-242 (765)
429 COG0021 TktA Transketolase [Ca 29.8 3.8E+02 0.0083 28.9 9.7 153 27-192 357-520 (663)
430 COG0041 PurE Phosphoribosylcar 29.8 1.2E+02 0.0027 26.3 5.1 74 25-122 13-87 (162)
431 PRK14990 anaerobic dimethyl su 29.6 1.5E+02 0.0032 33.2 7.2 115 222-339 141-276 (814)
432 TIGR01501 MthylAspMutase methy 29.5 1E+02 0.0022 26.2 4.6 27 34-61 103-129 (134)
433 PRK13601 putative L7Ae-like ri 29.3 1.6E+02 0.0035 22.6 5.3 43 227-270 15-57 (82)
434 PF02570 CbiC: Precorrin-8X me 29.3 88 0.0019 28.4 4.4 53 221-274 128-181 (198)
435 cd01020 TroA_b Metal binding p 29.3 1.3E+02 0.0027 28.5 5.8 48 220-268 190-237 (264)
436 PF01248 Ribosomal_L7Ae: Ribos 29.2 1.1E+02 0.0024 23.6 4.6 46 225-270 20-65 (95)
437 PF01113 DapB_N: Dihydrodipico 29.2 68 0.0015 26.5 3.5 45 223-270 78-122 (124)
438 TIGR02693 arsenite_ox_L arseni 28.7 1.9E+02 0.0041 32.4 7.8 20 298-317 216-235 (806)
439 PRK11867 2-oxoglutarate ferred 28.6 45 0.00097 32.2 2.6 29 396-424 28-62 (286)
440 PF10686 DUF2493: Protein of u 28.6 2.1E+02 0.0046 21.2 5.7 45 223-268 18-62 (71)
441 PRK10892 D-arabinose 5-phospha 28.6 3.4E+02 0.0073 26.4 8.9 93 32-128 38-134 (326)
442 PRK11070 ssDNA exonuclease Rec 28.5 3E+02 0.0065 29.5 8.9 84 221-314 55-139 (575)
443 cd03415 CbiX_CbiC Archaeal sir 28.4 76 0.0016 26.5 3.6 26 238-263 2-27 (125)
444 COG0156 BioF 7-keto-8-aminopel 28.2 1E+02 0.0022 31.2 5.2 64 237-311 172-239 (388)
445 PRK09129 NADH dehydrogenase su 28.2 75 0.0016 35.3 4.6 46 222-267 456-505 (776)
446 TIGR00161 conserved hypothetic 28.0 5E+02 0.011 24.2 9.8 86 27-127 93-178 (238)
447 PRK05428 HPr kinase/phosphoryl 27.9 1.1E+02 0.0023 30.0 4.9 49 222-273 68-116 (308)
448 PRK11557 putative DNA-binding 27.8 4.1E+02 0.009 25.0 9.2 92 32-128 120-215 (278)
449 COG0191 Fba Fructose/tagatose 27.8 1.1E+02 0.0025 29.3 5.1 50 222-271 28-83 (286)
450 PRK14994 SAM-dependent 16S rib 27.8 2.6E+02 0.0056 27.0 7.6 90 221-310 70-170 (287)
451 PRK15482 transcriptional regul 27.8 1E+02 0.0023 29.4 5.0 46 221-268 121-166 (285)
452 PF13167 GTP-bdg_N: GTP-bindin 27.6 63 0.0014 25.7 2.8 56 250-310 8-65 (95)
453 COG0825 AccA Acetyl-CoA carbox 27.4 82 0.0018 30.3 4.0 44 235-278 105-165 (317)
454 PRK03692 putative UDP-N-acetyl 27.3 1.6E+02 0.0034 27.7 5.9 43 225-269 146-188 (243)
455 PRK08166 NADH dehydrogenase su 27.2 94 0.002 35.0 5.2 41 222-262 480-520 (847)
456 PF07454 SpoIIP: Stage II spor 27.2 1.6E+02 0.0035 28.1 6.0 51 24-74 107-168 (268)
457 TIGR00789 flhB_rel flhB C-term 27.2 81 0.0018 24.3 3.3 36 236-275 16-53 (82)
458 PRK11557 putative DNA-binding 27.0 1.1E+02 0.0023 29.1 4.9 45 222-268 115-159 (278)
459 cd02756 MopB_Arsenite-Ox Arsen 26.9 1.9E+02 0.0041 31.6 7.2 20 299-318 220-239 (676)
460 PRK01018 50S ribosomal protein 26.9 1.8E+02 0.0039 23.1 5.4 42 227-269 23-64 (99)
461 cd01821 Rhamnogalacturan_acety 26.7 1.8E+02 0.0039 25.6 6.2 49 221-269 92-152 (198)
462 cd05710 SIS_1 A subgroup of th 26.7 1.2E+02 0.0025 24.8 4.5 38 91-128 49-87 (120)
463 COG1440 CelA Phosphotransferas 26.5 1.8E+02 0.0039 23.4 5.2 53 236-308 2-54 (102)
464 COG0279 GmhA Phosphoheptose is 26.5 4.6E+02 0.0099 23.3 8.5 99 27-126 28-147 (176)
465 PF04312 DUF460: Protein of un 26.2 1.1E+02 0.0024 26.1 4.1 42 225-269 65-106 (138)
466 cd02758 MopB_Tetrathionate-Ra 26.2 74 0.0016 35.2 4.0 84 253-339 162-256 (735)
467 PF04951 Peptidase_M55: D-amin 26.1 7.7 0.00017 36.9 -3.1 143 30-182 39-206 (265)
468 cd05006 SIS_GmhA Phosphoheptos 26.0 1.3E+02 0.0028 26.4 5.0 41 221-262 15-59 (177)
469 PRK15138 aldehyde reductase; P 25.9 1.5E+02 0.0033 29.8 6.0 36 224-259 18-54 (387)
470 TIGR01868 casD_Cas5e CRISPR sy 25.9 56 0.0012 30.5 2.6 35 253-287 128-162 (230)
471 COG1737 RpiR Transcriptional r 25.8 1.2E+02 0.0025 29.2 4.9 96 221-336 116-213 (281)
472 TIGR00239 2oxo_dh_E1 2-oxoglut 25.8 2E+02 0.0043 32.7 7.2 98 90-191 343-447 (929)
473 cd08171 GlyDH-like2 Glycerol d 25.7 1.7E+02 0.0036 28.9 6.2 41 225-266 11-52 (345)
474 cd06259 YdcF-like YdcF-like. Y 25.6 2.2E+02 0.0048 23.9 6.2 46 220-265 18-66 (150)
475 PRK05749 3-deoxy-D-manno-octul 25.6 4.1E+02 0.0089 26.7 9.2 64 239-312 265-329 (425)
476 cd06344 PBP1_ABC_ligand_bindin 25.5 1.5E+02 0.0034 28.5 5.9 60 224-286 54-113 (332)
477 PRK06683 hypothetical protein; 25.5 1.9E+02 0.0041 22.2 5.1 43 227-270 18-60 (82)
478 COG2021 MET2 Homoserine acetyl 25.4 1.2E+02 0.0027 30.2 5.0 39 227-265 297-335 (368)
479 KOG3954 Electron transfer flav 25.2 2.6E+02 0.0056 26.7 6.7 119 227-364 202-335 (336)
480 cd06338 PBP1_ABC_ligand_bindin 24.8 1.5E+02 0.0033 28.6 5.7 60 224-286 59-119 (345)
481 COG0846 SIR2 NAD-dependent pro 24.8 62 0.0013 30.6 2.7 39 225-277 2-40 (250)
482 PRK05583 ribosomal protein L7A 24.8 2E+02 0.0043 23.1 5.3 43 227-270 24-66 (104)
483 PRK11543 gutQ D-arabinose 5-ph 24.8 5E+02 0.011 25.0 9.3 92 32-128 33-129 (321)
484 PRK10886 DnaA initiator-associ 24.8 1.2E+02 0.0026 27.4 4.5 45 223-268 25-78 (196)
485 PF09936 Methyltrn_RNA_4: SAM- 24.8 2.2E+02 0.0049 25.5 6.0 64 225-307 90-157 (185)
486 PF02302 PTS_IIB: PTS system, 24.7 75 0.0016 24.2 2.8 32 237-268 1-33 (90)
487 cd06578 HemD Uroporphyrinogen- 24.7 3.8E+02 0.0082 24.0 8.1 61 25-85 80-142 (239)
488 PRK14071 6-phosphofructokinase 24.7 1.8E+02 0.0039 29.1 6.1 41 29-69 95-135 (360)
489 PRK08811 uroporphyrinogen-III 24.7 2.4E+02 0.0053 26.7 6.9 98 27-124 99-228 (266)
490 PRK05782 bifunctional sirohydr 24.6 1.4E+02 0.003 29.6 5.2 54 220-274 264-317 (335)
491 cd06368 PBP1_iGluR_non_NMDA_li 24.5 1.8E+02 0.004 27.7 6.2 49 224-276 51-99 (324)
492 cd05015 SIS_PGI_1 Phosphogluco 24.4 4.5E+02 0.0099 22.5 9.4 92 30-124 7-118 (158)
493 PRK06091 membrane protein FdrA 24.4 8.8E+02 0.019 25.8 17.1 47 27-73 203-260 (555)
494 KOG0369 Pyruvate carboxylase [ 24.3 6E+02 0.013 27.8 9.8 127 30-188 95-231 (1176)
495 TIGR03129 one_C_dehyd_B formyl 24.3 1.3E+02 0.0029 30.2 5.3 42 222-263 228-273 (421)
496 cd06347 PBP1_ABC_ligand_bindin 24.3 1.9E+02 0.0042 27.6 6.3 46 224-272 55-100 (334)
497 TIGR02055 APS_reductase thiore 24.1 2.3E+02 0.005 25.3 6.3 84 229-317 9-107 (191)
498 PRK07714 hypothetical protein; 23.9 2.3E+02 0.005 22.4 5.5 42 227-269 25-66 (100)
499 PRK00002 aroB 3-dehydroquinate 23.8 2.3E+02 0.005 28.1 6.8 42 225-267 19-62 (358)
500 TIGR00114 lumazine-synth 6,7-d 23.8 1.4E+02 0.003 25.4 4.4 28 31-58 20-51 (138)
No 1
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-76 Score=613.24 Aligned_cols=381 Identities=26% Similarity=0.381 Sum_probs=320.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+|+++|+|++.|+++||++|||+||+.+++|+|+|.++ +||+|+||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 47899999999999999999999999999999999986 8999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCC-
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES- 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~- 183 (431)
++||++|+.|++|||+||||+++...+++ .+| -.|+..+++++|||++++.+++++++.+++||+.|.++|
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~-----afQ---e~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrp 151 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTD-----AFQ---EVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRP 151 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcc-----hhh---hcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988887 333 348999999999999999999999999999999999975
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+.....+..... ....+. ..+. +++++++++|++||||+|++|+|+.++++.+++++|+|+++
T Consensus 152 Gpv~i~iP~Dv~~~~~~~~~~~~~~~-~~~~p~-~~~~-~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~ 228 (550)
T COG0028 152 GPVVVDLPKDVLAAEAEEPGPEPAIL-PPYRPA-PPPP-EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLG 228 (550)
T ss_pred ceEEEEcChhHhhccccccccccccc-ccCCCC-CCcH-HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHC
Confidence 99999999999885322211111111 111111 1122 78999999999999999999999999999999999999999
Q ss_pred CCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 264 ~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
+||++|++|||++|++||+++|+. |+.|+..+++++++||+||++|+||+++.++ |..|.++.++||||+|+.+++ +
T Consensus 229 ~Pv~~t~~gkg~~p~~hp~~lG~~-g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~-k 305 (550)
T COG0028 229 APVVTTLMGKGAVPEDHPLSLGML-GMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIG-K 305 (550)
T ss_pred CCEEEccCcCccCCCCCccccccc-cccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhC-C
Confidence 999999999999999999999995 9988888999999999999999999999987 776665544999999999998 5
Q ss_pred Ccccc----ccHHHHHHHHHHHhccc-cchhhhh---hhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 344 PSLGW----VFMADFLSALAKKLRKN-TTALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
++..+ .|++.+|++|.+.+... ..|+.+. ++.+..... ........+|+++++.|++.+++|+|+++|+|
T Consensus 306 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G 383 (550)
T COG0028 306 NYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLAL--EELADDGIKPQYVIKVLRELLPDDAIVVTDVG 383 (550)
T ss_pred CCCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhh--hccCCCccCHHHHHHHHHHhCCCCeEEEeCCc
Confidence 54444 29999999999988753 2222222 111111111 11122223899999999999999999999999
Q ss_pred hhhhhccc
Q 014091 416 DSWFNCQK 423 (431)
Q Consensus 416 ~~~~~~~~ 423 (431)
++..|..+
T Consensus 384 ~~~~w~a~ 391 (550)
T COG0028 384 QHQMWAAR 391 (550)
T ss_pred HHHHHHHH
Confidence 99998653
No 2
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=2.2e-74 Score=606.30 Aligned_cols=405 Identities=84% Similarity=1.363 Sum_probs=334.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
+.++++|+|++.|+++||+||||+||+++++|+++|.++.+|++|.||||++|+||||||+|+||+|||++|+|||++|+
T Consensus 14 ~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~n~ 93 (578)
T PLN02573 14 SDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSV 93 (578)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHHHH
Confidence 55899999999999999999999999999999999965457999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++||.|++|||+|+|++++...+++..+||.+...++.++.++|+++|||+.++++++++++.+++|++.|+++||
T Consensus 94 ~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~g 173 (578)
T PLN02573 94 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKESK 173 (578)
T ss_pred HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998888887778887654455677899999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+.....+.+....+......+.++.+++++++|++||||+|++|.|++++++.+++++|||++++
T Consensus 174 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~ 253 (578)
T PLN02573 174 PVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADASGY 253 (578)
T ss_pred CEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCC
Confidence 99999999997743211111111111111111123456789999999999999999999999988999999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+|+|++.|..+++.+++++++||+||++|++++++++.+|+.+.++.++||||.|+.++++..
T Consensus 254 PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~ 333 (578)
T PLN02573 254 PVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGP 333 (578)
T ss_pred CEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcc
Confidence 99999999999999999999997688899999999999999999999999988877765556788999999999997322
Q ss_pred ccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 345 ~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
.....+++++|++|++.+..+...+..|++.............+.+|++.++++.|++.+++|+|++.|+|++++....+
T Consensus 334 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~~~~~~~~ 413 (578)
T PLN02573 334 AFGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQKL 413 (578)
T ss_pred eECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccchhhHHhc
Confidence 23334789999999998865322222332211111110111123469999999999999999999999999985434566
Q ss_pred ccCCC
Q 014091 425 RLPEN 429 (431)
Q Consensus 425 ~~p~g 429 (431)
++|.+
T Consensus 414 ~~~~~ 418 (578)
T PLN02573 414 KLPEG 418 (578)
T ss_pred cCCCC
Confidence 67654
No 3
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=4.8e-73 Score=554.83 Aligned_cols=400 Identities=39% Similarity=0.628 Sum_probs=359.7
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
+.+|+++||+++|.+.||+++||+||+++++|+|.+...+++|||.|.||.+|+||||||||+.|++++++|.|+|.+.+
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||+.+|++++|||+|+|.+++..+.+++++||++|+++|..+.+|+++++.....+++.+.++..|+|+++.++..++
T Consensus 82 ~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~R 161 (557)
T COG3961 82 LNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRR 161 (557)
T ss_pred hcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||.||.|+...+ +..+. .|.......+++....+.++.++++|+++|||+|++|..+.+.+..+++.+|++++++
T Consensus 162 PvYI~lP~dva~~~--~~~p~-~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~ 238 (557)
T COG3961 162 PVYIGLPADVADLP--IEAPL-TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGF 238 (557)
T ss_pred CeEEEcchHHhcCc--CCCCC-CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCC
Confidence 99999999997743 32221 2332333345556677899999999999999999999999999999999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
|+++++||||+|+|.||.|+|+|+|..+.+.++++++.|||||.+|+.+++++|++|+..++..++|+++.+...+. ..
T Consensus 239 p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~~ 317 (557)
T COG3961 239 PVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-DA 317 (557)
T ss_pred CeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998778889999999999997 67
Q ss_pred ccccccHHHHHHHHHHHhccccchh--hhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcc
Q 014091 345 SLGWVFMADFLSALAKKLRKNTTAL--ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (431)
Q Consensus 345 ~~~~~d~~~~L~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~ 422 (431)
.+..+.++++|+.|++.+..+.... .++.... + .......+.+|++..+|++++.+|.++++|++|.|+++|++.
T Consensus 318 ~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~-p--~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~ 394 (557)
T COG3961 318 VFTNLSMKDALQELAKKIDKRNLSAPPVAYPART-P--PTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGAL 394 (557)
T ss_pred ccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCC-C--CCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccce
Confidence 7777899999999999888765311 1111111 1 111234556799999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 014091 423 KLRLPENCG 431 (431)
Q Consensus 423 ~~~~p~g~~ 431 (431)
+++||+|++
T Consensus 395 ~~~lP~~~~ 403 (557)
T COG3961 395 DIRLPKGAT 403 (557)
T ss_pred eeecCCCCe
Confidence 999999985
No 4
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=2.1e-71 Score=585.15 Aligned_cols=387 Identities=17% Similarity=0.212 Sum_probs=317.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (431)
+|+++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+| | +|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 578999999999999999999999999999999997655899999999999999999999999 8 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++ .+ |..|+..+|+++|||++++++++++++.|++|++.|.++
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~ 153 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 153 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998865554 22 235889999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++.++.+.......+. +... +.+.++.+++++++|++||||+|++|.|+.++++.++|.+|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~--~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 229 (588)
T TIGR01504 154 PGPVLIDLPFDVQVAEIEFDPDTYEPL--PVYK--PAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELT 229 (588)
T ss_pred CCeEEEEeCcchhhcccCCcccccccc--cCCC--CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHh
Confidence 599999999999874322110000011 1111 122467899999999999999999999999989999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCC-CCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGA-VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~-~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
++||+||++|||+||++||+++|++ |. .+++.+++++++||+||+||++++++.+.+|..+.++.++||||.|+.+++
T Consensus 230 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~ 308 (588)
T TIGR01504 230 GVPVIPTLMGWGCIPDDHELMAGMV-GLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG 308 (588)
T ss_pred CCCeEEcCccCCCCCCCChhhCcCC-CCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc
Confidence 9999999999999999999999997 55 467888899999999999999999888777766667778999999999997
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccc----c-chhhhhh----hccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKN----T-TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~----~-~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ 408 (431)
+++..+ .|++.+|++|.+.+... . ..+..|. +...... ......+.+++|..++++|++.|++|+
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~p~~~~~~l~~~l~~d~ 386 (588)
T TIGR01504 309 -RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLL-RKTHFDNVPVKPQRVYEEMNKAFGRDV 386 (588)
T ss_pred -CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCc-ccccCCCCCcCHHHHHHHHHHhCCCCC
Confidence 444333 38999999998876421 0 0111221 1100000 001123346999999999999999999
Q ss_pred EEEecCChhhhhcc-ccccC
Q 014091 409 AVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 409 ivv~D~G~~~~~~~-~~~~p 427 (431)
+++.|+|++.+|.. +++++
T Consensus 387 ivv~D~G~~~~~~~~~~~~~ 406 (588)
T TIGR01504 387 CYVTTIGLSQIAGAQMLHVY 406 (588)
T ss_pred EEEECCcHHHHHHHHhcccc
Confidence 99999999988654 44443
No 5
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-71 Score=584.47 Aligned_cols=392 Identities=19% Similarity=0.239 Sum_probs=319.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 4789999999999999999999999999999999976557999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|++++...+++ .+ |..|+..+|+++|||+.++++++++++.+++|++.|+++ +
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGND-----AF---QECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRP 154 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998766554 22 235889999999999999999999999999999999997 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+.+.....+.+.......+...+.++.+++++++|++||||+|++|.|++++++.++|++|+|+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 234 (572)
T PRK08979 155 GPVVIDLPKDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLN 234 (572)
T ss_pred CcEEEecCHhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 99999999999764321100001111011000101224568999999999999999999999998899999999999999
Q ss_pred CCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 264 ~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
+||+||++|||+||++||+|+|++ |..++..+++++++||+||+||++++++.+..|..+.++.++||||.|+.+++ +
T Consensus 235 ~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (572)
T PRK08979 235 LPVVSTLMGLGAFPGTHKNSLGML-GMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS-K 312 (572)
T ss_pred CCEEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 88899999999999999999999999888777766667788999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhcccc---------chhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 014091 344 PSLGW----VFMADFLSALAKKLRKNT---------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~iv 410 (431)
++..+ .|++.+|++|++.+..+. .|.+++...+...... ......+|++.+++++|++.+++|+++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv 391 (572)
T PRK08979 313 TVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA-YDKSSERIKPQQVIETLYKLTNGDAYV 391 (572)
T ss_pred ccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh-ccCCCCCcCHHHHHHHHHHhcCCCeEE
Confidence 44333 389999999988775421 1111111111000000 011234699999999999999999999
Q ss_pred EecCChhhhhc-cccccCC
Q 014091 411 IAETGDSWFNC-QKLRLPE 428 (431)
Q Consensus 411 v~D~G~~~~~~-~~~~~p~ 428 (431)
+.|+|++.+|. .++.++.
T Consensus 392 v~d~G~~~~~~~~~~~~~~ 410 (572)
T PRK08979 392 ASDVGQHQMFAALYYPFDK 410 (572)
T ss_pred EECCcHHHHHHHHhcCcCC
Confidence 99999987664 4555543
No 6
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7.3e-71 Score=581.02 Aligned_cols=393 Identities=18% Similarity=0.234 Sum_probs=319.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 4789999999999999999999999999999999975457999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|+.++...+++. ++ ..|+..+++++|||+.++++++++++.|++|++.|.++ +
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDA-----FQ---ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRP 154 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCC-----Cc---eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999988766542 22 35889999999999999999999999999999999997 4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++....+.....+.+.......+...++++.+++++++|++||||+|++|.|++++++.++|++|+|+++
T Consensus 155 GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~ 234 (574)
T PRK07979 155 GPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLN 234 (574)
T ss_pred CcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhC
Confidence 99999999999763211110001110011000111234678999999999999999999999998889999999999999
Q ss_pred CCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 264 ~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.++.|..+.++.++||||.|+.+++ +
T Consensus 235 ~pv~tt~~gkg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (574)
T PRK07979 235 LPVVSSLMGLGAFPATHRQSLGML-GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS-K 312 (574)
T ss_pred CCEEEccccCCCCCCCCcccccCC-cCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999996 88899999999999999999999999888776666667778999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhcccc-----chhhhhhh---ccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 344 PSLGW----VFMADFLSALAKKLRKNT-----TALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
++..+ .|++.+|++|++.+.... .....|.+ .+.............+|++..++++|++.+++|++++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv 392 (574)
T PRK07979 313 TVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT 392 (574)
T ss_pred cccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhcCCCEEEE
Confidence 44333 389999999988775321 01112211 0000000001112346999999999999999999999
Q ss_pred ecCChhhhhc-cccccCC
Q 014091 412 AETGDSWFNC-QKLRLPE 428 (431)
Q Consensus 412 ~D~G~~~~~~-~~~~~p~ 428 (431)
.|+|++..|. .++.+++
T Consensus 393 ~d~G~~~~~~~~~~~~~~ 410 (574)
T PRK07979 393 SDVGQHQMFAALYYPFDK 410 (574)
T ss_pred eCCcHHHHHHHHhcccCC
Confidence 9999987664 4555544
No 7
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=8.1e-71 Score=579.06 Aligned_cols=391 Identities=19% Similarity=0.243 Sum_probs=320.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
++++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+||||||+|+|| +|||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 46789999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++ .++ ..|+..+++++|||++++++++++++.+++|++.|+++
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~ 159 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKD-----AFQ---EADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGR 159 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCC-----Ccc---ccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988866654 222 24788999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.......+... .. +...+.++.+++++++|++|+||+|++|.|++++++.+++++|||++
T Consensus 160 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l 237 (566)
T PRK07282 160 PGPVVIDLPKDVSALETDFIYDPEVNLPS-YQ-PTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERY 237 (566)
T ss_pred CCeEEEeCChhhhhhhhcccccccccccC-CC-CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHh
Confidence 59999999999986432110000011100 01 11123456799999999999999999999999889999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
++||+||++|||+||++||+++|++ |..++...++++++||+||+||++++++.++.+..+.++.++||||.|+.+++
T Consensus 238 ~~pv~tt~~gkg~ip~~hpl~~G~~-G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~- 315 (566)
T PRK07282 238 QIPVVTTLLGQGTIATSHPLFLGMG-GMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG- 315 (566)
T ss_pred CCCEEeccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999995 88888899999999999999999999888766665667788999999999997
Q ss_pred CCcccc----ccHHHHHHHHHHHhcccc--c-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKNT--T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
+++..+ .|++.+|++|++.+..+. . |..++.+...... .......++++..++++|++.++++++++.|+|
T Consensus 316 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G 393 (566)
T PRK07282 316 KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVR--SYDKKERVVQPQAVIERIGELTNGDAIVVTDVG 393 (566)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhch--hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCc
Confidence 433333 389999999998875432 1 1122111110000 011123469999999999999999999999999
Q ss_pred hhhhh-ccccccCCC
Q 014091 416 DSWFN-CQKLRLPEN 429 (431)
Q Consensus 416 ~~~~~-~~~~~~p~g 429 (431)
++.+| ...+.++++
T Consensus 394 ~~~~~~~~~~~~~~~ 408 (566)
T PRK07282 394 QHQMWAAQYYPYQNE 408 (566)
T ss_pred HHHHHHHHhcccCCC
Confidence 99877 445655543
No 8
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=2.5e-70 Score=533.46 Aligned_cols=406 Identities=58% Similarity=0.943 Sum_probs=368.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
..++++++|+++|.+.||++|||+||+.++.|+|-|+..+++|||.|+||.+|||+||||||..|+++|++|.|+|.+.+
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSA 81 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhh
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++|++.||++++|||+|+|.+++..++++++|||++|++||..+.+|++.++.++..+++.+++++.||+|++.|....+
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||.||.|+...+.+.....+.|....+.++++....+.++.++++|.++++|+|++|.-+++.++.++..+|+++++.
T Consensus 162 PVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~ 241 (561)
T KOG1184|consen 162 PVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGF 241 (561)
T ss_pred CeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCC
Confidence 99999999998765444433344555556666666677899999999999999999999999999999999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
|++.|+||||.+||+||+|.|+|+|..+.+.+.+.++.||+||.+|+.++++++.+|+..++..++|+++.|...+. ..
T Consensus 242 p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~ 320 (561)
T KOG1184|consen 242 PVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NA 320 (561)
T ss_pred CeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999997 67
Q ss_pred ccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 345 ~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
.|..++++.+|+.|++.++.+...+..+.+....+..+....+..+++...++++++..+.+++++++|+|.|||..+++
T Consensus 321 ~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~ 400 (561)
T KOG1184|consen 321 TFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQT 400 (561)
T ss_pred cccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceee
Confidence 88889999999999999987765444343333222222233445569999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014091 425 RLPENCG 431 (431)
Q Consensus 425 ~~p~g~~ 431 (431)
+||.||+
T Consensus 401 ~fP~g~~ 407 (561)
T KOG1184|consen 401 KFPKGCG 407 (561)
T ss_pred ccccccc
Confidence 9999984
No 9
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.6e-70 Score=577.61 Aligned_cols=392 Identities=20% Similarity=0.281 Sum_probs=317.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
.+++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| ++||++|+|||++|
T Consensus 19 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N 98 (587)
T PRK06965 19 ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTN 98 (587)
T ss_pred hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 34789999999999999999999999999999999976557999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|+.++...+++ .++ ..|+..+|+++|||++++++++++.+.|++|++.|+++
T Consensus 99 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~q---~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~ 170 (587)
T PRK06965 99 AVTGIATAYMDSIPMVVISGQVPTAAIGQD-----AFQ---ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGR 170 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998866654 222 35889999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+...+.+.+. ....+. ..+.++.+++++++|++||||+|++|.|++++++.+++++|+|++
T Consensus 171 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 248 (587)
T PRK06965 171 PGPVVVDIPKDVSKTPCEYEYPKSVEM-RSYNPV-TKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLL 248 (587)
T ss_pred CCeEEEEeChhhhhChhccccCccccc-cCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHh
Confidence 599999999999864321101111111 000111 122467899999999999999999999999889999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCC-CcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~I~Id~d~~~~~ 341 (431)
|+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.++++..+.+ +.++||||.|+.+++
T Consensus 249 g~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 327 (587)
T PRK06965 249 GYPVTNTLMGLGAYPASDKKFLGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSIS 327 (587)
T ss_pred CCCEEEccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhC
Confidence 9999999999999999999999996 88899999999999999999999998887655544443 478999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc-----chhhhhhh---ccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT-----TALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~i 409 (431)
+.+..+ .|++++|++|++.+.... .....|.+ .+.............+|++..+++.|++.+++|+|
T Consensus 328 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~i 406 (587)
T PRK06965 328 -KRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDGDAF 406 (587)
T ss_pred -CcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCCCeE
Confidence 433332 389999999998775321 01112211 00000000001123469999999999999999999
Q ss_pred EEecCChhhhhcc-ccccCC
Q 014091 410 VIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 410 vv~D~G~~~~~~~-~~~~p~ 428 (431)
++.|+|++..|.. +++++.
T Consensus 407 i~~d~G~~~~~~~~~~~~~~ 426 (587)
T PRK06965 407 VCSDVGQHQMWAAQFYRFNE 426 (587)
T ss_pred EEeCCcHHHHHHHHhcccCC
Confidence 9999999987644 455543
No 10
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.6e-70 Score=574.88 Aligned_cols=389 Identities=19% Similarity=0.238 Sum_probs=318.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.++++|+|++.|+++||+||||+||+++++|+++|.+ ++|++|.||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 92 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNL 92 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 5889999999999999999999999999999999976 47999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|++++...+++ .+ +..|+..+++++|||++++++++++.+.|++|++.|+++ +
T Consensus 93 ~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 164 (570)
T PRK06725 93 VTGLADAYMDSIPLVVITGQVATPLIGKD-----GF---QEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRP 164 (570)
T ss_pred HHHHHHHhhcCcCEEEEecCCCcccccCC-----CC---cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998866554 22 235889999999999999999999999999999999997 4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+.+.......+ ..+......++++.+++++++|++||||+|++|.|+.++++.++|.+|||+++
T Consensus 165 GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~ 242 (570)
T PRK06725 165 GPVLIDIPKDVQNEKVTSFYNEVVE--IPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENR 242 (570)
T ss_pred CcEEEccccchhhcccccccCcccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhC
Confidence 9999999999986432110110000 00000111234568999999999999999999999998899999999999999
Q ss_pred CCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 264 ~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
+||+||++|||+||++||+++|++ |..++...++++++|||||++|++++++.++.+..+.++.++||||.|+.+++ .
T Consensus 243 ~PV~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 320 (570)
T PRK06725 243 IPVVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH-K 320 (570)
T ss_pred CCEEECCccCcCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC-C
Confidence 999999999999999999999996 88889999999999999999999999888766655566778999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhcccc-c-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChh
Q 014091 344 PSLGW----VFMADFLSALAKKLRKNT-T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~ 417 (431)
++..+ .|+..+|++|++.+.... . +...+........ ........++++..+++.|++.+|+|+|++.|+|++
T Consensus 321 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~ 399 (570)
T PRK06725 321 NVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYP-LSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQH 399 (570)
T ss_pred CCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhCh-hhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcHH
Confidence 44333 389999999998775421 1 1111111100000 000112346999999999999999999999999999
Q ss_pred hhhcc-ccccCC
Q 014091 418 WFNCQ-KLRLPE 428 (431)
Q Consensus 418 ~~~~~-~~~~p~ 428 (431)
.+|.. ++.++.
T Consensus 400 ~~~~~~~~~~~~ 411 (570)
T PRK06725 400 QMWAAHFYKAKN 411 (570)
T ss_pred HHHHHHhccccC
Confidence 77643 444443
No 11
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.9e-70 Score=576.46 Aligned_cols=393 Identities=20% Similarity=0.282 Sum_probs=317.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
++++++++|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34789999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++. + |..|+..+|+++|||++++.+++++.+.+++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~ 153 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDA-----F---QETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGR 153 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCc-----c---cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988665542 2 235889999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++....+.....+.+.......+...+.++.+++++++|.+||||+|++|.|++++++.++|++|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 233 (574)
T PRK06466 154 PGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLL 233 (574)
T ss_pred CCcEEEEcCHhHhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHh
Confidence 59999999999965311110000100000000010112356799999999999999999999999888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
++||++|++|||+||++||+++|++ |..++...++++++||+||++|++++++.+.+|..+.++.++||||.|+.+++
T Consensus 234 g~pv~tt~~~kg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~- 311 (574)
T PRK06466 234 NLPVTNTLMGLGGFPGTDRQFLGML-GMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASIS- 311 (574)
T ss_pred CCCEEEcCccCCCCCCCChhhcCCC-ccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88888899999999999999999999888777765666778999999999997
Q ss_pred CCcccc----ccHHHHHHHHHHHhcccc-----chhhhhh----hccCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~----~~~~~~~~-~~~~~~~~~l~~~~~~~~L~~~l~~~~ 408 (431)
.++..+ .|++.+|++|++.+.... ..+..|. ........ ......+.+++|..+++.|++.+++|+
T Consensus 312 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ 391 (574)
T PRK06466 312 KTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNGDA 391 (574)
T ss_pred CccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCCCe
Confidence 443333 389999999988775321 0111221 11100000 001112346999999999999999999
Q ss_pred EEEecCChhhhhcc-ccccC
Q 014091 409 AVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 409 ivv~D~G~~~~~~~-~~~~p 427 (431)
|++.|+|++..|.. .+.++
T Consensus 392 iv~~d~g~~~~~~~~~~~~~ 411 (574)
T PRK06466 392 YVTSDVGQHQMFAAQYYKFN 411 (574)
T ss_pred EEEECCcHHHHHHHHhcccc
Confidence 99999999876644 44444
No 12
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=5.8e-70 Score=577.49 Aligned_cols=410 Identities=21% Similarity=0.282 Sum_probs=330.1
Q ss_pred ccccCCCCCCCCCCCCC--CCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhh
Q 014091 6 AMGSTGQPGSAPAPVRG--GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADG 83 (431)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~g 83 (431)
+-.|..+|-.+|..+.+ .+.+++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adg 87 (612)
T PRK07789 8 AAASAAPPPAAPAARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEG 87 (612)
T ss_pred hhhccCCCCCCccccccccccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHH
Confidence 34455666666665532 3456899999999999999999999999999999999976568999999999999999999
Q ss_pred hhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEc
Q 014091 84 YARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (431)
Q Consensus 84 yar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v 162 (431)
|+|+|| ++||++|+|||++|+++||++||.+++|||+|+|+.++...+++ .+ |..|+..+|+++|||++++
T Consensus 88 yar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v 159 (612)
T PRK07789 88 YAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTD-----AF---QEADIVGITMPITKHNFLV 159 (612)
T ss_pred HHHHhCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----cC---cccchhhhhhcceeEEEEc
Confidence 999999 99999999999999999999999999999999999998866554 22 2358999999999999999
Q ss_pred CCcchHHHHHHHHHHHhhhC-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEE
Q 014091 163 NNLGDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLV 241 (431)
Q Consensus 163 ~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~ 241 (431)
++++++++.+++|++.|+++ +|||||+||.|++..+.+.......+.. ...+. ..+.++.+++++++|.+||||+|+
T Consensus 160 ~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~-~~~~~-~~p~~~~i~~~~~~L~~AkrPlIl 237 (612)
T PRK07789 160 TDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLP-GYRPV-TKPHGKQIREAAKLIAAARRPVLY 237 (612)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccccCcccccc-CCCCC-CCCCHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999987 5999999999997743211101000110 00110 123456799999999999999999
Q ss_pred eCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCccccccc
Q 014091 242 GGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY 321 (431)
Q Consensus 242 ~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~ 321 (431)
+|.|+.++++.+++++|+|++|+||+||++|||+||++||+++|++ |..++..+++++++|||||++|+++++..+..+
T Consensus 238 ~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~ 316 (612)
T PRK07789 238 VGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMP-GMHGTVAAVAALQRSDLLIALGARFDDRVTGKL 316 (612)
T ss_pred ECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCC-cccCcHHHHHHHHhCCEEEEECCCCCccccCCh
Confidence 9999998899999999999999999999999999999999999996 888888899999999999999999988777655
Q ss_pred ccCCCCcceEEEccCceeecCCCcccc----ccHHHHHHHHHHHhcccc-----chhhhhh----hccCCCCCCCCCCCC
Q 014091 322 SLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQN 388 (431)
Q Consensus 322 ~~~~~~~~~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~ 388 (431)
..+.++.++||||.|+.+++ .++..+ .|++.+|++|++.+.... ..+.+|. +.+...........+
T Consensus 317 ~~~~~~~~~i~Id~d~~~i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 395 (612)
T PRK07789 317 DSFAPDAKVIHADIDPAEIG-KNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSD 395 (612)
T ss_pred hhcCCCCcEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccC
Confidence 55667788999999999887 443333 389999999998875421 1112221 111000000111123
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcc-ccccC
Q 014091 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 389 ~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~-~~~~p 427 (431)
.++++..++++|++.++++++++.|+|++..|.. ++.++
T Consensus 396 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~ 435 (612)
T PRK07789 396 GSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYE 435 (612)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccC
Confidence 5699999999999999999999999999977654 44443
No 13
>PLN02470 acetolactate synthase
Probab=100.00 E-value=4.8e-70 Score=575.68 Aligned_cols=396 Identities=18% Similarity=0.249 Sum_probs=320.4
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccE
Q 014091 14 GSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGA 92 (431)
Q Consensus 14 ~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv 92 (431)
||-+.|+ .+++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||+|+|| +||
T Consensus 4 ~~~~~~~----~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 4 QSRFAPD----EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred ccCCCCC----ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 5677888 56899999999999999999999999999999999976557999999999999999999999999 999
Q ss_pred EEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHH
Q 014091 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELI 172 (431)
Q Consensus 93 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i 172 (431)
|++|+|||++|+++||++||.+++|||+|+|++++...+++ .+ |..|+..+++++|||++++.+++++++.|
T Consensus 80 ~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~i~~~l 151 (585)
T PLN02470 80 CIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTD-----AF---QETPIVEVTRSITKHNYLVMDVEDIPRVI 151 (585)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCC-----cC---cccchhhhhhhheEEEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999999998866554 22 23578999999999999999999999999
Q ss_pred HHHHHHhhhCC-CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhch
Q 014091 173 DTAISTALKES-KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251 (431)
Q Consensus 173 ~~A~~~A~~~~-GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a 251 (431)
++|++.|.++| |||||+||.|++..+.......+.+...........+.++.+++++++|++||||+|++|.|+. ++
T Consensus 152 ~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a 229 (585)
T PLN02470 152 REAFFLASSGRPGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NS 229 (585)
T ss_pred HHHHHHhcCCCCCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hh
Confidence 99999999975 9999999999976431110001111000000001123466899999999999999999999996 47
Q ss_pred HHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceE
Q 014091 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAI 331 (431)
Q Consensus 252 ~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I 331 (431)
.+++++|+|++++||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..|..+.+..++|
T Consensus 230 ~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I 308 (585)
T PLN02470 230 SEELREFVELTGIPVASTLMGLGAFPASDELSLQML-GMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIV 308 (585)
T ss_pred HHHHHHHHHHhCCCEEEccCccccCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEE
Confidence 899999999999999999999999999999999996 8888889999999999999999999888776665566677899
Q ss_pred EEccCceeecCCCcccc----ccHHHHHHHHHHHhcccc---chhhhhh----hccCCCCCCCCCCCCCCcCHHHHHHHH
Q 014091 332 IVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT---TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHI 400 (431)
Q Consensus 332 ~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~L 400 (431)
|||.|+.+++ +++..+ .|++.+|++|++.+.... .....|. +........ ......+|++..+++.|
T Consensus 309 ~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l 386 (585)
T PLN02470 309 HIDIDPAEIG-KNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLS-YPTFGDAIPPQYAIQVL 386 (585)
T ss_pred EEECCHHHhC-CCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhc-ccCCCCCcCHHHHHHHH
Confidence 9999999997 444333 389999999998776421 0111221 111000000 01112469999999999
Q ss_pred HhhCCCCCEEEecCChhhhhcc-cccc
Q 014091 401 QDMLSGDTAVIAETGDSWFNCQ-KLRL 426 (431)
Q Consensus 401 ~~~l~~~~ivv~D~G~~~~~~~-~~~~ 426 (431)
++.+++|+|++.|+|++..|.. ++.+
T Consensus 387 ~~~~~~d~iv~~d~G~~~~~~~~~~~~ 413 (585)
T PLN02470 387 DELTDGNAIISTGVGQHQMWAAQWYKY 413 (585)
T ss_pred HhhCCCCEEEEECCcHHHHHHHHhccc
Confidence 9999999999999999987644 4444
No 14
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=1.7e-69 Score=564.74 Aligned_cols=385 Identities=26% Similarity=0.394 Sum_probs=312.5
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHH
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (431)
+++|+|++.|+++||++|||+||+++++|++++.+..+|++|.||||++|+||||||+|+|| +|||++|+|||.+|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 57899999999999999999999999999999986544999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcE
Q 014091 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv 186 (431)
||++||.+++|||+|+|++++...+++..+||..+ +..||..+|+++|||+.++.+++++++.+++|++.|+++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv 158 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPV 158 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeecc--chHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999887777766665432 2446889999999999999999999999999999999988999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
||+||.|++..+.+ .....+ ..+....+.++.+++++++|++||||+|++|.|+.++++.++|++|||++|+||
T Consensus 159 ~i~iP~Dv~~~~~~--~~~~~~----~~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 159 YLEIPRDMVNAEVE--PVPDDP----AWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232 (535)
T ss_pred EEEechhhccCccC--CCCCCC----CCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCE
Confidence 99999999874322 111111 111122335678999999999999999999999998899999999999999999
Q ss_pred EecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCcc
Q 014091 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (431)
Q Consensus 267 ~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~ 346 (431)
+||++|||+||++||+++|++.|..+++..++++++|||||+||++++++++..+..+.++.++||||.|+.+++ .++.
T Consensus 233 ~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 311 (535)
T TIGR03394 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVY 311 (535)
T ss_pred EEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeE
Confidence 999999999999999999977788899999999999999999999998876533333445679999999999997 5555
Q ss_pred ccccH---HHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCC--CEEEecCChhhhhc
Q 014091 347 GWVFM---ADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD--TAVIAETGDSWFNC 421 (431)
Q Consensus 347 ~~~d~---~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~--~ivv~D~G~~~~~~ 421 (431)
.++.+ ..+|.+|++.+...... .+........ ........+++|..++++|++.++++ +++++|+|++.+|+
T Consensus 312 ~~~~i~d~~~~L~~l~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~ 388 (535)
T TIGR03394 312 ADIPLAGLVDALLALLCGLPPSDRT--TRGKGPHAYP-RGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTA 388 (535)
T ss_pred CCccHHHHHHHHHHhhhcccccccc--cccccccccc-cccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHH
Confidence 55544 44455554433211110 1110000000 00011234699999999999999876 46999999998887
Q ss_pred ccc
Q 014091 422 QKL 424 (431)
Q Consensus 422 ~~~ 424 (431)
.++
T Consensus 389 ~~~ 391 (535)
T TIGR03394 389 MDM 391 (535)
T ss_pred Hhc
Confidence 655
No 15
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.9e-70 Score=575.54 Aligned_cols=392 Identities=19% Similarity=0.292 Sum_probs=318.4
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
+++|++|+|++.|+++||+||||+||+++++|+++|.+.++|++|.||||++|+||||||+|+|| +|||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 45899999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++ .+ +..|+..+++++|||++++++++++++.|++|++.|+++
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~ 160 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSD-----AF---QECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGR 160 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCC-----CC---cccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998766554 22 235889999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhc--hHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK--AQKAFIELAD 260 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~--a~~~l~~lae 260 (431)
+|||||+||.|++..+.+...+...+......+ ...++++.+++++++|++||||+|++|.|+.+++ +.+++++|+|
T Consensus 161 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae 239 (595)
T PRK09107 161 PGPVVVDIPKDVQFATGTYTPPQKAPVHVSYQP-KVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVE 239 (595)
T ss_pred CceEEEecCCChhhcccccccccccccccCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHH
Confidence 599999999999764211111111110001011 1123456899999999999999999999998775 8999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~ 340 (431)
++|+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..|..+.++.++||||.|+.++
T Consensus 240 ~lg~pv~tt~~gkg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i 318 (595)
T PRK09107 240 LTGFPITSTLMGLGAYPASGKNWLGML-GMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSI 318 (595)
T ss_pred HHCCCEEECccccccCCCCCCcccCCC-CCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 999999999999999999999999996 8888999999999999999999999988876666666778899999999998
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhcccc-----chhhhhh----hccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC-C
Q 014091 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS-G 406 (431)
Q Consensus 341 ~~~~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~-~ 406 (431)
+ .++..+ .|++.+|++|++.+.... .....|. +........ ......++++..+++.|++.++ +
T Consensus 319 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~l~~~ 396 (595)
T PRK09107 319 N-KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLA-YTPSDDVIMPQYAIQRLYELTKGR 396 (595)
T ss_pred C-CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHHhCCCC
Confidence 7 443333 389999999988775321 0111221 111000000 0112346999999999999997 5
Q ss_pred CCEEEecCChhhhhcc-ccccCC
Q 014091 407 DTAVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 407 ~~ivv~D~G~~~~~~~-~~~~p~ 428 (431)
|.+++.|+|++.+|.. ++++++
T Consensus 397 d~iv~~d~G~~~~~~~~~~~~~~ 419 (595)
T PRK09107 397 DTYITTEVGQHQMWAAQFFGFEE 419 (595)
T ss_pred CeEEEECCcHHHHHHHHhcccCC
Confidence 8899999999977744 555543
No 16
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=5.4e-70 Score=578.15 Aligned_cols=386 Identities=23% Similarity=0.275 Sum_probs=318.1
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCc
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (431)
.++++++++|++.|+++||+||||+||+++++|+++|.+. .+|++|.+|||++|+|||+||+|+|| +|||++|+||
T Consensus 16 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~GP 95 (616)
T PRK07418 16 PQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGP 95 (616)
T ss_pred CccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCc
Confidence 3568999999999999999999999999999999999742 36999999999999999999999999 9999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHh
Q 014091 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A 179 (431)
|++|+++||++|+.|++|||+|+|+.++...+++ .++ ..|+..+|+++|||++++.+++++++.|++|++.|
T Consensus 96 G~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-----~~Q---e~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A 167 (616)
T PRK07418 96 GATNLVTGIATAQMDSVPMVVITGQVPRPAIGTD-----AFQ---ETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIA 167 (616)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876664 232 25789999999999999999999999999999999
Q ss_pred hhCC-CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHH
Q 014091 180 LKES-KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (431)
Q Consensus 180 ~~~~-GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~l 258 (431)
+++| |||||+||.|++..+.+.....+.....+.......+.++++++++++|++||||+|++|.|++++++.++|++|
T Consensus 168 ~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~l 247 (616)
T PRK07418 168 SSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKEL 247 (616)
T ss_pred hcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHH
Confidence 9875 999999999998643221100000000000000012356789999999999999999999999988899999999
Q ss_pred HHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCce
Q 014091 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 259 ae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~ 338 (431)
||++++||++|++|||+||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.
T Consensus 248 ae~l~~pV~tt~~gkg~~p~~hpl~~G~~-G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 326 (616)
T PRK07418 248 AERFQIPVTTTLMGKGAFDEHHPLSVGML-GMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPA 326 (616)
T ss_pred HHHHCCCEEEccCCCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHH
Confidence 99999999999999999999999999995 88899999999999999999999999887766655666788999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhcccc-----c-hh---hhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 014091 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT-----T-AL---ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (431)
Q Consensus 339 ~~~~~~~~~~----~d~~~~L~~L~~~l~~~~-----~-~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~ 405 (431)
+++ +++..+ .|++.+|++|++.+.... . |. ..|++... . .......+|+|..++++|++.++
T Consensus 327 ~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~v~~~l~~~~~ 401 (616)
T PRK07418 327 EVG-KNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYP--L--VVPPYEGEIYPQEVLLAVRDLAP 401 (616)
T ss_pred HhC-CccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCc--c--cccCCCCCcCHHHHHHHHHhhCC
Confidence 997 444333 399999999998875422 1 11 11211110 0 01122357999999999999998
Q ss_pred CCCEEEecCChhhhhcccc
Q 014091 406 GDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 406 ~~~ivv~D~G~~~~~~~~~ 424 (431)
+++++.|+|++.+|..++
T Consensus 402 -d~i~~~D~G~~~~~~~~~ 419 (616)
T PRK07418 402 -DAYYTTDVGQHQMWAAQF 419 (616)
T ss_pred -CcEEEECChHHHHHHHHh
Confidence 699999999998887644
No 17
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=1.5e-69 Score=572.44 Aligned_cols=387 Identities=18% Similarity=0.228 Sum_probs=316.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (431)
.|+++++|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+| | +|||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 379999999999999999999999999999999997656899999999999999999999999 9 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++|+++||.+++|||+|+|++++...+++ .+ |..||..+|+++|||+.++++++++++.|++|++.|+++
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~ 154 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGR 154 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999998866554 22 335899999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.......+ .... .+.+.++.+++++++|++||||+|++|.|+.++++.+++++|+|++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (591)
T PRK11269 155 PGPVLIDLPFDVQVAEIEFDPDTYEP--LPVY--KPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELT 230 (591)
T ss_pred CCeEEEEeChhhhhcccccccccccc--cccC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHh
Confidence 49999999999976432111111001 1111 1123456899999999999999999999999888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCC-CCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGA-VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~-~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
++||+||++|||+||++||+++|++ |. .+...+++++++||+||+||++++++.+..|..+.++.++||||.|+.+++
T Consensus 231 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~ 309 (591)
T PRK11269 231 GVPVIPTLMGWGAIPDDHPLMAGMV-GLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIG 309 (591)
T ss_pred CCCeEecccccCcCCCCChhhccCC-cCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhC
Confidence 9999999999999999999999996 55 367778889999999999999999888766665666778999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccc-------c--chhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKN-------T--TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ 408 (431)
+++..+ .|++++|++|.+.+... + .|...+........ ......+.++++..++++|++.+++|+
T Consensus 310 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~d~ 387 (591)
T PRK11269 310 -RVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLL-RKTHFDNVPIKPQRVYEEMNKAFGRDT 387 (591)
T ss_pred -CCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhch-hhccCCCCCcCHHHHHHHHHHhcCCCc
Confidence 433333 38999999998877431 1 11112211110000 001112346999999999999999999
Q ss_pred EEEecCChhhhhc-cccccC
Q 014091 409 AVIAETGDSWFNC-QKLRLP 427 (431)
Q Consensus 409 ivv~D~G~~~~~~-~~~~~p 427 (431)
+++.|+|++.+|. .+++++
T Consensus 388 ivv~d~g~~~~~~~~~~~~~ 407 (591)
T PRK11269 388 CYVSTIGLSQIAAAQFLHVY 407 (591)
T ss_pred EEEECCcHHHHHHHHhcccC
Confidence 9999999987764 344444
No 18
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=5.2e-69 Score=562.96 Aligned_cols=389 Identities=34% Similarity=0.513 Sum_probs=319.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHH
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 107 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~g 107 (431)
|++|+|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+||||||+|+||+|||++|+|||++|+++|
T Consensus 2 t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~g 81 (539)
T TIGR03393 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAING 81 (539)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhhH
Confidence 78999999999999999999999999999999976568999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEE
Q 014091 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~ 187 (431)
|++||.+++|||+|+|++++...+++..+|+.++...+.+..++++++|||+..+ +++++++.+++|++.|.+.+||||
T Consensus 82 la~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~gPv~ 160 (539)
T TIGR03393 82 IAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPGY 160 (539)
T ss_pred HHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999998877777777777666544556689999999999877 789999999999999999889999
Q ss_pred EEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 188 ISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 188 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
|+||.|++..+ ...+. .+.............++.+++++++|++||||+|++|.|++++++.++|.+|||++++||+
T Consensus 161 l~iP~Dv~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~ 237 (539)
T TIGR03393 161 LMLPVDVAAKA--VTPPV-NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHA 237 (539)
T ss_pred EEecccccCCc--cCCCC-cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEE
Confidence 99999998743 21111 1111101111112234568999999999999999999999988899999999999999999
Q ss_pred ecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCccc
Q 014091 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLG 347 (431)
Q Consensus 268 tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~ 347 (431)
||++|||+||++||+++|++.|..+++.+++++++||+||++|++++++.+.+|...++..++||||+|+.+++ .++..
T Consensus 238 tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~~ 316 (539)
T TIGR03393 238 TLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWFT 316 (539)
T ss_pred ECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEeC
Confidence 99999999999999999998777788889999999999999999999888766653233468999999999987 44333
Q ss_pred c---ccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 348 W---VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 348 ~---~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
+ .|+..+|++|++.+... |...... +... ......+|++..+++.|++.++++++++.|+|++.++..++
T Consensus 317 ~~~i~D~~~~l~~l~~~l~~~---~~~~~~~--~~~~--~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~ 389 (539)
T TIGR03393 317 GIPMNDAIETLVELCEHAGLM---WSSSGAI--PFPQ--PDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAADL 389 (539)
T ss_pred CcCHHHHHHHHHHHhhhcccc---ccccccc--CcCC--CCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhc
Confidence 3 37788888888766421 1111000 1000 11122369999999999999999999999999998666666
Q ss_pred ccCC
Q 014091 425 RLPE 428 (431)
Q Consensus 425 ~~p~ 428 (431)
.++.
T Consensus 390 ~~~~ 393 (539)
T TIGR03393 390 RLPA 393 (539)
T ss_pred cCCC
Confidence 6654
No 19
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-69 Score=570.58 Aligned_cols=389 Identities=20% Similarity=0.261 Sum_probs=318.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.++++++|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999976568999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|++++...+++ .+ +..|+..+++++|||+.++++++++.+.|++|++.|+++ |
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~ 153 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTD-----AF---QEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRP 153 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765543 22 235889999999999999999999999999999999997 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+.+...+.+.+.. ...+. ..+.++.+++++++|++||||+|++|.|++++++.++|++|+|+++
T Consensus 154 GPV~l~iP~Dv~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~ 231 (563)
T PRK08527 154 GPVHIDIPKDVTATLGEFEYPKEISLK-TYKPT-YKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTG 231 (563)
T ss_pred CcEEEEcCHhHhhhhhccccccccccc-cCCCC-CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 999999999997642111011111110 00110 1124568999999999999999999999998899999999999999
Q ss_pred CCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 264 ~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
+||+||++|||+||++||+++|++ |..++...++++++||+||+||+++++..+..|..+.++.++||||.|+.+++ .
T Consensus 232 ~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 309 (563)
T PRK08527 232 IPAVETLMARGVLRSDDPLLLGML-GMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS-K 309 (563)
T ss_pred CCEEEccccCCCCCCCChhhcCCC-cccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999995 88899999999999999999999999888767766667788999999999887 3
Q ss_pred Ccccc----ccHHHHHHHHHHHhcccc-chhhhhh----hccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 014091 344 PSLGW----VFMADFLSALAKKLRKNT-TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~ 414 (431)
++..+ .|++++|++|++.+.... .....|. +.+..... ......++|+|..++++|++.+++++|++.|+
T Consensus 310 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~ 388 (563)
T PRK08527 310 IVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPL-SYEDSDEVLKPQWVIERVGELLGDDAIISTDV 388 (563)
T ss_pred CCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCcc-cccCCCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 33222 399999999998875431 1111221 11100000 01112347999999999999999999999999
Q ss_pred Chhhhhcc-ccccC
Q 014091 415 GDSWFNCQ-KLRLP 427 (431)
Q Consensus 415 G~~~~~~~-~~~~p 427 (431)
|++.+|.. ++.++
T Consensus 389 g~~~~~~~~~~~~~ 402 (563)
T PRK08527 389 GQHQMWVAQFYPFN 402 (563)
T ss_pred cHHHHHHHHhcccC
Confidence 99887754 44443
No 20
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.8e-69 Score=568.20 Aligned_cols=389 Identities=21% Similarity=0.276 Sum_probs=318.4
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
+.++++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||+|+|| ++||++|+|||++|
T Consensus 11 ~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 90 (564)
T PRK08155 11 KRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATN 90 (564)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHH
Confidence 34689999999999999999999999999999999976668999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++...+++ .+ |..|+..+|+++|||++++++++++++.+++|++.|.++
T Consensus 91 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 162 (564)
T PRK08155 91 LVTAIADARLDSIPLVCITGQVPASMIGTD-----AF---QEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGR 162 (564)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCcccccCC-----Cc---cccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998766554 22 235889999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.. ..+.+. . ... ...++++.+++++++|++||||+|++|.|++++++.+++++|||++
T Consensus 163 ~GPV~i~iP~Dv~~~~~~~~-~~~~~~-~-~~~-~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 238 (564)
T PRK08155 163 PGPVWIDIPKDVQTAVIELE-ALPAPA-E-KDA-APAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKA 238 (564)
T ss_pred CCcEEEEcCHhHHhhhcccc-cCCCcc-c-cCC-CCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHH
Confidence 59999999999976432111 111111 0 000 1123456799999999999999999999999888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
++||+||++|||+||++||+++|++ |..+....++++++||+||++|++++++.+..+..+.++.++||||.|+.+++
T Consensus 239 ~~pv~tt~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~- 316 (564)
T PRK08155 239 QLPTTMTLMALGMLPKAHPLSLGML-GMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG- 316 (564)
T ss_pred CCCEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999997 77788889999999999999999999887766655667788999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhcccc-c-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCh
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKNT-T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~ 416 (431)
+.+..+ .|++++|++|++.+.... . |.+++.......... ......++++..+++.|++.+|+|++++.|+|+
T Consensus 317 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~ 395 (564)
T PRK08155 317 KIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCP-IPKADDPLSHYGLINAVAACVDDNAIITTDVGQ 395 (564)
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhh-cccCCCCcCHHHHHHHHHHhCCCCeEEEECCch
Confidence 433333 389999999988775422 1 222221111000000 111234799999999999999999999999999
Q ss_pred hhhh-ccccccCC
Q 014091 417 SWFN-CQKLRLPE 428 (431)
Q Consensus 417 ~~~~-~~~~~~p~ 428 (431)
+..| ..++++++
T Consensus 396 ~~~~~~~~~~~~~ 408 (564)
T PRK08155 396 HQMWTAQAYPLNR 408 (564)
T ss_pred HHHHHHHhccccC
Confidence 8776 44555554
No 21
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2.7e-69 Score=567.70 Aligned_cols=389 Identities=20% Similarity=0.298 Sum_probs=317.7
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
++++++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.||||++|+||||||+|+|| ++||++|+|||.+|
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n 84 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATN 84 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 55899999999999999999999999999999999975 58999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++ .+ +..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 85 ~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~ 156 (561)
T PRK06048 85 LVTGIATAYMDSVPIVALTGQVPRSMIGND-----AF---QEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGR 156 (561)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998866554 22 225889999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+...+...+. ....+. ..++.+.+++++++|++||||+|++|.|++++++.+++++|||++
T Consensus 157 ~GPV~l~iP~dv~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~l 234 (561)
T PRK06048 157 PGPVLIDLPKDVTTAEIDFDYPDKVEL-RGYKPT-YKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETI 234 (561)
T ss_pred CCeEEEecChhhhhcccccccCccccc-ccCCCC-CCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHh
Confidence 599999999999764321100110111 000111 123456899999999999999999999999889999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
++||+||++|||+||++||+++|++ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 235 g~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~- 312 (561)
T PRK06048 235 PAPVTTTLMGIGAIPTEHPLSLGML-GMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEIS- 312 (561)
T ss_pred CCCEEEccccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88889999999999999999999999887766665667788999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccccc--hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCh
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKNTT--ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~ 416 (431)
.++..+ .|++++|++|++.+..... +.+.+.......... ......++++..++++|++.+| +++++.|+|+
T Consensus 313 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~ 390 (561)
T PRK06048 313 KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLK-YKEREDVIKPQYVIEQIYELCP-DAIIVTEVGQ 390 (561)
T ss_pred CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHhhCC-CcEEEEcCcH
Confidence 444333 3899999999998764321 211111111000000 0112346999999999999998 7999999999
Q ss_pred hhhhcc-ccccCC
Q 014091 417 SWFNCQ-KLRLPE 428 (431)
Q Consensus 417 ~~~~~~-~~~~p~ 428 (431)
+.+|.. ++.++.
T Consensus 391 ~~~~~~~~~~~~~ 403 (561)
T PRK06048 391 HQMWAAQYFKYKY 403 (561)
T ss_pred HHHHHHHhcccCC
Confidence 877644 444443
No 22
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=3.2e-69 Score=568.86 Aligned_cols=387 Identities=22% Similarity=0.270 Sum_probs=313.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhc---CCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcch
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (431)
+++++++|++.|+++||+||||+||+++++|+++|.+ +++|++|.||||++|+||||||+|+|| +|||++|+|||+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 80 (572)
T PRK06456 1 MPTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGT 80 (572)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCH
Confidence 4679999999999999999999999999999999964 246999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 181 (431)
+|+++||++||.+++|||+|+|++++...+++. + |..|+..+|+++|||+.++++++++++.+++|++.|++
T Consensus 81 ~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~ 152 (572)
T PRK06456 81 TNLVTGLITAYWDSSPVIAITGQVPRSVMGKMA-----F---QEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATT 152 (572)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCCccccCCCC-----c---cccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988666542 2 23588999999999999999999999999999999999
Q ss_pred C-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 182 E-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 182 ~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
+ +|||||+||.|++..+.+.......+......+....++++.+++++++|++|+||+|++|.|++++++.+++++|+|
T Consensus 153 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae 232 (572)
T PRK06456 153 GRPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAE 232 (572)
T ss_pred CCCCcEEEecChhHhhcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHH
Confidence 7 599999999999874322110000010000011011234568999999999999999999999998889999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCC-CcceEEEccCcee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVT 339 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~I~Id~d~~~ 339 (431)
++++||+||++|||+||++||+++|++ |..++...++++++||+||++|++++++.+..|..+.+ ..++||||+|+.+
T Consensus 233 ~~~~pv~tt~~gkg~i~~~hp~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 311 (572)
T PRK06456 233 LLHIPIVSTFPGKTAIPHDHPLYFGPM-GYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTD 311 (572)
T ss_pred HhCCCEEEcCccCcCCCCCCccccccC-CCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHH
Confidence 999999999999999999999999996 88888888899999999999999999888766655543 6789999999998
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhcccc-----c-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 014091 340 VGNGPSLGW----VFMADFLSALAKKLRKNT-----T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (431)
Q Consensus 340 ~~~~~~~~~----~d~~~~L~~L~~~l~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~i 409 (431)
++ .++..+ .|++.+|++|.+.+.... . |...+.................++++..++++|++.++++++
T Consensus 312 ~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 390 (572)
T PRK06456 312 GE-KAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAI 390 (572)
T ss_pred hC-CccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEE
Confidence 86 433322 389999999988775321 1 111111111000000001123369999999999999999999
Q ss_pred EEecCChhhhhcc
Q 014091 410 VIAETGDSWFNCQ 422 (431)
Q Consensus 410 vv~D~G~~~~~~~ 422 (431)
++.|+|++.+|..
T Consensus 391 i~~d~g~~~~~~~ 403 (572)
T PRK06456 391 VTTGVGQHQMWAE 403 (572)
T ss_pred EEECCcHHHHHHH
Confidence 9999999988754
No 23
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=3.3e-69 Score=568.90 Aligned_cols=389 Identities=21% Similarity=0.273 Sum_probs=315.4
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcc
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVG 100 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG 100 (431)
++++++++|++.|+++||++|||+||+++++|+++|.+. ++|++|.||||++|+||||||+|+|| +|||++|+|||
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T CHL00099 8 REKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPG 87 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 448899999999999999999999999999999999642 24999999999999999999999999 99999999999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
.+|+++||++||.+++|||+|+|++++...+++. + +..|+..+++++|||+.++.+++++++.+++|++.|.
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 159 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDA-----F---QEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAK 159 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCCC-----c---cccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999887665542 2 2357889999999999999999999999999999999
Q ss_pred hC-CCcEEEEEccCCCCCCCCCCCCCCCC--ccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHH
Q 014091 181 KE-SKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (431)
Q Consensus 181 ~~-~GPv~l~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~ 257 (431)
++ +|||||+||.|++..+.+.....+.. ...........+.++.+++++++|++||||+|++|.|++++++.++|++
T Consensus 160 ~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 239 (585)
T CHL00099 160 HGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITE 239 (585)
T ss_pred cCCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHH
Confidence 87 59999999999976432111110000 0011100111235678999999999999999999999998899999999
Q ss_pred HHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCc
Q 014091 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (431)
Q Consensus 258 lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~ 337 (431)
|+|++++||+||++|||+||++||+|+|++ |..++..+++++++|||||++|++++++.++.|..+.++.++||||.|+
T Consensus 240 lae~lg~PV~tt~~~kg~~~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 318 (585)
T CHL00099 240 LAELYKIPVTTTLMGKGIFDEDHPLCLGML-GMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDP 318 (585)
T ss_pred HHHHHCCCEEEccccCcCCCCCCCcccCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCH
Confidence 999999999999999999999999999995 8888888999999999999999999988776665556677899999999
Q ss_pred eeecCCCcccc----ccHHHHHHHHHHHhccccc-----hhhhhhh---ccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 014091 338 VTVGNGPSLGW----VFMADFLSALAKKLRKNTT-----ALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (431)
Q Consensus 338 ~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~ 405 (431)
.+++ +++.++ .|++.+|++|++.+..... ....|.+ .+.............+|++..++++|++.++
T Consensus 319 ~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 397 (585)
T CHL00099 319 AEIG-KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAP 397 (585)
T ss_pred HHhC-CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCC
Confidence 9887 444333 3899999999987763210 0112211 1100000001112357999999999999999
Q ss_pred CCCEEEecCChhhhhcccc
Q 014091 406 GDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 406 ~~~ivv~D~G~~~~~~~~~ 424 (431)
|++++.|+|++.+|..++
T Consensus 398 -d~iv~~d~G~~~~~~~~~ 415 (585)
T CHL00099 398 -DAYFTTDVGQHQMWAAQF 415 (585)
T ss_pred -CeEEEECCcHHHHHHHHh
Confidence 999999999998876544
No 24
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.6e-69 Score=567.00 Aligned_cols=397 Identities=18% Similarity=0.212 Sum_probs=321.5
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEe
Q 014091 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVT 96 (431)
Q Consensus 18 ~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (431)
||+....++++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| +|||++|
T Consensus 7 ~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t 85 (571)
T PRK07710 7 MSSKTEEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIAT 85 (571)
T ss_pred hhcCCccccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 444445567899999999999999999999999999999999976 48999999999999999999999999 9999999
Q ss_pred CCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHH
Q 014091 97 FTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 97 ~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
+|||++|+++||++||.+++|||+|+|++++...+++. + |..||..+|+++|||++++.+++++++.+++|+
T Consensus 86 ~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~-----~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~ 157 (571)
T PRK07710 86 SGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDA-----F---QEADIMGITMPVTKHNYQVRKASDLPRIIKEAF 157 (571)
T ss_pred CCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCCCC-----c---cccchhhhhhcccceEEecCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988665542 2 235899999999999999999999999999999
Q ss_pred HHhhhC-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHH
Q 014091 177 STALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAF 255 (431)
Q Consensus 177 ~~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l 255 (431)
+.|.++ +|||||+||.|++..+.+.......+... ..+. ..+++..+++++++|++||||+|++|.|++++++.++|
T Consensus 158 ~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l 235 (571)
T PRK07710 158 HIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMDLPG-YQPN-YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKEL 235 (571)
T ss_pred HHHhcCCCCcEEEEcChhHhhccccccccccccccC-CCCC-CCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHH
Confidence 999997 59999999999976432110010001100 0110 12345679999999999999999999999888899999
Q ss_pred HHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEcc
Q 014091 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQP 335 (431)
Q Consensus 256 ~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~ 335 (431)
++|+|++++||+||++|||+||++||+++|++ |..++..+++++++||+||++|+++++..+..|..+.++.++||||.
T Consensus 236 ~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~ 314 (571)
T PRK07710 236 TSYAEQQEIPVVHTLLGLGGFPADHPLFLGMA-GMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDI 314 (571)
T ss_pred HHHHHHhCCCEEEcCccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEEC
Confidence 99999999999999999999999999999995 88899999999999999999999999887766655667788999999
Q ss_pred CceeecCCCcccc----ccHHHHHHHHHHHhcccc--c-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 014091 336 HRVTVGNGPSLGW----VFMADFLSALAKKLRKNT--T-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (431)
Q Consensus 336 d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ 408 (431)
|+.+++ ..+..+ .|++.+|++|++.+.... . |...++......... ......++++..+++.|++.+++++
T Consensus 315 d~~~ig-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~ 392 (571)
T PRK07710 315 DPAEIG-KNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLS-YKRNSESIKPQKAIEMLYEITKGEA 392 (571)
T ss_pred CHHHhc-CcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhh-hcCCCCCcCHHHHHHHHHhhCCCCe
Confidence 999887 433332 399999999988765421 1 221221111000000 0111346999999999999999999
Q ss_pred EEEecCChhhhhcc-ccccCC
Q 014091 409 AVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 409 ivv~D~G~~~~~~~-~~~~p~ 428 (431)
+++.|+|++.+|.. ++.++.
T Consensus 393 iv~~d~g~~~~~~~~~~~~~~ 413 (571)
T PRK07710 393 IVTTDVGQHQMWAAQYYPFKT 413 (571)
T ss_pred EEEECCcHHHHHHHHhcccCC
Confidence 99999999877644 444443
No 25
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=5.2e-69 Score=567.44 Aligned_cols=386 Identities=19% Similarity=0.259 Sum_probs=315.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 4789999999999999999999999999999999975 58999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++||.+++|||+|+|+.++...+++ .+ |..|+..+|+++|||++++++++++++.|++|++.|.+++|
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~G 151 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-----GF---QEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMG 151 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCC-----CC---cccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998766554 22 23488999999999999999999999999999999999889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+. ..+.+..... ..++++.+++++++|++||||+|++|.|++++++.++|++|||++++
T Consensus 152 PV~l~iP~Dv~~~~~~~--~~~~~~~~~~----~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~ 225 (579)
T TIGR03457 152 PAQLNIPRDYFYGEIDV--EIPRPVRLDR----GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGA 225 (579)
T ss_pred CEEEEeCcchhhhhccc--ccCcccccCC----CCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCC
Confidence 99999999998743221 1111111111 12245679999999999999999999999988999999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccc-c--ccCCCCcceEEEccCceeec
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y--SLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~-~--~~~~~~~~~I~Id~d~~~~~ 341 (431)
||+||++|||+||++||+++|++ |..++...++++++||+||+||++++++.+.. | ..+.++.++||||.|+.+++
T Consensus 226 PV~tt~~gkg~~p~~hp~~~G~~-g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 304 (579)
T TIGR03457 226 PVVNSYLHNDSFPASHPLWVGPL-GYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG 304 (579)
T ss_pred CEEEcccccccCCCCCchhccCC-cCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999995 88888889999999999999999998765431 2 23345678999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc-------------chhhhhhh----ccC-CCCC------CCCCCCCCCcCH
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT-------------TALENYRR----IYV-PPGI------PVKRAQNEPLRV 393 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~-------------~~~~~~~~----~~~-~~~~------~~~~~~~~~l~~ 393 (431)
+++..+ .|++.+|++|.+.+..+. ..+..|.+ .+. .... ......+.++++
T Consensus 305 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (579)
T TIGR03457 305 -LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHP 383 (579)
T ss_pred -CCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCH
Confidence 444333 389999999988775320 00112211 100 0000 000112346999
Q ss_pred HHHHHHHHhhCCCCCEEEecCChhhhhcc-ccccCC
Q 014091 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 394 ~~~~~~L~~~l~~~~ivv~D~G~~~~~~~-~~~~p~ 428 (431)
..++++|++.+++|+|++.|+|++..|.. +++++.
T Consensus 384 ~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~ 419 (579)
T TIGR03457 384 RQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEK 419 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCC
Confidence 99999999999999999999999987754 555554
No 26
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=4e-69 Score=566.21 Aligned_cols=381 Identities=21% Similarity=0.279 Sum_probs=314.4
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (431)
+..++++++|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| ++||++|+|||++
T Consensus 5 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 84 (557)
T PRK08199 5 PRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGAT 84 (557)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHH
Confidence 356899999999999999999999999999999999987657999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
|+++||++||.+++|||+|+|++++...+++. ++ ..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 85 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~ 156 (557)
T PRK08199 85 NASIGVHTAFQDSTPMILFVGQVARDFREREA-----FQ---EIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSG 156 (557)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCccccCCCCc-----cc---ccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988776652 22 35899999999999999999999999999999999997
Q ss_pred -CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 183 -~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
+|||||+||.|++..+ ...+.... .... ...++++.+++++++|++||||+|++|.|+.++++.++|++|+|+
T Consensus 157 ~~GPV~l~iP~dl~~~~--~~~~~~~~--~~~~--~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~ 230 (557)
T PRK08199 157 RPGPVVLALPEDVLSET--AEVPDAPP--YRRV--AAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAER 230 (557)
T ss_pred CCCcEEEEcCHhHhhCc--ccccccCC--cCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHH
Confidence 5999999999997642 21111001 1111 112346679999999999999999999999988899999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCC---CCcceEEEccCce
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI---KKEKAIIVQPHRV 338 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~---~~~~~I~Id~d~~ 338 (431)
+++||++|++|||+||++||+++|++ |..++...++++++||+||++|++++++.+..|..+. ++.++||||.|+.
T Consensus 231 ~~~pV~tt~~~kg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~ 309 (557)
T PRK08199 231 WGLPVACAFRRQDLFDNRHPNYAGDL-GLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAE 309 (557)
T ss_pred hCCCEEEcCCcCCCCCCCChhhccCC-cCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHH
Confidence 99999999999999999999999995 8888888999999999999999999888765554332 4568999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccccchhhhh----hhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 014091 339 TVGNGPSLGW----VFMADFLSALAKKLRKNTTALENY----RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (431)
Q Consensus 339 ~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~iv 410 (431)
+++ .++..+ .|++.+|++|++.+......|..+ ++.+..... .....+++++..+++.|++.+++++++
T Consensus 310 ~~~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~ii 386 (557)
T PRK08199 310 ELG-RVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLAWSA--PLPGPGAVQLGEVMAWLRERLPADAII 386 (557)
T ss_pred HhC-CccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhhcc--ccCCCCCcCHHHHHHHHHHhCCCCeEE
Confidence 887 433333 389999999988654322212121 111111100 111234699999999999999999999
Q ss_pred EecCChhhhhcc
Q 014091 411 IAETGDSWFNCQ 422 (431)
Q Consensus 411 v~D~G~~~~~~~ 422 (431)
+.|+|++..|..
T Consensus 387 ~~d~g~~~~~~~ 398 (557)
T PRK08199 387 TNGAGNYATWLH 398 (557)
T ss_pred EECChHHHHHHH
Confidence 999999877643
No 27
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=5.1e-69 Score=565.75 Aligned_cols=388 Identities=22% Similarity=0.285 Sum_probs=317.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++++|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 579999999999999999999999999999999986678999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++|+.+++|||+|+|++++...+++ .+ |..||..+++++|||++++++++++.+.+++|++.|.+. +|
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~G 152 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSD-----AF---QEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----CC---cccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 22 335899999999999999999999999999999999997 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+. +.+.........+...+.++.+++++++|++||||+|++|.|++++++.++|++|+|++++
T Consensus 153 PV~i~iP~dv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~ 230 (558)
T TIGR00118 153 PVLVDLPKDVTTAEIEY--PYPEKVNLPGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQI 230 (558)
T ss_pred eEEEEcChhhhhhhccc--cccccccccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997643211 1110100000001012235679999999999999999999999988899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++...++++++||+||+||+++++..+.+|..+.++.++||||.|+.+++ .+
T Consensus 231 pv~tt~~~kg~~~e~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 308 (558)
T TIGR00118 231 PVTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KN 308 (558)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-Cc
Confidence 99999999999999999999996 88888899999999999999999999888777766667788999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhcccc----chh-hhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 345 SLGW----VFMADFLSALAKKLRKNT----TAL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
+..+ .|++.+|++|.+.+.... ..| +..+..+..... .......++++..++++|++.+|++++++.|+|
T Consensus 309 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g 387 (558)
T TIGR00118 309 VRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPL-KMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVG 387 (558)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhChh-hccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCc
Confidence 3333 389999999998875321 111 111111100000 011123469999999999999999999999999
Q ss_pred hhhhhc-cccccC
Q 014091 416 DSWFNC-QKLRLP 427 (431)
Q Consensus 416 ~~~~~~-~~~~~p 427 (431)
++..|. .++.++
T Consensus 388 ~~~~~~~~~~~~~ 400 (558)
T TIGR00118 388 QHQMWAAQFYPFR 400 (558)
T ss_pred HHHHHHHHhcccC
Confidence 986654 344444
No 28
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=7.5e-69 Score=567.50 Aligned_cols=389 Identities=20% Similarity=0.234 Sum_probs=310.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
.++++|+|++.|+++||+||||+||+++++|+++|.+. ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 37899999999999999999999999999999999753 46999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhe-eeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
+++||++||.|++|||+|+|++++...+++. ++ ..|+..+|+++| ||++++++++++++.+++|++.|+++
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~-----~q---~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~ 153 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHY-----QQ---EVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAE 153 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCC-----CC---ccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988766652 22 357889999999 99999999999999999999999998
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCC--CCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTFARDP--VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
+|||||+||.|++..+.+...... .............++++.+++++++|++||||+|++|.|+. ++.++|.+|||
T Consensus 154 ~gPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae 231 (597)
T PRK08273 154 RTVTAVILPNDVQELEYEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAE 231 (597)
T ss_pred CCCEEEEeCcchhhCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHH
Confidence 899999999999864321110000 00000000011123567899999999999999999999996 58999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~ 340 (431)
++++||+||++|||+||++||+++|++ |..++..+++++++|||||+||++++... +....++.++||||+|+.++
T Consensus 232 ~~~~PV~tt~~gkg~~~e~hp~~~G~~-G~~g~~~a~~~~~~aDlvl~lG~~~~~~~---~~~~~~~~~~i~Id~d~~~~ 307 (597)
T PRK08273 232 RLGAGVAKALLGKAALPDDLPWVTGSI-GLLGTKPSYELMRECDTLLMVGSSFPYSE---FLPKEGQARGVQIDIDGRML 307 (597)
T ss_pred HhCCceeecccCcccCCCCCccceecC-CCCccHHHHHHHHhCCEEEEeCCCCCHHh---cCCCCCCCeEEEEeCCHHHc
Confidence 999999999999999999999999996 88899999999999999999999985321 11112356899999999988
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhcccc--chhhhh---hhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 341 GNGPSLGW----VFMADFLSALAKKLRKNT--TALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 341 ~~~~~~~~----~d~~~~L~~L~~~l~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
+ ..+..+ .|++.+|++|++.+..+. .|+..+ ++.+.............+|+|..++++|++.+++|+|++
T Consensus 308 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv 386 (597)
T PRK08273 308 G-LRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILT 386 (597)
T ss_pred C-CCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEE
Confidence 7 433332 389999999998876432 121111 111100000001112347999999999999999999999
Q ss_pred ecCChhhhh-ccccccCCC
Q 014091 412 AETGDSWFN-CQKLRLPEN 429 (431)
Q Consensus 412 ~D~G~~~~~-~~~~~~p~g 429 (431)
.|+|++..| ..+++++++
T Consensus 387 ~d~G~~~~~~~~~~~~~~~ 405 (597)
T PRK08273 387 ADSGSCANWYARDLRMRRG 405 (597)
T ss_pred ECCcHHHHHHHHhCCCCCC
Confidence 999998765 445656543
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=9.2e-69 Score=565.62 Aligned_cols=391 Identities=20% Similarity=0.252 Sum_probs=316.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
++++++|++.|+++||++|||+||+++++|++++.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 789999999999999999999999999999999976457999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++||.+++|||+|+|++++...+++ .+ |..|+..+|+++|||+.++++++++.+.+++|++.|.++ +|
T Consensus 84 ~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~G 155 (574)
T PRK06882 84 TGIATAYTDSVPLVILSGQVPSNLIGTD-----AF---QECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPG 155 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998866554 22 335889999999999999999999999999999999986 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++....+.....+.+.......+...+.++.+++++++|.+||||+|++|.|+.++++.+++.+|+|++++
T Consensus 156 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~ 235 (574)
T PRK06882 156 PVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNL 235 (574)
T ss_pred CEEEecCHHHhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997632110000000000000000011245679999999999999999999999988899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++..+++++++|||||+||++++++.+..|..+.++.++||||.|+.+++ .+
T Consensus 236 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~ 313 (574)
T PRK06882 236 PVTSSLMGLGAYPSTDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS-KN 313 (574)
T ss_pred CEEEcCccCcCCCCCChhhcCCC-cccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc-Cc
Confidence 99999999999999999999996 88889999999999999999999999888777765667778999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhcccc---------chhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 345 SLGW----VFMADFLSALAKKLRKNT---------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
+..+ .|++.+|++|.+.+..+. .|++.+.+........ ......++++..++++|++.++++++++
T Consensus 314 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 392 (574)
T PRK06882 314 VPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLE-FDRTSDVIKPQQVVEAIYRLTNGDAYVA 392 (574)
T ss_pred cCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhh-hccCCCCcCHHHHHHHHHhhcCCCeEEE
Confidence 3332 389999999988775321 1111111111000000 0111346999999999999999999999
Q ss_pred ecCChhhhh-ccccccCC
Q 014091 412 AETGDSWFN-CQKLRLPE 428 (431)
Q Consensus 412 ~D~G~~~~~-~~~~~~p~ 428 (431)
.|+|++..| ..++.+++
T Consensus 393 ~d~g~~~~~~~~~~~~~~ 410 (574)
T PRK06882 393 SDVGQHQMFAALHYPFDK 410 (574)
T ss_pred ecCchhHHHHHHhccccC
Confidence 999998665 44555543
No 30
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-68 Score=561.85 Aligned_cols=377 Identities=23% Similarity=0.301 Sum_probs=313.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 689999999999999999999999999999999975 48999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++|+.+++|||+|+|++++...+++ .+ |..||..+++++|||++++++++++++.+++|++.|.++ +|
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTD-----AF---QEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 22 235889999999999999999999999999999999997 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+. ..+.+. . .. ...+.++.+++++++|++||||+|++|.|+..+++.+++++|||++++
T Consensus 152 PV~l~iP~dv~~~~~~~--~~~~~~-~-~~--~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 225 (548)
T PRK08978 152 PVLVDIPKDIQLAEGEL--EPHLTT-V-EN--EPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGM 225 (548)
T ss_pred cEEEecChhhhhccccc--cccccc-c-CC--CCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCC
Confidence 99999999997643221 111110 0 01 112345679999999999999999999999888899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++...++++++||+||++|+++++..+..+..+.++.++||||.|+.+++ ++
T Consensus 226 Pv~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 303 (548)
T PRK08978 226 PAVATLKGLGAVEADHPYYLGML-GMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KL 303 (548)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CC
Confidence 99999999999999999999996 88888899999999999999999998877765655667778999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhh
Q 014091 345 SLGW----VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFN 420 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~ 420 (431)
+..+ .|++.+|++|.+.+.... |...+.+........ ......++++..++++|++.++++++++.|+|++.+|
T Consensus 304 ~~~~~~i~~d~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~ 381 (548)
T PRK08978 304 RQAHVALQGDLNALLPALQQPLNIDA-WRQHCAQLRAEHAWR-YDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMW 381 (548)
T ss_pred CCCCeEEecCHHHHHHHHHHhccchH-HHHHHHHHHHhCchh-ccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHH
Confidence 3333 389999999988764322 222221111000000 1112346999999999999999999999999999877
Q ss_pred cc
Q 014091 421 CQ 422 (431)
Q Consensus 421 ~~ 422 (431)
..
T Consensus 382 ~~ 383 (548)
T PRK08978 382 VA 383 (548)
T ss_pred HH
Confidence 43
No 31
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.8e-68 Score=560.80 Aligned_cols=379 Identities=20% Similarity=0.276 Sum_probs=312.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 679999999999999999999999999999999964 68999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++||.+++|||+|+|++++...+++. ++..|+..+|+++|||++++++++++++.+++|++.|+++ +|
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQGS--------FQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPG 151 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCCc--------cccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999988665542 2345899999999999999999999999999999999997 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+ ... .+.+...... ..++.+.+++++++|++||||+|++|.|+.++++.+++++|||++++
T Consensus 152 PV~l~iP~dv~~~~--~~~-~~~~~~~~~~---~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~ 225 (547)
T PRK08322 152 AVHLELPEDIAAEE--TDG-KPLPRSYSRR---PYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGI 225 (547)
T ss_pred cEEEEcChhhhhCc--ccc-ccccccCCCC---CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCC
Confidence 99999999997642 211 1111111111 12245679999999999999999999999888899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..+++.+++++++||+||+||+++.++.+..|. +.++.++||||.|+..++ ..
T Consensus 226 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~ 302 (547)
T PRK08322 226 PFFTTQMGKGVIPETHPLSLGTA-GLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVD-PV 302 (547)
T ss_pred CEEEccccCCcCCCCCchhccCC-CCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999995 8888888899999999999999999887765554 234668999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhccccc----hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCh
Q 014091 345 SLGW----VFMADFLSALAKKLRKNTT----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~ 416 (431)
+..+ .|++.+|++|.+.+..... ++.++++...............++++..+++.|++.++++++++.|+|+
T Consensus 303 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~ 382 (547)
T PRK08322 303 YFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA 382 (547)
T ss_pred cCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH
Confidence 3333 3899999999987754221 1222221110000000111233699999999999999999999999999
Q ss_pred hhhhccc
Q 014091 417 SWFNCQK 423 (431)
Q Consensus 417 ~~~~~~~ 423 (431)
+..|..+
T Consensus 383 ~~~~~~~ 389 (547)
T PRK08322 383 YKIWFAR 389 (547)
T ss_pred HHHHHHH
Confidence 9777543
No 32
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=2.2e-68 Score=563.38 Aligned_cols=388 Identities=20% Similarity=0.263 Sum_probs=316.8
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcch
Q 014091 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (431)
Q Consensus 23 ~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (431)
|+++++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||+
T Consensus 2 ~~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 80 (588)
T PRK07525 2 GKMKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGI 80 (588)
T ss_pred CcccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccH
Confidence 4567999999999999999999999999999999999975 57999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 181 (431)
+|+++||++|+.+++|||+|+|++++...+++ .+ |..|+..+|+++|||+.++++++++++.|++|++.|++
T Consensus 81 ~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~ 152 (588)
T PRK07525 81 TNFVTAVATAYWAHTPVVLVTPQAGTKTIGQG-----GF---QEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKR 152 (588)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccCCCC-----CC---cccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988755543 12 23488999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 182 ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 182 ~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
++|||||+||.|++..+.+. ..+.+... .. ..++++.+++++++|.+||||+|++|.|++++++.++|++|||+
T Consensus 153 ~~GPV~i~iP~Dv~~~~~~~--~~~~~~~~-~~---~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~ 226 (588)
T PRK07525 153 ESGPAQINIPRDYFYGVIDV--EIPQPVRL-ER---GAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAER 226 (588)
T ss_pred CCCCEEEEcChhHhhhhccc--ccCccccC-CC---CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHH
Confidence 89999999999998743221 11111111 11 12246789999999999999999999999988999999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccc---cccCCCCcceEEEccCce
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG---YSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~---~~~~~~~~~~I~Id~d~~ 338 (431)
+|+||+||++|||+||++||+++|++ |..++...++++++||+||+||++++++.+.. +..+.++.++||||.|+.
T Consensus 227 ~~~pv~tT~~gkg~~p~~hpl~~G~~-g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~ 305 (588)
T PRK07525 227 LDAPVACGYLHNDAFPGSHPLWVGPL-GYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPD 305 (588)
T ss_pred hCCCeEEcccccccCCCCCccccccC-cccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHH
Confidence 99999999999999999999999996 88888889999999999999999998766532 233456789999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccc-----c---------chhhhhhh----ccCCCC-----C-CC-CCCCCC
Q 014091 339 TVGNGPSLGW----VFMADFLSALAKKLRKN-----T---------TALENYRR----IYVPPG-----I-PV-KRAQNE 389 (431)
Q Consensus 339 ~~~~~~~~~~----~d~~~~L~~L~~~l~~~-----~---------~~~~~~~~----~~~~~~-----~-~~-~~~~~~ 389 (431)
+++ .++..+ .|++.+|++|++.+... . .....|.+ ...... . .. +....+
T Consensus 306 ~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (588)
T PRK07525 306 RIG-LTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPD 384 (588)
T ss_pred HhC-CCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCC
Confidence 887 443333 38999999998887532 0 00112211 100000 0 00 001234
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCChhhhhcc-ccccC
Q 014091 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 390 ~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~-~~~~p 427 (431)
++++.+++.+|++.+|+|+|++.|+|++..|.. ++.++
T Consensus 385 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~ 423 (588)
T PRK07525 385 YMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFE 423 (588)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccC
Confidence 799999999999999999999999999877654 44444
No 33
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.7e-68 Score=559.58 Aligned_cols=382 Identities=20% Similarity=0.244 Sum_probs=312.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
++++++++|++.|+++||+||||+||+++++|+++|.+ ++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 35799999999999999999999999999999999975 58999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++...+++ .+ |..|+..+|+++|||++++++++++++.+++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 153 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKR-----TH---QSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGR 153 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCC-----Cc---cccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998866654 22 335899999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
||||||+||.|++..+.+. ....+. ... ....+.++.+++++++|++||||+|++|.|++++++.+++++|||++
T Consensus 154 ~GPV~l~iP~dv~~~~~~~--~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 228 (552)
T PRK08617 154 PGAAFVSLPQDVVDAPVTS--KAIAPL-SKP--KLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERT 228 (552)
T ss_pred CCcEEEeChhhhhhccccc--cccccc-cCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHh
Confidence 5999999999998743221 100011 001 11112455789999999999999999999999888999999999999
Q ss_pred CCCeEecCCCcccCCCCCC-CcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp-~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
++||+||++|||+||++|| +++|++ |..++...++++++||+||+||+++.++.+..|... ++.++||||.|+..++
T Consensus 229 ~~pV~tt~~gkg~~~~~hp~~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~ 306 (552)
T PRK08617 229 NLPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSE-GDATIIHIDVLPAEID 306 (552)
T ss_pred CCCEEeccccCccCCCCCchhhccCC-cCCCcHHHHHHHHhCCEEEEecCccccccccccccC-CCCcEEEEeCChHHhC
Confidence 9999999999999999998 699995 888888889999999999999999877765555432 3568999999999987
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc------chhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
.++.++ .|++.+|++|++.++... .|...|++.............+.++++..+++.|++.++++++++
T Consensus 307 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 385 (552)
T PRK08617 307 -NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVT 385 (552)
T ss_pred -CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEE
Confidence 443333 389999999988776421 122223221100000011122356999999999999999999999
Q ss_pred ecCChhhhhccc
Q 014091 412 AETGDSWFNCQK 423 (431)
Q Consensus 412 ~D~G~~~~~~~~ 423 (431)
.|+|++..|..+
T Consensus 386 ~d~G~~~~~~~~ 397 (552)
T PRK08617 386 VDVGSHYIWMAR 397 (552)
T ss_pred eCCcHHHHHHHH
Confidence 999999877554
No 34
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-68 Score=558.19 Aligned_cols=380 Identities=20% Similarity=0.261 Sum_probs=310.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.+|++++|++.|+++||+||||+||+++++|+++|.++.+|++|.||||++|+||||||+|+|| ++||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 4799999999999999999999999999999999987658999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++||.+++|||+|+|+++....+++. +| ..|+.++|+++|||++++++++++++.+++|++.|++.||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-----~Q---e~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGF-----FQ---ETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGG 153 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCC-----cc---ccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887666542 22 2477899999999999999999999999999999998789
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++.++.+.. ..+.. ..+......++++.+++++++|++||||+|++|.|++ ++.+++.+|+|++++
T Consensus 154 PV~l~lP~Dv~~~~~~~~-~~~~~--~~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~ 228 (578)
T PRK06546 154 VSVVTLPGDIADEPAPEG-FAPSV--ISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKA 228 (578)
T ss_pred CEEEEcChhhhhcccccc-ccccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCc
Confidence 999999999977432211 10000 1011111123567899999999999999999999997 588999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||++|++|||+||++||+++|+ .|..++..+++++++|||||+||++++. ..+.++.++||||.|+.+++ .+
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~-~G~~~~~~~~~~l~~aDlvl~lG~~~~~------~~~~~~~~~I~vd~d~~~~~-~~ 300 (578)
T PRK06546 229 PVGHSLRGKEWIQYDNPFDVGM-SGLLGYGAAHEAMHEADLLILLGTDFPY------DQFLPDVRTAQVDIDPEHLG-RR 300 (578)
T ss_pred ceEECcccccCCCCCCccccCC-CCCCCCHHHHHHHHhCCEEEEEcCCCCh------hhcCCCCcEEEEeCCHHHhC-CC
Confidence 9999999999999999999998 4888999999999999999999998752 22345678999999999997 43
Q ss_pred cccc----ccHHHHHHHHHHHhcccc--chhhhh---hhccCCC---CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 014091 345 SLGW----VFMADFLSALAKKLRKNT--TALENY---RRIYVPP---GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~--~~~~~~---~~~~~~~---~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~ 412 (431)
+..+ .|++.+|++|++.|..+. .|...+ .+.+..+ ..........+|++..+++.|++.++++++++.
T Consensus 301 ~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~ 380 (578)
T PRK06546 301 TRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTV 380 (578)
T ss_pred CCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEE
Confidence 3322 389999999999886432 121111 1110000 000011123469999999999999999999999
Q ss_pred cCChhhhhcccccc
Q 014091 413 ETGDSWFNCQKLRL 426 (431)
Q Consensus 413 D~G~~~~~~~~~~~ 426 (431)
|+|++.+|..++..
T Consensus 381 d~G~~~~~~~~~~~ 394 (578)
T PRK06546 381 DTGMCNVWAARYIT 394 (578)
T ss_pred CCcHHHHHHHHhcC
Confidence 99999888765543
No 35
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=1.1e-67 Score=553.47 Aligned_cols=378 Identities=20% Similarity=0.257 Sum_probs=308.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNA 107 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~g 107 (431)
++++|++.|+++||+||||+||+++++|++++.+ ++|++|.||||++|+||||||+|+|| +|||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 4799999999999999999999999999999975 58999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CCcE
Q 014091 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPV 186 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv 186 (431)
|++|+.+++|||+|+|++++...+++. + +..|+..+|+++|||++++++++++++.+++|++.|.++ ||||
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV 151 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKLT-----H---QSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAA 151 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccCc-----c---cccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 999999999999999999887655431 2 235789999999999999999999999999999999987 5999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
||+||.|++..+.+. . ..+....+. . ..+.++.+++++++|++||||+|++|.|++++++.+++++|||++++||
T Consensus 152 ~l~iP~dv~~~~~~~--~-~~~~~~~~~-~-~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 152 FVSLPQDVVDSPVSV--K-AIPASYAPK-L-GAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred EEEcChhHhhCcccc--c-ccCcccCCC-C-CCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 999999998743221 1 111001111 1 1123457899999999999999999999998899999999999999999
Q ss_pred EecCCCcccCCCCC-CCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCc
Q 014091 267 AIMPSGKGLVPEHH-PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (431)
Q Consensus 267 ~tt~~gkg~~~~~h-p~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~ 345 (431)
++|++|||.||++| |+++|++ |..++..+++++++||+||++|+++.++.+..|... ++.++||||.|+.+++ ..+
T Consensus 227 ~tt~~gkg~i~~~~~~~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~-~~~ 303 (539)
T TIGR02418 227 VETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNSE-NDATIVHIDVEPAQID-NNY 303 (539)
T ss_pred EEccccCcCCCCCCChhhcccC-cCCCcHHHHHHHHhCCEEEEecCcccccCccccCcC-CCCeEEEEeCChHHcC-Ccc
Confidence 99999999999997 7899995 888888899999999999999999987776666522 2468999999999987 443
Q ss_pred ccc----ccHHHHHHHHHHHhcccc--c----hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 346 LGW----VFMADFLSALAKKLRKNT--T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 346 ~~~----~d~~~~L~~L~~~l~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
..+ .|++.+|++|++.+.... . +...+++.+.............++++..+++.|++.++++++++.|+|
T Consensus 304 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G 383 (539)
T TIGR02418 304 QPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMG 383 (539)
T ss_pred CCCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCc
Confidence 333 389999999998775421 1 111221111000000001123469999999999999999999999999
Q ss_pred hhhhhccc
Q 014091 416 DSWFNCQK 423 (431)
Q Consensus 416 ~~~~~~~~ 423 (431)
++..|..+
T Consensus 384 ~~~~~~~~ 391 (539)
T TIGR02418 384 SHYIWMAR 391 (539)
T ss_pred HHHHHHHH
Confidence 99877543
No 36
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.4e-67 Score=557.06 Aligned_cols=389 Identities=23% Similarity=0.334 Sum_probs=316.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 579999999999999999999999999999999975 48999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++|+.+++|||+|+|++++...+++ .+ |..||..+|+++|||++++++++++++.|++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~G 151 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGND-----AF---QEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPG 151 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----CC---ccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998766554 22 235899999999999999999999999999999999987 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccC---CCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFL---APKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
||||+||.|++..+.+.. ..+.+... ...+. ..+.++.+++++++|++||||+|++|.|++++++.+++++|+|+
T Consensus 152 PV~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 229 (586)
T PRK06276 152 PVHIDLPKDVQEGELDLE-KYPIPAKIDLPGYKPT-TFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSEL 229 (586)
T ss_pred cEEEEcChhHHhhhhccc-cccccccccccCCCCC-CCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHH
Confidence 999999999976432110 00111000 00111 12245679999999999999999999999988899999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
+++||+||++|||+||++||+++|++ |..++...++++++|||||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 230 ~~~pv~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 308 (586)
T PRK06276 230 VKIPVCTTLMGKGAFPEDHPLALGMV-GMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG 308 (586)
T ss_pred HCCCEEEcCCCCccCCCCCcccccCC-CCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999996 88889999999999999999999999887766666667788999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc-chhhhhhh---ccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC-----CC
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT-TALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-----DT 408 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~-----~~ 408 (431)
.++..+ .|++.+|++|++.+.... .....|.+ .......+.......++++..++++|++.+++ |+
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~ 387 (586)
T PRK06276 309 -KNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNT 387 (586)
T ss_pred -CcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCe
Confidence 433333 389999999998775421 11112211 00000001111123469999999999999999 99
Q ss_pred EEEecCChhhhhcc-ccccCC
Q 014091 409 AVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 409 ivv~D~G~~~~~~~-~~~~p~ 428 (431)
+|+.|+|++.+|.. ++.+++
T Consensus 388 iv~~d~G~~~~~~~~~~~~~~ 408 (586)
T PRK06276 388 IITTDVGQNQMWMAHFFKTSA 408 (586)
T ss_pred EEEeCCcHHHHHHHHhcccCC
Confidence 99999999887744 344443
No 37
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=1.7e-68 Score=544.46 Aligned_cols=382 Identities=19% Similarity=0.181 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNA 107 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~g 107 (431)
.+++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||.+|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 4799999999999999999999999999999976568999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcch------HHHHHHHHHHHhhh
Q 014091 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALK 181 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~i~~A~~~A~~ 181 (431)
|++||.+++|||+|+|++++...+++. .|..||.++|+++|||+.+++++++ +++.|++|++.|.+
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGA--------NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCC--------CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999987665542 2346899999999999999999998 99999999999999
Q ss_pred C-CCcEEEEEccCCCCCCCCCCCCCCC---CccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHH
Q 014091 182 E-SKPVYISISCNLPGIPHPTFARDPV---PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (431)
Q Consensus 182 ~-~GPv~l~iP~dv~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~ 257 (431)
+ ||||||+||.|++..+.+...+... +...........+.++.+++++++|++||||+|++|.|+.++ +.++|.+
T Consensus 154 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~ 232 (432)
T TIGR00173 154 PPPGPVHINVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAA 232 (432)
T ss_pred CCCCCEEEeCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHH
Confidence 6 5999999999996532111000000 000000011112346679999999999999999999999876 8999999
Q ss_pred HHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCc
Q 014091 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (431)
Q Consensus 258 lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~ 337 (431)
|+|++++||++|++|||.+ ++| +++|++.|..++..+++++ ++|+||++|++++++.+..| .+.++.++||||.|+
T Consensus 233 lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~ 308 (432)
T TIGR00173 233 LAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDP 308 (432)
T ss_pred HHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCC
Confidence 9999999999999999999 789 9999875567777888888 99999999999988776666 233467899999999
Q ss_pred eeecCCCcccc----ccHHHHHHHHHHHhccccc-hhhhhhhccCC--CCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 014091 338 VTVGNGPSLGW----VFMADFLSALAKKLRKNTT-ALENYRRIYVP--PGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (431)
Q Consensus 338 ~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~iv 410 (431)
..++ .++..+ .|++.+|++|.+.++.... |...|.+.... .... ....+.+++|..++++|++.+|+|++|
T Consensus 309 ~~~~-~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~p~~~~~~l~~~lp~d~iv 386 (432)
T TIGR00173 309 GWLD-PSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALR-EVLAEEPLSELSLARALSQLLPEGAAL 386 (432)
T ss_pred CccC-CCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH-HHhccCCccHHHHHHHHHHhCCCCCeE
Confidence 9887 433322 3999999999888754221 22333221100 0000 001234699999999999999999999
Q ss_pred EecCChhhhhccccc
Q 014091 411 IAETGDSWFNCQKLR 425 (431)
Q Consensus 411 v~D~G~~~~~~~~~~ 425 (431)
+.|+|++..|...+.
T Consensus 387 v~d~g~~~~~~~~~~ 401 (432)
T TIGR00173 387 FVGNSMPIRDLDTFA 401 (432)
T ss_pred EEECCHHHHHHHhcC
Confidence 999999988765443
No 38
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=3e-67 Score=553.11 Aligned_cols=382 Identities=22% Similarity=0.331 Sum_probs=308.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhc-CCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
++++++|++.|+++||+||||+||+++++|+++|.+ +++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 4 ~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 83 (576)
T PRK08611 4 IKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHL 83 (576)
T ss_pred CcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHH
Confidence 689999999999999999999999999999999975 357999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++||.+++|||+|+|++++...+++. + |..|+..+|+++|||++++++++++++.+++|++.|.+++|
T Consensus 84 l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~-----~---q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~G 155 (576)
T PRK08611 84 LNGLYDAKMDHVPVLALAGQVTSDLLGTDF-----F---QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKG 155 (576)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCCC-----c---cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999988766542 2 23588999999999999999999999999999999998889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+.....+.+. ... ....++++.+++++++|++||||+|++|.|++ ++.+++++|+|++++
T Consensus 156 PV~l~iP~Dv~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~ 230 (576)
T PRK08611 156 VAVLTIPDDLPAQKIKDTTNKTVDT-FRP--TVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKI 230 (576)
T ss_pred CEEEEeChhhhhccccccccccccc-CCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCC
Confidence 9999999999764321110000111 111 11123456799999999999999999999997 477999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++... | +.++.++||||.|+.+++ .+
T Consensus 231 PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~a~~~l~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~i~-~~ 303 (576)
T PRK08611 231 PIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVGTNYPYVD---Y--LPKKAKAIQIDTDPANIG-KR 303 (576)
T ss_pred CEEEccccccccCCCCccccccC-CCCCcHHHHHHHHhCCEEEEeCCCCCccc---c--CCCCCcEEEEeCCHHHcC-Cc
Confidence 99999999999999999999996 88888889999999999999999875321 1 223578999999999987 44
Q ss_pred cccc----ccHHHHHHHHHHHhccccc--hhhhh---hhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 345 SLGW----VFMADFLSALAKKLRKNTT--ALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
+..+ .|++.+|++|++.+..... +.+.+ ++.+...........+.+++|..++++|++.+|++++++.|+|
T Consensus 304 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G 383 (576)
T PRK08611 304 YPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVG 383 (576)
T ss_pred cCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcCh
Confidence 3333 3899999999988764321 21111 1111000000011223469999999999999999999999999
Q ss_pred hhhhhcc-ccccCC
Q 014091 416 DSWFNCQ-KLRLPE 428 (431)
Q Consensus 416 ~~~~~~~-~~~~p~ 428 (431)
++.+|.. ++.+++
T Consensus 384 ~~~~~~~~~~~~~~ 397 (576)
T PRK08611 384 TVTVWSARYLNLGT 397 (576)
T ss_pred HHHHHHHhcCCcCC
Confidence 9988754 455543
No 39
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=6e-67 Score=550.72 Aligned_cols=385 Identities=17% Similarity=0.225 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC-CceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (431)
++++|++.|+++||+||||+||+++++|+++|.+++ +|++|.||||++|+||||||+|+|| +|||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 479999999999999999999999999999997643 5999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcE
Q 014091 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv 186 (431)
||++||.+++|||+|+|++++...+++ .+ +..|+..+++++|||++++.+++++++.+++|++.|.+.+|||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV 152 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMD-----TF---QEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVA 152 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCC-----Cc---ceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999999999999998765544 22 2358899999999999999999999999999999999978999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 187 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
||+||.|++..+.+.......+. .........++++.+++++++|++||||+|++|.|++ ++.++|.+|||++++||
T Consensus 153 ~l~iP~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 153 VVTIPVDFGWQEIPDNDYYASSV-SYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPL 229 (575)
T ss_pred EEEECcchhhccccccccccccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCE
Confidence 99999999764322110000010 0000001123567899999999999999999999997 48899999999999999
Q ss_pred EecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCcc
Q 014091 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (431)
Q Consensus 267 ~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~ 346 (431)
+||++|||+||++||+++|++ |..+++.+++++++||+||++|++++...+ .+. +.++.++||||.|+.+++ +++.
T Consensus 230 ~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~~~-~~~~~~~I~id~d~~~~~-~~~~ 305 (575)
T TIGR02720 230 ISTGLAKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVGNNYPFAEV-SKA-FKNTKYFIQIDIDPAKLG-KRHH 305 (575)
T ss_pred EEcccccccCCCCCcccccCC-cCCCcHHHHHHHHhCCEEEEeCCCCCcccc-ccc-cCCCceEEEEeCCHHHhC-CCCC
Confidence 999999999999999999996 777888899999999999999999864322 222 223444699999999887 4433
Q ss_pred cc----ccHHHHHHHHHHHhccccc--hhhhhh---hccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChh
Q 014091 347 GW----VFMADFLSALAKKLRKNTT--ALENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (431)
Q Consensus 347 ~~----~d~~~~L~~L~~~l~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~ 417 (431)
.+ .|++.+|++|++.+..+.. ++..+. +.+.............+|++..++++|++.+++|+|++.|+|++
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~ 385 (575)
T TIGR02720 306 TDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDI 385 (575)
T ss_pred CCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHH
Confidence 32 3899999999988764221 111111 11100000001112347999999999999999999999999999
Q ss_pred hhhcc-ccccCC
Q 014091 418 WFNCQ-KLRLPE 428 (431)
Q Consensus 418 ~~~~~-~~~~p~ 428 (431)
.+|.. +++++.
T Consensus 386 ~~~~~~~~~~~~ 397 (575)
T TIGR02720 386 NINSNRHLKMTP 397 (575)
T ss_pred HHHHHHhCCcCC
Confidence 88854 445443
No 40
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1e-66 Score=549.71 Aligned_cols=383 Identities=19% Similarity=0.231 Sum_probs=308.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.++++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||+|+|| ++||++|+|||.+|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 4789999999999999999999999999999999976568999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++|+.+++|||+|+|++++...+++. + |..|+..+|+++|||++++++++++++.+++|++.|.+.+|
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~g 153 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGY-----F---QETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRG 153 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCC-----c---cccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988766652 2 23578999999999999999999999999999999998789
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+.. ............ ..+.++.+++++++|++||||+|++|.|+. ++.+++++|||++++
T Consensus 154 PV~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~ 228 (574)
T PRK09124 154 VAVVVLPGDVALKPAPER-ATPHWYHAPQPV--VTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKA 228 (574)
T ss_pred CEEEEeChhhhhCccccc-cccccccCCCCC--CCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCC
Confidence 999999999987532211 100000000110 112356899999999999999999999984 588999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++...++++++||+||+||++++... | +.++.++||||.|+.+++ .+
T Consensus 229 PV~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~ 301 (574)
T PRK09124 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGYHAMMNCDTLLMLGTDFPYRQ---F--YPTDAKIIQIDINPGSLG-RR 301 (574)
T ss_pred ceEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEECCCCCccc---c--cCCCCcEEEeeCCHHHhC-CC
Confidence 99999999999999999999995 88888888899999999999999885321 1 234568999999999987 44
Q ss_pred cccc----ccHHHHHHHHHHHhcccc--chhhhhhh---ccCCC--CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 014091 345 SLGW----VFMADFLSALAKKLRKNT--TALENYRR---IYVPP--GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~--~~~~~~~~---~~~~~--~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D 413 (431)
+..+ .|++.+|++|++.+..+. .+...|.+ .+... ..........++++..+++.|++.++++++++.|
T Consensus 302 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d 381 (574)
T PRK09124 302 SPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCD 381 (574)
T ss_pred CCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEc
Confidence 4333 389999999988775322 12222211 00000 0000111235699999999999999999999999
Q ss_pred CChhhhhcc-ccccCC
Q 014091 414 TGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 414 ~G~~~~~~~-~~~~p~ 428 (431)
+|++.+|.. ++.++.
T Consensus 382 ~g~~~~~~~~~~~~~~ 397 (574)
T PRK09124 382 VGTPTVWAARYLKMNG 397 (574)
T ss_pred CCHHHHHHHHhcccCC
Confidence 999988755 334443
No 41
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-66 Score=544.82 Aligned_cols=382 Identities=21% Similarity=0.276 Sum_probs=305.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+.+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 79 (535)
T PRK07524 1 MTTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNI 79 (535)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 3589999999999999999999999999999999975 48999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCc-eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
++||++||.+++|||+|+|++++...+++. .+| +..||..+|+++|||+.++.+++++++.+++|++.|+++
T Consensus 80 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~------~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~ 153 (535)
T PRK07524 80 ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLH------ELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSAR 153 (535)
T ss_pred HHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccc------ccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987666532 222 335899999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+. ....+. .... ...++++.+++++++|++||||+|++|.|++ ++.++|.+|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~--~~~~~~-~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l 226 (535)
T PRK07524 154 PRPVHIEIPLDVLAAPADH--LLPAPP-TRPA--RPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERL 226 (535)
T ss_pred CCcEEEEeCHhHHhccccc--ccCccc-ccCC--CCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHH
Confidence 5999999999998743221 111110 1010 1123467899999999999999999999997 4789999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccc-c-ccCCCCcceEEEccCceee
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y-SLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~-~-~~~~~~~~~I~Id~d~~~~ 340 (431)
++||+||++|||.||++||+++|.. | ++..+++++++||+||++|+++.++.+.. | ..+.++.++||||.|+.++
T Consensus 227 ~~pV~tt~~~kg~~p~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 303 (535)
T PRK07524 227 DAPVALTINAKGLLPAGHPLLLGAS-Q--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQL 303 (535)
T ss_pred CCCEEEcccccccCCCCChhhccCC-C--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHh
Confidence 9999999999999999999999974 4 56788999999999999999987655421 1 2344567899999999988
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccccc---hhhh-hhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 014091 341 GNGPSLGW----VFMADFLSALAKKLRKNTT---ALEN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (431)
Q Consensus 341 ~~~~~~~~----~d~~~~L~~L~~~l~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~ 412 (431)
+ +++..+ .|++.+|++|++.++.+.. |... +.+.+.. ... .. ....+++..++++|++.++ +++++.
T Consensus 304 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~l~~~l~-~~~i~~ 378 (535)
T PRK07524 304 A-RNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQA-LRA-EW-DPLTAAQVALLDTILAALP-DAIFVG 378 (535)
T ss_pred C-CCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHh-chh-hc-cccccCHHHHHHHHHHhCC-CCEEEe
Confidence 7 443333 3899999999998865321 1111 1111100 000 01 1224678889999999998 688999
Q ss_pred cCChhhhhc-cccccCCC
Q 014091 413 ETGDSWFNC-QKLRLPEN 429 (431)
Q Consensus 413 D~G~~~~~~-~~~~~p~g 429 (431)
|+|++.+|. .+++++++
T Consensus 379 d~g~~~~~~~~~~~~~~p 396 (535)
T PRK07524 379 DSTQPVYAGNLYFDADAP 396 (535)
T ss_pred CCcHHHHHHHHhcccCCC
Confidence 999988774 35555543
No 42
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=6.4e-67 Score=549.15 Aligned_cols=381 Identities=21% Similarity=0.217 Sum_probs=302.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++|+|++.|+++||+||||+||++++++++++.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||.+|+
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 4679999999999999999999999999999999974 58999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|++++...+.+ .+..+..|+..+|+++|||++++++++++++.|++|++.|.++ |
T Consensus 81 ~~gia~A~~~~~Pvl~I~G~~~~~~~~~~------~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~p 154 (554)
T TIGR03254 81 LTALANATTNCFPMIMISGSSERHIVDLQ------QGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRP 154 (554)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccC------CCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987633211 1112335899999999999999999999999999999999986 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCC-CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 184 KPVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
|||||+||.|++..+.+..... +......+. ....+.++.+++++++|++||||+|++|.|++++++.++|++|+|++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 233 (554)
T TIGR03254 155 GGVYLDLPAAVLGQTMEAEKAKKTLVKVVDPA-PKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKT 233 (554)
T ss_pred CcEEEEcCHHHhhccccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHH
Confidence 9999999999987432211000 000000010 01123467899999999999999999999999889999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccc-cCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~I~Id~d~~~~~ 341 (431)
++||+||++|||+||++||+++|. ..++++++||+||++|++++++.++++. .+.++.++||||.|+.+++
T Consensus 234 ~~pv~tt~~gkg~~p~~hp~~~g~--------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~ 305 (554)
T TIGR03254 234 GIPFLPMSMAKGLLPDTHPQSAAA--------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMD 305 (554)
T ss_pred CCCEEEcCCcceeCCCCCchhhhH--------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhC
Confidence 999999999999999999999984 3467899999999999999988776653 4446778999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc----c-hhhh---hhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--C
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT----T-ALEN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--D 407 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~----~-~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~--~ 407 (431)
.++..+ .|++++|++|.+.+.... . |..+ +++.+.............++++..+++.|++.+++ +
T Consensus 306 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~ 384 (554)
T TIGR03254 306 -SNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPD 384 (554)
T ss_pred -CCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCC
Confidence 333222 389999999999885321 1 2111 11111000000001123479999999999999974 7
Q ss_pred CEEEecCChhhhhccc
Q 014091 408 TAVIAETGDSWFNCQK 423 (431)
Q Consensus 408 ~ivv~D~G~~~~~~~~ 423 (431)
.+++.|+|++.+|..+
T Consensus 385 ~ivv~d~~~~~~~~~~ 400 (554)
T TIGR03254 385 IYLVNEGANTLDLARN 400 (554)
T ss_pred EEEEeCCchHHHHHHH
Confidence 8888998888777554
No 43
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-66 Score=546.50 Aligned_cols=382 Identities=20% Similarity=0.231 Sum_probs=306.0
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhc--C-ccEEEEeCCc
Q 014091 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR--G-VGACVVTFTV 99 (431)
Q Consensus 23 ~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t--g-~gv~~~t~Gp 99 (431)
+.++++++|+|++.|+++||++|||+|| .+|+++|.+ .+|++|.||||++|+||||||+|+| | +|||++|+||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GP 91 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGP 91 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 4577999999999999999999999994 589999976 5899999999999999999999999 5 8999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHh
Q 014091 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A 179 (431)
|++|+++||++||.+++|||+|+|+.++...+++ . ..|+..+|+++|||+.++.+++++++.|++|++.|
T Consensus 92 G~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---------~-~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A 161 (565)
T PRK06154 92 GAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA---------P-NFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRL 161 (565)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC---------C-CcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987654332 1 13678999999999999999999999999999999
Q ss_pred hhC-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHH
Q 014091 180 LKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (431)
Q Consensus 180 ~~~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~l 258 (431)
+++ +|||||+||.|++..+.+.. + .+. .........+.++.+++++++|++||||+|++|.|++++++.+++.+|
T Consensus 162 ~s~~~GPV~l~iP~Dv~~~~~~~~-~--~~~-~~~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~l 237 (565)
T PRK06154 162 RNGRPGPVVLELPVDVLAEELDEL-P--LDH-RPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKEL 237 (565)
T ss_pred hcCCCceEEEecchHHhhhhcccc-c--ccc-cCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHH
Confidence 996 59999999999987432110 1 110 000000112346689999999999999999999999998999999999
Q ss_pred HHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCce
Q 014091 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 259 ae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~ 338 (431)
||++++||+||++|||+||++||+|+|+. |..+...+++++++||+||+||++++++.+ ++. +.++.++||||+|+.
T Consensus 238 ae~l~~PV~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~-~~~-~~~~~~vI~id~d~~ 314 (565)
T PRK06154 238 AELLEIPVMTTLNGKSAFPEDHPLALGSG-GRARPATVAHFLREADVLFGIGCSLTRSYY-GLP-MPEGKTIIHSTLDDA 314 (565)
T ss_pred HHHhCCCEEECCCcccCCCCCCccccCCC-CCCCcHHHHHHHHhCCEEEEECCCCccccc-Ccc-CCCCCeEEEEECCHH
Confidence 99999999999999999999999999984 777777889999999999999999987542 332 445678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccccc----hhhhhh-------hccCCCCCCCCCCCCCCcCHHHHHHHHHhh
Q 014091 339 TVGNGPSLGW----VFMADFLSALAKKLRKNTT----ALENYR-------RIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (431)
Q Consensus 339 ~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 403 (431)
+++ +++..+ .|++.+|++|++.+..+.. ....|. +.+.............+|+|..++++|++.
T Consensus 315 ~~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~ 393 (565)
T PRK06154 315 DLN-KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHA 393 (565)
T ss_pred Hhc-cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHh
Confidence 987 433332 3899999999987764311 001121 111000000011234569999999999999
Q ss_pred CC-CCCEEEecCChhhhhcc-cccc
Q 014091 404 LS-GDTAVIAETGDSWFNCQ-KLRL 426 (431)
Q Consensus 404 l~-~~~ivv~D~G~~~~~~~-~~~~ 426 (431)
++ +|+|++.|+|++.+|.. ++++
T Consensus 394 l~~~d~iv~~D~G~~~~~~~~~~~~ 418 (565)
T PRK06154 394 VDIKTVIITHDAGSPRDQLSPFYVA 418 (565)
T ss_pred cCCCCEEEEECCcccHHHHHHhCCC
Confidence 97 58888899999988744 4443
No 44
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-66 Score=544.29 Aligned_cols=374 Identities=21% Similarity=0.287 Sum_probs=303.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
..|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.||||++|+||||||+|+|| ++||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n 81 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTN 81 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHH
Confidence 56899999999999999999999999999999999975 47999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|+.+....+++. ++ ..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 82 ~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~q---~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 153 (542)
T PRK05858 82 GMSAMAAAQFNQSPLVVLGGRAPALRWGMGS-----LQ---EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPH 153 (542)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcccCCCCC-----Cc---ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988766552 22 35789999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.. ..+.+..... ....+.++.+++++++|.+||||+|++|.|++++++.+++++|||++
T Consensus 154 ~GPV~l~iP~dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~l 230 (542)
T PRK05858 154 RGPVFVDFPMDHAFSMADDD-GRPGALTELP--AGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEEL 230 (542)
T ss_pred CCeEEEEcChhhhhcccccc-ccccccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHh
Confidence 59999999999987432111 0111110000 01123457899999999999999999999998888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
|+||+||++|||.||++||+|+|. ..++++++||+||++|+++++..+.++ +.++.++||||.|+.+++
T Consensus 231 g~pV~tt~~~kg~~~~~hpl~~~~--------~~~~~l~~aD~vl~vG~~~~~~~~~~~--~~~~~~~i~id~d~~~~~- 299 (542)
T PRK05858 231 GIPVLMNGMGRGVVPADHPLAFSR--------ARGKALGEADVVLVVGVPMDFRLGFGV--FGGTAQLVHVDDAPPQRA- 299 (542)
T ss_pred CCCEEEcCCcCCCCCCCCchhhhH--------HHHHHHHhCCEEEEECCCCcccccccc--cCCCCEEEEECCCHHHhc-
Confidence 999999999999999999999863 457889999999999999876544332 344578999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccccc---hhhhhhhc---cCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKNTT---ALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~ 412 (431)
.++..+ .|++++|++|.+.+..... |...+++. .............++|++..+++.|++.+|+|++++.
T Consensus 300 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~ 379 (542)
T PRK05858 300 HHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIG 379 (542)
T ss_pred CCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEE
Confidence 433222 3899999999987764221 22222111 1000000011223569999999999999999999999
Q ss_pred cCChhhhhc
Q 014091 413 ETGDSWFNC 421 (431)
Q Consensus 413 D~G~~~~~~ 421 (431)
|+|++..|.
T Consensus 380 d~g~~~~~~ 388 (542)
T PRK05858 380 DGGDFVSYA 388 (542)
T ss_pred CCcHHHHHH
Confidence 999987664
No 45
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=1.5e-66 Score=547.65 Aligned_cols=383 Identities=20% Similarity=0.207 Sum_probs=301.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
.+++++++|++.|+++||+||||+||+.++++++++.+ ++|++|.||||++|+||||||+|+|| +|||++|+|||++|
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 86 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLN 86 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 55799999999999999999999999999999999974 58999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|+.++...+.+ +..+ +..|+..+|+++|||++++++++++++.|++|++.|+++
T Consensus 87 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~~~---q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~ 160 (569)
T PRK09259 87 GLTALANATTNCFPMIMISGSSEREIVDLQ---QGDY---EELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGR 160 (569)
T ss_pred HHHHHHHHHhcCCCEEEEEccCCccccccc---CCCc---cccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCC
Confidence 999999999999999999999886632211 0112 335899999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
||||||+||.|++..+.+...................+.++.+++++++|++||||+|++|.|++++++.+++++|||++
T Consensus 161 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l 240 (569)
T PRK09259 161 PGGVYLDLPAKVLAQTMDADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240 (569)
T ss_pred CCcEEEEeCHHHhhCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 59999999999987532211000000000000001123467899999999999999999999999888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCccccccc-ccCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~I~Id~d~~~~~ 341 (431)
++||+||++|||+||++||+++|. ..++++++||+||+||++++++.+..+ ..+.++.++||||.|+.+++
T Consensus 241 ~iPV~tt~~gkg~~~e~hpl~~G~--------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~ 312 (569)
T PRK09259 241 GIPFLPMSMAKGLLPDTHPQSAAA--------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEID 312 (569)
T ss_pred CCCEEecccccccCCCCChhhhhH--------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhc
Confidence 999999999999999999999985 245778999999999999988766544 33446779999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccc---c--chhhh---hhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC--CC
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKN---T--TALEN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS--GD 407 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~---~--~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~--~~ 407 (431)
.++... .|++++|++|.+.+... . .|.++ +++.+.............++++..++++|++.++ +|
T Consensus 313 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d 391 (569)
T PRK09259 313 -SNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPD 391 (569)
T ss_pred -CCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCC
Confidence 333222 38999999999888632 1 12111 1111110000000112346999999999999995 48
Q ss_pred CEEEecCChhhhhccc
Q 014091 408 TAVIAETGDSWFNCQK 423 (431)
Q Consensus 408 ~ivv~D~G~~~~~~~~ 423 (431)
.+++.|+|++..|..+
T Consensus 392 ~iv~~~~~~~~~~~~~ 407 (569)
T PRK09259 392 IYLVNEGANTLDLARN 407 (569)
T ss_pred EEEEeCchHHHHHHHH
Confidence 8888888887666553
No 46
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-66 Score=545.65 Aligned_cols=372 Identities=20% Similarity=0.293 Sum_probs=300.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
|+|++++|++.|+++||+||||+||+++++|++++.++ +|++|.+|||++|+||||||+|+|| ++||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~ 79 (549)
T PRK06457 1 MPSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHL 79 (549)
T ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhh
Confidence 36899999999999999999999999999999999764 6999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++|+.+++|||+|+|++++...+++ .+ |..|+..+|+++|||++++++++++++.+++|++.|++++|
T Consensus 80 l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~G 151 (549)
T PRK06457 80 LNGLYDAKMDHAPVIALTGQVESDMIGHD-----YF---QEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRG 151 (549)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988755543 33 23589999999999999999999999999999999999889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++....+. . ........ . +.....+++++++|++||||+|++|.|++ ++.+++++|||++++
T Consensus 152 PV~l~iP~Dv~~~~~~~--~--~~~~~~~~-~--~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~ 222 (549)
T PRK06457 152 VAHINLPVDILRKSSEY--K--GSKNTEVG-K--VKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGA 222 (549)
T ss_pred CEEEEeCHhHhhccccc--c--cccccCCC-C--CCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCC
Confidence 99999999997642211 1 11100111 1 11124688999999999999999999997 477999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||+||++|||+||++||+++|++ |..++..+++++++||+||++|+++++.. | +.++.++||||.|+.+++ ++
T Consensus 223 PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~ 295 (549)
T PRK06457 223 PIIYTLNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFPYVN---F--LNKSAKVIQVDIDNSNIG-KR 295 (549)
T ss_pred CEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCChhh---c--CCCCCcEEEEeCCHHHhC-CC
Confidence 99999999999999999999996 88888889999999999999999986432 1 223678999999999987 44
Q ss_pred cccc----ccHHHHHHHHHHHhcccc-c----hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 345 SLGW----VFMADFLSALAKKLRKNT-T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
+..+ .|++.+|+.+.+...... . ....|.+..... ......++++..++++|++.+|++++++.|+|
T Consensus 296 ~~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g 371 (549)
T PRK06457 296 LDVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQ----ENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTG 371 (549)
T ss_pred CCCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHh----hcCCCCCcCHHHHHHHHHhhCCCCeEEEECCc
Confidence 4433 389999964433211100 0 112232111000 01123469999999999999999999999999
Q ss_pred hhhhhcc-cccc
Q 014091 416 DSWFNCQ-KLRL 426 (431)
Q Consensus 416 ~~~~~~~-~~~~ 426 (431)
++..|.. ++..
T Consensus 372 ~~~~~~~~~~~~ 383 (549)
T PRK06457 372 NVTMWTARHFRA 383 (549)
T ss_pred HHHHHHHHhCCC
Confidence 9987755 4444
No 47
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=3.6e-66 Score=546.07 Aligned_cols=394 Identities=23% Similarity=0.295 Sum_probs=312.3
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEE
Q 014091 16 APAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACV 94 (431)
Q Consensus 16 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~ 94 (431)
.|+...+....++++++|++.|+++||++|||+|+... +++++.+ ++|++|.||||++|+||||||+|+|| ++||+
T Consensus 3 ~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~ 79 (578)
T PRK06112 3 KPLSAPGFTLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVVT 79 (578)
T ss_pred cccCCCCCccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 35555566688999999999999999999999986642 4566754 57999999999999999999999999 99999
Q ss_pred EeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHH
Q 014091 95 VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDT 174 (431)
Q Consensus 95 ~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~ 174 (431)
+|+|||++|+++||++||.+++|||+|+|++++...+++ .+ |..||..+|+++|||++++.+++++++.+++
T Consensus 80 ~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~ 151 (578)
T PRK06112 80 AQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRN-----AF---QELDHIALFQSCTKWVRRVTVAERIDDYVDQ 151 (578)
T ss_pred eCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-----Cc---cccChhhhhccccceEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999999998866654 22 2358899999999999999999999999999
Q ss_pred HHHHhhhC-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCC-CChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchH
Q 014091 175 AISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV-SNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ 252 (431)
Q Consensus 175 A~~~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~ 252 (431)
|++.|+++ +|||||+||.|++..+.+.. ..+.+......+ ....+++..+++++++|++||||+|++|.|+.++++.
T Consensus 152 A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~ 230 (578)
T PRK06112 152 AFTAATSGRPGPVVLLLPADLLTAAAAAP-AAPRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGAS 230 (578)
T ss_pred HHHHHhhCCCCcEEEEcCHhHhhCccccc-cCcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchH
Confidence 99999997 59999999999987532111 011110000000 0112346789999999999999999999999988999
Q ss_pred HHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCC-CC----HHHHHHhhhCCEEEEeCCccCcccccccccCCCC
Q 014091 253 KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SS----SFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (431)
Q Consensus 253 ~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~-~~----~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (431)
+++.+|+|++|+||++|++|||+||++||+++|++ |.. ++ +.+++++++||+||+||++++++.+.+|..+.++
T Consensus 231 ~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~-g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~ 309 (578)
T PRK06112 231 AALAALQSLAGLPVATTNMGKGAVDETHPLSLGVV-GSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQ 309 (578)
T ss_pred HHHHHHHHHhCCCEEEcccccccCCCCCccccccc-cccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCC
Confidence 99999999999999999999999999999999986 543 22 4677889999999999999998888777666667
Q ss_pred cceEEEccCceeecCCCccc---cccHHHHHHHHHHHhcccc--------chh-hhhhhcc---CCCCCCCCCCCCCCcC
Q 014091 328 EKAIIVQPHRVTVGNGPSLG---WVFMADFLSALAKKLRKNT--------TAL-ENYRRIY---VPPGIPVKRAQNEPLR 392 (431)
Q Consensus 328 ~~~I~Id~d~~~~~~~~~~~---~~d~~~~L~~L~~~l~~~~--------~~~-~~~~~~~---~~~~~~~~~~~~~~l~ 392 (431)
.++||||.|+.+++ .++.. ..|++.+|++|++.+...+ ..| ..+.+.+ .............+|+
T Consensus 310 ~~~i~id~d~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 388 (578)
T PRK06112 310 AQYIHIDVDGEEVG-RNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIR 388 (578)
T ss_pred CeEEEEECChHHhC-ccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcC
Confidence 89999999999887 32221 1389999999988775321 111 1111111 0000000111234699
Q ss_pred HHHHHHHHHhhCCCCCEEEecCChhhhhccc
Q 014091 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (431)
Q Consensus 393 ~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~ 423 (431)
+..++++|++.++++++++.|+|++.+|..+
T Consensus 389 ~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~ 419 (578)
T PRK06112 389 PERIMAELQAVLTGDTIVVADASYSSIWVAN 419 (578)
T ss_pred HHHHHHHHHHhCCCCCEEEEcccHHHHHHHH
Confidence 9999999999999999999999999877653
No 48
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-66 Score=541.72 Aligned_cols=379 Identities=22% Similarity=0.262 Sum_probs=304.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++++|++.|+++||+||||+||+++++|++++.++++|++|.||||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 4789999999999999999999999999999999976568999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCc-eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
++||++||.+++|||+|+|++++...+++. .+| +..||.++|+++|||++++++++++++.|++|++.|.++
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~------~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 155 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIH------EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAP 155 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc------cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999887665542 222 335899999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.. ....+.. .. ...++++.+++++++|++||||+|++|.|++ ++.++|++||| +
T Consensus 156 ~GPV~l~iP~dv~~~~~~~~-~~~~~~~--~~--~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~ 227 (544)
T PRK07064 156 TGPVSVEIPIDIQAAEIELP-DDLAPVH--VA--VPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-L 227 (544)
T ss_pred CCcEEEEeCHhHhhcccccc-ccccccc--CC--CCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-c
Confidence 69999999999977432211 1111111 11 1123567899999999999999999999997 47789999999 9
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
++||++|++|||+||++||+++|++ | +++.+++++++||+||+||+++++..+..|.... +.++||||.|+.+++
T Consensus 228 ~~pv~~t~~~kg~~~~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~- 302 (544)
T PRK07064 228 GFGVVTSTQGRGVVPEDHPASLGAF-N--NSAAVEALYKTCDLLLVVGSRLRGNETLKYSLAL-PRPLIRVDADAAADG- 302 (544)
T ss_pred CCCEEEccCccccCCCCChhhcccC-C--CCHHHHHHHHhCCEEEEecCCCCcccccccccCC-CCceEEEeCCHHHhC-
Confidence 9999999999999999999999986 4 6778889999999999999999988776665333 458999999999886
Q ss_pred CCccc----cccHHHHHHHHHHHhcccc---c-hhhhhhhccCCCCCCCCCCCCCCcCH-HHHHHHHHhhCCCCCEEEec
Q 014091 343 GPSLG----WVFMADFLSALAKKLRKNT---T-ALENYRRIYVPPGIPVKRAQNEPLRV-NVLFKHIQDMLSGDTAVIAE 413 (431)
Q Consensus 343 ~~~~~----~~d~~~~L~~L~~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~L~~~l~~~~ivv~D 413 (431)
..+.. ..|++.+|++|.+.+.... . |...+...+..... . ...++++ ..+++.|++.+|++++++.|
T Consensus 303 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~l~~~~ii~~d 378 (544)
T PRK07064 303 RGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAVA--D--LRKGLGPYAKLVDALRAALPRDGNWVRD 378 (544)
T ss_pred CcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhh--h--cccccCcHHHHHHHHHHhCCCCCEEEeC
Confidence 33322 2499999999998876431 1 22222111110000 0 1123554 46999999999999999999
Q ss_pred CCh-hhhh-ccccccC
Q 014091 414 TGD-SWFN-CQKLRLP 427 (431)
Q Consensus 414 ~G~-~~~~-~~~~~~p 427 (431)
+|. +..| ..+++++
T Consensus 379 ~~~~~~~~~~~~~~~~ 394 (544)
T PRK07064 379 VTISNSTWGNRLLPIF 394 (544)
T ss_pred CccchHHHHHHhcCcc
Confidence 985 3444 4444443
No 49
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=2e-65 Score=536.92 Aligned_cols=371 Identities=23% Similarity=0.289 Sum_probs=299.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
+++++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 37999999999999999999999999999999999764 57999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++||.+++|||+|+|++++...+++... .++..||..+|+++|||+.++.+++++++.+++|++.|+++
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~-----~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 157 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGH-----LHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGR 157 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCc-----ceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999988765554211 12335899999999999999999999999999999999986
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+|||||+||.|++..+.+.. . .+. .... ....++++.+++++++|++||||+|++|.|+. ++.++|.+|+|++
T Consensus 158 ~GPV~l~iP~dv~~~~~~~~-~--~~~-~~~~-~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~~ 230 (542)
T PRK08266 158 PRPVALEMPWDVFGQRAPVA-A--APP-LRPA-PPPAPDPDAIAAAAALIAAAKNPMIFVGGGAA--GAGEEIRELAEML 230 (542)
T ss_pred CCcEEEEeCHhHhhCccccc-c--ccc-ccCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECCChh--hHHHHHHHHHHHH
Confidence 59999999999976432211 1 010 1000 01123456799999999999999999999964 5889999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecC
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~ 342 (431)
|+||++|++|||+||++||+++|.. .+++++++||+||+||+++.+. +..|..+.++.++||||.|+.+++
T Consensus 231 g~pv~tt~~~kg~~~~~hp~~~g~~-------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~- 301 (542)
T PRK08266 231 QAPVVAFRSGRGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMR- 301 (542)
T ss_pred CCCEEEeccccccCCCCCccccCCH-------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhC-
Confidence 9999999999999999999999863 4567889999999999999877 445654455678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccc--c-c-hhhhhhhccCCCCCCCCCCCCCCcCHH-HHHHHHHhhCCCCCEEEec
Q 014091 343 GPSLGW----VFMADFLSALAKKLRKN--T-T-ALENYRRIYVPPGIPVKRAQNEPLRVN-VLFKHIQDMLSGDTAVIAE 413 (431)
Q Consensus 343 ~~~~~~----~d~~~~L~~L~~~l~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~L~~~l~~~~ivv~D 413 (431)
. +..+ .|++.+|++|.+.+... . . +..++......... ....++++ .++++|++.+|+|++++.|
T Consensus 302 ~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~lp~d~ivv~d 375 (542)
T PRK08266 302 R-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKAAARQ-----RIQAVQPQASYLRAIREALPDDGIFVDE 375 (542)
T ss_pred C-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHhhhh-----ccccCCHHHHHHHHHHHhcCCCcEEEeC
Confidence 4 3333 38999999999887642 1 1 11222111100000 00136675 4899999999999999999
Q ss_pred CChhhhhccc
Q 014091 414 TGDSWFNCQK 423 (431)
Q Consensus 414 ~G~~~~~~~~ 423 (431)
+|++.+|..+
T Consensus 376 ~g~~~~~~~~ 385 (542)
T PRK08266 376 LSQVGFASWF 385 (542)
T ss_pred CcHHHHHHHH
Confidence 9999887653
No 50
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=4e-65 Score=532.89 Aligned_cols=373 Identities=21% Similarity=0.240 Sum_probs=303.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++++|++.|+++||+||||+||+++++|++++.+ +|++|.||||++|+||||||+|+|| ++||++|+|||.+|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 4789999999999999999999999999999999963 6999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++||.+++|||+|+|++++...+++..+ +..|+..+|+++|||+.++++++++++.|++|++.|+++ +
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-------~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-------AAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPR 161 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchh-------cccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998876655321 224788999999999999999999999999999999997 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+ .... ........ ..+.++.+++++++|++||||+|++|.|++++++.++|++|+|++|
T Consensus 162 GPv~l~iP~d~~~~~--~~~~--~~~~~~~~---~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg 234 (530)
T PRK07092 162 GPVFVSIPYDDWDQP--AEPL--PARTVSSA---VRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHR 234 (530)
T ss_pred CcEEEEccHHHhhCc--cccc--ccCCCCCC---CCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHC
Confidence 999999999997643 2111 11101111 1234668999999999999999999999998889999999999999
Q ss_pred CCeEecCC-CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccc-cCCCCcceEEEccCceeec
Q 014091 264 YPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 264 ~Pv~tt~~-gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~I~Id~d~~~~~ 341 (431)
+||++|++ +||+||++||+++|++ |. +....++++++||+||++|+++.+..+.+|. .+.++.++||||.|+.+++
T Consensus 235 ~pV~~t~~~~kg~~~~~hp~~~G~~-g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 312 (530)
T PRK07092 235 APVWVAPMSGRCSFPEDHPLFAGFL-PA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAA 312 (530)
T ss_pred CcEEEecCCCcCcCCCCCccccCcC-Cc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhc
Confidence 99999876 7999999999999986 43 3456778999999999999986544443443 3445678999999998875
Q ss_pred CCCccc---cccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhh
Q 014091 342 NGPSLG---WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (431)
Q Consensus 342 ~~~~~~---~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~ 418 (431)
..... ..|++++|++|++.++........+++. .. .......++++..+++.|++.++++++++.|+|++.
T Consensus 313 -~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~ 386 (530)
T PRK07092 313 -WAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPM--PP---PAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPSTR 386 (530)
T ss_pred -CCCCCCcccCCHHHHHHHHHHhhccccccchhhhhc--cc---cccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCccH
Confidence 32211 1389999999999886432111111110 00 011123569999999999999999999999999987
Q ss_pred hhcc
Q 014091 419 FNCQ 422 (431)
Q Consensus 419 ~~~~ 422 (431)
.|..
T Consensus 387 ~~~~ 390 (530)
T PRK07092 387 PAMQ 390 (530)
T ss_pred HHHH
Confidence 7654
No 51
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.3e-65 Score=538.10 Aligned_cols=376 Identities=17% Similarity=0.165 Sum_probs=296.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC-----CceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCC
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-----ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-----~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~G 98 (431)
.+++++|+|++.|+++||+||||+||+++++|++++.+++ +|++|.||||++|+||||||+|+|| +|||++|+|
T Consensus 5 ~~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 5 TMYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 3479999999999999999999999999999999997532 3999999999999999999999999 999999999
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCc---eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHH
Q 014091 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (431)
Q Consensus 99 pG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A 175 (431)
||++|+++||++||.|++|||+|+|+.++...+++. ..++.++ +..|+..+|+++|||++++++++++.+.|++|
T Consensus 85 PG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~q--e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A 162 (569)
T PRK08327 85 VGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQ--EMRDQGGLVREYVKWDYEIRRGDQIGEVVARA 162 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccch--hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998877654321 1112232 33589999999999999999999999999999
Q ss_pred HHHhhhC-CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHH
Q 014091 176 ISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKA 254 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~ 254 (431)
++.|.++ +|||||+||.|++..+.+.. ..+.+..... ....+.++.+++++++|++||||+|++|.|+.++++.++
T Consensus 163 ~~~a~~~~~GPV~i~iP~Dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~ 239 (569)
T PRK08327 163 IQIAMSEPKGPVYLTLPREVLAEEVPEV-KADAGRQMAP--APPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFAS 239 (569)
T ss_pred HHHHhcCCCCCEEEECcHHHHhhhcccc-ccCccccCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHH
Confidence 9999986 69999999999987432211 1110000111 111235678999999999999999999999999899999
Q ss_pred HHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEc
Q 014091 255 FIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQ 334 (431)
Q Consensus 255 l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id 334 (431)
+++|||++++||+||++|||.||++||+++|.+ .++++++|||||++|+++.+..+.. .+.++.++||||
T Consensus 240 l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~--------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id 309 (569)
T PRK08327 240 LRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD--------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQID 309 (569)
T ss_pred HHHHHHHhCCCEEecCCCceeCCCCCccccccc--------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEe
Confidence 999999999999999999999999999999963 4677899999999999987654422 134567899999
Q ss_pred cCceeecC--CCcccc----ccHHHHHHHHHHHhccccc-----------hhhhhhhcc-CCCCCC-CCCCCCCCcCHHH
Q 014091 335 PHRVTVGN--GPSLGW----VFMADFLSALAKKLRKNTT-----------ALENYRRIY-VPPGIP-VKRAQNEPLRVNV 395 (431)
Q Consensus 335 ~d~~~~~~--~~~~~~----~d~~~~L~~L~~~l~~~~~-----------~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~ 395 (431)
.|+.+++. +++..+ .|++.+|++|++.+..... .|.++.... ...... .....++++++..
T Consensus 310 ~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 389 (569)
T PRK08327 310 VDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAY 389 (569)
T ss_pred CChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHH
Confidence 99988752 122222 3899999999988764211 111111111 000000 0112335799999
Q ss_pred HHHHHHhhCCCCCEEEecCC
Q 014091 396 LFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 396 ~~~~L~~~l~~~~ivv~D~G 415 (431)
++++|++.++++++++.|.+
T Consensus 390 ~~~~l~~~l~~~~~vv~~~~ 409 (569)
T PRK08327 390 LSYCLGEVADEYDAIVTEYP 409 (569)
T ss_pred HHHHHHHhcCccceEEeccH
Confidence 99999999999999997765
No 52
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-64 Score=488.77 Aligned_cols=376 Identities=21% Similarity=0.258 Sum_probs=313.0
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (431)
.+.+++++.+++.|+++||+||||+.|.++.+|..+.... +||||.||||++|+|+|++|+++|| +|||++++|||.+
T Consensus 11 ~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~ 89 (571)
T KOG1185|consen 11 ASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLT 89 (571)
T ss_pred cccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHc-CCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHH
Confidence 4668999999999999999999999999999999999875 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
|+++|++||+.+++|||+|.|..++..++++ .+| -.||+.+++|+|||+.+++++++|+..+++|++.|+++
T Consensus 90 hal~gv~NA~~n~wPll~IgGsa~~~~~~rG-----afQ---e~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G 161 (571)
T KOG1185|consen 90 HALAGVANAQMNCWPLLLIGGSASTLLENRG-----AFQ---ELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSG 161 (571)
T ss_pred HHHHHhhhhhhccCcEEEEecccchhhhccc-----ccc---cccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcC
Confidence 9999999999999999999999999888876 233 36899999999999999999999999999999999997
Q ss_pred -CCcEEEEEccCCCCCCCCCCCC----CCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHH
Q 014091 183 -SKPVYISISCNLPGIPHPTFAR----DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (431)
Q Consensus 183 -~GPv~l~iP~dv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~ 257 (431)
|||+|+++|.|+.......... .+.+.. +.++...+..+.+++++++|++||||+|++|.|+..+.+.++|++
T Consensus 162 ~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~--p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~ 239 (571)
T KOG1185|consen 162 RPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPI--PLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRK 239 (571)
T ss_pred CCCceEEecccceeeeecccccccccCCCCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHH
Confidence 6999999999954321111100 111111 111122456788999999999999999999999998889999999
Q ss_pred HHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccc-cCCCCcceEEEccC
Q 014091 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPH 336 (431)
Q Consensus 258 lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~I~Id~d 336 (431)
|.|.+|+|++.|+||||++|++||++++. +-..+++.||+||++|+|+++..+++.+ .|.++.|+||||.+
T Consensus 240 ~Ve~~glPflptpMgKGll~d~hPl~v~~--------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n 311 (571)
T KOG1185|consen 240 FVETTGLPFLPTPMGKGLLPDNHPLNVSS--------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDIN 311 (571)
T ss_pred HHHhcCCCcccCcccccCCCCCCchhhhH--------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCC
Confidence 99999999999999999999999999874 4567899999999999999999887765 45678999999999
Q ss_pred ceeecCCC-cccc----ccHHHHHHHHHHHhccccc-------hhhhhhhccCCCC---CCCCCCCCCCcCHHHHHHHHH
Q 014091 337 RVTVGNGP-SLGW----VFMADFLSALAKKLRKNTT-------ALENYRRIYVPPG---IPVKRAQNEPLRVNVLFKHIQ 401 (431)
Q Consensus 337 ~~~~~~~~-~~~~----~d~~~~L~~L~~~l~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~L~ 401 (431)
+.+++ .+ ..++ .|++.++.+|.+.+..... |+++.++....++ .........++++..+++.++
T Consensus 312 ~Eel~-~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vr 390 (571)
T KOG1185|consen 312 PEELG-NNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVR 390 (571)
T ss_pred HHHHh-cccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHH
Confidence 99997 43 2333 3999999999999987432 3333322111111 111223445799999999999
Q ss_pred hhCC-CCCEEEecCChhhh
Q 014091 402 DMLS-GDTAVIAETGDSWF 419 (431)
Q Consensus 402 ~~l~-~~~ivv~D~G~~~~ 419 (431)
+.|| +|+|+|+|.+++.=
T Consensus 391 e~L~~~d~ilVsEGantmd 409 (571)
T KOG1185|consen 391 ELLPNDDTILVSEGANTMD 409 (571)
T ss_pred HhcCCCCcEEEecCCcchh
Confidence 9999 89999999998753
No 53
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=2.6e-65 Score=485.77 Aligned_cols=387 Identities=18% Similarity=0.239 Sum_probs=321.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
-.+++|++++.|.++||++|||+||+.++|++||+.+++.+++|+.||||+|+|||.||+|.+| ||||++|||||++|.
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv 169 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV 169 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence 3789999999999999999999999999999999999989999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
+++|++|.+|++||++++||.+++..|.+ .+++ .|.+.+.|.+|||.+.+.+.++++..|++||.+|.++ |
T Consensus 170 vtp~ADAlaDg~PlVvftGQVptsaIGtD-----AFQE---adiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRP 241 (675)
T KOG4166|consen 170 VTPLADALADGVPLVVFTGQVPTSAIGTD-----AFQE---ADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRP 241 (675)
T ss_pred cchhhHHhhcCCcEEEEecccchhhcccc-----hhcc---CCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCC
Confidence 99999999999999999999999988887 3432 3678999999999999999999999999999999997 6
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCC----CCCChhhH---HHHHHHHHHHHHhcCCCEEEeCCccch-hchHHHH
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAP----KVSNQLGL---EAAVEATADFLNKAVKPVLVGGPNIRV-AKAQKAF 255 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~L~~a~rpvI~~G~g~~~-~~a~~~l 255 (431)
|||.+++|.|++..- ...+-+....++. .....+++ ...+++++++|+.||||||++|+|+.. ++...+|
T Consensus 242 GPVLVDlPKDvta~~--l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL 319 (675)
T KOG4166|consen 242 GPVLVDLPKDVTAQL--LIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLL 319 (675)
T ss_pred CCeEeeCcHHHHHHH--hcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHH
Confidence 999999999997631 1111111111110 00001122 367999999999999999999999975 4567899
Q ss_pred HHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcc------
Q 014091 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK------ 329 (431)
Q Consensus 256 ~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~------ 329 (431)
.+|.|+++|||.||.+|.|.+|+++++.+-++ |+.|.-.+|.+++++|+||++|.||+++.|++.+.|.+.++
T Consensus 320 ~~fser~qIPVtttL~GLGs~d~~d~lSLhML-GMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~ 398 (675)
T KOG4166|consen 320 GRFSERTQIPVTTTLMGLGSYDCDDELSLHML-GMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEG 398 (675)
T ss_pred HHHHHhhcCcceehhhcccCcCCCCchhhhhh-cccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhcc
Confidence 99999999999999999999999999999995 99999999999999999999999999999999888887766
Q ss_pred ---eEEEccCceeecCCCcccc----ccHHHHHHHHHHHhccccc-hhhhhhh-cc-CCCCCCC---CCCCCCCcCHHHH
Q 014091 330 ---AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNTT-ALENYRR-IY-VPPGIPV---KRAQNEPLRVNVL 396 (431)
Q Consensus 330 ---~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~-~~~~~~~-~~-~~~~~~~---~~~~~~~l~~~~~ 396 (431)
+||+|++|..++ +...+. -|+...|+.+...++.... .+..|.. ++ +++..+. +...++.|.|+++
T Consensus 399 rggIiHfdispknIg-Kvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~v 477 (675)
T KOG4166|consen 399 RGGIIHFDISPKNIG-KVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYV 477 (675)
T ss_pred cCceEEEecCHHHhC-cccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHH
Confidence 999999999998 544443 3888999988877665432 1122321 10 0111111 2234567999999
Q ss_pred HHHHHhhCCC---CCEEEecCChhhhhcccc
Q 014091 397 FKHIQDMLSG---DTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 397 ~~~L~~~l~~---~~ivv~D~G~~~~~~~~~ 424 (431)
++.|++...+ ..|+.+..|.|.+|+.++
T Consensus 478 Ik~Ldk~t~d~~~kviitTGVGqHQMWAAqf 508 (675)
T KOG4166|consen 478 IKVLDKLTDDTGRKVIITTGVGQHQMWAAQF 508 (675)
T ss_pred HHHHHHhccCcCceEEEeccccHHHHHHHHH
Confidence 9999998865 679999999999997654
No 54
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=8.5e-63 Score=513.95 Aligned_cols=362 Identities=19% Similarity=0.114 Sum_probs=285.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 579999999999999999999999999999999976568999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++||.+++|||+|+|+.++...+++. + +..|+..+|+++|||++++++++++++.|++|++.|+++ +|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA-----P---LTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc-----c---cccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999887655542 2 235889999999999999999999999999999999997 69
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+. +.. +...... ..++++.+++++++|++||||+|++|.|++++++.+++++|||++++
T Consensus 153 PV~l~iP~Dv~~~~~~~--~~~-~~~~~~~---~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~ 226 (514)
T PRK07586 153 VATLILPADVAWSEGGP--PAP-PPPAPAP---AAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGA 226 (514)
T ss_pred cEEEEeccchhcccccc--ccc-cCCCCCC---CCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCC
Confidence 99999999998743211 111 1101111 12356789999999999999999999999998999999999999999
Q ss_pred CeEecC------CCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCce
Q 014091 265 PIAIMP------SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 265 Pv~tt~------~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~ 338 (431)
||+||. +|||+||++|+.+.| +.+++++++|||||++|+++... .+.+. ....++++.+.+..
T Consensus 227 pV~t~~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~vG~~~~~~-~~~~~--~~~~~~~~~~~~~~ 295 (514)
T PRK07586 227 RLLAETFPARMERGAGRPAVERLPYFA--------EQALAQLAGVRHLVLVGAKAPVA-FFAYP--GKPSRLVPEGCEVH 295 (514)
T ss_pred CEEecccccccccCCCCCCcccccchH--------HHHHHHHhcCCEEEEECCCCccc-ccccC--CCccccCCCCceEE
Confidence 999864 599999988876543 35677899999999999996321 11111 11112333333332
Q ss_pred eecCCCccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhh
Q 014091 339 TVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (431)
Q Consensus 339 ~~~~~~~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~ 418 (431)
.+. ....|++.+|++|++.++...... ..... . . ......++++.+++++|++.+|++++++.|+|++.
T Consensus 296 ~~~----~~~~d~~~~l~~L~~~l~~~~~~~-~~~~~--~--~--~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 296 TLA----GPGEDAAAALEALADALGAKPAAP-PLAAP--A--R--PPLPTGALTPEAIAQVIAALLPENAIVVDESITSG 364 (514)
T ss_pred EEC----CCcccHHHHHHHHHHhhcccccch-hhhhc--c--c--cCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCcCH
Confidence 222 123489999999998776422111 11000 0 0 11123469999999999999999999999999998
Q ss_pred hhcccc
Q 014091 419 FNCQKL 424 (431)
Q Consensus 419 ~~~~~~ 424 (431)
+|..++
T Consensus 365 ~~~~~~ 370 (514)
T PRK07586 365 RGFFPA 370 (514)
T ss_pred HHHHHh
Confidence 876543
No 55
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-62 Score=509.42 Aligned_cols=357 Identities=16% Similarity=0.117 Sum_probs=284.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
++++++|+|++.|+++||+||||+||+++++|+++|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 56899999999999999999999999999999999976568999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCC
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 183 (431)
+++||++||.|++|||+|+|+.++...+++. + +..|+..+++++|||++++++++++++.|+||++.|.++|
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~ 154 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDA-----P---LTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAP 154 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-----c---cccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877555432 1 2348899999999999999999999999999999999975
Q ss_pred -CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 184 -KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 184 -GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
|||||+||.|++..+.+. ...+.+. ..+ ..++++.+++++++|++||||+|++|.|+.++++.+++++|||++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~-~~~~~~~-~~~----~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 228 (518)
T PRK12474 155 GGIATLIMPADVAWNEAAY-AAQPLRG-IGP----APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKT 228 (518)
T ss_pred CCcEEEEechhhhcccccC-CcCCCCC-CCC----CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHH
Confidence 999999999998643211 1111110 111 123467899999999999999999999999888999999999999
Q ss_pred CCCeEec------CCCcccCCC-CCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcc--cc-ccccc-CCCCcceE
Q 014091 263 GYPIAIM------PSGKGLVPE-HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SS-VGYSL-LIKKEKAI 331 (431)
Q Consensus 263 ~~Pv~tt------~~gkg~~~~-~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~--~~-~~~~~-~~~~~~~I 331 (431)
++||++| ++|||+||+ +||++. ...++++++||+||++|++++.. .+ ..+.. +.+..+++
T Consensus 229 g~PV~~t~~~~~~~~gkg~~~~~~~~~~~---------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~ 299 (518)
T PRK12474 229 GVRLYCDTFAPRIERGAGRVPIERIPYFH---------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIV 299 (518)
T ss_pred CCCEEEecCcccccCCCCCCCCcccccch---------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEE
Confidence 9999975 469999995 667652 24567899999999999996421 11 11211 22345677
Q ss_pred EEccCceeecCCCccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 332 IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 332 ~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
+++.. +.|++++|++|++.+.....+...+ .... ......++++..++++|++.+++|+|++
T Consensus 300 ~~~~~-----------~~d~~~~l~~L~~~l~~~~~~~~~~-----~~~~--~~~~~~~i~~~~~~~~l~~~l~~d~iv~ 361 (518)
T PRK12474 300 YLAQP-----------DEDLAQALQDLADAVDAPAEPAART-----PLAL--PALPKGALNSLGVAQLIAHRTPDQAIYA 361 (518)
T ss_pred EECCC-----------CcCHHHHHHHHHHhccccccccccc-----cccc--cCCCCCCcCHHHHHHHHHHHCCCCeEEE
Confidence 76532 2489999999988775422111000 0000 0112346999999999999999999999
Q ss_pred ecCChhhhhcc
Q 014091 412 AETGDSWFNCQ 422 (431)
Q Consensus 412 ~D~G~~~~~~~ 422 (431)
.|+|++..|..
T Consensus 362 ~d~g~~~~~~~ 372 (518)
T PRK12474 362 DEALTSGLFFD 372 (518)
T ss_pred ECCCcCHHHHH
Confidence 99999877754
No 56
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=1.8e-61 Score=509.77 Aligned_cols=382 Identities=15% Similarity=0.134 Sum_probs=288.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.++++++|++.|+++||++|||+||+++++|++++.++++|++|.+|||++|+||||||+|+|| ++||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 3889999999999999999999999999999999976567999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCc--chHHHHHHHHHHH---h
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAIST---A 179 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~--~~~~~~i~~A~~~---A 179 (431)
++||++||.+++|||+|+|++++...+++. .|..||.++++++|++..+..+. +.+.+.++++++. |
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~--------~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a 159 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGA--------NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAA 159 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCC--------CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999999987666542 23468999999999877766544 3344445545554 6
Q ss_pred hhC-CCcEEEEEccCCCCCCCC-CCCCCC--CCccCCCC--C-CChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchH
Q 014091 180 LKE-SKPVYISISCNLPGIPHP-TFARDP--VPFFLAPK--V-SNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ 252 (431)
Q Consensus 180 ~~~-~GPv~l~iP~dv~~~~~~-~~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~ 252 (431)
.++ +|||||+||.|++..... .....+ .+...... . ....+.+..+++++++|++ |||+|++|.|+++ +.
T Consensus 160 ~~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~--~~ 236 (568)
T PRK07449 160 QTLQAGPVHINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAE--EG 236 (568)
T ss_pred cCCCCCCEEEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChH--HH
Confidence 555 699999999999653211 000000 01100000 0 0012245678999999998 9999999999986 34
Q ss_pred HHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEE
Q 014091 253 KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (431)
Q Consensus 253 ~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~ 332 (431)
+++.+|||++|+||++|++||+.+|++||+++|++.+..+++.+++++++||+||++|+++++..+..|... .+.++||
T Consensus 237 ~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~-~~~~~i~ 315 (568)
T PRK07449 237 QAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLAD-CEPEYWV 315 (568)
T ss_pred HHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhc-CCCCEEE
Confidence 999999999999999999999999999999999974444666778889999999999999976665555322 2348999
Q ss_pred EccCceeecCCCccc----cccHHHHHHHHHHHhccccchhhhhhhccCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCC
Q 014091 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGD 407 (431)
Q Consensus 333 Id~d~~~~~~~~~~~----~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~L~~~l~~~ 407 (431)
||.|+.+++ ..+.. ..|++.+|++ .+... ...|...+......... ........++++..++++|++.+|++
T Consensus 316 id~d~~~~~-~~~~~~~~i~~d~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~ 392 (568)
T PRK07449 316 VDPGPGRLD-PAHHATRRLTASVATWLEA-HPAEK-RKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPEG 392 (568)
T ss_pred ECCCCCcCC-CCCCceEEEEEcHHHHHHh-ccccc-chHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCC
Confidence 999999887 33322 2389999998 32211 11122211111000000 00001234699999999999999999
Q ss_pred CEEEecCChhhhhcc
Q 014091 408 TAVIAETGDSWFNCQ 422 (431)
Q Consensus 408 ~ivv~D~G~~~~~~~ 422 (431)
+++++|.|++.+|..
T Consensus 393 ~iv~~~~g~~~~~~~ 407 (568)
T PRK07449 393 GQLFVGNSLPVRDVD 407 (568)
T ss_pred CeEEEECcHHHHHHH
Confidence 999999999877654
No 57
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.4e-56 Score=415.78 Aligned_cols=382 Identities=16% Similarity=0.219 Sum_probs=317.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (431)
+|+..|+-+-.|++.||++.||+||..+.||+.+|.+..+|+.|+.||-.+|.+||+||.|.. | +|||+.||||..+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 467889999999999999999999999999999999888899999999999999999999986 6 89999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||+.|++|++|+++||||.|+....+. ++|..|...+.+|++||+..+..|..++.++++||....++
T Consensus 83 mitglysa~adsipilcitgqaprarl~ke--------dfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~r 154 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKE--------DFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGR 154 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchh--------hhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCC
Confidence 999999999999999999999998754432 23456889999999999999999999999999999999997
Q ss_pred CCcEEEEEccCCCCCCCCCCCC--CCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTFAR--DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
||||.|++|.|+|..+.+.+.. +|.+. . .+.....+.++++.+|..++||+|++|+|+...++.+.+.+|||
T Consensus 155 pgpvlidlp~dvq~aeiefd~d~yepl~~----~--kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efae 228 (592)
T COG3960 155 PGPVLIDLPFDVQVAEIEFDPDMYEPLPV----Y--KPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAE 228 (592)
T ss_pred CCCeEEecccceEEEEEecCccccCcCCc----C--CchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHH
Confidence 6999999999998753221111 11111 1 12345667889999999999999999999999999999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCC-CCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCcee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGA-VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~-~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~ 339 (431)
..|+||+.|.||-|++|+|||+..|+. |. .++...|..+.++|+|+.||.||...-|++...+.++.|+||+|++|..
T Consensus 229 l~gvpviptlmgwg~ipddhplmagm~-glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptq 307 (592)
T COG3960 229 LTGVPVIPTLMGWGCIPDDHPLMAGMV-GLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQ 307 (592)
T ss_pred HcCCcccchhccccccCCcchhhcccc-cceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccc
Confidence 999999999999999999999999995 65 6777788888999999999999988888877777789999999999999
Q ss_pred ecCCCccccc----cHHHHHHHHHHHhcccc-----chhhhhhh---ccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCC
Q 014091 340 VGNGPSLGWV----FMADFLSALAKKLRKNT-----TALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (431)
Q Consensus 340 ~~~~~~~~~~----d~~~~L~~L~~~l~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~ 407 (431)
+| +...+++ |.++.|+.+++.....+ ..|..|.+ .+..+......-.+-|+.|+++++++++.++.|
T Consensus 308 ig-rvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd 386 (592)
T COG3960 308 IG-RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRD 386 (592)
T ss_pred cc-eeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCc
Confidence 97 4444543 78889998877543221 12334421 111111111112346899999999999999999
Q ss_pred CEEEecCChhhhhccc
Q 014091 408 TAVIAETGDSWFNCQK 423 (431)
Q Consensus 408 ~ivv~D~G~~~~~~~~ 423 (431)
.-.++-.|.+.+...+
T Consensus 387 ~~yvstiglsqia~aq 402 (592)
T COG3960 387 VCYVTTIGLSQIAAAQ 402 (592)
T ss_pred eeEEEeccHHHHhhhh
Confidence 9999999999885443
No 58
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=3.6e-55 Score=502.97 Aligned_cols=379 Identities=15% Similarity=0.111 Sum_probs=286.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
..++++|++.|+++||+||||+||+++++|++++.++++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 558999999999999999999999999999999976567999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchH------HHHHHHHHHHh
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA------HELIDTAISTA 179 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~------~~~i~~A~~~A 179 (431)
+||++|+.+++|||+|||++++...+++. .|..||..+|+++|||++++.+++++ .+.+++|++.|
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga--------~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A 452 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGA--------NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWA 452 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCC--------CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776652 23468999999999999999999993 58999999999
Q ss_pred hhC-CCcEEEEEccCCCCCCCCCCC------------CCCCCc-cCC--CCCCChhhHHHHHHHHHHHHHhcCCCEEEeC
Q 014091 180 LKE-SKPVYISISCNLPGIPHPTFA------------RDPVPF-FLA--PKVSNQLGLEAAVEATADFLNKAVKPVLVGG 243 (431)
Q Consensus 180 ~~~-~GPv~l~iP~dv~~~~~~~~~------------~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G 243 (431)
+++ +|||||+||.|.......... ....+. ... .......+.++.+++++++|++||||+|++|
T Consensus 453 ~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG 532 (1655)
T PLN02980 453 TSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIG 532 (1655)
T ss_pred hCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEc
Confidence 997 599999999754221110000 000000 000 0000011345679999999999999999999
Q ss_pred CccchhchHHHHHHHHHHhCCCeEecCCC-c------ccCCC--CCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccC
Q 014091 244 PNIRVAKAQKAFIELADATGYPIAIMPSG-K------GLVPE--HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (431)
Q Consensus 244 ~g~~~~~a~~~l~~lae~~~~Pv~tt~~g-k------g~~~~--~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~ 314 (431)
.|+..+++. ++.+|||++++||++|+++ | |+||+ +||+++|++ |..........+.++|+||+||++++
T Consensus 533 ~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~-g~~~~~~~~~~~~~aDlVl~iG~rl~ 610 (1655)
T PLN02980 533 AIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHL-DHALLSDSVRNWIQFDVVIQIGSRIT 610 (1655)
T ss_pred CCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchH-HHHhCchhhhccCCCCEEEEeCCccc
Confidence 998765555 5689999999999999974 5 99999 899999986 54222224556789999999999997
Q ss_pred cc-cccccccCCCCcceEEEccCceeecCCCcccc----ccHHHHHHHHHHHhccc--cchhhhhhhccCC--CCCCCCC
Q 014091 315 DY-SSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKN--TTALENYRRIYVP--PGIPVKR 385 (431)
Q Consensus 315 ~~-~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~--~~~~~~~~~~~~~--~~~~~~~ 385 (431)
+. .+..+..+.+ .++||||+|+.+++ .....+ .|++.++++|.+..... ..|...+...... .......
T Consensus 611 s~~~t~~~~~~~~-~~~I~ID~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 688 (1655)
T PLN02980 611 SKRVSQMLEKCFP-FSYILVDKHPCRHD-PSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQI 688 (1655)
T ss_pred cHHHHHHHHhCCC-CeEEEECCCCCccC-CcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 43 3333332333 35999999999987 333222 38999999987643321 1122222211000 0000000
Q ss_pred CCCCCcCHHHHHHHHHhhCCCCCEEEecCChh
Q 014091 386 AQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (431)
Q Consensus 386 ~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~ 417 (431)
....++++..+++.|++.||+|++++.|+|++
T Consensus 689 ~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ 720 (1655)
T PLN02980 689 HAESSLTEPYVAHVISEALTSDSALFIGNSMA 720 (1655)
T ss_pred hcCCCcchHHHHHHHHHhCCCCCeEEEECcHH
Confidence 11235889999999999999999999999875
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-47 Score=363.04 Aligned_cols=385 Identities=18% Similarity=0.211 Sum_probs=305.2
Q ss_pred CCcccHHHHHHHHHHHcC---------CCEEEecCCCch-HHHHHhhhcCC-CceEEecCchhHHHHhhhhhhhhcC---
Q 014091 24 ASVGTLGRHLARRLVEIG---------AKDVFSVPGDFN-LTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRG--- 89 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~G---------V~~vFgvpG~~~-~~l~~al~~~~-~i~~v~~~hE~~A~~~A~gyar~tg--- 89 (431)
+.++|.+|+|+++|.++= |.-||.|-|..+ ..+-+||++.+ .+.+...+|||+-+++|-+|+|...
T Consensus 4 TvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr 83 (617)
T COG3962 4 TVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRR 83 (617)
T ss_pred eehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhce
Confidence 467899999999998874 345788888665 57889998754 4999999999999999999999875
Q ss_pred ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC-hHHHHHHHhhheeeEEEcCCcchH
Q 014091 90 VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD-FTQELRCFQAITCSQAVVNNLGDA 168 (431)
Q Consensus 90 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~k~~~~v~~~~~~ 168 (431)
.-+|-.+.|||++|++++.+.|..+++|+|+|-|+.-.. ++.++.||..-+..+ ..-..+.|+|++||-.||++||++
T Consensus 84 ~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~-R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl 162 (617)
T COG3962 84 IYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT-RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQL 162 (617)
T ss_pred eeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc-cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHH
Confidence 468888899999999999999999999999999998655 556666654332221 112357899999999999999999
Q ss_pred HHHHHHHHHHhhhC--CCcEEEEEccCCCCCCCCCCCCC----CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEe
Q 014091 169 HELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARD----PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVG 242 (431)
Q Consensus 169 ~~~i~~A~~~A~~~--~GPv~l~iP~dv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~ 242 (431)
-..+.||++..... .|||.|.||+||+.+. .+.+. +.-+.... +.+++..++.++++|+++|||+|++
T Consensus 163 ~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA--~Dyp~~FF~~rv~~~rR----~~Pd~~eL~~A~~lik~ak~PlIva 236 (617)
T COG3962 163 MSALPRAMRVMTDPADCGPVTLALCQDVQAEA--YDYPESFFEKRVWRIRR----PPPDERELADAAALIKSAKKPLIVA 236 (617)
T ss_pred HHHHHHHHHHhCChhhcCceEEEechhhhhhh--cCCcHHhhhhhhhhccC----CCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999886 4999999999998742 11111 11111211 2346778999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccc
Q 014091 243 GPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS 322 (431)
Q Consensus 243 G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~ 322 (431)
|+|+..+++.++|++|+|..|+||+.|..|||.++.+||+.+|.. |..|..++|.+.++||+||.||+|+.+++|++|.
T Consensus 237 GGGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~v-GvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~a 315 (617)
T COG3962 237 GGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKA 315 (617)
T ss_pred cCceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccc-cccchHHHHhhhhhcCEEEEecccccccccccHH
Confidence 999999999999999999999999999999999999999999994 9999999999999999999999999999999998
Q ss_pred cCC-CCcceEEEccCceeecCCCcccc-ccHHHHHHHHHHHhccccc---hhhhhhhc---cCCCCCC-CCCCC--CCCc
Q 014091 323 LLI-KKEKAIIVQPHRVTVGNGPSLGW-VFMADFLSALAKKLRKNTT---ALENYRRI---YVPPGIP-VKRAQ--NEPL 391 (431)
Q Consensus 323 ~~~-~~~~~I~Id~d~~~~~~~~~~~~-~d~~~~L~~L~~~l~~~~~---~~~~~~~~---~~~~~~~-~~~~~--~~~l 391 (431)
.|. ++.|+|.|+..+..-.+..-++. .|.+..|++|.+.|...+. |.++..+. +..+... ..... +.-.
T Consensus 316 lF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~p 395 (617)
T COG3962 316 LFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLP 395 (617)
T ss_pred HhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCc
Confidence 764 78899999988776542223333 3899999999999886442 21111111 1111111 11111 1224
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCh
Q 014091 392 RVNVLFKHIQDMLSGDTAVIAETGD 416 (431)
Q Consensus 392 ~~~~~~~~L~~~l~~~~ivv~D~G~ 416 (431)
+..+++-.+++..+++++|++-+|+
T Consensus 396 tq~~vigav~~~~~~~svvvcAAGs 420 (617)
T COG3962 396 TQTQVIGAVQRTISDDSVVVCAAGS 420 (617)
T ss_pred cchhHHHHHHhhcCCCcEEEEeCCC
Confidence 5678999999999999999999997
No 60
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=1e-43 Score=314.51 Aligned_cols=161 Identities=25% Similarity=0.404 Sum_probs=150.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHH
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~ 106 (431)
|++++|++.|+++||++|||+||+++++|++++.+.++|++|.+|||++|+||||||+|++| ++||++|+|||.+|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 57999999999999999999999999999999976568999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcE
Q 014091 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv 186 (431)
|+++||.|++|||+|+|+.++...+++ .+ |..|+.++++++|||++++++++++++.+++|++.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTD-----YF---QEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCC-----CC---cccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999998866554 22 2348999999999999999999999999999999999888999
Q ss_pred EEEEccCCCC
Q 014091 187 YISISCNLPG 196 (431)
Q Consensus 187 ~l~iP~dv~~ 196 (431)
||+||.|++.
T Consensus 153 ~l~iP~dv~~ 162 (164)
T cd07039 153 VLILPGDVQD 162 (164)
T ss_pred EEEeChHHhc
Confidence 9999999976
No 61
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=4.2e-42 Score=303.75 Aligned_cols=162 Identities=52% Similarity=0.867 Sum_probs=150.4
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl~~ 110 (431)
|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.+|||++|+||||||+|.|+++||++|+|||.+|+++||++
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~ 80 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG 80 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH
Confidence 57999999999999999999999999999976558999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEE
Q 014091 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (431)
Q Consensus 111 A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~i 190 (431)
|+.|++|||+|+|++++...+++..+|+.++..++.|+.++++++|||++++++++++++.+++|++.|.+++|||||+|
T Consensus 81 A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 81 AYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999998888877667765543345578999999999999999999999999999999999889999999
Q ss_pred cc
Q 014091 191 SC 192 (431)
Q Consensus 191 P~ 192 (431)
|.
T Consensus 161 P~ 162 (162)
T cd07038 161 PR 162 (162)
T ss_pred cC
Confidence 95
No 62
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=1.5e-41 Score=298.48 Aligned_cols=154 Identities=23% Similarity=0.282 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 109 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~ 109 (431)
++|++.|+++||++|||+||+++++|++++.++++|++|.+|||++|+||||||+|+|| ++||++|+|||.+|+++||+
T Consensus 1 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~ 80 (162)
T cd07037 1 QALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV 80 (162)
T ss_pred ChHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH
Confidence 37899999999999999999999999999976568999999999999999999999999 99999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcch------HHHHHHHHHHHhhhC-
Q 014091 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALKE- 182 (431)
Q Consensus 110 ~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~i~~A~~~A~~~- 182 (431)
+|+.+++|||+|+|+.++...+++ .+ |..|+..+++++|||+.+++++++ +++.+++|++.|.++
T Consensus 81 ~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~ 152 (162)
T cd07037 81 EAYYSGVPLLVLTADRPPELRGTG-----AN---QTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAP 152 (162)
T ss_pred HHHhcCCCEEEEECCCCHHhcCCC-----CC---cccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998765554 22 336889999999999999999999 999999999999997
Q ss_pred CCcEEEEEcc
Q 014091 183 SKPVYISISC 192 (431)
Q Consensus 183 ~GPv~l~iP~ 192 (431)
||||||+||.
T Consensus 153 ~GPv~l~iP~ 162 (162)
T cd07037 153 PGPVHLNLPF 162 (162)
T ss_pred CCCEEEeccC
Confidence 5999999994
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=3.2e-40 Score=295.36 Aligned_cols=164 Identities=32% Similarity=0.460 Sum_probs=147.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
||++|+|++.|+++||++|||+||+.+.+|+++|.++++|++|.+|||++|+|||+||+|++| ++||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 789999999999999999999999999999999998668999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
++|++|+.+++|||+|+|+++....+++ .++ +..|+..++++++||++++.+++++++.+++|++.|... +|
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRG-----AFQ--QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTT-----STT--SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTS
T ss_pred HHHhhcccceeeEEEEecccchhhhccc-----ccc--cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999998877643 222 245899999999999999999999999999999999664 79
Q ss_pred cEEEEEccCCCCC
Q 014091 185 PVYISISCNLPGI 197 (431)
Q Consensus 185 Pv~l~iP~dv~~~ 197 (431)
||||+||.|++..
T Consensus 154 Pv~l~ip~dv~~~ 166 (172)
T PF02776_consen 154 PVYLEIPQDVQEA 166 (172)
T ss_dssp EEEEEEEHHHHTS
T ss_pred cEEEEcChhHhhC
Confidence 9999999999874
No 64
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=2.8e-34 Score=252.67 Aligned_cols=153 Identities=28% Similarity=0.382 Sum_probs=142.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 109 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~ 109 (431)
++|++.|+++||+++||+||+.+.+|++++. ++++++|.++||.+|++||+||+|.+| ++||++|+|||.+|++++|.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 4799999999999999999999999999998 468999999999999999999999999 99999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CCcEEE
Q 014091 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYI 188 (431)
Q Consensus 110 ~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l 188 (431)
+|+.+++|||+|+|+++....++.. + +..|+..++++++||+.++++++++.+.+++|++.|.+. +|||||
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~-----~---q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGA-----F---QEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCc-----c---cccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999988665541 2 235889999999999999999999999999999999998 699999
Q ss_pred EEcc
Q 014091 189 SISC 192 (431)
Q Consensus 189 ~iP~ 192 (431)
+||.
T Consensus 152 ~ip~ 155 (155)
T cd07035 152 DLPK 155 (155)
T ss_pred EecC
Confidence 9994
No 65
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-32 Score=270.27 Aligned_cols=372 Identities=16% Similarity=0.128 Sum_probs=264.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
...+..+++.|.++||++++-+||+.+.||--++.++++|++..-.+|++|+|+|.|-|+.++ |.++++|||..++|+.
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 458899999999999999999999999999999998889999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchH-------HHHHHHHHHH
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA-------HELIDTAIST 178 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~-------~~~i~~A~~~ 178 (431)
+++.||...++|+|++|+++|.+.++.+ .+|.+||..+|..+++|+..+..|+.- ...-.+++..
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~G--------AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCG--------ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCC--------CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988765 467899999999999999999888753 3333445555
Q ss_pred hhhC-CCcEEEEEccCCCCCCCCCCCC-CCCCccCCC--------CCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 179 ALKE-SKPVYISISCNLPGIPHPTFAR-DPVPFFLAP--------KVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 179 A~~~-~GPv~l~iP~dv~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
|++. +|||||++|.+.... +...+ ........+ .+.......+.+.+ .+. -.+||.+|++|.....
T Consensus 160 a~~~~~GpVHiN~PfrePL~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~rgviv~G~~~~~ 235 (566)
T COG1165 160 ARTPHAGPVHINVPFREPLV--PDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-WFF-WRQKRGVIVAGRMSAQ 235 (566)
T ss_pred ccCCCCCceEecCCCCccCC--CCCCccccccccccccCchhhcCCceeeecccccccc-hhh-hcccCceEEEecCchh
Confidence 5444 599999999987553 22111 000000000 00000000122222 222 3569999999987754
Q ss_pred hchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCc
Q 014091 249 AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKE 328 (431)
Q Consensus 249 ~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~ 328 (431)
..+.+.++++.+++|+++.+.+. -+++ +..|..+..++.+.+.+.. |.||.+|.++.+.....|-......
T Consensus 236 --e~~~i~~~a~~lg~PilaDplS~-----lr~~-i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~~~~ 306 (566)
T COG1165 236 --EGKGILALANTLGWPILADPLSP-----LRNY-IPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADTEPI 306 (566)
T ss_pred --hhHHHHHHHHHhCCceecccccc-----cCCC-cccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhccCCC
Confidence 55669999999999999988742 1111 3334444556566666554 9999999999877666665544457
Q ss_pred ceEEEccCceeecCCCc---cccccHHHHHHHHHHHhccccchhhhhhhccCCC--CCCCCCCCCCCcCHHHHHHHHHhh
Q 014091 329 KAIIVQPHRVTVGNGPS---LGWVFMADFLSALAKKLRKNTTALENYRRIYVPP--GIPVKRAQNEPLRVNVLFKHIQDM 403 (431)
Q Consensus 329 ~~I~Id~d~~~~~~~~~---~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~L~~~ 403 (431)
+++.||.....+.+... ....++..+++.+......++.|..+|.....+. ...... .+..+....+..+|.+.
T Consensus 307 ~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~-~~~~~~e~~~a~~l~~~ 385 (566)
T COG1165 307 EYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQL-AAEALTEAHLAAALADL 385 (566)
T ss_pred cEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHh-cccCchhhHHHHHHHHh
Confidence 89999887765542211 1224778888766433332333444553221100 000011 11257788999999999
Q ss_pred CCCCCEEEecCChhhhh
Q 014091 404 LSGDTAVIAETGDSWFN 420 (431)
Q Consensus 404 l~~~~ivv~D~G~~~~~ 420 (431)
||+++.++..+.....+
T Consensus 386 lp~~~~LFvgNSmpVRd 402 (566)
T COG1165 386 LPPQDQLFVGNSMPVRD 402 (566)
T ss_pred CCCCCeEEEecCchhhh
Confidence 99999999988876443
No 66
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.98 E-value=1.5e-31 Score=236.60 Aligned_cols=154 Identities=19% Similarity=0.087 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhc----CCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA----EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
++|+|++.|+++||+++||+||+.+.+|+++|.+ ..+|++|.+|||++|++||+||+|.++. +|++|+|||++|+
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~ 79 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLM 79 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHH
Confidence 4799999999999999999999999999999964 4589999999999999999999997668 9999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
+++|++|+.+++|||+|+|+.+....+.. +.. ++-.|+..++++ +||+.++.+++++++.+++|++.|.+.++
T Consensus 80 ~~~l~~a~~~~~P~v~i~g~~~~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~ 152 (160)
T cd07034 80 AEALYLAAGAELPLVIVVAQRPGPSTGLP---KPD---QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRL 152 (160)
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCCCCCCC---CcC---cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888754320 111 123578899999 99999999999999999999999999889
Q ss_pred cEEEEE
Q 014091 185 PVYISI 190 (431)
Q Consensus 185 Pv~l~i 190 (431)
||+|.+
T Consensus 153 Pv~l~~ 158 (160)
T cd07034 153 PVIVLS 158 (160)
T ss_pred CEEEEc
Confidence 999875
No 67
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.97 E-value=4.3e-30 Score=225.53 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=140.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl~~ 110 (431)
++|++.|+++||+++||+||+...++++++.+.++++++.++||++|++||+||+|.+++++|++++|||.+|+++++.+
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~ 80 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD 80 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987678999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEE
Q 014091 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (431)
Q Consensus 111 A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~i 190 (431)
|+.+++|||+|+++++....+.+ . ++..|+..++++++||...+.+++++.+.+.+|++.|.+.+|||||++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~-----~---~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQ-----T---FQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccC-----c---ccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999887643332 1 233578899999999999999999999999999999988899999999
Q ss_pred cc
Q 014091 191 SC 192 (431)
Q Consensus 191 P~ 192 (431)
|.
T Consensus 153 p~ 154 (154)
T cd06586 153 PR 154 (154)
T ss_pred cC
Confidence 84
No 68
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.96 E-value=5e-28 Score=211.83 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEE-ecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAI 108 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl 108 (431)
|+|++.|+++||++|||+||+.+++|++++.. +|++| .+|||+++++||++| |.+| ++||++++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 49999 899999999999999 8888 78888888866 999999
Q ss_pred HHhh-hcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEE
Q 014091 109 AGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (431)
Q Consensus 109 ~~A~-~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~ 187 (431)
++|+ .+++|||+|+|++.+....... |-..+ . . +...+..+--+++++++++++ ..+++|++.|.+.+|||+
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g--~-~-~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~ 149 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPA--QIPMG--R-A-TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVA 149 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCcc--ccchh--h-h-hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEE
Confidence 9999 9999999999998773211100 00011 0 0 122223333378999999999 999999999999999999
Q ss_pred EEEccCC
Q 014091 188 ISISCNL 194 (431)
Q Consensus 188 l~iP~dv 194 (431)
|.++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9999876
No 69
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.94 E-value=9.8e-27 Score=200.35 Aligned_cols=132 Identities=32% Similarity=0.554 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESAD 304 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD 304 (431)
|++++++|++||||+|++|.+++++++.+++++|+|++|+||++|+++||+||++||+|+|. .|..+++.+++++++||
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~-~g~~~~~~~~~~l~~aD 79 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGY-LGLFGSPAANEALEQAD 79 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEE-SCGGSCHHHHHHHHHSS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhccc-CCccCCHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999994 69889999999999999
Q ss_pred EEEEeCCccCccccccc-ccCCCCcceEEEccCceeecCCCcccc----ccHHHHHHHH
Q 014091 305 AYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSAL 358 (431)
Q Consensus 305 ~vl~lG~~~~~~~~~~~-~~~~~~~~~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L 358 (431)
+||++|++++++.+.++ ..+.++.++||||.|+.+++ .++.++ .|++.+|++|
T Consensus 80 lvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~-~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 80 LVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIG-KNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTT-SSSEESEEEESHHHHHHHHH
T ss_pred EEEEECCCCccccccccccccCCCCEEEEEECCHHHhC-CCCCCCEEEEECHHHHhhCC
Confidence 99999999998877654 34555569999999999997 545443 3899999886
No 70
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.61 E-value=2.6e-15 Score=131.63 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCCEEEeCCccch-hchHHHHHHHHHHhCCCeEecCC------CcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 226 EATADFLNKAVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPS------GKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~------gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
++++++|++||||+|++|.|++. .++.+++++|+|++++||++|++ +||++|+ |+++|.. |..+.....+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~l-g~~~~~p~~e 101 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHEL-TNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHH-HhhccCchhh
Confidence 57889999999999999999987 77899999999999999999999 9999998 9999995 7777778888
Q ss_pred Hh---hhCCEEEEeCCccCcccc--cccccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHH
Q 014091 299 IV---ESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKK 361 (431)
Q Consensus 299 ~~---~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~ 361 (431)
.+ .++|+||.+|+++.-.+. .....|.+ .|.|.|+.....-. ...|+.++-++.++.|.+.
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~~y~~~a-~~s~~~~~~~~~~~~l~~l 167 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDRYYHPNA-DMSFPNLSKEEYLEYLDEL 167 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecCCcCCCC-ceecCCCCHHHHHHHHHHH
Confidence 88 799999999999863322 12223444 77777775442111 3456666656666666543
No 71
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.59 E-value=4.1e-15 Score=129.49 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCC------cccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG------KGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g------kg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
++++++|++||||+|++|.|+.+.++.+++++|+|++++||++|+++ ||++ +||.++|.. |..+.....+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~-g~~~~~p~~e~ 94 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEI-TQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHH-HHhccCchhhh
Confidence 57889999999999999999998889999999999999999999998 9999 778888884 77777788888
Q ss_pred h---hhCCEEEEeCCccCccccccc---ccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHHh
Q 014091 300 V---ESADAYVFVGPIFNDYSSVGY---SLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (431)
Q Consensus 300 ~---~~aD~vl~lG~~~~~~~~~~~---~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l 362 (431)
+ .++|+||.+|+++. +..... ..|. +.|.|.|+.-.. -.....|+.+.-+++++.|.+.+
T Consensus 95 ~~g~g~~DlvlfvG~~~y-~~~~~ls~lk~f~-~~~~i~l~~~y~-pnA~~Sf~n~~~~~~~~~l~~~~ 160 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIYY-YLSQMLSSLKHFS-HIVTIAIDKYYQ-PNADYSFPNLSKDEYLDYLRKLL 160 (162)
T ss_pred ccCCCCcCEEEEeCCcch-HHHHHHHHHHhhc-CcEEEEecCCCC-CCCceeccccCHHHHHHHHHHHh
Confidence 8 89999999999983 222112 2233 566777763221 11134566665566666665543
No 72
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.48 E-value=6.9e-13 Score=131.28 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=121.4
Q ss_pred CCCEEEecCCCchHHHHHhhhc-CCCceEEecCchhHHHHhhhhhhhhcC-c-cEEEEeCCcc-hHHHHHHHHHhhhcCC
Q 014091 41 GAKDVFSVPGDFNLTLLDHLIA-EPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVG-GLSVLNAIAGAYSENL 116 (431)
Q Consensus 41 GV~~vFgvpG~~~~~l~~al~~-~~~i~~v~~~hE~~A~~~A~gyar~tg-~-gv~~~t~GpG-~~n~~~gl~~A~~~~~ 116 (431)
||++++|+|++...+|++.+.+ .+.+++|.+.||..|+.+|.||+..|| . .|.+..||.| ..|.++.|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999984 458999999999999999999999988 4 6777999999 5588888888999999
Q ss_pred cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhh-eeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 117 PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 117 Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
|+++|+|.+..... .+...|..+|. -...+++.+ .+|...-++.++..+.+++|++.+.....|+.|.|+.+.+
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G~----~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQGR----ITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHhH----HHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 99999999876521 22233333331 123455554 3454443667889999999999999999999999999997
Q ss_pred C
Q 014091 196 G 196 (431)
Q Consensus 196 ~ 196 (431)
.
T Consensus 156 ~ 156 (361)
T TIGR03297 156 A 156 (361)
T ss_pred c
Confidence 5
No 73
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.93 E-value=1e-08 Score=85.04 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=124.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++..+++.+.|++.||++.+.+|.+..-.++.-+.+++.|.-|-+..|..+...+.|-+.+.+ ++..+..||-| |.
T Consensus 3 kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlG--Ns 80 (172)
T COG4032 3 KVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLG--NS 80 (172)
T ss_pred ccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccCcc--hH
Confidence 5789999999999999999999999999999998888888888876666666666667666666 89999988877 77
Q ss_pred HHHHHHhhh-cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCC
Q 014091 105 LNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (431)
Q Consensus 105 ~~gl~~A~~-~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 183 (431)
+|+|+.-+. .++|++.|.+.+.....+-.. |-.+|. -.-.+.+.+---.+.+.+|++..+.|..|+..|....
T Consensus 81 iNal~SL~~ty~iPl~ml~ShRG~~~E~i~A--QVpmGr----~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s 154 (172)
T COG4032 81 INALASLYVTYKIPLLMLASHRGVLKEGIEA--QVPMGR----ALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS 154 (172)
T ss_pred HHHHHHHHHHhccchhhhhhccchhhcCCcc--ccccch----hhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC
Confidence 777776654 799999999887654333211 001221 1234444444456788999999999999999999988
Q ss_pred CcEEEEEccCCCC
Q 014091 184 KPVYISISCNLPG 196 (431)
Q Consensus 184 GPv~l~iP~dv~~ 196 (431)
.||-+.+...++.
T Consensus 155 ~pv~vlls~~~We 167 (172)
T COG4032 155 RPVAVLLSPKYWE 167 (172)
T ss_pred CceEEEechHHhh
Confidence 9999888766643
No 74
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.90 E-value=2.1e-06 Score=91.38 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (431)
.|++.++++..+...|++.++|+||+...++.+.|.+. .++.++..-+|.+|..||-|-+. +|.=++..|+|||..
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~-aG~ra~t~ts~~Gl~ 82 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAW-SGLRAFCTMKHVGLN 82 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHh-cCcceEEEccCCchh
Confidence 58999999999999999999999999999999988763 35888999999999999988665 464456668999985
Q ss_pred HHHHHHHHhh--hcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHh
Q 014091 103 SVLNAIAGAY--SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 103 n~~~gl~~A~--~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A 179 (431)
=+.=.|..+. --+.|++++.++.+.... +.. +..| .++.-.+.|- ....+++++-+...+||++|
T Consensus 83 ~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~--------~~~--~q~d--~~~~~~~~~~vl~p~~~qE~~d~~~~Af~la 150 (595)
T TIGR03336 83 VAADPLMTLAYTGVKGGLVVVVADDPSMHS--------SQN--EQDT--RHYAKFAKIPCLEPSTPQEAKDMVKYAFELS 150 (595)
T ss_pred hhHHHhhhhhhhcCcCceEEEEccCCCCcc--------chh--hHhH--HHHHHhcCCeEECCCCHHHHHHHHHHHHHHH
Confidence 3333333322 237889999998654321 111 1122 2233334544 34455677888888999999
Q ss_pred hhCCCcEEEEEccCCC
Q 014091 180 LKESKPVYISISCNLP 195 (431)
Q Consensus 180 ~~~~GPv~l~iP~dv~ 195 (431)
...+-||.+..-..+-
T Consensus 151 e~~~~PV~v~~d~~l~ 166 (595)
T TIGR03336 151 EKFGLPVILRPTTRIS 166 (595)
T ss_pred HHHCCCEEEEEeeeec
Confidence 9888999999876553
No 75
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=98.53 E-value=5.3e-07 Score=76.33 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCC------C-----------CCCcceeec
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE------H-----------HPHFIGTYW 288 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~------~-----------hp~~~G~~~ 288 (431)
+-++.+|++||||++++|..+...+..+.+.+|+|+.++|++.|....+.+-+ . +|.|.|. .
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~-d 104 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGF-D 104 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCc-C
Confidence 45678999999999999999987788899999999999999999865442222 1 1333332 1
Q ss_pred CCCCCHHHHHHhhhCCEEEEeCCccCcccc--cccccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHHhc
Q 014091 289 GAVSSSFCGEIVESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 289 G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~ 363 (431)
| + .+.|+||++|++..-.+. .+...| .+.+-|.||.....-. ...|+.++=.++++.|-+.+.
T Consensus 105 g---~-------g~yDlviflG~~~yy~sq~Ls~lKhF-s~i~tiaId~~Y~pnA-d~SFpNl~kde~~~~L~ell~ 169 (170)
T COG1880 105 G---N-------GNYDLVIFLGSIYYYLSQVLSGLKHF-SNIKTIAIDRYYQPNA-DYSFPNLSKDEYLAYLDELLD 169 (170)
T ss_pred C---C-------CCcceEEEEeccHHHHHHHHHHhhhh-hcceEEEeccccCcCc-cccCCCcCHHHHHHHHHHHhc
Confidence 1 1 258999999987642221 122222 2334444443333111 456777766778888766553
No 76
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.47 E-value=7.2e-06 Score=82.14 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=125.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
..+++-++++......|++.++++|++....+.+.|.+. -+..++..-+|.+|..||-|-+.. |.=++..|||||.
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~a-G~Ra~TaTSg~Gl 83 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWA-GAKAMTATSGPGF 83 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhh-CCCeEeecCCCcH
Confidence 347899999999999999999999999999999988753 246899999999999999997765 5336778999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHH-Hh---hheeeEEEcCCcchHHHHHHHHHH
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC-FQ---AITCSQAVVNNLGDAHELIDTAIS 177 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~---~~~k~~~~v~~~~~~~~~i~~A~~ 177 (431)
+=..=++.-|-..++|++++..+++-...+. . +.. +..|+... +. .+-.-.....+++++-....+||+
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~--p---~~~--~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~ 156 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQ--P---TKP--AQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFN 156 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCC--C---CCc--CcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 9999999888888999999999876432221 1 111 22343322 22 333455667788888888999999
Q ss_pred HhhhCCCcEEEEEccCC
Q 014091 178 TALKESKPVYISISCNL 194 (431)
Q Consensus 178 ~A~~~~GPv~l~iP~dv 194 (431)
.|...+-||.+..-.-+
T Consensus 157 lAE~~~~PViv~~D~~l 173 (376)
T PRK08659 157 LAEKYRTPVIVLADEVV 173 (376)
T ss_pred HHHHHCCCEEEEechHh
Confidence 99988889999888744
No 77
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.45 E-value=7.2e-06 Score=81.96 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=124.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
..+++.++++......|++.+.++|++....+.+.|.+. -+.++|.+=+|.+|..||-|-+.. |.=++..|||||.
T Consensus 4 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~a-G~Ra~taTSg~G~ 82 (375)
T PRK09627 4 IISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMS-GVKSMTASSGPGI 82 (375)
T ss_pred eEechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhh-CCCEEeecCCchH
Confidence 458999999999999999999999999999999988652 367899999999999999997765 5336778999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHH-HHh---hheeeEEEcCCcchHHHHHHHHHH
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CFQ---AITCSQAVVNNLGDAHELIDTAIS 177 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~---~~~k~~~~v~~~~~~~~~i~~A~~ 177 (431)
+=..=++.-|...++|++++..+++-...+. . +. .+..|... .++ .+.+......+++++-...-+||+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~--p---~~--~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~ 155 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGL--P---TR--VAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFN 155 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCC--C---Cc--cchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 9988999999999999999998865322221 0 01 11123211 111 334445666777888888889999
Q ss_pred HhhhCCCcEEEEEccCC
Q 014091 178 TALKESKPVYISISCNL 194 (431)
Q Consensus 178 ~A~~~~GPv~l~iP~dv 194 (431)
+|...+-||.+..-..+
T Consensus 156 lAE~~~~PViv~~D~~l 172 (375)
T PRK09627 156 LAERFMTPVFLLLDETV 172 (375)
T ss_pred HHHHHcCceEEecchHH
Confidence 99987889999888755
No 78
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.43 E-value=9.2e-06 Score=80.70 Aligned_cols=161 Identities=13% Similarity=0.029 Sum_probs=124.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
..+++.++++......|++.+.++|++...++++.|.+. -+..||..-+|.+|..||-|-+..... ++..|||||.
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl 83 (352)
T PRK07119 5 VLMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR-VMTSSSSPGI 83 (352)
T ss_pred eeehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC-EEeecCcchH
Confidence 458999999999999999999999999999999988652 246899999999999999997765335 5666799999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh-----hheeeEEEcCCcchHHHHHHHHH
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-----AITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
+=..-+|.-|...++|++++..+++....+ -+.. +..|..-..+ .+-.-.....+++++-+...+||
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g------~t~~--eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af 155 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG------NIQP--SQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAF 155 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC------CCcc--hhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999988886532111 1111 2223222212 22244566677888888999999
Q ss_pred HHhhhCCCcEEEEEccCC
Q 014091 177 STALKESKPVYISISCNL 194 (431)
Q Consensus 177 ~~A~~~~GPv~l~iP~dv 194 (431)
++|...+-||.+..-..+
T Consensus 156 ~lAE~~~~PViv~~D~~l 173 (352)
T PRK07119 156 DLADKYRNPVMVLGDGVL 173 (352)
T ss_pred HHHHHhCCCEEEEcchhh
Confidence 999987789999887755
No 79
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.32 E-value=1.5e-05 Score=84.11 Aligned_cols=165 Identities=16% Similarity=0.059 Sum_probs=126.4
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcc
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (431)
...+++-++++......|++.++++|++....+.+.|.+. .++.++..-+|.+|..||.|-+.. |.=++..|||||
T Consensus 193 ~~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~a-G~Ra~taTSg~G 271 (562)
T TIGR03710 193 RILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYA-GARAMTATSGPG 271 (562)
T ss_pred EEEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhc-CCceeecCCCCC
Confidence 3668999999999999999999999999999999988753 369999999999999999997765 533677799999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHH-HHh---hheeeEEEcCCcchHHHHHHHHH
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CFQ---AITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~---~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
..=+.=+|.-|...++|++++..+++-...+-- +. .+..|... .+. .+-.-.....+++++-....+||
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~-----t~--~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af 344 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLP-----TK--TEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAF 344 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCC-----CC--ccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHH
Confidence 998888999999999999999999874322210 11 12223221 111 11233455567778888888999
Q ss_pred HHhhhCCCcEEEEEccCCCC
Q 014091 177 STALKESKPVYISISCNLPG 196 (431)
Q Consensus 177 ~~A~~~~GPv~l~iP~dv~~ 196 (431)
+.|....-||.+..-.-+..
T Consensus 345 ~lAe~~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 345 NLAEKYQTPVIVLSDQYLAN 364 (562)
T ss_pred HHHHHhcCCEEEEechHHhC
Confidence 99988788999988877644
No 80
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.24 E-value=3.5e-05 Score=78.07 Aligned_cols=159 Identities=15% Similarity=0.021 Sum_probs=122.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-----CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcc
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (431)
.+++-++++......|++.++|+|++....+.+.|.+. -+..+|..-+|.+|..||.|-+.. |.=++..|||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~a-GaRa~TaTS~~G 90 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAA-GGRVATATSSQG 90 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhh-CcCEEeecCcch
Confidence 58999999999999999999999999999999988652 135789999999999999997764 633677789999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
..=+.-+|.-|...++|++++..++.-.. . -. .. .+..|... .+.-........+++++-+...+||+.|.
T Consensus 91 l~lm~E~l~~aa~~~~P~V~~~~~R~~~~--~-~~---i~--~d~~D~~~-~r~~g~ivl~p~s~QEa~d~~~~Af~lAE 161 (407)
T PRK09622 91 LALMVEVLYQASGMRLPIVLNLVNRALAA--P-LN---VN--GDHSDMYL-SRDSGWISLCTCNPQEAYDFTLMAFKIAE 161 (407)
T ss_pred HHHHhhHHHHHHHhhCCEEEEEeccccCC--C-cC---CC--chHHHHHH-HhcCCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888765331 0 00 11 12234333 23333444566777888888899999998
Q ss_pred hC--CCcEEEEEccCC
Q 014091 181 KE--SKPVYISISCNL 194 (431)
Q Consensus 181 ~~--~GPv~l~iP~dv 194 (431)
.. +-||.+..-.-+
T Consensus 162 ~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 162 DQKVRLPVIVNQDGFL 177 (407)
T ss_pred HhccCCCEEEEechhh
Confidence 76 789998887765
No 81
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.23 E-value=5.1e-05 Score=76.26 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=121.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-----CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcc
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (431)
.+++.++++......|++.++++|++...++.+.|.+. -++.|+.+=+|.+|..||.|-+.. |.=++..|||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~a-GaRa~TaTSg~G 83 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAA-GARAFTATSAQG 83 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhh-CCCeEeeeCccc
Confidence 57999999999999999999999999999988888653 258888888999999999997765 533567789999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
.+=+.=+|..|-..++|+++.-.+++-.. .. .+.+ +..|.. ..+.-.-+.....+++++-....+||++|.
T Consensus 84 l~lm~E~l~~aa~~~lPiVi~~~~R~~p~--~~----~~~~--~q~D~~-~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE 154 (390)
T PRK08366 84 LALMHEMLHWAAGARLPIVMVDVNRAMAP--PW----SVWD--DQTDSL-AQRDTGWMQFYAENNQEVYDGVLMAFKVAE 154 (390)
T ss_pred HHHHhhHHHHHHhcCCCEEEEEeccCCCC--CC----CCcc--hhhHHH-HHhhcCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99899999999999999999887765441 11 0111 112322 112222233444677888888889999999
Q ss_pred hCCCcEEEEEccCCC
Q 014091 181 KESKPVYISISCNLP 195 (431)
Q Consensus 181 ~~~GPv~l~iP~dv~ 195 (431)
.-.-||.+....-+.
T Consensus 155 ~~~~PViv~~Dg~~~ 169 (390)
T PRK08366 155 TVNLPAMVVESAFIL 169 (390)
T ss_pred HHCCCEEEEecCccc
Confidence 778999988865443
No 82
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.22 E-value=6.1e-05 Score=75.84 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=121.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-----CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcc
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-----~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (431)
.+++-++++......|++.++++|++....+.+.|.+. -+.+|+.+=+|.+|..||.|-+.. |.=++..|||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~a-GaRa~TaTS~~G 84 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAA-GVRTFTATASQG 84 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhh-CCCeEeeeccch
Confidence 48999999999999999999999999999999888752 257899999999999999997765 533667789999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
.+=+.-.|.-|...++|+++..+++.... .. .+ .+ +..|. ...+..-.......+.+++-...-.||++|.
T Consensus 85 l~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~--~i---~~--d~~D~-~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE 155 (394)
T PRK08367 85 LALMHEVLFIAAGMRLPIVMAIGNRALSA-PI--NI---WN--DWQDT-ISQRDTGWMQFYAENNQEALDLILIAFKVAE 155 (394)
T ss_pred HHHHhhHHHHHHHccCCEEEEECCCCCCC-CC--Cc---Cc--chHHH-HhccccCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765542 10 11 11 22232 2223333333444677788888889999998
Q ss_pred hCC--CcEEEEEccCC
Q 014091 181 KES--KPVYISISCNL 194 (431)
Q Consensus 181 ~~~--GPv~l~iP~dv 194 (431)
..+ -||.+....-+
T Consensus 156 ~~~~~~Pviv~~Dgf~ 171 (394)
T PRK08367 156 DERVLLPAMVGFDAFI 171 (394)
T ss_pred HhCcCCCEEEEechhh
Confidence 765 69998887753
No 83
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.10 E-value=3.6e-05 Score=71.77 Aligned_cols=150 Identities=18% Similarity=0.092 Sum_probs=105.7
Q ss_pred HHHHcCCCEEEecCCCchHHHHHhhhc---CCCc--eEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHH
Q 014091 36 RLVEIGAKDVFSVPGDFNLTLLDHLIA---EPEL--NLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 109 (431)
Q Consensus 36 ~L~~~GV~~vFgvpG~~~~~l~~al~~---~~~i--~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~ 109 (431)
.....|++.++++|++....+++.+.+ ..++ +++..-+|.+|..||-|-+.. | .+. ..|||||..=+.-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~a-G~ra~-t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAA-GARAM-TATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHT-T--EE-EEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhc-CCceE-EeecCCcccccHhHHH
Confidence 356789999999999999998888754 2344 999999999999999998874 5 544 5789999998889999
Q ss_pred HhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEE
Q 014091 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYIS 189 (431)
Q Consensus 110 ~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~ 189 (431)
.+-..++|++++..+++-...+.. +.. +..| .-..+..-.-.....+++++-+....|++.|...+-||.+.
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~-----~~~--~q~D-~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~ 151 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLS-----TQP--EQDD-LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVL 151 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB-------SB---SHH-HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCc-----CcC--ChhH-HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999988765432111 111 2223 23334444555666788889999999999999989999999
Q ss_pred EccCCC
Q 014091 190 ISCNLP 195 (431)
Q Consensus 190 iP~dv~ 195 (431)
...-+.
T Consensus 152 ~Dg~~~ 157 (230)
T PF01855_consen 152 FDGFLC 157 (230)
T ss_dssp EECCCC
T ss_pred echhhh
Confidence 988776
No 84
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.73 E-value=2.4e-05 Score=68.70 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC-CCcccCCCCCCCcceeecCCCCCHHHHHHhh-
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE- 301 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~-~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~- 301 (431)
.++.++++|.+||||++++|..+....-.+.........++|++.|. ..+++-+ ..|-+ +.. .....++
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~~d-~~~ky-~~~-------~~~~~l~~ 93 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGMPD-YRPKY-PKI-------EPENELND 93 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCHCS-SGCCE--HH-------HHHHHCCS
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccccc-ccccc-ccc-------cHHHhcCC
Confidence 34788999999999999999999875445667777778899999987 5566532 22222 221 1112222
Q ss_pred ----------hCCEEEEeCCccCccc--ccccccCCCCcceEEEccCceeecCCCccccccHHH--HHHHHHHH
Q 014091 302 ----------SADAYVFVGPIFNDYS--SVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD--FLSALAKK 361 (431)
Q Consensus 302 ----------~aD~vl~lG~~~~~~~--~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~--~L~~L~~~ 361 (431)
+.|++|.+|...--.+ ......+.+..+.+.++.....-. ...|++++.+. .++.|.+.
T Consensus 94 p~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yhpnA-~~Sf~n~~~e~~~~~~~L~e~ 166 (167)
T PF02552_consen 94 PHWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYHPNA-DMSFPNLSKEKLEWLEYLDEL 166 (167)
T ss_dssp TT--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS--TTS-SEEE---GHHHHHHHHHHHHH
T ss_pred CCCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccCCCc-ceecCCCCHHHHHHHHHHHhh
Confidence 6899999997653111 112223445556666655433111 23466666555 67776554
No 85
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.64 E-value=0.0026 Score=63.57 Aligned_cols=162 Identities=20% Similarity=0.133 Sum_probs=123.0
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
..+++.++++......|++.+.++|=+...++++.+.+. -+.+++..-.|.+|..|+-|-+.. |.=+...|||||.
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~a-Gar~~TaTSg~Gl 82 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYA-GARAFTATSGQGL 82 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhh-CcceEeecCCccH
Confidence 357899999999999999999999999988888877642 369999999999999999886554 6445677999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC-CcchHHHHHHHHHHHhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN-NLGDAHELIDTAISTAL 180 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~-~~~~~~~~i~~A~~~A~ 180 (431)
+=+..++.-|...++|+++...+++-...+.- +.+ +..|...+.. +-|...+. +.+++-....+||+.|.
T Consensus 83 ~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p-----~~~--dq~D~~~~r~--~g~~~~~~~s~qEa~d~t~~Af~iAe 153 (365)
T COG0674 83 LLMAEALGLAAGTETPLVIVVAQRPLPSTGLP-----IKG--DQSDLMAARD--TGFPILVSASVQEAFDLTLLAFNIAE 153 (365)
T ss_pred HHHHHHHHHHHhccCCeEEEEeccCcCCCccc-----ccc--cHHHHHHHHc--cCceEEeeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876533220 222 2234332222 23332222 57778888889999998
Q ss_pred hCCCcEEEEEccCCCC
Q 014091 181 KESKPVYISISCNLPG 196 (431)
Q Consensus 181 ~~~GPv~l~iP~dv~~ 196 (431)
..+-||.+..-.-+..
T Consensus 154 ~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 154 KVLTPVIVLLDGFLAS 169 (365)
T ss_pred HhcCCEEEeeccchhc
Confidence 8788998887655544
No 86
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.31 E-value=0.0071 Score=69.08 Aligned_cols=156 Identities=14% Similarity=0.054 Sum_probs=109.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhh---hcC--CC-----ceEEecCchhHHHHhhhhhhhhcCccEEEE
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL---IAE--PE-----LNLVGCCNELNAGYAADGYARSRGVGACVV 95 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al---~~~--~~-----i~~v~~~hE~~A~~~A~gyar~tg~gv~~~ 95 (431)
.|++.++++..... +++.+|++|=+...++.+.+ ... .+ .++|..-+|.+|+.|+.|.+ .+|.=+...
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~-~aGara~T~ 80 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGAL-QTGALTTTF 80 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHh-hcCCCEEEe
Confidence 47899999998877 99999999955555555555 321 11 27999999999999999955 457435677
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHH
Q 014091 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDT 174 (431)
Q Consensus 96 t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~ 174 (431)
|||+|.+=+..+|..+...++|+++...++.-...+-. .+ .++.|...+ |. +.|. ....+++++-...-.
T Consensus 81 TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~-----i~--~dh~Dv~~~-R~-~G~ivl~s~svQEa~D~al~ 151 (1165)
T TIGR02176 81 TASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALS-----IF--GDHQDVMAA-RQ-TGFAMLASSSVQEVMDLALV 151 (1165)
T ss_pred cChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCc-----cC--CCchHHHHh-hc-CCeEEEeCCCHHHHHHHHHH
Confidence 99999999999998777779999999998754422111 12 233453222 33 3343 233456667777778
Q ss_pred HHHHhhhCCCcEEEEEcc
Q 014091 175 AISTALKESKPVYISISC 192 (431)
Q Consensus 175 A~~~A~~~~GPv~l~iP~ 192 (431)
|++.|...+-||.+....
T Consensus 152 A~~lAe~~~~Pvi~~~Dg 169 (1165)
T TIGR02176 152 AHLATIEARVPFMHFFDG 169 (1165)
T ss_pred HHHHHHhcCCCEEEEecC
Confidence 888888777888776654
No 87
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.04 E-value=0.13 Score=58.43 Aligned_cols=163 Identities=16% Similarity=-0.013 Sum_probs=115.7
Q ss_pred CCCcccHHHHHHHHHHH-------cCC---CEEEecCCCchHHHHHhhhcCC------CceEEecCchhHHHHhhhhhh-
Q 014091 23 GASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGYA- 85 (431)
Q Consensus 23 ~~~~~~~a~~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~~~------~i~~v~~~hE~~A~~~A~gya- 85 (431)
|..-+++-|+|++.+.+ .|+ .+|-|+||+....+.+.|.+.. +|.+-...||..|+-+|.|-+
T Consensus 16 g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~ 95 (1159)
T PRK13030 16 GRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQ 95 (1159)
T ss_pred CCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcc
Confidence 45678999999999999 999 9999999999999999997643 399999999999999999977
Q ss_pred -------hhcCccEEEEeCCcchHHHHHHHHHhhhcCC----cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhh
Q 014091 86 -------RSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (431)
Q Consensus 86 -------r~tg~gv~~~t~GpG~~n~~~gl~~A~~~~~----Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (431)
+..|.-.+..--+||+==+.=.+..+-..++ -||+|+|+=+.....+ +.+ |-...+..
T Consensus 96 ~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq---------~eq--dSr~~~~~ 164 (1159)
T PRK13030 96 VEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSS---------MPH--QSDFALIA 164 (1159)
T ss_pred ccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCc---------CHH--HHHHHHHH
Confidence 3445222334467885445556654444444 7999999865442211 111 22222333
Q ss_pred heeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 155 ITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 155 ~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
.---.....+++++-+....||.++....-||-+-.=.++..
T Consensus 165 a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h 206 (1159)
T PRK13030 165 WHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVE 206 (1159)
T ss_pred cCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee
Confidence 333455667788888899999999887777887776666543
No 88
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.77 E-value=0.0053 Score=59.41 Aligned_cols=107 Identities=27% Similarity=0.363 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee-----e-cCCCCC
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT-----Y-WGAVSS 293 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~-----~-~G~~~~ 293 (431)
..+++++++++.|.+||||+++-+... .-++.+.-.+|+|++|+-+ |.+-..+.|. . .|.. .
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s~t-scEA~~~gielaE~~gavi----------D~~asvchGp~~~alqe~g~p-~ 131 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLGAVI----------DSNASVCHGPSVLALQEAGKP-T 131 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccccc-hHHHHHHHHHHHHHhCcEe----------cCCCccccchHHHHHHhcCCc-c
Confidence 357899999999999999999966544 4578889999999999754 3333333332 1 1111 1
Q ss_pred HHHHHHhhhCCEEEEeCCccCccccc---ccccCC---------CCcceEEEccCce
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSV---GYSLLI---------KKEKAIIVQPHRV 338 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~---~~~~~~---------~~~~~I~Id~d~~ 338 (431)
....+.=..+|+|+-.|+...+.... .|+.|. .+.++|.||..+.
T Consensus 132 ~TlgevKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT 188 (429)
T COG1029 132 ATLGEVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKT 188 (429)
T ss_pred cchhhhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcC
Confidence 12223345799999999875433221 222221 2457898887654
No 89
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=95.96 E-value=0.15 Score=53.45 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC----CceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcch
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP----ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~----~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (431)
+-+-++|++.+-+.||.++-|+||+....|.+.|.+.. ++.+=...||..|.-+|.| |...| .+++.. -+||.
T Consensus 16 llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~m-KhVGl 93 (640)
T COG4231 16 LLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTM-KHVGL 93 (640)
T ss_pred hccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEe-ccccc
Confidence 56778999999999999999999999999999998743 4777789999999999999 66677 666554 37774
Q ss_pred HHHHHHHHHhhh--cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHh
Q 014091 102 LSVLNAIAGAYS--ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 102 ~n~~~gl~~A~~--~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A 179 (431)
-=+.=.+.++.. -+=-+|+|+|+-+.-...+ . + +|-...++..--+.....++..+-+.+..||.++
T Consensus 94 NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSq--------n--e-qdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelS 162 (640)
T COG4231 94 NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQ--------N--E-QDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELS 162 (640)
T ss_pred ccchhhhhhhhhcCccccEEEEEccCCCccccc--------c--h-hHhHHHHHhcCceeecCCChHHHHHHHHHHHHHH
Confidence 323333333333 2346888998865442211 1 1 2334444555567778888999999999999999
Q ss_pred hhCCCcEEEEEccCCCC
Q 014091 180 LKESKPVYISISCNLPG 196 (431)
Q Consensus 180 ~~~~GPv~l~iP~dv~~ 196 (431)
....-||-|-.-.++-.
T Consensus 163 e~~~~pVilr~ttr~~h 179 (640)
T COG4231 163 EKSGLPVILRTTTRVSH 179 (640)
T ss_pred HHhCCCEEEEEEeeeec
Confidence 88778888877766643
No 90
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.85 E-value=0.18 Score=57.27 Aligned_cols=164 Identities=17% Similarity=0.011 Sum_probs=113.6
Q ss_pred CCCCcccHHHHHHHHHHH-------cCC---CEEEecCCCchHHHHHhhhcCC------CceEEecCchhHHHHhhhhh-
Q 014091 22 GGASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAADGY- 84 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~~~------~i~~v~~~hE~~A~~~A~gy- 84 (431)
.|..-+++-|+|++.+.+ .|+ .+|-|+||+....+.+.|.+.. +|.+-...||..|+-++-|-
T Consensus 23 ~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ 102 (1165)
T PRK09193 23 RGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQ 102 (1165)
T ss_pred cCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhc
Confidence 456678999999999988 999 9999999999999999997643 49999999999999999654
Q ss_pred -------hhhcCccEEEEeCCcchHHHHHHHHHhhhcC----CcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh
Q 014091 85 -------ARSRGVGACVVTFTVGGLSVLNAIAGAYSEN----LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (431)
Q Consensus 85 -------ar~tg~gv~~~t~GpG~~n~~~gl~~A~~~~----~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (431)
++..|.-.+..--|||.==+.=.+..+-..+ =-||+|+|+=+.....+. .+ |-...+.
T Consensus 103 ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~---------eq--dSr~~~~ 171 (1165)
T PRK09193 103 QVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTL---------PH--QSEHAFK 171 (1165)
T ss_pred ccccccceeeccceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccc---------hh--hhHHHHH
Confidence 3445632333447888654555555444444 479999998654422211 11 2122222
Q ss_pred hheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 154 ~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
..---.....+++++-+....||.++....-||-+-.=.++..
T Consensus 172 ~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h 214 (1165)
T PRK09193 172 AAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVE 214 (1165)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee
Confidence 2233445566777888888889998887777887777666543
No 91
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=95.40 E-value=0.045 Score=55.65 Aligned_cols=114 Identities=26% Similarity=0.305 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
-+++++.++++|+++++|+++ |.+.........+.+|++.+|..+ .+.......+..+.+..+ |.... ...+..
T Consensus 56 WdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~---g~~~~-~~~di~ 129 (415)
T cd02761 56 LEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAII-DHAASVCHGPNLLALQDS---GWPTT-TLGEVK 129 (415)
T ss_pred cHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCc-cccccccccchHHHHHhC---CCccc-cHHHHH
Confidence 578899999999999999887 444444345677889999999743 222222222222221111 11111 223443
Q ss_pred hhCCEEEEeCCccCccccccc-c--c----C-----CCCcceEEEccCceee
Q 014091 301 ESADAYVFVGPIFNDYSSVGY-S--L----L-----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~-~--~----~-----~~~~~~I~Id~d~~~~ 340 (431)
+++|+||++|+.+.+.....+ . . + .++.|+|.||+.....
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 579999999988765432211 1 0 0 2456899999876544
No 92
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=94.90 E-value=0.57 Score=42.53 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=71.8
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---c-eeeeecC-CCChHHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---R-ILHHTIG-LPDFTQE 148 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~-~~~~~~~-~~~~~d~ 148 (431)
+.-+|-|.+.... +.+|++ |=|.. -.+..|..|...++|+++|.-.......-+. . .-++..+ .....|+
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~--GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~ 135 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIA--GDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESF 135 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEE--cchHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCH
Confidence 4445666655543 444443 55544 3568899999999999999954332211000 0 0000000 0112467
Q ss_pred HHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..+.+.+-....++++++++.+.+++|+..+ ...||+.|++..|-
T Consensus 136 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~~~~p~liev~v~~ 180 (196)
T cd02013 136 AKIAEACGAKGITVDKPEDVGPALQKAIAMM-AEGKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEEEEeCc
Confidence 8889998888889999988888888877542 24799999999763
No 93
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=94.79 E-value=0.077 Score=46.05 Aligned_cols=108 Identities=20% Similarity=0.132 Sum_probs=67.2
Q ss_pred hHHHHhhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCC---------
Q 014091 75 LNAGYAADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL--------- 142 (431)
Q Consensus 75 ~~A~~~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~--------- 142 (431)
..+.-+|.|.+... + +.+|++ |=|.. ..++.|..|...++|+++|.-.......-+. .++..+.
T Consensus 31 G~~~~~aiGa~~a~p~~~vv~i~--GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~--~~~~~~~~~~~~~~~~ 106 (153)
T PF02775_consen 31 GYALPAAIGAALARPDRPVVAIT--GDGSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGG--QQTPFGGGRFSGVDGK 106 (153)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEE--EHHHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHH--HHHHTTSTCHHSTBTT
T ss_pred CCHHHhhhHHHhhcCcceeEEec--CCcceeeccchhHHHhhccceEEEEEEeCCcceEecc--ccccCcCccccccccc
Confidence 34556667777764 3 444443 44433 4589999999999999999976533211100 0000000
Q ss_pred -CChHHHHHHHhhheeeEEEcCCc--chHHHHHHHHHHHhhhCCCcEEEEE
Q 014091 143 -PDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISI 190 (431)
Q Consensus 143 -~~~~d~~~~~~~~~k~~~~v~~~--~~~~~~i~~A~~~A~~~~GPv~l~i 190 (431)
....|...+.+.+--...+++++ +++.+.+++|+ ..+||+.|+|
T Consensus 107 ~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 107 TFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp TSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred ccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 11247788888886668888887 66655555554 7789999986
No 94
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.39 E-value=2.5 Score=36.79 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=70.9
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCCceeeeecCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~ 143 (431)
|++. ...|++.+.+|.|.|.. | ..++. +...=..-+...|. ++-..+.||+++.....-.. +.+..-|+
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~-~~~G~tH~----- 111 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GLKPFVS-TFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISV-GEDGPTHQ----- 111 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CCeEEEE-ECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEec-CCCCcccc-----
Confidence 4444 78999999999999964 6 44444 44322335666666 67778999999987543322 12222232
Q ss_pred ChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 144 DFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
..+...+++.+-... ....+++++... ++.|...++|+||-+|.
T Consensus 112 -~~~~~a~~~~iPg~~v~~Ps~~~~~~~l----l~~a~~~~~P~~irl~~ 156 (156)
T cd07033 112 -GIEDIALLRAIPNMTVLRPADANETAAA----LEAALEYDGPVYIRLPR 156 (156)
T ss_pred -hHHHHHHhcCCCCCEEEecCCHHHHHHH----HHHHHhCCCCEEEEeeC
Confidence 335678888876544 344555555555 44455556899999874
No 95
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.13 E-value=0.66 Score=42.30 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=71.0
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC-------c----eeeeecC----
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN-------R----ILHHTIG---- 141 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~-------~----~~~~~~~---- 141 (431)
+|-|-+.... +.||+ .|=|... .+..|..|...++|+++|+-.......-+. . .-+....
T Consensus 65 aaiGa~la~p~~~vv~i--~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd02006 65 AALGVAAADPDRQVVAL--SGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSEL 142 (202)
T ss_pred HHHhHHhhCCCCeEEEE--EeChHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccccc
Confidence 4444444432 34444 3555553 347889999999999999876543211000 0 0000000
Q ss_pred CCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 142 LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 142 ~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.....|...+.+.+--...++++++++.+.+++|+.......+|+.|+|..|-
T Consensus 143 ~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 143 GGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred CCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 00014778889988888999999999988888888765445799999998764
No 96
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=94.12 E-value=0.4 Score=47.56 Aligned_cols=111 Identities=16% Similarity=0.013 Sum_probs=70.3
Q ss_pred HHHhhhhhhhhcCccEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh
Q 014091 77 AGYAADGYARSRGVGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (431)
Q Consensus 77 A~~~A~gyar~tg~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (431)
|..+|-|..+...-.++++..|=|+.+. .-+|..|...++|+|+|+-......... .+.... ..|.....+
T Consensus 131 AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~---~~~~~~---~~d~~~~a~ 204 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVP---RSKQTA---APTLAQKAI 204 (341)
T ss_pred HHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccc---hhhhhC---CcCHHHHHh
Confidence 3444443333222456777788888862 3557778899999999987653211100 000111 135567777
Q ss_pred hheeeEEEcCCcch--HHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 154 AITCSQAVVNNLGD--AHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 154 ~~~k~~~~v~~~~~--~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+--...+|+..+. +.+.+.+|++.|...+||+.|++-..
T Consensus 205 a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~ 246 (341)
T TIGR03181 205 AYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTY 246 (341)
T ss_pred hCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEee
Confidence 77666777776654 46778889999988889999999644
No 97
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.01 E-value=0.46 Score=42.02 Aligned_cols=109 Identities=20% Similarity=0.126 Sum_probs=65.7
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeee-------cC-CCCh
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT-------IG-LPDF 145 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~-------~~-~~~~ 145 (431)
+.-+|-|.+.... +.+|+ .|=|... ....+..|...++|+++|.-.......-+. .++. .. ....
T Consensus 53 ~lp~AiGa~la~~~~~vv~i--~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~--~~~~~~~~~~~~~~~~~~ 128 (172)
T cd02004 53 GLGYAIAAALARPDKRVVLV--EGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLD--GQQLSYGLGLPVTTLLPD 128 (172)
T ss_pred hHHHHHHHHHhCCCCeEEEE--EcchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchh--hhhhhccCCCceeccCCC
Confidence 3445555555443 44444 4666665 468899999999999888865432111100 0000 00 0012
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.|...+++.+--...++++++++ ++|++.+...+||+.|++..|
T Consensus 129 ~d~~~la~a~G~~~~~v~~~~el----~~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 129 TRYDLVAEAFGGKGELVTTPEEL----KPALKRALASGKPALINVIID 172 (172)
T ss_pred CCHHHHHHHCCCeEEEECCHHHH----HHHHHHHHHcCCCEEEEEEcC
Confidence 36778888887778888886665 455555555689999998754
No 98
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=93.73 E-value=0.11 Score=52.40 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecC--------CCCCHH
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWG--------AVSSSF 295 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G--------~~~~~~ 295 (431)
..++++++|..|+|.+|+-|+|..-+.++.+++||+|++.-.=+.--.+-.-+-.+-|=++-++.. ...-++
T Consensus 295 ~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMde 374 (462)
T PRK09444 295 TAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDE 374 (462)
T ss_pred CHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCCCHHHHHhHHh
Confidence 456788999999999999999999888998899988887632111111111111122222322211 122235
Q ss_pred HHHHhhhCCEEEEeCCcc
Q 014091 296 CGEIVESADAYVFVGPIF 313 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~ 313 (431)
.|.-+.+.|++|++|+.-
T Consensus 375 IN~~F~~tDvalVIGAND 392 (462)
T PRK09444 375 INDDFADTDTVLVIGAND 392 (462)
T ss_pred hccccccCCEEEEecCcc
Confidence 666677999999999653
No 99
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=93.72 E-value=0.26 Score=48.89 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=73.4
Q ss_pred HHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 232 L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
|.+|+ .|+-.|.|+...+..+.+++||+.+|.-|-.|-. -.|.+|.+ ..+|. .|.. =..|+-|.+
T Consensus 234 L~~A~-vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~--~QIGq-TGk~---------V~P~lYIA~ 300 (356)
T PLN00022 234 LGSAK-VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPND--LQVGQ-TGKI---------VAPELYIAV 300 (356)
T ss_pred cccCC-EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChH--heecc-CCCC---------cCCcEEEEE
Confidence 45554 4555667777667889999999999999988754 34677644 44654 3321 267999999
Q ss_pred CCccCcccccccccCCCCcceEEEccCcee--ecCCCcccc-ccHHHHHHHHHHHhcc
Q 014091 310 GPIFNDYSSVGYSLLIKKEKAIIVQPHRVT--VGNGPSLGW-VFMADFLSALAKKLRK 364 (431)
Q Consensus 310 G~~~~~~~~~~~~~~~~~~~~I~Id~d~~~--~~~~~~~~~-~d~~~~L~~L~~~l~~ 364 (431)
|-+=...-..+. .....+|-||-|+.. +. ...|.- .|+.++|.+|++.++.
T Consensus 301 GISGAiQH~~Gm---~~s~~IVAIN~D~~APIF~-~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 301 GISGAIQHLAGM---KDSKVIVAINKDADAPIFQ-VADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred ecchHHHHHhhc---ccCCEEEEECCCCCCCchh-hcCeeEeeeHHHHHHHHHHHHHh
Confidence 955321111111 124458888888752 11 112222 3899999999998874
No 100
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.52 E-value=2.9 Score=37.41 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=57.7
Q ss_pred CCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeee---cCCCChHHHHHHHhhhe----eeEEEcCCcchH
Q 014091 97 FTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT---IGLPDFTQELRCFQAIT----CSQAVVNNLGDA 168 (431)
Q Consensus 97 ~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~----k~~~~v~~~~~~ 168 (431)
.|=|... .++.+..|...++|+++|.-....-...+ ..|.. .......|...+.+.+- -+..++.+++++
T Consensus 75 ~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~--~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el 152 (183)
T cd02005 75 VGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIER--AIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGEL 152 (183)
T ss_pred ECCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEE--EeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHH
Confidence 4655553 45678899999999999987654322111 00000 00011136677788775 456788888777
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 169 HELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 169 ~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+.+++|++ ..+||+.|++..|
T Consensus 153 ~~al~~a~~---~~~~p~liev~~~ 174 (183)
T cd02005 153 DEALKDALF---NRDKLSLIEVILP 174 (183)
T ss_pred HHHHHHHHh---cCCCcEEEEEEcC
Confidence 666666654 2579999999876
No 101
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=93.49 E-value=0.34 Score=47.05 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=72.8
Q ss_pred HHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 232 L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
|.+|+ .++-.|.|..+.+..+.+.+||+.+|+-|-.|-. -.|.+|.+| .+|. .|. .=..||-|++
T Consensus 192 L~~A~-iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGq-TGk---------~V~P~LYIA~ 258 (313)
T COG2025 192 LAEAK-IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQ-TGK---------TVAPKLYIAL 258 (313)
T ss_pred cccce-EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecC-CCc---------EecccEEEEE
Confidence 34554 2555677777777788899999999999988754 267888764 4664 332 1267999999
Q ss_pred CCccC-cccccccccCCCCcceEEEccCceeec-CCCcccc-ccHHHHHHHHHHHhcc
Q 014091 310 GPIFN-DYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (431)
Q Consensus 310 G~~~~-~~~~~~~~~~~~~~~~I~Id~d~~~~~-~~~~~~~-~d~~~~L~~L~~~l~~ 364 (431)
|-+=- .... +. .....+|-||-|+..-= +...|.- .|+-+++.+|.+.|+.
T Consensus 259 GISGAiQHla-Gm---~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 259 GISGAIQHLA-GM---KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred ecccHHHHHh-hc---ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 94321 1111 11 12456788888865210 0111221 2899999999998764
No 102
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=93.07 E-value=0.34 Score=44.36 Aligned_cols=144 Identities=11% Similarity=-0.021 Sum_probs=79.5
Q ss_pred EEecCCCchHHHHHhhhcCCCceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcE
Q 014091 45 VFSVPGDFNLTLLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPV 118 (431)
Q Consensus 45 vFgvpG~~~~~l~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pv 118 (431)
++.=.|.+...+...+.-...-+++.... =..+.-+|-|.+.... +.+|+ .|=|... ....|..|...++|+
T Consensus 18 vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i--~GDGsf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 18 VINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVL--VGDGSYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEE--EccchhhccHHHHHHHHHcCCCC
Confidence 34334555444444443222345554321 1122234445444432 34444 4555553 356788899999999
Q ss_pred EEEeCCCCCcccCC-------CceeeeecC-----------CCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 119 ICIVGGPNSNDYGT-------NRILHHTIG-----------LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 119 l~I~g~~~~~~~~~-------~~~~~~~~~-----------~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
++|.-.......-+ .......+. .....|...+.+.+--...++++++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 99987654321100 000000000 00124778888888777888988887766666664
Q ss_pred hCCCcEEEEEccCC
Q 014091 181 KESKPVYISISCNL 194 (431)
Q Consensus 181 ~~~GPv~l~iP~dv 194 (431)
..+||+.|++..|-
T Consensus 172 ~~~gp~lIeV~v~~ 185 (205)
T cd02003 172 ASDRTTVIVIKTDP 185 (205)
T ss_pred hCCCCEEEEEEeec
Confidence 55899999998764
No 103
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=92.89 E-value=2.9 Score=47.81 Aligned_cols=164 Identities=15% Similarity=-0.036 Sum_probs=111.2
Q ss_pred CCCCcccHHHHHHHHH-------HHcCCC---EEEecCCCchHHHHHhhhcC------CCceEEecCchhHHHHhhhhhh
Q 014091 22 GGASVGTLGRHLARRL-------VEIGAK---DVFSVPGDFNLTLLDHLIAE------PELNLVGCCNELNAGYAADGYA 85 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L-------~~~GV~---~vFgvpG~~~~~l~~al~~~------~~i~~v~~~hE~~A~~~A~gya 85 (431)
.|..-+++-|+|++.+ .+.|++ +|-|+||+....+.+.|.+. .+|.+-...||..|+-|..|-.
T Consensus 26 ~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq 105 (1186)
T PRK13029 26 RGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQ 105 (1186)
T ss_pred cCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhh
Confidence 3566799999999999 999999 99999999999999988653 2499999999999999888866
Q ss_pred hh--------cCccEEEEeCCcchHHHHHHHHHhh---h-cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh
Q 014091 86 RS--------RGVGACVVTFTVGGLSVLNAIAGAY---S-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (431)
Q Consensus 86 r~--------tg~gv~~~t~GpG~~n~~~gl~~A~---~-~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (431)
++ .|.=.+..--|||+==+.=.+..+- . -+=-||+|+|+=+.....+. .+ |-...+.
T Consensus 106 ~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~---------eq--dSr~~~~ 174 (1186)
T PRK13029 106 QLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSV---------AH--QSDHTFI 174 (1186)
T ss_pred hcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccC---------HH--HHHHHHH
Confidence 53 3321233346788533333333222 1 23468999998654422211 11 2122233
Q ss_pred hheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 154 ~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
..---.....+++++-+....||.++....-||-+-.=.++..
T Consensus 175 ~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~ 217 (1186)
T PRK13029 175 AWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVE 217 (1186)
T ss_pred HcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeee
Confidence 3333445566777788888889988877777888887777754
No 104
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=92.86 E-value=2.1 Score=37.58 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=67.6
Q ss_pred EEe-cCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhc-CCcEEEEeCC-CCCcccCCCceeeeecCCCC
Q 014091 68 LVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSE-NLPVICIVGG-PNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 68 ~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl~~A~~~-~~Pvl~I~g~-~~~~~~~~~~~~~~~~~~~~ 144 (431)
++. -..|++.+.+|.|++......++ .+..+-..-+...+..+-.. ++|+|+.... ... +.+...||
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~-~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~---g~~G~tH~------ 120 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVV-AIFFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGV---GEDGPTHH------ 120 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEE-EeeHHHHHHHHHHHHHhCcccCCCEEEEecCcccc---CCCCcccc------
Confidence 554 78999999999999998553333 33444444444444444344 4776665522 221 22111232
Q ss_pred hHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
..+...+++.+-... ....+++++...++.|++ ...||+||-++.
T Consensus 121 ~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~~~ 166 (168)
T smart00861 121 SQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRLER 166 (168)
T ss_pred chhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEecC
Confidence 345678888876433 556677777777777762 235899999875
No 105
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.84 E-value=4.5 Score=35.24 Aligned_cols=103 Identities=13% Similarity=-0.046 Sum_probs=62.6
Q ss_pred hhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhc-CCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhe
Q 014091 80 AADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSE-NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156 (431)
Q Consensus 80 ~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~-~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (431)
+|-|.+.... +.+| ..|=|... .+..+..+... +.|+++|.-+......-.. ++... ...|...+.+.+-
T Consensus 50 ~AiGa~~a~~~~Vv~--i~GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~---~~~~~--~~~d~~~lA~a~G 122 (157)
T cd02001 50 IGLGLALGLSRKVIV--VDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYGSTGG---QPTPS--SNVNLEAWAAACG 122 (157)
T ss_pred HHHHHHhcCCCcEEE--EECchHHHhcccHHHHHHHhcCCCEEEEEEeCccccccCC---cCCCC--CCCCHHHHHHHCC
Confidence 4444444333 3333 34777664 45667777776 5999999966543221111 11111 1246778888887
Q ss_pred eeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 157 CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 157 k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
-...++++++++.+.+++|+ ...||+.|++..+
T Consensus 123 ~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 123 YLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred CceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 77788888777766665555 4579999998764
No 106
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=92.65 E-value=0.46 Score=46.35 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCC--c-ccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEE
Q 014091 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG--K-GLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (431)
Q Consensus 232 L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g--k-g~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~ 308 (431)
|.+|+ .|+-.|+|....+..+.+++||+.+|.-|-.|-.. . |.+|. ...+|. .|.. =..|+-|.
T Consensus 192 L~~A~-vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGq-TGk~---------V~P~lYiA 258 (313)
T PRK03363 192 LDKAR-LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGI-SNLM---------LKPELYLA 258 (313)
T ss_pred cccCC-EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecC-CCCC---------cCccEEEE
Confidence 45554 45556777777778899999999999999988642 2 47774 455665 3421 15799999
Q ss_pred eCCccCcccccccccCCCCcceEEEccCcee--ecCCCcccc-ccHHHHHHHHHHHhc
Q 014091 309 VGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT--VGNGPSLGW-VFMADFLSALAKKLR 363 (431)
Q Consensus 309 lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~--~~~~~~~~~-~d~~~~L~~L~~~l~ 363 (431)
+|-+=..--..+. .....+|-||.|+.. +. ...|.. .|+.++|.+|.+.++
T Consensus 259 ~GISGaiQH~~Gm---~~s~~IVAIN~Dp~APIF~-~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 259 VGISGQIQHMVGA---NASQTIFAINKDKNAPIFQ-YADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred EccccHHHHHhhc---ccCCEEEEEcCCCCCCchh-hCCeeEeeeHHHHHHHHHHHhh
Confidence 9955321111121 124568889888762 11 111222 389999999998764
No 107
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.48 E-value=1.4 Score=39.32 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=64.8
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeeeecC-CCChHHHHHHH
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIG-LPDFTQELRCF 152 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~~~~-~~~~~d~~~~~ 152 (431)
+|-|.+.... +.+|++ |=|... ....|..|...++|+++|.-.......-+. ....+..+ +..-.|...+.
T Consensus 56 ~aiGa~la~~~~~vv~i~--GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a 133 (177)
T cd02010 56 GAIGAKLVYPDRKVVAVS--GDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYA 133 (177)
T ss_pred HHHHHHHhCCCCcEEEEE--cchHHHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHH
Confidence 3444444443 344443 555553 346788899999999999765432211000 00000011 00113677888
Q ss_pred hhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+.-...++++++++.+.+++|+ ..+||+.|+++.|-
T Consensus 134 ~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 134 ESFGAKGYRIESADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 888777789988888766666664 45799999999763
No 108
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.43 E-value=4.6 Score=35.80 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=71.9
Q ss_pred ceEEecCchh---HHHHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee---
Q 014091 66 LNLVGCCNEL---NAGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH--- 137 (431)
Q Consensus 66 i~~v~~~hE~---~A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~--- 137 (431)
-+++..+.=. .+.-+|-|.+.... +.+|++ |=|... .+..|..|...++|++++.-.......-+. ..|
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~--GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~-~~~~~~ 118 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLT--GDLSFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSL-LPQASF 118 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEE--ehHHHHHhHHHHHhccccCCCeEEEEEECCCCchhee-ccCCcc
Confidence 4555443311 24445556555444 555543 555553 368999999999999999876543211000 000
Q ss_pred -----eecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 138 -----HTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 138 -----~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.........|...+.+.+--...++++++++.+.+++|+ ...+|+.|++..|
T Consensus 119 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIev~v~ 175 (175)
T cd02009 119 EDEFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESAL----AQDGPHVIEVKTD 175 (175)
T ss_pred cchhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence 000000013677888888766788888888777666665 4579999999764
No 109
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.40 E-value=1.2 Score=39.89 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=66.2
Q ss_pred HhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCChHH
Q 014091 79 YAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFTQ 147 (431)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~~d 147 (431)
-+|-|.+.... +.+|+ .|=|.. -.+..|..|...++|++++.-.......- .+........ ...|
T Consensus 57 p~aiGa~la~~~~~vv~i--~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~--~~~d 132 (186)
T cd02015 57 PAAIGAKVARPDKTVICI--DGDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLD--SNPD 132 (186)
T ss_pred HHHHHHHHhCCCCeEEEE--EcccHHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCC--CCCC
Confidence 34445444432 33443 455554 45678889999999999998765432110 0000000000 1136
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...+.+.+.-...++++++++.+.+++| ....||+.|++..|-
T Consensus 133 ~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~~~p~liev~~~~ 175 (186)
T cd02015 133 FVKLAEAYGIKGLRVEKPEELEAALKEA----LASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHHCCCceEEeCCHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence 7888888888888999877765555555 446799999999874
No 110
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.37 E-value=2 Score=38.31 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=58.4
Q ss_pred CCcchHHH--HHHHHHhhhcCCcEEEEeCCCCCcccCCCceee---ee-cCCCChHHHHHHHhhheeeEEEcCCcchHHH
Q 014091 97 FTVGGLSV--LNAIAGAYSENLPVICIVGGPNSNDYGTNRILH---HT-IGLPDFTQELRCFQAITCSQAVVNNLGDAHE 170 (431)
Q Consensus 97 ~GpG~~n~--~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~---~~-~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~ 170 (431)
.|=|.... +..|..|...++|+++|.-+......-...... .. .......|...+++.+--...++.+++++.+
T Consensus 76 ~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~ 155 (178)
T cd02008 76 IGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKA 155 (178)
T ss_pred ecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHH
Confidence 46666532 578999999999999998775432111100000 00 0000124778888888777788888888863
Q ss_pred HHHHHHHHhhhCCCcEEEEE
Q 014091 171 LIDTAISTALKESKPVYISI 190 (431)
Q Consensus 171 ~i~~A~~~A~~~~GPv~l~i 190 (431)
+.+|++.|...+||..|++
T Consensus 156 -~~~al~~a~~~~gp~lI~v 174 (178)
T cd02008 156 -IREELKEALAVPGVSVIIA 174 (178)
T ss_pred -HHHHHHHHHhCCCCEEEEE
Confidence 3455666656689998876
No 111
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=91.99 E-value=0.88 Score=44.11 Aligned_cols=101 Identities=19% Similarity=0.066 Sum_probs=67.0
Q ss_pred ccEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCC--
Q 014091 90 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN-- 164 (431)
Q Consensus 90 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~-- 164 (431)
-.++++..|=|+++. .-++..|...++|+|+|.-..... .... .+.... ..|...+.+.+--...+++.
T Consensus 126 ~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~--~~~~~~---~~~~~~~a~a~G~~~~~Vdg~d 199 (293)
T cd02000 126 DRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTP--TSRQTA---GTSIADRAAAYGIPGIRVDGND 199 (293)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCC--HHHHhC---CccHHHHHHhCCCCEEEECCCC
Confidence 356777778888853 356888999999999999764321 1110 000111 12455666666556667753
Q ss_pred cchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 165 LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
++++.+.+++|++.+....||+.|++-.+-..
T Consensus 200 ~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 200 VLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 56788888899988888889999999765533
No 112
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=91.50 E-value=0.086 Score=53.71 Aligned_cols=86 Identities=24% Similarity=0.219 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC---CCeEecCC-CcccCCCCCCCcceee--------cCCC
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHFIGTY--------WGAV 291 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~---~Pv~tt~~-gkg~~~~~hp~~~G~~--------~G~~ 291 (431)
..++++++|..|||.+|+-|+|..-+.++.++++|++.+. .-|---.. -.|-.| =++-++ .=..
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP----GHMNVLLAEa~VpYd~~~ 371 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMP----GHMNVLLAEANVPYDIVK 371 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSST----THHHHHHHHCT--GGGEE
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC----CcceEEEEecCCCHHHHh
Confidence 3568889999999999999999988888888888887764 22211110 111122 111111 1112
Q ss_pred CCHHHHHHhhhCCEEEEeCCcc
Q 014091 292 SSSFCGEIVESADAYVFVGPIF 313 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~ 313 (431)
.-++.|.-+.+.|++|++|+.-
T Consensus 372 emdeiN~~f~~~Dv~lViGAND 393 (463)
T PF02233_consen 372 EMDEINPDFPDTDVVLVIGAND 393 (463)
T ss_dssp EHHHHGGGGGG-SEEEEES-SG
T ss_pred hhhhcccchhcCCEEEEecccc
Confidence 2246777788999999999653
No 113
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=91.39 E-value=0.76 Score=44.85 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=73.3
Q ss_pred HHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC---CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEE
Q 014091 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS---GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (431)
Q Consensus 232 L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~---gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~ 308 (431)
|.+|+ .|+-.|.|....+..+.+++||+.+|.-|-.|-. ..|.+|.+ ..+|. .|.. =..|+.|.
T Consensus 191 L~~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGq-TGk~---------V~P~lYiA 257 (312)
T PRK11916 191 LSKAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGV-SGVL---------LKSDLYLT 257 (312)
T ss_pred cccCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECC-CCCC---------cCccEEEE
Confidence 45554 3555677777667789999999999999988864 23577754 44554 3321 15799999
Q ss_pred eCCccCcccccccccCCCCcceEEEccCceee--cCCCcccc-ccHHHHHHHHHHHhc
Q 014091 309 VGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV--GNGPSLGW-VFMADFLSALAKKLR 363 (431)
Q Consensus 309 lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~--~~~~~~~~-~d~~~~L~~L~~~l~ 363 (431)
+|-+=...-..+. .....+|-||.|+..- . ...|.. .|+.++|.+|.+.++
T Consensus 258 ~GISGAiQH~aGm---~~s~~IVAIN~Dp~APIF~-~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 258 LGISGQIQHMVGG---NGAKVIVAINKDKNAPIFN-YADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred eccccHHHHHhhc---ccCCEEEEECCCCCCCchh-hCCeeEeeeHHHHHHHHHHHhh
Confidence 9955321111122 1345689999888621 1 111222 389999999998764
No 114
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=91.09 E-value=0.72 Score=46.36 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
-+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+..............+ .|. +..+. . ..
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~-~~ 144 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRL-RGN--YLFNT-S-IA 144 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCcccccc-ccC--cccCC-C-HH
Confidence 5788999999999876 56666665443 2344678899999998765432111100100000 011 11111 1 23
Q ss_pred HhhhCCEEEEeCCccCccccccccc----CC-CCcceEEEccCce
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSL----LI-KKEKAIIVQPHRV 338 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~----~~-~~~~~I~Id~d~~ 338 (431)
-++++|+||++|+.+.+.....+.. .. .+.++|.||+...
T Consensus 145 di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t 189 (386)
T cd02768 145 EIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDT 189 (386)
T ss_pred HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 3579999999998875433221111 11 2779999998764
No 115
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.07 E-value=0.24 Score=53.43 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcC---------------CC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCC---CC
Q 014091 221 LEAAVEATADFLNKAV---------------KP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE---HH 280 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~---------------rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~---~h 280 (431)
-+++++.+++.|++.+ .| +.+.|++....+..-.+.+|++.+|.+.+... ++-.... ..
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 4678888888887643 33 45555544333345678999999998766542 2211000 01
Q ss_pred CCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccC----CC-CcceEEEccCceee
Q 014091 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IK-KEKAIIVQPHRVTV 340 (431)
Q Consensus 281 p~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~-~~~~I~Id~d~~~~ 340 (431)
...+|. |...+ .. .-+++||+||++|+...+.....+..+ -+ +.|+|.||+.....
T Consensus 152 ~~~~G~--ga~tn-s~-~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T 212 (649)
T cd02752 152 ANTFGR--GAMTN-SW-NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT 212 (649)
T ss_pred HhhcCC--CCCCC-CH-HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence 111232 21111 12 236899999999988764433222211 13 67999999876554
No 116
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=90.94 E-value=0.67 Score=47.12 Aligned_cols=114 Identities=25% Similarity=0.344 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceee-cCCCCCHHHHH
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSSSFCGE 298 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~-~G~~~~~~~~~ 298 (431)
.-+++++.+++.|+++++++++.|... .......+.+|++.+|..+- + .+. +. ..+...+.. .|... ....+
T Consensus 61 sWdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~-~-~~~--~~-~~~~~~~~~~~g~~~-~~~~d 133 (421)
T TIGR03129 61 SYEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVID-N-TAS--VC-HGPSLLALQEVGWPS-CTLGE 133 (421)
T ss_pred ChHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCcc-c-cch--hc-cccHHHHHHhcCCcc-ccHHH
Confidence 357889999999999999887755543 33455678899999886321 1 010 00 001111100 01111 11223
Q ss_pred HhhhCCEEEEeCCccCccccccc-----------ccC-CCCcceEEEccCceee
Q 014091 299 IVESADAYVFVGPIFNDYSSVGY-----------SLL-IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~-----------~~~-~~~~~~I~Id~d~~~~ 340 (431)
..+++|+||++|+.+.+.....+ ... .++.++|.||+.....
T Consensus 134 i~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t 187 (421)
T TIGR03129 134 VKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT 187 (421)
T ss_pred HhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence 33479999999988754332111 111 2356899998766544
No 117
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=90.92 E-value=1.6 Score=42.90 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=65.5
Q ss_pred ccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCC--
Q 014091 90 VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN-- 164 (431)
Q Consensus 90 ~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~-- 164 (431)
..++++..|=|+++ ..-++.-|...++|+|+|+-...-... + ..+.... ..|...+.+.+--...+|+.
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s-~--~~~~~~~---~~~~a~~A~a~G~~~~~Vdg~d 205 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMG-T--SVERSSS---VTDLYKRGESFGIPGERVDGMD 205 (315)
T ss_pred CCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcccc-C--CHHHHhC---CcCHHHHHHhCCCCEEEECCCC
Confidence 46777778888875 224466677889999999876531111 1 0010111 12455666666666667765
Q ss_pred cchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 165 LGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
++++.+.+.+|++.+...+||+.|++-..=.
T Consensus 206 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 236 (315)
T TIGR03182 206 VLAVREAAKEAVERARSGKGPILLEMKTYRF 236 (315)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEeCCcC
Confidence 5567888888998888888999999976643
No 118
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=90.84 E-value=4.8 Score=43.65 Aligned_cols=116 Identities=22% Similarity=0.134 Sum_probs=74.3
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|||. ..-|++++.+|.|.++..| ..++ .|..+=+.=+...|..+-..+.||+++.....-. .+.+...| |
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~TH------q 468 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPTH------Q 468 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCccc------C
Confidence 6665 7899999999999999878 4444 4554433344556677777889999997543332 33322333 2
Q ss_pred hHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhh-hCCCcEEEEEccCC
Q 014091 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTAL-KESKPVYISISCNL 194 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~-~~~GPv~l~iP~dv 194 (431)
...++.+++.+-... .+..++.++ ..+++.|. ...||+||-++..-
T Consensus 469 ~iedia~lr~iPn~~v~~PaD~~E~----~~~~~~a~~~~~gP~~irl~r~~ 516 (653)
T TIGR00232 469 PIEQLASLRAIPNLSVWRPCDGNET----AAAWKYALESQDGPTALILSRQN 516 (653)
T ss_pred CHHHHHHHhcCCCCEEEeeCCHHHH----HHHHHHHHhcCCCcEEEEEcCCc
Confidence 345678888765433 334444444 44555555 34799999999763
No 119
>PRK06163 hypothetical protein; Provisional
Probab=90.68 E-value=7.3 Score=35.57 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=57.2
Q ss_pred eCCcchHH-HHHHHHHhhhc-CCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheee-EEEcCCcchHHHHH
Q 014091 96 TFTVGGLS-VLNAIAGAYSE-NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELI 172 (431)
Q Consensus 96 t~GpG~~n-~~~gl~~A~~~-~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i 172 (431)
..|=|... .+..|..+... .+|+++|.-.......... +.... ....|+..+.+.+.-. .+++++++++...+
T Consensus 81 i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~---~~~~~-~~~~Df~~lA~a~G~~~~~~v~~~~el~~al 156 (202)
T PRK06163 81 LEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGG---QPTLT-SQTVDVVAIARGAGLENSHWAADEAHFEALV 156 (202)
T ss_pred EEcchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCC---ccCCC-CCCCCHHHHHHHCCCceEEEeCCHHHHHHHH
Confidence 34777653 45788887654 7899999876543322111 00010 1124677888877654 56888888877666
Q ss_pred HHHHHHhhhCCCcEEEEEccC
Q 014091 173 DTAISTALKESKPVYISISCN 193 (431)
Q Consensus 173 ~~A~~~A~~~~GPv~l~iP~d 193 (431)
++|+ ...||+.|++..|
T Consensus 157 ~~a~----~~~~p~lIeV~i~ 173 (202)
T PRK06163 157 DQAL----SGPGPSFIAVRID 173 (202)
T ss_pred HHHH----hCCCCEEEEEEec
Confidence 6665 4579999999876
No 120
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=90.67 E-value=0.49 Score=46.20 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhc----hHHHHHHHHHHhC----CCeEe---cCCCccc---------------
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADATG----YPIAI---MPSGKGL--------------- 275 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~----a~~~l~~lae~~~----~Pv~t---t~~gkg~--------------- 275 (431)
.+.+.++++++++|+..+|+.|-|..++. ..+...+|.+.|| +-+.. ...-.|.
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vd 311 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAVD 311 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceeee
Confidence 35788999999999999999999997762 2344444444443 22211 1111111
Q ss_pred CCCCCCCcceeecCCCCCHHHHHHh--hhCCEEEEeCCccCcccccccccCCCCcceEEEccCce
Q 014091 276 VPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 276 ~~~~hp~~~G~~~G~~~~~~~~~~~--~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~ 338 (431)
|...+|.|- -|.-.+.++| +++|..|++|+.+.......-...+...++|+||+.+.
T Consensus 312 F~rG~pryn------PgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 312 FSRGYPRYN------PGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred cccCCcCCC------cccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 122222211 0122456666 57999999999886433322223345778999998765
No 121
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=90.52 E-value=0.26 Score=48.18 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeec--------CCCCCHH
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYW--------GAVSSSF 295 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~--------G~~~~~~ 295 (431)
.-++++.+|.+|+..+|+-|+|..-..++..++|++|++...=++--.+-.-+-.+-|-.+-++. -.+.-+.
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPGHMNVLLAEA~VpYd~v~emdd 376 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPGHMNVLLAEAKVPYDIVLEMDE 376 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCcchhhhhhhccCCHHHHhhHHh
Confidence 34678899999999999999999877787777777777653322211111111112222222210 0112234
Q ss_pred HHHHhhhCCEEEEeCCcc
Q 014091 296 CGEIVESADAYVFVGPIF 313 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~ 313 (431)
.|.-+.+.|++++||+.-
T Consensus 377 IN~dF~~tDVvlVIGAND 394 (463)
T COG1282 377 INDDFADTDVVLVIGAND 394 (463)
T ss_pred hcchhccccEEEEEccCC
Confidence 555667899999999653
No 122
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=90.19 E-value=5.7 Score=35.10 Aligned_cols=134 Identities=17% Similarity=0.045 Sum_probs=73.0
Q ss_pred CCchHHHHHhhhcCCCceEEecCchhHHH---HhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeC
Q 014091 50 GDFNLTLLDHLIAEPELNLVGCCNELNAG---YAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVG 123 (431)
Q Consensus 50 G~~~~~l~~al~~~~~i~~v~~~hE~~A~---~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g 123 (431)
|.........+.-...-+++.... .+-+ -+|-|.+.... +.+|+ .|=|.. -....|..|...+.|+++|.-
T Consensus 25 g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i--~GDG~f~~~~~el~ta~~~~~p~~~iV~ 101 (178)
T cd02002 25 VTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAI--IGDGSFMYTIQALWTAARYGLPVTVVIL 101 (178)
T ss_pred CcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEE--EcCchhhccHHHHHHHHHhCCCeEEEEE
Confidence 444343433333212346666554 3322 25566665553 33443 455554 345788888899999999987
Q ss_pred CCCCcccCCC-------------ceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEE
Q 014091 124 GPNSNDYGTN-------------RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (431)
Q Consensus 124 ~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~i 190 (431)
+......-+. ......... ...|...+++.+--...++++++++.+.+++| ...+||+.|++
T Consensus 102 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~~~p~vi~v 176 (178)
T cd02002 102 NNRGYGALRSFLKRVGPEGPGENAPDGLDLLD-PGIDFAAIAKAFGVEAERVETPEELDEALREA----LAEGGPALIEV 176 (178)
T ss_pred cCccHHHHHHHHHHHcCCCcccccccccccCC-CCCCHHHHHHHcCCceEEeCCHHHHHHHHHHH----HhCCCCEEEEE
Confidence 6542111000 000000000 11367788888866677888866655555544 45679999987
Q ss_pred c
Q 014091 191 S 191 (431)
Q Consensus 191 P 191 (431)
.
T Consensus 177 ~ 177 (178)
T cd02002 177 V 177 (178)
T ss_pred E
Confidence 4
No 123
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=90.18 E-value=13 Score=32.90 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCch----HHHHHhhhc-CCCceEEe-cCchhHHHHhhhhhhhhcCccEEEEeCCcchH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFN----LTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~----~~l~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~ 102 (431)
..+.|.+.+++. -+.++.-.+... ...++.+.+ .++.|++. ...|++.+.+|.|+|+.-...++-.+..+=+.
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHH
Confidence 456666666554 333333222111 335666655 35568887 58999999999999995324444334444333
Q ss_pred HHHHHHHH--hhhc-------CCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcchHHHHH
Q 014091 103 SVLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGDAHELI 172 (431)
Q Consensus 103 n~~~gl~~--A~~~-------~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~~~~~i 172 (431)
.++--|.+ |+.+ +.||+++...... ...+. -| . ..| ..+++.+-.+... ..+++++...
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~-th-s-----~~~-~a~lr~iPg~~V~~Psd~~e~~~~- 150 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGA-QH-S-----QSL-EAWFAHIPGLKVVAPSTPYDAKGL- 150 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcCh-hh-h-----hhH-HHHHhcCCCCEEEeeCCHHHHHHH-
Confidence 33333321 3333 6999998733221 12221 12 1 123 5888888655543 3445555444
Q ss_pred HHHHHHhhhCCCcEEEEEcc
Q 014091 173 DTAISTALKESKPVYISISC 192 (431)
Q Consensus 173 ~~A~~~A~~~~GPv~l~iP~ 192 (431)
++.+....||+++.-|+
T Consensus 151 ---l~~~~~~~~P~~~~e~k 167 (167)
T cd07036 151 ---LKAAIRDDDPVIFLEHK 167 (167)
T ss_pred ---HHHHHhCCCcEEEEecC
Confidence 55555556999998774
No 124
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=90.15 E-value=1.8 Score=37.73 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=62.7
Q ss_pred HHhhhhhhhhcCccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC--------ceeeeecCCCChHHH
Q 014091 78 GYAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN--------RILHHTIGLPDFTQE 148 (431)
Q Consensus 78 ~~~A~gyar~tg~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--------~~~~~~~~~~~~~d~ 148 (431)
.-+|.|.+....-.-+++..|=|... .+..+..|...+.|+++|.-+.......+. ....... ...|.
T Consensus 52 ~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~---~~~d~ 128 (168)
T cd00568 52 LPAAIGAALAAPDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDL---SNPDF 128 (168)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccC---CCCCH
Confidence 33455655555312223334666553 568888999999999999876543221110 0000011 12366
Q ss_pred HHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
..+++.+--...++.+++++ ++|++.+.+..||+.|++.
T Consensus 129 ~~~a~~~G~~~~~v~~~~~l----~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 129 AALAEAYGAKGVRVEDPEDL----EAALAEALAAGGPALIEVK 167 (168)
T ss_pred HHHHHHCCCeEEEECCHHHH----HHHHHHHHhCCCCEEEEEE
Confidence 77888776666677776555 5555555566899999874
No 125
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=90.01 E-value=0.51 Score=44.42 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCCC-ccccccHHHHHHHHHHHh
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKL 362 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~~-~~~~~d~~~~L~~L~~~l 362 (431)
.+.+.++++|++|++|+++.-.....+.. ..++.++|.||.++..+.... ..-..|+.++|..|.+.+
T Consensus 170 ~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 170 EAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 34556789999999999886433222222 235788999999987654111 111237889998887654
No 126
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.01 E-value=3.1 Score=44.54 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=66.3
Q ss_pred CCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeee----e-cC-----CC--ChHHHHHHHhhheeeEE
Q 014091 97 FTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHH----T-IG-----LP--DFTQELRCFQAITCSQA 160 (431)
Q Consensus 97 ~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~----~-~~-----~~--~~~d~~~~~~~~~k~~~ 160 (431)
.|=|+.. ...-|..|.+.++|+++|.-.......-+. ..... . +. .. ...|+.++.+.+..+..
T Consensus 443 ~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 522 (588)
T TIGR01504 443 SGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI 522 (588)
T ss_pred EcchHhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEE
Confidence 4555553 357889999999999999976543211000 00000 0 00 00 01478899999999999
Q ss_pred EcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 161 VVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 161 ~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++++++++.+.+++|++......||+.|++..|-
T Consensus 523 ~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 523 RVFKPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred EECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 9999999988888888765445799999999874
No 127
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=89.91 E-value=3.1 Score=41.30 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=64.9
Q ss_pred cEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcc-
Q 014091 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG- 166 (431)
Q Consensus 91 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~- 166 (431)
.++++..|=|+++- .-++..|...++|+|+|+-......... .+... ...|.....+.+--...+|+..+
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~---~~~~~---~~~d~a~~a~a~G~~~~~Vdg~d~ 231 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMA---HHRST---SIPEIHKKAEAFGLPGIEVDGMDV 231 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecc---hhhee---CCccHHHHHHhCCCCEEEEeCCCH
Confidence 57777789998872 2256778888999999997654211100 01011 12356677777766777777655
Q ss_pred -hHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 167 -DAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 167 -~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
.+.+.+.+|++.|....||+.|++-.
T Consensus 232 ~av~~a~~~A~~~ar~~~gP~lIev~t 258 (341)
T CHL00149 232 LAVREVAKEAVERARQGDGPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 35667889999998888999999964
No 128
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=89.71 E-value=0.41 Score=45.15 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=44.9
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCCC-ccccccHHHHHHHHHHHh
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKL 362 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~~-~~~~~d~~~~L~~L~~~l 362 (431)
.+.+.+++||++|++|+++.......+.. ...+.++|.||.++..+.... .....++.++|.+|.+.+
T Consensus 171 ~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 171 EAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 34456789999999999987544333321 124678999999877654111 122347899999987744
No 129
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=89.63 E-value=2.9 Score=37.20 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=66.8
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH----HHHHHHH-HhhhcCCcEEEEeCCCCCcccCCCceeeee
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGL----SVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHT 139 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~----n~~~gl~-~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~ 139 (431)
|++. ...|++.+.+|.|+|...+ .-++..+.++=.. =....+. .....+.|+.+++ ..+... +.+...||
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~-~~g~~~-~~~G~tH~- 125 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGT-RAGLGY-GGDGGTHH- 125 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEE-EESGGG-STTGTTTS-
T ss_pred eEEecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceeccee-ecCccc-cccccccc-
Confidence 5555 6899999999999998874 4444344443222 1223333 4556777877333 333221 22222333
Q ss_pred cCCCChHHHHHHHhhheeeEEEc-CCcchHHHHHHHHHHHhhh--CCCcEEEEEccCC
Q 014091 140 IGLPDFTQELRCFQAITCSQAVV-NNLGDAHELIDTAISTALK--ESKPVYISISCNL 194 (431)
Q Consensus 140 ~~~~~~~d~~~~~~~~~k~~~~v-~~~~~~~~~i~~A~~~A~~--~~GPv~l~iP~dv 194 (431)
..+...+++.+-.+.... .+++++ ..+++.+.. .++||||.+|...
T Consensus 126 -----s~~d~~~~~~iPg~~v~~Psd~~e~----~~~l~~a~~~~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 126 -----SIEDEAILRSIPGMKVVVPSDPAEA----KGLLRAAIRRESDGPVYIREPRGL 174 (178)
T ss_dssp -----SSSHHHHHHTSTTEEEEE-SSHHHH----HHHHHHHHHSSSSSEEEEEEESSE
T ss_pred -----ccccccccccccccccccCCCHHHH----HHHHHHHHHhCCCCeEEEEeeHHh
Confidence 234578899887765543 334444 555666666 5799999999875
No 130
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.46 E-value=4.2 Score=39.12 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcc--hHH
Q 014091 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVG--GLS 103 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~--~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG--~~n 103 (431)
+-..|-+.|.+.|++ .+.-+.|.......-... ....+.+.| ..+.-+|.|-..+.- .-| ++.+|=| ..-
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~---~~~~~~~~~-G~alp~A~GaklA~Pd~~V-V~i~GDG~~f~i 92 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSSNLPEFL---NTYGIHGIH-GRVLPIATGVKWANPKLTV-IGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhc---cCCCccccc-ccHHHHHHHHHHHCCCCcE-EEEECChHHHHc
Confidence 446777888887753 333333333333222221 233446666 666677778777754 332 3334666 345
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---cee---ee----ecCCCC-hHHHHHHHhhhe-eeEEEc--CCcchHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RIL---HH----TIGLPD-FTQELRCFQAIT-CSQAVV--NNLGDAH 169 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~---~~----~~~~~~-~~d~~~~~~~~~-k~~~~v--~~~~~~~ 169 (431)
.++.|..|...++|+++|.-+......-++ +.. +. ..+..+ -.|...+.+.+- .|..+. .++++
T Consensus 93 g~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~-- 170 (279)
T PRK11866 93 GLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH-- 170 (279)
T ss_pred cHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH--
Confidence 789999999999999999865432211110 000 00 011110 026667776653 233332 34444
Q ss_pred HHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 170 ELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 170 ~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.++++.|...+||.+|++=..-
T Consensus 171 --l~~~l~~Al~~~Gps~I~v~~pC 193 (279)
T PRK11866 171 --LKEIIKEAIKHKGFSFIDVLSPC 193 (279)
T ss_pred --HHHHHHHHHhCCCCEEEEEeCCC
Confidence 45566666677899999986543
No 131
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=89.31 E-value=5.6 Score=38.71 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHcCC--CEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH--
Q 014091 28 TLGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL-- 102 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV--~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~-- 102 (431)
.+-..+.+.|.+.|+ +.+.-+.|.......-...+ ...+...| ..+.-+|.|...+.. .- |++.+|=|..
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~-VV~i~GDG~~~~ 102 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLE-VIVVGGDGDLAS 102 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCc-EEEEeCccHHHh
Confidence 455778888988877 44555555554332111111 12222233 334556666666554 32 3334577754
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---------ceeee-ecCCC-ChHHHHHHHhhhee-eE--EEcCCcchH
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---------RILHH-TIGLP-DFTQELRCFQAITC-SQ--AVVNNLGDA 168 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---------~~~~~-~~~~~-~~~d~~~~~~~~~k-~~--~~v~~~~~~ 168 (431)
-.++.+..|.+.++|+++|+-+......-++ ..... ..+.. .-.|...+.+.+-. +. .++.+++++
T Consensus 103 mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 103 IGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred ccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 3457789999999999999875432211110 00000 01110 11366677776643 22 267777777
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 169 HELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 169 ~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.|++|+ ..+||++|+|...-
T Consensus 183 ~~ai~~A~----~~~GpalIeV~~~C 204 (301)
T PRK05778 183 VELIKKAI----SHKGFAFIDVLSPC 204 (301)
T ss_pred HHHHHHHH----hCCCCEEEEEcCCC
Confidence 66666555 56899999997664
No 132
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.18 E-value=0.82 Score=47.34 Aligned_cols=117 Identities=15% Similarity=0.040 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCH
Q 014091 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (431)
Q Consensus 221 ~~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~ 294 (431)
-+++++.+++.|++ .+...++.|.+...........+|+..+|.+-+......+-.+......+|.. ..+
T Consensus 87 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~--~~~-- 162 (461)
T cd02750 87 WDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ--TDV-- 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC--CCC--
Confidence 56778888877763 22223334433222223455678999999876544332221222233333421 111
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceeec
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~~ 341 (431)
....-+++||+||++|+...+.....+..+ .++.|+|.||+......
T Consensus 163 ~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta 213 (461)
T cd02750 163 PESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSA 213 (461)
T ss_pred CChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcch
Confidence 112346899999999988754332221111 24679999998876553
No 133
>PRK11269 glyoxylate carboligase; Provisional
Probab=89.18 E-value=4 Score=43.72 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=73.5
Q ss_pred HHHhhhhhhhhcC-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCccc------C--CCceeeeecCC-C--
Q 014091 77 AGYAADGYARSRG-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDY------G--TNRILHHTIGL-P-- 143 (431)
Q Consensus 77 A~~~A~gyar~tg-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~------~--~~~~~~~~~~~-~-- 143 (431)
+.-+|-|.+.... .-|+++ .|=|.. =....|..|...++|+++|.-....... + ........+.. .
T Consensus 424 glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 502 (591)
T PRK11269 424 TIPAALGVRAADPDRNVVAL-SGDYDFQFLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP 502 (591)
T ss_pred hhhhHHhhhhhCCCCcEEEE-EccchhhcCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence 4445556555542 223333 355554 3567889999999999999876552210 0 00000000000 0
Q ss_pred ----ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 144 ----DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 144 ----~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.-.|+..+.+.+-.+..++++++++.+.+++|++......||+.|+|..|
T Consensus 503 ~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 503 ELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 01367888898888999999999998888888876544579999999976
No 134
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=89.18 E-value=8.7 Score=36.91 Aligned_cols=156 Identities=14% Similarity=0.045 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCC--CEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH-
Q 014091 29 LGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV- 104 (431)
Q Consensus 29 ~a~~l~~~L~~~GV--~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~- 104 (431)
.-+.+++.|.+.++ +.+.-+.|......+-... ....+.+.| ..+.-+|-|-..+.- .- +++.+|=|..-.
T Consensus 27 ~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~-VV~i~GDG~f~~~ 101 (277)
T PRK09628 27 ILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYV---NCNTVHTTH-GRAVAYATGIKLANPDKH-VIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccC---CCCceeecc-ccHHHHHHHHHHHCCCCe-EEEEECchHHHHh
Confidence 34667888888853 2333333333333322222 233444444 356667777777654 32 333456665532
Q ss_pred -HHHHHHhhhcCCcEEEEeCCCCCcccCCC--c-----e-eee--ecCC--CChHHHHHHHhhhee-e--EEEcCCcchH
Q 014091 105 -LNAIAGAYSENLPVICIVGGPNSNDYGTN--R-----I-LHH--TIGL--PDFTQELRCFQAITC-S--QAVVNNLGDA 168 (431)
Q Consensus 105 -~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--~-----~-~~~--~~~~--~~~~d~~~~~~~~~k-~--~~~v~~~~~~ 168 (431)
..-+..|...++|+++|.-.......-++ . . ... ..+. +. .|...+.+.+-- + ..++.+++++
T Consensus 102 g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~-~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 GGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPT-FDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred hHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCC-CCHHHHHHHCCCceEEEEccCCHHHH
Confidence 34555589999999999865432211100 0 0 000 0111 11 356777776643 3 2578888887
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 169 HELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 169 ~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.|++|+ ..+||++|++..+-
T Consensus 181 ~~al~~Al----~~~Gp~lIeV~~~c 202 (277)
T PRK09628 181 EKLLVKGF----SHKGFSFFDVFSNC 202 (277)
T ss_pred HHHHHHHH----hCCCCEEEEEcCCC
Confidence 66666655 46899999998664
No 135
>PRK12753 transketolase; Reviewed
Probab=89.10 E-value=3.3 Score=44.90 Aligned_cols=118 Identities=17% Similarity=0.070 Sum_probs=76.4
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCCh
Q 014091 67 NLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~ 145 (431)
|||. .--|++++.+|.|-+.-.|.=.++.|..+=+.=+...|..+-..+.||+++.....-.. +.+...|+ .
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~THq------~ 475 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPTHQ------P 475 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCcccc------c
Confidence 5444 67899999999999997773333344544444566667667788999999855444332 44333443 3
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
..++.++|.+-..... .|.+.. .+..+++.|.. ..||+||-++..-
T Consensus 476 iedla~lR~iPn~~v~--~PaD~~-E~~~~~~~al~~~~gP~~irl~R~~ 522 (663)
T PRK12753 476 VEQLASLRLTPNFSTW--RPCDQV-EAAVAWKLAIERHNGPTALILSRQN 522 (663)
T ss_pred HHHHHHHhcCCCCEEE--ccCCHH-HHHHHHHHHHhcCCCCEEEEecCCC
Confidence 4568888887654422 243332 33566677766 4799999999763
No 136
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=88.82 E-value=6.5 Score=42.00 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=68.9
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC-ceee--eecCC-CChHHHHHHH
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN-RILH--HTIGL-PDFTQELRCF 152 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~-~~~~--~~~~~-~~~~d~~~~~ 152 (431)
+|-|.+.... +.+|+ .|=|... .+..|..|...++|+++|.-.......-+. ...+ ...+. ....|+..+.
T Consensus 416 aAiGa~la~p~~~vv~i--~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA 493 (578)
T PRK06546 416 HAIGAQLADPGRQVISM--SGDGGLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIA 493 (578)
T ss_pred HHHHHHHhCCCCcEEEE--EcCchHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHHH
Confidence 5566665543 34444 4666553 457888999999999999876543221000 0000 01111 1124778888
Q ss_pred hhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+-....++++++++.+.+++|+ ...||+.|+|..|-
T Consensus 494 ~a~G~~~~~v~~~~el~~al~~a~----~~~gp~lIev~~~~ 531 (578)
T PRK06546 494 AALGIHAVRVEDPKDVRGALREAF----AHPGPALVDVVTDP 531 (578)
T ss_pred HHCCCeeEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 988888889999888866666665 45799999998763
No 137
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=88.77 E-value=18 Score=36.09 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCCCcccHHHHHHHHHHHcCC--CEEEecCCCch-----HHHHHhhhcCC-CceEEe-cCchhHHHHhhhhhhhhcC-cc
Q 014091 22 GGASVGTLGRHLARRLVEIGA--KDVFSVPGDFN-----LTLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRG-VG 91 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV--~~vFgvpG~~~-----~~l~~al~~~~-~i~~v~-~~hE~~A~~~A~gyar~tg-~g 91 (431)
|.-..++..+.+.+.|.+..- +.++.+.++.- ...++.+.+.- .=|++. ..-|++++.+|.|.|.. | ..
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~-G~~P 108 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMN-GLRP 108 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhC-CCEE
Confidence 333456777777777777643 35555555432 33355554432 134444 67999999999999995 6 55
Q ss_pred EEEEeCCcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-
Q 014091 92 ACVVTFTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV- 161 (431)
Q Consensus 92 v~~~t~GpG~~n~~~gl~~--A~~-------~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~- 161 (431)
+|......=...++--|.+ |+. -++||+++...-.. +.+...|+ +.. ..+++.+-.+...
T Consensus 109 vv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~---g~~G~tHs-----~~~--ea~lr~iPn~~V~~ 178 (355)
T PTZ00182 109 IAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAV---GHGGAYHS-----QSF--EAYFAHVPGLKVVA 178 (355)
T ss_pred EEEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCC---CCCCCccc-----chH--HHHHhcCCCCEEEe
Confidence 5543222111222222211 333 37888877422111 11122221 112 2788887655543
Q ss_pred cCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 162 VNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 162 v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
..++.++... ++.|....||+||..|..+.
T Consensus 179 Psd~~e~~~~----l~~a~~~~~P~~i~~p~~l~ 208 (355)
T PTZ00182 179 PSDPEDAKGL----LKAAIRDPNPVVFFEPKLLY 208 (355)
T ss_pred eCCHHHHHHH----HHHHHhCCCcEEEEeehHHh
Confidence 3445555444 44455557999999887654
No 138
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.72 E-value=8.2 Score=41.40 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=69.5
Q ss_pred HHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC-------CceeeeecCCCChHHH
Q 014091 78 GYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT-------NRILHHTIGLPDFTQE 148 (431)
Q Consensus 78 ~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~-------~~~~~~~~~~~~~~d~ 148 (431)
.-+|-|.+-... .- +++..|=|... ...-|..|.+.++|+++++-.......-+ +......... ...|+
T Consensus 436 lpaaiGa~lA~p~r~-Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~-~~~d~ 513 (595)
T PRK09107 436 LPAALGVQIAHPDAL-VIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTE-AMPDF 513 (595)
T ss_pred HHHHHHHHHhCCCCe-EEEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCC-CCCCH
Confidence 334455554443 22 23334666654 34779999999999999998755331100 0000000000 11367
Q ss_pred HHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..+.+.+..+..++++++++.+.+++|+. ..||+.|+|+.|-
T Consensus 514 ~~lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 514 VKLAEAYGAVGIRCEKPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 88899998899999999888777666653 4689999999874
No 139
>PLN02790 transketolase
Probab=88.51 E-value=4.1 Score=44.19 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=75.0
Q ss_pred eEEe-cCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~ 143 (431)
|||. .--|++++.+|.|-|+-. | ..+|. |..+=+.-+-..+..+-..+.||+++...-.-. .+.+...|
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~-tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~TH------ 464 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYCA-TFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTH------ 464 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEEE-ecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCc------
Confidence 5444 578999999999999985 7 45553 444433445567777788999999987433222 23333333
Q ss_pred ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
+...++.+++.+-..... +|.+..+ +..+++.|.. ..||+||-+|..-
T Consensus 465 q~iedla~lR~iPnl~V~--~PaD~~E-~~~~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 465 QPIEHLASLRAMPNILML--RPADGNE-TAGAYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred ccHHHHHHhcCCCCcEEE--eCCCHHH-HHHHHHHHHHcCCCCEEEEecCCC
Confidence 334568889888654432 2333333 3556666655 4699999999864
No 140
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.43 E-value=12 Score=39.91 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCCh
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDF 145 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~ 145 (431)
+.-+|-|.+.... +.+|+ .|=|... ...-|..|.+.++|+++|.-.......- .+.... .... .-
T Consensus 426 glpaaiGa~la~p~~~vv~i--~GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~-~~~~-~~ 501 (574)
T PRK07979 426 GLPAALGVKMALPEETVVCV--TGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQ-SYMQ-SL 501 (574)
T ss_pred HHHHHHHHHHhCCCCeEEEE--EcchhhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcccc-ccCC-CC
Confidence 3445555555543 33333 3555553 3478999999999999998765422110 000000 0000 01
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.|+..+.+.+..+..++++++++.+.+++|+.... ..||+.|+|..|-
T Consensus 502 ~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 502 PDFVRLAEAYGHVGIQISHPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 37788999998889999999999888888876432 3689999999873
No 141
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=88.38 E-value=8.8 Score=34.66 Aligned_cols=158 Identities=18% Similarity=0.064 Sum_probs=83.5
Q ss_pred ccHHHHHHHHHHHcCC---CE-EEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC--ccEEEEeCCcc
Q 014091 27 GTLGRHLARRLVEIGA---KD-VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVG 100 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV---~~-vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG 100 (431)
....+++.+.+.+.|+ +. ++.=-|.+ . +.+ ..-.+....... ..+.-+|-|.+.... +.+++ .|=|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~--~~~--~~~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i--~GDG 79 (193)
T cd03375 8 GSILKALAKALAELGIDPEKVVVVSGIGCS-S--RLP--YYFNTYGFHTLH-GRALAVATGVKLANPDLTVIVV--SGDG 79 (193)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCChh-c--eeh--hhccccchhhhh-ccHHHHHHHHHHhCCCCeEEEE--eccc
Confidence 3466788888888776 33 33333332 1 111 000121111000 223345666666553 33444 4666
Q ss_pred h-H-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCc---------eeeee-cCCC-ChHHHHHHHhhhe-eeE--EEcCC
Q 014091 101 G-L-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---------ILHHT-IGLP-DFTQELRCFQAIT-CSQ--AVVNN 164 (431)
Q Consensus 101 ~-~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~---------~~~~~-~~~~-~~~d~~~~~~~~~-k~~--~~v~~ 164 (431)
. . -.+..|..|...++|+++|.-+......-++. ..+.. .+.. ...|...+.+.+- ++. .++.+
T Consensus 80 s~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~ 159 (193)
T cd03375 80 DLAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGD 159 (193)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCC
Confidence 5 2 34678899999999999998765332211100 00000 0000 0135667777663 333 36777
Q ss_pred cchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 165 LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
++++.+.+++|+ ..+||+.|++..+-+.
T Consensus 160 ~~el~~al~~al----~~~gp~vIev~~~C~~ 187 (193)
T cd03375 160 IKQLKEIIKKAI----QHKGFSFVEVLSPCPT 187 (193)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEEECCCCC
Confidence 776655555555 4689999999877644
No 142
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.30 E-value=8.1 Score=41.27 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=71.1
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---cee-eeecCC--CChHHHHH
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RIL-HHTIGL--PDFTQELR 150 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~-~~~~~~--~~~~d~~~ 150 (431)
+|-|.+.... +.+|+ .|=|... ....|..|.+.++|+++|.-.......-+. ... .+..+. ....|...
T Consensus 438 aaiGa~la~p~~~Vv~i--~GDG~f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~ 515 (579)
T TIGR03457 438 TIIGAKIAAPDRPVVAY--AGDGAWGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAG 515 (579)
T ss_pred HHHhhhhhCCCCcEEEE--EcchHHhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHH
Confidence 5555555542 33443 4666554 358899999999999999876543211000 000 000010 01137788
Q ss_pred HHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+.+-.+..++++++++.+.+++|++.. ...+|+.|++..|-
T Consensus 516 lA~a~G~~g~~v~~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 516 IADAMGAKGVVVDKPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 88888888899999999988888887643 23589999999873
No 143
>PTZ00089 transketolase; Provisional
Probab=88.16 E-value=4.7 Score=43.82 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=74.5
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|||. .--|++++.+|.|-|+-.| ..++. |..+=+.=+...|..+-..+.||+++.....-. .+.+...| |
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~-tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~TH------q 475 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPFGA-TFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGPTH------Q 475 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEEEE-ehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCCCc------c
Confidence 5444 6789999999999999667 44444 444433446667788888999999996333222 23333333 3
Q ss_pred hHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 145 FTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
...++.+++.+-.-.. -.|.+..+ +..+++.|.. ..||+||-+|..-
T Consensus 476 ~iedia~lR~iPn~~V--~~PaD~~E-~~~~l~~al~~~~gP~~irl~R~~ 523 (661)
T PTZ00089 476 PVETLALLRATPNLLV--IRPADGTE-TSGAYALALANAKTPTILCLSRQN 523 (661)
T ss_pred cHHHHHHHhcCCCcEE--EecCCHHH-HHHHHHHHHHcCCCCEEEEecCCC
Confidence 3456888888754332 22333322 3556666663 4699999999864
No 144
>PRK12754 transketolase; Reviewed
Probab=88.03 E-value=4.7 Score=43.68 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=91.7
Q ss_pred HHHHHHHHHcC--CCEEEecCCCchH-HH-----HHhhhc-CCCceEEe-cCchhHHHHhhhhhhhhcCccEEEEeCCcc
Q 014091 31 RHLARRLVEIG--AKDVFSVPGDFNL-TL-----LDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTFTVG 100 (431)
Q Consensus 31 ~~l~~~L~~~G--V~~vFgvpG~~~~-~l-----~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~GpG 100 (431)
+...+.|.+.+ .+.++++.++-.. .. .+.+.+ .++ |+|. ---|++.+.+|.|.+.-.|.=.+..|..+=
T Consensus 359 ~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~-r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F 437 (663)
T PRK12754 359 KASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAG-NYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMF 437 (663)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCC-CeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHH
Confidence 44444444442 4556666554211 11 233322 234 6444 678999999999999977743344455444
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhh
Q 014091 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 101 ~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 180 (431)
..-+...|..+-..+.|++++........ +.+...| +...++.++|.+-..... +|.+..+ +..+++.|.
T Consensus 438 ~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~TH------q~iEdla~lR~iPn~~V~--~PaD~~E-~~~~~~~a~ 507 (663)
T PRK12754 438 VEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTH------QPVEQVASLRVTPNMSTW--RPCDQVE-SAVAWKYGV 507 (663)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCc------ccHHHHHHHhcCCCcEEe--cCCCHHH-HHHHHHHHH
Confidence 44566777777778999998875544443 4433334 334568888887654332 2444333 356667776
Q ss_pred hC-CCcEEEEEccC
Q 014091 181 KE-SKPVYISISCN 193 (431)
Q Consensus 181 ~~-~GPv~l~iP~d 193 (431)
.. .||+||-++..
T Consensus 508 ~~~~gP~yirl~R~ 521 (663)
T PRK12754 508 ERQDGPTALILSRQ 521 (663)
T ss_pred hCCCCCEEEEeCCC
Confidence 65 59999999975
No 145
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=87.99 E-value=0.42 Score=47.68 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcC-----CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCc-ceeecCCCCC
Q 014091 220 GLEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSS 293 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~-----rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~-~G~~~G~~~~ 293 (431)
.-+++++.+++.|++.+ +.+.+.++..........+.+|+..++.+.+.+...-...+....+. .|. +....
T Consensus 72 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (374)
T cd00368 72 SWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGG--GAPTN 149 (374)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCC--CCCCC
Confidence 35778888888888753 44444433332323444556688888888665543222111111111 011 11111
Q ss_pred HHHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceee
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~ 340 (431)
.. .-+++||+||++|+.+.+.....+.. ..++.|+|.||+.....
T Consensus 150 -~~-~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 150 -TL-ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred -CH-HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 22 33579999999998875433221111 12478999999887544
No 146
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=87.98 E-value=4.8 Score=36.00 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=60.3
Q ss_pred hhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcC-CcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhe
Q 014091 80 AADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSEN-LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156 (431)
Q Consensus 80 ~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~-~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (431)
+|-|.+.... +.+|+ .|=|... .+..+..+...+ .|+++|.-.......-.. +.... ....|...+.+.+-
T Consensus 50 aAiGa~la~~~~Vv~i--~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~---q~~~~-~~~~d~~~lA~a~G 123 (181)
T TIGR03846 50 IGLGLALATDRTVIVI--DGDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGN---QPTPA-SRRTDLELVAKAAG 123 (181)
T ss_pred HHHHHHHcCCCcEEEE--EcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccC---cCCCC-CCCCCHHHHHHHCC
Confidence 3444433334 44444 3666654 447788888888 599999865432211110 00000 01236777888876
Q ss_pred eeEEE-cCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 157 CSQAV-VNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 157 k~~~~-v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
-...+ +++++++.+.+ + +...+||+.|++..|
T Consensus 124 ~~~~~~v~~~~~l~~al----~-a~~~~~p~li~v~~~ 156 (181)
T TIGR03846 124 IRNVEKVADEEELRDAL----K-ALAMKGPTFIHVKVK 156 (181)
T ss_pred CCeEEEeCCHHHHHHHH----H-HHcCCCCEEEEEEeC
Confidence 55555 88877665555 3 444579999999876
No 147
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=87.98 E-value=0.7 Score=43.50 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=43.9
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCCC-ccccccHHHHHHHHHHHh
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKL 362 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~~-~~~~~d~~~~L~~L~~~l 362 (431)
...+++++||++|++|+++.-.....+... ..+.++|.|+.++....... .....++.++|.+|.+.+
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 455678899999999999875443333221 24778999999886443111 111136788888886654
No 148
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=87.93 E-value=12 Score=35.00 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=57.8
Q ss_pred EEEeCCcchH--HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCc-----eeee-----ecC-CCChHHHHHHHhhheeeE
Q 014091 93 CVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSNDYGTNR-----ILHH-----TIG-LPDFTQELRCFQAITCSQ 159 (431)
Q Consensus 93 ~~~t~GpG~~--n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~-----~~~~-----~~~-~~~~~d~~~~~~~~~k~~ 159 (431)
+++..|=|.. -.+..+.++...++|+++|.-+........+. ...+ ..+ .....|...+.+.+.-..
T Consensus 90 Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~ 169 (237)
T cd02018 90 VVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVY 169 (237)
T ss_pred EEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCE
Confidence 3334466643 24677788888999999998765432211100 0000 000 001236778888875544
Q ss_pred EE---cCCcchHHHHHHHHHHHhhh-CCCcEEEEEccCCC
Q 014091 160 AV---VNNLGDAHELIDTAISTALK-ESKPVYISISCNLP 195 (431)
Q Consensus 160 ~~---v~~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv~ 195 (431)
.+ +.+++++ ..|++.|.. .+||++|++..|..
T Consensus 170 ~~~~~v~~~~~l----~~al~~al~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 170 VARLSPALKKHF----LKVVKEAISRTDGPTFIHAYTPCI 205 (237)
T ss_pred EEEEccCCHHHH----HHHHHHHHhcCCCCEEEEEeCCCC
Confidence 43 6666655 455555555 68999999998763
No 149
>PRK08611 pyruvate oxidase; Provisional
Probab=87.91 E-value=7 Score=41.72 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=69.6
Q ss_pred HHhhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCC---CceeeeecCC-CChHHHHH
Q 014091 78 GYAADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGT---NRILHHTIGL-PDFTQELR 150 (431)
Q Consensus 78 ~~~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~---~~~~~~~~~~-~~~~d~~~ 150 (431)
.-+|-|.+... + +.+|++ |=|+. -.+..|..|...++|+++|.-.......-+ ........+. ....|+..
T Consensus 414 lpaaiGa~la~p~~~Vv~i~--GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~ 491 (576)
T PRK08611 414 LPGAIAAKIAFPDRQAIAIC--GDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAK 491 (576)
T ss_pred HHHHHHHHHhCCCCcEEEEE--cccHHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 34455555554 3 444443 54444 356899999999999999987654322100 0000000000 01247788
Q ss_pred HHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+.+-....++++++++.+.+++|+ ..+||+.|+|..|-
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 492 FAEACGGKGYRVEKAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 88888888899999888877777665 45799999999874
No 150
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=87.80 E-value=23 Score=35.39 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=88.6
Q ss_pred ccHHHHHHHHHHHcCCCE-EEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhcC--ccEEEEeCCcc
Q 014091 27 GTLGRHLARRLVEIGAKD-VFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVG 100 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~-vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG 100 (431)
++-.++|-..+....=+. |..-.|.....++..-... ..-+++..-.=..+.-+|.|.+.... +.+|+ .|=|
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i--~GDG 249 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCL--DGDG 249 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEE--EChH
Confidence 666777777777776544 4444454444444332110 02334433222334445666665543 34444 4666
Q ss_pred hHH-HHHHHHHhhhcCC-cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhe-eeEEEcCCcchHHHHHHHHHH
Q 014091 101 GLS-VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAIS 177 (431)
Q Consensus 101 ~~n-~~~gl~~A~~~~~-Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~i~~A~~ 177 (431)
+.. .+..+..+...+. |+++|.-+......-.+ +.+.. ...|...+++.+- .+..++.+++++.+.+++|
T Consensus 250 sflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~---q~~~~--~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a-- 322 (361)
T TIGR03297 250 AALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGG---QPTVS--QHLDFAQIAKACGYAKVYEVSTLEELETALTAA-- 322 (361)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCC---cCCCC--CCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHH--
Confidence 653 4567777777775 89888876554221111 11111 1246777777776 4677888887776666555
Q ss_pred HhhhCCCcEEEEEccCC
Q 014091 178 TALKESKPVYISISCNL 194 (431)
Q Consensus 178 ~A~~~~GPv~l~iP~dv 194 (431)
...+||++|++..+-
T Consensus 323 --~~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 323 --SSANGPRLIEVKVRP 337 (361)
T ss_pred --HhCCCcEEEEEEecC
Confidence 445799999998775
No 151
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=87.73 E-value=2.4 Score=45.25 Aligned_cols=115 Identities=14% Similarity=-0.006 Sum_probs=69.8
Q ss_pred HhhhhhhhhcCccEEEEeCCcchHHHH---HHHHHhhhcCCcEEEEeCCCCCcccCCC--cee---------eeecCC-C
Q 014091 79 YAADGYARSRGVGACVVTFTVGGLSVL---NAIAGAYSENLPVICIVGGPNSNDYGTN--RIL---------HHTIGL-P 143 (431)
Q Consensus 79 ~~A~gyar~tg~gv~~~t~GpG~~n~~---~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--~~~---------~~~~~~-~ 143 (431)
-+|-|++..+--.-+++..|=|..+.. ..+..|...+.|+++|.-.......-+. ..+ ++..+. .
T Consensus 437 p~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (569)
T PRK08327 437 GAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDF 516 (569)
T ss_pred HHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccC
Confidence 344444444311223333466665432 2466788889999998876542211000 000 000010 0
Q ss_pred -ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 144 -DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 144 -~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
...|...+.+.+--+..++++++++.+.+++|+....++.||+.|++..|
T Consensus 517 ~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 517 DPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred CCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 12467888888887889999999999999999887655678999999875
No 152
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=87.54 E-value=1.6 Score=42.42 Aligned_cols=105 Identities=25% Similarity=0.210 Sum_probs=64.5
Q ss_pred hhhhh---cC-ccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh--
Q 014091 83 GYARS---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-- 153 (431)
Q Consensus 83 gyar~---tg-~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 153 (431)
|+++. .| ..|+++..|=|+++ ..-+|--|...+.|||+|+-...-..... .++....... ....+
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~---~~~~~~~~~~---~~~a~~~ 185 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTP---TEEQTASPDI---ADRAKGY 185 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEE---HHHHCSSSTS---GGGGGGT
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccC---ccccccccch---hhhhhcc
Confidence 55543 45 68888888988875 55667778889999999997543211100 0000000011 11122
Q ss_pred hheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 154 ~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+.-....=.++..+-+.+.+|++.+..++||++|++=..
T Consensus 186 gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~ty 225 (300)
T PF00676_consen 186 GIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTY 225 (300)
T ss_dssp TSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE-
T ss_pred CCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 2344555666788899999999999999999999998643
No 153
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=87.39 E-value=24 Score=39.60 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=110.9
Q ss_pred CcccHHHHHHHHHHHcC-----CCEEEecCCCchHH-----H---------------------HHhhhcCCCceEEe-cC
Q 014091 25 SVGTLGRHLARRLVEIG-----AKDVFSVPGDFNLT-----L---------------------LDHLIAEPELNLVG-CC 72 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~G-----V~~vFgvpG~~~~~-----l---------------------~~al~~~~~i~~v~-~~ 72 (431)
..+..-.+..+.|.+.+ .++|.++..+-... + +....++..=|++. -.
T Consensus 501 ~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GI 580 (896)
T PRK13012 501 KEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGI 580 (896)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecch
Confidence 44666677777777776 66777665443311 1 11122221123443 67
Q ss_pred chhHH----HHhhhhhhhhcC-ccEEEEeCCc-chHHHHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCCh
Q 014091 73 NELNA----GYAADGYARSRG-VGACVVTFTV-GGLSVLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDF 145 (431)
Q Consensus 73 hE~~A----~~~A~gyar~tg-~gv~~~t~Gp-G~~n~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~ 145 (431)
.|+++ +.++.||+.-.+ .-.+..|..+ |..=+.--+-.+-..+.. +++++.. .....+.+...|+ .
T Consensus 581 aEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~-gg~tlg~dG~THQ------~ 653 (896)
T PRK13012 581 TEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATA-GRTTLGGEGLQHQ------D 653 (896)
T ss_pred hhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeC-cccccCCCCCCCc------c
Confidence 89999 445555554433 3333344442 121111222122222334 4444433 3322233222332 2
Q ss_pred HHHHHHHhhhee-eEEEcCCcchHHHHHHHHHHHhhhC--CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHH
Q 014091 146 TQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLE 222 (431)
Q Consensus 146 ~d~~~~~~~~~k-~~~~v~~~~~~~~~i~~A~~~A~~~--~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (431)
...+.+++.+-. ..++..+..++...++.|++.+... .+|+||-+...-.. ++.. +... +
T Consensus 654 ~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~--~p~~-~~~~--------------~ 716 (896)
T PRK13012 654 GHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYA--QPAL-PEGA--------------E 716 (896)
T ss_pred hHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCC--CCCC-Cccc--------------h
Confidence 344667787643 4566677778888888888765333 58999999754321 1110 0000 0
Q ss_pred HHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCC--CeEecC
Q 014091 223 AAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGY--PIAIMP 270 (431)
Q Consensus 223 ~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~--Pv~tt~ 270 (431)
..+.+-.-.|.+.+ .-+.|+|.|..-..+.++...|++.+|+ -|+.-+
T Consensus 717 ~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~ 768 (896)
T PRK13012 717 EGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVT 768 (896)
T ss_pred hccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECC
Confidence 01111112222222 2477778887666677888888888675 455433
No 154
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=87.38 E-value=4.5 Score=36.76 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhc-----CCCceEEecCchhHH--HHhh-----hhhhhh---cC
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNA--GYAA-----DGYARS---RG 89 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~-----~~~i~~v~~~hE~~A--~~~A-----~gyar~---tg 89 (431)
...++.|++.|.+.+-=++||+-|+.... +...|.. +++++.+....+..- +..- +-|+|. ..
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~ 107 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALG 107 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcC
Confidence 45778888888888988999999887653 3333321 356777744322221 1111 123332 22
Q ss_pred -c-cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 90 -V-GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 90 -~-gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
. -++++-|+.|.+ |.+.++.-|+..+.|+|.||+.....
T Consensus 108 ~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 3 355556666655 89999999999999999999976544
No 155
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=87.19 E-value=1.5 Score=44.48 Aligned_cols=111 Identities=14% Similarity=0.010 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcC------CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceee-cCCCCC
Q 014091 221 LEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSS 293 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~------rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~-~G~~~~ 293 (431)
-+++++.+++.|++.+ ...++.|... .......+.+|++.+|.|.+........+ ....+.. .+..+.
T Consensus 71 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 145 (414)
T cd02772 71 WETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDF----RDDAKASGAPWLGM 145 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCcc----chhhhhccCCCCCC
Confidence 5678888888887642 2333444433 22345678899999998876432111100 0001110 011222
Q ss_pred HHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCce
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRV 338 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~ 338 (431)
. ..-++++|+||++|+.+.+.....+..+ .++.|+|.||+-..
T Consensus 146 -~-~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 146 -P-IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred -c-HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 1 2347889999999998754332111111 24678999997544
No 156
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=87.03 E-value=17 Score=38.79 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHHHc-CCCEEEecCCCchHHHHHhhhcCCCceEEecCchh---HHHHhhhhhhhhc-C-ccEEEEeCCcc
Q 014091 27 GTLGRHLARRLVEI-GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSR-G-VGACVVTFTVG 100 (431)
Q Consensus 27 ~~~a~~l~~~L~~~-GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~---~A~~~A~gyar~t-g-~gv~~~t~GpG 100 (431)
++... +++.|.+. . +.++..-++........+.+...-+|+.+..=. .+.-+|-|.+... + +.+|+ +|=|
T Consensus 383 l~~~~-~~~~l~~~~~-d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i--~GDG 458 (585)
T CHL00099 383 LSPQE-VINEISQLAP-DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI--SGDA 458 (585)
T ss_pred cCHHH-HHHHHHhhCC-CeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEE--Ecch
Confidence 44433 55555443 3 666654443322222222211123555443211 1233445555554 3 33433 3555
Q ss_pred hHH-HHHHHHHhhhcCCcEEEEeCCCCCccc--------CCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHH
Q 014091 101 GLS-VLNAIAGAYSENLPVICIVGGPNSNDY--------GTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHEL 171 (431)
Q Consensus 101 ~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~--------~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~ 171 (431)
... .+..|..|...++|++++.-....... ......+..+..+ -.|+..+.+.+.-+..++++++++.+.
T Consensus 459 ~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~-~~d~~~la~a~G~~~~~v~~~~el~~a 537 (585)
T CHL00099 459 SFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEG-APDFVKLAEAYGIKGLRIKSRKDLKSS 537 (585)
T ss_pred hhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCC-CCCHHHHHHHCCCeEEEeCCHHHHHHH
Confidence 554 347888999999999999876542111 0001111001001 136788889998888999998887776
Q ss_pred HHHHHHHhhhCCCcEEEEEccCC
Q 014091 172 IDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 172 i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+++|+. ..||+.|++..|-
T Consensus 538 l~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 538 LKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHh----CCCCEEEEEEECC
Confidence 666654 5689999999873
No 157
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=86.96 E-value=1.7 Score=46.67 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.-+++++.+++.|++.++..++.|..... +....+.+|++.+|.+-+.....-.... ..+...+. ..|. . ..-
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~~-e~~~~~~~~~~~lGt~~~~~~~~~~~~~-~~~~~~~~---~~g~-~-~~d 359 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSSL-EELFALKKLVRKLGSENFDLRIRNYEFE-SADLRANY---LFNT-T-LAD 359 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCCH-HHHHHHHHHHHHhCCCcccccccccccc-cchhhccc---ccCC-C-HHH
Confidence 35778999999999886667776654432 3446788999999876443222111100 00111111 1121 1 234
Q ss_pred hhhCCEEEEeCCccCcccccccccC----CCC-cceEEEccCceeec
Q 014091 300 VESADAYVFVGPIFNDYSSVGYSLL----IKK-EKAIIVQPHRVTVG 341 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~~~~~~~~~~----~~~-~~~I~Id~d~~~~~ 341 (431)
++++|+||++|+.+.+.....+..+ .++ .|+|.||+......
T Consensus 360 i~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta 406 (603)
T TIGR01973 360 IEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLT 406 (603)
T ss_pred HHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccch
Confidence 6789999999998765443222211 123 79999998765553
No 158
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=86.81 E-value=5 Score=41.15 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred ccEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCc-
Q 014091 90 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL- 165 (431)
Q Consensus 90 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~- 165 (431)
..++++..|=|.++- .-+|.-|...++|+|+++-..... .+. .+ ..++. ..+.....+.+--...+|+..
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~---~~-~~~t~-~~dia~~A~a~G~~~~~VDG~D 296 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGM---SH-LRATS-DPEIWKKGPAFGMPGVHVDGMD 296 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecc---ee-eeccC-CCCHHHHHHhcCCcEEEECCCC
Confidence 356777789888762 336777888999999999654211 110 00 01111 124555666665555666543
Q ss_pred -chHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 166 -GDAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 166 -~~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
..+.+.+.+|++.|....||+.|++-.
T Consensus 297 ~~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 297 VLKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 356677789999999889999999764
No 159
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=86.76 E-value=0.71 Score=43.29 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=38.7
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc-CCCCcceEEEccCceeecCCCc---cccccHHHHHHHH
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVGNGPS---LGWVFMADFLSAL 358 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~I~Id~d~~~~~~~~~---~~~~d~~~~L~~L 358 (431)
.+.+.+++||++|+||+++.-.....+.. ...+.++|.|+.++........ +...++.++|..|
T Consensus 168 ~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 34456788999999999987544322221 1245788889988764420011 1123677777654
No 160
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=86.61 E-value=4 Score=43.17 Aligned_cols=106 Identities=10% Similarity=-0.032 Sum_probs=68.7
Q ss_pred hhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeee--cCCCChHHHHHHHhhhee
Q 014091 82 DGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT--IGLPDFTQELRCFQAITC 157 (431)
Q Consensus 82 ~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~k 157 (431)
-|.+.... +.|++ .|=|+.. .+.-|..|.+.++|+++|.-.......-+. .|.. .......|...+.+.+..
T Consensus 413 iGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~--~~~~~~~~~~~~~d~~~lA~a~G~ 488 (535)
T TIGR03394 413 IGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV--FQPESAFNDLDDWRFADMAAGMGG 488 (535)
T ss_pred HHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh--hccCCCcccCCCCCHHHHHHHcCC
Confidence 33344443 34443 5777665 458999999999999999976553322110 1110 000112477888999988
Q ss_pred eEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 158 SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 158 ~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+..++++++++...+++|+. ...+|+.|++..|-
T Consensus 489 ~~~~v~~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 489 DGVRVRTRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred CceEeCCHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 89999999888777777764 12358899998763
No 161
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.59 E-value=15 Score=39.20 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccc--------CCCceeeeecCCCCh
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDY--------GTNRILHHTIGLPDF 145 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~--------~~~~~~~~~~~~~~~ 145 (431)
+.-+|-|++.... ..+|+ .|=|... .+..|..|...++|+++|.-....... ..+......+. ..
T Consensus 426 ~lp~aiGa~la~p~~~vv~i--~GDG~f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~--~~ 501 (574)
T PRK06882 426 GLPAAIGVKFAHPEATVVCV--TGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMN--SL 501 (574)
T ss_pred hhHHHHHHHhhcCCCcEEEE--EcchhhhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCC--CC
Confidence 3445556555442 33333 4555553 357899999999999999877553210 00000000000 11
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.|...+.+.+.-+..++++++++.+.+++|+.. .++|+.|++..|-
T Consensus 502 ~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 502 PDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred CCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 367888888888888999998887777776643 3689999999874
No 162
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=86.59 E-value=5.1 Score=42.96 Aligned_cols=101 Identities=9% Similarity=-0.057 Sum_probs=64.9
Q ss_pred EEeCCcchHH--HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee----eecC-CCChHHHHHHHhhheeeEEEcCCcc
Q 014091 94 VVTFTVGGLS--VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH----HTIG-LPDFTQELRCFQAITCSQAVVNNLG 166 (431)
Q Consensus 94 ~~t~GpG~~n--~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~k~~~~v~~~~ 166 (431)
++..|=|..- .+..|.+|...++|+++|.-+......-.+...+ ...+ ...-.|...+.+.+.-...++.+++
T Consensus 425 v~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~ 504 (595)
T TIGR03336 425 VAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPL 504 (595)
T ss_pred EEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcC
Confidence 3344666553 3799999999999999998765433211100000 0000 0012467888888877778888887
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 167 DAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
++.+ +.+|++.+...+||..|.+..+-.
T Consensus 505 ~l~~-l~~al~~a~~~~gp~li~v~~~C~ 532 (595)
T TIGR03336 505 NVKE-TIEVFKAALAAEGVSVIIAKQPCV 532 (595)
T ss_pred CHHH-HHHHHHHHHhcCCCEEEEEcccCc
Confidence 7642 566677776678999999987764
No 163
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=86.49 E-value=2.8 Score=42.05 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
.-+++++.+++.|++.+ ...++.|... ..+....+.+|++.+|.+-+.+.......+. .....+ .++. ...
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~-~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~---~~~~~~--~~~~-~~~ 141 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLA-DVESMVALKDLLNKLGSENLACEQDGPDLPA---DLRSNY--LFNT-TIA 141 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCccccccccccccc---cccccc--ccCC-CHH
Confidence 35788999999998765 5566655433 2234567889999999876554322111111 111111 1111 222
Q ss_pred HHhhhCCEEEEeCCccCcccc-cccc---cCC-CCcceEEEccCce
Q 014091 298 EIVESADAYVFVGPIFNDYSS-VGYS---LLI-KKEKAIIVQPHRV 338 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~~-~~~~---~~~-~~~~~I~Id~d~~ 338 (431)
-+++||+||++|+.+.+... ..+. ... .+.++|.||+...
T Consensus 142 -di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 142 -GIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred -HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 35899999999998743321 1121 112 3679999987654
No 164
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=86.43 E-value=14 Score=39.49 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=87.1
Q ss_pred HHHHHHHHc-CCCEEEecC-CCchHHHHHhhhcCCCceEEecCch---hHHHHhhhhhhhhcC--ccEEEEeCCcchH-H
Q 014091 32 HLARRLVEI-GAKDVFSVP-GDFNLTLLDHLIAEPELNLVGCCNE---LNAGYAADGYARSRG--VGACVVTFTVGGL-S 103 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vFgvp-G~~~~~l~~al~~~~~i~~v~~~hE---~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n 103 (431)
.+.+.|.+. .=+.++..- |.........+.....-+|+....= ..+.-+|-|.+.... +.+|+ .|=|.. -
T Consensus 363 ~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i--~GDGsf~m 440 (574)
T PRK09124 363 YLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL--SGDGGFSM 440 (574)
T ss_pred HHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE--ecCcHHhc
Confidence 345555443 224555444 3332222222222223556643221 124455566655443 33443 355544 3
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCc-eeee--ecCC-CChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHh
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHH--TIGL-PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~-~~~~--~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A 179 (431)
.+..|..|...++|+++|.-.......-+.. ..+. ..+. ....|...+.+.+....+++++++++.+.+++|+
T Consensus 441 ~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~--- 517 (574)
T PRK09124 441 LMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAF--- 517 (574)
T ss_pred cHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH---
Confidence 5688999999999999998765422110000 0000 0111 0113678899999888899999888877777665
Q ss_pred hhCCCcEEEEEccCC
Q 014091 180 LKESKPVYISISCNL 194 (431)
Q Consensus 180 ~~~~GPv~l~iP~dv 194 (431)
...||+.|++..|-
T Consensus 518 -~~~~p~lIev~i~~ 531 (574)
T PRK09124 518 -AHDGPALVDVVTAK 531 (574)
T ss_pred -hCCCCEEEEEEecC
Confidence 35799999999873
No 165
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=86.42 E-value=1.2 Score=48.30 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHHHH-hCCCeEecCCCcccCCC--CCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg~~~~--~hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++ .++..++.|.+... .....+.+|++. +|.+-+.+...-+..+. .+...+|. +..
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~--~~~ 146 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTN-EENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGI--GAM 146 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc-HHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCC--CCC
Confidence 56788888888873 34566677765442 344567899996 88875553321111111 11122232 111
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceee
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~ 340 (431)
+. . ..-+++||+||++|+.+.+.....+.. ..++.|+|.||+.....
T Consensus 147 ~~-~-~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~t 197 (671)
T TIGR01591 147 SN-T-ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTET 197 (671)
T ss_pred CC-C-HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 11 1 234788999999999875433211111 12578999999876543
No 166
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=86.28 E-value=3.6 Score=46.46 Aligned_cols=118 Identities=13% Similarity=-0.039 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCC
Q 014091 220 GLEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~ 293 (431)
.-+++++.+++.|.+ .+...++.|.+...........+|+..+|.+........+.....++...|.. ..+.
T Consensus 140 SWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~--~~~~ 217 (912)
T TIGR03479 140 SWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKA--HDSA 217 (912)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccC--ccCC
Confidence 356778888877754 33333344544433222344678999988764332211111222233333421 1111
Q ss_pred HHHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceeec
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~~ 341 (431)
. ..-+.+||+||++|+...+.....+.. ..++.|+|.||++.....
T Consensus 218 -~-~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA 267 (912)
T TIGR03479 218 -T-SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPST 267 (912)
T ss_pred -c-hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhh
Confidence 1 233579999999998875433222211 124789999999876553
No 167
>PLN02470 acetolactate synthase
Probab=86.26 E-value=23 Score=37.85 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccc--------CCCceeeeecCCC-
Q 014091 76 NAGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDY--------GTNRILHHTIGLP- 143 (431)
Q Consensus 76 ~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~--------~~~~~~~~~~~~~- 143 (431)
.+.-+|-|.+.... +.+|+ .|=|+.. ....|..|...++|+++|.-....... ......+..++.+
T Consensus 430 ~glpaaiGa~la~p~~~Vv~i--~GDG~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~ 507 (585)
T PLN02470 430 FGLPAAIGAAAANPDAIVVDI--DGDGSFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPD 507 (585)
T ss_pred chHHHHHHHHHhCCCCcEEEE--EccchhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccc
Confidence 35555666666553 34444 3555553 458899999999999999876543210 0001111111110
Q ss_pred ----ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 144 ----DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 144 ----~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...|...+.+.+--...++++++++.+.+++|+. ..+|+.|+|+.|-
T Consensus 508 ~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 508 AEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0147788899888888999999888777777653 4689999999873
No 168
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=86.25 E-value=0.55 Score=46.43 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCeEec--CCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEE
Q 014091 255 FIELADATGYPIAIM--PSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (431)
Q Consensus 255 l~~lae~~~~Pv~tt--~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~ 332 (431)
+-.=+-+.++|++-. ..-.|-+|+-+.. -+-++.+.++.++.+|+||.+.+.+-+..+++... ...++++
T Consensus 296 imy~cvk~~VPfVLAGSIRDDGPLPdvitD------v~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~P--s~v~~~c 367 (407)
T TIGR00300 296 VMYECVKNNIPYVLAGSIRDDGPLPDVITD------VVRAQSKMRELLQGADMVLMLSTMLHSIAVGNLLP--SGVKTIC 367 (407)
T ss_pred hHHHHHhCCCCEEEeeeccCCCCCCcchhh------HHHHHHHHHHHhccCCeehhHHHHHHHHhhccccc--ccceEEE
Confidence 334455689999874 3344555554332 12345566777889999999999998777766542 3458999
Q ss_pred EccCceeecC----CCccc--c-ccHHHHHHHHHHHhc
Q 014091 333 VQPHRVTVGN----GPSLG--W-VFMADFLSALAKKLR 363 (431)
Q Consensus 333 Id~d~~~~~~----~~~~~--~-~d~~~~L~~L~~~l~ 363 (431)
||++|....+ +.... - .|+.+||..|.+.|.
T Consensus 368 VDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 368 VDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred EECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 9999987642 11111 1 289999999988765
No 169
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=86.20 E-value=1.1 Score=43.16 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=45.2
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCCCc--cccccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGPS--LGWVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~~~--~~~~d~~~~L~~L~~~l~ 363 (431)
.+.+.++++|++|++|+++.......+.. ...+.++|.||.++.... ... .-..|+.++|..|.+.|.
T Consensus 207 ~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~-~~~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 207 AARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRAD-PLLTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCC-cceeEEEeCCHHHHHHHHHHHhC
Confidence 34556789999999999997543322221 123568999999877554 211 112388999999987765
No 170
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=86.15 E-value=6.2 Score=41.73 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=70.4
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC---CceeeeecCC-CChHHHH
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT---NRILHHTIGL-PDFTQEL 149 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~---~~~~~~~~~~-~~~~d~~ 149 (431)
+.-+|-|.+... + +.+|+ .|=|... ....|..|...++|+++|.-.......-+ ........+. ....|..
T Consensus 413 ~lpaaiGa~la~~~~~vv~i--~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~ 490 (539)
T TIGR02418 413 ALPWAIGAALVRPNTKVVSV--SGDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFV 490 (539)
T ss_pred HHHHHHHHHHhCCCCcEEEE--EcchhhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHH
Confidence 344556655554 3 44444 3666554 45789999999999999987654221100 0000000010 0114778
Q ss_pred HHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+.+.+..+..++++++++.+.+++|+ ...||..|++..|
T Consensus 491 ~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~v~ 530 (539)
T TIGR02418 491 KYAESFGAKGLRVESPDQLEPTLRQAM----EVEGPVVVDIPVD 530 (539)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 899999889999999988877777765 3578999999986
No 171
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=85.97 E-value=25 Score=31.31 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=60.3
Q ss_pred hhhhhhhhcCccEEEEeCCcchHHH-HHHHHHhhhcCC-cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhee
Q 014091 80 AADGYARSRGVGACVVTFTVGGLSV-LNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC 157 (431)
Q Consensus 80 ~A~gyar~tg~gv~~~t~GpG~~n~-~~gl~~A~~~~~-Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k 157 (431)
+|-|.+.... .-+++..|=|.... +..+..+...+. |+++|.-.......... +.. ......|...+.+.+--
T Consensus 50 ~AiGaala~~-~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~---~~~-~~~~~~d~~~lA~a~G~ 124 (179)
T cd03372 50 IGLGLALAQP-RKVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGN---QPT-HAGKKTDLEAVAKACGL 124 (179)
T ss_pred HHHHHHhcCC-CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCC---CCC-CCCCCCCHHHHHHHcCC
Confidence 4444443332 23344457777753 678889888885 68888654432211110 000 00112366777888766
Q ss_pred eEEEcC-CcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 158 SQAVVN-NLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 158 ~~~~v~-~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...++. +++++.+.+++|+ +||..|++..|-
T Consensus 125 ~~~~v~~~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 125 DNVATVASEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CeEEecCCHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 666776 6666655555554 689999999863
No 172
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.92 E-value=14 Score=39.37 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHHhhhc-CCCceEEecCch---hHHHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCC
Q 014091 54 LTLLDHLIA-EPELNLVGCCNE---LNAGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 54 ~~l~~al~~-~~~i~~v~~~hE---~~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
......+.. .++.+++....= ..+.-+|-|.+.... +.+|+ .|=|... .+..|..|...++|+++|.-...
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i--~GDGsf~~~~~el~ta~~~~l~~~~vv~NN~ 492 (578)
T PRK06112 415 IWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICL--VGDGGFAHVWAELETARRMGVPVTIVVLNNG 492 (578)
T ss_pred HHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEE--EcchHHHhHHHHHHHHHHhCCCeEEEEEeCC
Confidence 344444432 234456655432 234556666665543 34444 3555553 56888899999999999987764
Q ss_pred CcccCCCceeee-ecCC------CChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 127 SNDYGTNRILHH-TIGL------PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 127 ~~~~~~~~~~~~-~~~~------~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.....+. .+. .++. ..-.|+..+.+.+--...++++++++.+.+++| ...+||+.|++..|-
T Consensus 493 ~~g~~~~--~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a----~~~~gp~lIev~~~~ 561 (578)
T PRK06112 493 ILGFQKH--AETVKFGTHTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAA----MAAPGPTLIEVITDP 561 (578)
T ss_pred ccCCEEe--ccccccCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence 3111000 000 0000 011367788888877788898888775555555 446799999998763
No 173
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=85.81 E-value=24 Score=31.15 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred HHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeeeecCC-CChHHHHH
Q 014091 78 GYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIGL-PDFTQELR 150 (431)
Q Consensus 78 ~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~~~~~-~~~~d~~~ 150 (431)
.-+|-|.+... + +.+|++ |=|... .+..|..+...++|+++|.-........+. ..-....+. ....|...
T Consensus 57 ~~~aiGa~~a~~~~~vv~i~--GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 57 LPGAIAAKLAYPDRQVIALS--GDGGFAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHHHHHHHhCCCCcEEEEE--cchHHHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence 33445555443 3 555554 444442 367888899999999999876543211000 000000110 01136677
Q ss_pred HHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+.+.+--...++++++++.+ +++.+....+|+.|++..|
T Consensus 135 la~a~G~~~~~v~~~~el~~----~l~~a~~~~~p~liev~~~ 173 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEA----ALDEALAADGPVVIDVVTD 173 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHH----HHHHHHhCCCCEEEEEEeC
Confidence 88887666778888776654 4555555679999999865
No 174
>PRK05899 transketolase; Reviewed
Probab=85.74 E-value=8.5 Score=41.55 Aligned_cols=115 Identities=22% Similarity=0.190 Sum_probs=71.5
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|++. ..-|++++.+|.|+|...+ ..++. |..+=..-+...+..+...+.|++++....... .+.+...| +
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~-t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~-~g~~G~tH------q 439 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFGG-TFLVFSDYARNAIRLAALMKLPVIYVFTHDSIG-VGEDGPTH------Q 439 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEEE-EcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-cCCCCCCc------c
Confidence 5555 7889999999999998764 34443 333333345556666666889999997544332 12222233 2
Q ss_pred hHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
....+.+++.+-... ....+++++.. +++.|... ++|+||-+|..
T Consensus 440 ~~edia~~r~iP~~~V~~P~d~~e~~~----~l~~a~~~~~~P~~ir~~r~ 486 (624)
T PRK05899 440 PVEQLASLRAIPNLTVIRPADANETAA----AWKYALERKDGPSALVLTRQ 486 (624)
T ss_pred cHHHHHHHHhCCCcEEEeCCCHHHHHH----HHHHHHHcCCCCEEEEEeCC
Confidence 234567888876544 34444555544 45555555 79999999864
No 175
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.61 E-value=17 Score=39.07 Aligned_cols=154 Identities=10% Similarity=0.081 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCEEEecCCCch-HHHHHhhhcCCCceEEecCchh---HHHHhhhhhhhhcC--ccEEEEeCCcchHH-H
Q 014091 32 HLARRLVEIGAKDVFSVPGDFN-LTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG--VGACVVTFTVGGLS-V 104 (431)
Q Consensus 32 ~l~~~L~~~GV~~vFgvpG~~~-~~l~~al~~~~~i~~v~~~hE~---~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~ 104 (431)
.+++.|.+.-=+.+|..-++.. ......+...+ -+|+....=. .+.-+|-|.+.... ..+|+ .|=|+.. .
T Consensus 391 ~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p-~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i--~GDG~f~m~ 467 (616)
T PRK07418 391 EVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGP-RRWISSAGLGTMGFGMPAAMGVKVALPDEEVICI--AGDASFLMN 467 (616)
T ss_pred HHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCC-CeEEcCCCccccccHHHHHHHHHHhCCCCcEEEE--EcchHhhhh
Confidence 3555555542356666554432 23333333222 2344332211 12223444444432 33333 4666554 3
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHH
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
+.-|..|.+.++|+++|.-.......- ........+.. ...|...+.+.+.-+..++++++++.+.+++|+
T Consensus 468 ~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~-~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~ 546 (616)
T PRK07418 468 IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEP-GMPDFVKLAEAFGVKGMVISERDQLKDAIAEAL 546 (616)
T ss_pred HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCC-CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH
Confidence 467889999999999998765432110 00000000100 113678889999888999999988877777666
Q ss_pred HHhhhCCCcEEEEEccC
Q 014091 177 STALKESKPVYISISCN 193 (431)
Q Consensus 177 ~~A~~~~GPv~l~iP~d 193 (431)
. ..||+.|++..|
T Consensus 547 ~----~~~p~lIeV~i~ 559 (616)
T PRK07418 547 A----HDGPVLIDVHVR 559 (616)
T ss_pred h----CCCCEEEEEEec
Confidence 3 568999999986
No 176
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=85.52 E-value=1.4 Score=42.16 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCCC---ccccccHHHHHHHHHHHhcc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNGP---SLGWVFMADFLSALAKKLRK 364 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~~---~~~~~d~~~~L~~L~~~l~~ 364 (431)
.+.+.+++||++|++|+++.-.....+... ..+.++|.||.++..+. .. .....++.+++. |.+.|+.
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~-~~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYIT-NRISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCC-CccccEEEECcHHHHHH-HHHHhcc
Confidence 455677899999999999975554444322 24778999999887543 11 111235666664 4455554
No 177
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=85.49 E-value=5.9 Score=39.73 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
-+++++.+++.|.+.+ +..+++|... ..+..-.+.+|++.+|...+.+-......+-.+.. .|.+ .. +... .
T Consensus 71 W~eAl~~ia~~l~~~~~~~i~~i~g~~~-t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~-~~~~-~~--~~sl-~ 144 (366)
T cd02774 71 WKTAFKFLNKFILLKKFSKLNFIIGSKI-DLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLD-LENY-LF--NNSL-K 144 (366)
T ss_pred HHHHHHHHHHHHhhcCcccEEEEECCCC-CHHHHHHHHHHHHHhCCCceecccccccccccccc-ccCC-cc--CCCH-H
Confidence 5678888888887643 4466666644 34566788999999998877654322111111111 1332 11 1122 3
Q ss_pred HhhhCCEEEEeCCccCccccc-cccc---C-CCCcceEEEccCc
Q 014091 299 IVESADAYVFVGPIFNDYSSV-GYSL---L-IKKEKAIIVQPHR 337 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~-~~~~---~-~~~~~~I~Id~d~ 337 (431)
-++++|+||++|+.+.+-... +... . ..+.|++.|++..
T Consensus 145 die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 145 NLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 367999999999887644332 2111 1 2357899998766
No 178
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.35 E-value=26 Score=37.29 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=69.8
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCc----eeeeecCC-CC-hHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNR----ILHHTIGL-PD-FTQ 147 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~----~~~~~~~~-~~-~~d 147 (431)
+.-+|-|++.... +.+|+ .|=|... .++.|..|...++|++++.-.......-+.. .-+...+. .. ..|
T Consensus 419 ~l~~aiGa~la~p~~~vv~i--~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d 496 (563)
T PRK08527 419 GLPAALGAKLAVPDKVVINF--TGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPD 496 (563)
T ss_pred hHHHHHHHHHhCCCCcEEEE--ecCchhcccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCC
Confidence 4445666666653 34444 3555543 3467889999999999988765432110000 00000000 00 136
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...+.+.+.-+.+++++++++.+.+++|+ ...||+.|++..|-
T Consensus 497 ~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lieV~v~~ 539 (563)
T PRK08527 497 FVKLAESFGGIGFRVTTKEEFDKALKEAL----ESDKVALIDVKIDR 539 (563)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 78889998888899999988777776665 35789999999874
No 179
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=85.25 E-value=15 Score=39.02 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=65.6
Q ss_pred hhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee--eecCCC--ChHHHHHHHhh
Q 014091 81 ADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH--HTIGLP--DFTQELRCFQA 154 (431)
Q Consensus 81 A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~--~~~~~~--~~~d~~~~~~~ 154 (431)
|-|.+...+ +.+|+ .|=|... ...-|..|...++|+++|.-....-........+ ...+.. ...|+..+.+.
T Consensus 426 aiGaala~~~~vv~i--~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 503 (554)
T TIGR03254 426 AIAAAVETGKPVVAL--EGDSAFGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKA 503 (554)
T ss_pred HHHHHhcCCCcEEEE--EcCchhcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHH
Confidence 334443334 44443 3555554 3467889999999999998765432111000000 000000 01367888888
Q ss_pred heeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 155 ITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 155 ~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+....+++++++++.+.+++|+ ...||+.|++..|
T Consensus 504 ~G~~~~~v~~~~el~~al~~a~----~~~~p~lIev~id 538 (554)
T TIGR03254 504 FGGVGYNVTTPDELKAALNEAL----ASGKPTLINAVID 538 (554)
T ss_pred CCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEEC
Confidence 8888999999988877776665 4568999999876
No 180
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=85.19 E-value=9.7 Score=34.25 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=60.0
Q ss_pred Hhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCC-cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhh
Q 014091 79 YAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (431)
Q Consensus 79 ~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~-Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (431)
-+|-|.+... + +.+|+ .|=|... .+..|..+...+. |+++|.-.......-... .... ...|...+.+.
T Consensus 55 paAiGaala~p~~~Vv~i--~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~---~~~~--~~~d~~~~A~a 127 (188)
T cd03371 55 QIALGIALARPDRKVVCI--DGDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ---PTVS--FDVSLPAIAKA 127 (188)
T ss_pred HHHHHHHHhCCCCcEEEE--eCCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc---CCCC--CCCCHHHHHHH
Confidence 3444544443 2 33443 4666653 4577888887776 677777654332111100 0111 11366777777
Q ss_pred he-eeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 155 IT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 155 ~~-k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+- ++..++++++++.+.+++|+ ..++|+.|++..|-
T Consensus 128 ~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIev~~~~ 164 (188)
T cd03371 128 CGYRAVYEVPSLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred cCCceEEecCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 74 44467877777766665554 45799999998764
No 181
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.16 E-value=1.5 Score=46.67 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHH
Q 014091 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSF 295 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a--~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~ 295 (431)
.-+++++.+++.|++. +..+++.++... .+..-...+|++.+|.+-+.... .-..-.......+|. +. ++..
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~--~~-~t~~ 157 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGV--GK-GTVS 157 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCC--CC-CCCC
Confidence 4678899999999876 344555444332 23444678899999987543221 100000011122332 11 1111
Q ss_pred HHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCce
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRV 338 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~ 338 (431)
.+-+++||+||++|+.........+..+ .++.|+|.||+...
T Consensus 158 -~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 158 -LEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred -HHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 2346789999999988754332222111 24789999998653
No 182
>PRK08617 acetolactate synthase; Reviewed
Probab=85.01 E-value=15 Score=38.91 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=67.4
Q ss_pred hhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeeeecCC-CChHHHHHHH
Q 014091 80 AADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIGL-PDFTQELRCF 152 (431)
Q Consensus 80 ~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~~~~~-~~~~d~~~~~ 152 (431)
+|-|.+... + +.+|+ .|=|+.. .++.|..|...++|+++|.-.......-+. .......+. ....|+..+.
T Consensus 422 aaiGa~la~p~~~vv~i--~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA 499 (552)
T PRK08617 422 WAIAAALVRPGKKVVSV--SGDGGFLFSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYA 499 (552)
T ss_pred HHHhhHhhcCCCcEEEE--EechHHhhhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHH
Confidence 444544443 3 33433 3555553 458899999999999988876543211000 000000110 0114678889
Q ss_pred hhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+.+....+++++++++.+.+++|+ ...||+.|++..|
T Consensus 500 ~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~liev~~~ 536 (552)
T PRK08617 500 ESFGAKGLRVTSPDELEPVLREAL----ATDGPVVIDIPVD 536 (552)
T ss_pred HHCCCeEEEECCHHHHHHHHHHHH----hCCCcEEEEEEec
Confidence 998888899999988877777766 4568999999876
No 183
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.01 E-value=7.3 Score=42.18 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCCchHHHHHhhhc-CCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSV----PGDFNLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgv----pG~~~~~l~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
.+..+.+.+.|.+.. -+.|+++ +|+.. ++.|.+ .++ ||+. ..-|++++.+|.|.|. .| ..+|.+ .
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~---~~~f~~~~p~-R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f 392 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGTG---LDKLQKRFPN-RVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-Y 392 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC---hHHHHHhCCC-cccccCccHHHHHHHHHHHHH-CCCEEEEEe-h
Confidence 355666666666542 3456655 33321 233433 233 5554 5789999999999998 67 555554 4
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A 175 (431)
.+=..-+...| .++-..+.||+++...... .+.+...|+ ...++.+++.+-.+.. ...++.++.. +
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~THq------~~~dia~lr~iPnl~V~~Psd~~e~~~----~ 460 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATHA------GAFDLAFLTNLPNMTVMAPRDEAELRH----M 460 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHH----H
Confidence 33233455555 3356789999988632221 122223332 2345788898866543 3444555544 4
Q ss_pred HHHhhh-CCCcEEEEEccCC
Q 014091 176 ISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~-~~GPv~l~iP~dv 194 (431)
++.|.. ..||+||-+|...
T Consensus 461 l~~a~~~~~~P~~ir~~r~~ 480 (641)
T PRK12571 461 LRTAAAHDDGPIAVRFPRGE 480 (641)
T ss_pred HHHHHhCCCCcEEEEEecCc
Confidence 555555 3799999999864
No 184
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=84.81 E-value=24 Score=37.54 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=73.7
Q ss_pred ceEEecCch---hHHHHhhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccC--------
Q 014091 66 LNLVGCCNE---LNAGYAADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG-------- 131 (431)
Q Consensus 66 i~~v~~~hE---~~A~~~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~-------- 131 (431)
-+|+.+..= ..+.-+|-|.+... + +.+|++ |=|.. -.++.|..|...+.|+++|.-.......-
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~--GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~ 487 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFS--GDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFY 487 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEE--ccchhhccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhc
Confidence 356654321 22444666666554 2 444443 44443 34578889999999999998765422210
Q ss_pred CCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 132 TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 132 ~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.....+..+. ...|+..+.+.+--+..++++++++.+.+++|+ ...+|+.|++..|-
T Consensus 488 ~~~~~~~~~~--~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~~~~ 544 (564)
T PRK08155 488 GQRVFAATYP--GKINFMQIAAGFGLETCDLNNEADPQAALQEAI----NRPGPALIHVRIDA 544 (564)
T ss_pred CCCeeeccCC--CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0011111111 114678888888888889999888766666655 45799999999874
No 185
>PRK05858 hypothetical protein; Provisional
Probab=84.80 E-value=3.1 Score=44.02 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=59.8
Q ss_pred CcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecC-----CC-ChHHHHHHHhhheeeEEEcCCcchHHH
Q 014091 98 TVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIG-----LP-DFTQELRCFQAITCSQAVVNNLGDAHE 170 (431)
Q Consensus 98 GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~-----~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~ 170 (431)
|=|.. -.+.-|..|...++|+++|.-.......-+. ..+..++ .. .-.|+..+.+.+-.+..++++++++.+
T Consensus 433 GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~-~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~ 511 (542)
T PRK05858 433 GDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKH-PMEALYGYDVAADLRPGTRYDEVVRALGGHGELVTVPAELGP 511 (542)
T ss_pred cCchhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHH-HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHH
Confidence 55444 3457788888999999998876532211000 0000000 00 113678888888888999999998888
Q ss_pred HHHHHHHHhhhCCCcEEEEEccC
Q 014091 171 LIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 171 ~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+++|++ ..||+.|++..|
T Consensus 512 al~~a~~----~~~p~lIev~~~ 530 (542)
T PRK05858 512 ALERAFA----SGVPYLVNVLTD 530 (542)
T ss_pred HHHHHHh----CCCcEEEEEEEC
Confidence 7777764 569999999986
No 186
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.62 E-value=26 Score=37.38 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=71.5
Q ss_pred HHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC--------CceeeeecCCCChH
Q 014091 78 GYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (431)
Q Consensus 78 ~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (431)
.-+|-|.+... + +.+|++ |=|... .+..|..|...++|+++|.-.......-+ +......+. ...
T Consensus 429 lpaAiGa~la~p~r~Vv~i~--GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~--~~~ 504 (574)
T PRK06466 429 LPAAMGVKLAFPDQDVACVT--GEGSIQMNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYME--SLP 504 (574)
T ss_pred HHHHHHHHHhCCCCeEEEEE--cchhhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCC--CCC
Confidence 34455656554 3 444443 555553 45889999999999999998765321100 000000000 124
Q ss_pred HHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
|+..+.+.+-.+..++++++++.+.+++|+.. ..||+.|++..|-
T Consensus 505 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 505 DFVKLAEAYGHVGIRITDLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 77889999988999999999988888777742 2689999988764
No 187
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=84.62 E-value=11 Score=40.12 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=75.0
Q ss_pred ceEEecCchh---HHHHhhhhhhhhcC-ccEEEEeCCcchHHH-HHHHHHhhhcCCcEEEEeCCCCCcccC------CCc
Q 014091 66 LNLVGCCNEL---NAGYAADGYARSRG-VGACVVTFTVGGLSV-LNAIAGAYSENLPVICIVGGPNSNDYG------TNR 134 (431)
Q Consensus 66 i~~v~~~hE~---~A~~~A~gyar~tg-~gv~~~t~GpG~~n~-~~gl~~A~~~~~Pvl~I~g~~~~~~~~------~~~ 134 (431)
.+++..+.-. .+.-+|-|++...+ +.+|+ .|=|.... ++.+..|...++|+++|.-........ +..
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i--~GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVAL--IGDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEE--echHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 5566544322 24456667766644 54444 36665543 578888999999999998765432110 000
Q ss_pred -eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 135 -ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 135 -~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
...+.++.....|...+.+.+.-..+++++++++.+.+++|+ ..+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----PTPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence 000011111123677888888777889999888777666664 4579999999876
No 188
>PRK05261 putative phosphoketolase; Provisional
Probab=84.47 E-value=21 Score=39.27 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=71.0
Q ss_pred CceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhh---------------hcCCcEEEEeCCCCCc
Q 014091 65 ELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAY---------------SENLPVICIVGGPNSN 128 (431)
Q Consensus 65 ~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~---------------~~~~Pvl~I~g~~~~~ 128 (431)
+=|+|....|..++.++.||+. +| .+.+. |+- .....+-.+.+++ ..++. +++|...=
T Consensus 449 ~Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~-- 522 (785)
T PRK05261 449 DGRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVW-- 522 (785)
T ss_pred CCCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeeccee--
Confidence 4578889999999999999999 78 55544 443 4444445666655 34444 33343321
Q ss_pred ccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 129 DYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
.++.+.. ++|++.+.+++...++=.-..++..+...+ ..|++.|... .+|..|.+.+.
T Consensus 523 ~qghNG~---THQ~Pg~ie~l~~~r~~~~rV~rPaDaNe~----laa~~~al~s~~~p~~IvlsRQ 581 (785)
T PRK05261 523 RQDHNGF---SHQDPGFIDHVANKKPDVIRVYLPPDANTL----LAVADHCLRSRNYINVIVAGKQ 581 (785)
T ss_pred ecCCCCC---CCCCchHHHHHHhcCCCcceEEeCCCHHHH----HHHHHHHHHhCCCCEEEEEeCC
Confidence 1233323 345566788887777744455555554444 4455666554 48999888753
No 189
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=84.42 E-value=6.8 Score=41.83 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=62.0
Q ss_pred CCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC-------CCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchH
Q 014091 97 FTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG-------TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA 168 (431)
Q Consensus 97 ~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~ 168 (431)
.|=|+.. .+..|..+...++|+++|.-.......- .++..+-.+ ...|...+.+.+--...++++++++
T Consensus 433 ~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~---~~~df~~iA~a~G~~~~~v~~~~el 509 (575)
T TIGR02720 433 AGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDF---NDADFAKIAEGVGAVGFRVNKIEQL 509 (575)
T ss_pred EcccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccC---CCCCHHHHHHHCCCEEEEeCCHHHH
Confidence 3555554 4568889999999999997764432210 000000001 1236788888888788899999888
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 169 HELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 169 ~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.+++|+. ....||+.|++..|-
T Consensus 510 ~~al~~a~~--~~~~~p~liev~i~~ 533 (575)
T TIGR02720 510 PAVFEQAKA--IKQGKPVLIDAKITG 533 (575)
T ss_pred HHHHHHHHh--hCCCCcEEEEEEeCC
Confidence 888877776 244799999998764
No 190
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.31 E-value=21 Score=34.38 Aligned_cols=159 Identities=15% Similarity=0.078 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH-
Q 014091 28 TLGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV- 104 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~--~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~- 104 (431)
.+-..|.+.|.+.|+. ..+-+.|......+....+ ...+.+.|..+. -+|-|-..+..---+++..|=|..-.
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG~al-p~AiGaklA~pd~~VVai~GDG~~~~i 93 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHGRAI-PAATAVKATNPELTVIAEGGDGDMYAE 93 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCcccccHH-HHHHHHHHHCCCCcEEEEECchHHhhC
Confidence 3556788888888764 3444444444333322222 223333444333 34444444432112233346666543
Q ss_pred -HHHHHHhhhcCCcEEEEeCCCCCcccCC--C----ceeee----ecCCC-ChHHHHHHHhhhee-eEEE--cCCcchHH
Q 014091 105 -LNAIAGAYSENLPVICIVGGPNSNDYGT--N----RILHH----TIGLP-DFTQELRCFQAITC-SQAV--VNNLGDAH 169 (431)
Q Consensus 105 -~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--~----~~~~~----~~~~~-~~~d~~~~~~~~~k-~~~~--v~~~~~~~ 169 (431)
+..|..|...++||++|.-+......-+ . +.-+. ..+.. .-.|...+.+.+-- +..+ +.+++++.
T Consensus 94 G~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~ 173 (280)
T PRK11869 94 GGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETK 173 (280)
T ss_pred cHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHH
Confidence 7999999999999999986543211100 0 00000 01111 11366777777643 4333 55666654
Q ss_pred HHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 170 ELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 170 ~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+ +++.|...+||++|++-.--
T Consensus 174 ~----~i~~Al~~~Gp~lIeV~~pC 194 (280)
T PRK11869 174 E----ILKEAIKHKGLAIVDIFQPC 194 (280)
T ss_pred H----HHHHHHhCCCCEEEEEECCC
Confidence 4 55555566899999987543
No 191
>PRK08322 acetolactate synthase; Reviewed
Probab=84.28 E-value=16 Score=38.64 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=67.4
Q ss_pred Hhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeeeecC-CCChHHHHHH
Q 014091 79 YAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIG-LPDFTQELRC 151 (431)
Q Consensus 79 ~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~~~~-~~~~~d~~~~ 151 (431)
-+|-|++... + +.+|++ |=|... .+..|..|...++|+++|.-.......-+. .......+ ...-.|+..+
T Consensus 413 paaiGa~la~p~~~vv~i~--GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~l 490 (547)
T PRK08322 413 PSAIAAKLVHPDRKVLAVC--GDGGFMMNSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKY 490 (547)
T ss_pred HHHHHHHHhCCCCcEEEEE--cchhHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHH
Confidence 3455555544 2 334433 555443 356788899999999999876543221000 00000011 0011367888
Q ss_pred HhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.+.-+..++++++++.+.+++|+ ...||+.|+|..|-
T Consensus 491 A~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIev~v~~ 529 (547)
T PRK08322 491 AESYGAKGYRVESADDLLPTLEEAL----AQPGVHVIDCPVDY 529 (547)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 9998888899999888777766665 45799999999763
No 192
>PLN02573 pyruvate decarboxylase
Probab=84.27 E-value=5.8 Score=42.38 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=67.3
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhhe
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (431)
+|-|.+.... +.||+ .|=|+.. .+.-|..|.+.++|+++|+-.......-+. ...+......-.|+..+.+.+-
T Consensus 436 aaiGa~lA~p~r~vv~i--~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~-~~~~~~~~~~~~d~~~lA~a~G 512 (578)
T PLN02573 436 ATLGYAQAAPDKRVIAC--IGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVE-IHDGPYNVIKNWNYTGLVDAIH 512 (578)
T ss_pred HHHHHHHhCCCCceEEE--EeccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEe-ecccCccccCCCCHHHHHHHhc
Confidence 4445554442 34444 3666665 448899999999999999876543221110 0000011101135677787773
Q ss_pred -----eeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 157 -----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 157 -----k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+..++++++++.+.+++|+.. ...||+.|++..|
T Consensus 513 ~~~g~~~~~~V~~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 513 NGEGKCWTAKVRTEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CcCCceeEEEecCHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 6778999988887777777642 2368999999986
No 193
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=84.16 E-value=5 Score=42.92 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=69.6
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCCh
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDF 145 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~ 145 (431)
+.-+|-|.+... + +.||++ |=|.. -.++.|..|...++|+++|.-.......- .+...+-.+. .-
T Consensus 440 glp~aiGa~la~p~r~vv~i~--GDG~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~--~~ 515 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFA--GDGAWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELD--NN 515 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEE--cCchHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCC--CC
Confidence 344555555554 3 455554 44444 34688999999999999998654332110 0000000011 11
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.|...+.+.+.-+..++++++++...+++|+... ...||+.|+|+.|
T Consensus 516 ~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 516 VSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred CCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 3678888888777889999988877777766542 2248999999987
No 194
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=84.00 E-value=8.3 Score=34.85 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=64.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHh--hh-----cCCCceEEecCchhHHH-----------Hhhhhhhhhc
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNAG-----------YAADGYARSR 88 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l~-----~~~~i~~v~~~hE~~A~-----------~~A~gyar~t 88 (431)
...++.|.+.|.+.|-=++||+-++......-+ |. ...++..+.. .+.+.. .++.-.+...
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 456788888888889999999988877543333 21 1245655444 343211 1111111111
Q ss_pred Cc-cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 89 GV-GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 89 g~-gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.. -++++.|..|.+ +.+.++..|+..++|+|.||+.....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 23 466667777766 78899999999999999999975443
No 195
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=83.95 E-value=26 Score=37.72 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=88.5
Q ss_pred HHHHHHHHHc-CCCEEEecCCCchHH-HHHhhhcCCCceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchHH
Q 014091 31 RHLARRLVEI-GAKDVFSVPGDFNLT-LLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLS 103 (431)
Q Consensus 31 ~~l~~~L~~~-GV~~vFgvpG~~~~~-l~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n 103 (431)
..+++.|.+. .=+.++..-++.... ....+.-...-+|+.... -..+.-+|-|.+.... +.+|+ .|=|...
T Consensus 401 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i--~GDG~f~ 478 (612)
T PRK07789 401 QYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI--DGDGCFQ 478 (612)
T ss_pred HHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE--Ecchhhh
Confidence 3455555553 234555544433322 222232112235553322 1123445555555542 33343 4555553
Q ss_pred -HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCC--ChHHHHHHHhhheeeEEEcCCcchHHHHH
Q 014091 104 -VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLP--DFTQELRCFQAITCSQAVVNNLGDAHELI 172 (431)
Q Consensus 104 -~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~--~~~d~~~~~~~~~k~~~~v~~~~~~~~~i 172 (431)
....|..|...++|+++|.-.......- ........+... ...|...+.+.+..+..++++++++.+.+
T Consensus 479 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al 558 (612)
T PRK07789 479 MTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVI 558 (612)
T ss_pred ccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 4578999999999999998765432110 000000001000 01378889999988899999998887777
Q ss_pred HHHHHHhhhCCCcEEEEEccCC
Q 014091 173 DTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 173 ~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++|+.. ..||+.|+|..|-
T Consensus 559 ~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 559 EKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred HHHHhc---CCCcEEEEEEECC
Confidence 777653 2689999999874
No 196
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.95 E-value=2 Score=45.10 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHHhCC-CeEecCCCcccCCCC--CCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGY-PIAIMPSGKGLVPEH--HPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~~~~-Pv~tt~~gkg~~~~~--hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++. ++..++.|.+... .....+.+|++..+. +.+.........+.. +...+|. +..
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~--~~~ 147 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTN-EENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGS--GAM 147 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc-HHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCC--CCC
Confidence 567888888888753 4566666655432 234567889887765 333321111100000 0111121 111
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceee
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~ 340 (431)
+. . ..-++++|+||++|+.+.+.....+.. ..++.++|.||+.....
T Consensus 148 ~~-~-~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~t 198 (512)
T cd02753 148 TN-S-IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTEL 198 (512)
T ss_pred CC-C-HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccc
Confidence 11 1 234679999999999875433211111 12467999999876644
No 197
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=83.92 E-value=20 Score=38.02 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=69.6
Q ss_pred HHHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCChH
Q 014091 77 AGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFT 146 (431)
Q Consensus 77 A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~~ 146 (431)
+.-+|-|++.... .-|+ +..|=|... ..+.|..|...++|+++|.-.......- .+...+..+. ...
T Consensus 417 ~l~aaiGa~la~~~~~vv-~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~--~~~ 493 (558)
T TIGR00118 417 GLPAAIGAKVAKPESTVI-CITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMG--SLP 493 (558)
T ss_pred hhhHHHhhhhhCCCCcEE-EEEcchHHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCC--CCC
Confidence 4446667666653 3233 334655553 4568889999999999999876532210 0000110010 114
Q ss_pred HHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
|...+.+.+.-+..++++++++.+.+++|+ ...||+.|++..|-
T Consensus 494 d~~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~~~~ 537 (558)
T TIGR00118 494 DFVKLAEAYGIKGIRIEKPEELDEKLKEAL----SSNEPVLLDVVVDK 537 (558)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 678888888878889998877766665554 44799999999874
No 198
>PRK06154 hypothetical protein; Provisional
Probab=83.49 E-value=27 Score=37.21 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=70.4
Q ss_pred HhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCce-e--eeecCCCChHHHHHHH
Q 014091 79 YAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-L--HHTIGLPDFTQELRCF 152 (431)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~-~--~~~~~~~~~~d~~~~~ 152 (431)
-+|-|.+.... +.+|+ .|=|+.. .+..|..|.+.++|+++|+-.......-+... . ....+...-.|+..+.
T Consensus 438 paaiGa~la~p~r~Vv~i--~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA 515 (565)
T PRK06154 438 GLAMGAKLARPDALVINL--WGDAAFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIA 515 (565)
T ss_pred HHHHHHHHhCCCCcEEEE--EcchHHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHH
Confidence 34444444442 34444 3666554 34789999999999999987654322111000 0 0000000013778899
Q ss_pred hhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+-....++++++++.+.+++|+... ...+|+.|++..|-
T Consensus 516 ~a~G~~g~~V~~~~el~~al~~a~~~~-~~~~p~lIev~v~~ 556 (565)
T PRK06154 516 RALGGYGERVEDPEMLVPALLRALRKV-KEGTPALLEVITSE 556 (565)
T ss_pred HHCCCeEEEECCHHHHHHHHHHHHhhc-cCCCeEEEEEEeCh
Confidence 999889999999999988888877643 13579999998764
No 199
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.43 E-value=10 Score=40.51 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=85.7
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCC----c-hHHHHHhhhcCCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSVPGD----F-NLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgvpG~----~-~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
.+..+.+.+.|.+.. -+.++++.++ . ...|.+.. ++ |++. ..-|++.+.+|.|.|. .| ..+|.+ .
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~-R~i~~GIaE~~mvg~A~GlA~-~G~~p~~~~-f 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PD-RYFDVGIAEQHAVTFAAGLAT-EGLKPVVAI-Y 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hh-hccCCChHHHHHHHHHHHHHH-CCCeeEEEe-e
Confidence 556677777776652 3445554222 2 22232322 22 4443 5789999999999999 56 455543 3
Q ss_pred CcchHHHHHHHHH-hhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl~~-A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A 175 (431)
.+=..-+..-+.+ +-..+.||+++....... +.+...|+ ...+..+++.+-.+.. ...++.++ ..+
T Consensus 353 ~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~--g~dG~tH~------~~edia~lr~iP~l~V~~Psd~~e~----~~~ 420 (580)
T PRK05444 353 STFLQRAYDQVIHDVALQNLPVTFAIDRAGLV--GADGPTHQ------GAFDLSYLRCIPNMVIMAPSDENEL----RQM 420 (580)
T ss_pred HHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcC--CCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHH----HHH
Confidence 3222223332333 445789999997543322 22223332 2345788998876543 44445444 455
Q ss_pred HHHhhhC-CCcEEEEEccCC
Q 014091 176 ISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv 194 (431)
++.|... ++|+||.+|...
T Consensus 421 l~~a~~~~~~P~~ir~~r~~ 440 (580)
T PRK05444 421 LYTALAYDDGPIAIRYPRGN 440 (580)
T ss_pred HHHHHhCCCCcEEEEecCCC
Confidence 5555544 799999999875
No 200
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=83.24 E-value=3.4 Score=44.01 Aligned_cols=108 Identities=22% Similarity=0.205 Sum_probs=68.9
Q ss_pred HhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC--------CceeeeecCCCChHH
Q 014091 79 YAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFTQ 147 (431)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~~~~~~~~~~~~d 147 (431)
-+|-|.+.... +.+|++ |=|... ..+.|..|...++|+++|.-.......-+ +......+. ...|
T Consensus 428 paAiGa~la~p~~~vv~i~--GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~--~~~d 503 (572)
T PRK06456 428 PAAMGAKLARPDKVVVDLD--GDGSFLMTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYG--PSPD 503 (572)
T ss_pred HHHHHHHHhCCCCeEEEEE--ccchHhcchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCC--CCCC
Confidence 35556555553 344443 555443 45888999999999999987654321100 000000010 1147
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+..+.+.+..+..++++++++.+.+++|+ ...||..|+|..|-
T Consensus 504 ~~~~A~a~G~~~~~v~~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 504 FVKLAEAFGALGFNVTTYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHHCCCeeEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 78899999888899999888777666654 45799999999874
No 201
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=83.02 E-value=30 Score=36.67 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=75.9
Q ss_pred ceEEecCchhH---HHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---c-e
Q 014091 66 LNLVGCCNELN---AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---R-I 135 (431)
Q Consensus 66 i~~v~~~hE~~---A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~-~ 135 (431)
-+|+....=.+ +.-+|-|.+.... +.+|++ |=|.. -.++.|..|...++|+++|.-.......-+. . .
T Consensus 392 ~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~--GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~ 469 (548)
T PRK08978 392 ENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVS--GDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFF 469 (548)
T ss_pred CeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEE--ccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHh
Confidence 45554433222 3455666665543 444443 55544 3568899999999999999876543211000 0 0
Q ss_pred eeeecCC--CChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 136 LHHTIGL--PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 136 ~~~~~~~--~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
-.+..+. ..-.|...+.+.+--+.+++++++++.+.+++|+. ..||..|+|..|-
T Consensus 470 ~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 470 DERYSETDLSDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred CCcceecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0000110 01147788899998889999999888777777753 4689999999874
No 202
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.86 E-value=19 Score=38.46 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=67.0
Q ss_pred HHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeee-----ecCCCC--hHH
Q 014091 78 GYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-----TIGLPD--FTQ 147 (431)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~-----~~~~~~--~~d 147 (431)
.-+|-|.+.... +.+|+ .|=|... ...-|.+|...++|++++.-.......-+ ..|+ .....+ -.|
T Consensus 428 lp~aiGa~lA~p~~~vv~i--~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~--~~q~~~~~~~~~~~~~~~~d 503 (570)
T PRK06725 428 FPAAIGAQLAKEEELVICI--AGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVR--QWQEMFYENRLSESKIGSPD 503 (570)
T ss_pred hhHHHhhHhhcCCCeEEEE--EecchhhccHHHHHHHHHhCCCeEEEEEECCccHHHH--HHHHHhcCCccccCcCCCCC
Confidence 334455544432 44444 3555553 34778899999999999987654321100 0000 000001 136
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...+.+.+-.+..++++++++.+.+++|+ ...||+.|+++.|-
T Consensus 504 ~~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~id~ 546 (570)
T PRK06725 504 FVKVAEAYGVKGLRATNSTEAKQVMLEAF----AHEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 78889999888899998877766665554 45799999999873
No 203
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=82.83 E-value=9.9 Score=37.78 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=71.1
Q ss_pred EecCchhHHHHhhhhhhhhc-CccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCC-C
Q 014091 69 VGCCNELNAGYAADGYARSR-GVGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL-P 143 (431)
Q Consensus 69 v~~~hE~~A~~~A~gyar~t-g~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~-~ 143 (431)
+..-+=.-|+.+|-+--... +..|+++..|=|++| .--++-=|-.-+.|+|+++-...-...-.. ..+. .
T Consensus 137 iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~-----~~q~~~ 211 (358)
T COG1071 137 IVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPR-----SRQTAA 211 (358)
T ss_pred eecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecch-----hhcccc
Confidence 33444445666665554444 245899999999986 556666677789999999865432211000 1010 0
Q ss_pred ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
+...+....-.+.-....=.++..+-+...+|...|+.+.||+.|+.=
T Consensus 212 ~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 212 EIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred hhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 111222222233444444455667888889999999988999999864
No 204
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=82.64 E-value=37 Score=36.21 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=69.1
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCCh
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDF 145 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~ 145 (431)
+.-+|-|.+..+ + +.+|+ .|=|+.. ....|..|...++|+++|.-.......- .....+..+ ...
T Consensus 429 glpaAiGaala~p~~~vv~i--~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~--~~~ 504 (571)
T PRK07710 429 GLPAAIGAQLAKPDETVVAI--VGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLL--SCQ 504 (571)
T ss_pred hHHHHHHHHHhCCCCcEEEE--EcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccC--CCC
Confidence 445566666655 3 34444 3555543 4467889999999999998765432110 000000000 011
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.|...+.+.+--+..++++++++.+.+++|+ ...||+.|+++.|-
T Consensus 505 ~d~~~~A~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 505 PDFVKLAEAYGIKGVRIDDELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred CCHHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 3677888888888899999877766665554 45799999999874
No 205
>PRK07064 hypothetical protein; Provisional
Probab=82.62 E-value=7 Score=41.31 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=59.0
Q ss_pred CCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---c--eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHH
Q 014091 97 FTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---R--ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE 170 (431)
Q Consensus 97 ~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~--~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~ 170 (431)
.|=|.. -.++.|..|...++|+++|.-.......-+. . ..+....+....|...+.+.+.-...++++++++.+
T Consensus 430 ~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~ 509 (544)
T PRK07064 430 VGDGGLMLNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTSADDFEA 509 (544)
T ss_pred EcchHhhhhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHH
Confidence 355544 3457888899999999999765432211000 0 000000001113678888888877889999988877
Q ss_pred HHHHHHHHhhhCCCcEEEEEccC
Q 014091 171 LIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 171 ~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+++|+ ...||+.|++..|
T Consensus 510 al~~a~----~~~~p~lIeV~~~ 528 (544)
T PRK07064 510 VLREAL----AKEGPVLVEVDML 528 (544)
T ss_pred HHHHHH----cCCCCEEEEEEcc
Confidence 777665 3569999999986
No 206
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=82.33 E-value=36 Score=33.53 Aligned_cols=151 Identities=19% Similarity=0.103 Sum_probs=83.1
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCc-----hHHHHHhhhcC-CCceEEe-cCchhHHHHhhhhhhhhcCccEEEEeC
Q 014091 27 GTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIAE-PELNLVG-CCNELNAGYAADGYARSRGVGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV--~~vFgvpG~~-----~~~l~~al~~~-~~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~ 97 (431)
++..+.+.+.|.+..- +.++.+-.+- ....++.|.+. ++-||+. .-.|++.+.+|.|.|..-...+|. +.
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~-~~ 82 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE-GM 82 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEE-ee
Confidence 4555666666555532 4555554442 13445666542 4447776 579999999999999854344442 22
Q ss_pred Ccch-----HHHHHHHHHhhh-------cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCC
Q 014091 98 TVGG-----LSVLNAIAGAYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNN 164 (431)
Q Consensus 98 GpG~-----~n~~~gl~~A~~-------~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~ 164 (431)
.+-. -...+.+ |+. -++||++....-.. .+.+ ..|+ +. ...+++.+-.+... ..+
T Consensus 83 ~~~f~~ra~dQi~~~~--a~~~~~~gg~~~~~vv~~~~g~~~--~~~G-~tHs-----~~--~ea~~~~iPgl~V~~Psd 150 (327)
T CHL00144 83 NMGFLLLAFNQISNNA--GMLHYTSGGNFTIPIVIRGPGGVG--RQLG-AEHS-----QR--LESYFQSVPGLQIVACST 150 (327)
T ss_pred hhhHHHHHHHHHHHHH--HHHhhccCCCccCCEEEEecCCCC--CCCC-cccc-----cc--HHHHHhcCCCCEEEEeCC
Confidence 2222 1233333 334 38899987542211 1111 1231 11 24888888776544 345
Q ss_pred cchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 165 LGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.++...++. |...++||||--|..+
T Consensus 151 ~~d~~~~l~~----a~~~~~Pv~ire~~~l 176 (327)
T CHL00144 151 PYNAKGLLKS----AIRSNNPVIFFEHVLL 176 (327)
T ss_pred HHHHHHHHHH----HHhCCCcEEEEEcHHh
Confidence 5555555544 4446799999744433
No 207
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.84 E-value=33 Score=36.55 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=68.8
Q ss_pred HhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCChHH
Q 014091 79 YAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFTQ 147 (431)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~~d 147 (431)
-+|-|.+.... ..+|+ .|=|... ...-|..|...++|++++.-.......- .+...+..+. ...|
T Consensus 428 paaiGa~la~p~~~vv~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~--~~~d 503 (572)
T PRK08979 428 PAAMGVKFAMPDETVVCV--TGDGSIQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMD--SVPD 503 (572)
T ss_pred hHHHhhhhhCCCCeEEEE--EcchHhhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCC--CCCC
Confidence 34444444432 33333 4666554 3478999999999999998765522110 0000000000 1137
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+..+.+.+-.+..++++++++.+.+++|+.. ..||+.|+|..|-
T Consensus 504 ~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 504 FAKIAEAYGHVGIRISDPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 7889999988899999998887777777641 3689999999874
No 208
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=81.53 E-value=1.9 Score=39.96 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCCC-ccccccHHHHHHHH
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSAL 358 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~~-~~~~~d~~~~L~~L 358 (431)
+.+.++++|++|++|+++.-........ ..++.++|.||.++..+.... .....|+.++|.+|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 4456689999999998876433222222 135778999999987654111 12223788888776
No 209
>PRK07524 hypothetical protein; Provisional
Probab=81.44 E-value=23 Score=37.35 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=67.8
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee----eecC-CCChHHH
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH----HTIG-LPDFTQE 148 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~----~~~~-~~~~~d~ 148 (431)
+.-+|-|.+... + +.+|++ |=|... .+.-|..|...++|++++.-.......-+. .++ +..+ +....|.
T Consensus 412 ~lp~aiGa~lA~p~~~vv~i~--GDG~f~~~~~el~ta~~~~lpi~~vV~NN~~~g~i~~-~~~~~~~~~~~~~~~~~d~ 488 (535)
T PRK07524 412 GLPAAIGAALGAPERPVVCLV--GDGGLQFTLPELASAVEADLPLIVLLWNNDGYGEIRR-YMVARDIEPVGVDPYTPDF 488 (535)
T ss_pred hHHHHHHHHHhCCCCcEEEEE--cchHHhhhHHHHHHHHHhCCCeEEEEEECCchHHHHH-HHHHhcCCccccCCCCCCH
Confidence 334556666554 3 455544 555443 346688899999999998876532210000 000 0111 0011367
Q ss_pred HHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
..+.+.+--+..++++++++.+.+++| ...+||+.|++..|-+
T Consensus 489 ~~~A~a~G~~~~~v~~~~el~~al~~a----~~~~~p~liev~~~~~ 531 (535)
T PRK07524 489 IALARAFGCAAERVADLEQLQAALRAA----FARPGPTLIEVDQACW 531 (535)
T ss_pred HHHHHHCCCcEEEeCCHHHHHHHHHHH----HhCCCCEEEEEECCcc
Confidence 888888887888998877766655555 4568999999998754
No 210
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=81.31 E-value=4.8 Score=42.72 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=59.8
Q ss_pred cEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC--------ceeeeecCCCChHH-HHHHHhhheeeEE
Q 014091 91 GACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN--------RILHHTIGLPDFTQ-ELRCFQAITCSQA 160 (431)
Q Consensus 91 gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--------~~~~~~~~~~~~~d-~~~~~~~~~k~~~ 160 (431)
.+|++ |=|... .+.-|..|.+.++|+++|.-....-..-+. +.-+-.+. .. +..+.+.+.-..+
T Consensus 429 Vv~i~--GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~----~~~f~klAea~G~~g~ 502 (550)
T COG0028 429 VVAIA--GDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLG----NPDFVKLAEAYGAKGI 502 (550)
T ss_pred EEEEE--cccHHhccHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecC----CccHHHHHHHcCCeeE
Confidence 44444 433332 378899999999999999876543221110 00000111 12 6788888888889
Q ss_pred EcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 161 VVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 161 ~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++++++++.+ |++.|...++|+.|+++.|-
T Consensus 503 ~v~~~~el~~----al~~al~~~~p~lidv~id~ 532 (550)
T COG0028 503 RVETPEELEE----ALEEALASDGPVLIDVVVDP 532 (550)
T ss_pred EeCCHHHHHH----HHHHHHhCCCCEEEEEEecC
Confidence 9998877655 55555566799999999885
No 211
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=81.24 E-value=34 Score=36.33 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCEEEecCCCchHH-HHHhhhcCCCceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchHH-H
Q 014091 32 HLARRLVEIGAKDVFSVPGDFNLT-LLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLS-V 104 (431)
Q Consensus 32 ~l~~~L~~~GV~~vFgvpG~~~~~-l~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~ 104 (431)
.+++.|.+.-=+.++..-++...- ....+.-...-+|+.... =..+.-+|-|.+..+. +.+|++ |=|... .
T Consensus 370 ~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~--GDG~f~m~ 447 (561)
T PRK06048 370 YVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIA--GDGSFQMN 447 (561)
T ss_pred HHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEE--eCchhhcc
Confidence 355555543224544444333222 222332112245664432 1234455666666553 444443 555443 4
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCC--------CceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHH
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
...|..|...++|+++|.-.......-+ +......+. ...|...+.+.+--+..++++++++.+.+++|+
T Consensus 448 ~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~--~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~ 525 (561)
T PRK06048 448 SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIK--GSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAV 525 (561)
T ss_pred HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCC--CCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH
Confidence 5788999999999999987654321100 000000000 113678888888888899999988877777776
Q ss_pred HHhhhCCCcEEEEEccCC
Q 014091 177 STALKESKPVYISISCNL 194 (431)
Q Consensus 177 ~~A~~~~GPv~l~iP~dv 194 (431)
...||+.|++..|-
T Consensus 526 ----~~~~p~liev~~~~ 539 (561)
T PRK06048 526 ----ASDRPVVIDFIVEC 539 (561)
T ss_pred ----hCCCCEEEEEEecC
Confidence 35699999998763
No 212
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=80.74 E-value=15 Score=39.63 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CC-CchHHHHHhhhcCCCceEE-ecCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSV----PG-DFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgv----pG-~~~~~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
.+..+.+.+.|.+.. =+.|+.+ ++ .....|.+.+ |+ |++ ...-|++++.+|.|.|. .| ..+|.+ .
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~-R~~d~GIaEq~~vg~AaGlA~-~G~~Pvv~~-~ 383 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PD-RYFDVAIAEQHAVTFAAGMAI-EGYKPFVAI-Y 383 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---cc-ccccCCccHHHHHHHHHHHHH-CCCEEEEEe-c
Confidence 456677776666653 2456653 32 2223344443 22 334 36789999999999997 57 555544 4
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A 175 (431)
.+=+.-+.--| .++-..+.||+++....... +.+...|+. ...+.+++.+-.+. ....++.++...+
T Consensus 384 a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~dG~tH~~------~~dia~lr~iPgl~V~~Psd~~e~~~~l--- 452 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV--GADGETHQG------AFDISYLRCIPNMVIMAPSDENELRQML--- 452 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC--CCCCccccc------chHHHHHhcCCCcEEEeeCCHHHHHHHH---
Confidence 32222233333 23445789999986544332 222233432 23368888886654 3444555555544
Q ss_pred HHHhhhC-CCcEEEEEccCC
Q 014091 176 ISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv 194 (431)
+.|... +||+||-+|...
T Consensus 453 -~~a~~~~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 453 -YTGYHYDDGPIAVRYPRGN 471 (617)
T ss_pred -HHHHhCCCCCEEEEEccCC
Confidence 444444 599999999864
No 213
>PRK13936 phosphoheptose isomerase; Provisional
Probab=80.64 E-value=13 Score=33.63 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhc-----CCCceEEecCchhHHH--Hhh-hhh--------hhhcC
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNAG--YAA-DGY--------ARSRG 89 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~-----~~~i~~v~~~hE~~A~--~~A-~gy--------ar~tg 89 (431)
..++.+++.|.+.+.=++||+-++.... +...|.. ..+++.+..-.+.... ..- .+| +....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4678899999999999999998886543 3333431 2456665542222221 100 111 11122
Q ss_pred c-cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 014091 90 V-GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 90 ~-gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
+ =+++.-|..|.+ +.+..+..|+..++|+|.||+....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 2 344445555555 6888999999999999999997543
No 214
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=80.58 E-value=2.9 Score=46.10 Aligned_cols=113 Identities=21% Similarity=0.159 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCC--CCCcceeecCCCCCHH
Q 014091 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEH--HPHFIGTYWGAVSSSF 295 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a--~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~--hp~~~G~~~G~~~~~~ 295 (431)
.-+++++.+++.|++. +...++.++... ....-...+|+..+|.+-+.+...-+--+.. ....+|. + .++..
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s-~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~--~-~~t~~ 192 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTS-NEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGI--G-KGSVN 192 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCC--C-CCCCC
Confidence 3577888999988875 455566654432 2344567889998887754322100000000 0112232 1 11111
Q ss_pred HHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCc
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHR 337 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~ 337 (431)
. +-+++||+||++|+...+.....+..+ .++.|+|.||+..
T Consensus 193 ~-~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 193 L-EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred H-hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 2 346799999999988754332222211 2478999999854
No 215
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=80.54 E-value=7.1 Score=43.29 Aligned_cols=115 Identities=15% Similarity=0.022 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCC
Q 014091 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~ 293 (431)
.-+++++.+++.|++. +...++.|.... ......+.+|++.+|.+.+.......... .-....|. +..+.
T Consensus 288 SWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t-~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~-~~~~~~g~--~~~~~ 363 (776)
T PRK09129 288 DWETALEYVAEGLKGIIEDHGADQIGALASPHST-LEELYLLQKLARGLGSGNIDHRLRQQDFR-DDAAAPGA--PWLGM 363 (776)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCccccccCCcccc-chhhhhcc--cccCC
Confidence 3567888888888753 345555555442 23456788999999987654321110000 00001121 11222
Q ss_pred HHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceee
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~ 340 (431)
. ..-++++|+||++|+.+.+.....+..+ .++.|+|.||+.....
T Consensus 364 -~-~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 364 -P-IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred -C-HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 1 2346799999999998754432222111 2467899999865543
No 216
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=80.35 E-value=48 Score=35.46 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=69.6
Q ss_pred HHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCChH
Q 014091 78 GYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDFT 146 (431)
Q Consensus 78 ~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~~ 146 (431)
.-+|-|.+.... +.+|+ .|=|... ...-|..|.+.++|+++|.-.......- ..+.. ...... ..
T Consensus 443 lpaaiGa~lA~p~r~Vv~i--~GDGsf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~-~~~~~~-~~ 518 (587)
T PRK06965 443 LPYAMGIKMAHPDDDVVCI--TGEGSIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYS-HSYMDA-LP 518 (587)
T ss_pred HHHHHHHHHhCCCCcEEEE--EcchhhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCcc-ccCCCC-CC
Confidence 344555555542 34443 3555554 3578999999999999999765532110 00000 000000 13
Q ss_pred HHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
|...+.+.+..+.+++++++++.+.+++|+.. ..+|+.|+|..|-
T Consensus 519 d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 519 DFVKLAEAYGHVGMRIEKTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 67888899988899999998887777776652 3589999998873
No 217
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=80.26 E-value=28 Score=37.26 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=68.1
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC--cee--eeecCC-C-ChHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN--RIL--HHTIGL-P-DFTQ 147 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--~~~--~~~~~~-~-~~~d 147 (431)
+.-+|-|.+.... +.+|+ .|=|... ..+.|..|...++|+++|.-.......-+. ... ....+. . ...|
T Consensus 424 ~lpaaiGa~la~p~~~Vv~i--~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d 501 (586)
T PRK06276 424 GFPAAIGAKVAKPDANVIAI--TGDGGFLMNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPD 501 (586)
T ss_pred chhHHHhhhhhcCCCcEEEE--EcchHhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCC
Confidence 3345566555543 33333 3555543 457899999999999999887653211000 000 000000 0 1246
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
...+.+.+.-+..++++++++.+.+++|+ ...||..|++..|
T Consensus 502 ~~~la~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~ 543 (586)
T PRK06276 502 FVKLAESYGVKADRVEKPDEIKEALKEAI----KSGEPYLLDIIID 543 (586)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 78888888888899999888776666665 4578999999766
No 218
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=79.58 E-value=1.6 Score=40.51 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceee
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~ 340 (431)
.+.+.+++||++|++|+++.-.....+... ..+.++|.||.++...
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~ 211 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPF 211 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCC
Confidence 445667889999999999875544333322 2467899999987644
No 219
>PRK09939 putative oxidoreductase; Provisional
Probab=79.38 E-value=2 Score=47.33 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHhcCCC---EEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCH
Q 014091 220 GLEAAVEATADFLNKAVKP---VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSS 294 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rp---vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~ 294 (431)
.-+++++.+++.|++.+.| .++.++.. ..++.-.+.+|+..+|.+-+.... .-..-.......+|. | .++.
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~-snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~--g-~~t~ 201 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRT-SNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGV--G-KGTV 201 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCc-hHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCC--C-CCCC
Confidence 4678899999988876555 44444333 223444678888888876553211 100000000111232 1 1111
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHR 337 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~ 337 (431)
.. +-+++||+||++|+...+.....+.. ..++.|+|.||+-.
T Consensus 202 ~l-~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 202 LL-EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred CH-HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 22 23689999999998875432211111 12477999999854
No 220
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=78.72 E-value=6 Score=43.18 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a--~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
.-+++++.+++.|++. ++..+++|..... +..-.+.+|++.+|.+.+.+...-..++ +...+.| .++. ..
T Consensus 288 SWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~-E~~~~lkkl~~~lGs~nid~~~~~~~~~---~~~~~~~--~~~~-si- 359 (687)
T PRK09130 288 SWDEAFAAIAAKIKGTPGEKIAAIAGDLADV-ESMFALKDLMQKLGSSNLDCRQDGAKLD---PSLRASY--LFNT-TI- 359 (687)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCCCCH-HHHHHHHHHHHHcCCCccccccchhhhh---hhhhccC--CCCC-CH-
Confidence 3578899999999875 4567777776643 3456889999999988776542111111 1111111 1111 22
Q ss_pred HHhhhCCEEEEeCCccCcccccccc----cCCCC-cceEEEccCc
Q 014091 298 EIVESADAYVFVGPIFNDYSSVGYS----LLIKK-EKAIIVQPHR 337 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~~~~~~----~~~~~-~~~I~Id~d~ 337 (431)
+-++++|+||++|+.+.+....-+. .+.++ .++|.||+..
T Consensus 360 ~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 360 AGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 2368999999999987543321111 11234 4899998764
No 221
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=78.41 E-value=1.9 Score=41.13 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeec
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~ 341 (431)
.+.+.+++||++|+||+++.-.....+.. ...+.++|.||.++..+.
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d 245 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRAD 245 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCC
Confidence 45567789999999999997554333322 124788999999987554
No 222
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=78.26 E-value=1.4 Score=40.32 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeec
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~ 341 (431)
.+.+.+++||++|++|+++.-....++.. ...+.++|.||.++....
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d 196 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKD 196 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCC
Confidence 45566789999999999987554333332 124678999999887543
No 223
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=78.16 E-value=13 Score=39.19 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=65.1
Q ss_pred Hhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC--ce--eeeecCC-CChHHHHH
Q 014091 79 YAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN--RI--LHHTIGL-PDFTQELR 150 (431)
Q Consensus 79 ~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--~~--~~~~~~~-~~~~d~~~ 150 (431)
-+|-|.+... + +.+|++ |=|... .+..|..|...++|++++.-.......-+. .. .....+. ..-.|...
T Consensus 414 p~aiGa~la~p~~~vv~i~--GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (530)
T PRK07092 414 PAAVGVALAQPGRRVIGLI--GDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVA 491 (530)
T ss_pred HHHHHHHHhCCCCeEEEEE--eCchHhhhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHH
Confidence 3555665554 2 444443 555443 468899999999999999866542211000 00 0000000 01136788
Q ss_pred HHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+.+.+.....++++++++.+.+++|+ ...||+.|++..|
T Consensus 492 ~a~~~G~~~~~v~~~~~l~~al~~a~----~~~~p~liev~~d 530 (530)
T PRK07092 492 LARGYGCEAVRVSDAAELADALARAL----AADGPVLVEVEVA 530 (530)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEcC
Confidence 88888877888988776655555554 4679999998765
No 224
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=78.00 E-value=1.7 Score=45.57 Aligned_cols=116 Identities=15% Similarity=0.008 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhcC------CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCC
Q 014091 220 GLEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~------rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~ 293 (431)
.-+++++.+++.|++.+ ...++.+.+.........+.+|+..+|.+-+......+..-.-+....|. ...
T Consensus 74 sWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~----~~~ 149 (501)
T cd02766 74 SWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA----SLG 149 (501)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC----CCC
Confidence 35678888888887643 33444444432211222236788878877542111000000001111222 111
Q ss_pred HHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceee
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~ 340 (431)
...+-++++|+||++|+...+.....+..+ .++.|+|.||+.....
T Consensus 150 -~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 150 -NDPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred -CCHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 122456899999999988765433222211 2478999999877654
No 225
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=77.98 E-value=2.8 Score=47.68 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCC-----------------CEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCC--CCC
Q 014091 221 LEAAVEATADFLNKAVK-----------------PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HHP 281 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~r-----------------pvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~--~hp 281 (431)
-+++++.+++.|++.+. -+.+.+++....+..-.+.+|+..+|.+-+.....-+-.+. ...
T Consensus 125 WDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~ 204 (1009)
T TIGR01553 125 WDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTVASLA 204 (1009)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHHHHHH
Confidence 46677777777765321 13333433322233445788999898765433211110000 011
Q ss_pred CcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceee
Q 014091 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 282 ~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~ 340 (431)
..+|. +.... . ..-+++||+||++|+...+.....+..+ .++.|+|.||+.....
T Consensus 205 ~~~G~--~~~~~-~-~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~t 263 (1009)
T TIGR01553 205 PSFGR--GAMTN-N-WVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRT 263 (1009)
T ss_pred HhhcC--CCCCC-C-HHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCch
Confidence 12232 11111 1 2336899999999998764433222211 2467999999876543
No 226
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=77.79 E-value=17 Score=38.34 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=58.5
Q ss_pred eCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee---eecCCCChHHHHHHHhhhee----eEEEcCCcch
Q 014091 96 TFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH---HTIGLPDFTQELRCFQAITC----SQAVVNNLGD 167 (431)
Q Consensus 96 t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~k----~~~~v~~~~~ 167 (431)
..|=|... .+.-|..|...++|+++|.-.......-+ ..| +........|+..+.+.+-. +..+++++++
T Consensus 428 i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~--~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~e 505 (539)
T TIGR03393 428 LIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVER--AIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQ 505 (539)
T ss_pred EEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEE--eecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHH
Confidence 34666654 45788899999999999987654321100 000 00000111356677777654 4789999888
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 168 AHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 168 ~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+.+.+++|+ ...||+.|++..|
T Consensus 506 l~~al~~a~----~~~~p~liev~i~ 527 (539)
T TIGR03393 506 LADVLEKVA----AHERLSLIEVVLP 527 (539)
T ss_pred HHHHHHHHh----ccCCeEEEEEEcC
Confidence 877766664 4579999999976
No 227
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=77.69 E-value=19 Score=38.48 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=84.1
Q ss_pred ccHHHHHHHHHHHcCCC--EEEecC----CCchHHHHHhhhc-CCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIGAK--DVFSVP----GDFNLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~--~vFgvp----G~~~~~l~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
.+..+.+.+.|.+..-+ .++.+- |..- + +.|.+ .| =||+. ---|++++.+|.|.|. .| ..+|+. .
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP-~R~id~GIaEq~~v~~AaGlA~-~G~~Pvv~~-f 351 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYP-DQYVDVGIAEQESVAFASGIAA-NGARPVIFV-N 351 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhcc-ccccCCCchHHHHHHHHHHHHH-CcCeEEEEe-e
Confidence 45667776666665332 455542 2221 2 33332 22 25444 5789999999999998 57 566543 2
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A 175 (431)
.+=+.-++-=| .++-..+.||+++.....-. + +...|+ ....+.+++.+-.... ...++.++ ..+
T Consensus 352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~--~-dG~TH~------~~~Dia~lr~iPnl~V~~P~d~~e~----~~~ 418 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSIS--G-NDVTHL------GIFDIPMISNIPNLVYLAPTTKEEL----IAM 418 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--C-CCcccc------ccHHHHHHhcCCCCEEEecCCHHHH----HHH
Confidence 22111222211 12345789999997643322 2 223332 2234688998876654 34444444 445
Q ss_pred HHHhhhC-CCcEEEEEccCC
Q 014091 176 ISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv 194 (431)
++.|... .||+||-+|...
T Consensus 419 l~~a~~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 419 LEWALTQHEHPVAIRVPEHG 438 (581)
T ss_pred HHHHHhCCCCcEEEEEcCCc
Confidence 5555554 699999999875
No 228
>PRK08266 hypothetical protein; Provisional
Probab=77.61 E-value=15 Score=38.77 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=66.5
Q ss_pred hhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCC----CceeeeecCC-CChHHHHHH
Q 014091 80 AADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGT----NRILHHTIGL-PDFTQELRC 151 (431)
Q Consensus 80 ~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~----~~~~~~~~~~-~~~~d~~~~ 151 (431)
+|-|.+... + +.+|++ |=|.. -....|..|...++|+++|.-.......-+ ...-.+..+. ....|...+
T Consensus 410 ~aiGa~la~p~~~vv~v~--GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~l 487 (542)
T PRK08266 410 TALGAKVANPDRPVVSIT--GDGGFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKL 487 (542)
T ss_pred HHHHHHHhCCCCcEEEEE--cchhhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHH
Confidence 455655544 3 444443 44444 346889999999999999986654321100 0000001110 011367889
Q ss_pred HhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.+.....++++++++.+.+++|+ ...||+.|++..|-
T Consensus 488 a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~i~~ 526 (542)
T PRK08266 488 AESFGVAAFRVDSPEELRAALEAAL----AHGGPVLIEVPVPR 526 (542)
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 9999888899999877766665554 45789999998764
No 229
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=77.28 E-value=11 Score=40.01 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC----CceeeeecCC-CChHHHHHHHhhheeeEEEcCCcchHHH
Q 014091 97 FTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT----NRILHHTIGL-PDFTQELRCFQAITCSQAVVNNLGDAHE 170 (431)
Q Consensus 97 ~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~----~~~~~~~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~ 170 (431)
.|=|... ..+.|..|...++|+++|.-.......-+ ........+. ....|...+.+.+--+..++++++++.+
T Consensus 440 ~GDGsf~~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 519 (557)
T PRK08199 440 AGDGCFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVERTEDFAP 519 (557)
T ss_pred EcchHhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHH
Confidence 3555543 45788889999999999987754321000 0000000000 0113678888888888889999887766
Q ss_pred HHHHHHHHhhhCCCcEEEEEccC
Q 014091 171 LIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 171 ~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+++|+ ..+||+.|++..|
T Consensus 520 al~~a~----~~~gp~li~v~~~ 538 (557)
T PRK08199 520 AFERAL----ASGKPALIEIRID 538 (557)
T ss_pred HHHHHH----hCCCCEEEEEEeC
Confidence 666655 4579999999976
No 230
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=76.93 E-value=6.9 Score=41.67 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=66.4
Q ss_pred HhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCcee-e--eecCC--CChHHHHHH
Q 014091 79 YAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL-H--HTIGL--PDFTQELRC 151 (431)
Q Consensus 79 ~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~-~--~~~~~--~~~~d~~~~ 151 (431)
-+|-|.+...+ +.+|+ .|=|... .+.-|..|...++|+++|.-....-........ + ...+. ....|...+
T Consensus 431 paaiGa~la~~~~vv~i--~GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 508 (569)
T PRK09259 431 GYAIAAAVETGKPVVAI--EGDSAFGFSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKM 508 (569)
T ss_pred HHHHHHHhcCCCcEEEE--ecCccccccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHH
Confidence 34444444444 43333 3555553 346788888999999999876542100000000 0 00000 011367788
Q ss_pred HhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.+.-...++++++++.+.+++|+ ...||+.|++..|-
T Consensus 509 A~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIev~id~ 547 (569)
T PRK09259 509 MEAFGGVGYNVTTPDELRHALTEAI----ASGKPTLINVVIDP 547 (569)
T ss_pred HHHCCCeEEEECCHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence 8888888899999988877777665 35799999999874
No 231
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=76.92 E-value=17 Score=35.17 Aligned_cols=161 Identities=17% Similarity=0.058 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch--HH
Q 014091 28 TLGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG--LS 103 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~--~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~--~n 103 (431)
.+-..|.+.|.+.|++ ...-+.|......+-... ....+...| ..+.-+|-|...+..---+++.+|=|. .-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~---~~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLPGYI---NTYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccCccc---cccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 3566777888777753 222223333222111111 011121222 334445556555543112233356663 34
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---c-------eeeeecCCCC-hHHHHHHHhhhee-eEE--EcCCcchHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTN---R-------ILHHTIGLPD-FTQELRCFQAITC-SQA--VVNNLGDAH 169 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~-------~~~~~~~~~~-~~d~~~~~~~~~k-~~~--~v~~~~~~~ 169 (431)
.++.+..|.+.++|+++|.-.......-++ + ......+..+ -.|...+...+-. +.. .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 567899999999999999865432111000 0 0000011111 1356666665533 222 344555555
Q ss_pred HHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 170 ELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 170 ~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
+. ++.|...+||++|++..+-..
T Consensus 183 ~a----l~~Al~~~Gp~lIev~~~C~~ 205 (286)
T PRK11867 183 EL----IKAAINHKGFSFVEILQPCPT 205 (286)
T ss_pred HH----HHHHHhCCCCEEEEEeCCCCC
Confidence 54 555555789999999977644
No 232
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=76.73 E-value=23 Score=38.56 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCCchH-HHHHhhhcCCCceEE-ecCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIGA--KDVFSV----PGDFNL-TLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV--~~vFgv----pG~~~~-~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
.+.++++.+.|.+..- +.|+.+ +|+.-+ .|.+.+ | =||+ ...-|++++.+|.|.|. .| ..+|.+ .
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~f---P-~R~fdvGIAEq~~vg~AaGLA~-~G~kPvv~~-f 429 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRF---P-TRCFDVGIAEQHAVTFAAGLAC-EGLKPFCAI-Y 429 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHc---C-ccccccCcCHHHHHHHHHHHHH-CCCeEEEEe-c
Confidence 4677777777776543 455555 333322 233333 2 2333 36789999999999999 56 555544 3
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~~~~~i~~A 175 (431)
.+=..-+.--| .++-..+.||+++...... .+.+...|+ ......+++.+-.+... ..+++++.. +
T Consensus 430 s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~--vg~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~----~ 497 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC------GAFDVTYMACLPNMVVMAPSDEAELFH----M 497 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCc--ccCCCCccc------ccHHHHHHhcCCCCEEEeeCCHHHHHH----H
Confidence 32222333322 4445688999988543322 222223332 22346778887665543 344445544 4
Q ss_pred HHHhhhC-CCcEEEEEccCC
Q 014091 176 ISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv 194 (431)
++.|... .|||||.+|...
T Consensus 498 l~~al~~~~gPv~IR~pr~~ 517 (677)
T PLN02582 498 VATAAAIDDRPSCFRYPRGN 517 (677)
T ss_pred HHHHHhCCCCCEEEEEecCC
Confidence 4555543 599999999874
No 233
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=76.68 E-value=12 Score=31.73 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhc---CCCce-EEecCchhH--HHHhh----hhhhhh-----cC
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIA---EPELN-LVGCCNELN--AGYAA----DGYARS-----RG 89 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~---~~~i~-~v~~~hE~~--A~~~A----~gyar~-----tg 89 (431)
...++.+++.+++-|.=++||.-|+... ++..-+.. ...+. ...+.+... +.... .+|++. ..
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 4578999999999999999999777544 33333322 11222 133344432 22111 345442 13
Q ss_pred -cc-EEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeC
Q 014091 90 -VG-ACVVTFTVGG-LSVLNAIAGAYSENLPVICIVG 123 (431)
Q Consensus 90 -~g-v~~~t~GpG~-~n~~~gl~~A~~~~~Pvl~I~g 123 (431)
++ ++++.|..|- .|.+-++..|+.-+.++|.|||
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 43 4455555554 4899999999999999999986
No 234
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=76.13 E-value=2 Score=39.91 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCceeec
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVG 341 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~~~ 341 (431)
+.+.++++|++|++|+++............ ++.++|.||.++..+.
T Consensus 165 ~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 165 AIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLD 211 (225)
T ss_pred HHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCC
Confidence 455678899999999987543322222222 3788999999887554
No 235
>PRK13937 phosphoheptose isomerase; Provisional
Probab=75.94 E-value=20 Score=32.14 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHH--Hhhh-----cCCCceEEecC-chhHHHHhhh--hhh---------hh
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLL--DHLI-----AEPELNLVGCC-NELNAGYAAD--GYA---------RS 87 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~--~al~-----~~~~i~~v~~~-hE~~A~~~A~--gya---------r~ 87 (431)
-..++.+++.|++.+-=++||.-++...... ..+. ...++..+... +.......+. +|. ..
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 3578899999999999999999776653322 1121 12456666532 2222111111 111 12
Q ss_pred cCccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 88 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 88 tg~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+.--++++-|..|.+ +.+..+..|+..++|+|.||+.....
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 223566666777766 68889999999999999999975443
No 236
>PRK13761 hypothetical protein; Provisional
Probab=75.73 E-value=7 Score=35.92 Aligned_cols=50 Identities=24% Similarity=0.212 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
....+.+.++.+|--|++|||=+-+.+.. =+.+++.+||+.+++++=...
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~AA-L~p~eiveLa~~~~A~iEVNL 101 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTAA-LVPEEIVELAEALNAKLEVNL 101 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHHh-hChHHHHHHHHHhCCCEEEEe
Confidence 35668888999999999999998877643 367999999999999986543
No 237
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=75.73 E-value=56 Score=33.89 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCC-----c----hHHHHHhhhcCCCceEEe-cCchhHHHHhhhhhhhhcCccEEE
Q 014091 27 GTLGRHLARRLVEIGA--KDVFSVPGD-----F----NLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRGVGACV 94 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV--~~vFgvpG~-----~----~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~ 94 (431)
++..+.+.+.|.+..- +.||.+-.+ . ...|.+.+. .=|||. ...|++.+.+|.|.|......+|-
T Consensus 142 ~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg---p~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 142 MTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG---ARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred hHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC---ccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 4666777766666642 345555421 1 223454442 125555 578999999999999953344442
Q ss_pred EeCCcc-hHHHHHHHHH-hh--------hcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cC
Q 014091 95 VTFTVG-GLSVLNAIAG-AY--------SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VN 163 (431)
Q Consensus 95 ~t~GpG-~~n~~~gl~~-A~--------~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~ 163 (431)
. ...- ...++--|.+ +- ..+.||++....-+... .+ .||. .+...+++.+-..... ..
T Consensus 219 ~-~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G--~hhs------~~d~a~~~~iPgl~V~~P~ 287 (464)
T PRK11892 219 F-MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VA--AQHS------QDYAAWYSHIPGLKVVAPY 287 (464)
T ss_pred E-ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CC--Cccc------cCHHHHHhhCCCCEEEEeC
Confidence 2 1111 1222222321 22 56799999864433321 11 2442 2346889888655543 34
Q ss_pred CcchHHHHHHHHHHHhhhCCCcEEEE
Q 014091 164 NLGDAHELIDTAISTALKESKPVYIS 189 (431)
Q Consensus 164 ~~~~~~~~i~~A~~~A~~~~GPv~l~ 189 (431)
++.++... ++.|...++|||+.
T Consensus 288 d~~d~~~l----l~~ai~~~~Pv~il 309 (464)
T PRK11892 288 SAADAKGL----LKAAIRDPNPVIFL 309 (464)
T ss_pred CHHHHHHH----HHHHhhCCCcEEEE
Confidence 44555444 45555567999984
No 238
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.64 E-value=2.7 Score=44.67 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHH-HhCCCeEecCCCcccCCCCC---CCcceeecC
Q 014091 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEHH---PHFIGTYWG 289 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~gkg~~~~~h---p~~~G~~~G 289 (431)
.-+++++.+++.|++. +...++.|+.. .......+.+|+. .+|.+.+.+...-. ....+ ....|. +
T Consensus 71 SWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~l~~~~~gs~~~~~~~~~c-~~~~~~~~~~~~G~--~ 146 (565)
T cd02754 71 SWDEALDLIAERFKAIQAEYGPDSVAFYGSGQL-LTEEYYAANKLAKGGLGTNNIDTNSRLC-MASAVAGYKRSFGA--D 146 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-cHHHHHHHHHHHHHhCCCCcccCCCccc-chHHHHHHHhhccC--C
Confidence 3577888888888753 33445444332 2223345667776 36766553321100 00000 111121 0
Q ss_pred CCCCHHHHHHhhhCCEEEEeCCccCcccccccccC----CC--CcceEEEccCceee
Q 014091 290 AVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IK--KEKAIIVQPHRVTV 340 (431)
Q Consensus 290 ~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~--~~~~I~Id~d~~~~ 340 (431)
... ....-++++|+||++|+.+.+.....+..+ .. +.|+|.||+.....
T Consensus 147 ~~~--~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~t 201 (565)
T cd02754 147 GPP--GSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRT 201 (565)
T ss_pred CCC--CCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcc
Confidence 111 112345799999999998754432222111 13 78999999876654
No 239
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=75.41 E-value=50 Score=30.84 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=60.0
Q ss_pred EEEeCCcchH--HHHHHHHHhhhcCCcEEEEeCCCCCcccC--CCce----eee----ecCC------CChHHHHHHHhh
Q 014091 93 CVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSNDYG--TNRI----LHH----TIGL------PDFTQELRCFQA 154 (431)
Q Consensus 93 ~~~t~GpG~~--n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--~~~~----~~~----~~~~------~~~~d~~~~~~~ 154 (431)
|++..|=|.+ -.+..|..|...++|+++|.-+......- .... .+. .++. ..-.|...+.+.
T Consensus 83 VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a 162 (235)
T cd03376 83 VVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAA 162 (235)
T ss_pred EEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHH
Confidence 3334566763 34688999999999999998775543210 0000 000 0000 011367778887
Q ss_pred he-ee--EEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 155 IT-CS--QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 155 ~~-k~--~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
+- ++ ..++.+++++.+.+++|+ ..+||+.|++..+-+.
T Consensus 163 ~G~~~~~~~~v~~~~el~~al~~a~----~~~gP~lIev~~~C~~ 203 (235)
T cd03376 163 HNIPYVATASVAYPEDLYKKVKKAL----SIEGPAYIHILSPCPT 203 (235)
T ss_pred cCCcEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEECCCCC
Confidence 74 33 246777777766655555 4579999999877643
No 240
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=75.18 E-value=41 Score=32.43 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHHHcC---CCEEEecCCCchH----HHHHhhhcCCCceEE-ecCchhHHHHhhhhhhhhcCccEEEEeC
Q 014091 26 VGTLGRHLARRLVEIG---AKDVFSVPGDFNL----TLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRGVGACVVTF 97 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~G---V~~vFgvpG~~~~----~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg~gv~~~t~ 97 (431)
..+..+.+.++|.+.| -+-|.-....... .|...+.+ |++ ..--||+.+.+|.|.|.......+. |.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPd----R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-tf 80 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPD----RFFNVGIAEQDMVGTAAGLALAGKKPFVS-TF 80 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCch----hheecchHHHHHHHHHHHHHhcCCCceee-ch
Confidence 3456666666666664 3333333222211 23333322 233 3578999999999999875543332 33
Q ss_pred CcchH-HHHHHHHHhh-hcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHH
Q 014091 98 TVGGL-SVLNAIAGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~-n~~~gl~~A~-~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A 175 (431)
++=++ -+.==|.++. .++.||=++.....-..-..+ .- +|......++|-+.+....... +.+ ..+++
T Consensus 81 a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG-~s------Hq~~EDiaimR~lpn~~V~~P~-D~v--~~~~i 150 (312)
T COG3958 81 AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDG-SS------HQALEDIAIMRGLPNMTVIAPA-DAV--ETRAI 150 (312)
T ss_pred HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCC-cc------chhHHHHHHHhcCCCceEEccC-cHH--HHHHH
Confidence 32222 1111222222 367777777665544322122 12 3344558899988887765542 333 66778
Q ss_pred HHHhhhCCCcEEEEEcc-CC
Q 014091 176 ISTALKESKPVYISISC-NL 194 (431)
Q Consensus 176 ~~~A~~~~GPv~l~iP~-dv 194 (431)
+..+...+||+|+-+.. ++
T Consensus 151 ~~~~~~~~GP~Y~Rl~R~~~ 170 (312)
T COG3958 151 LDQIADYKGPVYMRLGRGKV 170 (312)
T ss_pred HHHHHhcCCCEEEEecCCCC
Confidence 88888889999999999 44
No 241
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=74.46 E-value=28 Score=30.02 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHh--h----h-cCCCceEEecC---chhHHHH----hhhhhhh---hc-C-cc
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH--L----I-AEPELNLVGCC---NELNAGY----AADGYAR---SR-G-VG 91 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l----~-~~~~i~~v~~~---hE~~A~~----~A~gyar---~t-g-~g 91 (431)
+.+++.|.+.+.=++||+-++......-+ + . ...++..+..- |+..+.. +.+-|.+ .. + --
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 56889999999999999988775443322 1 1 12345444322 2222221 1111222 11 3 35
Q ss_pred EEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 92 ACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 92 v~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
++++-|..|.+ +.+..+..|+..++|+|.||+.....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 77777888877 67788889999999999999865443
No 242
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=73.89 E-value=24 Score=35.30 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=61.3
Q ss_pred cCchhHHHHhhhhhhhhcCccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHH
Q 014091 71 CCNELNAGYAADGYARSRGVGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (431)
Q Consensus 71 ~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d 147 (431)
.-+=..|+.+|.+.-+.....++++..|=|++| ..-++.-|..-+.|+|+|+-..... ...- .. .+.. ..+
T Consensus 141 G~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~--~~--~~~~-~~~ 214 (362)
T PLN02269 141 GAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTA--EW--RAAK-SPA 214 (362)
T ss_pred hccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCc--hh--hhcc-chH
Confidence 333344555555544332256777778887765 4455666777899999998653321 1100 00 0000 001
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
...-...+--....=.+++.+-+.+.+|++.+.. .||+.|++-
T Consensus 215 ~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~ 257 (362)
T PLN02269 215 YYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMD 257 (362)
T ss_pred HHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 1110011111223334556677777888888878 899999874
No 243
>PRK07586 hypothetical protein; Validated
Probab=73.64 E-value=10 Score=39.79 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred hhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC------c-eeee------ecCCC
Q 014091 80 AADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN------R-ILHH------TIGLP 143 (431)
Q Consensus 80 ~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~------~-~~~~------~~~~~ 143 (431)
+|-|.+.... +.+|+ .|=|... .+.-|..|...++|+++|.-.......-+. . ..+. .+..+
T Consensus 393 aaiGa~lA~p~r~Vv~i--~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (514)
T PRK07586 393 LATGAAVACPDRKVLAL--QGDGSAMYTIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDP 470 (514)
T ss_pred HHHHHHHhCCCCeEEEE--EechHHHhHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCC
Confidence 3445554432 33443 4666553 468889999999999888865442211000 0 0000 00000
Q ss_pred ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
-.|+..+.+.+.....++++++++.+.+++|+ ...||+.|++.
T Consensus 471 -~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~----~~~~p~liev~ 513 (514)
T PRK07586 471 -DLDWVALAEGMGVPARRVTTAEEFADALAAAL----AEPGPHLIEAV 513 (514)
T ss_pred -CCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHH----cCCCCEEEEEE
Confidence 13678888988888899999888877666665 44699999985
No 244
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=73.11 E-value=97 Score=30.92 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=80.1
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCCCc-----hHHHHHhhhcCC-CceEEe-cCchhHHHHhhhhhhhhcCccEEEEe
Q 014091 26 VGTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRGVGACVVT 96 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV--~~vFgvpG~~-----~~~l~~al~~~~-~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t 96 (431)
.++..+++.+.|.+..- +.++.+..+- .+...+.|.+.- .=||+. .--|++++.+|.|.|......+|...
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 35677777777766632 4566665432 122222222211 245665 57899999999999996444443221
Q ss_pred CCcch-HHHHHHHHH-hhhc--------CCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCc
Q 014091 97 FTVGG-LSVLNAIAG-AYSE--------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNL 165 (431)
Q Consensus 97 ~GpG~-~n~~~gl~~-A~~~--------~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~ 165 (431)
.+-. ..+.--|.+ +-.. +.||+++... ... .+.+ ..|+ ++ + ..+++.+-.+... ..++
T Consensus 106 -~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~-~g~G-~tH~-----~~-~-~a~lr~iPnl~V~~Pad~ 174 (356)
T PLN02683 106 -TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA-AGVG-AQHS-----QC-F-AAWYSSVPGLKVLAPYSS 174 (356)
T ss_pred -hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC-CCCC-Cccc-----cC-H-HHHHhcCCCCEEEEeCCH
Confidence 1211 123332221 1222 3899988643 221 1211 1221 22 3 5889988665543 3444
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 166 GDAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
+++. .+++.|...+||+||-.+.
T Consensus 175 ~e~~----~~l~~a~~~~gPv~ir~~~ 197 (356)
T PLN02683 175 EDAR----GLLKAAIRDPDPVVFLENE 197 (356)
T ss_pred HHHH----HHHHHHHhCCCcEEEEEeh
Confidence 4554 4455555567999997643
No 245
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=72.45 E-value=30 Score=31.26 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=48.9
Q ss_pred ccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEc-CCc
Q 014091 90 VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV-NNL 165 (431)
Q Consensus 90 ~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v-~~~ 165 (431)
...+++..|=|.++ ..-++..|.....|+++|.-+......+ .+.+....++.+ .|.... -+.
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~------------~~~~~~~~~~a~-G~~~~~~vdG 163 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISP------------NVGTPGNLFEEL-GFRYIGPVDG 163 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCC------------CCCCHHHHHHhc-CCCccceECC
Confidence 34455556777764 4466776777799999988654332110 011344555542 333221 133
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 166 GDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
.+ .+.+.+|++.|...++|+.|.+-
T Consensus 164 ~d-~~~l~~a~~~a~~~~~P~~I~~~ 188 (195)
T cd02007 164 HN-IEALIKVLKEVKDLKGPVLLHVV 188 (195)
T ss_pred CC-HHHHHHHHHHHHhCCCCEEEEEE
Confidence 33 23456667766666799998764
No 246
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=71.91 E-value=1.2e+02 Score=32.22 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=66.6
Q ss_pred hhhhhhhhc--C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ceeeeecCC-CChHHHHHH
Q 014091 80 AADGYARSR--G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RILHHTIGL-PDFTQELRC 151 (431)
Q Consensus 80 ~A~gyar~t--g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~~~~~~~~-~~~~d~~~~ 151 (431)
+|-|.+... + +.+|++ |=|.. =.+..|..|...++|+++|.-.......-+. ...+...+. ....|+..+
T Consensus 404 aaiGa~la~p~~~~Vv~i~--GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~l 481 (549)
T PRK06457 404 GSVGASFAVENKRQVISFV--GDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKI 481 (549)
T ss_pred HHHHHHhcCCCCCeEEEEE--cccHHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHH
Confidence 445555443 3 444443 44444 3467888899999999998876543221000 000000110 001367888
Q ss_pred HhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+.+--...++++++++...+++|+ ...||+.|+|-.|-
T Consensus 482 A~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~~ 520 (549)
T PRK06457 482 AESIGFKGFRLEEPKEAEEIIEEFL----NTKGPAVLDAIVDP 520 (549)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 8888878889999988877777765 35789999998773
No 247
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=71.38 E-value=27 Score=33.78 Aligned_cols=155 Identities=17% Similarity=0.071 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCCchHHHHHhhhcCCC-c--eEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH
Q 014091 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPE-L--NLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~--~vFgvpG~~~~~l~~al~~~~~-i--~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (431)
+-..|.+.|.+.|++ ...-+.|..... +.+. + ..+.+.| ..+.-+|.|-..+.- .-| ++..|=|..
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~------~~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~V-Vai~GDG~f 83 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSA------KTPHYVNVNGFHGLH-GRALPVATGIKLANPHLKV-IVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCccc------ccCCeEecCCccccc-ccHHHHHHHHHHHCCCCcE-EEEeCchHH
Confidence 446777888888773 222222222221 1111 1 1122223 445566677666653 322 333466664
Q ss_pred --HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCc---e------ee-eecCC---CChHHHHHHHhhheeeEEE-cCCcc
Q 014091 103 --SVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---I------LH-HTIGL---PDFTQELRCFQAITCSQAV-VNNLG 166 (431)
Q Consensus 103 --n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~---~------~~-~~~~~---~~~~d~~~~~~~~~k~~~~-v~~~~ 166 (431)
-.++.+..|.+.++|+++|.-+......-++. . .. ...+. +--.+.+.+...+...+.. ..+++
T Consensus 84 ~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 84 YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHH
Confidence 34577999999999999998653221110000 0 00 00010 0012466777776544443 46666
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 167 DAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
++.+.| +.|...+||++|++..--.
T Consensus 164 eL~~ai----~~Al~~~GpslIeV~~pC~ 188 (287)
T TIGR02177 164 HLKEII----KEAINHKGYALVDILQPCV 188 (287)
T ss_pred HHHHHH----HHHHhCCCCEEEEEeCCCC
Confidence 665554 4455678999999986543
No 248
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=70.75 E-value=82 Score=33.76 Aligned_cols=109 Identities=10% Similarity=0.002 Sum_probs=67.1
Q ss_pred hhhhhhhhc-C-ccEEEEeCCcchHHHH--HHHHHhhhc-----CCcEEEEeCCCCCcccCC-------CceeeeecCCC
Q 014091 80 AADGYARSR-G-VGACVVTFTVGGLSVL--NAIAGAYSE-----NLPVICIVGGPNSNDYGT-------NRILHHTIGLP 143 (431)
Q Consensus 80 ~A~gyar~t-g-~gv~~~t~GpG~~n~~--~gl~~A~~~-----~~Pvl~I~g~~~~~~~~~-------~~~~~~~~~~~ 143 (431)
+|-|.+-.. + +.+|+ .|=|...+. .-|..|... ++|+++|.-.......-+ +...+......
T Consensus 423 aaiGa~la~p~~~Vv~i--~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~ 500 (597)
T PRK08273 423 YAIAAKFAHPDRPVIAL--VGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDL 500 (597)
T ss_pred HHHHHHHhCCCCcEEEE--EcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccC
Confidence 444444443 2 34444 466666433 578889888 899999987654321000 00000000000
Q ss_pred ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 144 DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.-.|...+.+.+--...++++.+++...+++|+. ..||+.|++..|-
T Consensus 501 ~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 501 PDVPYARFAELLGLKGIRVDDPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred CCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0136788899998888999999888777777763 4799999998763
No 249
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=70.24 E-value=88 Score=35.19 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=96.4
Q ss_pred ecCchhHHHH--hhhhhhhhc-Cc--cEEEEeCCc-chHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCC
Q 014091 70 GCCNELNAGY--AADGYARSR-GV--GACVVTFTV-GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (431)
Q Consensus 70 ~~~hE~~A~~--~A~gyar~t-g~--gv~~~t~Gp-G~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~ 143 (431)
....|++++. +|.|-+..+ |. -.+..+..+ |..=+.--+-.+-..+.++.+|.+.......+.....|+
T Consensus 565 ~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq----- 639 (889)
T TIGR03186 565 EGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ----- 639 (889)
T ss_pred echhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc-----
Confidence 3678999987 888866653 32 344444443 222233344444556788888877766632333323332
Q ss_pred ChHHHHHHHhhhee-eEEEcCCcchHHHHHHHHHHHhhhC--CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhh
Q 014091 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLG 220 (431)
Q Consensus 144 ~~~d~~~~~~~~~k-~~~~v~~~~~~~~~i~~A~~~A~~~--~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (431)
....+.+++.+-. -.+...++.++...++.+++.+... .||+||-+...-.. ++.... . .. ..
T Consensus 640 -~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~--~p~~~~-~-~~--~~------- 705 (889)
T TIGR03186 640 -DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYA--QPSLPE-D-RL--DA------- 705 (889)
T ss_pred -chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC--CCCcCC-C-cc--cc-------
Confidence 2233677777643 3456677778888899988866654 49999999865211 111100 0 00 00
Q ss_pred HHHHHHHHHHHHHhc---CCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 221 LEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a---~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
....+-+....|+.. ..-|.++|.|..-..+.++...|++.+|+
T Consensus 706 ~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI 752 (889)
T TIGR03186 706 VRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGI 752 (889)
T ss_pred hhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCC
Confidence 000010111233321 12366677777666677777888876553
No 250
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=70.04 E-value=5 Score=37.87 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCCCccc---cccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGPSLG---WVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~~~~~---~~d~~~~L~~L~~~l~ 363 (431)
.+.+.++++|++|++|+++.-+.-..... ..++.++|.||.++..+. ..+. .-++..++..|.+.+.
T Consensus 175 ~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~--~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 175 EALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLD--PIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCc--chhHHHHHhhHHHHHHHHHHHhh
Confidence 44455689999999999986554434332 135778999998776553 1111 1145666666665543
No 251
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=69.88 E-value=29 Score=35.00 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh----chHHHHHHHHHHhC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATG 263 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~----~a~~~l~~lae~~~ 263 (431)
.+++++++++|.++++++|+.|.|.... .....+.+++..++
T Consensus 222 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 222 AETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 4678899999999999999999888632 34456666777665
No 252
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=69.32 E-value=9.8 Score=36.47 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=47.2
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhccc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLRKN 365 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~~~ 365 (431)
.+.++.+.||++|++|+++--...+++.. ...+.|++.|+..+...... +.....++..++..|.+.|.-.
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~Lgve 282 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVE 282 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCC
Confidence 55677889999999999997555444442 22467899998877644311 1111226778888888887643
No 253
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=69.31 E-value=43 Score=35.88 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=69.2
Q ss_pred EecCchhHHHHhhhhhhhh---cC-ccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecC
Q 014091 69 VGCCNELNAGYAADGYARS---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (431)
Q Consensus 69 v~~~hE~~A~~~A~gyar~---tg-~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~ 141 (431)
..+-|=.+..-+|.|+|.. .| ...+++..|=|+++ ..-++-.|-..+.|||+|.-+......+.-..+...+.
T Consensus 110 ~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~ 189 (581)
T PRK12315 110 FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLK 189 (581)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhh
Confidence 3445544556666676554 34 56777777888875 45677777777799999997654332211100000000
Q ss_pred ---CCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 142 ---LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 142 ---~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
.....+....|+.+--....+-+..++ +.+.+|++.|....||+.|.+-
T Consensus 190 ~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~-~~l~~a~~~a~~~~gP~~i~~~ 241 (581)
T PRK12315 190 ELRDTNGQSENNLFKAMGLDYRYVEDGNDI-ESLIEAFKEVKDIDHPIVLHIH 241 (581)
T ss_pred hhhhcccccHHHHHHhcCCeEEEeeCCCCH-HHHHHHHHHHHhCCCCEEEEEE
Confidence 000112345677763333344355554 4456777777777799999874
No 254
>PRK13938 phosphoheptose isomerase; Provisional
Probab=69.12 E-value=26 Score=31.76 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHH--HHhhhc-----CCCceEEecCchhHHHHhh----hhh----hhh---c
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTL--LDHLIA-----EPELNLVGCCNELNAGYAA----DGY----ARS---R 88 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l--~~al~~-----~~~i~~v~~~hE~~A~~~A----~gy----ar~---t 88 (431)
...++.+++.|++.|-=++||+-++..... ...|.. .+.+..+....+ .+-..| .+| ++. .
T Consensus 32 ~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 32 RAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhc
Confidence 356788888999999899999988776543 333321 123333322222 122221 222 221 1
Q ss_pred -Cc-cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 89 -GV-GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 89 -g~-gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.. -++++.|..|-+ +.+..+..|+..++|+|.||+.....
T Consensus 111 ~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 22 466666667755 78999999999999999999976443
No 255
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=68.83 E-value=1.2e+02 Score=29.76 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCCch-----HHHHHhhhcCC-CceEEe-cCchhHHHHhhhhhhhhcCccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSVPGDFN-----LTLLDHLIAEP-ELNLVG-CCNELNAGYAADGYARSRGVGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgvpG~~~-----~~l~~al~~~~-~i~~v~-~~hE~~A~~~A~gyar~tg~gv~~~t~ 97 (431)
++..+++.+.|.+.. =+.++.+..+-. ..+.+.|.+.- .=|++. ..-|++++.+|.|.|......+|.. .
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~-~ 82 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF-M 82 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe-e
Confidence 345555555555542 234555544321 11233343321 135555 5789999999999999532444432 2
Q ss_pred CcchH-H----HHHHHHHhhh-------cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCC
Q 014091 98 TVGGL-S----VLNAIAGAYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNN 164 (431)
Q Consensus 98 GpG~~-n----~~~gl~~A~~-------~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~ 164 (431)
.+-.+ - ..+-+ |+. -++||++....-+....+ ..|+ +..+ .+++.+-..... ..+
T Consensus 83 ~~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G---~tH~-----~~~e--a~~r~iP~l~V~~P~d 150 (327)
T PRK09212 83 TFNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVA---AQHS-----QCYA--AWYSHIPGLKVVAPYF 150 (327)
T ss_pred hhhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCC---cccc-----cCHH--HHHhcCCCCEEEeeCC
Confidence 22222 2 22222 233 379998876542222111 1221 2222 888887655543 344
Q ss_pred cchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 165 LGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.++...++.| ....+||||..|...
T Consensus 151 ~~e~~~~l~~a----~~~~~Pv~i~~~~~~ 176 (327)
T PRK09212 151 AADCKGLLKTA----IRDPNPVIFLENEIL 176 (327)
T ss_pred HHHHHHHHHHH----HhCCCcEEEEEchhh
Confidence 55555555544 445799999776654
No 256
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=68.76 E-value=3.3 Score=38.22 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=31.5
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccCC--CCcceEEEccCceee
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTV 340 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~I~Id~d~~~~ 340 (431)
.+.+.++++|++|++|+++.-.....+.... ++.++|.||.++...
T Consensus 160 ~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 160 EAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPA 207 (218)
T ss_pred HHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 3445667899999999998654333332222 478899999987644
No 257
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=68.73 E-value=16 Score=44.14 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=67.9
Q ss_pred hhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhh--cCCcEEEEeCCCCCcccCCC---------ceeeeecCCCChHH
Q 014091 80 AADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYS--ENLPVICIVGGPNSNDYGTN---------RILHHTIGLPDFTQ 147 (431)
Q Consensus 80 ~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~I~g~~~~~~~~~~---------~~~~~~~~~~~~~d 147 (431)
+|-|.+...+ +.+|+ +.--|..-.++.|..|.. .++|+++|.-.......-+. ......+.+..-.|
T Consensus 769 aAIGaala~~r~Vv~i-~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~d 847 (1655)
T PLN02980 769 TAIGFAVGCNKRVLCV-VGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDIS 847 (1655)
T ss_pred HHHHHhhcCCCCEEEE-EehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCC
Confidence 3444444434 44444 333445567899999877 48999888865443111100 00000111111246
Q ss_pred HHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...+.+.+-....++++++++.+.+++|+ ..+||+.|+|..|-
T Consensus 848 f~~lA~a~G~~~~rV~~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 848 IENLCLAHGVRHLHVGTKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred HHHHHHHcCCceeecCCHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 78889999889999999988877776655 45799999999874
No 258
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=68.60 E-value=9.7 Score=42.38 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHhcCCC-EEEeCCccchhchHHHHHHHHH-HhCCCeEecCCCcccCCCCC-----CCcceeecCCCC
Q 014091 220 GLEAAVEATADFLNKAVKP-VLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEHH-----PHFIGTYWGAVS 292 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rp-vI~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~gkg~~~~~h-----p~~~G~~~G~~~ 292 (431)
.-+++++.+++.|++.+.. .++.|..... +..-.+.+|++ .+|.+-+... ++. ..... ....|. ..
T Consensus 295 SWdEAld~ia~kL~~i~~~ia~~~s~~~t~-Ee~y~~~kl~r~~lgt~nid~~-~r~-~~~~~~~~~~~~~~g~----~~ 367 (797)
T PRK07860 295 SWSEALAVAARGLAAARGRVGVLVGGRLTV-EDAYAYAKFARVALGTNDIDFR-ARP-HSAEEADFLAARVAGR----GL 367 (797)
T ss_pred CHHHHHHHHHHHHHhhhccEEEEeCCCCCH-HHHHHHHHHHHHhcCCCccccc-ccc-ccchHHHHHHhhccCC----CC
Confidence 3577889999999887654 4444443332 22234567776 4666544211 110 00000 111121 10
Q ss_pred CHHHHHHhhhCCEEEEeCCccCcccccccccC-----CCCcceEEEccCce
Q 014091 293 SSFCGEIVESADAYVFVGPIFNDYSSVGYSLL-----IKKEKAIIVQPHRV 338 (431)
Q Consensus 293 ~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~-----~~~~~~I~Id~d~~ 338 (431)
... .+-++++|+||++|+...+....-+..+ ..+.|+|.||+...
T Consensus 368 ~~~-~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 368 GVT-YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred CCC-HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 111 2346799999999998765332111111 24679999998654
No 259
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=68.60 E-value=56 Score=31.75 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=78.6
Q ss_pred cCCCEEEecCCCchHHHHHhhhc--CCCceEEecCchhHHHHhhhhhhhhc---C-ccEEEEeCCcchH--HHHHHHHHh
Q 014091 40 IGAKDVFSVPGDFNLTLLDHLIA--EPELNLVGCCNELNAGYAADGYARSR---G-VGACVVTFTVGGL--SVLNAIAGA 111 (431)
Q Consensus 40 ~GV~~vFgvpG~~~~~l~~al~~--~~~i~~v~~~hE~~A~~~A~gyar~t---g-~gv~~~t~GpG~~--n~~~gl~~A 111 (431)
.|=+.|+. -+.....++....- .-++.++...+|.+++++ .|.++.. + -.-+++..|=|.+ ..+.+|..|
T Consensus 37 ~g~~~vi~-~~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~a-~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a 114 (299)
T PRK11865 37 LGKNTVIV-VATGCLEVITTPYPETAWNVPWIHVAFENAAAVA-SGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGA 114 (299)
T ss_pred cCCCEEEE-eCCCcccccCccCcCCccccccchhhhcchHHHH-HHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHH
Confidence 35444443 44555555543321 125678888888776654 3444432 3 1234444566655 467899999
Q ss_pred hhcCCcEEEEeCCCCCccc-CCC-ce--ee-----------eecCCC-ChHHHHHHHhhh-eeeEEEcCCcchHHHHHHH
Q 014091 112 YSENLPVICIVGGPNSNDY-GTN-RI--LH-----------HTIGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELIDT 174 (431)
Q Consensus 112 ~~~~~Pvl~I~g~~~~~~~-~~~-~~--~~-----------~~~~~~-~~~d~~~~~~~~-~k~~~~v~~~~~~~~~i~~ 174 (431)
...+.++++|.=+...... |.. .. .. ...|.. .-.|...++... +.|..++. +. -+..+.+
T Consensus 115 ~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~-~~-~~~~l~~ 192 (299)
T PRK11865 115 MERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATAS-IG-YPEDFME 192 (299)
T ss_pred HHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEe-CC-CHHHHHH
Confidence 9999999999876433211 000 00 00 000000 112445555333 34555543 22 2344566
Q ss_pred HHHHhhhCCCcEEEEEc
Q 014091 175 AISTALKESKPVYISIS 191 (431)
Q Consensus 175 A~~~A~~~~GPv~l~iP 191 (431)
+++.|...+||.+|.+=
T Consensus 193 ~i~~A~~~~Gps~I~v~ 209 (299)
T PRK11865 193 KVKKAKEVEGPAYIQVL 209 (299)
T ss_pred HHHHHHhCCCCEEEEEE
Confidence 77777777899999875
No 260
>PRK09330 cell division protein FtsZ; Validated
Probab=68.45 E-value=14 Score=37.18 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
..++..+++.+.|..+.-.+|++|.|. ..+++...+.++++..+++++.-..-.-.+..... .+ .......+
T Consensus 83 aaee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r----~~---nA~~gL~~ 155 (384)
T PRK09330 83 AAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKR----MK---QAEEGIEE 155 (384)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhH----HH---HHHHHHHH
Confidence 345677888888999998889988554 34567778999999999876653221000100000 01 11124456
Q ss_pred HhhhCCEEEEeCC
Q 014091 299 IVESADAYVFVGP 311 (431)
Q Consensus 299 ~~~~aD~vl~lG~ 311 (431)
+.+.+|.+|++=.
T Consensus 156 L~~~~D~vIvi~N 168 (384)
T PRK09330 156 LRKHVDTLIVIPN 168 (384)
T ss_pred HHHHCCEEEEEec
Confidence 6678999999964
No 261
>PRK12474 hypothetical protein; Provisional
Probab=68.42 E-value=18 Score=38.00 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=65.8
Q ss_pred HhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ce-e---ee------ecCC
Q 014091 79 YAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN---RI-L---HH------TIGL 142 (431)
Q Consensus 79 ~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~-~---~~------~~~~ 142 (431)
-+|-|.+.... +.+|+ .|=|... .+.-|..|...++|+++|.-.......-+. .. . .. .+..
T Consensus 396 paAiGa~lA~p~r~vv~i--~GDG~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
T PRK12474 396 PLAAGAAVAAPDRKVVCP--QGDGGAAYTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHN 473 (518)
T ss_pred HHHHHHHHHCCCCcEEEE--EcCchhcchHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCC
Confidence 34555555542 34444 3555553 458888999999999999876543211000 00 0 00 0000
Q ss_pred CChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 143 PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 143 ~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
++ .|...+.+.+-....++++++++.+.+++|+ ...||+.|++.
T Consensus 474 ~~-~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~----~~~~p~liev~ 517 (518)
T PRK12474 474 PE-LNWMKIAEGLGVEASRATTAEEFSAQYAAAM----AQRGPRLIEAM 517 (518)
T ss_pred CC-CCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----cCCCCEEEEEE
Confidence 01 3678888888888999999988877777775 34699999985
No 262
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=68.31 E-value=29 Score=34.32 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh----chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
.+.++++++++.++++++|+.|.+..+. .....+..|+..+|.- ...|.+.+...+|++.- .......
T Consensus 230 ~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~-----~~~~~~~ 301 (374)
T cd00368 230 AETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSA-----PDANRVR 301 (374)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcC-----CCHHHHH
Confidence 3568899999999999999999888532 2334455555555431 11233444444453221 1223455
Q ss_pred HHhhhCCEEEEeCCccCccc
Q 014091 298 EIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~ 317 (431)
++++..|+++++...+++..
T Consensus 302 ~al~~~~~~V~~d~~~~eta 321 (374)
T cd00368 302 AALKKLDFVVVIDIFMTETA 321 (374)
T ss_pred HHHhCCCeEEEEecCCCcch
Confidence 68889999999998876543
No 263
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=68.02 E-value=47 Score=31.29 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=52.6
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Cc
Q 014091 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (431)
Q Consensus 91 gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (431)
.-+++..|=|..+ ..-++..|...++|.|++.-+......... .+... ...|...+++.+--...++. +.
T Consensus 128 ~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~--~~~~~---~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 128 YRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP--TDDIL---FTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred CEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc--Hhhcc---CchhHHHHHHHcCCeEEEECCCCH
Confidence 3444445777776 467888888889874444433322111110 00011 12366777887754455665 55
Q ss_pred chHHHHHHHHHHHhhhC-CCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~-~GPv~l~iP~dv 194 (431)
+++ .+|++.|... .+|+.|.+-..-
T Consensus 203 ~~l----~~al~~a~~~~~~P~~I~~~t~k 228 (255)
T cd02012 203 EEI----LAALEEAKKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHH----HHHHHHHHHcCCCCEEEEEEeec
Confidence 444 5555555544 689998887543
No 264
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=67.25 E-value=1.2e+02 Score=33.16 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCC-chHHHHHhhhcCCCceEE-ecCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgv----pG~-~~~~l~~al~~~~~i~~v-~~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
++..+++.+.|.+.. =+.|+.+ +++ ....|.+.+ | =||+ ..--|++++.+|.|.|. .| ..+|.+-+
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~f---P-dRffDvGIAEQhaVt~AAGLA~-~G~kPvv~iys 455 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERF---P-DRFFNVGMAEQHAVTFSAGLSS-GGLKPFCIIPS 455 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHc---c-ccccccCccHHHHHHHHHHHHH-CCCEEEEEeeh
Confidence 466666666666553 2456655 322 222333333 2 2333 36789999999999996 56 55554332
Q ss_pred CcchH-HHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEc-CCcchHHHHHHH
Q 014091 98 TVGGL-SVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV-NNLGDAHELIDT 174 (431)
Q Consensus 98 GpG~~-n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v-~~~~~~~~~i~~ 174 (431)
+ .+ -+.--| .++-..+.||.++.-... ..+.+...|+. .+| +.+++.+-.+.... .+++++..+
T Consensus 456 -t-FlqRAyDQI~~Dval~~lpV~~vid~aG--lvg~DG~TH~g-----~~D-ia~lr~IPnm~V~aPsD~~El~~m--- 522 (701)
T PLN02225 456 -A-FLQRAYDQVVHDVDRQRKAVRFVITSAG--LVGSDGPVQCG-----AFD-IAFMSSLPNMIAMAPADEDELVNM--- 522 (701)
T ss_pred -h-HHHHHHHHHHHHHHhhcCCceEEEECCc--cCCCCCccccc-----cHH-HHHHhcCCCCEEEeeCCHHHHHHH---
Confidence 1 11 111111 123455678877754322 22333334432 234 58888887665433 344455444
Q ss_pred HHHHhh-hCCCcEEEEEccCC
Q 014091 175 AISTAL-KESKPVYISISCNL 194 (431)
Q Consensus 175 A~~~A~-~~~GPv~l~iP~dv 194 (431)
++.|. ...|||||-+|...
T Consensus 523 -L~~A~~~~~gPv~IR~pRg~ 542 (701)
T PLN02225 523 -VATAAYVTDRPVCFRFPRGS 542 (701)
T ss_pred -HHHHHhcCCCCEEEEecccc
Confidence 44444 34699999999874
No 265
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.24 E-value=9.4 Score=41.03 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcC----CCEEEe--CCccch---hchHHHHHHHHHHhCCCeEec-CCCcccCCCCCCCcceeecCC
Q 014091 221 LEAAVEATADFLNKAV----KPVLVG--GPNIRV---AKAQKAFIELADATGYPIAIM-PSGKGLVPEHHPHFIGTYWGA 290 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~----rpvI~~--G~g~~~---~~a~~~l~~lae~~~~Pv~tt-~~gkg~~~~~hp~~~G~~~G~ 290 (431)
-+++++.+++.|++.+ .-.|+. |.+... ......+.+|+..+|.++... ...-+..-..++...|.. ..
T Consensus 78 WDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~-~~ 156 (609)
T cd02751 78 WDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSD-EV 156 (609)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccc-hh
Confidence 5678888888886532 123332 222211 123456788888887644211 000000001112333321 10
Q ss_pred C-CCHHHHHHhhhCCEEEEeCCccCccccccc--------cc----CCCCcceEEEccCceeec
Q 014091 291 V-SSSFCGEIVESADAYVFVGPIFNDYSSVGY--------SL----LIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 291 ~-~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~--------~~----~~~~~~~I~Id~d~~~~~ 341 (431)
. ......+..++||+||++|+...+.....| .. ..++.|+|.||+......
T Consensus 157 ~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta 220 (609)
T cd02751 157 YEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTA 220 (609)
T ss_pred ccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccc
Confidence 0 011122333359999999988754433222 11 124679999998876543
No 266
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.17 E-value=4.7 Score=41.88 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcC------CCEEEeCCccchhchHHHHH-HHHHHhCCCeEecCCCcccCC--CCCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFI-ELADATGYPIAIMPSGKGLVP--EHHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~------rpvI~~G~g~~~~~a~~~l~-~lae~~~~Pv~tt~~gkg~~~--~~hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++.+ ...++.|.+.......-... +|+..+|.+.+.........+ .-+....|. + .
T Consensus 75 WdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~--~-~ 151 (477)
T cd02759 75 WDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGF--G-L 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhcc--C-C
Confidence 4677888888777532 22444454433222222233 688888877543221100000 000111221 1 1
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCcccc-cccccC----CCCcceEEEccCceeec
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~-~~~~~~----~~~~~~I~Id~d~~~~~ 341 (431)
+ ....-+++||+||++|+.+.+... ..+..+ .++.|+|.||+......
T Consensus 152 ~--~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta 204 (477)
T cd02759 152 G--YDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLA 204 (477)
T ss_pred C--CCchhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhh
Confidence 1 112346799999999998754432 111111 24679999998876543
No 267
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=66.98 E-value=1 Score=42.99 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=62.5
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~ 340 (431)
+-++|++-. |.+-+|-|+---.-.-+..+...++.++.+|.||.+-+.+-+..+++.. +...|.|++|+||...
T Consensus 301 kNniPfvLA----GSIRDDGPlPdvitdvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GNll--Ps~VKtiCVDiNPavV 374 (415)
T COG1915 301 KNNIPFVLA----GSIRDDGPLPDVITDVMEAQEEMREHLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAVV 374 (415)
T ss_pred hcCCCeEEe----cccccCCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhhcCcc--hhhceEEEEecChHHh
Confidence 467887763 3444444432211111223445567889999999999888777665543 3467999999999866
Q ss_pred cC----CCccc--c-ccHHHHHHHHHHHhcc
Q 014091 341 GN----GPSLG--W-VFMADFLSALAKKLRK 364 (431)
Q Consensus 341 ~~----~~~~~--~-~d~~~~L~~L~~~l~~ 364 (431)
.+ +.... . -|+..||..|...+++
T Consensus 375 TKL~DRGs~qavgvVTDVGlFlplL~~elkk 405 (415)
T COG1915 375 TKLSDRGSSQAVGVVTDVGLFLPLLVRELKK 405 (415)
T ss_pred eecccCCccceeEEEeehhHhHHHHHHHHHH
Confidence 41 11211 1 2899999999887764
No 268
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=66.95 E-value=46 Score=32.35 Aligned_cols=124 Identities=15% Similarity=0.030 Sum_probs=69.2
Q ss_pred CceEEecCchhHHHHhhhhhhhh---cC-c-cEEEEeCCcchH--HHHHHHHHhhhcCCcEEEEeCCCCCcc--------
Q 014091 65 ELNLVGCCNELNAGYAADGYARS---RG-V-GACVVTFTVGGL--SVLNAIAGAYSENLPVICIVGGPNSND-------- 129 (431)
Q Consensus 65 ~i~~v~~~hE~~A~~~A~gyar~---tg-~-gv~~~t~GpG~~--n~~~gl~~A~~~~~Pvl~I~g~~~~~~-------- 129 (431)
++-++...++.+.+.++ |.+++ .| . ..+++..|=|.+ ..+.++-.|...+.|+++|.-+.....
T Consensus 63 ~~~~i~~~~G~~~~~A~-G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~ 141 (300)
T PRK11864 63 TVPVLHTAFAATAAVAS-GIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS 141 (300)
T ss_pred cccceeehhhChHHHHH-HHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC
Confidence 46677777776655544 33332 22 2 234435666665 356899999999999999986532211
Q ss_pred -cCCCcee-eeecCCC-ChHHHHHHHhhh-eeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 130 -YGTNRIL-HHTIGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 130 -~~~~~~~-~~~~~~~-~~~d~~~~~~~~-~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
...+... -...|.. .-.|...++... ..|..++.. .+ +..+.++++.|...+||.+|.+=
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~-~~~~~~~i~~A~~~~Gps~I~~~ 205 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AY-PEDFIRKLKKAKEIRGFKFIHLL 205 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CC-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 1111000 0001110 112556666554 346666643 22 34457777777778899999875
No 269
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=66.32 E-value=11 Score=29.89 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=28.3
Q ss_pred cCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 235 a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
.++.++++|.|..++-..+.++++++..|+++-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~ 35 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK 35 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE
Confidence 478899999999877777999999999999853
No 270
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.88 E-value=14 Score=33.55 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+..++++.++..|--||+|||-+-+.+.. =..+++.+||+.+|+.+-...
T Consensus 54 ~A~eA~raAaA~LlLAk~PVISVNGN~AA-L~p~e~v~La~~~~aklEVNL 103 (256)
T COG1701 54 PALEAIRAAAAALLLAKHPVISVNGNVAA-LVPEEVVELAEATGAKLEVNL 103 (256)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEcCceee-eCcHHHHHHHHHhCCceEEEe
Confidence 35678888999999999999998877653 367999999999999886543
No 271
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=65.83 E-value=20 Score=33.79 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-+.+..|+++|..-.+| ++++|..- .+...+.++|+++|.+.+..-. +| |.+.+. ....
T Consensus 55 ~~~L~~Aa~~i~~i~~~~~Il~Vstr~---~~~~~V~k~A~~tg~~~i~~Rw------------~p---GtlTN~-~~~~ 115 (249)
T PTZ00254 55 WEKLKLAARVIAAIENPADVVVVSSRP---YGQRAVLKFAQYTGASAIAGRF------------TP---GTFTNQ-IQKK 115 (249)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEcCH---HHHHHHHHHHHHhCCeEECCcc------------cC---CCCCCc-cccc
Confidence 34566777776654333 77777543 3778999999999998765321 11 222221 1234
Q ss_pred hhhCCEEEEeCCccCc
Q 014091 300 VESADAYVFVGPIFND 315 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~ 315 (431)
+.+.|+||++..+-+.
T Consensus 116 f~~P~llIV~Dp~~d~ 131 (249)
T PTZ00254 116 FMEPRLLIVTDPRTDH 131 (249)
T ss_pred cCCCCEEEEeCCCcch
Confidence 5789999999876553
No 272
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.49 E-value=12 Score=39.59 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCCccch-hchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcce---eecCC
Q 014091 221 LEAAVEATADFLNK------AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIG---TYWGA 290 (431)
Q Consensus 221 ~~~~~~~~~~~L~~------a~rpvI~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G---~~~G~ 290 (431)
-+++++.+++.|++ .+...++.|.+... .........|...+|.+-+.+. +.+.. .+...+ .+ |.
T Consensus 71 WdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~---~~~~~-~~~~~~~~~~~-G~ 145 (539)
T cd02762 71 WDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSA---ATADQ-KPGHFWSGLMF-GH 145 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccc---cchhh-hHHHHHHHHhc-CC
Confidence 46778888888864 23455565654432 1122233567777776532211 11110 000000 11 21
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCcccccccc------cC----CCCcceEEEccCceeec
Q 014091 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYS------LL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 291 ~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~------~~----~~~~~~I~Id~d~~~~~ 341 (431)
..... .+-+++||+||++|+...+.....+. .+ .++.|+|.||+......
T Consensus 146 ~~~~~-~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta 205 (539)
T cd02762 146 PGLHP-VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETA 205 (539)
T ss_pred CCCCC-chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhh
Confidence 11111 23358999999999887654322221 11 24679999998876543
No 273
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=64.17 E-value=34 Score=27.04 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=49.1
Q ss_pred EEEeCCccchh-chHHHHHHHHHHhCCCeEecCCCc-ccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcc
Q 014091 239 VLVGGPNIRVA-KAQKAFIELADATGYPIAIMPSGK-GLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (431)
Q Consensus 239 vI~~G~g~~~~-~a~~~l~~lae~~~~Pv~tt~~gk-g~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~ 316 (431)
++-+|.|..++ -+.+.|++.+++.|+.+-....+. |+.. .. -.+.+.++|+||++|....+.
T Consensus 4 i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~------------~l----~~~~i~~Ad~vi~~~~~~~~~ 67 (96)
T cd05569 4 VTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIEN------------EL----TAEDIAEADAVILAADVPVDD 67 (96)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccC------------cC----CHHHHhhCCEEEEecCCCCch
Confidence 34466676654 477999999999999987665543 2111 01 124567999999999755432
Q ss_pred cccccccCCCCcceEEEccCc
Q 014091 317 SSVGYSLLIKKEKAIIVQPHR 337 (431)
Q Consensus 317 ~~~~~~~~~~~~~~I~Id~d~ 337 (431)
. . +.+.++++.+.+.
T Consensus 68 ~--r----f~gk~v~~~~~~~ 82 (96)
T cd05569 68 E--R----FAGKRVYEVSVAE 82 (96)
T ss_pred h--h----hCCCeEEEecHHH
Confidence 1 1 2355777776653
No 274
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=64.13 E-value=7.6 Score=32.56 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
++...+..+.|-+.+-|.|++-.|.. ..+++.++|++.++|++.|...
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~---~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLE---PPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEcCCc
Confidence 34555667777778899888877773 6799999999999999998763
No 275
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=63.58 E-value=19 Score=34.96 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=35.7
Q ss_pred CEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-hhCCEEEEeCCcc
Q 014091 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-ESADAYVFVGPIF 313 (431)
Q Consensus 238 pvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~-~~aD~vl~lG~~~ 313 (431)
-+|+++.... ..-....+||++++||+||+.| .|. -.-..+.+ .+.|+||.||...
T Consensus 30 ~VIlvsDn~a---D~~lA~~iaellNA~Vlttpwg-------------~yn----es~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 30 VVILVSDNEA---DLLLALPIAELLNAPVLTTPWG-------------IYN----ESVLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred EEEEecchHH---HHHHhhHHHHHhCCeeEecCcc-------------ccc----HHHHHHHHhhCCceEEEECCCC
Confidence 5666655442 3455677999999999998843 221 11222333 4799999999654
No 276
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.37 E-value=8.6 Score=40.54 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCC--CCcceeecCCCC
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHH--PHFIGTYWGAVS 292 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~h--p~~~G~~~G~~~ 292 (431)
-+++++.+++.|++. +..+++.|..... ....+.+|+..+|.|-+.+...-...+... ....|. .+
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~--~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~----~~ 154 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYGHN--NSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGG----WD 154 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCc--cchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCC----CC
Confidence 567778888777643 3335566654432 223688999999988543322111000000 001111 11
Q ss_pred CHHHHHHhhhCCEEEEeCCccCccccccc--cc----CCCCcceEEEccCceee
Q 014091 293 SSFCGEIVESADAYVFVGPIFNDYSSVGY--SL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 293 ~~~~~~~~~~aD~vl~lG~~~~~~~~~~~--~~----~~~~~~~I~Id~d~~~~ 340 (431)
. ...-+++||+||++|+...+.....+ .. ..++.|+|.||+.....
T Consensus 155 ~--~~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~t 206 (523)
T cd02757 155 Y--NSYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNT 206 (523)
T ss_pred C--CCcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChh
Confidence 1 11236899999999987644322111 11 12578999999886544
No 277
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=62.75 E-value=19 Score=34.32 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=53.9
Q ss_pred ccEEEEeCCcchH-H---HHHHHHHhhhcCCc---EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhh--eeeEE
Q 014091 90 VGACVVTFTVGGL-S---VLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI--TCSQA 160 (431)
Q Consensus 90 ~gv~~~t~GpG~~-n---~~~gl~~A~~~~~P---vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~k~~~ 160 (431)
..++++..|=|+. | ..=+|--|...+.| +|+++-...-... .. ..+... ..+..+..+.+ --...
T Consensus 140 ~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~s-T~--~~~~~~---~~~~~~~a~~~gip~~~V 213 (265)
T cd02016 140 KVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFT-TD--PRDSRS---SPYCTDVAKMIGAPIFHV 213 (265)
T ss_pred CeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEE-ec--HHHhcc---cccHHHHHeecCCCEEEE
Confidence 4677777787763 2 22223234556776 8888765321100 00 000000 00122233332 33444
Q ss_pred EcCCcchHHHHHHHHHHHhhhCCCcEEEEEcc
Q 014091 161 VVNNLGDAHELIDTAISTALKESKPVYISISC 192 (431)
Q Consensus 161 ~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~ 192 (431)
.=.+++.+.+.+++|++.++...||+.|++=-
T Consensus 214 dG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~t 245 (265)
T cd02016 214 NGDDPEAVVRATRLALEYRQKFKKDVVIDLVC 245 (265)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 55677788888999999998889999999853
No 278
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=62.19 E-value=17 Score=40.61 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=27.7
Q ss_pred HhhhCCEEEEeCCccCcccccccccC------CCCcceEEEccCceee
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~I~Id~d~~~~ 340 (431)
-+.+||+||++|+...+.....+..+ -++.|+|.||+.....
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~t 250 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRS 250 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCch
Confidence 45899999999998765433222111 1467999999765433
No 279
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=62.12 E-value=32 Score=31.31 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.7
Q ss_pred EEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 92 ACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 92 v~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+++.-||.|.+. .++.+--|+.-++|+|.||+.+.+.
T Consensus 89 vviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 89 VVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh
Confidence 688889999995 5566667899999999999987654
No 280
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=61.89 E-value=26 Score=34.85 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+.|..+...+|++|-|. ..+++...+.++++..+++++.-.. .|-...-..-.|. .....+++
T Consensus 88 aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt----~Pf~~Eg~~r~~n---A~~~l~~L 160 (349)
T TIGR00065 88 AEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVT----KPFKFEGLKRRKK---AEEGLERL 160 (349)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEe----CCccccchhhHHH---HHHHHHHH
Confidence 45667788888888998888888554 3457788999999998877665321 1111110011111 11244566
Q ss_pred hhhCCEEEEeCC
Q 014091 300 VESADAYVFVGP 311 (431)
Q Consensus 300 ~~~aD~vl~lG~ 311 (431)
.+.+|++|++-.
T Consensus 161 ~~~~D~vividN 172 (349)
T TIGR00065 161 KQAVDTLIVIPN 172 (349)
T ss_pred HHhCCEEEEEeC
Confidence 678999999974
No 281
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.10 E-value=21 Score=35.14 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
-...+.+++.++.+..+.|+++-+..-|++|.++|..+++++|+||+...
T Consensus 152 KTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 152 KTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK 201 (340)
T ss_pred hHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC
Confidence 44568888888887666666655566677899999999999999999853
No 282
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=60.91 E-value=9.2 Score=29.74 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=41.3
Q ss_pred CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCc
Q 014091 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (431)
Q Consensus 237 rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~ 312 (431)
+.|+-+|.|+...+..+.+++||+.+|+-|-.|-. -.|.+|.+ ..+|. +|.. -.+++.|.+|-+
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~-sG~~---------v~P~lyia~GIS 73 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQ-SGKT---------VAPKLYIAFGIS 73 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBST-TSB-----------T-SEEEEES--
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCC-CCcE---------EeeeeeEeecch
Confidence 34667888888777889999999999999988854 36778765 45654 3321 267999999954
No 283
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=60.25 E-value=1.9e+02 Score=30.85 Aligned_cols=154 Identities=14% Similarity=0.033 Sum_probs=84.2
Q ss_pred HHHHHHHHcCC-CEEEecCCCchHHH-HHhhhcCCCceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchHH-
Q 014091 32 HLARRLVEIGA-KDVFSVPGDFNLTL-LDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGLS- 103 (431)
Q Consensus 32 ~l~~~L~~~GV-~~vFgvpG~~~~~l-~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~n- 103 (431)
.+++.|.+.=- +.++..-++....+ ...+.-...-+|+.+.. =..+.-+|-|.+.... +.+|+ .|=|...
T Consensus 373 ~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i--~GDG~f~m 450 (566)
T PRK07282 373 AVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILF--VGDGGFQM 450 (566)
T ss_pred HHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEE--Ecchhhhc
Confidence 35566655422 45554443332222 23332222344553321 1223344555555542 33333 4666554
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCC--------CceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A 175 (431)
...-|..|...++|++++.-.......-+ +......+. ...|...+.+.+-.+..++++++++.+.++ +
T Consensus 451 ~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~--~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~ 527 (566)
T PRK07282 451 TNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFD--TLPDFQLMAQAYGIKHYKFDNPETLAQDLE-V 527 (566)
T ss_pred cHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCC--CCCCHHHHHHHCCCEEEEECCHHHHHHHHH-H
Confidence 34688999999999999987654322100 000000010 113678889999888999999988876664 2
Q ss_pred HHHhhhCCCcEEEEEccCC
Q 014091 176 ISTALKESKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~~GPv~l~iP~dv 194 (431)
+ ...+|+.|++..|-
T Consensus 528 ~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 528 I----TEDVPMLIEVDISR 542 (566)
T ss_pred h----cCCCCEEEEEEeCC
Confidence 2 34789999998763
No 284
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.06 E-value=19 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.2
Q ss_pred CCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 237 KPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 237 rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
|.++++|.|..++-..+.+.++++..|+|+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~ 30 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA 30 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce
Confidence 467899999988777889999999999985
No 285
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=59.62 E-value=74 Score=34.46 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHcCC--CEEEe----cCCCchHHHHH-hhhcCCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIGA--KDVFS----VPGDFNLTLLD-HLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV--~~vFg----vpG~~~~~l~~-al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
++..+++.+.|.+..- +.|+. ++|+..+..+. .+ | =|++. ..-|++++.+|.|.|. .| ..+|.+ .
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~f---P-dR~fdvGIAEq~~Vg~AaGLA~-~G~rPvv~~-f 430 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRF---P-TRCFDVGIAEQHAVTFAAGLAC-EGLKPFCTI-Y 430 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHc---c-ccccCCCcCHHHHHHHHHHHHH-CCCeEEEEe-h
Confidence 5677777777776543 23333 33433333222 33 2 23443 5689999999999998 56 555554 2
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcchHHHHHHHH
Q 014091 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGDAHELIDTA 175 (431)
Q Consensus 98 GpG~~n~~~gl-~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~~~~~i~~A 175 (431)
.+=..-+.--| .++-..+.||+++...... .+.+...|+. .....+++.+-..... ..++.++ ..+
T Consensus 431 s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~--~g~dG~TH~~------~~Dia~lr~iPnl~V~~Psd~~E~----~~~ 498 (641)
T PLN02234 431 SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGL--MGADGPTHCG------AFDVTFMACLPNMIVMAPSDEAEL----FNM 498 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEeCCcc--CCCCCccccc------cHHHHHHhcCCCCEEEeeCCHHHH----HHH
Confidence 21111122222 1334688999888633221 2322333432 2346677766554432 3344444 455
Q ss_pred HHHhhhC-CCcEEEEEccCC
Q 014091 176 ISTALKE-SKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~-~GPv~l~iP~dv 194 (431)
++.|... .+|++|.+|...
T Consensus 499 l~~a~~~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 499 VATAAAIDDRPSCFRYHRGN 518 (641)
T ss_pred HHHHHhCCCCCEEEEeeccc
Confidence 5555444 599999999864
No 286
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=59.40 E-value=30 Score=33.59 Aligned_cols=101 Identities=16% Similarity=-0.018 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC-------CceEEecCchhHHH------------Hhhhhhhhhc
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG------------YAADGYARSR 88 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~------------~~A~gyar~t 88 (431)
..++.+++.|++-|-=++||.-++..+..+++..--+ .+..+..-.+.+.. +..+=.+..-
T Consensus 46 ~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l 125 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGL 125 (296)
T ss_pred HHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCC
Confidence 4567888999999888889998888877788665311 12222222221111 1111111111
Q ss_pred C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 89 G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 89 g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+ --+++..|..|.+ +.+.++..|+..+.++|.||+.....
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2 3455556666666 78899999999999999999876543
No 287
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=59.28 E-value=31 Score=33.60 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCc-cchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPN-IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g-~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+.|..+...+|++|-| ...+++...+.++++..+++++.-. ..|....-..-.|. .....+++
T Consensus 71 a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vv----t~Pf~~Eg~~~~~n---A~~~l~~L 143 (304)
T cd02201 71 AEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVV----TKPFSFEGKKRMRQ---AEEGLEEL 143 (304)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEE----eCCccccchhHHHH---HHHHHHHH
Confidence 4556777888888888888887743 3446777889999999987655422 11111110000010 11244556
Q ss_pred hhhCCEEEEeCC
Q 014091 300 VESADAYVFVGP 311 (431)
Q Consensus 300 ~~~aD~vl~lG~ 311 (431)
.+.+|.++++-.
T Consensus 144 ~~~~d~~ividN 155 (304)
T cd02201 144 RKHVDTLIVIPN 155 (304)
T ss_pred HHhCCEEEEEec
Confidence 678999999964
No 288
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=59.28 E-value=20 Score=40.10 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHhhhCCEEEEeCCccCcccccccccC------CCCcceEEEccCceee
Q 014091 298 EIVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~I~Id~d~~~~ 340 (431)
.-++++|+||++|+...+.....|..+ .++.|+|.||+.....
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~t 250 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRS 250 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCch
Confidence 345899999999998765433222211 1367999999765543
No 289
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=59.12 E-value=14 Score=40.30 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHh-----cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCC--CCcceeecCCCCC
Q 014091 221 LEAAVEATADFLNK-----AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHH--PHFIGTYWGAVSS 293 (431)
Q Consensus 221 ~~~~~~~~~~~L~~-----a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~h--p~~~G~~~G~~~~ 293 (431)
-+++++.+++.|++ .++..++.|.+. .......|+..+|.|-+....+-...+... ...+|. ....
T Consensus 75 WDEAld~IA~kL~~i~~~gp~~ia~~~g~~~----~~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~--~~~~- 147 (679)
T cd02763 75 WEEAFSIATKRLKAARATDPKKFAFFTGRDQ----MQALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGG--SFWE- 147 (679)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCcc----HHHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCC--CCCC-
Confidence 46677777777764 233455556543 233556788888877544322111100000 011121 0111
Q ss_pred HHHHHHhhhCCEEEEeCCccCccc-cc--cccc-CCCCcceEEEccCceee
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYS-SV--GYSL-LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~-~~--~~~~-~~~~~~~I~Id~d~~~~ 340 (431)
....-+++||+||++|+...... .. .+.. ..++.|+|.||+.....
T Consensus 148 -~~~~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~t 197 (679)
T cd02763 148 -FGGPDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGY 197 (679)
T ss_pred -CChhHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcc
Confidence 11234679999999998543211 11 1111 12467999999776544
No 290
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=58.96 E-value=24 Score=40.77 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCH
Q 014091 221 LEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (431)
Q Consensus 221 ~~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~ 294 (431)
-+++++.+++.|.. ..+...+.+.+....-......+|...+|.+.+....--+-.|.-.|...|.. ... .
T Consensus 162 WDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~--t~~-~ 238 (1235)
T TIGR01580 162 WQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ--TDV-P 238 (1235)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhheecC--CCC-C
Confidence 45667777666542 34434443433321111223457899999886553321122233345544431 111 1
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceeec
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~~ 341 (431)
.. .-+.++|+||++|+......+..+.. ..++.|+|.||++.....
T Consensus 239 e~-~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA 288 (1235)
T TIGR01580 239 ES-ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIA 288 (1235)
T ss_pred Cc-hhhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhh
Confidence 11 23569999999999875443211111 125789999999976553
No 291
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.75 E-value=19 Score=38.85 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcC------CCEEEeCCccch--hchHHHHHHHHHHhCCCeEecC-CCcccCCCCCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKAV------KPVLVGGPNIRV--AKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~------rpvI~~G~g~~~--~~a~~~l~~lae~~~~Pv~tt~-~gkg~~~~~hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++.+ ...++.|.+... ......+.+|++.+|.++.... ...+....-.+..+|.. ..
T Consensus 80 WDeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~--~~ 157 (617)
T cd02770 80 WDEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAA--AS 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecC--CC
Confidence 5678888888887632 223444544321 1134567788888875432110 01111111223334431 11
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCccccc---ccccC----CCCcceEEEccCceee
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSSV---GYSLL----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~~---~~~~~----~~~~~~I~Id~d~~~~ 340 (431)
+. . ..-+++||+||++|+...+.... .+..+ .++.|+|.||+.....
T Consensus 158 ~~-~-~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~t 211 (617)
T cd02770 158 GS-S-LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDT 211 (617)
T ss_pred CC-C-HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCcc
Confidence 11 1 23457899999999886533221 01111 2478999999887644
No 292
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=58.24 E-value=49 Score=31.36 Aligned_cols=101 Identities=22% Similarity=0.035 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC-------CceEEecCchhHHH------------Hhhhhhhhhc
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG------------YAADGYARSR 88 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~------------~~A~gyar~t 88 (431)
...+.+++.|++.|-=++||.-++..+.++|+.+.-+ .+..+..-.+.+.. ++.+-.+..-
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 4578899999999888888988888888888776421 23333333322111 1111111111
Q ss_pred C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 89 G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 89 g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+ --+++..|..|-+ ..+.++..|+..+.|+|.||+.....
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 2 3455666677766 68888999999999999999876544
No 293
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=57.17 E-value=59 Score=31.60 Aligned_cols=101 Identities=21% Similarity=0.022 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC-------CceEEecCchhHHHH------------hhhhhhh-h
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAGY------------AADGYAR-S 87 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-------~i~~v~~~hE~~A~~------------~A~gyar-~ 87 (431)
...+.+++.|++.|-=++||.-++..+.++|+.+.-+ .+..+..-.+.+... ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 3456788888888887889988888888788775322 122222222211111 1111122 2
Q ss_pred cCccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 88 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 88 tg~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+.--+++..|..|-+ ..+.++..|+.-+.++|.||+.....
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 223456666777776 68889999999999999999875443
No 294
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=56.82 E-value=43 Score=30.42 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
....+++|+++|.+. ++-++++|..- .+...+.++|+++|.+.++.-.=-|.+ .+.. .+.
T Consensus 45 T~~~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~RWlgGtL---------------TN~~-~~~ 105 (196)
T TIGR01012 45 TDERLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGRFTPGTF---------------TNPM-QKA 105 (196)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCeeCCCCC---------------CCcc-ccc
Confidence 345677777777653 44477888644 367889999999999987642211222 2211 122
Q ss_pred hhhCCEEEEeCCccCc
Q 014091 300 VESADAYVFVGPIFND 315 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~ 315 (431)
+.+.|+||+++..-+.
T Consensus 106 ~~~Pdlliv~dp~~~~ 121 (196)
T TIGR01012 106 FREPEVVVVTDPRADH 121 (196)
T ss_pred cCCCCEEEEECCcccc
Confidence 5689999999866543
No 295
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=56.13 E-value=13 Score=35.82 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCcCHHHHHHHHHhh--CCCCCEEEecCChhhhhccccc
Q 014091 389 EPLRVNVLFKHIQDM--LSGDTAVIAETGDSWFNCQKLR 425 (431)
Q Consensus 389 ~~l~~~~~~~~L~~~--l~~~~ivv~D~G~~~~~~~~~~ 425 (431)
..+.+..+++.|++. +++++++++|+|.+..+...+.
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~ 62 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVN 62 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCC
Confidence 348899999999998 5889999999999876655443
No 296
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=56.08 E-value=21 Score=33.02 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
..+.++.+.++++.+ .|+.|++|+|++. +.+..|.+++|+--+..
T Consensus 154 a~eg~~~l~~li~~a~gri~Im~GaGV~~----~N~~~l~~~tg~~e~H~ 199 (241)
T COG3142 154 ALEGLDLLKRLIEQAKGRIIIMAGAGVRA----ENIAELVLLTGVTEVHG 199 (241)
T ss_pred hhhhHHHHHHHHHHhcCCEEEEeCCCCCH----HHHHHHHHhcCchhhhh
Confidence 355678888999877 7999999999964 77888888888765443
No 297
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=55.98 E-value=8.3 Score=35.43 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceee
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~ 340 (431)
+.+.+.++|++|++|+++.......+-.. ..+.++|.|+.++...
T Consensus 163 ~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 163 ALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 34455679999999999987654333221 2467899999887644
No 298
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=55.94 E-value=32 Score=36.66 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=29.3
Q ss_pred HhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceeec
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~~ 341 (431)
-+.+||+||++|+...+.....+..+ .++.|+|.||+......
T Consensus 156 D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta 202 (567)
T cd02765 156 DWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTA 202 (567)
T ss_pred HHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcch
Confidence 35799999999998754432222211 25789999998876553
No 299
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=55.56 E-value=45 Score=32.28 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCC--C-----ceEEecCch------------hHHHHhhh-hhhhh
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP--E-----LNLVGCCNE------------LNAGYAAD-GYARS 87 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~--~-----i~~v~~~hE------------~~A~~~A~-gyar~ 87 (431)
...+.+++.|++.|-=++||.-++..+...|+.+.-+ + ++.+..-.+ .......+ .....
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 3567788999988888899998888777788653211 1 111111111 11111111 11112
Q ss_pred cCccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 014091 88 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 88 tg~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
+--=+++..|..|.+ +.+.++..|+..+.|+|.||+.+..
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 212344444455555 6888999999999999999986543
No 300
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.50 E-value=24 Score=35.88 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCc
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGK 273 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gk 273 (431)
....-+++..|++-.+-++++.....+..|.++|+.|+++.++||+....++
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~ 165 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK 165 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC
Confidence 3456677888887666677778888888999999999999999999874333
No 301
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=55.38 E-value=5.1 Score=40.72 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHh---cCCC--EEEeCC-ccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCC-Cccee--ecCC
Q 014091 220 GLEAAVEATADFLNK---AVKP--VLVGGP-NIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP-HFIGT--YWGA 290 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~---a~rp--vI~~G~-g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp-~~~G~--~~G~ 290 (431)
.-+++++.+++.|++ ...| +++.+. +.......-.+.+|++.++-|-+......+..+..+. ..+|. ..+.
T Consensus 21 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (432)
T PF00384_consen 21 SWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGP 100 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSS
T ss_pred cHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCc
Confidence 356788888888776 2333 332222 3332345566889999999984433322221111000 01111 0011
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCcccccc-ccc----CCCCcceEEEccCceee
Q 014091 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVG-YSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 291 ~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~-~~~----~~~~~~~I~Id~d~~~~ 340 (431)
..+ ...+-++++|+||++|+...+..... +.. ..++.|+|.||+.....
T Consensus 101 ~~~-~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~ 154 (432)
T PF00384_consen 101 AFG-NPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPT 154 (432)
T ss_dssp SCC-SHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HH
T ss_pred ccc-cccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchh
Confidence 111 12235789999999998876444322 111 12368999999887643
No 302
>PRK05899 transketolase; Reviewed
Probab=55.34 E-value=66 Score=34.77 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=52.0
Q ss_pred EEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Ccc
Q 014091 92 ACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NLG 166 (431)
Q Consensus 92 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~~ 166 (431)
.+++..|=|..+. .-++..|...+.|.+++.-+...-...... . .. ...|....++.+--...+++ +++
T Consensus 152 ~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~--~-~~---~~~~~~~~~~a~G~~~~~VdG~d~~ 225 (624)
T PRK05899 152 YTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPT--E-GW---FTEDVKKRFEAYGWHVIEVDGHDVE 225 (624)
T ss_pred eEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccc--c-cc---ccccHHHHhccCCCeEEEECCCCHH
Confidence 3444457776643 236778888898844444332221111110 0 01 11356778888865566776 555
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 167 DAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++. +|++.|...++|+.|.+...-
T Consensus 226 ~l~----~al~~a~~~~~P~vI~v~t~k 249 (624)
T PRK05899 226 AID----AAIEEAKASTKPTLIIAKTII 249 (624)
T ss_pred HHH----HHHHHHHhcCCCEEEEEEeEe
Confidence 554 445555444689999998654
No 303
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=55.30 E-value=25 Score=36.32 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH-hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-+++++.+++.|++.+.-+.+.|.+.........+.+|++. ++.+-+... +...+.. .+... +.... .. +-
T Consensus 71 WdeAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~----~~~~~-~~~~~-~~-~d 142 (472)
T cd02771 71 WNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAE----ILRNG-PIYIP-SL-RD 142 (472)
T ss_pred HHHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhh----hhccc-CCCCC-CH-HH
Confidence 57889999999988763333444333222344567788875 665543211 1111100 01100 11111 12 34
Q ss_pred hhhCCEEEEeCCccCccc
Q 014091 300 VESADAYVFVGPIFNDYS 317 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~~~ 317 (431)
++++|+||++|+.+.+..
T Consensus 143 i~~ad~il~~G~n~~~~~ 160 (472)
T cd02771 143 IESADAVLVLGEDLTQTA 160 (472)
T ss_pred HHhCCEEEEEeCCccccc
Confidence 679999999999875433
No 304
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=55.28 E-value=7.4 Score=40.18 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCC--CCCcceeecCCCCC
Q 014091 221 LEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEH--HPHFIGTYWGAVSS 293 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~--hp~~~G~~~G~~~~ 293 (431)
-+++++.+++.|++.+ +-+++.|+... ....+.+|+..+|.+-+.+......-+.. .....|.+ +.
T Consensus 76 WdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~----~~ 148 (454)
T cd02755 76 WDEALQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSF----GG 148 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhcc----CC
Confidence 5678888888887542 22333333221 23467889888887743322111000000 00111111 11
Q ss_pred HHHHHHhhhCCEEEEeCCccCccccc-cccc----CCCCcceEEEccCceee
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSSV-GYSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~~-~~~~----~~~~~~~I~Id~d~~~~ 340 (431)
....-+++||+||++|+.+.+.... .+.. ..++.|+|.||+.....
T Consensus 149 -~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~t 199 (454)
T cd02755 149 -EVNPDFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSEL 199 (454)
T ss_pred -CCCcchhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 1123467999999999987544311 1111 12467999999876544
No 305
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=55.07 E-value=9.5 Score=37.84 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHHHhhhCCEEEEeCCccCcccccccccC-CCCcceEEEccCce
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRV 338 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~I~Id~d~~ 338 (431)
+.+.+++||++|+||+++..+........ .++.++|.||.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 45567899999999999875543332211 24678888888765
No 306
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=53.80 E-value=64 Score=28.42 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+.+.+++++++|.+++| +++.|.|....-+.....+| .++|.++...
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~ 65 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRL-MHLGLNVYVV 65 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHH-HhCCCeEEEe
Confidence 35689999999999977 67778876543333333333 4568887763
No 307
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=53.42 E-value=1e+02 Score=27.02 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHH--hhhc-----CCCceEEecC---chhHHHHhhhhhh---------hhc
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLIA-----EPELNLVGCC---NELNAGYAADGYA---------RSR 88 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~--al~~-----~~~i~~v~~~---hE~~A~~~A~gya---------r~t 88 (431)
..++.|.+.+.+.+.=++||.-++......- .|.. ..++..+... +|..+..--.+|. ..+
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 4566676766666666778877666543221 1221 1244444322 2322221112222 122
Q ss_pred CccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 89 GVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 89 g~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.--++++.|-.|.+ +.+..+..|+..++|+|.||+.....
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 23455555555555 89999999999999999999875443
No 308
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=53.11 E-value=64 Score=33.76 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh-chH---HHHHHHHHHhCCCeEecCCCcccCCCCC-CCcceeecCCCCC---
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA-KAQ---KAFIELADATGYPIAIMPSGKGLVPEHH-PHFIGTYWGAVSS--- 293 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~-~a~---~~l~~lae~~~~Pv~tt~~gkg~~~~~h-p~~~G~~~G~~~~--- 293 (431)
.+.++++++++.++++++|+.|.|..++ ++. ..+..|+-.+|-- .-.|-|++.... +-.-.++ -..++
T Consensus 266 ~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~---g~~G~g~~~~~~~~~ik~l~-~~g~Np~~ 341 (501)
T cd02766 266 AEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNI---GVPGGGAFYSNSGPPVKALW-VYNSNPVA 341 (501)
T ss_pred HHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCC---CCCCCcccCCCCCCCeeEEE-EeCCCHHh
Confidence 4578999999999999999999887643 222 3344444444421 011223332211 1111111 11111
Q ss_pred -----HHHHH-HhhhCCEEEEeCCccCccc
Q 014091 294 -----SFCGE-IVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 294 -----~~~~~-~~~~aD~vl~lG~~~~~~~ 317 (431)
....+ +++..|+++++...+++..
T Consensus 342 ~~p~~~~~~~a~l~~~~f~Vv~D~~~teTa 371 (501)
T cd02766 342 QAPDSNKVRKGLAREDLFVVVHDQFMTDTA 371 (501)
T ss_pred hCCCHHHHHHHHhcCCCeEEEEecCcCchH
Confidence 23445 6677899999998776543
No 309
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=52.75 E-value=63 Score=29.53 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 222 EAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 222 ~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
...+..|++.|... +.-++++|..- .+.+.+.++|+++|.+.++.- |+| |.+.+... +..
T Consensus 52 ~~~L~~A~~~i~~~~~~~ILfVgTk~---~~~~~v~k~A~~~g~~~v~~R------------Wlg---G~LTN~~~-~~~ 112 (204)
T PRK04020 52 DERIRIAAKFLSRYEPEKILVVSSRQ---YGQKPVQKFAEVVGAKAITGR------------FIP---GTLTNPSL-KGY 112 (204)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecCc------------cCC---CcCcCcch-hcc
Confidence 45677788877763 34477776533 377899999999999877642 222 22222222 223
Q ss_pred hhCCEEEEeCCccCcccccccc-cCCCCcceEEEccCceee
Q 014091 301 ESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~I~Id~d~~~~ 340 (431)
...|+||++...-+......-. ...|-.-++.-|.|+..+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~V 153 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNV 153 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccC
Confidence 4899999999766533322211 112322334446666544
No 310
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=52.16 E-value=19 Score=40.03 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhh
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~ 301 (431)
+.+++++++.|++++ .|..++.... +..-.+++|++.+|.+.+..- ++- +...-.-+.-.+ |.. ....-+-++
T Consensus 297 e~A~deA~e~lk~~~--aI~~S~~~TN-EE~YllqKLar~lgtnnvD~~-aR~-~~~~~~~l~~~~-G~~-~t~sl~DI~ 369 (819)
T PRK08493 297 EKAFKEAVEAFKEAK--AIKFNSFITN-EEALILQRLKKKFGLKLINEE-ALK-FQQFLKVFSEVS-GKS-YSANLEDIK 369 (819)
T ss_pred HHHHHHHHHHHhhCC--EEEecCCCCH-HHHHHHHHHHHHhCCCCccch-hhh-hhHHHHHHHHhc-CCC-CCCCHHHHh
Q ss_pred hCCEEEEeCCccCcccccccccCC-----CCcceEEEcc
Q 014091 302 SADAYVFVGPIFNDYSSVGYSLLI-----KKEKAIIVQP 335 (431)
Q Consensus 302 ~aD~vl~lG~~~~~~~~~~~~~~~-----~~~~~I~Id~ 335 (431)
++|+||++|+...+....-+..+. .+.++|.+|+
T Consensus 370 ~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidP 408 (819)
T PRK08493 370 TSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHP 408 (819)
T ss_pred hCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEec
No 311
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=51.95 E-value=35 Score=37.85 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhcC-----CCEE-EeCC-c--cchhchHHHHHHHHHHhCCCeEec-CCCcccCCCCCCCcceeecC
Q 014091 220 GLEAAVEATADFLNKAV-----KPVL-VGGP-N--IRVAKAQKAFIELADATGYPIAIM-PSGKGLVPEHHPHFIGTYWG 289 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~-----rpvI-~~G~-g--~~~~~a~~~l~~lae~~~~Pv~tt-~~gkg~~~~~hp~~~G~~~G 289 (431)
.-+++++.+++.|++.+ .-+. ..++ + ...........+|+..+|-+.-+. ...-+.--.-.+..+|.. .
T Consensus 75 SWDEAl~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~-~ 153 (770)
T TIGR00509 75 SWDEALDLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLHNASTLLQRMLNLLGGYVGHAGDYSTGAAQVIMPHVVGDM-E 153 (770)
T ss_pred cHHHHHHHHHHHHHHHHHhcCChhheecccCcccCCcccccHHHHHHHHHhcCCCcCCCCCcchhhHhhccCceeecc-c
Confidence 35678888888887532 1222 2211 1 111122345688999887543221 000000000012223321 1
Q ss_pred CCCC-HHHHHHhhhCCEEEEeCCccCccccccc--------ccC----CCCcceEEEccCceeec
Q 014091 290 AVSS-SFCGEIVESADAYVFVGPIFNDYSSVGY--------SLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 290 ~~~~-~~~~~~~~~aD~vl~lG~~~~~~~~~~~--------~~~----~~~~~~I~Id~d~~~~~ 341 (431)
..+. ......+++||+||++|+...+.....| ..+ .++.|+|.||+......
T Consensus 154 ~~g~~~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA 218 (770)
T TIGR00509 154 VYEQQTTWPVILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETA 218 (770)
T ss_pred ccCCcCCcHHHHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcch
Confidence 1111 1122236899999999988654432111 111 24789999998876553
No 312
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=51.92 E-value=12 Score=36.01 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
++.+++++.++|+++++.|++.|.|...
T Consensus 5 ~~~~l~~l~~~i~~~~~ivvlTGAGiS~ 32 (285)
T PRK05333 5 DPAALDALQDFVERHPRLFVLTGAGIST 32 (285)
T ss_pred cHHHHHHHHHHHHhCCcEEEEeCCcccc
Confidence 5678889999999999999999999864
No 313
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=51.79 E-value=29 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 237 rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
|.++++|+|+.++-..+.++++++..|+++-
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~ 32 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLE 32 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4578888887776788999999999999864
No 314
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=51.71 E-value=21 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=25.7
Q ss_pred cccHHHHHH------HHHHHcCCCEEEecCCCchHHHHHhhhc
Q 014091 26 VGTLGRHLA------RRLVEIGAKDVFSVPGDFNLTLLDHLIA 62 (431)
Q Consensus 26 ~~~~a~~l~------~~L~~~GV~~vFgvpG~~~~~l~~al~~ 62 (431)
.+++++++. +.|+++||++++| ...+|-+|+.+
T Consensus 2 ~~tVgeiv~~~p~~a~vf~~~gIDfCCg----G~~~L~eA~~~ 40 (56)
T PF04405_consen 2 DQTVGEIVAEDPRAARVFRKYGIDFCCG----GNRSLEEACEE 40 (56)
T ss_pred cCCHHHHHHHChHHHHHHHHcCCcccCC----CCchHHHHHHH
Confidence 456777654 7899999999998 55778888865
No 315
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=51.37 E-value=54 Score=27.39 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCC--CEEEeCCccchh-----------chHHHHHHHHHHhCCCeEecCC---CcccCCCC-----
Q 014091 221 LEAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMPS---GKGLVPEH----- 279 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~r--pvI~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~~---gkg~~~~~----- 279 (431)
..+.++-+..++..... -|++.+.|+... +..+.+.+|.+..+++++.-.. .+|+.+++
T Consensus 16 ~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~aa~~RGl~~~~~~~~~ 95 (127)
T TIGR03012 16 ASSAYQFAQALLAKGHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVAAALRRGVVDEEEASRL 95 (127)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHHHHHHcCCCchhHHhhc
Confidence 45677777777776555 388888888432 2457788888888888877543 57877652
Q ss_pred ----CCCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 280 ----HPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 280 ----hp~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
..+..|.- ..+-....+++.++|-||.+
T Consensus 96 ~~~~~~l~~~~~--i~~l~eL~~~~~~aDrvi~F 127 (127)
T TIGR03012 96 QISHGNLAPGFE--LSGLGELAEAALTADRLVQF 127 (127)
T ss_pred ccccccccCCeE--EcCHHHHHHHHHhCCeeEeC
Confidence 13444442 23445778899999999864
No 316
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.34 E-value=96 Score=32.38 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh-c---hHHHHHHHHHHhC---CC---eEec-----CCC---cccCCCCCCCc
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA-K---AQKAFIELADATG---YP---IAIM-----PSG---KGLVPEHHPHF 283 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~-~---a~~~l~~lae~~~---~P---v~tt-----~~g---kg~~~~~hp~~ 283 (431)
.+.+++++++|.++++++|+.|.+..+. . ....+..|+..+| .| +... ..| .+.++...|-+
T Consensus 265 ~~~i~~lA~~~~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~G~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 344 (512)
T cd02753 265 AEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTGNIGRPGTGVNPLRGQNNVQGACDMGALPNVLPGY 344 (512)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCchhhhhhhHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCCCCCCcccccCCccCCce
Confidence 4568899999999999999999887643 2 2334444555544 12 1110 001 01122222211
Q ss_pred ceeecCCCC--------CHHHHHHhhhCCEEEEeCCccCccc
Q 014091 284 IGTYWGAVS--------SSFCGEIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 284 ~G~~~G~~~--------~~~~~~~~~~aD~vl~lG~~~~~~~ 317 (431)
+.++.-..+ .....++++..|+++++...+++..
T Consensus 345 i~~l~~~~~Np~~~~p~~~~~~~al~~~~~~V~~d~~~t~ta 386 (512)
T cd02753 345 VKALYIMGENPALSDPNTNHVRKALESLEFLVVQDIFLTETA 386 (512)
T ss_pred eEEEEEecCChhhcCcCHHHHHHHHhCCCeEEEEecccCcch
Confidence 222111111 1235677888999999987776543
No 317
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=51.01 E-value=55 Score=26.76 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=29.8
Q ss_pred cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 91 GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 91 gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
-++++.|-+|.+ ..+..+..|+..++|+|.||......
T Consensus 49 d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 49 DVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 455555667666 68899999999999999999976544
No 318
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=50.90 E-value=41 Score=37.46 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchh---ch--HHHHHHHHHHhCCCeEe-cCCCcccCCCCCCCcceeec
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVA---KA--QKAFIELADATGYPIAI-MPSGKGLVPEHHPHFIGTYW 288 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~---~a--~~~l~~lae~~~~Pv~t-t~~gkg~~~~~hp~~~G~~~ 288 (431)
-+++++.+++.|++. +...++.|.|.... .. ...+.+|+..+|-+.-. .....+....-+...+|.
T Consensus 125 WdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~-- 202 (797)
T TIGR02166 125 WDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLNQYGSYSTAQINEAMPYTYGI-- 202 (797)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccccCCCeecchhhcccceeEee--
Confidence 567888888887653 22333455443210 01 12577888877743221 110111111122333442
Q ss_pred CCCCCHHHHHHhhhCCEEEEeCCccCcccc---cc---cccC--CCCcceEEEccCcee
Q 014091 289 GAVSSSFCGEIVESADAYVFVGPIFNDYSS---VG---YSLL--IKKEKAIIVQPHRVT 339 (431)
Q Consensus 289 G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~---~~---~~~~--~~~~~~I~Id~d~~~ 339 (431)
+..+. .. .-+++||+||++|+...+... .. +... .++.|+|.||+....
T Consensus 203 ~~~~~-~~-~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~ 259 (797)
T TIGR02166 203 SADGS-SL-DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTD 259 (797)
T ss_pred cCCCC-CH-HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCc
Confidence 11111 12 346789999999998654322 11 1111 246899999988754
No 319
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=50.69 E-value=82 Score=33.39 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
.+++++++.+.|++.++.+|+....+..-++...+.++.+++|..|.. .+|...+-..|.. .....+..
T Consensus 40 ~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~------~ip~r~~~~yg~~-----~~~i~~~~ 108 (539)
T TIGR00644 40 MEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDY------YIPNRITEGYGLS-----PEALREAI 108 (539)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEE------EeCCCCcccCCCC-----HHHHHHHH
Confidence 466788899999998888888777666556778899999999988743 2344444333321 11222222
Q ss_pred -hhCCEEEEeCCccCcccccccccCCCCcceEEEccC
Q 014091 301 -ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPH 336 (431)
Q Consensus 301 -~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d 336 (431)
...|++|++.+--.+..-...- ...+.++|.+|.+
T Consensus 109 ~~~~~LiI~vD~G~~~~~~~~~~-~~~g~~vIviDHH 144 (539)
T TIGR00644 109 ENGVSLIITVDNGISAHEEIDYA-KELGIDVIVTDHH 144 (539)
T ss_pred hcCCCEEEEeCCCcccHHHHHHH-HhcCCCEEEECCC
Confidence 3579999998765543211110 0124566777643
No 320
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=50.66 E-value=18 Score=28.97 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=24.8
Q ss_pred HHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 230 DFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 230 ~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
..+...=.-+|++|+.. -.+.+.++|+..++||+.|+.
T Consensus 56 ~a~~~~i~~iIltg~~~----~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 56 AAIEAGIACIILTGGLE----PSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp HHCCTTECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred HHHHhCCCEEEEeCCCC----CCHHHHHHHHHCCCEEEEECC
Confidence 33444346688888544 568999999999999999875
No 321
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=50.42 E-value=50 Score=33.10 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+.+ .+|++|+.|..+...+..+.+.+..++.++.+.. +.+ + +.+|-.-.+- .+.+.+
T Consensus 13 ~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~---v-~~~p~~~~v~-------~~~~~~~ 80 (376)
T cd08193 13 SLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTV-FDD---V-EADPPEAVVE-------AAVEAAR 80 (376)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-ECC---C-CCCcCHHHHH-------HHHHHHH
Confidence 34555566654 5899999888765555677788877777775532 111 1 2234333221 122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 81 ~~~~D~IIaiGG 92 (376)
T cd08193 81 AAGADGVIGFGG 92 (376)
T ss_pred hcCCCEEEEeCC
Confidence 37899999993
No 322
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=50.13 E-value=94 Score=31.11 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
.+.++.++..+.+.+-|||.=+++....+..+.++++++..|+.
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45788888888887778877666666667889999999998865
No 323
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=30 Score=30.20 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.8
Q ss_pred hcCCC-EEEeCCccchh----chHHHHHHHHHHhCCCeEecCCCcc
Q 014091 234 KAVKP-VLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 234 ~a~rp-vI~~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
-.++| +++.|.-+.-. -..++..+||+++|+|++.|....|
T Consensus 121 YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 121 YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 35677 77788766432 2457889999999999999987655
No 324
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=49.76 E-value=92 Score=25.59 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhCCCeEecCCCc-ccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCcc-CcccccccccCCCC
Q 014091 250 KAQKAFIELADATGYPIAIMPSGK-GLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF-NDYSSVGYSLLIKK 327 (431)
Q Consensus 250 ~a~~~l~~lae~~~~Pv~tt~~gk-g~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~-~~~~~~~~~~~~~~ 327 (431)
=+.+.|++-|++.|+.+.....|. |+.. + --.+-+..+|+||++|... .+.. .+.+
T Consensus 20 lAAeaL~kAA~~~G~~i~VE~qg~~g~~~---~-------------lt~~~i~~Ad~VIia~d~~~~~~~------rF~g 77 (114)
T PRK10427 20 MAAERLEKLCQLEKWGVKIETQGALGTEN---R-------------LTDEDIRRADVVLLITDIELAGAE------RFEH 77 (114)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCcCC---C-------------CCHHHHHhCCEEEEEecCCCCchh------hhCC
Confidence 467999999999999998766653 2111 1 1124567999999999765 3222 1235
Q ss_pred cceEEEccCceeecCCCccccccHHHHHHHHHHHhcc
Q 014091 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRK 364 (431)
Q Consensus 328 ~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~~ 364 (431)
.+++.++.+..-. |+..+|++..+.+..
T Consensus 78 k~v~~~s~~~ai~---------d~~~vl~~a~~~~~~ 105 (114)
T PRK10427 78 CRYVQCSIYAFLR---------EPQRVMSAVRKVLSA 105 (114)
T ss_pred CeEEEecHHHHHH---------HHHHHHHHHHHHHhC
Confidence 5778777654311 567777777665543
No 325
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.65 E-value=60 Score=32.69 Aligned_cols=76 Identities=9% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+++ .||++|+.|......+..+.+.+..+..++.+.. +. ++-| +|-.--+. .+.+.+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~-f~--~v~~--np~~~~v~-------~~~~~~~ 85 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVI-YD--GTQP--NPTTENVA-------AGLKLLK 85 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCCC--CcCHHHHH-------HHHHHHH
Confidence 44555555554 4788988887776666777888888887875421 11 1111 23222221 222223
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 86 ~~~~D~IiaiGG 97 (383)
T PRK09860 86 ENNCDSVISLGG 97 (383)
T ss_pred HcCCCEEEEeCC
Confidence 36999999995
No 326
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=48.46 E-value=2.5e+02 Score=29.17 Aligned_cols=132 Identities=13% Similarity=0.135 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHh-hheeeEEEcCCcchHHHHHHHHHHH
Q 014091 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-AITCSQAVVNNLGDAHELIDTAIST 178 (431)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~k~~~~v~~~~~~~~~i~~A~~~ 178 (431)
....++.-+..-. ..+|||+|||..+-. ..++.++ ...-|-...-+++++...+++|+..
T Consensus 62 ~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~------------------~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 62 DGLELLKEIKSRD-PDLPVIVMTGHGDID------------------TAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred chHHHHHHHHhhC-CCCCEEEEeCCCCHH------------------HHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 3445555555544 789999999874322 1222222 2333444455688899999999987
Q ss_pred hhhCC--CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccc-hhchHHHH
Q 014091 179 ALKES--KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAF 255 (431)
Q Consensus 179 A~~~~--GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~-~~~a~~~l 255 (431)
..... .. ..+..- .. .... .. ..+.-..+.+.++.+..+.-||++.|.-.. -.-....|
T Consensus 123 ~~~~~e~~~---~~~~~~-----~~----~~~l-iG-----~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~I 184 (464)
T COG2204 123 RELQRENRR---SLKRAK-----SL----GGEL-VG-----ESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAI 184 (464)
T ss_pred hhhhhhhhh---hhhccc-----cc----cCCc-ee-----cCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH
Confidence 65421 11 111100 00 0000 11 112456788888889999999999995332 12234566
Q ss_pred HHHHHHhCCCeEe
Q 014091 256 IELADATGYPIAI 268 (431)
Q Consensus 256 ~~lae~~~~Pv~t 268 (431)
.+.+.+.+-|++.
T Consensus 185 H~~S~R~~~PFVa 197 (464)
T COG2204 185 HQASPRAKGPFIA 197 (464)
T ss_pred HhhCcccCCCcee
Confidence 6777777778887
No 327
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=47.84 E-value=21 Score=35.75 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhch----HHHHHHHHHHhC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKA----QKAFIELADATG 263 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a----~~~l~~lae~~~ 263 (431)
...++.|.++|+|+|++|.++..... ...+..|++.++
T Consensus 212 ~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~ 253 (366)
T cd02774 212 HLFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNNE 253 (366)
T ss_pred hHHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhhc
Confidence 35678899999999999999865322 344556666643
No 328
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.76 E-value=19 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=22.4
Q ss_pred hhCCEEEEeCCccCcccccccccCCCCcceEEEccCce
Q 014091 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~ 338 (431)
.++|++|++|+.+..-. -+-++|++.+|....
T Consensus 39 ~dAeLviV~G~sipnd~------~l~GKkv~i~d~~~A 70 (103)
T COG3925 39 NDAELVIVFGSSIPNDS------ALNGKKVWIGDIERA 70 (103)
T ss_pred CcccEEEEeccccCCCc------cccCceEEEecHHHH
Confidence 48999999998876322 123667888877654
No 329
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=47.56 E-value=15 Score=31.19 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=27.6
Q ss_pred CEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 238 pvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.|+++|..+..++...++++|+++++++.+.
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~ 41 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPVY 41 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCcee
Confidence 4788999999999999999999999987654
No 330
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=47.02 E-value=39 Score=29.24 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchHH-----HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEe
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLT-----LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVT 96 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~-----l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t 96 (431)
+++.++..++-..+.|+++||.+-.++-+.+-.+ +++.++. .+++ |+++
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~-~~~~------------------------viIa- 61 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEA-RGAD------------------------VIIA- 61 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTT-TTES------------------------EEEE-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhcc-CCCE------------------------EEEE-
Confidence 3467899999999999999999998888765432 2222221 1232 3444
Q ss_pred CCcchHHHHHHHHHhhhcCCcEEEEe
Q 014091 97 FTVGGLSVLNAIAGAYSENLPVICIV 122 (431)
Q Consensus 97 ~GpG~~n~~~gl~~A~~~~~Pvl~I~ 122 (431)
+-|..|.++|+..+.. ..|||-+-
T Consensus 62 -~AG~~a~Lpgvva~~t-~~PVIgvP 85 (150)
T PF00731_consen 62 -VAGMSAALPGVVASLT-TLPVIGVP 85 (150)
T ss_dssp -EEESS--HHHHHHHHS-SS-EEEEE
T ss_pred -ECCCcccchhhheecc-CCCEEEee
Confidence 3455677888887777 78888874
No 331
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=46.94 E-value=1.3e+02 Score=32.08 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEEeCCcchH---HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcch
Q 014091 92 ACVVTFTVGGL---SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGD 167 (431)
Q Consensus 92 v~~~t~GpG~~---n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~ 167 (431)
.+++..|=|.+ -..-++..|...+.|+++|.=+......+.-......+. ..+....|+.+ .|... .-+..+
T Consensus 142 ~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~---~~~~~~~~~a~-G~~~~~~vdG~d 217 (580)
T PRK05444 142 KVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLA---RLRSSTLFEEL-GFNYIGPIDGHD 217 (580)
T ss_pred eEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhc---cccHHHHHHHc-CCCeeeeeCCCC
Confidence 34444566766 345677777777799988876543321111000000000 01233456655 34333 213333
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 168 AHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 168 ~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+.+.+|++.+...++|+.|.+---
T Consensus 218 -~~~l~~al~~a~~~~~P~lI~~~T~ 242 (580)
T PRK05444 218 -LDALIETLKNAKDLKGPVLLHVVTK 242 (580)
T ss_pred -HHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3445667776666678998887643
No 332
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=46.67 E-value=76 Score=31.93 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHH--hcCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 224 AVEATADFLN--KAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 224 ~~~~~~~~L~--~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
.++++.+.+. ..||++|+.+.+....+..+.+.+..+..++.+
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~ 60 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEY 60 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeE
Confidence 4556666666 458999999999887777788888888887664
No 333
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=45.74 E-value=39 Score=30.97 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcC-CCEEEeCCccchhchHHHHHHHHHH-hCCCeEecCCCcc
Q 014091 222 EAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKG 274 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~-rpvI~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg 274 (431)
+.++-++++++++.+ +|.+++|.-+..-++.+.=.+|.+. .++|.+++..-||
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 457788999998875 8999999766544454444445442 4999999877665
No 334
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.42 E-value=81 Score=31.66 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHHHh-cCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~-a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+++ .+|++|+.|.+. ...+..+.+.+..++.++.+.. +. ++- .+|-.--+ ..+.+.+
T Consensus 13 ~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~-~~--~v~--~~p~~~~v-------~~~~~~~~ 80 (380)
T cd08185 13 KLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVV-FD--KVE--PNPTTTTV-------MEGAALAR 80 (380)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEE-eC--Ccc--CCCCHHHH-------HHHHHHHH
Confidence 34455555543 378999999876 3556778888888888876532 11 111 13322221 1122223
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 81 ~~~~D~IiavGG 92 (380)
T cd08185 81 EEGCDFVVGLGG 92 (380)
T ss_pred HcCCCEEEEeCC
Confidence 36999999994
No 335
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=45.40 E-value=76 Score=27.90 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCC------CCCCccee
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE------HHPHFIGT 286 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~------~hp~~~G~ 286 (431)
++.+.++++...+-.|. ++++|+-.. ..-.+++.+|-+..|+||++-.|- |.+|+ ++|...|+
T Consensus 126 EE~laEAVkAV~rLpRv~iLVLAGslMG-GkIteaVk~lr~~hgI~VISL~M~-GSVpdVADlVvtDPvqAGv 196 (218)
T COG1707 126 EEELAEAVKAVARLPRVGILVLAGSLMG-GKITEAVKELREEHGIPVISLNMF-GSVPDVADLVVTDPVQAGV 196 (218)
T ss_pred hHHHHHHHHHHhccccceeEEEeccccc-chHHHHHHHHHHhcCCeEEEeccC-CCCcchhheeecCchHhhh
Confidence 45566677777666665 555665443 246788999999999999986663 34443 34655555
No 336
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.11 E-value=73 Score=32.28 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=29.1
Q ss_pred HHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 225 ~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
++++-+.+++ .++++|+.|......+..+.+.+..+..|+.+.
T Consensus 37 ~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 37 VSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4455555543 477777777766665667778888888887654
No 337
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.93 E-value=73 Score=31.95 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+.. +.+ + +.||-.-.+ ..+.+.+
T Consensus 15 ~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~---v-~~~p~~~~v-------~~~~~~~~ 82 (377)
T cd08176 15 AIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YDG---V-KPNPTITNV-------KDGLAVFK 82 (377)
T ss_pred HHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHH
Confidence 34555555554 4788888888776556778888888887876532 211 1 123432222 1222223
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 83 ~~~~D~IIavGG 94 (377)
T cd08176 83 KEGCDFIISIGG 94 (377)
T ss_pred hcCCCEEEEeCC
Confidence 36999999995
No 338
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=44.87 E-value=70 Score=32.06 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..++-+.. +.+ + +.+|-.--+. .+.+.+
T Consensus 10 ~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~-~~~---v-~~~p~~~~v~-------~~~~~~~ 77 (375)
T cd08194 10 AVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI-FDD---V-VSEPTDESVE-------EGVKLAK 77 (375)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEE-ECC---C-CCCcCHHHHH-------HHHHHHH
Confidence 44555566653 5799999998876555667788888877776532 111 1 1233322211 122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 78 ~~~~D~IIaiGG 89 (375)
T cd08194 78 EGGCDVIIALGG 89 (375)
T ss_pred hcCCCEEEEeCC
Confidence 37999999995
No 339
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=44.57 E-value=52 Score=33.32 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--hhC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESA 303 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~--~~a 303 (431)
+++...+...+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.+|-.--+ ..+.+.+ .++
T Consensus 12 ~~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~-f~~---v-~~~p~~~~v-------~~~~~~~~~~~~ 79 (398)
T cd08178 12 PYALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEV-FSD---V-EPDPSLETV-------RKGLELMNSFKP 79 (398)
T ss_pred HHHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEE-ecC---C-CCCcCHHHH-------HHHHHHHHhcCC
Confidence 3333344456899999988776555777788888877876532 111 0 123322221 1222222 368
Q ss_pred CEEEEeCC
Q 014091 304 DAYVFVGP 311 (431)
Q Consensus 304 D~vl~lG~ 311 (431)
|+||.||.
T Consensus 80 D~IIaiGG 87 (398)
T cd08178 80 DTIIALGG 87 (398)
T ss_pred CEEEEeCC
Confidence 99999995
No 340
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=44.06 E-value=91 Score=31.76 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 225 ~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
++++.+.+++ .+|++|+.|.+....+..+.+.+..+..|+.+.
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFE 55 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEE
Confidence 4455555553 478999999887766667888887777777664
No 341
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=43.98 E-value=17 Score=36.33 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhh--h
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE--S 302 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~--~ 302 (431)
++++.+.|.+-+|++|+.|......+..+.+....++.++.+..-.. + ..+|-.-.+ ..+.+.++ +
T Consensus 11 l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~----~-~~~p~~~~v-------~~~~~~~~~~~ 78 (366)
T PF00465_consen 11 LEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDG----V-GPNPTLEDV-------DEAAEQARKFG 78 (366)
T ss_dssp GGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEE----E-SSS-BHHHH-------HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEec----C-CCCCcHHHH-------HHHHHHHHhcC
Confidence 45566666665699999998554445677888777888887743221 0 223332222 12233333 7
Q ss_pred CCEEEEeCC
Q 014091 303 ADAYVFVGP 311 (431)
Q Consensus 303 aD~vl~lG~ 311 (431)
+|+||.||.
T Consensus 79 ~D~IIaiGG 87 (366)
T PF00465_consen 79 ADCIIAIGG 87 (366)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEcCC
Confidence 999999993
No 342
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=43.94 E-value=66 Score=32.31 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+.+ .+|++|+.|..+...+..+.+.+..++.++.+.. +. ++ +.+|-.--+ ..+.+.+
T Consensus 16 ~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~-~~--~v--~~~p~~~~v-------~~~~~~~~ 83 (379)
T TIGR02638 16 AIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYEL-FD--EV--KPNPTITVV-------KAGVAAFK 83 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEE-EC--CC--CCCcCHHHH-------HHHHHHHH
Confidence 34455555543 4799999998876655778888888888876542 11 11 123322211 1122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 84 ~~~~D~IiaiGG 95 (379)
T TIGR02638 84 ASGADYLIAIGG 95 (379)
T ss_pred hcCCCEEEEeCC
Confidence 36999999994
No 343
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=43.36 E-value=33 Score=32.73 Aligned_cols=143 Identities=20% Similarity=0.181 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhcCCCceEEecC----------chhHHHHhhhhhhhhcC-ccEEEE
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRG-VGACVV 95 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~~~~i~~v~~~----------hE~~A~~~A~gyar~tg-~gv~~~ 95 (431)
=..+.++-+.+.|.+.|.-+-+...+ =+.+.|. +..++|.-. +|..-+.+=-||.-..| +..++.
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~--~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~ 115 (266)
T cd08663 38 EVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLD--PRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVLS 115 (266)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--ccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCccc
Confidence 34567888999999999998865543 2444553 456666332 33333333346544333 333333
Q ss_pred eCCcch------------HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC
Q 014091 96 TFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (431)
Q Consensus 96 t~GpG~------------~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (431)
|+--|. ....-.-+-|-.-++||++++|+...-...+. +. ++ ...+..-+.+.+++....
T Consensus 116 HT~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~------~~-p~-i~tv~vK~~~gr~aa~~~ 187 (266)
T cd08663 116 HTYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARE------LG-PG-VETVAVKEAIGRFAARCL 187 (266)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHh------hC-CC-cEEEEEecccCCCccccC
Confidence 332222 11111222344569999999998533211110 00 00 011222234455777788
Q ss_pred CcchHHHHHHHHHHHhhh
Q 014091 164 NLGDAHELIDTAISTALK 181 (431)
Q Consensus 164 ~~~~~~~~i~~A~~~A~~ 181 (431)
+|+.+.+.|+++.+.|..
T Consensus 188 ~p~~a~~~I~~~a~~Al~ 205 (266)
T cd08663 188 PPAEARALIREAAAEAVR 205 (266)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999988863
No 344
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=43.35 E-value=74 Score=31.48 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=42.0
Q ss_pred HHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhh
Q 014091 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVES 302 (431)
Q Consensus 225 ~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~ 302 (431)
++++.+.+.+ .+|++|+.|....... .+.+.+..++.++.+..... .-++.+|-.-.+- .....+.++
T Consensus 11 l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~---~~~~~~pt~~~v~------~~~~~~~~~ 80 (348)
T cd08175 11 LERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVL---PAGDLIADEKAVG------RVLKELERD 80 (348)
T ss_pred HHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeec---CCCcccCCHHHHH------HHHHHhhcc
Confidence 3344444443 4788899887775533 57788888888875532111 1112234322221 111222237
Q ss_pred CCEEEEeCC
Q 014091 303 ADAYVFVGP 311 (431)
Q Consensus 303 aD~vl~lG~ 311 (431)
+|+||.||.
T Consensus 81 ~d~IIaIGG 89 (348)
T cd08175 81 TDLIIAVGS 89 (348)
T ss_pred CCEEEEECC
Confidence 999999994
No 345
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.85 E-value=70 Score=31.68 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHHHHHHHh-cCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 226 EATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 226 ~~~~~~L~~-a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
+++.+.+++ .+|++|+.|.+... +..+.+.+..+..++.+
T Consensus 12 ~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 12 DELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeE
Confidence 344444443 58999999877754 56677777777777765
No 346
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=42.78 E-value=21 Score=31.59 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHhhhCCEEEEeCCccC
Q 014091 295 FCGEIVESADAYVFVGPIFN 314 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~ 314 (431)
.+.+.+++||++|++|+++.
T Consensus 156 ~~~~~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 156 EAIEDAEEADLLLVIGTSLQ 175 (178)
T ss_dssp HHHHHHHH-SEEEEESS-ST
T ss_pred HHHHHHHcCCEEEEEccCcE
Confidence 44557789999999999885
No 347
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.58 E-value=1.1e+02 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
.+.+++++++|.+++| +++.|.|....-+.....+| .++|.++...
T Consensus 17 ~~~~~~~~~~l~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~ 62 (179)
T TIGR03127 17 EEELDKLADKIIKAKR-IFVAGAGRSGLVGKAFAMRL-MHLGFNVYVV 62 (179)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHHHHHHHHHHHH-HhCCCeEEEe
Confidence 5679999999999876 67778776443343444444 4567766553
No 348
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=42.51 E-value=4e+02 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 224 AVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 224 ~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
..+.+++..++. +||++..-.+.. ..++.+++.+..|+|++.++.
T Consensus 389 ~a~~l~~~~~~~~~KPvv~~~~gg~---~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 389 VAKGIIEGAKKSNEKPVVAGFMGGK---SVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCc---cHHHHHHHHHhCCCCccCCHH
Confidence 345556666666 889976654321 335566666678999988764
No 349
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=42.09 E-value=50 Score=27.04 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.++++++.|.++++ +++.|.|... ....++....++++.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSG-LVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchH-HHHHHHHHHHHHcCCceEE
Confidence 47889999999876 7777888643 4556666667777766554
No 350
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.07 E-value=58 Score=31.10 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCc-------c-c--hhchHHHHHHHHHHhCCCeEecCCC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPN-------I-R--VAKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g-------~-~--~~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
+.+.+.+.++.|++...+++..|.- . . ..+..+.+++.++++|+|++|+++.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4567788889999988889988821 1 1 1245688999999999999999864
No 351
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.03 E-value=1.3e+02 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=28.3
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
++..++..++-..+.|+++||+|-.++-+.+=.
T Consensus 6 GS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRt 38 (156)
T TIGR01162 6 GSDSDLPTMKKAADILEEFGIPYELRVVSAHRT 38 (156)
T ss_pred CcHhhHHHHHHHHHHHHHcCCCeEEEEECcccC
Confidence 346788999999999999999999999886544
No 352
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=41.92 E-value=46 Score=28.08 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.++++++.+.++++ +.++|.|....-+.+.-.+|.|..++|+..
T Consensus 2 ~~~~~a~~~~~~~~-i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~ 45 (153)
T cd05009 2 DIKELAEKLKEAKS-FYVLGRGPNYGTALEGALKLKETSYIHAEA 45 (153)
T ss_pred hHHHHHHHHhccCc-EEEEcCCCCHHHHHHHHHHHHHHHhhccee
Confidence 46788999999877 566688887666778888888887788765
No 353
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.81 E-value=89 Score=31.16 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=44.6
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..++.+.. +.+ + +.||-.-.+. .+.+.+
T Consensus 10 ~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~---~-~~~p~~~~v~-------~~~~~~~ 77 (370)
T cd08551 10 AIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVI-FDG---V-EPNPTLSNVD-------AAVAAYR 77 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-ECC---C-CCCCCHHHHH-------HHHHHHH
Confidence 35566666664 4789999888775546677777777776665432 111 1 2334333221 122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 78 ~~~~d~IiaiGG 89 (370)
T cd08551 78 EEGCDGVIAVGG 89 (370)
T ss_pred hcCCCEEEEeCC
Confidence 36899999995
No 354
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=41.81 E-value=46 Score=34.37 Aligned_cols=44 Identities=27% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
.+.++++++.|.++++++|+.|.+.........+..|+..+|-.
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999874445677778888887755
No 355
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.62 E-value=47 Score=27.92 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCCcccHHHH--HHHHHHHcCCCEEEecCCCchHHHHHhhhc
Q 014091 22 GGASVGTLGRH--LARRLVEIGAKDVFSVPGDFNLTLLDHLIA 62 (431)
Q Consensus 22 ~~~~~~~~a~~--l~~~L~~~GV~~vFgvpG~~~~~l~~al~~ 62 (431)
||.-.+...+. ..+.|++.||+.||+ ||+....+.+.|.+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~-pgt~~~~i~~~l~~ 128 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFA-PGTPPEEAIADLKK 128 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEEC-cCCCHHHHHHHHhC
No 356
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=41.57 E-value=93 Score=30.94 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHHHh-cCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--
Q 014091 225 VEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (431)
Q Consensus 225 ~~~~~~~L~~-a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~-- 300 (431)
++++-+.+++ .+|++|+.|... ...+..+.+.+..+..|+.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 14 l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~-~~~--v--~~~p~~~~v-------~~~~~~~~~ 81 (357)
T cd08181 14 VEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEI-FDE--V--EENPSLETI-------MEAVEIAKK 81 (357)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEE-eCC--C--CCCcCHHHH-------HHHHHHHHh
Confidence 3344444443 388899998877 4455667788888877776432 111 1 123322221 1222222
Q ss_pred hhCCEEEEeCC
Q 014091 301 ESADAYVFVGP 311 (431)
Q Consensus 301 ~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 82 ~~~D~IIavGG 92 (357)
T cd08181 82 FNADFVIGIGG 92 (357)
T ss_pred cCCCEEEEeCC
Confidence 36899999993
No 357
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=41.44 E-value=60 Score=32.41 Aligned_cols=38 Identities=34% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCEEEeCCccch---hchHHHHHHHHHHhC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRV---AKAQKAFIELADATG 263 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~---~~a~~~l~~lae~~~ 263 (431)
.++++.|.++++++|+.|.+... ......+..|+..+|
T Consensus 219 ~~~a~~l~~a~~~~i~~g~~~~~~~~~~~~~a~~~l~~~~G 259 (386)
T cd02768 219 KPFAKSLKKAKKPLIILGSSALRKDGAAILKALANLAAKLG 259 (386)
T ss_pred HHHHHHHhcCCCcEEEEcchhhcCCcHHHHHHHHHHHHHhC
Confidence 47889999999999999988852 224566777888887
No 358
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=41.40 E-value=83 Score=31.53 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--
Q 014091 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (431)
Q Consensus 225 ~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~-- 300 (431)
++++-+.+.+ .+|++|+.|......+..+.+.+..+..++.+.. +. + + +.||-.--+ ..+.+.+
T Consensus 14 l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~-v-~~~p~~~~v-------~~~~~~~~~ 81 (374)
T cd08189 14 LAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAV-YD--G-V-PPDPTIENV-------EAGLALYRE 81 (374)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEE-eC--C-C-CCCcCHHHH-------HHHHHHHHh
Confidence 4445555543 4788888888776555667788777777776532 11 1 1 123322211 1222222
Q ss_pred hhCCEEEEeCC
Q 014091 301 ESADAYVFVGP 311 (431)
Q Consensus 301 ~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 82 ~~~d~IIaiGG 92 (374)
T cd08189 82 NGCDAILAVGG 92 (374)
T ss_pred cCCCEEEEeCC
Confidence 36999999994
No 359
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.28 E-value=84 Score=32.57 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh-chH---HHHHHHHHHhCCCeEecCCCcccCCCCCCCcceee---cC-----
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA-KAQ---KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY---WG----- 289 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~-~a~---~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~---~G----- 289 (431)
.+.++++++.+.++++..|+.|.|..+. ++. ..+..|+-.+|-- ...|-+.++ |.-+..+ .+
T Consensus 270 ~~~i~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i---~~~Gg~~~~---~~~ik~l~v~g~Np~~~ 343 (477)
T cd02759 270 AEKIRKAARLYATAKPACIQWGLAIDQQKNGTQTSRAIAILRAITGNL---DVPGGNLLI---PYPVKMLIVFGTNPLAS 343 (477)
T ss_pred HHHHHHHHHHHHhCCCeEEEcCCcceeccchHHHHHHHHHHHHHhCCC---CCCCCccCC---CCCcEEEEEeCCCcccc
Confidence 3468999999999998899999887543 222 2333333333320 001212222 1111111 00
Q ss_pred CCCCHHHHHHhhhCCEEEEeCCccCccc
Q 014091 290 AVSSSFCGEIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 290 ~~~~~~~~~~~~~aD~vl~lG~~~~~~~ 317 (431)
.-......++|+..|+|+++...+++..
T Consensus 344 ~p~~~~~~~al~~~~~vV~~d~~~teTa 371 (477)
T cd02759 344 YADTAPVLEALKALDFIVVVDLFMTPTA 371 (477)
T ss_pred CCCHHHHHHHHhcCCeEEEEecCcCchH
Confidence 1112346778899999999998877644
No 360
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.22 E-value=61 Score=35.95 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcC--C-------CEE--EeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecC
Q 014091 221 LEAAVEATADFLNKAV--K-------PVL--VGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWG 289 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~--r-------pvI--~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G 289 (431)
-+++++.+++.|++.+ . +-+ +.|.+.........+.+|...+|-|=+....+.+.......+..|....
T Consensus 83 WDEAld~IA~kL~~i~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~~~ 162 (760)
T cd02760 83 WDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPAMYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEFWH 162 (760)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccceEEEEecCCCchHHHHHHHHHHHHHhCCCcccccCCccccccchhhhhccccc
Confidence 4567777777665421 1 222 2233222111234566788888876443222111111011122232100
Q ss_pred CCCCHHHHHHhhhCCEEEEeCCccCcccc-cccccC----CCCcceEEEccCceeec
Q 014091 290 AVSSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 290 ~~~~~~~~~~~~~aD~vl~lG~~~~~~~~-~~~~~~----~~~~~~I~Id~d~~~~~ 341 (431)
.......-+.+||+||++|+.+..... ..+... .++.|+|.||+......
T Consensus 163 --~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta 217 (760)
T cd02760 163 --RAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTG 217 (760)
T ss_pred --CCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 000112346799999999998743221 112211 24679999998876554
No 361
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=41.12 E-value=31 Score=34.92 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHH----HHHHHhCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI----ELADATGY 264 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~----~lae~~~~ 264 (431)
.+.++++++.|.++++++|+.|.+..+......+. .|+..+|.
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~ 284 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA 284 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCc
Confidence 45688999999999999999999886544333444 34445553
No 362
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=41.11 E-value=83 Score=32.38 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
...+..++..+.+..+.+.++.....+..+.+.+..+++++++|++...
T Consensus 109 TTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~ 157 (437)
T PRK00771 109 TTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157 (437)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC
Confidence 3445566666666555666667677666789999999999999998754
No 363
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=41.08 E-value=52 Score=29.77 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcC-CCEEEe-CCccchhchH-----HHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCC
Q 014091 221 LEAAVEATADFLNKAV-KPVLVG-GPNIRVAKAQ-----KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-rpvI~~-G~g~~~~~a~-----~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~ 293 (431)
.++.++.+++.|+++. +++++. +.+....... .-+.+++++.|++++..-.....--... -|. ....
T Consensus 21 ~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~---~~~~ 94 (206)
T PF04015_consen 21 HPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVDLDDEPWVEVPLP---GGE---HLKE 94 (206)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEEccCCcccceecc---CCe---eeee
Confidence 4678889999998643 333433 3332201111 2345666777777766544322111111 011 1122
Q ss_pred HHHHHHhhhCCEEEEeCC
Q 014091 294 SFCGEIVESADAYVFVGP 311 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~ 311 (431)
....+.+.++|++|.+=.
T Consensus 95 ~~v~~~~~eaD~iInvp~ 112 (206)
T PF04015_consen 95 FKVPRILLEADVIINVPK 112 (206)
T ss_pred EEhhHHHHhCCEEEEecC
Confidence 245667778999999953
No 364
>PRK13018 cell division protein FtsZ; Provisional
Probab=40.76 E-value=62 Score=32.60 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+.|..+...+|++|-|. ..+++...+.++++..+++++.. ...|-+ +-|..--.......+++
T Consensus 99 aee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~v----Vt~Pf~---~EG~~r~~nA~~gL~~L 171 (378)
T PRK13018 99 AEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGV----VTKPFK---FEGRARMQKAEEGIERL 171 (378)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEE----EEcCcc---cccHhHHHHHHHHHHHH
Confidence 45567788888888888788887554 34678889999999998776532 122211 11110000011245566
Q ss_pred hhhCCEEEEeCC
Q 014091 300 VESADAYVFVGP 311 (431)
Q Consensus 300 ~~~aD~vl~lG~ 311 (431)
.+.+|.+|++-.
T Consensus 172 ~e~~D~vividN 183 (378)
T PRK13018 172 REAADTVIVIDN 183 (378)
T ss_pred HHhCCEEEEEec
Confidence 688999999964
No 365
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=40.48 E-value=90 Score=31.40 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.. +. ++ +.+|-.-.+ ..+.+.+
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~-~~--~v--~~~p~~~~v-------~~~~~~~~ 84 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEI-YD--GV--KPNPTIEVV-------KEGVEVFK 84 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEE-eC--CC--CCCcCHHHH-------HHHHHHHH
Confidence 34555555554 4788888888776656788888888888876532 21 11 123321111 1122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 85 ~~~~D~IIaiGG 96 (382)
T PRK10624 85 ASGADYLIAIGG 96 (382)
T ss_pred hcCCCEEEEeCC
Confidence 36999999995
No 366
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.25 E-value=1.7e+02 Score=22.60 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCcc-CcccccccccCCCCcc
Q 014091 251 AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF-NDYSSVGYSLLIKKEK 329 (431)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~-~~~~~~~~~~~~~~~~ 329 (431)
+.+.|++.|++.|+-+.....|-.-+. ++ . -.+-+..+|+||++|... .+.. .+.+.+
T Consensus 2 AAeaL~~aA~~~G~~i~VEtqg~~g~~--~~---------l----t~~~i~~Ad~VIia~d~~i~~~~------rf~gk~ 60 (88)
T PRK10474 2 AAEALESAAKAKGWEVKVETQGSIGLE--NE---------L----TAEDVASADMVILTKDIGIKFEE------RFAGKT 60 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcC--CC---------C----CHHHHHhCCEEEEEecCCCcchh------ccCCCc
Confidence 457899999999999887666532111 01 1 124567999999999765 2222 123557
Q ss_pred eEEEccCceeecCCCccccccHHHHHHHHHHHh
Q 014091 330 AIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (431)
Q Consensus 330 ~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l 362 (431)
+++++.+..-- |...+++...+.+
T Consensus 61 v~~~s~~~ai~---------~~~~vl~~a~~~~ 84 (88)
T PRK10474 61 IVRVNISDAVK---------RADAIMSKIEAHL 84 (88)
T ss_pred eEEecHHHHHH---------CHHHHHHHHHHHH
Confidence 77776654311 4566666655543
No 367
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=40.21 E-value=1.3e+02 Score=30.35 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHHHHh-cCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 225 ~~~~~~~L~~-a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
++++-+.+++ .+|++|+.|......+..+.+.+..++.++.+.
T Consensus 11 l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 54 (386)
T cd08191 11 RRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVE 54 (386)
T ss_pred HHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEE
Confidence 3444445543 278999998877655677888888887787653
No 368
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=40.20 E-value=89 Score=31.20 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.||-.-.+- .+.+.+
T Consensus 11 ~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~---v-~~~p~~~~v~-------~~~~~~~ 78 (370)
T cd08192 11 AIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAAL-FDE---V-PPNPTEAAVE-------AGLAAYR 78 (370)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHHH-------HHHHHHH
Confidence 34555555554 4789999998776555677788877777776533 111 1 2334322221 122222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 79 ~~~~d~IIaiGG 90 (370)
T cd08192 79 AGGCDGVIAFGG 90 (370)
T ss_pred hcCCCEEEEeCC
Confidence 46899999994
No 369
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.04 E-value=1.7e+02 Score=25.58 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVL 105 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~ 105 (431)
--+.+++.|.+.+-=++||.-++.... +..-|.+ -++..+.. +|.. ....+.--++++-|..|.+ ..+
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~-~~~~-------~~~~~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMH-LGFNVYVV-GETT-------TPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHh-CCCeEEEe-CCcc-------cCCCCCCCEEEEEeCCCCcHHHH
Confidence 346678888887766777776554321 2222332 24444332 2211 1222223455555666766 678
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
..+..|+..++|+|.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88889999999999999876543
No 370
>PRK10586 putative oxidoreductase; Provisional
Probab=39.35 E-value=95 Score=31.06 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 223 AAVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 223 ~~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
..++++-+.+++ .+|++|+.|..... ...+.+.+..+..++-+. .|.|....+.+.++.
T Consensus 20 ga~~~l~~~~~~~g~~~~lvv~g~~~~~-~~~~~~~~~l~~~~~~~~------------------~~~g~~~~~~v~~l~ 80 (362)
T PRK10586 20 GSIDHLHDFFTDEQLSRAVWIYGERAIA-AAQPYLPPAFELPGAKHI------------------LFRGHCSESDVAQLA 80 (362)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEChHHHH-HHHHHHHHHHHHcCCeEE------------------EeCCCCCHHHHHHHH
Confidence 356677777765 47889888876543 233445544444443221 122233333333332
Q ss_pred ----hhCCEEEEeCC
Q 014091 301 ----ESADAYVFVGP 311 (431)
Q Consensus 301 ----~~aD~vl~lG~ 311 (431)
.++|+||.+|.
T Consensus 81 ~~~~~~~d~iiavGG 95 (362)
T PRK10586 81 AASGDDRQVVIGVGG 95 (362)
T ss_pred HHhccCCCEEEEecC
Confidence 35799999995
No 371
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=39.31 E-value=89 Score=25.98 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
++..+.|++.+-.++++...+....-.+.+..+|+..++|++...
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEEC
Confidence 456677777676677777667443346789999999999986654
No 372
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=39.20 E-value=3.6e+02 Score=25.92 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcC-CCEEEeCCccch-hch--HHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 222 EAAVEATADFLNKAV-KPVLVGGPNIRV-AKA--QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~-rpvI~~G~g~~~-~~a--~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
++.+..++++..++. .|++.--.|..+ ++. ..-+..+||.++++++.-- +++.+-. ..++-+. ...
T Consensus 60 Pevv~Av~~~v~e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~-~~~~~~~-s~~~~~~--------~ia 129 (293)
T COG2006 60 PEVVAAVAEVVKEAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNFD-TKRYVLG-SEWFQGL--------KIA 129 (293)
T ss_pred HHHHHHHHHHHHHhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeeec-cCceEec-cccccCc--------ccc
Confidence 578889999998876 445443233211 111 1347889999999999865 4333322 1122221 344
Q ss_pred HHhhhCCEEEEeCC
Q 014091 298 EIVESADAYVFVGP 311 (431)
Q Consensus 298 ~~~~~aD~vl~lG~ 311 (431)
+.+.++|+||.+=.
T Consensus 130 ~~vl~aD~vI~LPk 143 (293)
T COG2006 130 EPVLEADVVINLPK 143 (293)
T ss_pred hhhhccceEEecce
Confidence 56679999998853
No 373
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=38.99 E-value=2.3e+02 Score=24.75 Aligned_cols=89 Identities=18% Similarity=0.091 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhcCCCceEEecCchhHHHHhhhhhhh-hcCccEEEEeCCcchH-HHH
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCCNELNAGYAADGYAR-SRGVGACVVTFTVGGL-SVL 105 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar-~tg~gv~~~t~GpG~~-n~~ 105 (431)
-+.+++.|.+.+-=++||+-++... .+...|.+ -+++.+... +. +.. .+.--++++-|-.|.+ +.+
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~-~~--------~~~~~~~~D~vI~iS~sG~t~~~i 92 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMH-LGLNVYVVG-ET--------TTPAIGPGDLLIAISGSGETSSVV 92 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHh-CCCeEEEeC-CC--------CCCCCCCCCEEEEEcCCCCcHHHH
Confidence 4567788877766677777554332 22223332 245544432 21 122 2223344444555555 788
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
..+..|+..++|+|.||+.....
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 89999999999999999976544
No 374
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=38.97 E-value=43 Score=37.63 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCc---ccCCCCCCCcceeecCCCCCHHH
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGK---GLVPEHHPHFIGTYWGAVSSSFC 296 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gk---g~~~~~hp~~~G~~~G~~~~~~~ 296 (431)
.-+++++.+++.|++.+....+.+... ..++...|.+.+|.+-+.+...- ..+.. .-..++. .+... ...
T Consensus 294 sWdeAl~~ia~~l~~~~~~~G~~s~~~----t~e~~~~l~k~~gs~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~ 366 (847)
T PRK08166 294 NADQALQGAADILRQAKKVIGIGSPRA----SLESNFALRELVGAENFYTGIAAGEQERLQL-ALKVLRE-GGIYT-PSL 366 (847)
T ss_pred CHHHHHHHHHHHHHhhcceEEEECCCc----chHHHHHHHHHhCCCCcccccChHHhhhhhH-HHHHhhc-CCCCC-CCH
Confidence 357789999999988876554323222 12334445555665543221100 00000 0001111 11111 122
Q ss_pred HHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccC
Q 014091 297 GEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPH 336 (431)
Q Consensus 297 ~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d 336 (431)
. -+++||+||++|+.+.+.....+.. ..++.|+|.+|..
T Consensus 367 ~-di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 R-EIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred H-HHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 2 3578999999999876433211111 1135677777764
No 375
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=38.80 E-value=1.3e+02 Score=29.19 Aligned_cols=83 Identities=10% Similarity=-0.070 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCC-CCCCcceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~-~hp~~~G~~~G~~~~~~~~~ 298 (431)
.++..+++.+.+..+.-.+|++|-|. ..+++...+.+.++..+++++.-..-.-.+.. ..++.. ....++
T Consensus 71 a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA--------~~~l~~ 142 (303)
T cd02191 71 AEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNA--------AEGFQT 142 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhH--------HHHHHH
Confidence 34566777778888887677766443 34577888888888888765552211001110 111111 124566
Q ss_pred HhhhCCEEEEeCC
Q 014091 299 IVESADAYVFVGP 311 (431)
Q Consensus 299 ~~~~aD~vl~lG~ 311 (431)
+.+.+|.+|++-.
T Consensus 143 L~~~~D~~iv~dN 155 (303)
T cd02191 143 LVREVDNLMVIPN 155 (303)
T ss_pred HHHhCCEEEEEeh
Confidence 7788999999964
No 376
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=38.19 E-value=2.4e+02 Score=25.36 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~ 106 (431)
...++.|++.++++||+.|+.+-|-.... ....+.+-.+.+..|... ++...++-+..-+-+.+....
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~~~~----~~trp~V~~~at~~el~~--------~l~~~g~~~~~~~g~i~G~~g 100 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYGVGK----LVEEPYVYGAATSPELVE--------ELKEHGVKFREPGGGIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcCCC----CCCCCceEEEeCCHHHHH--------HHHhcCCeeecCCCccccHHH
Confidence 35899999999999999999998855321 111233333333333211 111111121111111111111
Q ss_pred H-HHHhhhcCCcEEEEeCCCCCcccC
Q 014091 107 A-IAGAYSENLPVICIVGGPNSNDYG 131 (431)
Q Consensus 107 g-l~~A~~~~~Pvl~I~g~~~~~~~~ 131 (431)
. +..|...++|.++|.+..+.....
T Consensus 101 lLl~~a~~~gi~ai~L~~e~p~y~pD 126 (188)
T TIGR00162 101 LLLGVSELEGIPGACLMGETPGYMID 126 (188)
T ss_pred HHHHHHHHCCCCeEEEEEeCCCCCCC
Confidence 1 235677899999999988776443
No 377
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=38.10 E-value=64 Score=29.45 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
.+.++.++++++++. -+|.+++|.-+..-++.+.=++| .+.++|.+++..-||
T Consensus 130 APTAL~~l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L-~~~~iP~It~~GrkG 183 (203)
T PRK05954 130 APTALLALCQQIRAGRVKPSLVIGVPVGFVSVVEAKQAL-AQLDVPQIRVEGRKG 183 (203)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEECCcccCHHHHHHHH-HhCCCCEEEEecCCC
Confidence 356778889999875 48989988766443443333334 458999999887665
No 378
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=38.10 E-value=45 Score=36.92 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHH
Q 014091 221 LEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF 295 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~ 295 (431)
-+++++.+++.|++.+ .-+.+.+... . ....+.+|+..+|.|-+.+. +.-... +...+.. -.+|..
T Consensus 119 WdEAl~~ia~~l~~i~~~~G~~~i~~~~~~~-~--~~~~~~~~~~~~Gs~n~~~~-~~~c~~---~~~~~~~-~~~G~~- 189 (759)
T PRK15488 119 WDEAYQEIAAKLNAIKQQHGPESVAFSSKSG-S--LSSHLFHLATAFGSPNTFTH-ASTCPA---GYAIAAK-VMFGGK- 189 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeecCCC-c--HHHHHHHHHHHcCCCCCCCc-cccccc---hhhhhHH-hhcCCC-
Confidence 5678888888776432 2233322111 1 22357788888887733211 111111 1111110 011110
Q ss_pred HHHHhhhCCEEEEeCCccCccccc-ccc---c-C-CCCcceEEEccCceeec
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSV-GYS---L-L-IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~-~~~---~-~-~~~~~~I~Id~d~~~~~ 341 (431)
...-+++||+||++|+...+.... .+. . . .++.|+|.||+......
T Consensus 190 ~~~D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta 241 (759)
T PRK15488 190 LKRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVA 241 (759)
T ss_pred ccCCHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcch
Confidence 123467999999999886432211 111 1 1 24779999998876553
No 379
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=38.04 E-value=1e+02 Score=31.08 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHHh-----cCCCEEEeCCccch-hchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 225 VEATADFLNK-----AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 225 ~~~~~~~L~~-----a~rpvI~~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
++++-+.+++ .||++|+.|..... .+..+.+.+..++.++.+..- . ++ +.+|-.--+ ....+
T Consensus 11 ~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f-~--~v--~~~p~~~~v-------~~~~~ 78 (383)
T cd08186 11 IEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLY-N--KV--TPNPTVDQV-------DEAAK 78 (383)
T ss_pred HHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEe-C--CC--CCCCCHHHH-------HHHHH
Confidence 3444444543 47899998877643 455688888888888765421 1 11 122322221 11222
Q ss_pred Hh--hhCCEEEEeCC
Q 014091 299 IV--ESADAYVFVGP 311 (431)
Q Consensus 299 ~~--~~aD~vl~lG~ 311 (431)
.+ .++|+||.||.
T Consensus 79 ~~~~~~~D~IIaiGG 93 (383)
T cd08186 79 LGREFGAQAVIAIGG 93 (383)
T ss_pred HHHHcCCCEEEEeCC
Confidence 22 26899999994
No 380
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=37.58 E-value=74 Score=26.79 Aligned_cols=43 Identities=21% Similarity=0.471 Sum_probs=24.9
Q ss_pred HHHHhhhCCEEEE-eCCccCccccc---ccccCCCCcceEEEccCcee
Q 014091 296 CGEIVESADAYVF-VGPIFNDYSSV---GYSLLIKKEKAIIVQPHRVT 339 (431)
Q Consensus 296 ~~~~~~~aD~vl~-lG~~~~~~~~~---~~~~~~~~~~~I~Id~d~~~ 339 (431)
-+.++++||+||+ +|-.+-.++.. ++.. .-++.+|.+..+...
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~-AlgKplI~lh~~~~~ 112 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA-ALGKPLITLHPEELH 112 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHH-HcCCCeEEecchhcc
Confidence 3457889999884 66655544431 1111 125668888766543
No 381
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=37.53 E-value=98 Score=25.47 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+++.+.|++.+-.++++-..+......+.+..+|+..++|++...
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 456677777776666666666433356899999999999977654
No 382
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=36.88 E-value=92 Score=30.75 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
++++.+.+...+|++|+.|..... ...+.+.+..+..++.+
T Consensus 10 l~~l~~~l~~~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~ 50 (344)
T TIGR01357 10 LDQLVEELAEPSKLVIITDETVAD-LYADKLLEALQALGYNV 50 (344)
T ss_pred HHHHHHHhhcCCeEEEEECCchHH-HHHHHHHHHHHhcCCce
Confidence 344445555568899999887754 36677777777777765
No 383
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.79 E-value=1e+02 Score=30.53 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc--hhc--hHHHHHHHHHHhCCCeEecC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR--VAK--AQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~--~~~--a~~~l~~lae~~~~Pv~tt~ 270 (431)
.++.++++++++++-+-=++++|..-. +++ +......+.|+++||++|..
T Consensus 65 ~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 65 KEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 567899999999998777999997653 332 34455557889999999843
No 384
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=36.75 E-value=51 Score=34.68 Aligned_cols=110 Identities=7% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
+++++.+++.|++.+.| +.+.+++.........+.+|+...+-..-....... .+....+....+........-
T Consensus 118 deAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~G~~~~~~~D 193 (524)
T cd02764 118 ADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDPLS----AEDVNEAWQASFGKDVVPGYD 193 (524)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeECCCC----hHHHHHHHHHHcCCCCCCCcC
Q ss_pred hhhCCEEEEeCCccCcc------cccccccCCCCc------ceEEEcc
Q 014091 300 VESADAYVFVGPIFNDY------SSVGYSLLIKKE------KAIIVQP 335 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~~------~~~~~~~~~~~~------~~I~Id~ 335 (431)
+++||+||++|+.+.+. ....+....+.. |+|.||+
T Consensus 194 ~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDP 241 (524)
T cd02764 194 FDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAES 241 (524)
T ss_pred hhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEec
No 385
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=36.67 E-value=16 Score=34.96 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhcCCCceEEecC----------chhHHHHhhhhhhhhcC-ccEEEE
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRG-VGACVV 95 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~~~~i~~v~~~----------hE~~A~~~A~gyar~tg-~gv~~~ 95 (431)
-..+.++.+.+.|.+.|.-+-+...+ =+++.|. +..++|... +|..-+.+=-||.-..| ...++.
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~--~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~ 115 (270)
T cd08769 38 ELNAVLEELFESGFEEIVVADSHGRMDNIDYEELD--PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMD 115 (270)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC--cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCccc
Confidence 34577889999999999998765443 2444554 456666432 33233333346655455 334444
Q ss_pred eCCcch------------HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC
Q 014091 96 TFTVGG------------LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (431)
Q Consensus 96 t~GpG~------------~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (431)
|+--|. .-+.-.-+-|-.-++||++++|+...-...+. .+ ++ ...+..=+.+.+++....
T Consensus 116 HT~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~-----~~--P~-~~tv~vK~~~gr~aA~~~ 187 (270)
T cd08769 116 HTYSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKE-----ET--PW-AVFVPTKESLSRYSAKSP 187 (270)
T ss_pred cccccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-ceEEEEeeecCCCccccC
Confidence 443332 11222223344569999999998422111110 00 00 011222234455777788
Q ss_pred CcchHHHHHHHHHHHhhh
Q 014091 164 NLGDAHELIDTAISTALK 181 (431)
Q Consensus 164 ~~~~~~~~i~~A~~~A~~ 181 (431)
+|+.+.+.|++|.+.|..
T Consensus 188 ~p~~a~~~I~~aa~~Al~ 205 (270)
T cd08769 188 SMKKVKEELREAVKEALE 205 (270)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999988874
No 386
>PRK05953 precorrin-8X methylmutase; Validated
Probab=36.27 E-value=73 Score=29.16 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
.+.++-++++++.+. -+|.+++|.-+-.-++.+.=.+| .+.++|.++...-||
T Consensus 128 APTAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L-~~~~vP~It~~GrkG 181 (208)
T PRK05953 128 SQTALTALVELVEAEEIRPALVIATPAGFIDADDAKERL-QDSLVPHITIDGRKG 181 (208)
T ss_pred cHHHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHH-HhCCCCEEEEeCCCC
Confidence 345777888998875 58999988766544454444445 358999999877665
No 387
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=36.14 E-value=3.5e+02 Score=25.43 Aligned_cols=115 Identities=11% Similarity=0.123 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHH
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 107 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~g 107 (431)
..++.|++.+++.|++.|..+-|.... .+.+.+...++...+|...-+..-| ...---| +-+||++. =
T Consensus 94 e~s~~v~~w~~~~~v~~ii~~~g~~~~----~~~e~~~v~~va~~~~~~~~l~~~~-~~~~~~G---~I~G~~g~----l 161 (244)
T COG1938 94 EISNAVVEWAEENGVEEVISLGGMPAR----LREEKPSVYGVATSEEKLEKLKDLG-AEPLEEG---TIVGPSGA----L 161 (244)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcc----cccCCCceEEEecchhhhhHHhhcC-CCccccc---eeecccHH----H
Confidence 478999999999999999999877431 1223457889999988776666665 2222224 23577644 2
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCC
Q 014091 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN 164 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~ 164 (431)
+.++..-++|=++|-+.+....-+.+ .....++.+..+..++.....
T Consensus 162 l~e~~~r~i~a~~ll~et~~~~PDP~----------AAa~vve~lnk~~~l~V~td~ 208 (244)
T COG1938 162 LNECLKRGIPALVLLAETFGDRPDPR----------AAARVVEALNKMLGLNVDTDK 208 (244)
T ss_pred HHHHHHcCCCeEEEeccccCCCCChH----------HHHHHHHHHHHHhcCccCHHH
Confidence 34566789999999887654422211 012345555666656654444
No 388
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=36.02 E-value=78 Score=29.14 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
.+.++.++++++.+. -+|.+++|.-+..-++.+.=.+| ...++|.+++..-||
T Consensus 141 APTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L-~~~~iP~It~~GrkG 194 (214)
T PRK08286 141 APTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEAL-TESDLPAIAALGRKG 194 (214)
T ss_pred cHHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHH-HhCCCCEEEEecCCC
Confidence 356788899999875 58999988766433343333333 458999999877665
No 389
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=35.90 E-value=1.9e+02 Score=27.54 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCchH--HHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLNA 107 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~~g 107 (431)
+.+++.|.+..--++||+-++... .|...|.+ .+++.+.. ++.....++. ..++.--++++-|..|.+ +.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~-~g~~~~~~-~d~~~~~~~~--~~~~~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLR-IGVRCQAY-DDAHIMLMSA--ALLQEGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhh-CCCeEEEc-CCHHHHHHHH--hcCCCCCEEEEEeCCCCCHHHHHH
Confidence 345566666666678888765443 23334443 35555433 3333222222 222223445555566655 68888
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 014091 108 IAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+..|...++|+|.||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 889999999999999976544
No 390
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=35.57 E-value=2.1e+02 Score=24.84 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHcCCCE----EEecCCCchHHHHH-hhhcCCCceEE----------ecCchhHHHHhhhhhhhhc---CccEEEE
Q 014091 34 ARRLVEIGAKD----VFSVPGDFNLTLLD-HLIAEPELNLV----------GCCNELNAGYAADGYARSR---GVGACVV 95 (431)
Q Consensus 34 ~~~L~~~GV~~----vFgvpG~~~~~l~~-al~~~~~i~~v----------~~~hE~~A~~~A~gyar~t---g~gv~~~ 95 (431)
.+.|+++|++. ++-+||...+|+.- .|.+..+..-| ..++|..|.-.+.|..+++ +..|.+.
T Consensus 35 ~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~G 114 (152)
T COG0054 35 VDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVPVTFG 114 (152)
T ss_pred HHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHhhCCCeEee
Confidence 46778888654 99999999999654 44443333322 3467888888888877764 3444444
Q ss_pred eCCc
Q 014091 96 TFTV 99 (431)
Q Consensus 96 t~Gp 99 (431)
..+|
T Consensus 115 VLt~ 118 (152)
T COG0054 115 VLTT 118 (152)
T ss_pred ecCC
Confidence 4443
No 391
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.27 E-value=1e+02 Score=27.12 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
++..+++++.|++++--+|++|.|+.. ...-+.+..++++.+|+-+..
T Consensus 87 ~~~~~~i~~~I~~~~pdiv~vglG~Pk--QE~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 87 EEEEEAIINRINASGPDIVFVGLGAPK--QERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred hhhHHHHHHHHHHcCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEEEEC
Confidence 445678889999988889999999976 567788899999888666544
No 392
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.19 E-value=1.2e+02 Score=30.29 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++-+.+.+ .+|++|+.|......+..+.+.+..+..++.+.. +. ++- .+|-.-.+. ...+.+
T Consensus 15 ~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~--~v~--~~p~~~~v~-------~~~~~~~ 82 (377)
T cd08188 15 ALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVV-FS--DVS--PNPRDEEVM-------AGAELYL 82 (377)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCC--CCCCHHHHH-------HHHHHHH
Confidence 34455555554 4788999888776555677788877777776532 11 111 133222221 111222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 83 ~~~~d~IIaiGG 94 (377)
T cd08188 83 ENGCDVIIAVGG 94 (377)
T ss_pred hcCCCEEEEeCC
Confidence 37999999994
No 393
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=35.05 E-value=1.9e+02 Score=22.27 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcc
Q 014091 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (431)
Q Consensus 250 ~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (431)
=+.+.|++-|++.|+.+.....|..-+. ++ --.+-+.++|+||++|....+-. ..+.+.+
T Consensus 15 lAae~L~~aA~~~G~~i~VE~qg~~g~~--~~-------------lt~~~i~~Ad~viia~d~~~~~~-----~rf~gk~ 74 (85)
T TIGR00829 15 MAAEALEKAAKKRGWEVKVETQGSVGAQ--NA-------------LTAEDIAAADGVILAADREIDLS-----RRFAGKN 74 (85)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCcc--CC-------------CCHHHHHhCCEEEEeccCCCchh-----hhcCCCe
Confidence 4679999999999999987666532111 11 11245679999999997643211 1123556
Q ss_pred eEEEccC
Q 014091 330 AIIVQPH 336 (431)
Q Consensus 330 ~I~Id~d 336 (431)
++.++.+
T Consensus 75 v~~~~~~ 81 (85)
T TIGR00829 75 VYETSTG 81 (85)
T ss_pred EEEecHH
Confidence 7777654
No 394
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=34.88 E-value=59 Score=30.93 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.+.+++++++|.++++ +++.|.|....-+.. +.....++|+|+..
T Consensus 115 ~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a~~-~~~~l~~~g~~~~~ 159 (284)
T PRK11302 115 PSAINRAVDLLTQAKK-ISFFGLGASAAVAHD-AQNKFFRFNVPVVY 159 (284)
T ss_pred HHHHHHHHHHHHcCCe-EEEEEcchHHHHHHH-HHHHHHhcCCceEe
Confidence 5679999999999977 778888865433333 33333457777664
No 395
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=34.69 E-value=83 Score=31.20 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT 286 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~ 286 (431)
...+.++++|++ ..+.++|... +.....+..+++.+++|+++.......+...++++.-+
T Consensus 50 ~~~~~~c~ll~~--~V~aiiGp~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~~fr~ 109 (382)
T cd06380 50 ALTNAICSQLSR--GVFAIFGSYD--KSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVLQM 109 (382)
T ss_pred HHHHHHHHHHhc--CcEEEEecCc--HHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcEEEEe
Confidence 466788999954 5677778765 34667889999999999998765444445566655544
No 396
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=34.64 E-value=1.1e+02 Score=23.40 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
++..+.|++-+--++++...+.. ...+.+..+++..++|++...
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777666556666656644 478899999999999998755
No 397
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=34.41 E-value=1.7e+02 Score=28.78 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCEEE--ecCCCchHHH--HHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHH
Q 014091 31 RHLARRLVEIGAKDVF--SVPGDFNLTL--LDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVL 105 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vF--gvpG~~~~~l--~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~ 105 (431)
+.+++.|.+.++++|| |+-++.+... -..+.+..++... + ....-+.-......+.-.+++..|=-|.+ +.+
T Consensus 33 ~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~-~--~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i 109 (340)
T PRK11382 33 HAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY-A--ISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVI 109 (340)
T ss_pred HHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE-E--eccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHH
Confidence 4577888888888654 4444333221 1112332233322 1 22222332222233333445555555555 799
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.++..|+..+.|+|.||+...+.
T Consensus 110 ~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 110 KALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred HHHHHHHHcCCeEEEEECCCCCh
Confidence 99999999999999999986554
No 398
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=34.35 E-value=1.3e+02 Score=30.05 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=40.0
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhh
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~ 301 (431)
.++++.+.+.+ .+|++|+.|.... ..+.+.+..+..++.+..-. + + +.+|-.-.+ ..+.+.++
T Consensus 10 ~l~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~-~---~-~~~p~~~~v-------~~~~~~~~ 74 (367)
T cd08182 10 AIAKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFD-D---V-QPNPDLEDL-------AAGIRLLR 74 (367)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEc-C---c-CCCcCHHHH-------HHHHHHHH
Confidence 34555566654 4789999988775 34556666666665443211 1 0 123322221 12222332
Q ss_pred --hCCEEEEeCC
Q 014091 302 --SADAYVFVGP 311 (431)
Q Consensus 302 --~aD~vl~lG~ 311 (431)
++|+||.||.
T Consensus 75 ~~~~D~IIavGG 86 (367)
T cd08182 75 EFGPDAVLAVGG 86 (367)
T ss_pred hcCcCEEEEeCC
Confidence 6899999995
No 399
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.29 E-value=41 Score=27.17 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=27.6
Q ss_pred CCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 236 ~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
||.++++|.|..++-..+.++++++..|+++-.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i 34 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEV 34 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEE
Confidence 577899999998777788999999999988543
No 400
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=34.10 E-value=53 Score=35.98 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhc----hHHHHHHHHHHhC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADATG 263 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~----a~~~l~~lae~~~ 263 (431)
.+++++|.++|+|+|++|.|+.... ....+..|+..+|
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 5678999999999999999986532 2345566777776
No 401
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.08 E-value=1.5e+02 Score=24.75 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhcCC--CEEEeCCccchh-----------chHHHHHHHHHHhCCCeEecCC---CcccCCCCC----
Q 014091 221 LEAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMPS---GKGLVPEHH---- 280 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~r--pvI~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~~---gkg~~~~~h---- 280 (431)
..+.++-+..++..... -|++.+.|+... +..+.+..|++..+++++.... .+|+.++++
T Consensus 17 ~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC~~~a~~RGl~~~~~~~~~ 96 (128)
T PRK00207 17 ASSAYQFAQALLAEGHELVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVCVAAALRRGVVDEEEAERL 96 (128)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEeHHHHHHcCCCchhHHHhh
Confidence 45567777777776554 388888888431 1246677888888998887543 678877421
Q ss_pred -----CCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 281 -----PHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 281 -----p~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
.+.-|.- +.|-....+++.+||-||.+
T Consensus 97 ~~~~~~l~~gf~--i~gLgel~~~~~~aDrvI~F 128 (128)
T PRK00207 97 GLAAANLAPGFE--LSGLGELAEASLTADRVVQF 128 (128)
T ss_pred cccccccccCcE--EcCHHHHHHHHHhcCeeeeC
Confidence 2333321 23334677888999988864
No 402
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=33.70 E-value=1.4e+02 Score=23.03 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
+++..+.|++.+.-++++...+.. .-...|.+++|..++|++....
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~-~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEV-YLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECC
Confidence 456778888655555555555543 3678999999999999988654
No 403
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=33.56 E-value=1.3e+02 Score=30.12 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=24.6
Q ss_pred HHHHHHHh-cCCCEEEeCCccc-hhchHHHHHHHHHHhCCCe
Q 014091 227 ATADFLNK-AVKPVLVGGPNIR-VAKAQKAFIELADATGYPI 266 (431)
Q Consensus 227 ~~~~~L~~-a~rpvI~~G~g~~-~~~a~~~l~~lae~~~~Pv 266 (431)
++.+.+++ .+|++|+.|.... ..+..+.+.+..+..|+-+
T Consensus 19 ~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~ 60 (382)
T cd08187 19 ELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEV 60 (382)
T ss_pred HHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeE
Confidence 33333333 5899999886543 2345677777777766654
No 404
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=33.50 E-value=74 Score=30.26 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 228 TADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 228 ~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
+++.+.+...-+|+.|..+.......-=..+|+.+|+|++|...
T Consensus 103 Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 103 LAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 34444554555999999998777777788899999999988653
No 405
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=33.25 E-value=67 Score=35.14 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHhhhCCEEEEeCCccCcccc-cccc----cCCCCcceEEEccCceeec
Q 014091 297 GEIVESADAYVFVGPIFNDYSS-VGYS----LLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 297 ~~~~~~aD~vl~lG~~~~~~~~-~~~~----~~~~~~~~I~Id~d~~~~~ 341 (431)
-+-++.+|+||+||+...+-.. .... ....+.|+|.+|+.+.++.
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~ema 464 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMA 464 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHH
Confidence 3557899999999998765442 1221 1135789999999988775
No 406
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=33.19 E-value=92 Score=28.58 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
.+.++-++++++++. -+|.+++|.-+..-++.+.=.+| ...++|.+|...-||
T Consensus 136 APTAL~~l~~li~~g~~~PalVIg~PVGFV~A~ESKe~L-~~~~vP~It~~GrkG 189 (210)
T PRK06264 136 APTALFEVIRLVKEEGIKPKLVVGVPVGFVKAAESKEAL-RNTNIPSISTIGPKG 189 (210)
T ss_pred cHHHHHHHHHHHHhCCCCCcEEEEeCCccccHHHHHHHH-HhCCCCEEEEecCCC
Confidence 346778889999875 58999988766433343333344 457999999877665
No 407
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=33.07 E-value=1.6e+02 Score=25.20 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccch-------hchHHHHHHHHHHhCCCeEecC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRV-------AKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~-------~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
....++++++.+++...++|+++.-... ..-.+.++++|++.+++++..+
T Consensus 86 ~~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 86 TRANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 4566788888888777778887643211 1235778899999999998754
No 408
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.98 E-value=69 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEe
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG 70 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~ 70 (431)
...+++.+.+.|++.+.-.||.....+.+.+.+ .+++++.
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~-~gi~vig 107 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAARE-AGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHH-TT-EEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHH-cCCEEEe
Confidence 345667778889999999999988899998876 4898874
No 409
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=32.97 E-value=1.5e+02 Score=29.70 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHh-cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--h
Q 014091 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--E 301 (431)
Q Consensus 225 ~~~~~~~L~~-a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~--~ 301 (431)
++++-+.+.+ .+|++|+.|.... ..+.+.+..+..++.+..- . +.. +|-.--+ ..+.+.+ .
T Consensus 11 ~~~l~~~l~~~~~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~-~----~~~-~p~~~~v-------~~~~~~~~~~ 74 (374)
T cd08183 11 AKELPALAAELGRRVLLVTGASSL---RAAWLIEALRAAGIEVTHV-V----VAG-EPSVELV-------DAAVAEARNA 74 (374)
T ss_pred HHHHHHHHHHcCCcEEEEECCchH---HHHHHHHHHHHcCCeEEEe-c----CCC-CcCHHHH-------HHHHHHHHhc
Confidence 3444444444 5899999998775 4566777677777765332 1 111 3322111 1222223 3
Q ss_pred hCCEEEEeCC
Q 014091 302 SADAYVFVGP 311 (431)
Q Consensus 302 ~aD~vl~lG~ 311 (431)
.+|+||.||.
T Consensus 75 ~~D~IIaiGG 84 (374)
T cd08183 75 GCDVVIAIGG 84 (374)
T ss_pred CCCEEEEecC
Confidence 6999999993
No 410
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.67 E-value=1.2e+02 Score=25.00 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
+.+.+.++.|.+++---+.+..+-....-.+++.++|+++++|++.-+.
T Consensus 59 ~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 59 EELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 3566777778777666565555432335679999999999999998654
No 411
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=32.56 E-value=81 Score=31.36 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
++++.+.+. .+|++|+.|.++...+..+.+.+..+
T Consensus 14 ~~~l~~~~~-~~r~lvVtd~~~~~~g~~~~v~~~L~ 48 (355)
T TIGR03405 14 LALAPQLLH-GRRVVVVTFPEARALGLARRLEALLG 48 (355)
T ss_pred HHHHHHHhC-CCeEEEEECcchhhcchHHHHHHHhc
Confidence 444445554 48999999987755455555555443
No 412
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.52 E-value=1.1e+02 Score=29.63 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcc
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI 284 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~ 284 (431)
..++.+.+++.+ ++..+++|.... .....+..++++.++|+++.......+++..+++.
T Consensus 54 ~a~~~~~~li~~-~~v~~iiG~~~s--~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~f 112 (344)
T cd06348 54 EAINAFQTLINK-DRVLAIIGPTLS--QQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVF 112 (344)
T ss_pred HHHHHHHHHhhh-cCceEEECCCCc--HHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEE
Confidence 344555565544 567788886542 34556778999999999986554333455455444
No 413
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=32.21 E-value=3.1e+02 Score=23.07 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecC--chhHHHHhhhhhhhhcC-ccEEEEeCCc-c-h
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCC--NELNAGYAADGYARSRG-VGACVVTFTV-G-G 101 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~--hE~~A~~~A~gyar~tg-~gv~~~t~Gp-G-~ 101 (431)
.+.-+.+++.|.+.|++.|+-+.+. ..+...+.+ .++++|... +......+..|.....+ -.++++..-- - .
T Consensus 24 ~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~-~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~ 100 (160)
T PF12804_consen 24 KPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER-YGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLS 100 (160)
T ss_dssp EEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT-TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-
T ss_pred ccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc-cCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccC
Confidence 5688999999999999999999888 356655654 479998887 44555556666666534 5566655554 4 2
Q ss_pred HHHHHHHHHhhh-cCCcEEEEeCC
Q 014091 102 LSVLNAIAGAYS-ENLPVICIVGG 124 (431)
Q Consensus 102 ~n~~~gl~~A~~-~~~Pvl~I~g~ 124 (431)
.+.+..+.+++. +..++++.+..
T Consensus 101 ~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 101 PELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHHHhccCCcEEEEEEC
Confidence 467888888876 45556655543
No 414
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.09 E-value=3.2e+02 Score=28.03 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHh-cCCCEEEeCCccchh-c---hHHHHHHHHHHhCCCeEecCCCcccCCCCC-CCcceeecC------
Q 014091 222 EAAVEATADFLNK-AVKPVLVGGPNIRVA-K---AQKAFIELADATGYPIAIMPSGKGLVPEHH-PHFIGTYWG------ 289 (431)
Q Consensus 222 ~~~~~~~~~~L~~-a~rpvI~~G~g~~~~-~---a~~~l~~lae~~~~Pv~tt~~gkg~~~~~h-p~~~G~~~G------ 289 (431)
.+.++++++++.+ +++.+|+.|.+..+. + ....+..|+-.+|-- .. .|-+.++..+ |.-+..+.-
T Consensus 266 ~~~i~~~A~~~a~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG~i--g~-~Gg~~~~~~~~~~~ik~l~~~~~Np~ 342 (454)
T cd02755 266 ADTIRRIAREFAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLGNI--DK-RGGLYYAGSAKPYPIKALFIYRTNPF 342 (454)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCccccccCchHHHHHHHHHHHHHhCCC--CC-CCCcccCCCCCCCCceEEEEcCCCcc
Confidence 4678999999998 556677778765432 2 233444555555530 00 1112222111 111111100
Q ss_pred --CCCCHHHHHHhhhCCEEEEeCCccCcc
Q 014091 290 --AVSSSFCGEIVESADAYVFVGPIFNDY 316 (431)
Q Consensus 290 --~~~~~~~~~~~~~aD~vl~lG~~~~~~ 316 (431)
.-......++|++.|+++++...+++.
T Consensus 343 ~~~p~~~~~~~al~~l~f~V~~d~~~teT 371 (454)
T cd02755 343 HSMPDRARLIKALKNLDLVVAIDILPSDT 371 (454)
T ss_pred cccCCHHHHHHHHhcCCeEEEEeCCcCch
Confidence 111224456777888888887666653
No 415
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=31.80 E-value=55 Score=28.84 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=26.2
Q ss_pred hcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 234 KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 234 ~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
-|++|||=+-+.+.. =+.+++.+|++.+++++=..
T Consensus 3 lA~~PVISVNGN~AA-L~p~eiveLa~~~~A~iEVN 37 (178)
T PF02006_consen 3 LAKHPVISVNGNTAA-LVPEEIVELAKATGAKIEVN 37 (178)
T ss_pred ccCCCEEEEcccHHH-hChHHHHHHHHHhCCCEEEE
Confidence 478898888766642 26788889999999887554
No 416
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.79 E-value=43 Score=36.03 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=28.7
Q ss_pred HhhhCCEEEEeCCccCccccccc---------ccC----CCCcceEEEccCceeec
Q 014091 299 IVESADAYVFVGPIFNDYSSVGY---------SLL----IKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~---------~~~----~~~~~~I~Id~d~~~~~ 341 (431)
.+++||+||++|+...+.....| ..+ -+++|+|.||+......
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA 222 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTA 222 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcch
Confidence 46899999999988654432111 101 24789999999876553
No 417
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=31.76 E-value=1.1e+02 Score=29.00 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCC--CCCCCcceee
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP--EHHPHFIGTY 287 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~--~~hp~~~G~~ 287 (431)
..++.+++++. .+....++|..... ....+..+++.+++|+++...+-..+. +.+++++-+.
T Consensus 50 ~~~~~~c~l~~-~~~v~ai~G~~~s~--~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~ 113 (328)
T cd06351 50 SLLRAVCDLLV-SQGVAAIFGPTSSE--SASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLY 113 (328)
T ss_pred HHHHHHHHHHh-ccCcEEEECCCCHH--HHHHHHHHhccCCCCeEEeecCcccccccccccceEEec
Confidence 45677788886 45677788876543 566789999999999999765444333 3566766653
No 418
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.23 E-value=3.3e+02 Score=23.07 Aligned_cols=75 Identities=11% Similarity=-0.025 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAI 108 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl 108 (431)
+...+...|+++|.+.++.=.--....++++..++ +...| |.+..++++-+..-+++-.|
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~-~adiV-------------------glS~l~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET-KADAI-------------------LVSSLYGHGEIDCKGLRQKC 76 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEE-------------------EEecccccCHHHHHHHHHHH
Confidence 56788889999999999988888888888888764 55555 22334444444445555666
Q ss_pred HHhhhcCCcEEEEeCC
Q 014091 109 AGAYSENLPVICIVGG 124 (431)
Q Consensus 109 ~~A~~~~~Pvl~I~g~ 124 (431)
.++-... +.+++.|.
T Consensus 77 ~~~gl~~-~~vivGG~ 91 (134)
T TIGR01501 77 DEAGLEG-ILLYVGGN 91 (134)
T ss_pred HHCCCCC-CEEEecCC
Confidence 6655544 34555554
No 419
>PRK02399 hypothetical protein; Provisional
Probab=31.05 E-value=5.8e+02 Score=25.96 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHcCCCE-EEecCCCchHHHHHhhhcCCCceEEe--cCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 28 TLGRHLARRLVEIGAKD-VFSVPGDFNLTLLDHLIAEPELNLVG--CCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~-vFgvpG~~~~~l~~al~~~~~i~~v~--~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
...+.+.+.|++.|.+. ||=--|.. -.-++.|.++..+.-|+ +.+|-+-=. .|- +.+.||.
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G-GraME~Li~~G~~~gVlDlTttEv~d~l----------~GG-v~sagp~---- 262 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG-GRAMEKLIDSGLIAGVLDLTTTEVCDEL----------FGG-VLAAGPD---- 262 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc-hHHHHHHHHcCCceEEEEcchHHHHHHH----------hCc-CccCCcc----
Confidence 56678888888888763 34333322 22345555544455554 555522110 111 1123554
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC----CcchHHHHHHHHHHHh-
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN----NLGDAHELIDTAISTA- 179 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~----~~~~~~~~i~~A~~~A- 179 (431)
=+-.|-..++|.|+..|.-..-..+... ++.+ .| . -|++-++.-.++ ++|+..+. -+.+..-
T Consensus 263 --Rl~Aa~~~gIP~Vvs~GalDmVnFg~~~----tvPe-~f-~----~R~~~~HNp~vTlmRTt~eE~~~~-g~~ia~kL 329 (406)
T PRK02399 263 --RLEAAARTGIPQVVSPGALDMVNFGAPD----TVPE-KF-R----GRLLYKHNPQVTLMRTTPEENRQI-GRWIAEKL 329 (406)
T ss_pred --HHHHHHHcCCCEEecCCceeeeecCCcc----cccH-hh-c----CCcceecCCcceeeecCHHHHHHH-HHHHHHHH
Confidence 3344566789999888864433222110 0100 00 0 022222222222 44443222 2222222
Q ss_pred hhCCCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 180 LKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 180 ~~~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
...+|||.+.||..=... . ..+..++ .++..++..++.+.+.| ....+++-.-.-...
T Consensus 330 n~a~gpv~vllP~~G~S~---~-D~~G~~f------~Dpead~alf~~l~~~l-~~~~~v~~~~~hIND 387 (406)
T PRK02399 330 NRAKGPVAFLIPLGGVSA---L-DRPGQPF------HDPEADAAFFDALEETV-TETRRLIEVPAHIND 387 (406)
T ss_pred hcCCCCeEEEEeCCCCcc---c-cCCCCCc------cChhHHHHHHHHHHHhC-CCCceEEECCCCCCC
Confidence 234799999999764331 1 1111121 12234555666666666 556778866665543
No 420
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=30.96 E-value=1.8e+02 Score=33.08 Aligned_cols=95 Identities=11% Similarity=-0.080 Sum_probs=55.1
Q ss_pred cEEEEeCCcchH-H---HHHHHHHhhhcCCc---EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhh--heeeEEE
Q 014091 91 GACVVTFTVGGL-S---VLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA--ITCSQAV 161 (431)
Q Consensus 91 gv~~~t~GpG~~-n---~~~gl~~A~~~~~P---vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~k~~~~ 161 (431)
.++++..|=|+. | ..=++--|...+.| +|+|+-..--... +. .+.... .....+..+. +-.+...
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~t-T~--~~~~~s---~~~~sd~Ak~~giP~~~VD 416 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFT-TS--PPDDRS---TPYCTDVAKMVQAPIFHVN 416 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEe-eC--HHHhcc---chhHHHHHeecCCcEEEEc
Confidence 688888887775 2 22333335567776 9998865321100 00 000000 0112223333 2334455
Q ss_pred cCCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 162 VNNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 162 v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
-.+++.+.++++.|++.+....||++|++=
T Consensus 417 G~D~~AV~~a~~~A~e~~r~g~gPvlIE~~ 446 (924)
T PRK09404 417 GDDPEAVVFATRLALEYRQKFKKDVVIDLV 446 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCEEEEEE
Confidence 567778888888899999888999999984
No 421
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=30.86 E-value=44 Score=31.28 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccch
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
.+++++++|+++++.||++|.|...
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~ 26 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISA 26 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCcccc
Confidence 3678899999999999999999864
No 422
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=30.56 E-value=75 Score=29.64 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=40.4
Q ss_pred hhCCEEEEeCCccCcccccccccCC-CCcceEEEccCcee--ecCCCcccc----ccHHHHHHHHHHHhcccc
Q 014091 301 ESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT--VGNGPSLGW----VFMADFLSALAKKLRKNT 366 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~--~~~~~~~~~----~d~~~~L~~L~~~l~~~~ 366 (431)
..+|++|++|+++.-.......... .+.+-+.|+.++.- .+ ..-+.+ .|..+..++|.+.|.++.
T Consensus 211 ~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~-~~r~rDv~~lgd~d~~~eaLvelLGW~e 282 (314)
T KOG2682|consen 211 LKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLG-MIRYRDVAWLGDCDQGVEALVELLGWKE 282 (314)
T ss_pred cccceEEEeccceeeeecccchhhhhhcCceeEecccccCcccc-CcccccchhhccHHHHHHHHHHHhCcHH
Confidence 4589999999998644333333322 24566777766652 11 111122 277889999999988755
No 423
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=30.50 E-value=1e+02 Score=28.09 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 222 EAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 222 ~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
+.++-++++++++. -+|.+++|.-+..-++.+.=++| .+.++|.++...-||
T Consensus 136 PTAL~~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L-~~~~vP~It~~G~kG 188 (204)
T PRK05575 136 PTALYKLKELIKEGKANPKFIIAVPVGFVGAAESKEEL-EKLDIPYITVRGRKG 188 (204)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHH-HhCCCCEEEEecCCC
Confidence 45677888988875 48989988766433343333333 558999999876665
No 424
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.47 E-value=3.7e+02 Score=25.67 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCc-cEEEEeCCcchH-HHHH
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL-SVLN 106 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-gv~~~t~GpG~~-n~~~ 106 (431)
+..++.|.+..=-++||+..+.... +...|.+ -+++.+...+..... .+....++ -|+++-|-.|-+ ..+.
T Consensus 121 ~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~-ig~~~~~~~d~~~~~----~~~~~~~~~Dv~i~iS~sG~t~e~i~ 195 (281)
T COG1737 121 ERAVELLAKARRIYFFGLGSSGLVASDLAYKLMR-IGLNVVALSDTHGQL----MQLALLTPGDVVIAISFSGYTREIVE 195 (281)
T ss_pred HHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHH-cCCceeEecchHHHH----HHHHhCCCCCEEEEEeCCCCcHHHHH
Confidence 4567777777767888844443332 3333433 255555544443332 25555553 355555666666 5888
Q ss_pred HHHHhhhcCCcEEEEeCCCCCc
Q 014091 107 AIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.+..|...++|+|.||......
T Consensus 196 ~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 196 AAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHHHHHCCCcEEEEcCCCCCc
Confidence 8889999999999999875443
No 425
>PLN02522 ATP citrate (pro-S)-lyase
Probab=30.39 E-value=5.9e+02 Score=27.47 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHHc--CCCEEEecCCCc-----hHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCc
Q 014091 27 GTLGRHLARRLVEI--GAKDVFSVPGDF-----NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (431)
Q Consensus 27 ~~~a~~l~~~L~~~--GV~~vFgvpG~~-----~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~Gp 99 (431)
-+.+-.+++.+.+. |+.++.++-|+. ...+++.|.++++.+.|...=| ..|.
T Consensus 177 GtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygE---------------------iGg~ 235 (608)
T PLN02522 177 GGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGE---------------------LGGR 235 (608)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe---------------------cCch
Confidence 34466677777775 558888887765 4566777777777887743333 0222
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCce-eee--ecCCC-C-hHHHHHHHhhheeeEEEcCCcchHHHHHHH
Q 014091 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-LHH--TIGLP-D-FTQELRCFQAITCSQAVVNNLGDAHELIDT 174 (431)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~-~~~--~~~~~-~-~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~ 174 (431)
-.-.++-.+..+. -+-|||++.+.+.....+.+.. -|. ..+.. . .......|+..- ..++++++++.+.+.+
T Consensus 236 ~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aG--v~vv~s~~El~~~~~~ 312 (608)
T PLN02522 236 DEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAG--AIVPTSFEALEAAIKE 312 (608)
T ss_pred hHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCC--CeEeCCHHHHHHHHHH
Confidence 3334444444433 4578877643332210000000 010 01100 0 012345566543 3466899999999999
Q ss_pred HHHHhhhC------CCcEEEEEccCCCC
Q 014091 175 AISTALKE------SKPVYISISCNLPG 196 (431)
Q Consensus 175 A~~~A~~~------~GPv~l~iP~dv~~ 196 (431)
+++..... +-|.-=.||+|+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (608)
T PLN02522 313 TFEKLVEEGKIIPVKEVTPPQIPEDLNS 340 (608)
T ss_pred HHHHHHhCCceeecCCCCCCCCCcchHH
Confidence 99988763 23455567777754
No 426
>PRK14974 cell division protein FtsY; Provisional
Probab=30.17 E-value=1.3e+02 Score=29.74 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
-...+..++..|......++++.....+.++.+.+..+++.+++|++.
T Consensus 153 KTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 153 KTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec
Confidence 455677778888776656666666666667889999999999999875
No 427
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=30.05 E-value=95 Score=30.24 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
+...+..+.+-+.+-|.|++-.+.. ..+++.++|++.++|++.|..
T Consensus 69 e~~~~~~~~~~~~~~P~iIvt~~~~---~p~~l~~~a~~~~ip~l~t~~ 114 (304)
T TIGR00679 69 EEQKQIIHNLLTLNPPAIILSKSFT---DPTVLLQVNETYQVPILKTDL 114 (304)
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEeCC
Confidence 3445566677777899888877764 458899999999999999886
No 428
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=29.93 E-value=1.2e+02 Score=33.53 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=26.1
Q ss_pred hhhCCEEEEeCCccCcccccccc---c----CCCCcceEEEccCce
Q 014091 300 VESADAYVFVGPIFNDYSSVGYS---L----LIKKEKAIIVQPHRV 338 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~~~~~~~~---~----~~~~~~~I~Id~d~~ 338 (431)
++++|+||++|+...+.....+. . ..++.|+|.||+-..
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t 242 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRT 242 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCC
Confidence 89999999999887663322221 1 113458999987654
No 429
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=29.81 E-value=3.8e+02 Score=28.93 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCC---CchHHHHHhhh---cCCCceEE-ecCchhHHHHhhhhhhhhcC--c-cEEEEe
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPG---DFNLTLLDHLI---AEPELNLV-GCCNELNAGYAADGYARSRG--V-GACVVT 96 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG---~~~~~l~~al~---~~~~i~~v-~~~hE~~A~~~A~gyar~tg--~-gv~~~t 96 (431)
+..++-..+.|...--+.+-|-.. +....+-+... ....=|+| .--.|.+.+.++-|.+.-.| + |..+..
T Consensus 357 R~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlv 436 (663)
T COG0021 357 RKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLV 436 (663)
T ss_pred HHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehh
Confidence 446666777777665554444332 22111111111 01112222 24568899999999888766 2 333322
Q ss_pred CCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHH
Q 014091 97 FTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (431)
Q Consensus 97 ~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~ 176 (431)
. .--+-+++--|-..++|++++-..-+-. .|.+...| |-.+|+..+|.+-.... =+|.+..+ ...|+
T Consensus 437 F---sdY~r~AiRlaALm~l~~~~V~THDSIg-vGEDGPTH------qPiEqLa~LRaiPN~~V--~RPaD~~E-t~~aw 503 (663)
T COG0021 437 F---SDYARPAVRLAALMGLPVIYVFTHDSIG-VGEDGPTH------QPVEQLASLRAIPNLSV--IRPADANE-TAAAW 503 (663)
T ss_pred h---HhhhhHHHHHHHhcCCCeEEEEecCcee-cCCCCCCC------CcHHHHHHhhccCCcee--EecCChHH-HHHHH
Confidence 2 2346688888889999999997654333 33333333 34678999998765433 23555444 36789
Q ss_pred HHhhhC-CCcEEEEEcc
Q 014091 177 STALKE-SKPVYISISC 192 (431)
Q Consensus 177 ~~A~~~-~GPv~l~iP~ 192 (431)
+.|... .||..|-+-+
T Consensus 504 ~~Al~~~~gPt~LiltR 520 (663)
T COG0021 504 KYALERKDGPTALILTR 520 (663)
T ss_pred HHHHhcCCCCeEEEEec
Confidence 999886 6999998875
No 430
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=29.77 E-value=1.2e+02 Score=26.28 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHH-HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLT-LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~-l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n 103 (431)
++..+.+..++.|+++||+|---+--.+=.| ++....+ .+ +-.|.-|++ .|.|.+.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~-------------------~a--~~~g~~viI--AgAGgAA 69 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAE-------------------EA--EERGVKVII--AGAGGAA 69 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHH-------------------HH--HHCCCeEEE--ecCcchh
Confidence 5567788889999999999876665443222 2222211 11 111222333 4777888
Q ss_pred HHHHHHHhhhcCCcEEEEe
Q 014091 104 VLNAIAGAYSENLPVICIV 122 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~ 122 (431)
-++|+..|+. ..|||-.-
T Consensus 70 HLPGmvAa~T-~lPViGVP 87 (162)
T COG0041 70 HLPGMVAAKT-PLPVIGVP 87 (162)
T ss_pred hcchhhhhcC-CCCeEecc
Confidence 8999988877 78887554
No 431
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=29.60 E-value=1.5e+02 Score=33.20 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCCccchh-------chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeec
Q 014091 222 EAAVEATADFLNK------AVKPVLVGGPNIRVA-------KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYW 288 (431)
Q Consensus 222 ~~~~~~~~~~L~~------a~rpvI~~G~g~~~~-------~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~ 288 (431)
+++++.+++.|++ .+...+..|.+.... .....+.+|+..++- .....+.........-..-++
T Consensus 141 dEAl~~Ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~- 217 (814)
T PRK14990 141 EEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGG--YLNHYGDYSSAQIAEGLNYTY- 217 (814)
T ss_pred HHHHHHHHHHHHHHHHhhCccceEEeecccccCcccccccccchHHHHHHHHhccC--cccCCCCccHHHHhhhhhcee-
Q ss_pred CCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCC--------CCcceEEEccCcee
Q 014091 289 GAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI--------KKEKAIIVQPHRVT 339 (431)
Q Consensus 289 G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~--------~~~~~I~Id~d~~~ 339 (431)
|.........-++++|+||++|+...+.......... ++.|+|.||+....
T Consensus 218 G~~~~~~~~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~ 276 (814)
T PRK14990 218 GGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTD 276 (814)
T ss_pred ccCCCCCCHHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCC
No 432
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.51 E-value=1e+02 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=16.5
Q ss_pred HHHHHHcCCCEEEecCCCchHHHHHhhh
Q 014091 34 ARRLVEIGAKDVFSVPGDFNLTLLDHLI 61 (431)
Q Consensus 34 ~~~L~~~GV~~vFgvpG~~~~~l~~al~ 61 (431)
.+.|++.|++.||+ ||+....+++.+.
T Consensus 103 ~~~l~~~Gv~~vF~-pgt~~~~iv~~l~ 129 (134)
T TIGR01501 103 EKRFKEMGFDRVFA-PGTPPEVVIADLK 129 (134)
T ss_pred HHHHHHcCCCEEEC-cCCCHHHHHHHHH
Confidence 45566677777766 5555555555554
No 433
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=29.32 E-value=1.6e+02 Score=22.60 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+..+.|++.+--++++-..+. .+..+.+..+++..++||....
T Consensus 15 ~vlkaIk~gkakLViiA~Da~-~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAE-EHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEeC
Confidence 455666665544555555554 3588999999999999996543
No 434
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=29.29 E-value=88 Score=28.45 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~-a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
.+.++-++++++++ .-+|.+++|.-+-.-++.+.=++|.+ .++|.++...-||
T Consensus 128 APTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~-~~vP~I~~~G~kG 181 (198)
T PF02570_consen 128 APTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQ-SGVPYITVRGRKG 181 (198)
T ss_dssp -HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHH-STS-EEEESSS--
T ss_pred cHHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHh-CCCCEEEEecCCC
Confidence 45678889999998 56898888876654445444444444 5999999775554
No 435
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.28 E-value=1.3e+02 Score=28.55 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
+....+.++.+.+++.+-++|+.-.... +...+.+.++|+.+|+|++.
T Consensus 190 ps~~~l~~l~~~ik~~~v~~if~e~~~~-~k~~~~l~~la~~~~~~v~~ 237 (264)
T cd01020 190 PSPADIAAFQNAIKNRQIDALIVNPQQA-SSATTNITGLAKRSGVPVVE 237 (264)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCC-cHHHHHHHHHHHHcCCCEEe
Confidence 3467899999999998889999887764 34667788899999999976
No 436
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=29.21 E-value=1.1e+02 Score=23.65 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
++++.+.|.+.+.-++++-..+......+.+..+++..++|++...
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 3466777777665555555555443344459999999999998866
No 437
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=29.19 E-value=68 Score=26.49 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+.+...++...+.+.|+|+.=.|- .....+.|++++++ +|++.++
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~-~~~~~~~l~~~a~~--~~vl~a~ 122 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGF-SDEQIDELEELAKK--IPVLIAP 122 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSS-HHHHHHHHHHHTTT--SEEEE-S
T ss_pred HHhHHHHHHHHhCCCCEEEECCCC-CHHHHHHHHHHhcc--CCEEEeC
Confidence 445556666666678877743333 33466888888888 8887654
No 438
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=28.66 E-value=1.9e+02 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHhhhCCEEEEeCCccCccc
Q 014091 298 EIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~ 317 (431)
+-+++||+||++|+...+..
T Consensus 216 ~D~~~Ad~iv~~G~Np~et~ 235 (806)
T TIGR02693 216 EDARLADTIVLWGANSYETQ 235 (806)
T ss_pred HHHHhCCEEEEECCChHHhh
Confidence 34679999999999875544
No 439
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=28.61 E-value=45 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHhhC------CCCCEEEecCChhhhhcccc
Q 014091 396 LFKHIQDML------SGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 396 ~~~~L~~~l------~~~~ivv~D~G~~~~~~~~~ 424 (431)
+++.|.+.+ |+++++++|+|.+..|...+
T Consensus 28 il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~ 62 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVVSGIGCSGRLPGYI 62 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCccccccCccc
Confidence 778888888 78999999999998765443
No 440
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.59 E-value=2.1e+02 Score=21.19 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
+.+..+++.+.+....++|+-+|+. .++.....+.|+..++|++.
T Consensus 18 ~~i~~~Ld~~~~~~~~~~lvhGga~-~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 18 ELIWAALDKVHARHPDMVLVHGGAP-KGADRIAARWARERGVPVIR 62 (71)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCC-CCHHHHHHHHHHHCCCeeEE
Confidence 4455555555543333445444552 25778889999999999876
No 441
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=28.56 E-value=3.4e+02 Score=26.35 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHc-CCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHHHH
Q 014091 32 HLARRLVEI-GAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLNA 107 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~~g 107 (431)
.+++.|.+. +-=++||.-.+.... +...|.. -++..+..-+... ..+ .....+.-.++++-|-.|.+ +.+..
T Consensus 38 ~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~-~~~--~~~~~~~~d~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 38 LACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEA-AHG--DLGMVTPQDVVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHh-hcc--ccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 355565554 455777776555433 2223332 3555554322111 111 11223323455555555555 79999
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 014091 108 IAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+..|+..++|+|.||+.....
T Consensus 114 ~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 114 IPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred HHHHHHCCCcEEEEECCCCCc
Confidence 999999999999999986554
No 442
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=28.49 E-value=3e+02 Score=29.51 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
.+.+++++.+.+.+.++.+|+-...+..--+...+.++.+++|++-+..+ +|.... =| | |+. ...+.++.
T Consensus 55 m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~-----IP~R~~--eG-Y-Gl~-~~~i~~~~ 124 (575)
T PRK11070 55 IEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYL-----VPNRFE--DG-Y-GLS-PEVVDQAH 124 (575)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEE-----eCCCCc--CC-C-CCC-HHHHHHHH
Confidence 46678888888999888888888888765577888999999998532222 343211 11 2 321 12333333
Q ss_pred -hhCCEEEEeCCccC
Q 014091 301 -ESADAYVFVGPIFN 314 (431)
Q Consensus 301 -~~aD~vl~lG~~~~ 314 (431)
+++|+||.+++-.+
T Consensus 125 ~~~~~LiItvD~Gi~ 139 (575)
T PRK11070 125 ARGAQLIVTVDNGIS 139 (575)
T ss_pred hcCCCEEEEEcCCcC
Confidence 36899999986554
No 443
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=28.39 E-value=76 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=22.8
Q ss_pred CEEEeCCccchhchHHHHHHHHHHhC
Q 014091 238 PVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 238 pvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
.+|++|.|.+...+.+.+++|++++.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~ 27 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLE 27 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHH
Confidence 47899999998888899999998885
No 444
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=28.24 E-value=1e+02 Score=31.17 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCEEEeCCccchhc---hHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH-hhhCCEEEEeCC
Q 014091 237 KPVLVGGPNIRVAK---AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI-VESADAYVFVGP 311 (431)
Q Consensus 237 rpvI~~G~g~~~~~---a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~-~~~aD~vl~lG~ 311 (431)
|.+|++.+--...+ --++|.+|+++.++-++ +||.|- +|++ |-.|-..+... +..-|+.|.+|+
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~--------VDEAHa--~Gv~-G~~GrG~~e~~g~~~~~vdi~~gT 239 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKYGALLY--------VDEAHA--VGVL-GPNGRGLAEHFGLEPEEVDIIVGT 239 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEE--------EEcccc--cccc-CCCCccHHHHhCCCCccceEEEEE
Confidence 45555543333322 25889999999997664 455544 6665 54333333232 344566677764
No 445
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=28.21 E-value=75 Score=35.31 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhch----HHHHHHHHHHhCCCeE
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKA----QKAFIELADATGYPIA 267 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a----~~~l~~lae~~~~Pv~ 267 (431)
.+.+.+++++|.++++++|+.|.|..++.. ...+..|+..+|.++.
T Consensus 456 ~~~I~~~A~~l~~a~~~~i~~G~g~~~~~~g~~~~~~i~~L~~ltG~~~~ 505 (776)
T PRK09129 456 AAAARAIAQSLANGERAAILLGNLAVNHPQAATLRALAQWIAKLTGATLG 505 (776)
T ss_pred HHHHHHHHHHHhcCCCeEEEECcccccCCCHHHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999998754332 3345556666776443
No 446
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.98 E-value=5e+02 Score=24.18 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~ 106 (431)
...++.|++.+++.|++.|+.+-|-.... +.+.+-.+.+..|... . ...+.....-|.. .|....+.
T Consensus 93 ~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~------~~~~v~~~at~~~~~~-~-l~~~~~~~~~g~i-----~G~~g~ll 159 (238)
T TIGR00161 93 YDMTNAIVEWMVRNNSRELISFNGMVVRE------KSQPVFGAANSQELIE-R-LKDLIEIFPFGNL-----NGISGTLL 159 (238)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCccCCC------CCCcEEEEECCHHHHH-H-HHHhcCcCCCCEE-----echhHHHH
Confidence 46899999999999999999998866531 2223333333333321 1 1221111111322 12333333
Q ss_pred HHHHhhhcCCcEEEEeCCCCC
Q 014091 107 AIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
+ .|...++|.++|-+....
T Consensus 160 ~--~a~~~gi~~i~Ll~et~~ 178 (238)
T TIGR00161 160 T--RCAVNDIPAICLLAETLG 178 (238)
T ss_pred H--HHHHcCCCEEEEEEeCCC
Confidence 3 667789999999988744
No 447
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=27.89 E-value=1.1e+02 Score=30.02 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCc
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGK 273 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gk 273 (431)
++...+..+.+-+-+-|.|++-.+.. ..+++.++|++.++|++.|...-
T Consensus 68 ~~~r~~~~~~l~~~~~P~iIvt~~~~---~p~~l~~~a~~~~ipll~t~~~t 116 (308)
T PRK05428 68 EEERKERLKKLFSLEPPCIIVTRGLE---PPPELLEAAKEAGIPLLRTPLST 116 (308)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHcCCcEEEeCCcH
Confidence 34556667777778999888887774 45779999999999999998743
No 448
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.82 E-value=4.1e+02 Score=24.99 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCEEEecCCCchHHHHHhhhc---CCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHHHH
Q 014091 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLNA 107 (431)
Q Consensus 32 ~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~~g 107 (431)
.+++.|.+..-=++||.-++ ..+-..+.. .-++..+.. .+...-..+ -..++.--++++-|-.|-+ ..+..
T Consensus 120 ~~~~~i~~a~~I~i~G~G~s--~~~A~~~~~~l~~~g~~~~~~-~d~~~~~~~--~~~~~~~Dv~I~iS~sg~~~~~~~~ 194 (278)
T PRK11557 120 ECVTMLRSARRIILTGIGAS--GLVAQNFAWKLMKIGINAVAE-RDMHALLAT--VQALSPDDLLLAISYSGERRELNLA 194 (278)
T ss_pred HHHHHHhcCCeEEEEecChh--HHHHHHHHHHHhhCCCeEEEc-CChHHHHHH--HHhCCCCCEEEEEcCCCCCHHHHHH
Confidence 34566666665577776444 333333321 235555443 222111111 1122224566666777766 67888
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 014091 108 IAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 108 l~~A~~~~~Pvl~I~g~~~~~ 128 (431)
+..|+..++|+|+||+.....
T Consensus 195 ~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 195 ADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred HHHHHHcCCCEEEEcCCCCCc
Confidence 999999999999999975443
No 449
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.81 E-value=1.1e+02 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCcc-chh-c----hHHHHHHHHHHhCCCeEecCC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNI-RVA-K----AQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~-~~~-~----a~~~l~~lae~~~~Pv~tt~~ 271 (431)
-+.+..+++.-++.+-|+|+..... ..+ + ....+..+++++++||+-...
T Consensus 28 lE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlD 83 (286)
T COG0191 28 LETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLD 83 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3567778888888999999965433 322 2 346788899999999998653
No 450
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=27.81 E-value=2.6e+02 Score=27.02 Aligned_cols=90 Identities=10% Similarity=0.135 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc-hhchHHHHHHHHHHhCCCeEecCC--------CcccCCCCCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAFIELADATGYPIAIMPS--------GKGLVPEHHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~--------gkg~~~~~hp~~~G~~~G~~ 291 (431)
..+.++.+++.|.+.++.+++...|.. -++-+..+.+.+...|++|..-+. +..-+|.+.-.|.|.+.+..
T Consensus 70 ~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~ 149 (287)
T PRK14994 70 EQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKS 149 (287)
T ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCC
Confidence 345677888999998888888433332 235566777777777999877552 22335544445777754332
Q ss_pred C--CHHHHHHhhhCCEEEEeC
Q 014091 292 S--SSFCGEIVESADAYVFVG 310 (431)
Q Consensus 292 ~--~~~~~~~~~~aD~vl~lG 310 (431)
+ .....+++...|.+++.=
T Consensus 150 ~~r~~~L~~l~~~~~t~V~ye 170 (287)
T PRK14994 150 KGRRDALKALEAEPRTLIFYE 170 (287)
T ss_pred chHHHHHHHHhcCCCeEEEEE
Confidence 3 223455566677766664
No 451
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.81 E-value=1e+02 Score=29.35 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
+.+.+++++++|.+|++ +.+.|.| .+.-..+.+.....++|.++..
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G-~S~~~A~~l~~~l~~~g~~~~~ 166 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLG-GSALVGRDLSFKLMKIGYRVAC 166 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeC-hhHHHHHHHHHHHHhCCCeeEE
No 452
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.56 E-value=63 Score=25.65 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--hhCCEEEEeC
Q 014091 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVG 310 (431)
Q Consensus 250 ~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~--~~aD~vl~lG 310 (431)
..-+++.+|++..|+-|+.+..-+---| +-.+|+|. |.. ....+.+ .++|+||+-+
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q~~~~~-~p~~~iG~--GK~--eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQKRRKP-DPKTYIGS--GKV--EEIKELIEELDADLVVFDN 65 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCC-Ccceeech--hHH--HHHHHHHhhcCCCEEEECC
Confidence 3568999999999999998765432111 22356663 322 2333333 4688888765
No 453
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=27.36 E-value=82 Score=30.34 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=30.5
Q ss_pred cCCCEEEeCCccch---------h------chHH--HHHHHHHHhCCCeEecCCCcccCCC
Q 014091 235 AVKPVLVGGPNIRV---------A------KAQK--AFIELADATGYPIAIMPSGKGLVPE 278 (431)
Q Consensus 235 a~rpvI~~G~g~~~---------~------~a~~--~l~~lae~~~~Pv~tt~~gkg~~~~ 278 (431)
..+||+|+|..-.+ . +-.+ .+-++||+++.||+|-..-.|..|.
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG 165 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPG 165 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 36899999865432 1 1123 3567999999999997777776663
No 454
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=27.30 E-value=1.6e+02 Score=27.72 Aligned_cols=43 Identities=2% Similarity=-0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
.+++++.|++++--++++|.|+.. ...-+.+..++++.+|+-+
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~Pk--QE~~~~~~~~~~~~~v~~g 188 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGSPK--QEIFMRDCRLVYPDALYMG 188 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcH--HHHHHHHHHHhCCCCEEEE
Confidence 356889999888779999999976 4555777888877776443
No 455
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=27.21 E-value=94 Score=34.96 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
.+.+.+++++|.++++++|+.|.+.........+..|+..+
T Consensus 480 ~~~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~~~l~~~l 520 (847)
T PRK08166 480 QAKADVIAQALAGAKKPLIISGTSAGSPAIIEAAANVAKAL 520 (847)
T ss_pred hHHHHHHHHHHhcCCCcEEEEeCcccChHHHHHHHHHHHHH
Confidence 34788999999999999999999886444455566666666
No 456
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=27.20 E-value=1.6e+02 Score=28.09 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCch-----------HHHHHhhhcCCCceEEecCch
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFN-----------LTLLDHLIAEPELNLVGCCNE 74 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~-----------~~l~~al~~~~~i~~v~~~hE 74 (431)
.+...+++.|.+.|++.||..++----... ..+-+.|.+.++|+++.-.|=
T Consensus 107 ~nV~~VG~~L~~~Le~~Gi~v~h~~t~~d~~~y~~sY~~Sr~tv~~~l~~~p~i~~~iDiHR 168 (268)
T PF07454_consen 107 VNVVKVGDRLAQELEKYGIGVIHDKTIHDYPSYNQSYKRSRETVKKALKENPDIKVVIDIHR 168 (268)
T ss_pred chHHHHHHHHHHHHHHCCCcEEEeCCCCCcchhHHHHHHHHHHHHHHHHHCCCceEEEEecC
Confidence 467889999999999999987774332111 123445566678888887764
No 457
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=27.16 E-value=81 Score=24.26 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=25.7
Q ss_pred CCCEEEe-CCccchhchHHHHHHHHHHhCCCeEecCC-Cccc
Q 014091 236 VKPVLVG-GPNIRVAKAQKAFIELADATGYPIAIMPS-GKGL 275 (431)
Q Consensus 236 ~rpvI~~-G~g~~~~~a~~~l~~lae~~~~Pv~tt~~-gkg~ 275 (431)
.-|.+++ |.|. ..+.|+++|++.|+|++.... ++.+
T Consensus 16 ~aP~VvAKG~g~----~A~~I~~~A~e~~VPi~~~~~LAr~L 53 (82)
T TIGR00789 16 KAPKVVASGVGE----VAERIIEIAKKHGIPIVEDPDLVDVL 53 (82)
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHcCCCEEeCHHHHHHH
Confidence 4576664 3333 568899999999999998764 4433
No 458
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.01 E-value=1.1e+02 Score=29.12 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.+.+++++++|.+|++ +.+.|.|.... ....+.....++|.++..
T Consensus 115 ~~~l~~~~~~i~~a~~-I~i~G~G~s~~-~A~~~~~~l~~~g~~~~~ 159 (278)
T PRK11557 115 EEKLHECVTMLRSARR-IILTGIGASGL-VAQNFAWKLMKIGINAVA 159 (278)
T ss_pred HHHHHHHHHHHhcCCe-EEEEecChhHH-HHHHHHHHHhhCCCeEEE
Confidence 5679999999999988 66677776432 334444444456666543
No 459
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.90 E-value=1.9e+02 Score=31.63 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=15.6
Q ss_pred HhhhCCEEEEeCCccCcccc
Q 014091 299 IVESADAYVFVGPIFNDYSS 318 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~ 318 (431)
-++++|+||++|+...+..+
T Consensus 220 Die~Ad~Il~~G~Np~et~p 239 (676)
T cd02756 220 DARLADTIVLWGNNPYETQT 239 (676)
T ss_pred HHHhCCEEEEECCChHHhCc
Confidence 36899999999998665443
No 460
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=26.86 E-value=1.8e+02 Score=23.10 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+..+.|++.+--++++-..+ ..+..+.+..+|+..++|++..
T Consensus 23 ~v~kai~~gkaklViiA~D~-~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNC-PKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 45566666665555555555 3468899999999999998664
No 461
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.75 E-value=1.8e+02 Score=25.64 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc------------hhchHHHHHHHHHHhCCCeEec
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR------------VAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~------------~~~a~~~l~~lae~~~~Pv~tt 269 (431)
-.+.++++++.+++....+|++..... .....+.++++|++.++|++.-
T Consensus 92 ~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 92 YKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEec
Confidence 456788888888876666677653321 1123578999999999999884
No 462
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.74 E-value=1.2e+02 Score=24.80 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=29.4
Q ss_pred cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 91 GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 91 gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
-++++.|..|.+ +.+..+..|+..+.|+|.||+.....
T Consensus 49 dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 455555666665 78889999999999999999976544
No 463
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.52 E-value=1.8e+02 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEE
Q 014091 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (431)
Q Consensus 236 ~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~ 308 (431)
++.++++..|...+=.....++.|+.-|..+.-.-.+.. ...+.+.++|++|+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~--------------------e~~~~~~~~DvvLl 54 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSET--------------------ELSEYIDNADVVLL 54 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechh--------------------HHHHhhhcCCEEEE
No 464
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=26.52 E-value=4.6e+02 Score=23.26 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=66.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhc-----CCCceEEecC-chhHHHHhhhh------hhh---hcC
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIA-----EPELNLVGCC-NELNAGYAADG------YAR---SRG 89 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~-----~~~i~~v~~~-hE~~A~~~A~g------yar---~tg 89 (431)
...++.|++.|..-|==-+||+-|+... +|...|.. ++.+.-|.-. +-..-..++-= |+| +.|
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g 107 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG 107 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC
Confidence 4578899999999998899999998764 45555532 2445444433 33333333322 333 234
Q ss_pred -cc---EEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCC
Q 014091 90 -VG---ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 90 -~g---v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
+| +-+.||| -..|.+.++-.|..-++-+|.+||...
T Consensus 108 ~~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~G 147 (176)
T COG0279 108 QPGDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDG 147 (176)
T ss_pred CCCCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 43 4445555 455999999999999999999999754
No 465
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=26.22 E-value=1.1e+02 Score=26.06 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
..+++++|.+..+|+|++-.-.. ..+.+.+|+..+++.+++-
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~p---~P~~V~Kia~~f~A~ly~P 106 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVSP---PPETVKKIARSFNAVLYTP 106 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC---CcHHHHHHHHHhCCcccCC
Confidence 45778999999999999875332 6788999999999987763
No 466
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.16 E-value=74 Score=35.15 Aligned_cols=84 Identities=12% Similarity=-0.036 Sum_probs=43.8
Q ss_pred HHHHHHH-HHhCCCeEecCCCcccCCC--CCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccc---cccC--
Q 014091 253 KAFIELA-DATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG---YSLL-- 324 (431)
Q Consensus 253 ~~l~~la-e~~~~Pv~tt~~gkg~~~~--~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~---~~~~-- 324 (431)
..+.+|+ ..+|.+-+.+...-.-.+. .+....| +..+......-+++||+||++|+...+..... +..+
T Consensus 162 ~~~~rf~~~~~Gs~N~~~~~~~C~~s~~~g~~~~~g---~~~~~~~~~~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~ 238 (735)
T cd02758 162 PFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMN---DLDGYPHVKPDFDNAEFALFIGTSPAQAGNPFKRQARRLAE 238 (735)
T ss_pred HHHHHHHHHcCCCCceeCCCCccccHHHHHHHHHhc---CCCCCCcCCcCHhhCcEEEEeCCCHHHhCCCcchHHHHHHH
Confidence 5688898 6788885543321111110 0111111 11011112234679999999999876443311 1111
Q ss_pred ---CCCcceEEEccCcee
Q 014091 325 ---IKKEKAIIVQPHRVT 339 (431)
Q Consensus 325 ---~~~~~~I~Id~d~~~ 339 (431)
-++.|+|.||+....
T Consensus 239 a~~~~G~KlVVVDPr~t~ 256 (735)
T cd02758 239 ARTEGNFKYVVVDPVLPN 256 (735)
T ss_pred HHHhCCCEEEEECCCCCc
Confidence 146799999988653
No 467
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=26.06 E-value=7.7 Score=36.94 Aligned_cols=143 Identities=18% Similarity=0.113 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCc----------hhHHHHhhhhhhhhcC-ccEEEEe
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCN----------ELNAGYAADGYARSRG-VGACVVT 96 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~h----------E~~A~~~A~gyar~tg-~gv~~~t 96 (431)
..+.++-+.+.|.+.|.-.-+...+. +.+.|. ++.++|.-.. |..-+.+=-||.-..| ...++.|
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~--~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~H 116 (265)
T PF04951_consen 39 VNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELP--PRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLAH 116 (265)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS---TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT--
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCC--cCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCccccc
Confidence 45778889999999999987655443 333332 4677776531 2222222235554444 3333334
Q ss_pred CCcchH------------HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCC
Q 014091 97 FTVGGL------------SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN 164 (431)
Q Consensus 97 ~GpG~~------------n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~ 164 (431)
+--|.. -..-.-+-|-.-++||++++|+.......+. .++ + ...+.+-+.+..++....+
T Consensus 117 T~~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~-----~~P--~-~~tv~vK~~~gr~aA~~~~ 188 (265)
T PF04951_consen 117 TYSGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKE-----LLP--W-IVTVAVKEGIGRYAAISLH 188 (265)
T ss_dssp SSSTTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHT-----TST--T--EEEEEEEEEETTEEEE--
T ss_pred eeccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHH-----hCC--C-ceEEEEecccCCCccccCC
Confidence 333322 2222233355579999999998533211111 011 0 0011122334446777788
Q ss_pred cchHHHHHHHHHHHhhhC
Q 014091 165 LGDAHELIDTAISTALKE 182 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~ 182 (431)
|+.+.+.|+++.+.|...
T Consensus 189 p~~a~~~i~~~a~~Al~~ 206 (265)
T PF04951_consen 189 PAEACERIREAAKEALER 206 (265)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999874
No 468
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=26.02 E-value=1.3e+02 Score=26.36 Aligned_cols=41 Identities=32% Similarity=0.346 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHh----cCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 221 LEAAVEATADFLNK----AVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 221 ~~~~~~~~~~~L~~----a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
+.+.+++++++|.+ +++ +++.|.|....-+...-.+|..+.
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~-I~i~G~G~S~~~A~~~~~~l~~~~ 59 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGK-ILICGNGGSAADAQHFAAELVKRF 59 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHHHhchh
Confidence 35567777777766 444 788888865433444444555443
No 469
>PRK15138 aldehyde reductase; Provisional
Probab=25.92 E-value=1.5e+02 Score=29.82 Aligned_cols=36 Identities=6% Similarity=0.123 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHH
Q 014091 224 AVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELA 259 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~la 259 (431)
.++++-+.++..+|++|+.|... ...+..+.+.+..
T Consensus 18 ~~~~l~~~l~~~~~~livt~~~~~~~~g~~~~v~~~L 54 (387)
T PRK15138 18 AIAGLREQIPADARVLITYGGGSVKKTGVLDQVLDAL 54 (387)
T ss_pred HHHHHHHHHhcCCeEEEECCCchHHhcCcHHHHHHHh
Confidence 44555566665688888887554 3334444444443
No 470
>TIGR01868 casD_Cas5e CRISPR system CASCADE complex protein CasD/Cas5e. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.
Probab=25.90 E-value=56 Score=30.47 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCeEecCCCcccCCCCCCCcceee
Q 014091 253 KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY 287 (431)
Q Consensus 253 ~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~ 287 (431)
..+.+|++.+.-|+++-+.|+-.+|.+.|++.|.+
T Consensus 128 ~~le~l~~AL~~P~f~lyLGRksCpp~~Pl~~~~~ 162 (230)
T TIGR01868 128 PALDEIAAALRRPVWPLYLGRKSCVPTRPLFLKEV 162 (230)
T ss_pred hHHHHHHHHHhCCCCCCccccccCCCCcccccccc
Confidence 55799999999999999999999999999999864
No 471
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=25.85 E-value=1.2e+02 Score=29.16 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
+++.+++++++|.+|+|..++ |.|... -....+..-..++|.++.... +.|-.. .....+
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~-G~g~S~-~vA~~~~~~l~~ig~~~~~~~-------d~~~~~-----------~~~~~~ 175 (281)
T COG1737 116 DEEALERAVELLAKARRIYFF-GLGSSG-LVASDLAYKLMRIGLNVVALS-------DTHGQL-----------MQLALL 175 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEE-EechhH-HHHHHHHHHHHHcCCceeEec-------chHHHH-----------HHHHhC
Confidence 467899999999999996655 544433 244555555566788876532 111110 122346
Q ss_pred hhCCEEEEeCCccCcccccccccC--CCCcceEEEccC
Q 014091 301 ESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPH 336 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d 336 (431)
..-|++|+|..+-....+...-.. -.+.++|.|...
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 778999999533221111111111 136788888655
No 472
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=25.81 E-value=2e+02 Score=32.68 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=55.3
Q ss_pred ccEEEEeCCcchH-H---HHHHHHHhhhcCCcE---EEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEc
Q 014091 90 VGACVVTFTVGGL-S---VLNAIAGAYSENLPV---ICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (431)
Q Consensus 90 ~gv~~~t~GpG~~-n---~~~gl~~A~~~~~Pv---l~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v 162 (431)
..++++..|=|+. | ..=++--|...+.|+ |+|+-..--.. .+. ..+........|....+ .+.-+...=
T Consensus 343 ~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~-tT~--~~~~~s~~~~sd~Ak~y-giP~~~VDG 418 (929)
T TIGR00239 343 KVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGF-TTN--PLDARSTPYCSDLAKMI-QAPIFHVNA 418 (929)
T ss_pred ceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEE-EEc--HHHhcCccCHHHHheec-CCCEEEECC
Confidence 4677888887774 2 233444466789996 77765421110 000 00000000111222222 233445555
Q ss_pred CCcchHHHHHHHHHHHhhhCCCcEEEEEc
Q 014091 163 NNLGDAHELIDTAISTALKESKPVYISIS 191 (431)
Q Consensus 163 ~~~~~~~~~i~~A~~~A~~~~GPv~l~iP 191 (431)
.+++.+.++++.|+..+....||++|++=
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~ 447 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLV 447 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 67778888888899999888999999984
No 473
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.73 E-value=1.7e+02 Score=28.95 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHHHHHHHh-cCCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 225 ~~~~~~~L~~-a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
++++.+.+++ .+|++|+.|..... ...+.+.+..+..++-+
T Consensus 11 ~~~l~~~~~~~~~r~liv~d~~~~~-~~~~~v~~~l~~~~~~~ 52 (345)
T cd08171 11 YKKIPEVCEKYGKKVVVIGGKTALA-AAKDKIKAALEQSGIEI 52 (345)
T ss_pred HHHHHHHHHhcCCEEEEEeCHHHHH-HHHHHHHHHHHHCCCeE
Confidence 4445455543 48899998876542 35666777666667654
No 474
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=25.64 E-value=2.2e+02 Score=23.88 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccch---hchHHHHHHHHHHhCCC
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRV---AKAQKAFIELADATGYP 265 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~---~~a~~~l~~lae~~~~P 265 (431)
.....++.++++.++...+.|++.+|... ....+...+.+...++|
T Consensus 18 ~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~ 66 (150)
T cd06259 18 ILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP 66 (150)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCC
Confidence 35678999999999998876666666542 23557788888888875
No 475
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=25.61 E-value=4.1e+02 Score=26.67 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=38.8
Q ss_pred EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCC-CCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCc
Q 014091 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP-EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (431)
Q Consensus 239 vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~-~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~ 312 (431)
++++|.|..+ .+++.++++..|+..+. ..+ +..+ ++...+++- .. .....++..||++++.|+.
T Consensus 265 liivG~g~~r---~~~l~~~~~~~gl~~~~-~~~-~~~~~~~~~v~l~~---~~--~el~~~y~~aDi~~v~~S~ 329 (425)
T PRK05749 265 LILVPRHPER---FKEVEELLKKAGLSYVR-RSQ-GEPPSADTDVLLGD---TM--GELGLLYAIADIAFVGGSL 329 (425)
T ss_pred EEEcCCChhh---HHHHHHHHHhCCCcEEE-ccC-CCCCCCCCcEEEEe---cH--HHHHHHHHhCCEEEECCCc
Confidence 7888986632 26788999999987533 223 2222 222333321 11 3566788999998886654
No 476
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.54 E-value=1.5e+02 Score=28.54 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT 286 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~ 286 (431)
.+..+.+++. ..+.++++|.-. +.....+..++++.++|+++....-..+.+.+|++.-+
T Consensus 54 a~~~a~~li~-~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~fr~ 113 (332)
T cd06344 54 AKKVADELVK-DPEILGVVGHYS--SDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFFRT 113 (332)
T ss_pred HHHHHHHHhc-ccCceEEEcCCC--cHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEEEe
Confidence 3444444444 457777888643 33556778899999999998654333343456666544
No 477
>PRK06683 hypothetical protein; Provisional
Probab=25.48 E-value=1.9e+02 Score=22.16 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+..+.|++.+--++++-..+.. +..+.+..+++..++|+++..
T Consensus 18 ~v~kaik~gkaklViiA~Da~~-~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADM-RLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHhcCCCEEEEC
Confidence 4556666555444454444532 478899999999999998755
No 478
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=25.40 E-value=1.2e+02 Score=30.21 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
.+.+.|++-|-|++++|....+---.++.+++++.+...
T Consensus 297 ~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~ 335 (368)
T COG2021 297 DLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAA 335 (368)
T ss_pred cHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhcccc
Confidence 445667777888999887665444567777777776543
No 479
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=25.24 E-value=2.6e+02 Score=26.66 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCC------EEEeCCccc-hhchHHHHHHHHHHhCCCeEecCCC--cccCCCCCCCcceeecCCCCCHHHH
Q 014091 227 ATADFLNKAVKP------VLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSG--KGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 227 ~~~~~L~~a~rp------vI~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~g--kg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
-+-+.|.++.|| +++.|+... .-+..+.|..||+++|+.|=.|-.+ .|.+|.+ +.+|- .|-
T Consensus 202 ~v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpNd--lQiGQ----TGK---- 271 (336)
T KOG3954|consen 202 WVSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPND--LQIGQ----TGK---- 271 (336)
T ss_pred HHHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCCc--ccccc----ccc----
Confidence 344566667776 567665554 4456789999999999999877654 4666654 33443 221
Q ss_pred HHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCcccc------ccHHHHHHHHHHHhcc
Q 014091 298 EIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGW------VFMADFLSALAKKLRK 364 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~------~d~~~~L~~L~~~l~~ 364 (431)
+--..+-|.+|-+-.-.-..+. ...+-++-|+-||. ...|.. .|+=.++..|.+.|++
T Consensus 272 --IVAPeLYiAvGisGAIQHLAGm---KDSKvIvAINkDpd----APIFqvAD~GlvgDLfkiVPELtekL~k 335 (336)
T KOG3954|consen 272 --IVAPELYIAVGISGAIQHLAGM---KDSKVIVAINKDPD----APIFQVADYGLVGDLFKIVPELTEKLPK 335 (336)
T ss_pred --eeccceEEEEeccHHHHHhhcC---ccceEEEEecCCCC----CCceeeecccchhhHHHHhHHHHHhccC
Confidence 1245778888844221000111 12334566776664 223322 2666677777777764
No 480
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.82 E-value=1.5e+02 Score=28.61 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc-cCCCCCCCccee
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG-LVPEHHPHFIGT 286 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg-~~~~~hp~~~G~ 286 (431)
.++.+.+++. .+++..++|.... .....+.+++++.++|+++...+-. +..+.+|++..+
T Consensus 59 a~~~~~~li~-~~~v~aviG~~~s--~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~ 119 (345)
T cd06338 59 AARAYERLIT-QDKVDFLLGPYSS--GLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGT 119 (345)
T ss_pred HHHHHHHHHh-hcCccEEecCCcc--hhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEe
Confidence 4445555554 4567777886543 3667788999999999998654332 223556776665
No 481
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=24.82 E-value=62 Score=30.59 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP 277 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~ 277 (431)
+++++.+|++++|.|++.|.|+..+ .|+|-+- ...|++.
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~------------sGIpdFR--~~~Gl~~ 40 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAE------------SGIPDFR--SKDGLWS 40 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccc------------cCCCccc--CCCCCCC
Confidence 4678899999999999999999642 6777655 2235666
No 482
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=24.81 E-value=2e+02 Score=23.14 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
++.+.|++.+-.+++.-..+. .+..+.+..+|+..++|++...
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s-~~~kkki~~~~~~~~vp~~~~~ 66 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDIS-ENSKNKFKNYCNKYNIPYIEGY 66 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCC-HhHHHHHHHHHHHcCCCEEEec
Confidence 445666665555555544443 3578999999999999997753
No 483
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.80 E-value=5e+02 Score=25.00 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHHHHc-CCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH-HHHH
Q 014091 32 HLARRLVEI-GAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL-SVLN 106 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~-n~~~ 106 (431)
.+++.|.+. +.=++||+-++.... +..-|.+ -+++.+...+ ..+-...+...+ --++++-|..|.+ +.+-
T Consensus 33 ~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~----~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 107 (321)
T PRK11543 33 RAANIILHCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHP----AEALHGDLGMIESRDVMLFISYSGGAKELDL 107 (321)
T ss_pred HHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHc-CCCceeecCh----HHHhhCCcCccCCCCEEEEEeCCCCcHHHHH
Confidence 344555444 344788887665532 2333333 3555444322 122212222223 4567777778876 7889
Q ss_pred HHHHhhhcCCcEEEEeCCCCCc
Q 014091 107 AIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
.+..|+..++|+|.||+.....
T Consensus 108 ~~~~ak~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 108 IIPRLEDKSIALLAMTGKPTSP 129 (321)
T ss_pred HHHHHHHcCCeEEEEECCCCCh
Confidence 9999999999999999976543
No 484
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.77 E-value=1.2e+02 Score=27.45 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=27.7
Q ss_pred HHHHHHHHHH----HhcCCCEEEeCCccchhchHHHHHHHH-----HHhCCCeEe
Q 014091 223 AAVEATADFL----NKAVKPVLVGGPNIRVAKAQKAFIELA-----DATGYPIAI 268 (431)
Q Consensus 223 ~~~~~~~~~L----~~a~rpvI~~G~g~~~~~a~~~l~~la-----e~~~~Pv~t 268 (431)
+.+++++++| .+++| ++++|.|.....+.....+|. ++.++|++.
T Consensus 25 ~~i~~a~~~l~~~l~~~~r-I~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~ 78 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNK-ILCCGNGTSAANAQHFAASMINRFETERPSLPAIA 78 (196)
T ss_pred HHHHHHHHHHHHHHHcCCE-EEEEECcHHHHHHHHHHHHHhccccccCCCcceEE
Confidence 3455555555 55555 677798886655666666665 366677663
No 485
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.75 E-value=2.2e+02 Score=25.46 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=28.9
Q ss_pred HHHHHHHHH--hcCCCEEEeCCccchh--chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 225 VEATADFLN--KAVKPVLVGGPNIRVA--KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 225 ~~~~~~~L~--~a~rpvI~~G~g~~~~--~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
++++++.|. +.++|.+++-..-... -..+++++..+.-+-||+- .+|+ | +.-..+.|
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~Ll--------------lFGT--G---wGL~~ev~ 150 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEEEDRPVLL--------------LFGT--G---WGLAPEVM 150 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH--S-EEE--------------EE----T---T---HHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEE--------------EecC--C---CCCCHHHH
Confidence 344444443 4688888865433222 2467777777665666543 3343 2 22345788
Q ss_pred hhCCEEE
Q 014091 301 ESADAYV 307 (431)
Q Consensus 301 ~~aD~vl 307 (431)
+.||.||
T Consensus 151 ~~~D~iL 157 (185)
T PF09936_consen 151 EQCDYIL 157 (185)
T ss_dssp TT-SEEB
T ss_pred HhcCeeE
Confidence 8899876
No 486
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.72 E-value=75 Score=24.19 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCEEEeCCccchhchH-HHHHHHHHHhCCCeEe
Q 014091 237 KPVLVGGPNIRVAKAQ-KAFIELADATGYPIAI 268 (431)
Q Consensus 237 rpvI~~G~g~~~~~a~-~~l~~lae~~~~Pv~t 268 (431)
|.++++|.|..++-.. ..+++.+++.|+.+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~ 33 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEV 33 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEE
Confidence 4588999999877655 9999999999966544
No 487
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=24.72 E-value=3.8e+02 Score=24.03 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC--CCceEEecCchhHHHHhhhhhh
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE--PELNLVGCCNELNAGYAADGYA 85 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~~i~~v~~~hE~~A~~~A~gya 85 (431)
.-..+++...+.|++.|++.++--++.....|++.+.+. .+-+++..+.+....-+++...
T Consensus 80 ~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~ 142 (239)
T cd06578 80 KIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALR 142 (239)
T ss_pred EEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHH
Confidence 345677888888888888888865666667788877763 4677777777766555555443
No 488
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.67 E-value=1.8e+02 Score=29.14 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEE
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV 69 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v 69 (431)
.-+.+++.|+++||+++|-+-|+..+.....|.+..+|++|
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vI 135 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLV 135 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEE
Confidence 45889999999999999999999999888777653267777
No 489
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=24.67 E-value=2.4e+02 Score=26.70 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHh-hhcCCCceEEecCchhHHHHhhhh-------------hhh------
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH-LIAEPELNLVGCCNELNAGYAADG-------------YAR------ 86 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~a-l~~~~~i~~v~~~hE~~A~~~A~g-------------yar------ 86 (431)
..+++.=++.|+++|+..+|-=.+.....|++. +...++-++...|.+.+-...+++ |-|
T Consensus 99 ~AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~ 178 (266)
T PRK08811 99 LSVGEGTARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGLLAPTLQQRGARILRADVYQRVPLRLR 178 (266)
T ss_pred EEECHHHHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEEeEEEEEeeeCCCCC
Confidence 456777777778888777764344444555554 222223444545555544433332 321
Q ss_pred --------hcC-ccEEEEeCCcchHHHHHHHHH---hhhcCCcEEEEeCC
Q 014091 87 --------SRG-VGACVVTFTVGGLSVLNAIAG---AYSENLPVICIVGG 124 (431)
Q Consensus 87 --------~tg-~gv~~~t~GpG~~n~~~gl~~---A~~~~~Pvl~I~g~ 124 (431)
..+ ..+++.||+-.+.|++..+.. .+..+.++++|+-.
T Consensus 179 ~~~~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~r 228 (266)
T PRK08811 179 ASTLAALSRAAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDR 228 (266)
T ss_pred HHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHH
Confidence 123 457777777777777665543 34567777777643
No 490
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=24.60 E-value=1.4e+02 Score=29.57 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
+.+.++-++++++++.-+|-+++|.-+..-++.+.=.+| ...++|.+|+..-||
T Consensus 264 nAPTAL~~l~~li~~~~~palvig~PVGFV~a~esKe~L-~~~~vP~I~~~G~kG 317 (335)
T PRK05782 264 NAPTALIETLKLVKEGVDIPFIVATPPGFTNAKEVKEAL-IESGIPSVVLRGTYG 317 (335)
T ss_pred CcHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHH-HhCCCCEEEEecCCC
Confidence 356778888899888568888888766443443333334 347899999876665
No 491
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=24.52 E-value=1.8e+02 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccC
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLV 276 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~ 276 (431)
.++.+.+++. ++...++|.... .....+..+++..++|+++....-..+
T Consensus 51 a~~~a~~li~--~~V~aiiG~~~S--~~~~av~~i~~~~~ip~is~~~~~~~~ 99 (324)
T cd06368 51 LTNKACDLLS--QGVAAIFGPSSS--SSANTVQSICDALEIPHITTSWSPNPK 99 (324)
T ss_pred HHHHHHHHHh--cCcEEEECCCCH--HHHHHHHHHHhccCCCcEEecCCcCCC
Confidence 4566677775 677788887553 356779999999999999865543333
No 492
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=24.45 E-value=4.5e+02 Score=22.53 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=53.6
Q ss_pred HHHHHHHHHH-cCCCE--EEecCCCchH--HHHHhhhcCC--C--ceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCc
Q 014091 30 GRHLARRLVE-IGAKD--VFSVPGDFNL--TLLDHLIAEP--E--LNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99 (431)
Q Consensus 30 a~~l~~~L~~-~GV~~--vFgvpG~~~~--~l~~al~~~~--~--i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~Gp 99 (431)
-+.+++.+++ .++++ ++|+-|+... .+.+++.+.. + +.++...+. .++....+.... -.++++.|-.
T Consensus 7 i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~---~~~~~~~~~~~~~~tlvi~iSkS 83 (158)
T cd05015 7 IKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDP---DDLAELLKKLDPETTLFIVISKS 83 (158)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCH---HHHHHHHHhCCcccEEEEEEECC
Confidence 3456677777 47885 4677665542 5666665421 3 435555442 222333334433 4456666666
Q ss_pred chH-HHHHHHHHhhh---------cCCcEEEEeCC
Q 014091 100 GGL-SVLNAIAGAYS---------ENLPVICIVGG 124 (431)
Q Consensus 100 G~~-n~~~gl~~A~~---------~~~Pvl~I~g~ 124 (431)
|.+ ..+.....|+. .+..+|+||..
T Consensus 84 G~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~ 118 (158)
T cd05015 84 GTTLETLANARLAREWLEEAGGDDLAKHFVAITDN 118 (158)
T ss_pred cCCHHHHHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 655 56677766666 67899999973
No 493
>PRK06091 membrane protein FdrA; Validated
Probab=24.37 E-value=8.8e+02 Score=25.84 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHc--CCCEEEecCCC---------chHHHHHhhhcCCCceEEecCc
Q 014091 27 GTLGRHLARRLVEI--GAKDVFSVPGD---------FNLTLLDHLIAEPELNLVGCCN 73 (431)
Q Consensus 27 ~~~a~~l~~~L~~~--GV~~vFgvpG~---------~~~~l~~al~~~~~i~~v~~~h 73 (431)
-+++..+...+.+. |+.++.|+-|. ....+++.|.++++.+.|...-
T Consensus 203 Gtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~ 260 (555)
T PRK06091 203 GTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVS 260 (555)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence 45678888888774 56788888776 4667888888778888775544
No 494
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.35 E-value=6e+02 Score=27.80 Aligned_cols=127 Identities=20% Similarity=0.130 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCCc----hHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhh----cCccEEEEeCCcch
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDF----NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS----RGVGACVVTFTVGG 101 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~----~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~----tg~gv~~~t~GpG~ 101 (431)
-+-|++.-++++|+.|. ||-. ...|.+++.+ .+|+||...-|-....-----||. .|..++=.|-||=
T Consensus 95 ideii~iak~~~vdavH--PGYGFLSErsdFA~av~~-AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPi- 170 (1176)
T KOG0369|consen 95 IDEIISIAKKHNVDAVH--PGYGFLSERSDFAQAVQD-AGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPI- 170 (1176)
T ss_pred HHHHHHHHHHcCCCeec--CCccccccchHHHHHHHh-cCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCc-
Confidence 36788999999999875 5533 3568888876 599999998886654332233343 3433443343332
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 181 (431)
+..=-++.=+...+.|+|+=++--. .++. -..+.+.|++.+.++||...|..
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGG-----GGRG-----------------------mRvVr~~e~vee~f~Ra~SEA~a 222 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGG-----GGRG-----------------------MRVVRSGEDVEEAFQRAYSEALA 222 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccC-----CCcc-----------------------eEEeechhhHHHHHHHHHHHHHH
Confidence 2233444455678999998775321 1110 12456778899999999999877
Q ss_pred C--CCcEEE
Q 014091 182 E--SKPVYI 188 (431)
Q Consensus 182 ~--~GPv~l 188 (431)
. .|.+|+
T Consensus 223 aFGnG~~Fv 231 (1176)
T KOG0369|consen 223 AFGNGTLFV 231 (1176)
T ss_pred hcCCceeeH
Confidence 3 465543
No 495
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=24.35 E-value=1.3e+02 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchh----chHHHHHHHHHHhC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATG 263 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~----~a~~~l~~lae~~~ 263 (431)
.++++++++.|.++++++|+.|.|...+ ....++..++..++
T Consensus 228 ~~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~ 273 (421)
T TIGR03129 228 KEKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLN 273 (421)
T ss_pred HHHHHHHHHHHHhCCceEEEEecccccccCcchHHHHHHHHHHHhC
Confidence 4578899999999999999999887432 23445556665554
No 496
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.33 E-value=1.9e+02 Score=27.56 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCC
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
.++.+.+++.+ ++...++|.... .....+..++++.++|+++....
T Consensus 55 ~~~~~~~li~~-~~v~aiiG~~~s--~~~~~v~~~~~~~~ip~i~~~~~ 100 (334)
T cd06347 55 AANAATRLIDQ-DKVVAIIGPVTS--GATLAAGPIAEDAKVPMITPSAT 100 (334)
T ss_pred HHHHHHHHhcc-cCeEEEEcCCcc--HhHHHhHHHHHHCCCeEEcCCCC
Confidence 44555555543 566777776442 36677889999999999996654
No 497
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=24.11 E-value=2.3e+02 Score=25.32 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHhc--CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC------------CcccCCCC-CCCcceeecCCCCC
Q 014091 229 ADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS------------GKGLVPEH-HPHFIGTYWGAVSS 293 (431)
Q Consensus 229 ~~~L~~a--~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~------------gkg~~~~~-hp~~~G~~~G~~~~ 293 (431)
++++.++ +-|+|++..|....+..+-+.++++++|+.+..... |...+..+ +..+.-. ...
T Consensus 9 l~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~----~K~ 84 (191)
T TIGR02055 9 VDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGI----RKV 84 (191)
T ss_pred HHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHH----HhH
Confidence 4555554 477999999988777888999999999987766532 11222233 2233322 123
Q ss_pred HHHHHHhhhCCEEEEeCCccCccc
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~ 317 (431)
....+++++.|++| .|.|-.+..
T Consensus 85 ~Pl~~~l~~~~~~i-~G~Rr~Es~ 107 (191)
T TIGR02055 85 EPLKRALAGVSAWI-TGLRRDQSP 107 (191)
T ss_pred HHHHHHHhcCCEEE-EEeccccCc
Confidence 35566777777665 798887654
No 498
>PRK07714 hypothetical protein; Provisional
Probab=23.92 E-value=2.3e+02 Score=22.42 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+..+.|++.+--++++-..+.. +..+.+..+|+..++|++..
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~-~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASV-NTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEe
Confidence 4556666655555555555543 37788999999999999764
No 499
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=23.79 E-value=2.3e+02 Score=28.15 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 225 ~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
++++-+.+.+ .+|++|+.|..+.. ...+.+.+..+..++.+.
T Consensus 19 ~~~l~~~l~~~~~~~~livtd~~~~~-~~~~~v~~~L~~~gi~~~ 62 (358)
T PRK00002 19 LSELGELLAPLKGKKVAIVTDETVAP-LYLEKLRASLEAAGFEVD 62 (358)
T ss_pred HHHHHHHHHhcCCCeEEEEECCchHH-HHHHHHHHHHHhcCCceE
Confidence 3344444443 57899999987754 467777777777777554
No 500
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=23.77 E-value=1.4e+02 Score=25.44 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCC----EEEecCCCchHHHHH
Q 014091 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD 58 (431)
Q Consensus 31 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~ 58 (431)
+--.+.|+++|++ .+|-+||...+|+.-
T Consensus 20 ~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~ 51 (138)
T TIGR00114 20 KGAIDALKRLGAEVDNIDVIWVPGAFELPLAV 51 (138)
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 3445789999987 799999999999876
Done!