Query 014091
Match_columns 431
No_of_seqs 170 out of 1274
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 1.5E-71 5E-76 585.6 37.8 401 26-429 2-403 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 6.5E-71 2.2E-75 580.4 41.1 397 26-428 2-398 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 2E-71 6.8E-76 584.1 36.0 402 25-429 2-403 (563)
4 1ovm_A Indole-3-pyruvate decar 100.0 2.5E-69 8.5E-74 567.0 33.6 394 26-429 4-398 (552)
5 4feg_A Pyruvate oxidase; carba 100.0 4.9E-69 1.7E-73 569.5 29.5 389 24-428 8-409 (603)
6 2vbf_A Branched-chain alpha-ke 100.0 4E-68 1.4E-72 559.6 33.2 392 26-429 24-415 (570)
7 2nxw_A Phenyl-3-pyruvate decar 100.0 1.6E-67 5.5E-72 554.2 35.7 387 26-424 20-410 (565)
8 3eya_A Pyruvate dehydrogenase 100.0 2.9E-68 1E-72 558.1 29.2 382 26-427 2-394 (549)
9 1ybh_A Acetolactate synthase, 100.0 8.8E-68 3E-72 559.0 30.2 390 25-428 10-415 (590)
10 1t9b_A Acetolactate synthase, 100.0 4.2E-67 1.4E-71 559.2 32.6 393 24-428 79-502 (677)
11 2pgn_A Cyclohexane-1,2-dione h 100.0 1.6E-66 5.5E-71 549.1 30.8 388 26-428 3-413 (589)
12 1ozh_A ALS, acetolactate synth 100.0 4.7E-66 1.6E-70 543.1 30.3 378 27-422 11-402 (566)
13 1q6z_A BFD, BFDC, benzoylforma 100.0 5.3E-66 1.8E-70 538.9 28.8 377 26-423 1-385 (528)
14 2uz1_A Benzaldehyde lyase; thi 100.0 8E-67 2.8E-71 548.9 21.3 384 26-427 3-407 (563)
15 2pan_A Glyoxylate carboligase; 100.0 1.9E-65 6.4E-70 543.8 29.6 389 26-428 26-431 (616)
16 2iht_A Carboxyethylarginine sy 100.0 1E-65 3.5E-70 541.5 25.8 387 26-427 11-424 (573)
17 1v5e_A Pyruvate oxidase; oxido 100.0 7.9E-65 2.7E-69 536.0 30.6 383 25-428 2-402 (590)
18 2x7j_A 2-succinyl-5-enolpyruvy 100.0 9.6E-66 3.3E-70 544.6 22.1 387 25-423 29-437 (604)
19 3lq1_A 2-succinyl-5-enolpyruvy 100.0 1.8E-65 6.2E-70 539.9 20.3 382 26-422 10-417 (578)
20 2q28_A Oxalyl-COA decarboxylas 100.0 3.1E-65 1.1E-69 537.1 21.6 378 25-420 6-401 (564)
21 2c31_A Oxalyl-COA decarboxylas 100.0 4.2E-65 1.4E-69 536.4 19.5 379 25-421 8-407 (568)
22 3hww_A 2-succinyl-5-enolpyruvy 100.0 4.2E-62 1.4E-66 512.0 14.8 368 26-418 7-394 (556)
23 3cf4_G Acetyl-COA decarboxylas 99.9 6.8E-24 2.3E-28 188.0 2.2 138 223-363 22-168 (170)
24 1ytl_A Acetyl-COA decarboxylas 99.7 4.6E-19 1.6E-23 156.3 0.8 104 225-334 24-142 (174)
25 1yd7_A 2-keto acid:ferredoxin 99.6 1.2E-15 4.1E-20 152.5 8.3 166 22-195 18-190 (395)
26 2c42_A Pyruvate-ferredoxin oxi 97.5 0.0012 4.1E-08 74.3 15.2 155 26-192 6-172 (1231)
27 2ozl_B PDHE1-B, pyruvate dehyd 94.9 0.061 2.1E-06 52.0 8.0 156 24-194 12-187 (341)
28 1pno_A NAD(P) transhydrogenase 94.3 0.014 4.6E-07 49.5 1.5 84 225-312 13-108 (180)
29 1d4o_A NADP(H) transhydrogenas 94.3 0.015 5.1E-07 49.4 1.8 85 225-313 12-108 (184)
30 2bru_C NAD(P) transhydrogenase 94.1 0.014 4.7E-07 49.6 1.1 86 223-312 18-115 (186)
31 1djl_A Transhydrogenase DIII; 94.1 0.016 5.5E-07 50.3 1.6 85 226-313 36-131 (207)
32 2fsv_C NAD(P) transhydrogenase 93.9 0.016 5.4E-07 50.2 1.2 85 225-312 36-131 (203)
33 1umd_B E1-beta, 2-OXO acid deh 93.5 0.3 1E-05 46.7 9.6 114 67-195 52-177 (324)
34 1s5p_A NAD-dependent deacetyla 92.5 0.1 3.5E-06 47.6 4.4 69 295-363 160-231 (235)
35 1w85_B Pyruvate dehydrogenase 92.5 0.38 1.3E-05 45.9 8.7 116 66-196 50-177 (324)
36 1qs0_B 2-oxoisovalerate dehydr 92.4 0.84 2.9E-05 43.8 11.0 114 67-195 53-178 (338)
37 3mos_A Transketolase, TK; thia 92.2 2.1 7.2E-05 44.6 14.5 155 27-193 313-473 (616)
38 1efv_A Electron transfer flavo 92.0 0.25 8.4E-06 47.1 6.6 117 232-364 194-314 (315)
39 2hjh_A NAD-dependent histone d 91.9 0.2 6.9E-06 48.6 5.9 72 295-366 248-320 (354)
40 2r8o_A Transketolase 1, TK 1; 90.9 1.7 5.9E-05 45.7 12.3 156 26-193 354-521 (669)
41 1o97_D Electron transferring f 90.7 0.35 1.2E-05 46.1 6.2 116 233-363 200-319 (320)
42 3kom_A Transketolase; rossmann 90.7 1.3 4.6E-05 46.5 11.1 116 67-193 404-522 (663)
43 2o1s_A 1-deoxy-D-xylulose-5-ph 90.7 1.7 5.8E-05 45.4 11.9 152 26-194 318-480 (621)
44 2bfd_B 2-oxoisovalerate dehydr 90.6 0.56 1.9E-05 45.1 7.7 154 27-195 21-194 (342)
45 4iao_A NAD-dependent histone d 89.5 0.39 1.3E-05 48.1 5.5 72 295-366 386-458 (492)
46 1w85_A Pyruvate dehydrogenase 89.5 0.44 1.5E-05 46.4 5.8 113 77-195 147-268 (368)
47 3pki_A NAD-dependent deacetyla 89.3 0.36 1.2E-05 46.4 5.0 70 295-364 199-271 (355)
48 3l84_A Transketolase; TKT, str 89.3 1.6 5.3E-05 45.7 10.2 116 67-194 383-501 (632)
49 1yc5_A NAD-dependent deacetyla 89.3 0.26 9E-06 45.2 3.9 69 295-363 173-244 (246)
50 2e6k_A Transketolase; structur 89.2 1.2 4.1E-05 46.8 9.3 117 66-193 397-516 (651)
51 1ik6_A Pyruvate dehydrogenase; 89.2 0.99 3.4E-05 43.9 8.1 115 66-195 98-224 (369)
52 1m2k_A Silent information regu 88.8 0.35 1.2E-05 44.4 4.3 69 295-363 170-241 (249)
53 3k35_A NAD-dependent deacetyla 88.7 0.44 1.5E-05 45.3 5.1 71 295-365 199-272 (318)
54 1efp_A ETF, protein (electron 88.7 0.55 1.9E-05 44.5 5.8 113 233-362 190-307 (307)
55 2o1x_A 1-deoxy-D-xylulose-5-ph 88.4 1.7 5.8E-05 45.4 9.9 151 26-194 321-482 (629)
56 3c2q_A Uncharacterized conserv 88.4 0.33 1.1E-05 45.6 3.8 98 259-364 234-340 (345)
57 1ma3_A SIR2-AF2, transcription 88.2 0.32 1.1E-05 44.8 3.7 69 295-363 176-247 (253)
58 3riy_A NAD-dependent deacetyla 87.8 0.39 1.3E-05 44.8 4.0 65 295-359 205-272 (273)
59 3glr_A NAD-dependent deacetyla 87.6 0.83 2.9E-05 42.7 6.2 70 297-366 192-267 (285)
60 1q1a_A HST2 protein; ternary c 86.9 0.46 1.6E-05 44.6 4.0 67 299-365 208-280 (289)
61 1qs0_A 2-oxoisovalerate dehydr 86.9 1 3.5E-05 44.4 6.6 99 91-194 204-307 (407)
62 2ozl_A PDHE1-A type I, pyruvat 86.3 1.9 6.6E-05 41.8 8.2 96 91-194 163-263 (365)
63 3lq1_A 2-succinyl-5-enolpyruvy 85.9 0.74 2.5E-05 47.6 5.3 111 78-194 442-560 (578)
64 1gpu_A Transketolase; transfer 85.2 2.3 8E-05 44.8 8.8 116 66-193 409-529 (680)
65 1q14_A HST2 protein; histone d 85.1 0.94 3.2E-05 43.9 5.2 66 299-364 216-287 (361)
66 3eya_A Pyruvate dehydrogenase 84.9 7.8 0.00027 39.5 12.5 157 32-194 361-529 (549)
67 2bfd_A 2-oxoisovalerate dehydr 84.6 1.5 5E-05 43.2 6.5 98 91-194 185-287 (400)
68 1j8f_A SIRT2, sirtuin 2, isofo 84.2 1.1 3.8E-05 42.7 5.3 71 295-366 213-306 (323)
69 3hww_A 2-succinyl-5-enolpyruvy 83.8 1.5 5.1E-05 45.1 6.5 123 65-193 406-538 (556)
70 1itz_A Transketolase; calvin c 83.8 5.2 0.00018 42.1 10.7 116 66-193 414-534 (675)
71 2iv2_X Formate dehydrogenase H 83.4 0.81 2.8E-05 48.6 4.4 115 221-339 80-207 (715)
72 1v5e_A Pyruvate oxidase; oxido 83.3 2.9 9.9E-05 43.2 8.5 114 77-194 418-539 (590)
73 1r9j_A Transketolase; domains, 82.7 4.9 0.00017 42.3 9.9 116 66-193 402-521 (673)
74 2pan_A Glyoxylate carboligase; 82.4 1.8 6.3E-05 44.9 6.5 119 74-194 444-580 (616)
75 3uk1_A Transketolase; structur 82.0 7.4 0.00025 41.1 11.0 115 67-193 449-566 (711)
76 3m49_A Transketolase; alpha-be 80.4 6.7 0.00023 41.3 9.9 116 67-193 428-546 (690)
77 3i9v_3 NADH-quinone oxidoreduc 79.6 2.9 9.8E-05 44.9 6.9 82 220-315 321-404 (783)
78 3u31_A SIR2A, transcriptional 78.8 0.83 2.8E-05 42.9 2.1 46 295-340 209-256 (290)
79 4feg_A Pyruvate oxidase; carba 77.4 20 0.00069 36.9 12.5 151 40-194 384-546 (603)
80 2pgn_A Cyclohexane-1,2-dione h 76.3 13 0.00043 38.3 10.5 153 32-194 379-547 (589)
81 1ozh_A ALS, acetolactate synth 75.8 3.9 0.00013 42.0 6.4 121 65-194 410-543 (566)
82 1q6z_A BFD, BFDC, benzoylforma 75.7 5.3 0.00018 40.5 7.4 155 32-193 357-524 (528)
83 3rim_A Transketolase, TK; TPP, 75.6 9.1 0.00031 40.4 9.2 158 25-193 373-553 (700)
84 2ivf_A Ethylbenzene dehydrogen 75.4 0.5 1.7E-05 52.2 -0.5 116 221-340 163-288 (976)
85 2c31_A Oxalyl-COA decarboxylas 74.9 8 0.00027 39.6 8.6 111 78-194 432-547 (568)
86 1umd_A E1-alpha, 2-OXO acid de 74.9 6.5 0.00022 38.0 7.4 98 91-194 167-269 (367)
87 1t9b_A Acetolactate synthase, 72.8 19 0.00067 37.7 11.0 109 77-194 518-637 (677)
88 2wvg_A PDC, pyruvate decarboxy 72.3 4.8 0.00016 41.3 6.1 109 77-193 418-540 (568)
89 2iht_A Carboxyethylarginine sy 71.3 13 0.00045 38.0 9.2 158 28-194 386-561 (573)
90 2vbi_A Pyruvate decarboxylase; 68.8 3.6 0.00012 42.2 4.2 109 77-193 414-532 (566)
91 1ybh_A Acetolactate synthase, 67.7 30 0.001 35.4 11.0 114 75-194 429-558 (590)
92 2uz1_A Benzaldehyde lyase; thi 66.3 20 0.00067 36.6 9.2 156 32-193 374-545 (563)
93 2hy5_A Putative sulfurtransfer 66.0 20 0.00067 28.7 7.4 89 221-311 17-130 (130)
94 2zxr_A Single-stranded DNA spe 64.1 17 0.00058 38.0 8.1 105 221-337 58-162 (666)
95 3trj_A Phosphoheptose isomeras 63.7 22 0.00076 30.8 7.8 101 28-128 34-154 (201)
96 1q16_A Respiratory nitrate red 62.2 7.7 0.00026 43.7 5.5 116 221-340 163-288 (1247)
97 2nap_A Protein (periplasmic ni 61.9 1.1 3.8E-05 47.5 -1.3 115 221-340 81-210 (723)
98 2xbl_A Phosphoheptose isomeras 61.9 36 0.0012 28.9 8.8 98 29-126 37-154 (198)
99 2x7j_A 2-succinyl-5-enolpyruvy 60.7 3 0.0001 43.2 1.7 123 65-193 445-579 (604)
100 3u5c_A 40S ribosomal protein S 59.5 13 0.00046 33.7 5.6 74 222-314 54-129 (252)
101 1tk9_A Phosphoheptose isomeras 59.4 42 0.0014 28.1 8.8 99 28-126 30-148 (188)
102 2q28_A Oxalyl-COA decarboxylas 58.9 14 0.00046 37.8 6.3 112 77-194 426-544 (564)
103 1h0h_A Formate dehydrogenase ( 58.5 1.7 5.7E-05 48.0 -0.7 115 221-339 88-225 (977)
104 1e2b_A Enzyme IIB-cellobiose; 57.9 13 0.00046 28.8 4.7 31 236-266 4-34 (106)
105 1kqf_A FDH-N alpha, formate de 57.3 3.3 0.00011 45.8 1.4 114 221-338 126-263 (1015)
106 1vi6_A 30S ribosomal protein S 55.5 30 0.001 30.4 7.0 74 221-314 52-127 (208)
107 1x92_A APC5045, phosphoheptose 55.4 42 0.0014 28.6 8.2 97 29-126 34-151 (199)
108 1ovm_A Indole-3-pyruvate decar 54.7 5.6 0.00019 40.6 2.5 107 77-193 413-531 (552)
109 2d1p_A TUSD, hypothetical UPF0 54.5 37 0.0013 27.7 7.1 87 221-309 29-140 (140)
110 2vbf_A Branched-chain alpha-ke 53.9 9.8 0.00033 38.9 4.2 108 77-193 430-550 (570)
111 2nxw_A Phenyl-3-pyruvate decar 53.6 8.2 0.00028 39.5 3.6 107 77-193 427-541 (565)
112 4au1_A Precorrin-8X methylmuta 53.0 16 0.00055 32.6 4.9 53 222-274 158-212 (229)
113 2e7z_A Acetylene hydratase AHY 53.0 3.4 0.00012 43.8 0.6 105 222-335 81-198 (727)
114 1vim_A Hypothetical protein AF 52.4 63 0.0022 27.6 8.8 46 222-269 34-79 (200)
115 1m3s_A Hypothetical protein YC 52.1 67 0.0023 26.9 8.8 46 222-269 24-69 (186)
116 2xzm_B RPS0E; ribosome, transl 52.0 39 0.0013 30.4 7.4 75 221-314 49-126 (241)
117 3bch_A 40S ribosomal protein S 51.8 54 0.0018 29.7 8.2 74 222-314 88-163 (253)
118 3fxa_A SIS domain protein; str 51.6 26 0.0009 30.0 6.2 47 222-269 31-77 (201)
119 3iz6_A 40S ribosomal protein S 51.4 66 0.0022 29.9 8.8 75 222-315 59-135 (305)
120 3jx9_A Putative phosphoheptose 51.0 69 0.0024 27.1 8.5 83 28-125 26-114 (170)
121 2m1z_A LMO0427 protein; homolo 50.8 41 0.0014 26.2 6.3 95 238-363 5-104 (106)
122 2kyr_A Fructose-like phosphotr 50.6 35 0.0012 26.8 6.0 90 243-362 15-106 (111)
123 2e6k_A Transketolase; structur 49.4 58 0.002 33.9 9.3 91 93-194 153-250 (651)
124 3sho_A Transcriptional regulat 48.4 31 0.0011 29.0 6.1 47 222-270 26-72 (187)
125 3i9v_3 NADH-quinone oxidoreduc 47.9 73 0.0025 33.9 10.0 92 223-317 488-594 (783)
126 2k53_A A3DK08 protein; NESG, C 47.6 7 0.00024 28.5 1.4 55 24-80 4-64 (76)
127 2yva_A DNAA initiator-associat 47.0 90 0.0031 26.3 8.9 99 29-127 30-148 (196)
128 3nbm_A PTS system, lactose-spe 46.5 18 0.00063 28.2 3.8 35 235-269 6-40 (108)
129 2vpz_A Thiosulfate reductase; 46.5 6.8 0.00023 41.8 1.7 103 222-335 118-237 (765)
130 1gpu_A Transketolase; transfer 46.0 66 0.0022 33.7 9.1 91 93-194 151-250 (680)
131 2r8o_A Transketolase 1, TK 1; 45.9 59 0.002 33.9 8.7 91 93-194 149-247 (669)
132 2zkq_b 40S ribosomal protein S 45.7 73 0.0025 29.5 8.3 74 222-314 55-130 (295)
133 1ma3_A SIR2-AF2, transcription 45.2 14 0.00049 33.5 3.5 27 223-249 3-29 (253)
134 1eu1_A Dimethyl sulfoxide redu 44.0 19 0.00064 38.4 4.6 117 221-339 86-226 (780)
135 1jeo_A MJ1247, hypothetical pr 43.9 1.1E+02 0.0038 25.2 8.9 47 221-269 26-72 (180)
136 3e7d_A COBH, precorrin-8X meth 42.8 33 0.0011 30.2 5.2 54 221-274 140-195 (212)
137 2ioj_A Hypothetical protein AF 42.2 27 0.00092 28.2 4.4 32 236-271 74-106 (139)
138 3ors_A N5-carboxyaminoimidazol 41.4 43 0.0015 28.2 5.4 33 22-54 11-43 (163)
139 3k35_A NAD-dependent deacetyla 40.8 34 0.0012 32.2 5.3 30 219-248 28-57 (318)
140 3ml1_A NAPA, periplasmic nitra 40.5 4.3 0.00015 43.6 -1.0 42 299-340 175-222 (802)
141 1x2l_A CUT-like 2, homeobox pr 40.3 30 0.001 26.6 4.0 36 8-43 1-36 (101)
142 3uk1_A Transketolase; structur 40.1 78 0.0027 33.3 8.5 93 93-194 190-287 (711)
143 1di0_A Lumazine synthase; tran 39.6 70 0.0024 26.7 6.6 32 31-62 30-66 (158)
144 3pki_A NAD-dependent deacetyla 39.4 36 0.0012 32.6 5.3 30 219-248 28-57 (355)
145 1r9j_A Transketolase; domains, 39.3 1.2E+02 0.0041 31.6 9.8 90 93-194 151-250 (673)
146 3m49_A Transketolase; alpha-be 39.3 1.2E+02 0.0041 31.7 9.8 91 96-194 178-273 (690)
147 3mos_A Transketolase, TK; thia 39.2 71 0.0024 33.0 8.0 91 93-193 147-241 (616)
148 1tmo_A TMAO reductase, trimeth 39.2 17 0.00059 39.0 3.4 117 221-339 119-263 (829)
149 1ti6_A Pyrogallol hydroxytrans 38.8 21 0.00073 38.6 4.1 114 221-338 114-253 (875)
150 2r4q_A Phosphotransferase syst 38.7 63 0.0022 25.0 5.7 81 248-358 18-98 (106)
151 1hqk_A 6,7-dimethyl-8-ribityll 38.3 47 0.0016 27.7 5.3 33 31-63 32-69 (154)
152 2k5e_A Uncharacterized protein 37.9 15 0.00051 26.5 1.9 41 25-67 7-53 (73)
153 2i2w_A Phosphoheptose isomeras 37.9 80 0.0027 27.2 7.2 37 91-127 133-170 (212)
154 3kom_A Transketolase; rossmann 37.9 86 0.0029 32.7 8.4 93 93-194 151-249 (663)
155 2yva_A DNAA initiator-associat 37.3 37 0.0013 28.8 4.8 46 222-268 28-78 (196)
156 1ofu_A FTSZ, cell division pro 37.0 18 0.00063 34.1 2.9 83 221-310 82-165 (320)
157 1xmp_A PURE, phosphoribosylami 36.8 55 0.0019 27.7 5.4 33 22-54 19-51 (170)
158 3kuu_A Phosphoribosylaminoimid 36.0 55 0.0019 27.8 5.3 33 22-54 20-52 (174)
159 1rvv_A Riboflavin synthase; tr 35.9 47 0.0016 27.7 4.9 32 31-62 32-68 (154)
160 3j20_B 30S ribosomal protein S 35.6 92 0.0032 27.1 6.9 74 222-314 49-123 (202)
161 3rg8_A Phosphoribosylaminoimid 35.5 22 0.00076 29.8 2.8 33 22-54 10-42 (159)
162 1u11_A PURE (N5-carboxyaminoim 35.3 57 0.0019 27.9 5.3 33 22-54 29-61 (182)
163 3sho_A Transcriptional regulat 34.9 1.4E+02 0.0048 24.7 8.1 92 29-126 28-125 (187)
164 2vxy_A FTSZ, cell division pro 34.6 21 0.00073 34.5 2.9 83 221-311 82-166 (382)
165 3dma_A Exopolyphosphatase-rela 34.3 95 0.0033 29.3 7.5 113 222-338 8-128 (343)
166 1q1a_A HST2 protein; ternary c 34.3 31 0.0011 32.0 3.9 27 222-248 5-33 (289)
167 1rq2_A Cell division protein F 34.3 19 0.00065 34.9 2.5 83 221-311 82-166 (382)
168 2xhz_A KDSD, YRBH, arabinose 5 34.2 43 0.0015 28.0 4.6 44 224-268 37-80 (183)
169 2r75_1 Cell division protein F 33.6 21 0.00072 34.0 2.7 82 221-310 78-161 (338)
170 3cpq_A 50S ribosomal protein L 33.1 98 0.0034 23.8 6.2 43 226-269 27-69 (110)
171 2obx_A DMRL synthase 1, 6,7-di 33.1 56 0.0019 27.3 4.9 28 31-58 31-62 (157)
172 4dxd_A Cell division protein F 33.1 24 0.00081 34.3 2.9 83 221-311 88-172 (396)
173 3s99_A Basic membrane lipoprot 33.0 1.6E+02 0.0055 27.8 9.0 41 31-71 76-116 (356)
174 3v7e_A Ribosome-associated pro 32.8 64 0.0022 23.5 4.8 44 226-270 17-60 (82)
175 1yc5_A NAD-dependent deacetyla 32.4 22 0.00077 32.0 2.6 24 225-248 3-26 (246)
176 2r48_A Phosphotransferase syst 32.2 69 0.0024 24.8 5.0 82 248-359 18-99 (106)
177 2yic_A 2-oxoglutarate decarbox 31.5 34 0.0012 36.9 4.2 97 91-193 278-383 (868)
178 2vk8_A Pyruvate decarboxylase 31.5 31 0.0011 35.0 3.8 90 96-193 441-541 (563)
179 3trh_A Phosphoribosylaminoimid 31.4 50 0.0017 27.9 4.3 32 22-53 14-45 (169)
180 3cvj_A Putative phosphoheptose 31.1 1.6E+02 0.0054 25.8 8.1 35 91-125 110-145 (243)
181 3czc_A RMPB; alpha/beta sandwi 30.9 49 0.0017 25.6 4.0 30 236-265 19-49 (110)
182 1itz_A Transketolase; calvin c 30.8 1.2E+02 0.0041 31.6 8.2 93 93-194 162-261 (675)
183 2o1s_A 1-deoxy-D-xylulose-5-ph 30.8 1.3E+02 0.0045 30.9 8.4 49 77-125 126-181 (621)
184 2l2q_A PTS system, cellobiose- 30.5 69 0.0024 24.6 4.8 97 237-363 6-104 (109)
185 1tvm_A PTS system, galactitol- 30.4 62 0.0021 25.1 4.6 31 236-266 22-53 (113)
186 3hp4_A GDSL-esterase; psychrot 30.1 1.1E+02 0.0037 25.0 6.5 52 220-271 87-145 (185)
187 3u31_A SIR2A, transcriptional 30.0 32 0.0011 31.9 3.3 26 223-248 33-58 (290)
188 3riy_A NAD-dependent deacetyla 30.0 29 0.00098 31.9 2.9 25 224-248 10-34 (273)
189 2lbw_A H/ACA ribonucleoprotein 29.9 1.5E+02 0.005 23.3 6.8 45 226-270 26-70 (121)
190 4b4k_A N5-carboxyaminoimidazol 29.8 1.1E+02 0.0038 26.1 6.2 35 21-55 29-63 (181)
191 3bfj_A 1,3-propanediol oxidore 29.8 58 0.002 31.3 5.2 65 235-311 33-101 (387)
192 1o4v_A Phosphoribosylaminoimid 29.7 70 0.0024 27.4 5.0 33 22-54 21-53 (183)
193 3ahc_A Phosphoketolase, xylulo 29.4 4E+02 0.014 28.5 11.9 115 67-190 492-622 (845)
194 2hjh_A NAD-dependent histone d 29.2 34 0.0012 32.7 3.4 25 224-248 35-59 (354)
195 2c42_A Pyruvate-ferredoxin oxi 29.1 92 0.0032 35.0 7.2 98 93-194 956-1070(1231)
196 1rrm_A Lactaldehyde reductase; 28.9 45 0.0015 32.1 4.2 65 235-311 31-97 (386)
197 1vjg_A Putative lipase from th 28.8 1.1E+02 0.0037 25.9 6.5 50 221-271 115-175 (218)
198 2csu_A 457AA long hypothetical 28.4 3.3E+02 0.011 26.7 10.5 163 55-270 259-434 (457)
199 3j21_Z 50S ribosomal protein L 28.3 1.4E+02 0.0049 22.3 6.2 42 226-269 21-63 (99)
200 3fxa_A SIS domain protein; str 28.1 1.8E+02 0.0061 24.5 7.7 94 30-127 34-131 (201)
201 3trj_A Phosphoheptose isomeras 27.9 65 0.0022 27.7 4.7 45 224-268 31-83 (201)
202 1b93_A Protein (methylglyoxal 27.8 93 0.0032 25.8 5.4 46 227-272 73-122 (152)
203 3l84_A Transketolase; TKT, str 27.6 1.1E+02 0.0039 31.5 7.2 94 90-194 145-242 (632)
204 2xt6_A 2-oxoglutarate decarbox 27.5 47 0.0016 37.0 4.4 97 91-193 523-628 (1113)
205 3nxk_A Cytoplasmic L-asparagin 27.5 75 0.0026 30.0 5.4 35 88-122 244-281 (334)
206 3qbe_A 3-dehydroquinate syntha 27.5 62 0.0021 31.0 4.9 40 226-267 34-73 (368)
207 4gnr_A ABC transporter substra 27.2 1.1E+02 0.0039 28.0 6.7 60 223-285 62-121 (353)
208 1m2k_A Silent information regu 27.2 38 0.0013 30.6 3.1 23 226-248 3-25 (249)
209 4grd_A N5-CAIR mutase, phospho 27.0 1.1E+02 0.0036 26.0 5.6 34 21-54 19-52 (173)
210 1x92_A APC5045, phosphoheptose 27.0 66 0.0023 27.3 4.6 45 223-268 33-82 (199)
211 1w41_A 50S ribosomal protein L 26.7 1.4E+02 0.0047 22.5 5.9 42 226-269 22-64 (101)
212 2xhz_A KDSD, YRBH, arabinose 5 26.6 2.6E+02 0.0089 22.9 8.4 93 30-126 38-134 (183)
213 3hh1_A Tetrapyrrole methylase 26.6 1.2E+02 0.0042 23.3 5.8 47 222-268 66-113 (117)
214 1c2y_A Protein (lumazine synth 26.1 65 0.0022 26.9 4.1 32 31-62 33-68 (156)
215 2ywx_A Phosphoribosylaminoimid 26.0 1.3E+02 0.0044 25.1 5.8 39 22-60 7-46 (157)
216 2xzm_U Ribosomal protein L7AE 26.0 1.4E+02 0.0049 23.7 6.1 45 226-270 30-74 (126)
217 1vim_A Hypothetical protein AF 25.7 1.6E+02 0.0056 24.9 7.0 88 30-127 37-128 (200)
218 1hi9_A Dciaa, dipeptide transp 25.6 79 0.0027 29.0 4.9 143 30-182 39-204 (274)
219 3oow_A Phosphoribosylaminoimid 25.4 79 0.0027 26.6 4.5 77 22-123 13-91 (166)
220 2vaw_A FTSZ, cell division pro 25.4 26 0.0009 34.1 1.8 83 221-310 82-165 (394)
221 1w5f_A Cell division protein F 25.3 33 0.0011 32.8 2.4 83 221-310 92-175 (353)
222 3ox4_A Alcohol dehydrogenase 2 25.0 36 0.0012 32.8 2.7 76 224-311 18-97 (383)
223 1vkm_A Conserved hypothetical 24.9 1.1E+02 0.0038 28.2 5.7 42 229-270 141-182 (297)
224 3rot_A ABC sugar transporter, 24.9 3.6E+02 0.012 23.8 11.7 150 24-196 110-279 (297)
225 1ivn_A Thioesterase I; hydrola 24.8 1.5E+02 0.005 24.4 6.4 49 221-269 84-139 (190)
226 2afr_A Cobalamin biosynthesis 24.5 1.2E+02 0.0042 26.9 5.8 53 222-274 143-201 (231)
227 4hbz_A Putative phosphohistidi 24.4 1.1E+02 0.0037 26.0 5.4 86 27-112 46-135 (186)
228 3hbf_A Flavonoid 3-O-glucosylt 24.3 3.4E+02 0.012 26.5 9.8 27 90-122 346-372 (454)
229 2bdq_A Copper homeostasis prot 24.2 86 0.003 27.8 4.8 41 224-268 164-205 (224)
230 3td9_A Branched chain amino ac 24.2 1.4E+02 0.0048 27.5 6.8 60 224-286 69-128 (366)
231 2xw6_A MGS, methylglyoxal synt 24.1 75 0.0026 25.8 4.0 46 227-272 65-114 (134)
232 3otg_A CALG1; calicheamicin, T 24.1 88 0.003 29.5 5.4 76 29-121 259-334 (412)
233 2o1x_A 1-deoxy-D-xylulose-5-ph 24.1 1.8E+02 0.0063 29.8 8.1 31 95-125 150-183 (629)
234 3kkq_A RAS-related protein M-R 23.5 1.1E+02 0.0039 24.7 5.4 48 223-270 110-161 (183)
235 3glr_A NAD-dependent deacetyla 23.4 53 0.0018 30.4 3.4 25 224-248 10-36 (285)
236 1m3s_A Hypothetical protein YC 23.2 2E+02 0.007 23.7 7.0 89 30-127 27-118 (186)
237 1vmd_A MGS, methylglyoxal synt 23.1 1.1E+02 0.0037 26.1 5.0 46 227-272 89-138 (178)
238 1q14_A HST2 protein; histone d 23.1 58 0.002 31.2 3.7 29 221-249 12-42 (361)
239 3etn_A Putative phosphosugar i 23.0 1E+02 0.0036 26.7 5.2 45 223-269 42-91 (220)
240 3lp6_A Phosphoribosylaminoimid 22.4 91 0.0031 26.4 4.3 33 22-54 15-47 (174)
241 3nbm_A PTS system, lactose-spe 22.1 51 0.0018 25.6 2.6 30 239-270 56-85 (108)
242 3h6g_A Glutamate receptor, ion 22.0 1.8E+02 0.0062 27.2 7.2 58 225-286 61-118 (395)
243 1iv0_A Hypothetical protein; r 22.0 1.3E+02 0.0046 22.7 4.9 47 221-268 36-90 (98)
244 1kz1_A 6,7-dimethyl-8-ribityll 22.0 1.2E+02 0.0039 25.4 4.8 27 32-58 38-69 (159)
245 4ex8_A ALNA; alpha/beta/alpha- 21.9 95 0.0032 28.9 4.6 48 223-270 145-192 (316)
246 3etn_A Putative phosphosugar i 21.5 2.3E+02 0.0079 24.4 7.2 94 29-126 43-146 (220)
247 4f06_A Extracellular ligand-bi 21.4 88 0.003 29.3 4.7 60 224-286 60-119 (371)
248 2qtc_A Pyruvate dehydrogenase 21.4 5.1E+02 0.017 27.9 11.0 174 67-265 563-752 (886)
249 4iao_A NAD-dependent histone d 21.3 60 0.002 32.4 3.4 25 224-248 173-197 (492)
250 3v7q_A Probable ribosomal prot 21.2 2.1E+02 0.0071 21.5 5.9 44 226-270 25-68 (101)
251 4fyk_A Deoxyribonucleoside 5'- 21.2 2.1E+02 0.0073 23.5 6.4 26 21-48 12-37 (152)
252 3rim_A Transketolase, TK; TPP, 20.8 2.1E+02 0.0072 29.9 7.7 96 91-194 169-269 (700)
253 3on1_A BH2414 protein; structu 20.8 2.3E+02 0.0079 21.2 6.2 44 226-270 24-67 (101)
254 3ff4_A Uncharacterized protein 20.8 96 0.0033 24.5 4.0 38 32-70 73-110 (122)
255 1jeo_A MJ1247, hypothetical pr 20.7 2.3E+02 0.0079 23.2 6.8 89 30-127 30-121 (180)
256 1vlj_A NADH-dependent butanol 20.7 1E+02 0.0035 29.7 5.1 33 235-267 43-76 (407)
257 2q0q_A ARYL esterase; SGNH hyd 20.5 2.4E+02 0.0082 23.4 7.0 65 221-285 107-200 (216)
258 4gim_A Pseudouridine-5'-phosph 20.3 70 0.0024 30.0 3.4 49 222-270 164-212 (335)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=1.5e-71 Score=585.56 Aligned_cols=401 Identities=40% Similarity=0.696 Sum_probs=338.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~ 105 (431)
+|+++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||+|+||++||++|+|||++|++
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 81 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAF 81 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHH
Confidence 47899999999999999999999999999999999876689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 185 (431)
+||++|+.+++|||+|+|++++..++++..+||.++.+++.||..+|+++|||++++++++++++.+++|++.|.+++||
T Consensus 82 ~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GP 161 (568)
T 2wvg_A 82 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKP 161 (568)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999888887778877666777999999999999999999999999999999999998899
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 186 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
|||+||.|++..+ .......+...........+.++.+++++++|+++|||+|++|.|+.++++.+++++|||++++|
T Consensus 162 V~l~iP~dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 239 (568)
T 2wvg_A 162 VYLEIACNIASMP--CAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGA 239 (568)
T ss_dssp EEEEEEGGGTTSE--ECEECCTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCE
T ss_pred EEEEechhHhcCc--ccCCCcccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCC
Confidence 9999999997632 21100111101111112234567899999999999999999999999888999999999999999
Q ss_pred eEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCc
Q 014091 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (431)
Q Consensus 266 v~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~ 345 (431)
|++|++|||.||++||+++|+|.|..++..++++++++|+||++|+++.++.+..|..+.++.++||||.|+.+++ .+.
T Consensus 240 v~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (568)
T 2wvg_A 240 VATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GIR 318 (568)
T ss_dssp EEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TEE
T ss_pred EEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-Cee
Confidence 9999999999999999999998788888899999999999999999999888877876667789999999999997 566
Q ss_pred cccccHHHHHHHHHHHhccccchhhhhhhccC-CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYV-PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 346 ~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
+.+++++++|++|.+.+......|..|.+... ............++++..+++.|++.+++++++++|+|++.++..++
T Consensus 319 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 398 (568)
T 2wvg_A 319 FPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRM 398 (568)
T ss_dssp EESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhc
Confidence 66778999999999887643222333433211 11111111123569999999999999999999999999997666677
Q ss_pred ccCCC
Q 014091 425 RLPEN 429 (431)
Q Consensus 425 ~~p~g 429 (431)
+++++
T Consensus 399 ~~~~~ 403 (568)
T 2wvg_A 399 KLPNG 403 (568)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 66643
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=6.5e-71 Score=580.41 Aligned_cols=397 Identities=42% Similarity=0.705 Sum_probs=337.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~ 105 (431)
+|+++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+||++||++|+|||++|++
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 81 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAM 81 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Confidence 47899999999999999999999999999999999876689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 185 (431)
+||++|+.+++|||+|+|++++..++++..+||.++.+++.||..+|+++|||++++++++++++.+++|++.|.+++||
T Consensus 82 ~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GP 161 (566)
T 2vbi_A 82 NALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKP 161 (566)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999888887778877666777999999999999999999999999999999999998899
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 186 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
|||+||.|++..+.+.... .+...........+.++.+++++++|+++|||+|++|.|+.++++.+++++|||++++|
T Consensus 162 V~l~iP~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 239 (566)
T 2vbi_A 162 AYLDIACNIASEPCVRPGP--VSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCA 239 (566)
T ss_dssp EEEEEETTTTTSBCCEECC--CSCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCE
T ss_pred EEEEechhhcCCeecCCCC--CcccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCC
Confidence 9999999997642111011 11111111112234567899999999999999999999999889999999999999999
Q ss_pred eEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCc
Q 014091 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (431)
Q Consensus 266 v~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~ 345 (431)
|++|++|||.||++||+++|+|.|..++..++++++++|+||++|+++.++.+..|..+.++.++||||.|+.+++ .+.
T Consensus 240 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (566)
T 2vbi_A 240 VTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GRA 318 (566)
T ss_dssp EEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TEE
T ss_pred EEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-Ccc
Confidence 9999999999999999999998788888899999999999999999999988888876667889999999999997 556
Q ss_pred cccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhccccc
Q 014091 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425 (431)
Q Consensus 346 ~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~~ 425 (431)
..+++++++|++|.+.+......|..|.+.... .... ....++++..+++.|++.+++|+++++|+|++.+....++
T Consensus 319 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~ 395 (566)
T 2vbi_A 319 YDGFTLRAFLQALAEKAPARPASAQKSSVPTCS--LTAT-SDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMT 395 (566)
T ss_dssp EESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCC--CCCC-CTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCC
T ss_pred cCCccHHHHHHHHHHhccccccchhhhhhhhhc--cCCC-CCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheE
Confidence 667789999999998876432222334322111 1111 2335699999999999999999999999999876566666
Q ss_pred cCC
Q 014091 426 LPE 428 (431)
Q Consensus 426 ~p~ 428 (431)
+++
T Consensus 396 ~~~ 398 (566)
T 2vbi_A 396 LPR 398 (566)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=2e-71 Score=584.10 Aligned_cols=402 Identities=30% Similarity=0.466 Sum_probs=336.4
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~ 104 (431)
++|+++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+||++||++|+|||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHH
Confidence 35899999999999999999999999999999999987668999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++|+.+++|||+|+|++++..++++..+||.++...+.++.++|+++|||+.++++++++++.|++|++.|.+++|
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 161 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQR 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999887777788988876555688999999999999999999999999999999998889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+... .+.+.........+.+.++.+++++++|++||||+|++|.|+.++++.+++++|||++++
T Consensus 162 PV~l~iP~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~ 240 (563)
T 2vk8_A 162 PVYLGLPANLVDLNVPAKL-LQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQF 240 (563)
T ss_dssp CEEEEEETTGGGSEEEGGG-GGSCCCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCC
T ss_pred CEEEEechhhhcCccCCcc-CcCcccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCC
Confidence 9999999999753211100 000111111111223456689999999999999999999999888899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||++|++|||.||++||+++|+|.|..++..+++++++||+||+||++++++.+..|..+.++.++||||.|+.+++ ..
T Consensus 241 Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 319 (563)
T 2vk8_A 241 PAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR-NA 319 (563)
T ss_dssp CEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-TE
T ss_pred CEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-Cc
Confidence 99999999999999999999997788889999999999999999999999988877776666789999999999997 55
Q ss_pred ccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 345 ~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
...+++++.+|++|.+.+......|..+.+.. ............++++..+++.|++.+++++++++|+|++.++..++
T Consensus 320 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 398 (563)
T 2vk8_A 320 TFPGVQMKFVLQKLLTTIADAAKGYKPVAVPA-RTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQT 398 (563)
T ss_dssp EEETCCHHHHHHHHHHHHHHHTTTCCCCCCCC-CCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGS
T ss_pred ccCCcCHHHHHHHHHHhhccccchhhhhhhhh-hcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhc
Confidence 66677899999999887754321111111110 00000011123569999999999999999999999999998777777
Q ss_pred ccCCC
Q 014091 425 RLPEN 429 (431)
Q Consensus 425 ~~p~g 429 (431)
.++++
T Consensus 399 ~~~~~ 403 (563)
T 2vk8_A 399 TFPNN 403 (563)
T ss_dssp CCCSS
T ss_pred CcCCC
Confidence 77654
No 4
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=2.5e-69 Score=567.00 Aligned_cols=394 Identities=31% Similarity=0.476 Sum_probs=331.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~ 105 (431)
.++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||+|+||++||++|+|||++|++
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N~~ 83 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAM 83 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHTH
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHHHH
Confidence 48999999999999999999999999999999999876689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 185 (431)
+||++|+.+++|||+|+|++++..++++..+||.++..++.+|.++|+++|||++++++ +++++.+++|++.|.+++||
T Consensus 84 ~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~GP 162 (552)
T 1ovm_A 84 NGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRERRP 162 (552)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998877777788888755555789999999999999999 99999999999999987899
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 186 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
|||+||.|++..+ .... +.+.........+.+.++.+++++++|+++|||+|++|.|+.++++.+++++|+|++++|
T Consensus 163 V~l~iP~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 239 (552)
T 1ovm_A 163 GYLMLPADVAKKA--ATPP-VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMA 239 (552)
T ss_dssp EEEEEEHHHHHSB--CCCC-SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCE
T ss_pred EEEEeehhhccCc--cCCC-cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCC
Confidence 9999999986532 1111 111111111112334567899999999999999999999999888999999999999999
Q ss_pred eEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCc
Q 014091 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (431)
Q Consensus 266 v~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~ 345 (431)
|++|++|||.||++||+++|+|.|..++..+++++++||+||++|++++++.+..|..+.++.++||||+|+.+++ ...
T Consensus 240 v~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (552)
T 1ovm_A 240 HATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG-DVW 318 (552)
T ss_dssp EEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-TEE
T ss_pred EEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-Ccc
Confidence 9999999999999999999987788889999999999999999999999988888876667789999999999997 555
Q ss_pred cccccHHHHHHHHHHHhccccc-hhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhcccc
Q 014091 346 LGWVFMADFLSALAKKLRKNTT-ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (431)
Q Consensus 346 ~~~~d~~~~L~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~ 424 (431)
..+++++.+|++|.+ +..... |...|++.. .. . ......++++..+++.|++.+++++++++|+|++.++..++
T Consensus 319 ~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~ 393 (552)
T 1ovm_A 319 FTGIPMNQAIETLVE-LCKQHVHAGLMSSSSG-AI--P-FPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDL 393 (552)
T ss_dssp EESCCHHHHHHHHHH-HHHTSCCC------------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTC
T ss_pred cCCccHHHHHHHHHh-Ccccccchhhhhhhcc-cc--c-cCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHHhc
Confidence 667788999999988 654322 111222110 00 0 11133569999999999999999999999999998777777
Q ss_pred ccCCC
Q 014091 425 RLPEN 429 (431)
Q Consensus 425 ~~p~g 429 (431)
+++++
T Consensus 394 ~~~~~ 398 (552)
T 1ovm_A 394 RLPAD 398 (552)
T ss_dssp CCCSS
T ss_pred ccCCC
Confidence 76654
No 5
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=4.9e-69 Score=569.54 Aligned_cols=389 Identities=18% Similarity=0.226 Sum_probs=316.3
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcch
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGG 101 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~ 101 (431)
.+.|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 3568999999999999999999999999999999999875 57999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 181 (431)
+|+++||++|+.+++|||+|+|++++...+++ .+ |..||..+|+++|||++++.+++++++.+++|++.|.+
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 159 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMD-----TF---QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA 159 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSC-----CT---TCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCC-----cc---ccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877765 22 23578999999999999999999999999999999998
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 182 ESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 182 ~~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
.+|||||+||.|++..+.+... .+.+...........+.++.+++++++|++||||+|++|.|+ .++.+++++|+|+
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~ 236 (603)
T 4feg_A 160 HQGVAVVQIPVDLPWQQIPAED-WYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKT 236 (603)
T ss_dssp HTSEEEEEEETTGGGSEEETTT-CCCCGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHH
T ss_pred CCCCEEEEeChhhhhccCCccc-ccccccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHH
Confidence 8899999999999774321110 010111111111123356789999999999999999999999 4688999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCccccccc-ccCCCCcceEEEccCceee
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~I~Id~d~~~~ 340 (431)
+++||++|++|||.||++||+++|++ |..++..+++++++||+||+||+++++. .| ..+.++.++||||+|+.++
T Consensus 237 ~~~PV~~t~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~ 312 (603)
T 4feg_A 237 LKIPLMSTYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKL 312 (603)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCCCC-SSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGT
T ss_pred HCCCEEEcCccccCCCCCChhhcccC-cccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHh
Confidence 99999999999999999999999996 8889999999999999999999999742 23 2344578999999999999
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccccc--hhhhhhhc---cCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 014091 341 GNGPSLGW----VFMADFLSALAKKLRKNTT--ALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (431)
Q Consensus 341 ~~~~~~~~----~d~~~~L~~L~~~l~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv 411 (431)
+ .++..+ .|++.+|++|.+.+..... |+..|.+. +.............++++..+++.|++.++++++++
T Consensus 313 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv 391 (603)
T 4feg_A 313 G-KRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYS 391 (603)
T ss_dssp T-SSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEE
T ss_pred C-CccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEE
Confidence 7 444433 3899999999998764321 22222110 000000001123457999999999999999999999
Q ss_pred ecCChhhhhcc-ccccCC
Q 014091 412 AETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 412 ~D~G~~~~~~~-~~~~p~ 428 (431)
.|+|++.+|.. ++.++.
T Consensus 392 ~d~G~~~~~~~~~~~~~~ 409 (603)
T 4feg_A 392 IDVGDINLNANRHLKLTP 409 (603)
T ss_dssp ECSSHHHHHHHHHCCCCT
T ss_pred ECCchHHHHHHHhceeCC
Confidence 99999987754 455543
No 6
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=4e-68 Score=559.65 Aligned_cols=392 Identities=29% Similarity=0.462 Sum_probs=331.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~ 105 (431)
.++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||+|+||++||++|+|||++|++
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~N~~ 103 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELSAI 103 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHHHHH
Confidence 47999999999999999999999999999999999876689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCc
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 185 (431)
+||++|+.+++|||+|+|++++..++++..+||..++.++.+|..+++++|||++++++ +++++.+++|++.|.+++||
T Consensus 104 ~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~GP 182 (570)
T 2vbf_A 104 NGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKP 182 (570)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999998877777777777766676799999999999999999 99999999999999988899
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 186 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
|||+||.|++..+ .... ..+.........+.. ++.+++++++|+++|||+|++|.|+.++++.+++++|+|++++|
T Consensus 183 V~l~iP~d~~~~~--~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 258 (570)
T 2vbf_A 183 VYINLPVDVAAAK--AEKP-ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLP 258 (570)
T ss_dssp EEEEEEHHHHTSB--CCCC-SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCC
T ss_pred EEEEcchhhhcCc--ccCC-cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHCCC
Confidence 9999999996532 2111 111101111111222 57899999999999999999999999888999999999999999
Q ss_pred eEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCCc
Q 014091 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (431)
Q Consensus 266 v~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~ 345 (431)
|++|++|||.||++||+++|.|.|..++..++++++++|+||+||+++.+..+..|..+.++.++||||.|+.+++ ...
T Consensus 259 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 337 (570)
T 2vbf_A 259 ITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF-NKV 337 (570)
T ss_dssp EEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-TEE
T ss_pred EEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-Cee
Confidence 9999999999999999999998788899999999999999999999999888877776666789999999999998 566
Q ss_pred cccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChhhhhccccc
Q 014091 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425 (431)
Q Consensus 346 ~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~~~~~~~~~ 425 (431)
+.++|++.+|++|.+.+.... | .|.... . .........++++..+++.|++.+++|+++++|+|++.++..++.
T Consensus 338 ~~~~~~~~~l~~L~~~l~~~~-~--~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~ 411 (570)
T 2vbf_A 338 VEDFDFRAVVSSLSELKGIEY-E--GQYIDK-Q--YEEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIF 411 (570)
T ss_dssp ECSSCHHHHHHTGGGCCSCCC-C--SCCCCC-C--CCCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTTSC
T ss_pred ecCCCHHHHHHHHHHhccccc-c--ccchhh-h--ccccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHhcc
Confidence 677899999999987665432 1 121110 1 011112234699999999999999999999999999977666767
Q ss_pred cCCC
Q 014091 426 LPEN 429 (431)
Q Consensus 426 ~p~g 429 (431)
++.+
T Consensus 412 ~~~~ 415 (570)
T 2vbf_A 412 LKSN 415 (570)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 6654
No 7
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=1.6e-67 Score=554.16 Aligned_cols=387 Identities=26% Similarity=0.374 Sum_probs=318.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.|+++++|++.|+++||++|||+||+.+++|+++|.+++.+++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 4899999999999999999999999999999999986555789999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++|+.+++|||+|+|++++...+++..+||..+ +..||..+|++++||++++++++++++.+++|++.|.+++|
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q--~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 177 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSR 177 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC---------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc--chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998888777776654 22248999999999999999999999999999999998889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++.. +.......+ .....+...++.+++++++|+++|||+|++|.|+.++++.+++++|||++++
T Consensus 178 PV~l~iP~Dv~~~--~~~~~~~~~----~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~ 251 (565)
T 2nxw_A 178 PVYLEIPRNMVNA--EVEPVGDDP----AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGV 251 (565)
T ss_dssp CEEEEEEGGGTTC--BCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCS
T ss_pred CEEEECChhhhcC--cCCCccccC----CCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCC
Confidence 9999999999764 221111111 1111223445789999999999999999999999888899999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||++|++|||.||++||+++|.|.|..++..+++++++||+||++|+++.+..+..|...++..++||||.|+.+++ .+
T Consensus 252 Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~-~~ 330 (565)
T 2nxw_A 252 PVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLG-YH 330 (565)
T ss_dssp CEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEET-TE
T ss_pred CEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeC-Cc
Confidence 99999999999999999999987788899999999999999999999999888766655445578999999999997 55
Q ss_pred ccccccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--CCEE-EecCChhhhhc
Q 014091 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--DTAV-IAETGDSWFNC 421 (431)
Q Consensus 345 ~~~~~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~--~~iv-v~D~G~~~~~~ 421 (431)
...++.+.++|++|.+.++.... .|.................++++..+++.|++.+|+ ++++ ++|.|++.+|+
T Consensus 331 ~~~~~~~~~~l~~L~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~~ 407 (565)
T 2nxw_A 331 TYADIPLAGLVDALLERLPPSDR---TTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTA 407 (565)
T ss_dssp EEESCCHHHHHHHHHHTSCCCCC---CCCCSCSSCCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHH
T ss_pred ccCCccHHHHHHHHHHhccccch---hhhhhhhhhccccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchHHHHHH
Confidence 55667788999999887654322 121111000000001123469999999999999999 9998 99999997665
Q ss_pred ccc
Q 014091 422 QKL 424 (431)
Q Consensus 422 ~~~ 424 (431)
..+
T Consensus 408 ~~~ 410 (565)
T 2nxw_A 408 MDM 410 (565)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
No 8
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=2.9e-68 Score=558.13 Aligned_cols=382 Identities=19% Similarity=0.207 Sum_probs=312.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.+|++|+|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 5799999999999999999999999999999999987668999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 184 (431)
++||++|+.+++|||+|+|++++...+++ .+ |..||.++|+++|||++++.+++++++.+++|++.|.+++|
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YF---QETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRG 153 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSC-----CT---TCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCC-----CC---CccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999877665 22 33589999999999999999999999999999999999889
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+.+.... ..+. ........+.++.+++++++|++||||+|++|.|+. ++.+++++|+|++++
T Consensus 154 PV~l~iP~dv~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~ 228 (549)
T 3eya_A 154 VSVVVLPGDVALKPAPEGAT-MHWY--HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKA 228 (549)
T ss_dssp EEEEEEEHHHHTSBCCTTCC-CCCC--CCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTC
T ss_pred CEEEEeChhHhhcccCcccc-cccc--ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCC
Confidence 99999999997743221110 0001 111111123467899999999999999999999984 588999999999999
Q ss_pred CeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCCC
Q 014091 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~ 344 (431)
||++|++|||+||++||+++|++ |..++..+++++++||+||.+|+++++.. .+.++.++||||.|+.+++ .+
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~~~-~~ 301 (549)
T 3eya_A 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGFHTMMNADTLVLLGTQFPYRA-----FYPTDAKIIQIDINPASIG-AH 301 (549)
T ss_dssp CEEECGGGHHHHSSSCTTBCCCC-STTSCHHHHHHHHHCSEEEEESCCCCCGG-----GSCSSSEEEEEESCGGGTT-SS
T ss_pred CEEECCccCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccc-----cCCCCCeEEEEeCCHHHhC-CC
Confidence 99999999999999999999996 88899999999999999999999986321 1234678999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhccccc--hhhhhhhcc---CCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 014091 345 SLGW----VFMADFLSALAKKLRKNTT--ALENYRRIY---VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (431)
Q Consensus 345 ~~~~----~d~~~~L~~L~~~l~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G 415 (431)
+..+ .|++.+|++|.+.+..... |...|.+.. ...........+.++++..+++.|++.++++++++.|+|
T Consensus 302 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 381 (549)
T 3eya_A 302 SKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVG 381 (549)
T ss_dssp SCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTT
T ss_pred CCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCc
Confidence 3332 3899999999888764321 222222110 000000011123579999999999999999999999999
Q ss_pred hhhhhcc-ccccC
Q 014091 416 DSWFNCQ-KLRLP 427 (431)
Q Consensus 416 ~~~~~~~-~~~~p 427 (431)
++.+|.. ++.++
T Consensus 382 ~~~~~~~~~~~~~ 394 (549)
T 3eya_A 382 TPTVWAARYLKMN 394 (549)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHHhCccC
Confidence 9988854 44443
No 9
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=8.8e-68 Score=558.99 Aligned_cols=390 Identities=17% Similarity=0.230 Sum_probs=316.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
..|+++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 34899999999999999999999999999999999987668999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++...+++ .+ |..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~-----~~---Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~ 161 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTD-----AF---QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGR 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCC-----cc---cccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999877765 22 345899999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
||||||+||.|++..+.+...+...... ..+.. ...+.++.+++++++|++||||+|++|.|+.+++ +++++|||+
T Consensus 162 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~ 238 (590)
T 1ybh_A 162 PGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRM-PKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVEL 238 (590)
T ss_dssp CCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHHS-CCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHH
T ss_pred CceEEEEeCcchhhhhcccccccccccccCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHH
Confidence 5999999999996532111101000000 00000 0011356799999999999999999999998765 999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
+++||++|++|||+||++||+++|++ |..++..+++++++||+||.||+++++..+..+..+.++.++||||+|+.+++
T Consensus 239 ~~~Pv~~t~~g~g~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 317 (590)
T 1ybh_A 239 TGIPVASTLMGLGSYPADDELSLHML-GMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 317 (590)
T ss_dssp HCCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT
T ss_pred hCCCEEEchhhcCcCCCCCchhcCCc-ccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999995 88889999999999999999999998777766666667789999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcccc--------chhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNT--------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~i 409 (431)
.+...+ .|++.+|++|.+.+.... .|+....+........ ......++++..+++.|++.+|++++
T Consensus 318 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~lp~~~i 395 (590)
T 1ybh_A 318 -KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLS-FKTFGEAIPPQYAIKVLDELTDGKAI 395 (590)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCC-CCCCTTBCCHHHHHHHHHHHTTTCCE
T ss_pred -CCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhh-cccccCCcCHHHHHHHHHHhCCCCCE
Confidence 443333 389999999988775421 1221111111000000 01123469999999999999999999
Q ss_pred EEecCChhhhhcc-ccccCC
Q 014091 410 VIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 410 vv~D~G~~~~~~~-~~~~p~ 428 (431)
+++|+|++..|.. .+.++.
T Consensus 396 vv~d~G~~~~~~~~~~~~~~ 415 (590)
T 1ybh_A 396 ISTGVGQHQMWAAQFYNYKK 415 (590)
T ss_dssp EEECSSHHHHHHHHSCCCSS
T ss_pred EEEcCcHHHHHHHHhcccCC
Confidence 9999999987653 444443
No 10
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=4.2e-67 Score=559.25 Aligned_cols=393 Identities=18% Similarity=0.237 Sum_probs=316.9
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH
Q 014091 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (431)
...++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+|| +|||++|+|||++
T Consensus 79 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 79 FVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGAT 158 (677)
T ss_dssp TTTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 345899999999999999999999999999999999987678999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
|+++||++|+.+++|||+|+|++++..++++ .+ |..||..+++++|||++++.+++++++.|++||+.|.++
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~g~~-----a~---Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~g 230 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAIGTD-----AF---QEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSG 230 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTTTSC-----CT---TCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhcCCC-----Cc---cccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999987765 22 345899999999999999999999999999999999987
Q ss_pred -CCcEEEEEccCCCCCCCCCCCCC--CCCcc---CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchh-chHHHH
Q 014091 183 -SKPVYISISCNLPGIPHPTFARD--PVPFF---LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAF 255 (431)
Q Consensus 183 -~GPv~l~iP~dv~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~-~a~~~l 255 (431)
+|||||+||.|++..+....... ..+.. .+.........++.+++++++|++||||+|++|.|+.++ ++.+++
T Consensus 231 rpGPV~l~lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l 310 (677)
T 1t9b_A 231 RPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLL 310 (677)
T ss_dssp SCCEEEEEEEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHH
T ss_pred CCceEEEEcCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHH
Confidence 69999999999965321110000 00000 000000011245689999999999999999999999765 477999
Q ss_pred HHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcc------
Q 014091 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK------ 329 (431)
Q Consensus 256 ~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~------ 329 (431)
++|||++++||++|++|||+||++||+++|++ |..++..+++++++||+||.||++++++.+..+..+.++.+
T Consensus 311 ~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~-G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~ 389 (677)
T 1t9b_A 311 KELSDRAQIPVTTTLQGLGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEG 389 (677)
T ss_dssp HHHHHHTTCCEEECGGGTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTT
T ss_pred HHHHHHhCCCeeeccccCccCCCCCccccCcC-CccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccC
Confidence 99999999999999999999999999999984 88899899999999999999999999888777766665566
Q ss_pred ---eEEEccCceeecCCCcccc----ccHHHHHHHHHHHhcc-c--cchhhh---hhhccCCCCCCCCCCCCCCcCHHHH
Q 014091 330 ---AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRK-N--TTALEN---YRRIYVPPGIPVKRAQNEPLRVNVL 396 (431)
Q Consensus 330 ---~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~-~--~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (431)
+||||+|+.+++ ..+..+ .|++.+|++|++.+.. . ..|... |++.+. .... ......++++..+
T Consensus 390 ~~~iI~idid~~~~~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~v 466 (677)
T 1t9b_A 390 RGGIIHFEVSPKNIN-KVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYP-YAYM-EETPGSKIKPQTV 466 (677)
T ss_dssp SCEEEEEESCGGGSS-SSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHSC-CCCC-CCCTTCCBCHHHH
T ss_pred CceEEEEECCHHHhC-CcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhcc-cccc-cccCCCCcCHHHH
Confidence 999999999887 433332 3899999999988754 1 112222 222211 1111 1112356999999
Q ss_pred HHHHHhhC---CCCCEEEecCChhhhhcc-ccccCC
Q 014091 397 FKHIQDML---SGDTAVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 397 ~~~L~~~l---~~~~ivv~D~G~~~~~~~-~~~~p~ 428 (431)
++.|++.+ +++.+++.|+|++.+|.. ++.++.
T Consensus 467 ~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~ 502 (677)
T 1t9b_A 467 IKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRN 502 (677)
T ss_dssp HHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCS
T ss_pred HHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccCC
Confidence 99999999 678899999999987754 444443
No 11
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=1.6e-66 Score=549.07 Aligned_cols=388 Identities=18% Similarity=0.218 Sum_probs=316.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
.|+++++|++.|+++||++|||+||+.+++|+++|.++ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N 82 (589)
T 2pgn_A 3 IKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLL 82 (589)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGG
T ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHH
Confidence 47999999999999999999999999999999999876 67999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCC
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 183 (431)
+++||++|+.+++|||+|+|++++..++++. . +|..||.. |+++|||++++.+++++++.+++|++.|.+++
T Consensus 83 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~------~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (589)
T 2pgn_A 83 LHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-A------AQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHP 154 (589)
T ss_dssp CHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-C------SSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCCCC-c------ccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998776641 1 12347888 99999999999999999999999999999875
Q ss_pred -CcEEEEEccCCCCCCCCCCCCCCCCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 184 -KPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 184 -GPv~l~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
|||||+||.|++..+.+.....+.+. ..+.... .+. +.+++++++|+++|||+|++|.++.++++.+++++|||+
T Consensus 155 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 231 (589)
T 2pgn_A 155 AGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLH--APN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEM 231 (589)
T ss_dssp CCEEEEEEETHHHHCEEECTTTSCCCCCCCCCCCC--CCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CccEEEEeCHhhhhcccccccccccccccCCccCC--ChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHH
Confidence 99999999998653211110001111 1111001 123 679999999999999999999999888899999999999
Q ss_pred hCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
+++||++|++|||.||++||+++|. .|..++..+++++++||+||.||+++.++.+. |..+.++.++||||.|+.+++
T Consensus 232 ~~~Pv~~t~~~~g~~~~~~p~~~G~-~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~ 309 (589)
T 2pgn_A 232 VGVPVVTTSTGAGVFPETHALAMGS-AGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLG 309 (589)
T ss_dssp HTCCEEECTTTTTSSCTTSTTEEEE-CSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTT
T ss_pred hCCCEEEccccCccCCCCChhhcCC-ccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHC
Confidence 9999999999999999999999999 58888888999999999999999999888877 776667789999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcc----c-------cchh--hhhhh-ccCCCCCCCCCCCCCCcCHHHHHHHHHhh
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRK----N-------TTAL--ENYRR-IYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~----~-------~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 403 (431)
..+..+ .|++++|++|.+.+.. . ..|. ..+.+ ... ...........++++..+++.|++.
T Consensus 310 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~ 387 (589)
T 2pgn_A 310 -TFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRKV 387 (589)
T ss_dssp -SSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHHT
T ss_pred -CCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHHh
Confidence 443333 3899999999987752 1 1122 22222 110 0000010123469999999999999
Q ss_pred CCCCCEEEecCChhhhhcc-ccccCC
Q 014091 404 LSGDTAVIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 404 l~~~~ivv~D~G~~~~~~~-~~~~p~ 428 (431)
++++++++.|+|++..|.. .+.+++
T Consensus 388 l~~~~iv~~d~g~~~~~~~~~~~~~~ 413 (589)
T 2pgn_A 388 QRPEDIIVTDIGNHTLPMFGGAILQR 413 (589)
T ss_dssp CCTTCEEEECSSTTHHHHHHHCCCSS
T ss_pred CCCCCEEEEcCchHHHHHHHhcccCC
Confidence 9999999999999976643 444443
No 12
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=4.7e-66 Score=543.08 Aligned_cols=378 Identities=17% Similarity=0.197 Sum_probs=306.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHH
Q 014091 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVL 105 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~ 105 (431)
|+++++|++.|+++||++|||+||+.+++|+++|.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 89 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 89 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHH
Confidence 789999999999999999999999999999999987 58999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CC
Q 014091 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~G 184 (431)
+||++|+.+++|||+|+|++++...+++. + |..||..+|+++|||++++++++++++.+++|++.|.++ ||
T Consensus 90 ~~l~~A~~~~vPll~itg~~~~~~~~~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~G 161 (566)
T 1ozh_A 90 TGMATANSEGDPVVALGGAVKRADKAKQV-----H---QSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161 (566)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC--------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhcCCCEEEEeCCCccccCCCCc-----c---cccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998776541 2 335899999999999999999999999999999999987 59
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCC
Q 014091 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (431)
Q Consensus 185 Pv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~ 264 (431)
||||+||.|++..+ .....+........ ..+.++.+++++++|++||||+|++|.|+.++++.+++++|||++++
T Consensus 162 PV~l~iP~dv~~~~--~~~~~~~~~~~~~~---~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 236 (566)
T 1ozh_A 162 SAFVSLPQDVVDGP--VSGKVLPASGAPQM---GAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHI 236 (566)
T ss_dssp EEEEEEEHHHHHSC--EEECCCCCCCSCEE---CCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCC
T ss_pred eEEEEeChhhhhcc--ccccccccccccCC---CCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCC
Confidence 99999999986532 11110000001100 11235679999999999999999999999988899999999999999
Q ss_pred CeEecCCCcccCCCCCC-CcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeecCC
Q 014091 265 PIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (431)
Q Consensus 265 Pv~tt~~gkg~~~~~hp-~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~ 343 (431)
||++|++|||.+|++|| +++|++ |..++..+++++++||+||.+|+.+.+..+..|. .++.++||||.|+.+++ .
T Consensus 237 Pv~~t~~~kg~~~~~~p~~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~-~ 312 (566)
T 1ozh_A 237 PVTSTYQAAGAVNQDNFSRFAGRV-GLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEE-R 312 (566)
T ss_dssp CEEECGGGTTTCCTTTCTTEEEEC-SSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCB-T
T ss_pred CEEEccccCCcCCCCChHhhcCCC-cccCCHHHHHHHHhCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhC-C
Confidence 99999999999999999 999997 8888888899999999999999965444333343 23678999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhcccc---chhhhhhhccC--CCC-CCCCCCCCCC-cCHHHHHHHHHhhCCCCCEEEe
Q 014091 344 PSLGW----VFMADFLSALAKKLRKNT---TALENYRRIYV--PPG-IPVKRAQNEP-LRVNVLFKHIQDMLSGDTAVIA 412 (431)
Q Consensus 344 ~~~~~----~d~~~~L~~L~~~l~~~~---~~~~~~~~~~~--~~~-~~~~~~~~~~-l~~~~~~~~L~~~l~~~~ivv~ 412 (431)
....+ .|++++|++|.+.+.... .|+..+.+... ... .......+.+ +++..+++.|++.++++++++.
T Consensus 313 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~ 392 (566)
T 1ozh_A 313 NYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTV 392 (566)
T ss_dssp TBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEE
T ss_pred CCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 44333 389999999998775422 13222221100 000 0000112345 9999999999999999999999
Q ss_pred cCChhhhhcc
Q 014091 413 ETGDSWFNCQ 422 (431)
Q Consensus 413 D~G~~~~~~~ 422 (431)
|+|++..|..
T Consensus 393 d~G~~~~~~~ 402 (566)
T 1ozh_A 393 DMGSFHIWIA 402 (566)
T ss_dssp CSSHHHHHHH
T ss_pred cCcHHHHHHH
Confidence 9999877654
No 13
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=5.3e-66 Score=538.88 Aligned_cols=377 Identities=16% Similarity=0.178 Sum_probs=312.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++++|++.|+++||++|||+||+.+++|+++|. ++|++|.++||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~ 78 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNA 78 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHH
Confidence 478999999999999999999999999999999994 47999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-C
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 183 (431)
++||++|+.+++|||+|+|++++..++++. ++ +..||..+|++++||+.++++++++++.+++|++.|.++ +
T Consensus 79 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~ 151 (528)
T 1q6z_A 79 MGALSNAWNSHSPLIVTAGQQTRAMIGVEA-----LL--TNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQ 151 (528)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHTTTC-----TT--CCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhhcCCCEEEEeCCCcccccCCCc-----cc--ccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998877763 22 114789999999999999999999999999999999987 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC
Q 014091 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (431)
Q Consensus 184 GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~ 263 (431)
|||||+||.|++..+.+.. ....+....... ..+.++.+++++++|+++|||+|++|.|+.++++.+++++|+|+++
T Consensus 152 GPV~l~iP~d~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 228 (528)
T 1q6z_A 152 GPVYLSVPYDDWDKDADPQ-SHHLFDRHVSSS--VRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLK 228 (528)
T ss_dssp CCEEEEEEGGGTTSBCCGG-GGGGTTCCCCCC--CCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred CcEEEEechhhhhCccccc-cccccccCCCCC--CCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHC
Confidence 9999999999976421110 000000000000 1123567999999999999999999999988889999999999999
Q ss_pred CCe-EecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCceeec
Q 014091 264 YPI-AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVG 341 (431)
Q Consensus 264 ~Pv-~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~~~ 341 (431)
+|| ++|++|||.||++||+++|++ | .++..+++++++||+||++|+++.++.+..|..++ ++.++||||.|+.+++
T Consensus 229 ~Pv~~~~~~g~g~~~~~~p~~~G~~-g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 306 (528)
T 1q6z_A 229 APVWVAPSAPRCPFPTRHPCFRGLM-P-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAA 306 (528)
T ss_dssp CCEEECSSCSBCCSCTTSTTEEEEC-C-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHH
T ss_pred CCEEEeccCccccCCCCCccccCcC-C-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhC
Confidence 999 778899999999999999997 6 77888899999999999999999998887776543 5789999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCChh
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~ivv~D~G~~ 417 (431)
.. ..+ .|++++|++|.+.+.....+..+|++.. . . ......++++..+++.|++.+|++++++.|+|++
T Consensus 307 -~~-~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~ 379 (528)
T 1q6z_A 307 -RA-PMGDAIVADIGAMASALANLVEESSRQLPTAAPEP--A--K-VDQDAGRLHPETVFDTLNDMAPENAIYLNESTST 379 (528)
T ss_dssp -HC-SSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCCC--C--C-CCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTS
T ss_pred -CC-CCCeeEeCCHHHHHHHHHHHhhccccchHHHHhhh--h--c-ccccCCCcCHHHHHHHHHhhCCCCeEEEECCccc
Confidence 33 332 3899999999988764332222222110 0 0 1112346999999999999999999999999999
Q ss_pred hhhccc
Q 014091 418 WFNCQK 423 (431)
Q Consensus 418 ~~~~~~ 423 (431)
..|..+
T Consensus 380 ~~~~~~ 385 (528)
T 1q6z_A 380 TAQMWQ 385 (528)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 14
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=8e-67 Score=548.94 Aligned_cols=384 Identities=20% Similarity=0.233 Sum_probs=313.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.|+++++|++.|+++||++|||+||+.+++|+++|.++ +|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 37999999999999999999999999999999999865 5999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCCh-HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCC
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 183 (431)
++||++|+.+++|||+|+|++++...+++. + |. .||..+|+++|||++++++++++++.+++|++.|.+++
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~---Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNT-----L---QAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCC-----T---TCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchh-----h---hhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998877652 2 34 58999999999999999999999999999999999974
Q ss_pred -CcEEEEEccCCCCCC-CCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHH
Q 014091 184 -KPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (431)
Q Consensus 184 -GPv~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~ 261 (431)
|||||+||.|++..+ .+.....+. ....... ..+.++.+++++++|+++|||+|++|.|+.++++.+++++|||+
T Consensus 154 ~GPV~l~iP~dv~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~ 230 (563)
T 2uz1_A 154 RGPVLLDLPWDILMNQIDEDSVIIPD-LVLSAHG--ARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAA 230 (563)
T ss_dssp CCCEEEEEEHHHHHCEEEGGGSCCCC-CCCCSSC--CBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CceEEEEeCHHHhhhhcccccccccc-cccCCCC--CCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHH
Confidence 999999999954321 111100010 1000001 12245679999999999999999999999988899999999999
Q ss_pred hCCCeEecCCCcccCCCC-CCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCC-CcceEEEccCcee
Q 014091 262 TGYPIAIMPSGKGLVPEH-HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVT 339 (431)
Q Consensus 262 ~~~Pv~tt~~gkg~~~~~-hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~I~Id~d~~~ 339 (431)
+++||++|++|||.||++ ||+++|++ | .++..+++ ++++|+||.+|+++.++.+..|..+.+ +.++||||.|+.+
T Consensus 231 ~~~Pv~~t~~~~g~~~~~~~p~~~G~~-g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 307 (563)
T 2uz1_A 231 TGVPVFADYEGLSMLSGLPDAMRGGLV-Q-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACE 307 (563)
T ss_dssp HCCCEEECGGGGGGGTTSCGGGEEEEG-G-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGG
T ss_pred hCCcEEEcCcccCcCCCCCChhhcCCC-C-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHH
Confidence 999999999999999999 99999997 6 77777778 899999999999999988877777666 7899999999998
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhccc----c--chhh---h-hhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 014091 340 VGNGPSLGW----VFMADFLSALAKKLRKN----T--TALE---N-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (431)
Q Consensus 340 ~~~~~~~~~----~d~~~~L~~L~~~l~~~----~--~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~ 405 (431)
++ ..+..+ .|++++|++|.+.+... . .|.. . +++....... ...... ++++..+++.|++.++
T Consensus 308 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~l~ 384 (563)
T 2uz1_A 308 LG-RLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAA-KSSSEH-ALHPFHASQVIAKHVD 384 (563)
T ss_dssp TT-SSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCSS-SCCHHHHHHHHHTTCS
T ss_pred hC-CCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhh-ccccCC-CcCHHHHHHHHHHhCC
Confidence 87 443332 38999999999887641 1 1221 2 2111000000 000112 6999999999999999
Q ss_pred CCCEEEecCChhhhhcc-ccccC
Q 014091 406 GDTAVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 406 ~~~ivv~D~G~~~~~~~-~~~~p 427 (431)
++++++.|+|++.+|.. .+.++
T Consensus 385 ~~~iv~~d~G~~~~~~~~~~~~~ 407 (563)
T 2uz1_A 385 AGVTVVADGALTYLWLSEVMSRV 407 (563)
T ss_dssp TTEEEEECSSHHHHHHHHHHTTS
T ss_pred CCcEEEEcCchHHHHHHHhcccc
Confidence 99999999999877644 33443
No 15
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=1.9e-65 Score=543.78 Aligned_cols=389 Identities=15% Similarity=0.189 Sum_probs=314.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n 103 (431)
.++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||+|+| | ++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 379999999999999999999999999999999998756899999999999999999999999 7 89999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++...+++ . +|..||..+|+++|||++++.+++++++.+++|++.|.++
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-----~---~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r 177 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKE-----D---FQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 177 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTT-----C---TTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcc-----c---ccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999876654 2 2345899999999999999999999999999999999987
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh
Q 014091 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~ 262 (431)
||||||+||.|++..+.+.......+ .+...+ ...++.+++++++|+++|||+|++|.|+.++++.+++++|||++
T Consensus 178 ~GPV~l~iP~d~~~~~~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 253 (616)
T 2pan_A 178 PGPVLVDLPFDVQVAEIEFDPDMYEP--LPVYKP--AASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELT 253 (616)
T ss_dssp CCCEEEEEEHHHHHSEEECCGGGCCC--CCCCCC--CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CceEEEEcchhhhhcccccccccccc--cccCCC--CCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHh
Confidence 59999999999965311110000001 010001 11256799999999999999999999998888999999999999
Q ss_pred CCCeEecCCCcccCCCCCCCcceeecCCCCCH-HHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceeec
Q 014091 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS-FCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (431)
Q Consensus 263 ~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~-~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~ 341 (431)
++||++|++|||.||++||+++|++ |..++. .++++++++|+||+||++++++.+..+..+.++.++||||+|+.+++
T Consensus 254 ~~PV~~t~~~~g~~~~~hp~~~G~~-g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 332 (616)
T 2pan_A 254 SVPVIPTLMGWGCIPDDHELMAGMV-GLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG 332 (616)
T ss_dssp TCCEEECTTTTTSSCTTSTTBCCCC-SSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT
T ss_pred CCCEEEccccCccCCCCCccccCCc-cccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC
Confidence 9999999999999999999999996 666666 88899999999999999998766655555556788999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhcc------c--cchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 014091 342 NGPSLGW----VFMADFLSALAKKLRK------N--TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (431)
Q Consensus 342 ~~~~~~~----~d~~~~L~~L~~~l~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~~~~i 409 (431)
..+..+ .|++.+|++|.+.+.. . ..|+....+...............++++..+++.|++.++++++
T Consensus 333 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~i 411 (616)
T 2pan_A 333 -RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVC 411 (616)
T ss_dssp -SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEE
T ss_pred -CCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcE
Confidence 443332 3899999999887642 1 11222211111010000011123469999999999999999999
Q ss_pred EEecCChhhhhcc-ccccCC
Q 014091 410 VIAETGDSWFNCQ-KLRLPE 428 (431)
Q Consensus 410 vv~D~G~~~~~~~-~~~~p~ 428 (431)
++.|+|++.+|.. .+.++.
T Consensus 412 vv~d~G~~~~~~~~~~~~~~ 431 (616)
T 2pan_A 412 YVTTIGLSQIAAAQMLHVFK 431 (616)
T ss_dssp EEECSSHHHHHHHHHCCCCS
T ss_pred EEEcCcHHHHHHHHhcccCC
Confidence 9999999987753 454443
No 16
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=1e-65 Score=541.50 Aligned_cols=387 Identities=20% Similarity=0.215 Sum_probs=313.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCc-hHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDF-NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~-~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
.++++++|++.|+++||++|||+||+. +++|+++|. + |++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 489999999999999999999999999 999999997 4 999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCC-CceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
+++||++|+.+++|||+|+|++++..+++ + .+ |..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~-----~~---Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPND-----TH---QCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTE 159 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT-----ST---TCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcC-----cc---ccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987776 4 22 345899999999999999999999999999999999987
Q ss_pred C-CcEEEEEccCCCCCCCC----CCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHH
Q 014091 183 S-KPVYISISCNLPGIPHP----TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (431)
Q Consensus 183 ~-GPv~l~iP~dv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~ 257 (431)
| |||||+||.|++..+.. .......+. ..+......+.++.+++++++|+++|||+|++|.|+.++++.+++++
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 238 (573)
T 2iht_A 160 PVGPSFISLPVDLLGSSEGIDTTVPNPPANTP-AKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRA 238 (573)
T ss_dssp SCCCEEEEEEHHHHTCCTTCC---CCCCCCCC-SSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CCceEEEEecchHhhhhhcccccCCccccccC-CCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHH
Confidence 5 99999999999653200 111000110 11110000145678999999999999999999999988889999999
Q ss_pred HHHHhCCCeEecCCCcccCCCCCCCcceee----cCCCCCHHHHHHhhhCCEEEEeCCc-cCcccccccccCCCCcceEE
Q 014091 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTY----WGAVSSSFCGEIVESADAYVFVGPI-FNDYSSVGYSLLIKKEKAII 332 (431)
Q Consensus 258 lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~----~G~~~~~~~~~~~~~aD~vl~lG~~-~~~~~~~~~~~~~~~~~~I~ 332 (431)
|||++++||++|++|||+||++||+++|++ .|..++..++++++++|+||.+|++ +.++.+..|. ..++.++||
T Consensus 239 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~i~ 317 (573)
T 2iht_A 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-KGIEKKTVR 317 (573)
T ss_dssp HHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-CSSCCEEEE
T ss_pred HHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-CCCCCeEEE
Confidence 999999999999999999999999999985 3667777888999999999999999 9888776665 225678999
Q ss_pred EccCceeecCCCcccc----ccHHHHHHHHHHHhcccc-chhhhh---hhccCCCCCCCCCCCCCCcCHHHHHHHHHhhC
Q 014091 333 VQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-TALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (431)
Q Consensus 333 Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l 404 (431)
||.|+.+++ ..+..+ .|++.+|++|.+.+.... ..|..+ ++.... ..........++++..+++.|++.+
T Consensus 318 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 395 (573)
T 2iht_A 318 ISPTVNPIP-RVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAE-FLADPETYEDGMRVHQVIDSMNTVM 395 (573)
T ss_dssp EESSCCSCT-TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHH-HHTCCCCCSSSBCHHHHHHHHHHHH
T ss_pred EeCCHHHhC-CCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhh-hhhccccCcCCcCHHHHHHHHHHhc
Confidence 999999987 443333 389999999998776421 111211 111000 0000111234699999999999999
Q ss_pred CC-----CCEEEecCChhhhhcc-ccccC
Q 014091 405 SG-----DTAVIAETGDSWFNCQ-KLRLP 427 (431)
Q Consensus 405 ~~-----~~ivv~D~G~~~~~~~-~~~~p 427 (431)
++ ++++++|+|++..|.. .++++
T Consensus 396 ~~~~~~~~~iv~~d~G~~~~~~~~~~~~~ 424 (573)
T 2iht_A 396 EEAAEPGEGTIVSDIGFFRHYGVLFARAD 424 (573)
T ss_dssp HHHSCTTCCEEEECSSHHHHHHHHHCCCC
T ss_pred ccccCCCCcEEEEcCcHhHHHHHHhcCcC
Confidence 99 9999999999987754 34444
No 17
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=7.9e-65 Score=536.03 Aligned_cols=383 Identities=16% Similarity=0.167 Sum_probs=312.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC-CCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL 102 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~ 102 (431)
+.|+++++|++.|+++||++|||+||+.+++|+++|.++ ++|++|.+|||++|+|||+||+|.|| ++||++|+|||++
T Consensus 2 ~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~ 81 (590)
T 1v5e_A 2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS 81 (590)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHH
T ss_pred CCccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHH
Confidence 458999999999999999999999999999999999875 58999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 182 (431)
|+++||++|+.+++|||+|+|++++...+++ .+ |..||.++|+++|||++++++++++++.+++||+.|.++
T Consensus 82 N~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 153 (590)
T 1v5e_A 82 HLINGLYDAAMDNIPVVAILGSRPQRELNMD-----AF---QELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAK 153 (590)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcccCCCC-----cc---cccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999877664 22 235789999999999999999999999999999999997
Q ss_pred C-CcEEEEEccCCCCCCCCCCCC--C--CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHH
Q 014091 183 S-KPVYISISCNLPGIPHPTFAR--D--PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (431)
Q Consensus 183 ~-GPv~l~iP~dv~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~ 257 (431)
+ ||||| ||.|++..+.+.... . ..+. ..+. .+..+.+++++++|+++|||+|++|.|+ + ++.+++++
T Consensus 154 ~~GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~ 225 (590)
T 1v5e_A 154 RGVAVLE-VPGDFAKVEIDNDQWYSSANSLRK-YAPI----APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQE 225 (590)
T ss_dssp TSEEEEE-EETTGGGCEEEGGGCCCCGGGCCC-CCCC----CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHH
T ss_pred CCceEEE-EccchhhcccCccccccccccccc-CCCC----CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHH
Confidence 5 99999 999997532111000 0 0110 1111 1234679999999999999999999999 7 88999999
Q ss_pred HHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccc-cccccCCCCcceEEEccC
Q 014091 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLIKKEKAIIVQPH 336 (431)
Q Consensus 258 lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~I~Id~d 336 (431)
|||++++||++|++|||.||++||+++|+ .|..++..+++++++||+||++|+++++... ..+ + ++.++||||+|
T Consensus 226 lae~~~~Pv~~t~~g~g~~~~~~p~~~G~-~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d 301 (590)
T 1v5e_A 226 LARKIKAPVITTGKNFETFEWDFEALTGS-TYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDID 301 (590)
T ss_dssp HHHHHTCCEEECTTCGGGSCTTCTTEEEE-SSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESC
T ss_pred HHHHHCCCEEEccccCcCCCCCChhhCcc-CcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCC
Confidence 99999999999999999999999999999 5999999999999999999999999987652 111 2 57799999999
Q ss_pred ceeecCCCcccc----ccHHHHHHHHHHHhcccc--chhhhhhhccCCC-CCCCC--CCCCCCcCHHHHHHHHHhhCCCC
Q 014091 337 RVTVGNGPSLGW----VFMADFLSALAKKLRKNT--TALENYRRIYVPP-GIPVK--RAQNEPLRVNVLFKHIQDMLSGD 407 (431)
Q Consensus 337 ~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~--~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~L~~~l~~~ 407 (431)
+.+++ ++...+ .|++.+|++|.+.+.... .|...+.+..... ..... .....++++..+++.|++.++++
T Consensus 302 ~~~~~-~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 380 (590)
T 1v5e_A 302 PAMLG-KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADED 380 (590)
T ss_dssp GGGTT-SSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTT
T ss_pred HHHHC-CCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCC
Confidence 99997 444333 389999999998876422 1222221110000 00000 01234689999999999999999
Q ss_pred CEEEecCChhhhhc-cccccCC
Q 014091 408 TAVIAETGDSWFNC-QKLRLPE 428 (431)
Q Consensus 408 ~ivv~D~G~~~~~~-~~~~~p~ 428 (431)
+++++|+|++.+|. ++++++.
T Consensus 381 ~ivv~d~G~~~~~~~~~~~~~~ 402 (590)
T 1v5e_A 381 AIYSIDVGNSTQTSIRHLHMTP 402 (590)
T ss_dssp CEEEECSSHHHHGGGGTCCCCT
T ss_pred CEEEECCchHHHHHHHhcccCC
Confidence 99999999999885 4555554
No 18
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=9.6e-66 Score=544.63 Aligned_cols=387 Identities=14% Similarity=0.105 Sum_probs=307.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
..++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+|||+||+|+|| +|||++|+|||++|
T Consensus 29 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N 108 (604)
T 2x7j_A 29 PITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAAN 108 (604)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHH
Confidence 45789999999999999999999999999999999987668999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcch-------HHHHHHHHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD-------AHELIDTAI 176 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~-------~~~~i~~A~ 176 (431)
+++||++|+.+++|||+|||++++..++++. + |..||..+|+++|||+++++++++ +++.+++||
T Consensus 109 ~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~ 180 (604)
T 2x7j_A 109 FYPAVVEAHYSRVPIIVLTADRPHELREVGA-----P---QAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAA 180 (604)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGSSSCC-----T---TCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCC-----C---CcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999998877652 2 345889999999999999999998 999999999
Q ss_pred HHhhhC-CCcEEEEEccCCCCCCCCCCCCCC--CCccCCC-CCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchH
Q 014091 177 STALKE-SKPVYISISCNLPGIPHPTFARDP--VPFFLAP-KVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ 252 (431)
Q Consensus 177 ~~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~ 252 (431)
+.|.++ +|||||+||.|++..+.......+ ....... .+....+.++.+++++++|++||||+|++|.++ ++++.
T Consensus 181 ~~A~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~ 259 (604)
T 2x7j_A 181 GEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADK 259 (604)
T ss_dssp HHHHSSSCCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHH
T ss_pred HHhhCCCCCcEEEEcccCccCCCcccccccccccccccccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHH
Confidence 999985 699999999999653211100000 0000000 000011234568999999999999999999998 56788
Q ss_pred HHHHHHHHHhCCCeEecCCCcccC-CCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceE
Q 014091 253 KAFIELADATGYPIAIMPSGKGLV-PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAI 331 (431)
Q Consensus 253 ~~l~~lae~~~~Pv~tt~~gkg~~-~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I 331 (431)
+++++|||++++||++|+++++.+ |++||+++|.+.+..++..++++++ +|+||.||+++.+..+..|....++.++|
T Consensus 260 ~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i 338 (604)
T 2x7j_A 260 ENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQI 338 (604)
T ss_dssp HHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEE
Confidence 999999999999999999987655 8889999998755777877888776 89999999999876654554323356899
Q ss_pred EEccCceeecCCCcccc----ccHHHHHHHHHHHhc-c-c-cchhhhhhhccC--CCCCCCCCCCCCCcCHHHHHHHHHh
Q 014091 332 IVQPHRVTVGNGPSLGW----VFMADFLSALAKKLR-K-N-TTALENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQD 402 (431)
Q Consensus 332 ~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~-~-~-~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~L~~ 402 (431)
|||+|+.+++ .....+ .|++++|++|.+.+. . . ..|...|.+... ..... ......++++..+++.|++
T Consensus 339 ~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~ 416 (604)
T 2x7j_A 339 VIDEDGGWRD-PTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQ-TISSEDVSFEGNLYRILQH 416 (604)
T ss_dssp EECTTCCCCC-TTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHH-TSCCCCTTSHHHHHHHHHH
T ss_pred EECCCCCccC-CCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHH
Confidence 9999999887 433332 399999999998874 2 1 223322221100 00000 0112346999999999999
Q ss_pred hCCCCCEEEecCChhhhhccc
Q 014091 403 MLSGDTAVIAETGDSWFNCQK 423 (431)
Q Consensus 403 ~l~~~~ivv~D~G~~~~~~~~ 423 (431)
.+|++++|++|+|++..|...
T Consensus 417 ~lp~d~iv~~d~g~~~~~~~~ 437 (604)
T 2x7j_A 417 LVPENSSLFVGNSMPIRDVDT 437 (604)
T ss_dssp HSCTTCEEEECTTHHHHHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHH
Confidence 999999999999998777443
No 19
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-65 Score=539.89 Aligned_cols=382 Identities=14% Similarity=0.136 Sum_probs=299.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
+++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 4689999999999999999999999999999999987678999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHH-------HHHHHHH
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE-------LIDTAIS 177 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~-------~i~~A~~ 177 (431)
++||++||.+++|||+|||++++...+++ .+ |..||..+|+++|||++++.+++++++ .+++||+
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~-----~~---Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVG-----AP---QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSS-----CT---TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCC-----CC---CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877665 22 335789999999999999999998765 8999999
Q ss_pred HhhhC-CCcEEEEEccCCCCCCCCCCCCCCC----Cc--cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhc
Q 014091 178 TALKE-SKPVYISISCNLPGIPHPTFARDPV----PF--FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK 250 (431)
Q Consensus 178 ~A~~~-~GPv~l~iP~dv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~ 250 (431)
.|.++ ||||||+||.|++..+ ....... +. ..........++++.+++++++|++ |||+|++|+|+.+ +
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~ 237 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLVP--ILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-E 237 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCCC--CCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-T
T ss_pred HhhCCCCCcEEEECccCCCCCC--CcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-H
Confidence 99997 6999999999986531 1110000 00 0000000112346789999999999 9999999999986 4
Q ss_pred hHHHHHHHHHHhCCCeEecCC-CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcc
Q 014091 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (431)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~-gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (431)
+.+++++|||++++||++|++ +++.+|++||+++|.|.+..+. ...+.+++||+||.+|+++.++.+..|....++.+
T Consensus 238 ~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~-~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~ 316 (578)
T 3lq1_A 238 LEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKE-AEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIR 316 (578)
T ss_dssp CHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTS-HHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcC-ccccccCCCCEEEEeCCcccchhHHHHHhcCCCCE
Confidence 679999999999999999965 6999999999999987443443 44456889999999999886655444543345789
Q ss_pred eEEEccCceeecCCCcccc----ccHHHHHHHHHHHhcccc---chhhhhhhccC--CC-CCCCCCCCCCCcCHHHHHHH
Q 014091 330 AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT---TALENYRRIYV--PP-GIPVKRAQNEPLRVNVLFKH 399 (431)
Q Consensus 330 ~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~---~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~ 399 (431)
+||||+|+.+++ .....+ .|++++|++|.+.+.... .|...|.+... .. ... ......++++..+++.
T Consensus 317 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 394 (578)
T 3lq1_A 317 FYVVDPGAAWKD-PIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLA-EMANTTILEEGKIVAE 394 (578)
T ss_dssp EEEECTTCCCCC-TTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHH-HSCC----CTTHHHHH
T ss_pred EEEECCCCCcCC-CCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHH-hhhcCCCCCHHHHHHH
Confidence 999999999887 443333 399999999998776432 13233321100 00 000 0112356999999999
Q ss_pred HHhhCCCCCEEEecCChhhhhcc
Q 014091 400 IQDMLSGDTAVIAETGDSWFNCQ 422 (431)
Q Consensus 400 L~~~l~~~~ivv~D~G~~~~~~~ 422 (431)
|++.+|++++++.|.|.+..|..
T Consensus 395 l~~~l~~~~iv~~~~~~~~~~~~ 417 (578)
T 3lq1_A 395 LRRLLPDKAGLFIGNSMPIRDVD 417 (578)
T ss_dssp HHHHSCSEEEEEECSSHHHHHHH
T ss_pred HHHhCCCCCeEEEeCccHHHHHH
Confidence 99999999999999998866654
No 20
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=3.1e-65 Score=537.13 Aligned_cols=378 Identities=18% Similarity=0.190 Sum_probs=300.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
+.|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 6 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N 84 (564)
T 2q28_A 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN 84 (564)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence 45799999999999999999999999999999999976 47999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++..++.+ .+.+|..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 158 (564)
T 2q28_A 85 GLTALANATVNGFPMIMISGSSDRAIVDLQ------QGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGR 158 (564)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTT------SCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCC------CCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998865521 0112345899999999999999999999999999999999985
Q ss_pred CCcEEEEEccCCCCCCCCCC--CCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTF--ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
||||||+||.|++..+.+.. .....+. ..+. ....+.++.+++++++|++||||+|++|.|+.++++.+++++|||
T Consensus 159 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 236 (564)
T 2q28_A 159 PGGVYLDLPANVLAATMEKDEALTTIVKV-ENPS-PALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIE 236 (564)
T ss_dssp CCEEEEEEEHHHHHCEEEHHHHHHTCCCC-SCSS-CCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHH
T ss_pred CceEEEEcCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHH
Confidence 69999999999864311100 0000010 1101 111234567999999999999999999999988889999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccCceee
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~ 340 (431)
++++||++|++|||+||++||+++|. ..++++++||+||++|+++++..++++..+.++.++||||.|+.++
T Consensus 237 ~~~~Pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 308 (564)
T 2q28_A 237 SAQIPFLPMSMAKGILEDTHPLSAAA--------ARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEI 308 (564)
T ss_dssp HHTCCEEECGGGTTSSCTTCTTBCGG--------GHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGT
T ss_pred HhCCCEEeccCccccCCCCChhhcCh--------HHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHh
Confidence 99999999999999999999999985 2467889999999999999866554433445678999999999988
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhcccc-----chhhhhhhccCC---CCCCCCCCCCCCcCHHHHHHHHHhhC--CC
Q 014091 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYRRIYVP---PGIPVKRAQNEPLRVNVLFKHIQDML--SG 406 (431)
Q Consensus 341 ~~~~~~~~----~d~~~~L~~L~~~l~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~L~~~l--~~ 406 (431)
+ .....+ .|++++|++|.+.+.... .|+..+.+.... ...........++++..+++.|++.+ |+
T Consensus 309 ~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 387 (564)
T 2q28_A 309 D-SNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQ 387 (564)
T ss_dssp T-SSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCT
T ss_pred c-CCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCC
Confidence 7 433332 389999999988775421 122211111000 00000011235699999999999999 99
Q ss_pred CCEEEecCChhhhh
Q 014091 407 DTAVIAETGDSWFN 420 (431)
Q Consensus 407 ~~ivv~D~G~~~~~ 420 (431)
+++++.|.|++..|
T Consensus 388 d~ivv~dg~~~~~~ 401 (564)
T 2q28_A 388 DIYLVNEGANTLDN 401 (564)
T ss_dssp TCEEEEESSHHHHH
T ss_pred CEEEEECCchHHHH
Confidence 99999997766544
No 21
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=4.2e-65 Score=536.44 Aligned_cols=379 Identities=18% Similarity=0.193 Sum_probs=301.0
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHH
Q 014091 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 103 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n 103 (431)
..++++++|++.|+++||++|||+||+.+++|+++|.++ +|++|.+|||++|+|||+||+|+|| ++||++|+|||++|
T Consensus 8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 458999999999999999999999999999999999864 7999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 182 (431)
+++||++|+.+++|||+|+|++++...+.+ .+.+|..||..+|+++|||++++++++++++.+++|++.|.++
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 160 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQ------QGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGR 160 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTT------CCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCC------CCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998866521 0112345899999999999999999999999999999999985
Q ss_pred CCcEEEEEccCCCCCCCCCCC--CCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH
Q 014091 183 SKPVYISISCNLPGIPHPTFA--RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (431)
Q Consensus 183 ~GPv~l~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae 260 (431)
+|||||+||.|++..+.+... ....+. ..+. ....+.++.+++++++|++||||+|++|.|+.++++.+++++|||
T Consensus 161 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 238 (568)
T 2c31_A 161 PGGVYVDLPAKLFGQTISVEEANKLLFKP-IDPA-PAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVE 238 (568)
T ss_dssp CCEEEEEEETHHHHCEEEHHHHHHHCCCC-SCSS-CCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHH
T ss_pred CceEEEeCCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHH
Confidence 699999999998643111000 000000 0000 001224567999999999999999999999988889999999999
Q ss_pred HhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCccccccc-ccCC-CCcceEEEccCce
Q 014091 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLI-KKEKAIIVQPHRV 338 (431)
Q Consensus 261 ~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~-~~~~-~~~~~I~Id~d~~ 338 (431)
++++||++|++|||.||++||+++|. ..++++++||+||+||+++++..+.++ ..+. ++.++||||+|+.
T Consensus 239 ~~~~Pv~~t~~~~g~~~~~~p~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~ 310 (568)
T 2c31_A 239 ETGIPFLPMGMAKGLLPDNHPQSAAA--------TRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQAN 310 (568)
T ss_dssp HHTCCEEECGGGTTSSCTTCTTBCGG--------GHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGG
T ss_pred HhCCCEEecccccccCCCCChhhcch--------HHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHH
Confidence 99999999999999999999999986 246788999999999999987665443 3344 5789999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhcccc----chhhhhhhccCC--CCCCC-CCCC--CCCcCHHHHHHHHHhhC-
Q 014091 339 TVGNGPSLGW----VFMADFLSALAKKLRKNT----TALENYRRIYVP--PGIPV-KRAQ--NEPLRVNVLFKHIQDML- 404 (431)
Q Consensus 339 ~~~~~~~~~~----~d~~~~L~~L~~~l~~~~----~~~~~~~~~~~~--~~~~~-~~~~--~~~l~~~~~~~~L~~~l- 404 (431)
+++ .....+ .|++++|++|.+.+.... .|+..+.+.... ..... .... ..++++..+++.|++.+
T Consensus 311 ~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 389 (568)
T 2c31_A 311 EMD-SNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML 389 (568)
T ss_dssp GTT-SSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHH
T ss_pred Hhc-CCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhc
Confidence 887 433322 389999999998876421 122111111000 00000 0011 35699999999999999
Q ss_pred -CCCCEEEecCChhhhhc
Q 014091 405 -SGDTAVIAETGDSWFNC 421 (431)
Q Consensus 405 -~~~~ivv~D~G~~~~~~ 421 (431)
|++++++.|.|++..|.
T Consensus 390 ~~~~~iv~~dg~~~~~~~ 407 (568)
T 2c31_A 390 ANPDISLVNEGANALDNT 407 (568)
T ss_dssp HCCSSEEEEESSHHHHHH
T ss_pred CCCCeEEEECChhHHHHH
Confidence 99999999988765543
No 22
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=4.2e-62 Score=512.05 Aligned_cols=368 Identities=14% Similarity=0.049 Sum_probs=280.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~ 104 (431)
.++++|+|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 4789999999999999999999999999999999987678999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcch------HHHHHHHHHHH
Q 014091 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAIST 178 (431)
Q Consensus 105 ~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~i~~A~~~ 178 (431)
++||++||.+++|||+|||++++...+++. + |..||..+|+++|||++++.++++ +++.+++|++
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~- 157 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGA-----N---QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG- 157 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSC-----T---TCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCC-----C---ccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh-
Confidence 999999999999999999999999887762 2 335789999999999999999875 7777777772
Q ss_pred hhhCCCcEEEEEccCCCCCCCCCCCC----CCCCc---cCCCCCCChhhHHHHH-HHHHHHHHhcCCCEEEeCCccchhc
Q 014091 179 ALKESKPVYISISCNLPGIPHPTFAR----DPVPF---FLAPKVSNQLGLEAAV-EATADFLNKAVKPVLVGGPNIRVAK 250 (431)
Q Consensus 179 A~~~~GPv~l~iP~dv~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~-~~~~~~L~~a~rpvI~~G~g~~~~~ 250 (431)
...||||||+||.|++..+...... .+... ...+... .+..+.+ ++++++|.+||||+|++|.+ +++
T Consensus 158 -~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~ 232 (556)
T 3hww_A 158 -TLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLR--EAPRLESEKQRDWFFWRQKRGVVVAGRM--SAE 232 (556)
T ss_dssp -SCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSC--CCCCCCCCCCTTHHHHTTSCEEEEECBC--CHH
T ss_pred -cCCCCCEEEeCCcCCCCCCCcccccccccccccccccccccccc--ccccccchhhhhhhhccCCCeEEEECCC--ChH
Confidence 1236999999999965421100000 00000 0001000 0000111 24556788999999999974 457
Q ss_pred hHHHHHHHHHHhCCCeEecCC-CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcc
Q 014091 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (431)
Q Consensus 251 a~~~l~~lae~~~~Pv~tt~~-gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (431)
+.+++++|||++++||++|++ +||.++++||+++| +..+++++++||+||+||+++++..+.+|...++..+
T Consensus 233 a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg-------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~ 305 (556)
T 3hww_A 233 EGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG-------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEE 305 (556)
T ss_dssp HHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTT-------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSE
T ss_pred HHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhc-------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCe
Confidence 899999999999999999986 89999999998775 3578889999999999999998776655654334458
Q ss_pred eEEEccCceeecCCCcccc----ccHHHHHHHHHHHhccccchhhhhhhccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 014091 330 AIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (431)
Q Consensus 330 ~I~Id~d~~~~~~~~~~~~----~d~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~l~ 405 (431)
+||||+|+.+++ .++..+ .|++.+|++|.+.. ...|...|.+.+...... .....+++++..+++.|++.+|
T Consensus 306 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~ 381 (556)
T 3hww_A 306 YWIVDDIEGRLD-PAHHRGRRLIANIADWLELHPAEK--RQPWCVEIPRLAEQAMQA-VIARRDAFGEAQLAHRICDYLP 381 (556)
T ss_dssp EEEEESSCSCCC-TTCCSEEEEESCHHHHHHHSCCCC--CCCCCSSHHHHHHHHHHH-HHTTCCSSSHHHHHHTGGGTCC
T ss_pred EEEECCCCccCC-CCCCceEEEEcCHHHHHHhccccc--chHHHHHHHHHHHHHHHH-HhhcccCcCHHHHHHHHHHhCC
Confidence 999999999997 444333 38999999864321 111222221110000000 0012457999999999999999
Q ss_pred CCCEEEecCChhh
Q 014091 406 GDTAVIAETGDSW 418 (431)
Q Consensus 406 ~~~ivv~D~G~~~ 418 (431)
+++++++|++...
T Consensus 382 ~~~iv~~g~~~~~ 394 (556)
T 3hww_A 382 EQGQLFVGNSLVV 394 (556)
T ss_dssp TTCEEEECSSHHH
T ss_pred CCCeEEEeCCcHH
Confidence 9999998887654
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.88 E-value=6.8e-24 Score=188.00 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCC--Cc--ceeecCCCCCHHHH-
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HF--IGTYWGAVSSSFCG- 297 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp--~~--~G~~~G~~~~~~~~- 297 (431)
..+++++++|++||||+|++|+|+.++++.+++++|+|++++||++|++|||+||++|| +| +|++ |..++..++
T Consensus 22 ~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~-G~~~~~~~~~ 100 (170)
T 3cf4_G 22 VSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHML-GFYLTDPKWP 100 (170)
T ss_dssp CCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHH-HHHTTCTTCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeec-cccCChhhhh
Confidence 34889999999999999999999998899999999999999999999999999999999 99 9974 776766777
Q ss_pred --HHhhhCCEEEEeCCcc--CcccccccccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHHhc
Q 014091 298 --EIVESADAYVFVGPIF--NDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 298 --~~~~~aD~vl~lG~~~--~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~ 363 (431)
+++++||+||++|+++ +++.++.|..+.+ .++|+++.+..... ...+..+.++++|+.|.+.+.
T Consensus 101 ~~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~~~~~~-~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 101 GLDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERGYIQNA-TMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp CSSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSSCCTTS-SEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCCcccch-hhhhccCCHHHHHHHHHHHHh
Confidence 8899999999999999 8888777776666 78886665432111 234566788999999987654
No 24
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.72 E-value=4.6e-19 Score=156.26 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=85.2
Q ss_pred HHHH-HHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCC-CC-CCcceeecCCCCCHHHHHHh-
Q 014091 225 VEAT-ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HH-PHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 225 ~~~~-~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~-~h-p~~~G~~~G~~~~~~~~~~~- 300 (431)
++++ +++|++||||||++|+ +..+++.+++++|+|+ ++||++|++|+|.||+ +| |++.+. |.. ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~--G~~--~~g~~~~~ 97 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYA--VLH--ELTQFLLD 97 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEE--CHH--HHHHHHHS
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCcccccc--ccH--HHHHHhhh
Confidence 5688 9999999999999999 9888899999999999 9999999999999999 99 844442 211 1334443
Q ss_pred ---------hhCCEEEEeCCccC--cccccccccCCCCcceEEEc
Q 014091 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQ 334 (431)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~I~Id 334 (431)
++||+||++|+||+ ++.++.|..|.|+.|+||||
T Consensus 98 ~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 98 PDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp TTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 89999999999997 44445666666788999986
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.59 E-value=1.2e-15 Score=152.52 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=126.5
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhc---CCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCC
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFT 98 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~G 98 (431)
++...|++.+++++.+.+.|++++||+||+...++++.|.+ ..++++|.++||.+|+.||.|+++..+. +|+.++|
T Consensus 18 ~~~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~ 96 (395)
T 1yd7_A 18 GEPDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSG 96 (395)
T ss_dssp SEEEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEET
T ss_pred CceEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCc
Confidence 33456899999999999999999999999999999998864 3469999999999999999999998777 5557899
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHH--Hh--hheeeEEEcCCcchHHHHHHH
Q 014091 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC--FQ--AITCSQAVVNNLGDAHELIDT 174 (431)
Q Consensus 99 pG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~k~~~~v~~~~~~~~~i~~ 174 (431)
||..+++.+|.++...++|+++++++.+....+.. ..+ +..|...+ .. ++.++.....+++++...+..
T Consensus 97 ~G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~-----~~~--~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~ 169 (395)
T 1yd7_A 97 PGFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQP-----TLP--AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIR 169 (395)
T ss_dssp THHHHHTTTCC----CCCCEEEEEEC---------------------------------CCCCEEECCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCC-----ccc--chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999998765532211 111 11232222 22 567899999999999999999
Q ss_pred HHHHhhhCCCcEEEEEccCCC
Q 014091 175 AISTALKESKPVYISISCNLP 195 (431)
Q Consensus 175 A~~~A~~~~GPv~l~iP~dv~ 195 (431)
||++|...+.||.+.+|.++.
T Consensus 170 A~~lA~~~~~PVi~~~~~~l~ 190 (395)
T 1yd7_A 170 AFNLSEKYRTPVILLTDAEVG 190 (395)
T ss_dssp HHHHHHHHTSEEEEEECHHHH
T ss_pred HHHHHHHHCCCEEEEcchhHh
Confidence 999999888999999998763
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.49 E-value=0.0012 Score=74.34 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=116.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhc-----CCC-----ceEEecCchhHHHHhhhhhhhhcC-ccEEE
Q 014091 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-----EPE-----LNLVGCCNELNAGYAADGYARSRG-VGACV 94 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-----~~~-----i~~v~~~hE~~A~~~A~gyar~tg-~gv~~ 94 (431)
.|++-++++... ..|++.++++|++...++.+.|.+ ..+ ..++..-+|.+|..||.|-+.. | ..++
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~a-GaR~~t- 82 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAA-GALTTT- 82 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHT-TCCEEE-
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHc-CChHhh-
Confidence 478999999986 779999999999999999988842 223 3899999999999999998865 6 5544
Q ss_pred EeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHH
Q 014091 95 VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELID 173 (431)
Q Consensus 95 ~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~ 173 (431)
.|++||..-+...|..+...++|+++...+++-...+- ...+ +..|. ++...+.|. ....+++++-..+.
T Consensus 83 ~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~gl-----si~~--~hsd~--~~ar~~G~~vl~pss~QEa~dl~~ 153 (1231)
T 2c42_A 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHAL-----SIFG--DHQDI--YAARQTGFAMLASSSVQEAHDMAL 153 (1231)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSB-----CCSC--CSHHH--HTTTTSSCEEEECCSHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCC-----cCCC--chhhH--HHHhcCCcEEEECCCHHHHHHHHH
Confidence 57999999888888766667899999999876432111 0122 23342 233334443 44567888889999
Q ss_pred HHHHHhhhCCCcEEEEEcc
Q 014091 174 TAISTALKESKPVYISISC 192 (431)
Q Consensus 174 ~A~~~A~~~~GPv~l~iP~ 192 (431)
.|++.|...+-||.+....
T Consensus 154 ~Af~lAek~~~PVi~~~Dg 172 (1231)
T 2c42_A 154 VAHLAAIESNVPFMHFFDG 172 (1231)
T ss_dssp HHHHHHHHHCCCEEEEEET
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 9999999888999887765
No 27
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.87 E-value=0.061 Score=51.98 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=94.1
Q ss_pred CCcccHHHHHHHHHHHcC--CCEEEecCCCch-----HHHHHhhhcCC-CceEEec-CchhHHHHhhhhhhhhcC-ccEE
Q 014091 24 ASVGTLGRHLARRLVEIG--AKDVFSVPGDFN-----LTLLDHLIAEP-ELNLVGC-CNELNAGYAADGYARSRG-VGAC 93 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~G--V~~vFgvpG~~~-----~~l~~al~~~~-~i~~v~~-~hE~~A~~~A~gyar~tg-~gv~ 93 (431)
...++..+.+.+.|.+.. -+.|+++..+.- ...++.+.+.- .-|++.+ ..|++++.+|.|+|.. | ..++
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~ 90 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMA-GLRPIC 90 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHT-TCEEEE
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHC-CCEEEE
Confidence 344566666665554432 245554433321 11122232211 2478888 5999999999999986 7 5666
Q ss_pred EEeCCcchHHHHHHHHHhhh---------cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcC
Q 014091 94 VVTFTVGGLSVLNAIAGAYS---------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVN 163 (431)
Q Consensus 94 ~~t~GpG~~n~~~gl~~A~~---------~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~ 163 (431)
-.+.+..+.-+.--|..+-. .++||+++... . ..+.+...|+ + ..+ .+++.+..+.. ...
T Consensus 91 ~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G--~~g~~G~tHs--~---~~e--a~l~~iP~l~V~~Ps 160 (341)
T 2ozl_B 91 EFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G--ASAGVAAQHS--Q---CFA--AWYGHCPGLKVVSPW 160 (341)
T ss_dssp ECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S--CCSSCCGGGC--C---CCH--HHHHTSTTCEEECCC
T ss_pred EeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c--CCCCCCcchh--h---HHH--HHhccCCCCEEEEeC
Confidence 55788887666666664332 79999998763 3 2232323331 2 234 67888766554 445
Q ss_pred CcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 164 NLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 164 ~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++.++...++.|++ .++||+|..|..+
T Consensus 161 d~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 161 NSEDAKGLIKSAIR----DNNPVVVLENELM 187 (341)
T ss_dssp SHHHHHHHHHHHHH----SSSCEEEEECHHH
T ss_pred CHHHHHHHHHHHHh----cCCCEEEEEChhh
Confidence 56667666666655 4799999999653
No 28
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=94.33 E-value=0.014 Score=49.48 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC---CCeEecCC-CcccCCCCCCCcceee--------cCCCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHFIGTY--------WGAVS 292 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~---~Pv~tt~~-gkg~~~~~hp~~~G~~--------~G~~~ 292 (431)
.++++++|..|++.+|+-|+|..-+.++..+.+|+++|. +-|=-... -.|-. |-.+-++ .-.+.
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRM----PGhmNVLLAEA~VPYd~v~E 88 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRM----PGHMNVLLAEANVPYDEVFE 88 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTS----TTHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccC----CCcceEEEEeeCCCHHHHhh
Confidence 467899999999999999999988778877777777664 33322111 11112 2112111 00122
Q ss_pred CHHHHHHhhhCCEEEEeCCc
Q 014091 293 SSFCGEIVESADAYVFVGPI 312 (431)
Q Consensus 293 ~~~~~~~~~~aD~vl~lG~~ 312 (431)
-+..|.-|.+.|++|+||+.
T Consensus 89 MdeIN~df~~tDv~lVIGAN 108 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGAN 108 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCC
T ss_pred HHHHhhhhhhcCEEEEeccc
Confidence 23667778899999999964
No 29
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=94.30 E-value=0.015 Score=49.40 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC---CCeEecCC-CcccCCCCCCCcceee--------cCCCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHFIGTY--------WGAVS 292 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~---~Pv~tt~~-gkg~~~~~hp~~~G~~--------~G~~~ 292 (431)
.++++++|..|++.+|+-|+|..-+.++..+.+|+++|. +-|=-... -.|-. |-.+-++ .-.+.
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRM----PGhMNVLLAEA~VPYd~v~E 87 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRM----PGQLNVLLAEAGVPYDIVLE 87 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSS----TTHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccC----CCcceEEEEEecCCHHHHHh
Confidence 457889999999999999999988788877777777764 33322111 11112 2112111 00112
Q ss_pred CHHHHHHhhhCCEEEEeCCcc
Q 014091 293 SSFCGEIVESADAYVFVGPIF 313 (431)
Q Consensus 293 ~~~~~~~~~~aD~vl~lG~~~ 313 (431)
-+..|.-|.+.|++|+||+.-
T Consensus 88 MdeIN~df~~tDv~lVIGAND 108 (184)
T 1d4o_A 88 MDEINHDFPDTDLVLVIGAND 108 (184)
T ss_dssp HHHHGGGGGGCSEEEEESCSG
T ss_pred HHHHhhhhhhcCEEEEecCCc
Confidence 236677788999999999753
No 30
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=94.09 E-value=0.014 Score=49.59 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHh---CCCeEecCC-CcccCCCCCCCcceee--------cCC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPS-GKGLVPEHHPHFIGTY--------WGA 290 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~---~~Pv~tt~~-gkg~~~~~hp~~~G~~--------~G~ 290 (431)
...++++++|..|++.+|+-|+|..-+.++-.+.+|+++| |+-|=-... -.|-.| -.+-++ .-.
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP----GhMNVLLAEA~VPYd~v 93 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLP----GHMNVLLAEAKVPYDIV 93 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSS----STHHHHHHHHTCCTTTE
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCC----CcceEEEEecCCCHHHH
Confidence 3457889999999999999999998777877777777665 443322111 112222 111111 001
Q ss_pred CCCHHHHHHhhhCCEEEEeCCc
Q 014091 291 VSSSFCGEIVESADAYVFVGPI 312 (431)
Q Consensus 291 ~~~~~~~~~~~~aD~vl~lG~~ 312 (431)
+.-+..|.-|.+.|++|+||+.
T Consensus 94 ~EMdeIN~df~~tDv~lVIGAN 115 (186)
T 2bru_C 94 LEMDEINDDFADTDTVLVIGAN 115 (186)
T ss_dssp EESCCCHHHHHHCSEEEECBCG
T ss_pred hhHHHHhcccccCCEEEEeccc
Confidence 1223567778899999999964
No 31
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=94.08 E-value=0.016 Score=50.28 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC---CCeEecCCCcccCCCCCCCcceee--------cCCCCCH
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPSGKGLVPEHHPHFIGTY--------WGAVSSS 294 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~---~Pv~tt~~gkg~~~~~hp~~~G~~--------~G~~~~~ 294 (431)
+.++++|..|++.+|+-|+|..-+.++..+.+|+++|. +-|=-... -+-.+-|-.+-++ .=.+.-+
T Consensus 36 ~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIH---PVAGRMPGhMNVLLAEA~VPYd~v~EMd 112 (207)
T 1djl_A 36 DNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIH---PVAGRMPGQLNVLLAEAGVPYDIVLEMD 112 (207)
T ss_dssp HHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEEC---TTCSSSTTHHHHHHHHTTCCGGGEEEHH
T ss_pred HHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeC---ccCCCCCCCCcEEEEEeCCCHHHHhhHH
Confidence 57889999999999999999988788877777777664 33322111 0111112112111 0011223
Q ss_pred HHHHHhhhCCEEEEeCCcc
Q 014091 295 FCGEIVESADAYVFVGPIF 313 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~ 313 (431)
..|.-+.+.|++|+||+.-
T Consensus 113 eIN~df~~tDv~lVIGAND 131 (207)
T 1djl_A 113 EINHDFPDTDLVLVIGAND 131 (207)
T ss_dssp HHGGGGGGCSEEEEESCCG
T ss_pred HHhhhhhhcCEEEEecccc
Confidence 6677788999999999653
No 32
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=93.92 E-value=0.016 Score=50.17 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhC---CCeEecCCCcccCCCCCCCcceee--------cCCCCC
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPSGKGLVPEHHPHFIGTY--------WGAVSS 293 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~---~Pv~tt~~gkg~~~~~hp~~~G~~--------~G~~~~ 293 (431)
.++++++|..|++.+|+-|+|..-+.++..+.+|+++|. +-|=-... -+-.+-|-.+-++ .=.+.-
T Consensus 36 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIH---PVAGRMPGhMNVLLAEA~VPYd~v~EM 112 (203)
T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIH---PVAGRMPGHMNVLLAEANVPYDEVFEL 112 (203)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEEC---TTCSSSTTHHHHHHHHTTCCGGGEEEH
T ss_pred HHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEec---ccccCCCCCccEEEEEecCCHHHHhhH
Confidence 456889999999999999999988788877777777664 33322111 0111112112111 001122
Q ss_pred HHHHHHhhhCCEEEEeCCc
Q 014091 294 SFCGEIVESADAYVFVGPI 312 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~ 312 (431)
+..|.-|.+.|++|+||+.
T Consensus 113 deIN~df~~tDv~lVIGAN 131 (203)
T 2fsv_C 113 EEINSSFQTADVAFVIGAN 131 (203)
T ss_dssp HHHGGGSTTCSEEEEESCC
T ss_pred HHHhhhhhhcCEEEEeccc
Confidence 3666777899999999964
No 33
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=93.50 E-value=0.3 Score=46.65 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=76.1
Q ss_pred eEEec-CchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHH--hh---h----cCCcEEEEeCCCCCcccCCCce
Q 014091 67 NLVGC-CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNRI 135 (431)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~--A~---~----~~~Pvl~I~g~~~~~~~~~~~~ 135 (431)
|++.+ ..|++++.+|.|+|.. | ..++-.+.++...-+.-.|.+ |+ . .++|++++.. ... .+.+ .
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~-g 126 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGG--GVRG-G 126 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECS--SSSC-G
T ss_pred cEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCC--CCCC-C
Confidence 67765 9999999999999987 7 566655788887555556643 32 2 7899998864 221 1222 2
Q ss_pred eeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 136 LHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
.||.. .| ..+++.+..+. ....++.++...+..|++ .++||+|.-|..+.
T Consensus 127 ~~hs~-----~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~p~~l~ 177 (324)
T 1umd_B 127 HHHSQ-----SP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR----DEDPVVFLEPKRLY 177 (324)
T ss_dssp GGSSC-----CC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH----CSSCEEEEEEGGGS
T ss_pred Cccch-----hH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEechHhc
Confidence 33321 13 37788776643 455667777777777764 57999998887764
No 34
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=92.52 E-value=0.1 Score=47.61 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccCC--CCcceEEEccCceeecCCC-ccccccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTVGNGP-SLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~I~Id~d~~~~~~~~-~~~~~d~~~~L~~L~~~l~ 363 (431)
.+.+.+++||++|++|+++..+...++.... .+.++|.||.++....... .....++.++|.+|.+.+.
T Consensus 160 ~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHHH
Confidence 5567788999999999998754433333222 3678999999987554111 1122378899999877653
No 35
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=92.50 E-value=0.38 Score=45.91 Aligned_cols=116 Identities=19% Similarity=0.096 Sum_probs=76.1
Q ss_pred ceEEecC-chhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHH--h---hh----cCCcEEEEeCCCCCcccCCCc
Q 014091 66 LNLVGCC-NELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG--A---YS----ENLPVICIVGGPNSNDYGTNR 134 (431)
Q Consensus 66 i~~v~~~-hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~--A---~~----~~~Pvl~I~g~~~~~~~~~~~ 134 (431)
-|++.+- .|++++.+|.|+|.. | ..++-.|+++.+.-+.-.|.+ | |. .++||+++.. ... .+.+
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~- 124 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG--GVHT- 124 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS--SSCC-
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC--CCCC-
Confidence 3777755 999999999999986 7 566655788887555556643 2 22 7999998853 211 1122
Q ss_pred eeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 135 ILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
..||.. .| ..+++.+..+. ....+++++...+..|++ .++||+|.-|..+..
T Consensus 125 g~~hs~-----~~-~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 125 PELHSD-----SL-EGLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp CTTSSC-----CC-HHHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEETTTSS
T ss_pred CCcccc-----cH-HHHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEechHhcC
Confidence 223221 12 37788876644 455566677777777664 579999999987743
No 36
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=92.36 E-value=0.84 Score=43.78 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=75.6
Q ss_pred eEEec-CchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHH-h----hh----cCCcEEEEeCCCCCcccCCCce
Q 014091 67 NLVGC-CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG-A----YS----ENLPVICIVGGPNSNDYGTNRI 135 (431)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~-A----~~----~~~Pvl~I~g~~~~~~~~~~~~ 135 (431)
|++.+ -.|++++.+|.|+|.. | ..++-.++++++.-+.-.|.+ + |. .+.||+++..... +.+..
T Consensus 53 r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g----~~~G~ 127 (338)
T 1qs0_B 53 RVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG----GIYGG 127 (338)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC----SSSCC
T ss_pred cEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC----CCCCc
Confidence 78886 7999999999999987 7 566655788887666666652 2 22 3599998863222 12223
Q ss_pred eeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 136 LHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
.||... ...+++.+-.+. ....++.++...+..|++ .++||+|..|..+.
T Consensus 128 th~s~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~----~~~Pv~i~~p~~l~ 178 (338)
T 1qs0_B 128 QTHSQS------PEAMFTQVCGLRTVMPSNPYDAKGLLIASIE----CDDPVIFLEPKRLY 178 (338)
T ss_dssp SSSSCC------CHHHHTTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGS
T ss_pred cccccc------HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----cCCcEEEEEchHhh
Confidence 444321 357777775544 345566677777766665 47999998886553
No 37
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=92.21 E-value=2.1 Score=44.58 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCCc-hHHHHHhhhc-CCCceEEec-CchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSVPGDF-NLTLLDHLIA-EPELNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgvpG~~-~~~l~~al~~-~~~i~~v~~-~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
++..+++-+.|.+.. -+.|+++-.+- ...+.+.+.+ .++ |++.+ ..|++++.+|.|.|.....-++..++++++
T Consensus 313 ~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl 391 (616)
T 3mos_A 313 IATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFF 391 (616)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGG
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHH
Confidence 334444444443331 24555544332 2223344433 233 77775 699999999999998754455666788988
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcchHHHHHHHHHHHhh
Q 014091 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGDAHELIDTAISTAL 180 (431)
Q Consensus 102 ~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~~~~~i~~A~~~A~ 180 (431)
.-+...|..+...+.|++++....... .+.+..-||. .....+++.+-..... ..++.++ ..+++.|.
T Consensus 392 ~~a~dqi~~~a~~~~~v~~v~~~~g~~-~G~dG~tH~~------~ed~a~l~~iP~l~V~~P~d~~e~----~~~l~~a~ 460 (616)
T 3mos_A 392 TRAFDQIRMAAISESNINLCGSHCGVS-IGEDGPSQMA------LEDLAMFRSVPTSTVFYPSDGVAT----EKAVELAA 460 (616)
T ss_dssp GGGHHHHHHHHHTTCCEEEEEESBSGG-GCTTCGGGCB------SSHHHHHHTSTTEEEECCCSHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCcc-ccCCCCcccC------HHHHHHhcCCCCCEEEecCCHHHH----HHHHHHHH
Confidence 888888888788899998875433221 2322223332 2246788888765433 3334344 44556666
Q ss_pred hCCCcEEEEEccC
Q 014091 181 KESKPVYISISCN 193 (431)
Q Consensus 181 ~~~GPv~l~iP~d 193 (431)
..+||++|.+|.+
T Consensus 461 ~~~gp~~ir~~r~ 473 (616)
T 3mos_A 461 NTKGICFIRTSRP 473 (616)
T ss_dssp TCCSEEEEECCSS
T ss_pred hcCCCEEEEEeCC
Confidence 6689999999875
No 38
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=92.01 E-value=0.25 Score=47.11 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred HHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 232 LNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 232 L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
|.+|+ .|+-.|+|....+..+.+++||+++|.-|-.|-. -.|.+|.+ +.+|- .|.. =..++-|.+
T Consensus 194 L~~A~-ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGq-TGk~---------V~P~lYiA~ 260 (315)
T 1efv_A 194 LTGAK-VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPND--MQVGQ-TGKI---------VAPELYIAV 260 (315)
T ss_dssp GGGCS-EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBST-TSBC---------CCCSEEEEE
T ss_pred cCCCC-EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHH--heecc-CCcc---------cCcceEEEe
Confidence 34554 4555677777666778999999999999988754 24777754 44554 3321 257999999
Q ss_pred CCccCcccccccccCCCCcceEEEccCceeec-CCCcccc-ccHHHHHHHHHHHhcc
Q 014091 310 GPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (431)
Q Consensus 310 G~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~-~~~~~~~-~d~~~~L~~L~~~l~~ 364 (431)
|-+=.---..+.. ....+|-||-|+..-= ....|.- .|+.+++.+|.+.++.
T Consensus 261 GISGAiQHlaGm~---~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 261 GISGAIQHLAGMK---DSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp SCCCCHHHHTTTT---TCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred cccCcHHHHhhcc---cCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence 9543211111221 2445788888875210 0111221 3999999999998853
No 39
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.2 Score=48.55 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=48.3
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCceeecCCCccccccHHHHHHHHHHHhcccc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNT 366 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~~~~ 366 (431)
.+.+.+++||++|++|+++..+...++.... .+.++|.||.++............++.++|..|.+.|...-
T Consensus 248 ~a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~~L~~~lgw~~ 320 (354)
T 2hjh_A 248 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWTI 320 (354)
T ss_dssp HHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHHHHHHHcCCCC
Confidence 3455678899999999999765544443323 36789999988864320111122378999999999887643
No 40
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=90.90 E-value=1.7 Score=45.73 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=90.5
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCCCch-HHH-----HHhhhcCCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEE
Q 014091 26 VGTLGRHLARRLVEIGA--KDVFSVPGDFN-LTL-----LDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVV 95 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~GV--~~vFgvpG~~~-~~l-----~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~ 95 (431)
.++.-+++.+.|.+..- ..+++.-.+-. ... ...+.+.-.=|++. -..|++++.+|.|+|...| ..++ .
T Consensus 354 ~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~ 432 (669)
T 2r8o_A 354 KIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYT-S 432 (669)
T ss_dssp CEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEE-E
T ss_pred cHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeEEE-e
Confidence 34556666666665532 33454432211 000 01233222346777 4599999999999998867 5666 4
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeE-EEcCCcchHHHHHHH
Q 014091 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDT 174 (431)
Q Consensus 96 t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~ 174 (431)
++.+-..-+...|..+-..+.||+++....... .+.+...|+ ...++.+++.+-... ....++.++ ..
T Consensus 433 tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq------~~edla~lr~iP~l~V~~Pad~~E~----~~ 501 (669)
T 2r8o_A 433 TFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQ------PVEQVASLRVTPNMSTWRPCDQVES----AV 501 (669)
T ss_dssp EEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTC------CSSHHHHHHTSTTCEEECCSSHHHH----HH
T ss_pred ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccC------CHHHHHHhcCCCCCEEEecCCHHHH----HH
Confidence 666766666677877778899999996432222 222222332 123467787775433 333344444 44
Q ss_pred HHHHhhhC-CCcEEEEEccC
Q 014091 175 AISTALKE-SKPVYISISCN 193 (431)
Q Consensus 175 A~~~A~~~-~GPv~l~iP~d 193 (431)
+++.|... .+||+|.+|..
T Consensus 502 ~l~~a~~~~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 502 AWKYGVERQDGPTALILSRQ 521 (669)
T ss_dssp HHHHHHHCSSSCEEEECCSS
T ss_pred HHHHHHHhCCCcEEEEeCCC
Confidence 55555554 69999999864
No 41
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=90.71 E-value=0.35 Score=46.14 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=71.7
Q ss_pred HhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeC
Q 014091 233 NKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310 (431)
Q Consensus 233 ~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG 310 (431)
.+|+ .|+-.|+|....+..+.+++||+++|.-|-.|-. -.|.+|.+ +.+|- .|. .+.-|++-|.+|
T Consensus 200 ~~A~-ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGq-TGk--------~V~P~~lYiA~G 267 (320)
T 1o97_D 200 TTVD-FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKS--RQVGQ-SGK--------VVGSCKLYVAMG 267 (320)
T ss_dssp SCSS-EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBST-TSB--------CCTTCSEEEEES
T ss_pred CCCC-EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEeec-Cce--------EecccceEEEEe
Confidence 4443 3555677777666789999999999999988754 24777754 44554 332 345569999999
Q ss_pred CccCcccccccccCCCCcceEEEccCceeec-CCCcccc-ccHHHHHHHHHHHhc
Q 014091 311 PIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLR 363 (431)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~~-~~~~~~~-~d~~~~L~~L~~~l~ 363 (431)
-+=.---..+.. ....+|-||-|+..-= ....|.- .|+.+++.+|.+.++
T Consensus 268 ISGAiQHlaGm~---~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 268 ISGSIQHMAGMK---HVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp CCCCHHHHHHHT---TCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred ccCcHHHHhhcc---cCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 543211111221 2445788888875210 0111221 389999999998874
No 42
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=90.67 E-value=1.3 Score=46.45 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=75.0
Q ss_pred eEEec-CchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVGC-CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|++.+ .-|++++.+|.|.|...| ..++- |..+-..-+...|..+-..+.||+++.....-. .+.+...|+.
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~THq~----- 476 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG-LGEDGPTHQP----- 476 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCC-----
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCCcCC-----
Confidence 67775 899999999999998767 55555 366666666677777777899999985322111 2322233321
Q ss_pred hHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhh-CCCcEEEEEccC
Q 014091 145 FTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~d 193 (431)
.....+++.+-..... .|.+..+ +..+++.|.. .++||+|-+|..
T Consensus 477 -~ed~a~lr~iPnl~V~--~Pad~~e-~~~~l~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 477 -IEHVPSLRLIPNLSVW--RPADTIE-TMIAWKEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp -SSHHHHHHTSTTCEEE--CCCSHHH-HHHHHHHHHHCSSCCEEEECCSS
T ss_pred -HHHHHHHhcCCCcEEE--eeCCHHH-HHHHHHHHHHhCCCCEEEEccCc
Confidence 2347888887654332 2333322 3566667767 589999998853
No 43
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=90.66 E-value=1.7 Score=45.37 Aligned_cols=152 Identities=12% Similarity=0.149 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHHHcC--CCEEEec----CCC-chHHHHHhhhcCCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEe
Q 014091 26 VGTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVT 96 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~G--V~~vFgv----pG~-~~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (431)
.++..+.+.+.|.+.. -+.|+.+ +++ ....|.+.+ + =|++. ...|++++.+|.|.|.. | ..++-+
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~-~r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 391 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---P-DRYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI- 391 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---T-TTEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---C-CceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-
Confidence 3566666666555442 2446655 443 333444433 2 37888 45999999999999986 7 555554
Q ss_pred CCcchHHHHHH-HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHH
Q 014091 97 FTVGGLSVLNA-IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDT 174 (431)
Q Consensus 97 ~GpG~~n~~~g-l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~ 174 (431)
+++.+.-+.-- +..+-..++||+++...... .+.+...|+. . ....+++.+-.+.. ...++.++...+..
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~-----~-~d~~~~~~iP~l~v~~P~d~~e~~~~l~~ 463 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQG-----A-FDLSYLRCIPEMVIMTPSDENECRQMLYT 463 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCB-----C-SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCc-----h-HHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 77776544433 34456689999998844332 2322234432 2 23577887755443 44455566555555
Q ss_pred HHHHhhhCCCcEEEEEccCC
Q 014091 175 AISTALKESKPVYISISCNL 194 (431)
Q Consensus 175 A~~~A~~~~GPv~l~iP~dv 194 (431)
|++.+ ++||+|.+|...
T Consensus 464 a~~~~---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 464 GYHYN---DGPSAVRYPRGN 480 (621)
T ss_dssp HHHCC---SSCEEEECCSSB
T ss_pred HHHcC---CCCEEEEeCCCC
Confidence 55432 799999999764
No 44
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=90.63 E-value=0.56 Score=45.13 Aligned_cols=154 Identities=14% Similarity=0.022 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHHHcC--CCEEEecCCCch----HHHHHhhhcCC-CceEEecC-chhHHHHhhhhhhhhcC-ccEEEEeC
Q 014091 27 GTLGRHLARRLVEIG--AKDVFSVPGDFN----LTLLDHLIAEP-ELNLVGCC-NELNAGYAADGYARSRG-VGACVVTF 97 (431)
Q Consensus 27 ~~~a~~l~~~L~~~G--V~~vFgvpG~~~----~~l~~al~~~~-~i~~v~~~-hE~~A~~~A~gyar~tg-~gv~~~t~ 97 (431)
++..+++.+.|.+.. -+.|+++..+.. ....+.+.+.- .-|++.+- .|++++.+|.|+|.. | ..++-.|+
T Consensus 21 ~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf 99 (342)
T 2bfd_B 21 MNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQF 99 (342)
T ss_dssp ECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecc
Confidence 556666666555542 234444432211 11122222211 23788875 999999999999987 7 66665688
Q ss_pred CcchHHHHHHHHH-h----hh----cCC-cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheee-EEEcCCcc
Q 014091 98 TVGGLSVLNAIAG-A----YS----ENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLG 166 (431)
Q Consensus 98 GpG~~n~~~gl~~-A----~~----~~~-Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~ 166 (431)
++++.-+.-.|.+ + +. -++ ||+++...... . +...||.. .| ..+++.+-.+ .....+++
T Consensus 100 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~---~-~G~th~~~-----~d-~~~l~~iP~l~V~~Psd~~ 169 (342)
T 2bfd_B 100 ADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV---G-HGALYHSQ-----SP-EAFFAHCPGIKVVIPRSPF 169 (342)
T ss_dssp GGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC---S-SCGGGSSC-----CC-HHHHHTSTTCEEECCSSHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC---C-CCcchhhH-----hH-HHHHhcCCCcEEEeeCCHH
Confidence 9987656565542 2 21 134 99998553221 2 22345433 12 4667777553 34555666
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 167 DAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
++...+..|++ .++||+|..|..+.
T Consensus 170 e~~~~l~~a~~----~~~Pv~i~~p~~l~ 194 (342)
T 2bfd_B 170 QAKGLLLSCIE----DKNPCIFFEPKILY 194 (342)
T ss_dssp HHHHHHHHHHH----SSSCEEEEEEGGGT
T ss_pred HHHHHHHHHHh----cCCcEEEEecchhc
Confidence 77777776665 47999999887664
No 45
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.39 Score=48.12 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=47.9
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC-CCCcceEEEccCceeecCCCccccccHHHHHHHHHHHhcccc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNT 366 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~~~~ 366 (431)
.+.+.+++||++|++|+++.-+...++-.. ..+.++|.||.++............+..+++..|.+.|.+.-
T Consensus 386 ~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~~L~~~LGw~i 458 (492)
T 4iao_A 386 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWTI 458 (492)
T ss_dssp HHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHHHHHHHhCCCC
Confidence 344567899999999999976554444322 245678999988863220111112378999999999987653
No 46
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=89.48 E-value=0.44 Score=46.44 Aligned_cols=113 Identities=18% Similarity=0.066 Sum_probs=68.1
Q ss_pred HHHhhhhhhhhc---C-ccEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHH
Q 014091 77 AGYAADGYARSR---G-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL 149 (431)
Q Consensus 77 A~~~A~gyar~t---g-~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (431)
..-+|.|.++.. + -.++++..|=|+++. .-++..|...+.|+|+|.-...... .. ....... ..|..
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi-~~--~~~~~~~---~~d~~ 220 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI-ST--PVEKQTV---AKTLA 220 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TE--EGGGTCS---CSCSG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccc-ee--ccccccC---CCCHH
Confidence 333445555432 3 345555568888862 2356678889999999986543111 10 0111111 11344
Q ss_pred HHHhhheeeEEEcC--CcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 150 ~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
.+++.+--...+|+ +++++.+.+++|+..+....||+.|++-.+-.
T Consensus 221 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~ 268 (368)
T 1w85_A 221 QKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRY 268 (368)
T ss_dssp GGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCS
T ss_pred HHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 55666544455665 67888888888888887788999999976653
No 47
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=89.35 E-value=0.36 Score=46.42 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhcc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLRK 364 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~~ 364 (431)
.+.+.+++||++|++|+++.-+...++... ..+.++|.||.++...... ......++.++|..|.+.|..
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~ 271 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGL 271 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCC
Confidence 345567899999999999976554444322 2467899999887644310 111123789999999988764
No 48
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=89.34 E-value=1.6 Score=45.68 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=73.5
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|++. .--|++++.+|.|.|...| ..++-+ ..+=..-+...|..+-..+.||+++....... .+.+...||.
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~----- 455 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQP----- 455 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSC-----
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCC-----
Confidence 4554 5689999999999998867 555543 45555556667766667899999985322221 3333334432
Q ss_pred hHHHHHHHhhheeeEE-EcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 145 FTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...+.+++.+-.... ...++.++.. +++.|...++||+|-+|..-
T Consensus 456 -~ed~a~lr~iP~l~V~~P~d~~e~~~----~l~~A~~~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 456 -IEQLSTFRAMPNFLTFRPADGVENVK----AWQIALNADIPSAFVLSRQK 501 (632)
T ss_dssp -SSHHHHHHHSSSCEEECCSSHHHHHH----HHHHHHHCSSCEEEECCSSC
T ss_pred -HhHHHHHhcCCCCEEEecCCHHHHHH----HHHHHHhCCCCEEEEEcCCC
Confidence 234788888876543 3344444444 44555556799999998743
No 49
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=89.32 E-value=0.26 Score=45.16 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=44.9
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~ 363 (431)
.+.+.+++||++|++|+++.-+...++... .++.++|.||.++...... ......++.++|..|.+.|.
T Consensus 173 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 173 EAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 345667899999999998765443333211 1367899999988754311 11122378999999987664
No 50
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=89.19 E-value=1.2 Score=46.77 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=72.7
Q ss_pred ceEEec-CchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 66 i~~v~~-~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
=|++.+ ..|++++.+|.|+|...|.=.++.|+.+...=+..+|..+-..+.||+++....... .+.+...|+
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g-~G~dG~tHq------ 469 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA-LGEDGPTHQ------ 469 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCcCccc------
Confidence 467775 499999999999998765333444556666555566777777899999885222211 232222332
Q ss_pred hHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
...++.+++.+-.+. ....++.++...+ +.|... .+||+|.+|..
T Consensus 470 ~~edla~lr~iP~l~V~~Pad~~E~~~~l----~~A~~~~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 470 PVEHLMSLRAMPNLFVIRPADAYETFYAW----LVALRRKEGPTALVLTRQ 516 (651)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHH----HHHHHCCSSCEEEECCSS
T ss_pred cHHHHHHhcCCCCcEEEecCCHHHHHHHH----HHHHHcCCCCEEEEEeCC
Confidence 123467788775543 3444444555444 444444 69999999865
No 51
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=89.17 E-value=0.99 Score=43.91 Aligned_cols=115 Identities=16% Similarity=0.024 Sum_probs=69.3
Q ss_pred ceEEecC-chhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHH-hhh--------cCCcEEEEeCCCCCcccCCCc
Q 014091 66 LNLVGCC-NELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAG-AYS--------ENLPVICIVGGPNSNDYGTNR 134 (431)
Q Consensus 66 i~~v~~~-hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~-A~~--------~~~Pvl~I~g~~~~~~~~~~~ 134 (431)
-|++.+- .|++++.+|.|+|.. | ..++-.|.++.+.-+.--|.. +-. -++||+++...... .+ +.
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g-~g 173 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TR-GG 173 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CC-CC
Confidence 4777755 999999999999986 7 566655788876545555543 211 28999987653331 22 22
Q ss_pred eeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCCC
Q 014091 135 ILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (431)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv~ 195 (431)
.||. ..+ ..+++.+..+.. ...++.++...++.|++ .++||+|..|..+.
T Consensus 174 -~~hs-----~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~----~~~Pv~i~~p~~l~ 224 (369)
T 1ik6_A 174 -LYHS-----NSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR----GDDPVVFLEPKILY 224 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGS
T ss_pred -cccc-----ccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEEehhhh
Confidence 2331 123 478888766554 44556666666666664 57999999887764
No 52
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=88.77 E-value=0.35 Score=44.42 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~ 363 (431)
.+.+.+++||++|++|+++.-+...++... .++.++|.||.++...... ......++.++|..|.+.+.
T Consensus 170 ~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 170 RAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH
Confidence 345667889999999998765443332221 2477899999988754311 11112378888888877653
No 53
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=88.75 E-value=0.44 Score=45.26 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhccc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLRKN 365 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~~~ 365 (431)
.+.+.+++||++|++|+++.-+...++... ..+.++|.||.++...... ......++.++|..|.+.|...
T Consensus 199 ~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~ 272 (318)
T 3k35_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLE 272 (318)
T ss_dssp HHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCC
Confidence 345667899999999999976554444221 2467899999887644311 1111237899999999888753
No 54
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=88.69 E-value=0.55 Score=44.49 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=69.4
Q ss_pred HhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCC--CcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeC
Q 014091 233 NKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310 (431)
Q Consensus 233 ~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG 310 (431)
.+|+ .|+-.|+|....+..+.+++||+++|.-|-.|-. -.|.+|.+ +.+|- .|.. =..++-|.+|
T Consensus 190 ~~A~-ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGq-TGk~---------V~P~lYiA~G 256 (307)
T 1efp_A 190 TSAR-RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPND--WQVGQ-TGKV---------VAPELYVAVG 256 (307)
T ss_dssp TTCS-EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSS-SSBC---------CCCSEEEEES
T ss_pred CCCC-EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEecc-CCcc---------cCCceEEEEe
Confidence 4443 3555667777666778999999999999988754 24777754 44554 3431 2579999999
Q ss_pred CccCcccccccccCCCCcceEEEccCceee--cCCCcccc-ccHHHHHHHHHHHh
Q 014091 311 PIFNDYSSVGYSLLIKKEKAIIVQPHRVTV--GNGPSLGW-VFMADFLSALAKKL 362 (431)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~I~Id~d~~~~--~~~~~~~~-~d~~~~L~~L~~~l 362 (431)
-+=.---..+.. ....+|-||-|+..- . ...|.- .|+.+++.+|.+.+
T Consensus 257 ISGAiQHlaGm~---~s~~IVAIN~D~~ApIF~-~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 257 ISGAIQHLAGMK---DSKVIVAINKDEEAPIFQ-IADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCCCHHHHTTTT---TCSEEEEEESCTTCGGGG-TCSEEEESCHHHHHHHHHHTC
T ss_pred ccCcHHHHhhhc---cCCEEEEEeCCCCCCccc-ccCeEEeeeHHHHHHHHHhhC
Confidence 543211111221 244578888887521 1 111221 28999999998753
No 55
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=88.42 E-value=1.7 Score=45.40 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=90.2
Q ss_pred cccHHHHHHHHHHHcC--CCEEEec----CCC-chHHHHHhhhcCCCceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEe
Q 014091 26 VGTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRG-VGACVVT 96 (431)
Q Consensus 26 ~~~~a~~l~~~L~~~G--V~~vFgv----pG~-~~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t 96 (431)
.++..+.+.+.|.+.. -+.|+.+ +++ ....|.+.+ + =|++. .-.|++++.+|.|.|.. | ..++.+
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~-~r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---P-HRYLDVGIAEEVAVTTAAGMALQ-GMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---G-GGEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---C-cceEeccccHHHHHHHHHHHHHc-CCEEEEEe-
Confidence 3556666666554432 2446655 443 333444433 2 36787 45999999999999986 7 555544
Q ss_pred CCcchHHHHHH-HHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcchHHHHHHH
Q 014091 97 FTVGGLSVLNA-IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDT 174 (431)
Q Consensus 97 ~GpG~~n~~~g-l~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~ 174 (431)
+.+.+.-+.-- +..+-..+.||+++...... .+.+...|+. . .+..+++.+..+.. ...++.++...+..
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~-----~-~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNG-----V-FDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCB-----C-SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCc-----c-HHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 66665433323 34456689999998744332 2222223432 1 24688888766553 44455556555555
Q ss_pred HHHHhhhCCCcEEEEEccCC
Q 014091 175 AISTALKESKPVYISISCNL 194 (431)
Q Consensus 175 A~~~A~~~~GPv~l~iP~dv 194 (431)
|++ .++||+|.+|...
T Consensus 467 a~~----~~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 467 AQT----HDGPFAIRYPRGN 482 (629)
T ss_dssp HHH----SSSCEEEECCSSB
T ss_pred HHh----CCCCEEEEecCCC
Confidence 554 4799999999754
No 56
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=88.38 E-value=0.33 Score=45.58 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHhCCCeEec--CCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCCcceEEEccC
Q 014091 259 ADATGYPIAIM--PSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPH 336 (431)
Q Consensus 259 ae~~~~Pv~tt--~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d 336 (431)
+-+.++|++-. ..-.|-+|+-+... +-++.+.++.++.+|+||.+.+.+-+..+++... ...+++.||++
T Consensus 234 cvk~~VPfVLAGSIRDDGPLPdvitdv------~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~P--s~v~~~cVDIn 305 (345)
T 3c2q_A 234 CIKNNIPYVLAGSIRDDGPIPDVITDS------MVAQDKMRTTVMDKKMVIMLSTLLHSVATGNLMP--SYIKTVCVDIQ 305 (345)
T ss_dssp HHHTTCCEEEECCTTCSSCCTTCBCBH------HHHHHHHHHHHTTCSEEEEESCHHHHHHHHTTCC--TTSEEEEEESC
T ss_pred HHhCCCCEEEEeeccCCCCCCcccccH------HHHHHHHHHHhccCCchHHHHHHHHHHHhcccCc--ccceEEEEECC
Confidence 44689998874 33445555443321 1234566667889999999999997777766542 35679999999
Q ss_pred ceeec----CCCccc--c-ccHHHHHHHHHHHhcc
Q 014091 337 RVTVG----NGPSLG--W-VFMADFLSALAKKLRK 364 (431)
Q Consensus 337 ~~~~~----~~~~~~--~-~d~~~~L~~L~~~l~~ 364 (431)
+.... ++.... - .|+.+||..|.+.|..
T Consensus 306 p~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~~ 340 (345)
T 3c2q_A 306 PSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELER 340 (345)
T ss_dssp HHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccCceeEEEEEecHHHHHHHHHHHHHH
Confidence 87664 122211 1 2899999999887763
No 57
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=88.16 E-value=0.32 Score=44.77 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceeecCC-CccccccHHHHHHHHHHHhc
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~~~l~ 363 (431)
.+.+.+++||++|++|+++.-+...++... .++.++|.||.++...... ......++.++|.+|.+.+.
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 345667899999999998765443333211 1367899999988754311 11112378899998877654
No 58
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=87.84 E-value=0.39 Score=44.76 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=42.3
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc--CCCCcceEEEccCceeecCC-CccccccHHHHHHHHH
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALA 359 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~Id~d~~~~~~~-~~~~~~d~~~~L~~L~ 359 (431)
.+.+.+++||++|++|+++.-+...++.. ..++.++|.||.++...... ......++.++|.+|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 44566789999999999997554333322 22578899999988754311 1111237888888764
No 59
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=87.61 E-value=0.83 Score=42.71 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=46.5
Q ss_pred HHHhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCcee-ec-CCCc---cccccHHHHHHHHHHHhcccc
Q 014091 297 GEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-VG-NGPS---LGWVFMADFLSALAKKLRKNT 366 (431)
Q Consensus 297 ~~~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~-~~-~~~~---~~~~d~~~~L~~L~~~l~~~~ 366 (431)
.+.+.+||++|++|+++.-+...++.... .+.++|.||.++.. +. .... ...-|+.+.+..|.+.|.++.
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw~~ 267 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGWTE 267 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCCHH
Confidence 45678999999999999765544444333 35678999988752 10 0111 111278899999999887654
No 60
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=86.94 E-value=0.46 Score=44.61 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred HhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCcee-e--cC--CCccccccHHHHHHHHHHHhccc
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-V--GN--GPSLGWVFMADFLSALAKKLRKN 365 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~-~--~~--~~~~~~~d~~~~L~~L~~~l~~~ 365 (431)
.+.+||++|++|+++..+...++.... ++.++|.||.++.. + .. .......|+.++|..|.+.|...
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 367899999999999755433333323 37789999988763 1 10 11222348899999998877643
No 61
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=86.85 E-value=1 Score=44.43 Aligned_cols=99 Identities=15% Similarity=-0.051 Sum_probs=61.3
Q ss_pred cEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Cc
Q 014091 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (431)
Q Consensus 91 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (431)
.++++..|=|+++. .-++..|...++|+|+|.-..... ... ......+ ...|....++.+--...+|+ ++
T Consensus 204 ~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~--~~~~~~~--~~~d~a~~a~a~G~~~~~VdG~D~ 278 (407)
T 1qs0_A 204 KIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-IST--FQAIAGG--ESTTFAGRGVGCGIASLRVDGNDF 278 (407)
T ss_dssp CCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTE--EGGGGTT--TTCCSTHHHHHTTCEEEEEETTCH
T ss_pred CEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eee--ccccccC--CCCCHHHHHHHcCCeEEEEcCCCH
Confidence 44555567777752 356777888999988888543211 111 1111110 01244455666655555665 56
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+++.+.+++|+..+....||+.|++-.+-
T Consensus 279 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 279 VAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 67888888888888778899999987654
No 62
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=86.28 E-value=1.9 Score=41.75 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=56.6
Q ss_pred cEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Cc
Q 014091 91 GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (431)
Q Consensus 91 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (431)
.++++..|=|+++. .-+|..|...+.|+|+|+-..... ... .........++.. +.+---..+|+ ++
T Consensus 163 ~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t--~~~~~~~~~~~~~-----ra~g~p~~~VdG~D~ 234 (365)
T 2ozl_A 163 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGT--SVERAAASTDYYK-----RGDFIPGLRVDGMDI 234 (365)
T ss_dssp CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTE--EHHHHCSCCCGGG-----TTTTSCEEEEETTCH
T ss_pred ceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCC--CcccccCCCCHHH-----HhCCCCEEEEeCCCH
Confidence 44555567777762 336778888899999998433111 100 0000001112211 12212223454 68
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+++.+.+++|+..+....||+.|++-..=
T Consensus 235 ~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 235 LCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 88888999998888888999999998664
No 63
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.89 E-value=0.74 Score=47.60 Aligned_cols=111 Identities=9% Similarity=-0.053 Sum_probs=61.8
Q ss_pred HHhhhhhhhhcCccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC-------ceeeeecCCCChHHHH
Q 014091 78 GYAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN-------RILHHTIGLPDFTQEL 149 (431)
Q Consensus 78 ~~~A~gyar~tg~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~-------~~~~~~~~~~~~~d~~ 149 (431)
.-+|.|.+...++.+|++ |=|... .+..|..|...+.|+++|.-.......-+. ......+++....|+.
T Consensus 442 l~~AiGaa~~~~~vv~i~--GDGsf~~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 519 (578)
T 3lq1_A 442 VSSALGASVVFQPMFLLI--GDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFR 519 (578)
T ss_dssp HHHHHHHTTTSSSEEEEE--EHHHHHHTGGGGHHHHHTTCCEEEEEECCC-------------------------CCCTH
T ss_pred HHHHHHHhcCCCCEEEEE--chHHHHhhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHH
Confidence 445666654322555554 555553 367788899999999988866532211110 0000011111112567
Q ss_pred HHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+++.+--...++++++++. +|++.|....||+.|++..|-
T Consensus 520 ~~a~a~G~~~~~v~~~~el~----~al~~a~~~~gp~liev~~~~ 560 (578)
T 3lq1_A 520 FAAAFYDADYHEAKSVDELE----EAIDKASYHKGLDIIEVKTNR 560 (578)
T ss_dssp HHHHHTTCEEEECCSHHHHH----HHHHHHTTSSSEEEEEEC---
T ss_pred HHHHHcCCceEecCCHHHHH----HHHHHHHhCCCCEEEEEECCc
Confidence 78888876778888876654 555555566899999998774
No 64
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=85.24 E-value=2.3 Score=44.80 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=72.1
Q ss_pred ceEEe-cCchhHHHHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCC
Q 014091 66 LNLVG-CCNELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (431)
Q Consensus 66 i~~v~-~~hE~~A~~~A~gyar~tg-~-gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~ 142 (431)
=|++. ..-|++++.+|.|.|...| . .++ .+..+-..-+..+|..+-..+.||+++....... .+.+...|+
T Consensus 409 ~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g-~G~dG~tHq---- 482 (680)
T 1gpu_A 409 GRYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG-VGEDGPTHQ---- 482 (680)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC----
T ss_pred CceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCccC----
Confidence 35555 6789999999999998866 5 666 4555554445566766677899999986321111 232222332
Q ss_pred CChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 143 PDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 143 ~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
...++.+++.+-... ....++.++ ..+++.|... .+||+|-+|..
T Consensus 483 --~~edla~lr~iP~l~V~~Pad~~e~----~~~l~~A~~~~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 483 --PIETLAHFRSLPNIQVWRPADGNEV----SAAYKNSLESKHTPSIIALSRQ 529 (680)
T ss_dssp --CSSHHHHHHTSSSCEEECCCSHHHH----HHHHHHHHHCSSCCEEEECCSS
T ss_pred --CHHHHHHhcCCCCCEEEecCCHHHH----HHHHHHHHHhCCCcEEEEecCC
Confidence 123578888775543 233334444 4455556555 79999999874
No 65
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=85.07 E-value=0.94 Score=43.87 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=42.3
Q ss_pred HhhhCCEEEEeCCccCcccccccccCC-CCcceEEEccCcee-e--c-C-CCccccccHHHHHHHHHHHhcc
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVT-V--G-N-GPSLGWVFMADFLSALAKKLRK 364 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~I~Id~d~~~-~--~-~-~~~~~~~d~~~~L~~L~~~l~~ 364 (431)
.+..||++|++|+++..+...++.... .+.++|.||.++.. + . . .......++.++|..|.+.|..
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~ 287 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 287 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC
Confidence 356899999999999765544443333 37789999988763 1 1 0 1122233788999999887654
No 66
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=84.95 E-value=7.8 Score=39.48 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=84.8
Q ss_pred HHHHHHHHc-CCCEEEecC-CCchHHHHHhhhcCCCceEEecCch---hHHHHhhhhhhhhc-C-ccEEEEeCCcchH-H
Q 014091 32 HLARRLVEI-GAKDVFSVP-GDFNLTLLDHLIAEPELNLVGCCNE---LNAGYAADGYARSR-G-VGACVVTFTVGGL-S 103 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vFgvp-G~~~~~l~~al~~~~~i~~v~~~hE---~~A~~~A~gyar~t-g-~gv~~~t~GpG~~-n 103 (431)
.+++.|.+. .=+.++..- |.+.......+.-...-+++....- ..+.-+|.|.+... + +.+|++ |=|.. -
T Consensus 361 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~--GDGs~~~ 438 (549)
T 3eya_A 361 YLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMC--GDGGFSM 438 (549)
T ss_dssp HHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEE--EHHHHHH
T ss_pred HHHHHHHhhCCCCCEEEEcCcHHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEE--ccchhhc
Confidence 344444443 334555443 3332223333332223556654332 23455666766655 3 445444 55554 2
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCC----ceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHh
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTN----RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A 179 (431)
.+..|..|...+.|+++|.-+......-+. ........+....|...+++.+--...++++++++.+.+++|+
T Consensus 439 ~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~--- 515 (549)
T 3eya_A 439 LMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAF--- 515 (549)
T ss_dssp TGGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHH---
T ss_pred cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHH---
Confidence 468889999999998888765432211000 0000000001113667778887666778888888766666554
Q ss_pred hhCCCcEEEEEccCC
Q 014091 180 LKESKPVYISISCNL 194 (431)
Q Consensus 180 ~~~~GPv~l~iP~dv 194 (431)
..+||+.|++..|-
T Consensus 516 -~~~gp~liev~~~~ 529 (549)
T 3eya_A 516 -SIDGPVLVDVVVAK 529 (549)
T ss_dssp -HSSSCEEEEEEBCC
T ss_pred -hCCCCEEEEEEecc
Confidence 45799999999874
No 67
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=84.64 E-value=1.5 Score=43.21 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=58.5
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Cc
Q 014091 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (431)
Q Consensus 91 gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (431)
.++++..|=|+++ ..-++..|...++|+|+|.-...... .. ....... ..|....++.+--...+|+ ++
T Consensus 185 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i-~~--~~~~~~~---~~d~~~~a~a~G~~~~~VdG~D~ 258 (400)
T 2bfd_A 185 RVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAI-ST--PTSEQYR---GDGIAARGPGYGIMSIRVDGNDV 258 (400)
T ss_dssp CCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TE--EGGGTCS---SSTTGGGTGGGTCEEEEEETTCH
T ss_pred CeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceee-ee--cccccCC---CCCHHHHHHHcCCcEEEEeCCCH
Confidence 3344445667664 22566777778899999986542111 10 0110111 1234455665544444554 56
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+++.+.+++|+..+....||+.|++-..-
T Consensus 259 ~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 259 FAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 78888888888888777899999987643
No 68
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=84.23 E-value=1.1 Score=42.66 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=46.5
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccCCC-CcceEEEccCceeecCCC------------------ccc----cccH
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTVGNGP------------------SLG----WVFM 351 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~I~Id~d~~~~~~~~------------------~~~----~~d~ 351 (431)
.+.+.+++||++|++|+++..+...++....+ +...|.||.++.... .. ... ..|+
T Consensus 213 ~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~ 291 (323)
T 1j8f_A 213 CMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQS-DPFLGMIMGLGGGMDFDSKKAYRDVAWLGEC 291 (323)
T ss_dssp HHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCC-CHHHHHHHHHHTCCCSSSTTCCSEEEEESCH
T ss_pred HHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCC-cccccccccccccccccccccceeEEEeCCH
Confidence 34567789999999999997654334433333 456678888776442 11 011 2388
Q ss_pred HHHHHHHHHHhcccc
Q 014091 352 ADFLSALAKKLRKNT 366 (431)
Q Consensus 352 ~~~L~~L~~~l~~~~ 366 (431)
.++|..|.+.|....
T Consensus 292 ~~~l~~L~~~lgw~~ 306 (323)
T 1j8f_A 292 DQGCLALAELLGWKK 306 (323)
T ss_dssp HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCch
Confidence 999999988887543
No 69
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=83.85 E-value=1.5 Score=45.05 Aligned_cols=123 Identities=16% Similarity=0.069 Sum_probs=70.5
Q ss_pred CceEEecCchhHH---HHhhhhhhhhcC-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC-----c
Q 014091 65 ELNLVGCCNELNA---GYAADGYARSRG-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN-----R 134 (431)
Q Consensus 65 ~i~~v~~~hE~~A---~~~A~gyar~tg-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~-----~ 134 (431)
+.+++..+--.+. .-+|.|.+...+ +.+|++ |=|+. -.++.|..|...+.|+++|.-........+. .
T Consensus 406 ~~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~--GDGsf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~ 483 (556)
T 3hww_A 406 GYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIV--GDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQS 483 (556)
T ss_dssp TCCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEE--EHHHHHHTGGGHHHHTTCSSCEEEEEEESCC------------
T ss_pred CceEEecCcccccccHHHHHHHHHhcCCCcEEEEE--ccHHhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcch
Confidence 4566654422111 345666666555 555554 55554 3467888899999999988865443111000 0
Q ss_pred eeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 135 ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.....+......|...+++.+--...++++++++ ++|++.+....||+.|++..|
T Consensus 484 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~al~~a~~~~gp~liev~~~ 538 (556)
T 3hww_A 484 ERERFYLMPQNVHFEHAAAMFELKYHRPQNWQEL----ETAFADAWRTPTTTVIEMVVN 538 (556)
T ss_dssp -----CCCCCCCCSHHHHHHTTCEEECCSSHHHH----HHHHHHHTTSSSEEEEEEECC
T ss_pred hHHHhccCCCCCCHHHHHHHcCCcEEecCCHHHH----HHHHHHHHhCCCCEEEEEECC
Confidence 0000111111235677888887667788877655 555566666789999999866
No 70
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=83.80 E-value=5.2 Score=42.09 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=72.7
Q ss_pred ceEEe-cCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCC
Q 014091 66 LNLVG-CCNELNAGYAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (431)
Q Consensus 66 i~~v~-~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~ 142 (431)
=|++. ...|++++.+|.|+|... | ..++. ++.+...-+..+|..+-..+.||+++....... .+.+...|+
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq---- 487 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQ---- 487 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC----
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcC----
Confidence 35666 458999999999999876 4 34444 466776666677888888899999987321111 222222332
Q ss_pred CChHHHHHHHhhheeeE-EEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 143 PDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 143 ~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
...++.+++.+-... ....++.++ ..+++.|... .+||+|-+|..
T Consensus 488 --~~edla~lr~iP~l~V~~Pad~~e~----~~~l~~a~~~~~~Pv~i~~~r~ 534 (675)
T 1itz_A 488 --PIEHLVSFRAMPNILMLRPADGNET----AGAYKVAVLNRKRPSILALSRQ 534 (675)
T ss_dssp --CSSHHHHHHSSSSCEEECCCSHHHH----HHHHHHHHHCTTSCEEEEECSS
T ss_pred --cHHHHHHhccCCCeEEEECCCHHHH----HHHHHHHHHhCCCcEEEEecCC
Confidence 123467788665433 333344444 4455555554 79999999974
No 71
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=83.41 E-value=0.81 Score=48.57 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHH-HhCCCeEecCCCcccCCC--CCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae-~~~~Pv~tt~~gkg~~~~--~hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++. +...++.|.+.......-.+.+|++ .+|.+-+.+....+..+. ......|. +..
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~--~~~ 157 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGN--GAM 157 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSC--CSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCC--CCC
Confidence 577888888888764 2334444444431234456789998 899886665332211111 11112231 111
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCcee
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVT 339 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~ 339 (431)
.. . ..-++++|+||++|+.+.+.....+..+ .++.|+|.||+....
T Consensus 158 ~~-~-~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ 207 (715)
T 2iv2_X 158 SN-A-INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIE 207 (715)
T ss_dssp SS-C-GGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred CC-C-HhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 11 1 1236899999999988754332211111 246899999987643
No 72
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=83.33 E-value=2.9 Score=43.21 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC---ce-eeeecCC-CChHHH
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN---RI-LHHTIGL-PDFTQE 148 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~---~~-~~~~~~~-~~~~d~ 148 (431)
+.-+|.|.+... + ..+|++ |=|.. -.+..|..|...+.|+++|.-+.......+. .. .. ..+. ....|.
T Consensus 418 ~l~~AiGaala~~~~~vv~i~--GDG~~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~-~~~~~~~~~d~ 494 (590)
T 1v5e_A 418 AIPGGLGAKNTYPDRQVWNII--GDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN-LFGVDFTDVDY 494 (590)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE--EHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCS-CCCCCCCCCCH
T ss_pred hHHHHHHHHHhCCCCeEEEEE--echHHhchHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCC-CccccCCCCCH
Confidence 344555655554 3 444444 55544 3468888899999998888855432211110 00 00 0110 011367
Q ss_pred HHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 149 ~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..+++.+.-...++++++++.+.+++|+..+. ..||+.|++..+-
T Consensus 495 ~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~-~~gp~liev~~~~ 539 (590)
T 1v5e_A 495 AKIAEAQGAKGFTVSRIEDMDRVMAEAVAANK-AGHTVVIDCKITQ 539 (590)
T ss_dssp HHHHHHTTSEEEEECBHHHHHHHHHHHHHHHH-TTCCEEEEEECCS
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHHHHHHhcC-CCCCEEEEEEecc
Confidence 78888887677788888888777777776533 2799999998774
No 73
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=82.66 E-value=4.9 Score=42.29 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=71.8
Q ss_pred ceEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCC
Q 014091 66 LNLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (431)
Q Consensus 66 i~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~ 143 (431)
=|++. ...|++++.+|.|+|...| ..++.+ ..+-..-+..+|..+-..+.|++++....... .+.+...|+
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~-~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g-~G~dG~tHq----- 474 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGGT-FLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTHQ----- 474 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC-----
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEEe-hHHHHHHHHHHHHHHHhcCCCEEEEEECCccC-cCCCCcccC-----
Confidence 46666 5899999999999998766 555543 55555555666777777899999886321111 232222332
Q ss_pred ChHHHHHHHhhheee-EEEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 144 DFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 144 ~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
...++.+++.+-.. .....++.++.. +++.|... .+||+|-+|..
T Consensus 475 -~~edla~lr~iP~l~V~~Pad~~e~~~----~l~~a~~~~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 475 -PVELVAALRAMPNLQVIRPSDQTETSG----AWAVALSSIHTPTVLCLSRQ 521 (673)
T ss_dssp -CSSHHHHHHHSTTCEEECCSSHHHHHH----HHHHHHHCTTCCEEEECCSS
T ss_pred -CHHHHHHHcCCCCCEEEeCCCHHHHHH----HHHHHHHhCCCeEEEEEcCC
Confidence 12346778866443 333444444444 45555554 69999998864
No 74
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=82.41 E-value=1.8 Score=44.94 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=74.3
Q ss_pred hhHHHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCC-------Cc-----eeee
Q 014091 74 ELNAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGT-------NR-----ILHH 138 (431)
Q Consensus 74 E~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~-------~~-----~~~~ 138 (431)
-..+.-+|.|.+.... +.+|++ |=|.. -.+.+|..|...+.|+++|.-+.......+ +. ....
T Consensus 444 ~G~~l~~AiGaala~~~~~vv~i~--GDGs~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (616)
T 2pan_A 444 LGWTIPAALGVCAADPKRNVVAIS--GDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFEN 521 (616)
T ss_dssp TTCHHHHHHHHHHHCTTCEEEEEE--EHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCC
T ss_pred ccchHHHHHHHHHhCCCCcEEEEE--cchhhhCCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccc
Confidence 3336667777776653 344443 55554 346788899999999988776543211100 00 0000
Q ss_pred ecCCC---ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 139 TIGLP---DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 139 ~~~~~---~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..... ...|...+++.+--...++++++++.+.+++|+..+....||+.|++..+-
T Consensus 522 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~~~~ 580 (616)
T 2pan_A 522 INSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILER 580 (616)
T ss_dssp TTCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEEBCS
T ss_pred cccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00000 013677888888766778999999999888888766656899999998764
No 75
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=82.02 E-value=7.4 Score=41.13 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=69.6
Q ss_pred eEEec-CchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVGC-CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|++.+ --|++++.+|.|.|...| ..++.+ ..+=..-+...|..+-..+.||+++....... .+.+...|+.
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~----- 521 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQS----- 521 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC-----
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCC-----
Confidence 66664 789999999999997657 555543 33222334455555556789999886322211 2322233322
Q ss_pred hHHHHHHHhhheeeEE-EcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 145 FTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
...+.+++.+-.... ...++.++...+.. |....+||+|-+|..
T Consensus 522 -~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~----Ai~~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 522 -VEHVASLRLIPNLDVWRPADTVETAVAWTY----AVAHQHPSCLIFSRQ 566 (711)
T ss_dssp -SSHHHHHHTSTTCEEECCSSHHHHHHHHHH----HHHSSSCEEEECCSS
T ss_pred -hhHHHHHhcCCCCEEEecCCHHHHHHHHHH----HHhcCCCEEEEeeCC
Confidence 234788888865443 34445555555444 444679999998853
No 76
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=80.36 E-value=6.7 Score=41.32 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=70.6
Q ss_pred eEEe-cCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCC
Q 014091 67 NLVG-CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (431)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (431)
|++. .--|++++.+|.|-|...| ..+|- |..+=..=+-.++..+-..+.||+++.....-. .+.+...|+.+
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~i---- 501 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPI---- 501 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCS----
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCH----
Confidence 4555 5689999999999999867 55543 222222212344555666799999997433221 23333344322
Q ss_pred hHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 145 FTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 145 ~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
.++.+++.+-...... |.+. .....+++.|... .+||+|-+|..
T Consensus 502 --ed~a~lr~iPnl~V~~--Pad~-~E~~~~l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 502 --EQLAALRAMPNVSVIR--PADG-NESVAAWRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp --SHHHHHHTSTTCEEEC--CSSH-HHHHHHHHHHHHCSSSCEEEECCSS
T ss_pred --HHHHHHhcCCCCEEEe--eCCH-HHHHHHHHHHHHcCCCCEEEEeecc
Confidence 2478888886654332 3332 2345667777766 69999998863
No 77
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=79.55 E-value=2.9 Score=44.89 Aligned_cols=82 Identities=18% Similarity=-0.018 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
.-+++++.+++.|++.+ ...++.|.... .+..-.+.+|++.+|.+.+.......... .+ ..+. ..
T Consensus 321 SWdeAl~~ia~~L~~i~~~~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~~~~~~~~------~~----~~~~-~~- 387 (783)
T 3i9v_3 321 TWEEAFLALKEGLKEARGEEVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQGRTAAPA------SL----FPPA-SL- 387 (783)
T ss_dssp CHHHHHHHHHHHHHTCCTTSEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEETTCCSSCG------GG----SCBC-CH-
T ss_pred CHHHHHHHHHHHHHhhccCCEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCCchhhhhh------cc----CCCC-CH-
Confidence 46788999999998865 44555555443 23456789999999988775442111100 11 1111 12
Q ss_pred HHhhhCCEEEEeCCccCc
Q 014091 298 EIVESADAYVFVGPIFND 315 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~~ 315 (431)
.-++++|+||++| .+.+
T Consensus 388 ~di~~ad~Il~~G-Np~~ 404 (783)
T 3i9v_3 388 EDLLQADFALVLG-DPTE 404 (783)
T ss_dssp HHHHHCSCEEEES-CHHH
T ss_pred HHHhhCCEEEEeC-ChhH
Confidence 3357999999999 7643
No 78
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=78.78 E-value=0.83 Score=42.86 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=32.6
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC--CCCcceEEEccCceee
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~Id~d~~~~ 340 (431)
.+.+.+++||++|++|+++.-+...++... .++.++|.||.++...
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~ 256 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYI 256 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 445567899999999999975543333222 2467899999988655
No 79
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=77.35 E-value=20 Score=36.91 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=82.7
Q ss_pred cCCCEEEecCCC-chHHHHHhhhcCCCceEEecCch---hHHHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhh
Q 014091 40 IGAKDVFSVPGD-FNLTLLDHLIAEPELNLVGCCNE---LNAGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAY 112 (431)
Q Consensus 40 ~GV~~vFgvpG~-~~~~l~~al~~~~~i~~v~~~hE---~~A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~ 112 (431)
.+=+.++....+ +..-....+.-...-+++....- ..+.-+|.|.+.... ..+|+ .|=|+.+ .+..|..|.
T Consensus 384 l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~--~GDG~~~~~~~~l~~a~ 461 (603)
T 4feg_A 384 AEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNL--AGDGGASMTMQDLATQV 461 (603)
T ss_dssp CCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE--EEHHHHHHHGGGHHHHH
T ss_pred CCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEE--eccHHHhhhHHHHHHHH
Confidence 344556555333 32233333432234556554321 224455666666543 34444 4666553 467788898
Q ss_pred hcCCcEEEEeCCCCCcccCCCc---eeee-ecCC-CChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEE
Q 014091 113 SENLPVICIVGGPNSNDYGTNR---ILHH-TIGL-PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (431)
Q Consensus 113 ~~~~Pvl~I~g~~~~~~~~~~~---~~~~-~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~ 187 (431)
..+.|+++|.-+......-+.. .... ..++ ....|...+++.+--...++.+++++.+.+++|+. ....||++
T Consensus 462 ~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~--~~~~gP~l 539 (603)
T 4feg_A 462 QYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKA--IAQHEPVL 539 (603)
T ss_dssp HTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHH--HTTTSCEE
T ss_pred HHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHH--hcCCCcEE
Confidence 9999999988665322110000 0000 0110 01135677888876667788888887776666653 15679999
Q ss_pred EEEccCC
Q 014091 188 ISISCNL 194 (431)
Q Consensus 188 l~iP~dv 194 (431)
|++..+-
T Consensus 540 Iev~~~~ 546 (603)
T 4feg_A 540 IDAVITG 546 (603)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 9998853
No 80
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=76.34 E-value=13 Score=38.33 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHHHHHHc-CCCEEE-ecCCCchHHHHHhhhcCCCceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchH-H
Q 014091 32 HLARRLVEI-GAKDVF-SVPGDFNLTLLDHLIAEPELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGL-S 103 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vF-gvpG~~~~~l~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n 103 (431)
.+++.|.+. .=+.++ .=.|.+.......+.-....+++..+. =..+.-+|.|.+.... +.+|++ |=|.. -
T Consensus 379 ~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~--GDG~~~~ 456 (589)
T 2pgn_A 379 RAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGT--GDGALYY 456 (589)
T ss_dssp HHHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEE--EHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEE--eeHHHHh
Confidence 344444443 223333 333444344444443222356665432 2234556666666543 444444 55544 3
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCC--------CceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A 175 (431)
.+..|..|...+.|+++|.-+.......+ .... ..+. ..|...+++.+.-...++++++++.+.+++|
T Consensus 457 ~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~-~~~~---~~d~~~~a~a~G~~~~~v~~~~el~~al~~a 532 (589)
T 2pgn_A 457 HFNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNW-TEFM---NPDWVGIAKAFGAYGESVRETGDIAGALQRA 532 (589)
T ss_dssp HGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCS-CBCC---CCCHHHHHHHHTCEEEECTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCcc-ccCC---CCCHHHHHHHCCCeEEEECCHHHHHHHHHHH
Confidence 46889999999999988886543221100 0000 0111 1366777888776677899998887777777
Q ss_pred HHHhhhCCCcEEEEEccCC
Q 014091 176 ISTALKESKPVYISISCNL 194 (431)
Q Consensus 176 ~~~A~~~~GPv~l~iP~dv 194 (431)
+. ..||+.|++..+-
T Consensus 533 ~~----~~gp~liev~~~~ 547 (589)
T 2pgn_A 533 ID----SGKPALIEIPVSK 547 (589)
T ss_dssp HH----HCSCEEEEEECCS
T ss_pred Hh----CCCCEEEEEEecC
Confidence 64 4799999998764
No 81
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=75.78 E-value=3.9 Score=41.99 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=71.9
Q ss_pred CceEEecCc---hhHHHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC-----
Q 014091 65 ELNLVGCCN---ELNAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN----- 133 (431)
Q Consensus 65 ~i~~v~~~h---E~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~----- 133 (431)
.-+++.... =..+.-+|.|.+.... +.+|++ |=|.. -.+..|..|...+.|+++|.-+.......+.
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~--GDG~~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~ 487 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVS--GDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKK 487 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEE--EHHHHHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEE--cChHHhccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHh
Confidence 345655432 1124445566665542 344443 65555 3467888999999999988865432211000
Q ss_pred --ceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 134 --RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 134 --~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
......+. ..|...+++.+--...++++++++.+.+++|+ ...||+.|++..+-
T Consensus 488 ~~~~~~~~~~---~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~gp~liev~~~~ 543 (566)
T 1ozh_A 488 YQRLSGVEFG---PMDFKAYAESFGAKGFAVESAEALEPTLRAAM----DVDGPAVVAIPVDY 543 (566)
T ss_dssp HSSCCSCBCC---CCCHHHHHHTTTSEEEECCSGGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred cCCCccCcCC---CCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00000111 13677888888766778988888777666665 45799999998763
No 82
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=75.69 E-value=5.3 Score=40.50 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHH-cCCCEEE-ecCCCchHHHHHhhhcCCCceEEecCchh---HHHHhhhhhhhhcC--ccEEEEeCCcchH-H
Q 014091 32 HLARRLVE-IGAKDVF-SVPGDFNLTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG--VGACVVTFTVGGL-S 103 (431)
Q Consensus 32 ~l~~~L~~-~GV~~vF-gvpG~~~~~l~~al~~~~~i~~v~~~hE~---~A~~~A~gyar~tg--~gv~~~t~GpG~~-n 103 (431)
.+++.|.+ ..=+.++ .=.|.....+...+.-...-+++..+. . .+.-+|.|.+.... ..+|+ .|=|.. -
T Consensus 357 ~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~--~GDG~~~~ 433 (528)
T 1q6z_A 357 TVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAV--IGDGSANY 433 (528)
T ss_dssp HHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEE--EEHHHHTT
T ss_pred HHHHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEE--ECCcHHHh
Confidence 34444444 3334444 435555544444443222456776654 3 23345666666543 34444 366655 2
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCCc--ee--eeecCCC-ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHH
Q 014091 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNR--IL--HHTIGLP-DFTQELRCFQAITCSQAVVNNLGDAHELIDTAIST 178 (431)
Q Consensus 104 ~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~--~~--~~~~~~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~ 178 (431)
.+.+|..|...+.|+++|.-+.......+.. .. ....+.. ...|...+++.+--...++++++++ ++|++.
T Consensus 434 ~~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~al~~ 509 (528)
T 1q6z_A 434 SISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL----KGSLQE 509 (528)
T ss_dssp TGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHH----HHHHHH
T ss_pred hHHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHH----HHHHHH
Confidence 4788889999999999988654321110000 00 0000000 1135677777776666688877655 455555
Q ss_pred hhhCCCcEEEEEccC
Q 014091 179 ALKESKPVYISISCN 193 (431)
Q Consensus 179 A~~~~GPv~l~iP~d 193 (431)
+...+||+.|++..+
T Consensus 510 a~~~~gp~liev~~~ 524 (528)
T 1q6z_A 510 ALSAKGPVLIEVSTV 524 (528)
T ss_dssp HHTCSSCEEEEEEBC
T ss_pred HHHCCCcEEEEEEec
Confidence 555689999998765
No 83
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=75.57 E-value=9.1 Score=40.36 Aligned_cols=158 Identities=16% Similarity=0.061 Sum_probs=91.6
Q ss_pred CcccHHHHHHHHHHHcC--CCEEEecCCCchHHH------HHhhhcC-------CC---ceEEe-cCchhHHHHhhhhhh
Q 014091 25 SVGTLGRHLARRLVEIG--AKDVFSVPGDFNLTL------LDHLIAE-------PE---LNLVG-CCNELNAGYAADGYA 85 (431)
Q Consensus 25 ~~~~~a~~l~~~L~~~G--V~~vFgvpG~~~~~l------~~al~~~-------~~---i~~v~-~~hE~~A~~~A~gya 85 (431)
..++.-+++-+.|.+.. .+.++++..+-...- .+.+.+. ++ =|++. ..-|++++.+|.|.|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 45667788888887764 356776655432110 1223221 11 26776 489999999999999
Q ss_pred hhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCC
Q 014091 86 RSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN 164 (431)
Q Consensus 86 r~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~ 164 (431)
...| ..++- |..+=..-+.+.|..+-..+.||+++.....-. .+.+...|+ ....+.+++.+-......
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq------~ied~a~lr~iPnl~V~~-- 522 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQ------PIEHLSALRAIPRLSVVR-- 522 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTS------CSSHHHHHHTSTTCEEEC--
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccC------ChhHHHHHhcCCCCEEEe--
Confidence 8867 55554 222212224455666667899999986322221 333333332 223578888886544322
Q ss_pred cchHHHHHHHHHHHhhhCC---CcEEEEEccC
Q 014091 165 LGDAHELIDTAISTALKES---KPVYISISCN 193 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~~~---GPv~l~iP~d 193 (431)
|.+. ..+..+++.|...+ |||+|-+|..
T Consensus 523 Pad~-~e~~~~l~~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 523 PADA-NETAYAWRTILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp CSSH-HHHHHHHHHHHTTTTCSSCEEEECCSS
T ss_pred CCCH-HHHHHHHHHHHHccCCCCCEEEEeccc
Confidence 3332 23355666666654 6999999864
No 84
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=75.36 E-value=0.5 Score=52.16 Aligned_cols=116 Identities=13% Similarity=0.015 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCH
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~ 294 (431)
-+++++.+++.|++. ++..++.|.+.........+.+|+..+|.+.+.....-+......+...|. +.....
T Consensus 163 WdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~--~~~~~~ 240 (976)
T 2ivf_A 163 WDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGK--MHMGYS 240 (976)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSC--CCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecC--CCCCCC
Confidence 567888888877653 344444554443222235678999999988765321111111111222332 111111
Q ss_pred HHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCceee
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~~ 340 (431)
..-+++||+||++|+...+.....+..+ .++.|+|.||+.....
T Consensus 241 --~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~t 288 (976)
T 2ivf_A 241 --ADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPT 288 (976)
T ss_dssp --GGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTT
T ss_pred --hhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcc
Confidence 1236899999999988754333222211 1468999999886543
No 85
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=74.94 E-value=8 Score=39.59 Aligned_cols=111 Identities=14% Similarity=0.008 Sum_probs=66.2
Q ss_pred HHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCce--eeeecCC-CChHHHHHHH
Q 014091 78 GYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI--LHHTIGL-PDFTQELRCF 152 (431)
Q Consensus 78 ~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~--~~~~~~~-~~~~d~~~~~ 152 (431)
.-+|.|.+...+ +.+|++ |=|... .+..|..|...+.|+++|.-....-....... -...... ....|...++
T Consensus 432 l~~AiGaala~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a 509 (568)
T 2c31_A 432 MGYCVAAAAVTGKPVIAVE--GDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMM 509 (568)
T ss_dssp HHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHH
Confidence 334444444444 445544 566554 36788889999999998886654310111000 0000000 0113677888
Q ss_pred hhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+.+--...++++++++.+.+++|+ ...||+.|++..|-
T Consensus 510 ~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 547 (568)
T 2c31_A 510 EAFGGKGYVANTPAELKAALEEAV----ASGKPCLINAMIDP 547 (568)
T ss_dssp HTTTCEEEEESSHHHHHHHHHHHH----HHTSCEEEEEEBCT
T ss_pred HHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 888777788888877766666665 45799999998774
No 86
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=74.86 E-value=6.5 Score=37.99 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=56.1
Q ss_pred cEEEEeCCcchHHH--H-HHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC--Cc
Q 014091 91 GACVVTFTVGGLSV--L-NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (431)
Q Consensus 91 gv~~~t~GpG~~n~--~-~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (431)
..+++..|=|+++. + -++..|...+.|+|+|.-..... ... ........ .|...+++.+--...+++ ++
T Consensus 167 ~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~--~~~~~~~~---~d~~~~a~a~G~~~~~Vdg~d~ 240 (367)
T 1umd_A 167 QVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISV--DYRHQTHS---PTIADKAHAFGIPGYLVDGMDV 240 (367)
T ss_dssp CCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTE--EHHHHCSS---SCSGGGGGGTTSCEEEEETTCH
T ss_pred CeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-ecc--ChhhccCC---CCHHHHHHHcCCcEEEeCCCCH
Confidence 34444557777642 2 24777888999999998654411 111 00001111 123344555433333444 34
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..+.+++++|++.+....||+.|++-..-
T Consensus 241 ~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 241 LASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 45677778888888777899999997554
No 87
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=72.83 E-value=19 Score=37.67 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=66.2
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCCCh
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLPDF 145 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~~~ 145 (431)
+.-+|.|.+.... ..+|+ .|=|... .+..|..|...++|+++|.-.......- .+...+..+. .
T Consensus 518 ~lpaAiGaalA~p~~~Vv~i--~GDGsf~~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~---~ 592 (677)
T 1t9b_A 518 GLPAAIGAQVAKPESLVIDI--DGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQL---N 592 (677)
T ss_dssp HHHHHHHHHHHCTTSEEEEE--EEHHHHHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCC---C
T ss_pred hHHHHHHHHHhCCCCeEEEE--EeehHHhccHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCC---C
Confidence 4556667666543 33333 4665553 4678889999999998887654322110 0000000011 1
Q ss_pred HHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.|...+++.+--...++++++++.+.+++| ....||+.|++..+-
T Consensus 593 ~d~~~la~a~G~~~~~v~~~~el~~al~~a----~~~~gp~lIev~~~~ 637 (677)
T 1t9b_A 593 PDFIKLAEAMGLKGLRVKKQEELDAKLKEF----VSTKGPVLLEVEVDK 637 (677)
T ss_dssp CCHHHHHHHTTCEEEEECSHHHHHHHHHHH----HHCSSCEEEEEEBCS
T ss_pred CCHHHHHHHcCCeEEEECCHHHHHHHHHHH----HHCCCcEEEEEEecC
Confidence 366788888877777888877665555554 446799999998774
No 88
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=72.29 E-value=4.8 Score=41.31 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeee-ecCCCChHHHHHHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-TIGLPDFTQELRCF 152 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~ 152 (431)
+.-+|.|.+.... +.+|+ .|=|.. -.+..|..|...+.|+++|.-........+. +++ .+.+....|...++
T Consensus 418 ~l~~A~G~ala~~~~~vv~i--~GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~--~~~~~~~~~~~~d~~~~a 493 (568)
T 2wvg_A 418 SVPAAFGYAVGAPERRNILM--VGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVM--IHDGPYNNIKNWDYAGLM 493 (568)
T ss_dssp HHHHHHHHHHHCTTSEEEEE--EEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHT--TSCCGGGCCCCCCHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEE--EcChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeee--eccCCCcCCCCCCHHHHH
Confidence 4445566665543 34444 366655 3467788888899998877754332211100 000 00111112556667
Q ss_pred hhhee---------eEEEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 153 QAITC---------SQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 153 ~~~~k---------~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
+.+.- ..+++++.+++.+.+++| ... .||+.|++..+
T Consensus 494 ~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a----~~~~~gp~liev~~~ 540 (568)
T 2wvg_A 494 EVFNGNGGYDSGAGKGLKAKTGGELAEAIKVA----LANTDGPTLIECFIG 540 (568)
T ss_dssp HHHHCTTSSSCCCCEEEEESBHHHHHHHHHHH----HHCCSSCEEEEEECC
T ss_pred HHhCCCcccccCCcceEEeCCHHHHHHHHHHH----HhcCCCcEEEEEEcC
Confidence 76654 666887776665555554 444 79999998866
No 89
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=71.33 E-value=13 Score=37.98 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHcC--CCE-EEecCCCchHHHHHhhhcCCCceEEecC---chhHHHHhhhhhhhhcC--ccEEEEeCCc
Q 014091 28 TLGRHLARRLVEIG--AKD-VFSVPGDFNLTLLDHLIAEPELNLVGCC---NELNAGYAADGYARSRG--VGACVVTFTV 99 (431)
Q Consensus 28 ~~a~~l~~~L~~~G--V~~-vFgvpG~~~~~l~~al~~~~~i~~v~~~---hE~~A~~~A~gyar~tg--~gv~~~t~Gp 99 (431)
.+.+.|.+.|.+.. -+. ++.=.|.+.......+.-...-+++... .=..+.-+|.|.+.... ..+|++ |=
T Consensus 386 ~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~--GD 463 (573)
T 2iht_A 386 QVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIA--GD 463 (573)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEE--EH
T ss_pred HHHHHHHHhcccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEE--cc
Confidence 34555556665410 023 3333333333333333222234566543 22235556667666543 444444 55
Q ss_pred chH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCC-------ceee--eecCCCChHHHHHHHhhheeeEEEcCCcchHH
Q 014091 100 GGL-SVLNAIAGAYSENLPVICIVGGPNSNDYGTN-------RILH--HTIGLPDFTQELRCFQAITCSQAVVNNLGDAH 169 (431)
Q Consensus 100 G~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~-------~~~~--~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~ 169 (431)
|.. -.+.+|..|...+.|+++|.-+.......+. .... ..+.. .|...+++.+.-...++++++++.
T Consensus 464 G~~~~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~a~a~G~~~~~v~~~~~l~ 540 (573)
T 2iht_A 464 GGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGG---VDFVALAEANGVDATRATNREELL 540 (573)
T ss_dssp HHHHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCC---CCHHHHHHHTTCEEEECCSHHHHH
T ss_pred HHHHhHHHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCC---CCHHHHHHHcCCeEEEeCCHHHHH
Confidence 554 3467888999999999887765432111000 0000 01221 366778888876677888776655
Q ss_pred HHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 170 ELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 170 ~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+. ++.|....||+.|++..+-
T Consensus 541 ~a----l~~a~~~~gp~liev~~~~ 561 (573)
T 2iht_A 541 AA----LRKGAELGRPFLIEVPVNY 561 (573)
T ss_dssp HH----HHHHHTSSSCEEEEEEBCC
T ss_pred HH----HHHHHhCCCCEEEEEECCC
Confidence 54 4445556799999998763
No 90
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=68.79 E-value=3.6 Score=42.20 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=59.8
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeee-ecCCCChHHHHHHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH-TIGLPDFTQELRCF 152 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~ 152 (431)
+.-+|.|.+.... +.+|+ .|=|... .+..|..|...+.|+++|.-+.......+. +++ .+.+....|...++
T Consensus 414 ~l~~A~G~ala~~~~~vv~~--~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~--~~~~~~~~~~~~d~~~~a 489 (566)
T 2vbi_A 414 SVPSAFGNAMGSQDRQHVVM--VGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIA--IHDGPYNYIKNWDYAGLM 489 (566)
T ss_dssp HHHHHHHHHHTCTTSEEEEE--EEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHT--TSCCGGGCCCCCCTTTHH
T ss_pred HHHHHHHHHHhCCCCcEEEE--EcchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEe--eccCCccCCCCCCHHHHH
Confidence 3344555555432 33443 4666553 457788888999998888765432211110 000 00000012444555
Q ss_pred hhhee-----eEEEcCCcchHHHHHHHHHHHhhhC-CCcEEEEEccC
Q 014091 153 QAITC-----SQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (431)
Q Consensus 153 ~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~-~GPv~l~iP~d 193 (431)
+.+-- ...++++++++.+ |++.+... .||+.|++..+
T Consensus 490 ~a~G~~~~~~~~~~v~~~~el~~----al~~a~~~~~gp~liev~~~ 532 (566)
T 2vbi_A 490 EVFNAGEGHGLGLKATTPKELTE----AIARAKANTRGPTLIECQID 532 (566)
T ss_dssp HHHHTTTCCCEEEEECSHHHHHH----HHHHHHHCCSSCEEEEEECC
T ss_pred HHcCCCCCCccEEEeCCHHHHHH----HHHHHHhcCCCcEEEEEEeC
Confidence 55544 5667877766555 45555555 79999999866
No 91
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=67.75 E-value=30 Score=35.42 Aligned_cols=114 Identities=22% Similarity=0.170 Sum_probs=67.1
Q ss_pred hHHHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccC--------CCceeeeecCCC
Q 014091 75 LNAGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG--------TNRILHHTIGLP 143 (431)
Q Consensus 75 ~~A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~--------~~~~~~~~~~~~ 143 (431)
..+.-+|.|.+.... +.+|++ |=|.. -.+.+|..|...+.|+++|.-+....... ........++.+
T Consensus 429 G~~l~~AiGaala~~~~~vv~i~--GDGs~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p 506 (590)
T 1ybh_A 429 GFGLPAAIGASVANPDAIVVDID--GDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDP 506 (590)
T ss_dssp TCHHHHHHHHHHHCTTSCEEEEE--EHHHHHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCG
T ss_pred cchHHHHHHHHHhCCCCcEEEEE--ccchhhccHHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCcccccccccc
Confidence 336667777776653 444443 55554 34678889999999988887554321110 000000011100
Q ss_pred -----ChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 144 -----DFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 144 -----~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
...|...+++.+.-...++++++++.+. ++.|....||+.|++..+-
T Consensus 507 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~a----l~~a~~~~gp~liev~~~~ 558 (590)
T 1ybh_A 507 AQEDEIFPNMLLFAAACGIPAARVTKKADLREA----IQTMLDTPGPYLLDVICPH 558 (590)
T ss_dssp GGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHH----HHHHHHSSSCEEEEEECCT
T ss_pred ccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHH----HHHHHhCCCCEEEEEEecC
Confidence 0136677888876666788777665554 4445555799999998774
No 92
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=66.35 E-value=20 Score=36.59 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=81.3
Q ss_pred HHHHHHHHc-CCCEEEecCCCc-hHHHHHhhhcCCCceEEecCc---hhHHHHhhhhhhhhc---C-ccEEEEeCCcchH
Q 014091 32 HLARRLVEI-GAKDVFSVPGDF-NLTLLDHLIAEPELNLVGCCN---ELNAGYAADGYARSR---G-VGACVVTFTVGGL 102 (431)
Q Consensus 32 ~l~~~L~~~-GV~~vFgvpG~~-~~~l~~al~~~~~i~~v~~~h---E~~A~~~A~gyar~t---g-~gv~~~t~GpG~~ 102 (431)
.+++.|.+. .=+.++..-.+. .+.....+.-...-+++..+. =..+.-+|.|.+... + +.+|++ |=|..
T Consensus 374 ~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~--GDG~~ 451 (563)
T 2uz1_A 374 HASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVT--GDGSV 451 (563)
T ss_dssp HHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEE--EHHHH
T ss_pred HHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEE--ccHHH
Confidence 344444443 224444443322 233344343222345554322 223444555655543 3 444443 55554
Q ss_pred -HHHHHHHHhhhcCCcEEEEeCCCCCcccCCCc--eee---eecCCC-ChHHHHHHHhhheeeEEEcCCcchHHHHHHHH
Q 014091 103 -SVLNAIAGAYSENLPVICIVGGPNSNDYGTNR--ILH---HTIGLP-DFTQELRCFQAITCSQAVVNNLGDAHELIDTA 175 (431)
Q Consensus 103 -n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~--~~~---~~~~~~-~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A 175 (431)
-.+.+|..|...+.|+++|.-+.......+.. ..+ ...+.. ...|...+++.+--...++++++++.+.+++|
T Consensus 452 ~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a 531 (563)
T 2uz1_A 452 GYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQA 531 (563)
T ss_dssp GGGTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH
Confidence 24678888899999988887654321110000 000 011100 11366778888876677888876666555555
Q ss_pred HHHhhhCCCcEEEEEccC
Q 014091 176 ISTALKESKPVYISISCN 193 (431)
Q Consensus 176 ~~~A~~~~GPv~l~iP~d 193 (431)
+ ...||+.|++..+
T Consensus 532 ~----~~~gp~liev~~~ 545 (563)
T 2uz1_A 532 L----AHNRPACINVAVA 545 (563)
T ss_dssp H----HSSSCEEEEEECC
T ss_pred H----HCCCCEEEEEEec
Confidence 4 4679999999877
No 93
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=65.97 E-value=20 Score=28.72 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcCC--CEEEeCCccchh-----------chHHHHHHHHHHhCCCeEecCC---CcccCCC------
Q 014091 221 LEAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMPS---GKGLVPE------ 278 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~r--pvI~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~~---gkg~~~~------ 278 (431)
....++-+..+++.... -|++.+.|+... +..+.+.+|++..|++++.-.. .+|+.++
T Consensus 17 ~~~al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~ 96 (130)
T 2hy5_A 17 SDSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRN 96 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhc
Confidence 34556666666665443 377888888532 3456788999988999887543 5687655
Q ss_pred ---CCCCcceeecCCCCCHHHHHHhhhCCEEEEeCC
Q 014091 279 ---HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311 (431)
Q Consensus 279 ---~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~ 311 (431)
.+.+..|. -..+-....+++.++|-||.+|.
T Consensus 97 ~~~~~~l~~g~--~i~~~~~l~~~~~~aD~vi~f~~ 130 (130)
T 2hy5_A 97 GKDATNIHPKF--RISGLGQLVEAAIQADRLVVFGD 130 (130)
T ss_dssp TCSCCCBCTTC--EEECTHHHHHHHHHSSEEEEECC
T ss_pred ccccccccCCe--EEeCHHHHHHHHHhCCEEEEeCC
Confidence 11344442 12334577888999999999983
No 94
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=64.09 E-value=17 Score=38.00 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
-+.+++++.+.|++.++.+|+....+..-.+.-.+.++.+++|..+..- +|+..+-..|... ....++.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~------ip~r~~egygl~~-----~~I~~~~ 126 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPF------IPHRLEEGYGVLM-----ERVPEHL 126 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEC------CC-----------------------
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEe------cCCCCCccccCCH-----HHHHhhc
Confidence 4667889999999988877776665554456677888999999875543 3333232223211 1223333
Q ss_pred hhCCEEEEeCCccCcccccccccCCCCcceEEEccCc
Q 014091 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (431)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~Id~d~ 337 (431)
++.|+||++.+.-.+..-... ....+.++|.+|.+.
T Consensus 127 ~~~~LIItVD~G~~s~~~i~~-a~~~g~~VIViDHH~ 162 (666)
T 2zxr_A 127 EASDLFLTVDCGITNHAELRE-LLENGVEVIVTDHHT 162 (666)
T ss_dssp --CCEEEESCCC---------------CEEEEECCCC
T ss_pred cCCCEEEEEcCCchhhhhHHH-HHhCCCCEEEECCcC
Confidence 578999999876543332111 111245677777553
No 95
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=63.69 E-value=22 Score=30.81 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHH--Hhhhc-----CCCceEEecCchhH---HHHhhhhh----hh----hcC
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLL--DHLIA-----EPELNLVGCCNELN---AGYAADGY----AR----SRG 89 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~--~al~~-----~~~i~~v~~~hE~~---A~~~A~gy----ar----~tg 89 (431)
..++.|++.|++.|-=++||+-++...... ..|.. ..+++.+....+.+ +..-..+| ++ .-+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 456778888888899999998877765433 33332 24676665442322 11111222 21 123
Q ss_pred -ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 014091 90 -VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (431)
Q Consensus 90 -~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~ 128 (431)
--++++.|..|-+ +.+..+..|+..++|+|.||+.....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 3455666666665 78899999999999999999976544
No 96
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=62.24 E-value=7.7 Score=43.69 Aligned_cols=116 Identities=10% Similarity=-0.047 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCH
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~ 294 (431)
-+++++.+++.|++. ++...+.+.............+|+..+|-+.+.....-.-.+..++...|.. .....
T Consensus 163 WDEAld~IA~~l~~i~~~~Gp~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~-~~~~~- 240 (1247)
T 1q16_A 163 WQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPE- 240 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCS-CCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCC-CCCCC-
Confidence 466777777766542 2333343333221112223358999999887654332121222122222210 00111
Q ss_pred HHHHHhhhCCEEEEeCCccCccccccccc----CCCCcceEEEccCceee
Q 014091 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (431)
Q Consensus 295 ~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~I~Id~d~~~~ 340 (431)
..-+.+||+||++|+...+..+..+.. ..++.|+|.||+...+.
T Consensus 241 --~~D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~t 288 (1247)
T 1q16_A 241 --SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEI 288 (1247)
T ss_dssp --GGGGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHH
T ss_pred --HHHHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcc
Confidence 123578999999999875433222221 12478999999876543
No 97
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=61.88 E-value=1.1 Score=47.55 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCCccchhchHHHHHHHHHH-hCCCeEecCCCcccCC--CCCCCcceeecCCC
Q 014091 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVP--EHHPHFIGTYWGAV 291 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a------~rpvI~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg~~~--~~hp~~~G~~~G~~ 291 (431)
-+++++.+++.|++. +...++.|+.. .....-.+.+|++. +|.+-+.+......-+ .......|. ....
T Consensus 81 WdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~-~~~~ 158 (723)
T 2nap_A 81 WDEALDLMASRFRSSIDMYGPNSVAWYGSGQC-LTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGK-DEPM 158 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTS-CHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSS-CSCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcc-cchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCC-CCCC
Confidence 567888888888764 23444444333 22334567789998 8877655322100000 000111121 0011
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCcccccccccC----CC--CcceEEEccCceee
Q 014091 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IK--KEKAIIVQPHRVTV 340 (431)
Q Consensus 292 ~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~--~~~~I~Id~d~~~~ 340 (431)
.+ ..-++++|+||++|+.+.+.....+..+ .+ +.|+|.||+.....
T Consensus 159 ~~---~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~t 210 (723)
T 2nap_A 159 GT---YADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNT 210 (723)
T ss_dssp SC---GGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGG
T ss_pred CC---hhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCch
Confidence 11 1236899999999988754332211111 12 78999999876543
No 98
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=61.87 E-value=36 Score=28.91 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHh--hh-----cCCCceEEecCchhHH---HHh--------hhhhhhhcC-
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNA---GYA--------ADGYARSRG- 89 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l~-----~~~~i~~v~~~hE~~A---~~~--------A~gyar~tg- 89 (431)
.++.|++.+.+.+-=++||+-++......-+ |. ...+++.+....+.+- ..- ...+...-+
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 4455666666776666777766555443322 11 1235655544322221 111 111222223
Q ss_pred ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCC
Q 014091 90 VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 90 ~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
--++++.|-.|-+ +.+..+..|+..+.++|.||+...
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3455666666655 788888899999999999998754
No 99
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=60.68 E-value=3 Score=43.20 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=69.8
Q ss_pred CceEEecCch---hHHHHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCC------
Q 014091 65 ELNLVGCCNE---LNAGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTN------ 133 (431)
Q Consensus 65 ~i~~v~~~hE---~~A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~------ 133 (431)
..+++..+.= ..+.-+|.|.+...+ +.+|++ |=|... .+..|..|...+.|+++|.-........+.
T Consensus 445 ~~~~~~~~G~~~ig~~l~~AiGaala~~~~vv~i~--GDGsf~~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~ 522 (604)
T 2x7j_A 445 PFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVI--GDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASE 522 (604)
T ss_dssp CCEEECCTTTCCSSSHHHHHHHHHHHHTSCEEEEE--EHHHHHHTGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSC
T ss_pred CceEEeCCCcCCcCcHHHHHHHHHhcCCCcEEEEE--ccHHHHhHHHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCcc
Confidence 3566654431 124445666666555 555554 555543 367888899999999888765432211000
Q ss_pred -ceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 134 -RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 134 -~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
......+++....|...+++.+--...++++++++ ++|++.|....||+.|++..+
T Consensus 523 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el----~~al~~a~~~~gp~liev~~~ 579 (604)
T 2x7j_A 523 KTHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEF----KTAYAPQADKPGLHLIEIKTD 579 (604)
T ss_dssp HHHHHHHTTCCCCCCTHHHHHHTTCEEECCSSHHHH----HHHCCCCCSSCCEEEEEEECC
T ss_pred chhhHhhccCCCCCCHHHHHHHcCCeEEecCCHHHH----HHHHHHHHhCCCCEEEEEECC
Confidence 00000111111135677777776667788776654 555555555679999998865
No 100
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=59.48 E-value=13 Score=33.68 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-..+..|++.|....+| ++++|..- .+.+.+.++|+++|.+.++.-.--|.|- +... ..
T Consensus 54 ~~~L~~A~~~i~~i~~~~~vlfVgTk~---~~q~~V~k~A~~~g~~~v~~rwlgGtLT---------------N~~t-~~ 114 (252)
T 3u5c_A 54 WEKLVLAARIIAAIPNPEDVVAISSRT---FGQRAVLKFAAHTGATPIAGRFTPGSFT---------------NYIT-RS 114 (252)
T ss_dssp HHHHHHHHHHHTTSSSGGGEEEEECSH---HHHHHHHHHHHHSSCEEEESCCCTTSSS---------------CTTS-TT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCc---HHHHHHHHHHHHhCCceecCcccCCccc---------------Chhh-hh
Confidence 44677788888765554 78887532 4778999999999998876432223332 1111 23
Q ss_pred hhhCCEEEEeCCccC
Q 014091 300 VESADAYVFVGPIFN 314 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~ 314 (431)
+...|+||++..+-+
T Consensus 115 f~~PdllvV~Dp~~d 129 (252)
T 3u5c_A 115 FKEPRLVIVTDPRSD 129 (252)
T ss_dssp CCCCSEEEESCTTTT
T ss_pred ccCCceEEEeCCccc
Confidence 578999999987765
No 101
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=59.43 E-value=42 Score=28.14 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHh--h-----hcCCCceEEecCchhHH---HHhhhhh--------hhhcC
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--L-----IAEPELNLVGCCNELNA---GYAADGY--------ARSRG 89 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~a--l-----~~~~~i~~v~~~hE~~A---~~~A~gy--------ar~tg 89 (431)
..++.|++.|.+.+-=++||+-++......-+ | ....+++.+....+.+- ..-..+| ...-+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 35566667777787667788866665443332 1 11235555544322221 1111122 21123
Q ss_pred -ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCC
Q 014091 90 -VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 90 -~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
--++++.|-.|-+ +.+..+..|+..+.++|.||+...
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3455555666655 788888899999999999998643
No 102
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=58.90 E-value=14 Score=37.78 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=65.3
Q ss_pred HHHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCCceee---eecC--CCChHHHH
Q 014091 77 AGYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH---HTIG--LPDFTQEL 149 (431)
Q Consensus 77 A~~~A~gyar~tg-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~---~~~~--~~~~~d~~ 149 (431)
+.-+|.|.+...+ +.+|++ |=|... .+..|..|...+.|+++|.-....-........+ +... .....|..
T Consensus 426 ~l~~AiGaa~a~~~~vv~i~--GDGsf~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 503 (564)
T 2q28_A 426 GMGYAIGASVTSGSPVVAIE--GDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYD 503 (564)
T ss_dssp HHHHHHHHHHHHCSCEEEEE--EHHHHHTTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGG
T ss_pred hHHHHHHHhhcCCCcEEEEE--cchHhhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHH
Confidence 3445555554444 455554 555553 3477888999999999887655431001000000 0000 00013566
Q ss_pred HHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+++.+.-...++++++++.+.+++|+ ...||+.|++..|-
T Consensus 504 ~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 544 (564)
T 2q28_A 504 KLMDAFRGVGYNVTTTDELRHALTTGI----QSRKPTIINVVIDP 544 (564)
T ss_dssp GGGGGGTCEEEEECSHHHHHHHHHHHH----HHTSCEEEEEEBCT
T ss_pred HHHHHcCCeEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 777877666778888877766666665 45799999998774
No 103
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=58.49 E-value=1.7 Score=47.97 Aligned_cols=115 Identities=11% Similarity=0.099 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcC-----------------CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCC--CCCC
Q 014091 221 LEAAVEATADFLNKAV-----------------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP--EHHP 281 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----------------rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~--~~hp 281 (431)
-+++++.+++.|++.+ .-+.+.|++.......-.+.+|++.+|.+-+.+....+.-+ ..+.
T Consensus 88 WdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~ 167 (977)
T 1h0h_A 88 WDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALA 167 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHHH
Confidence 5678888888887642 12444444332222334578899999987655321100000 0001
Q ss_pred CcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccC----CCCcceEEEccCcee
Q 014091 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVT 339 (431)
Q Consensus 282 ~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~I~Id~d~~~ 339 (431)
..+|. +.... .. .-+++||+||++|+...+.....+..+ .++.|+|.||+....
T Consensus 168 ~~~G~--~~~~~-~~-~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ 225 (977)
T 1h0h_A 168 ESYGR--GAMTN-HW-IDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTR 225 (977)
T ss_dssp HHHSC--CSCSS-CT-GGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCT
T ss_pred HHhCC--CCCCC-CH-HHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCc
Confidence 11221 11111 01 236899999999988754332222211 247899999987543
No 104
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=57.95 E-value=13 Score=28.81 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=27.3
Q ss_pred CCCEEEeCCccchhchHHHHHHHHHHhCCCe
Q 014091 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (431)
Q Consensus 236 ~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv 266 (431)
+|.++++|.|..++-..+.+++.++..|+++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~ 34 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPV 34 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCe
Confidence 4788999999988777789999999999996
No 105
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=57.31 E-value=3.3 Score=45.84 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcC-----------------CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCC--CCCC
Q 014091 221 LEAAVEATADFLNKAV-----------------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP--EHHP 281 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----------------rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~--~~hp 281 (431)
-+++++.+++.|++.+ .-+.+.|++.......-.+.+|++.+|.+-+.+.......+ ..+.
T Consensus 126 WdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~ 205 (1015)
T 1kqf_A 126 WEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASLA 205 (1015)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccHHHHHHH
Confidence 5678888888887642 22444444332222334578899999987655422100000 0001
Q ss_pred CcceeecCCCCCHHHHHHhhhCCEEEEeCCccCccccccccc----C-CCCcceEEEccCce
Q 014091 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----L-IKKEKAIIVQPHRV 338 (431)
Q Consensus 282 ~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~----~-~~~~~~I~Id~d~~ 338 (431)
..+|. .....+ ..-+++||+||++|+...+.....+.. . .++.|+|.||+...
T Consensus 206 ~~~G~-~~~~~~---~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t 263 (1015)
T 1kqf_A 206 PTFGR-GAMTNH---WVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFT 263 (1015)
T ss_dssp HHHSC-CSCSSC---TGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCC
T ss_pred HHhCC-CCCCCC---HHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 11221 001111 123679999999998875433222211 1 24679999998754
No 106
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=55.47 E-value=30 Score=30.41 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~ 298 (431)
..+.+.+|++.|.+. +| ++++|.-- .+.+.+.++|+++|.+.++.-.=-|.+- +.. .+
T Consensus 52 T~~~L~~A~~~i~~i-~~~~iLfVgTk~---~~~~~V~~~A~~~g~~~v~~rwlgG~LT---------------N~~-~~ 111 (208)
T 1vi6_A 52 LDERIRVAAKFLSRY-EPSKILLVAARQ---YAHKPVQMFSKVVGSDYIVGRFIPGTLT---------------NPM-LS 111 (208)
T ss_dssp HHHHHHHHHHHHTTS-CGGGEEEEECSG---GGHHHHHHHHHHHCCEEEESSCCTTTTT---------------CTT-ST
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEeCCH---HHHHHHHHHHHHhCCeeecCEECCCccc---------------Chh-hH
Confidence 345678888888876 44 78888632 4778999999999999887543223332 111 11
Q ss_pred HhhhCCEEEEeCCccC
Q 014091 299 IVESADAYVFVGPIFN 314 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~ 314 (431)
.+.+.|+|+++..+-+
T Consensus 112 ~f~~PdlliV~Dp~~e 127 (208)
T 1vi6_A 112 EYREPEVVFVNDPAID 127 (208)
T ss_dssp TCCCCSEEEESCTTTT
T ss_pred hhCCCCEEEEECCCcc
Confidence 2468999999987654
No 107
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=55.44 E-value=42 Score=28.58 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhh-----cCCCceEEecCchhHHHHh----hhhhh--------hhcC
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNAGYA----ADGYA--------RSRG 89 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~-----~~~~i~~v~~~hE~~A~~~----A~gya--------r~tg 89 (431)
.++.+++.|.+.+-=++||+-++.... +...|. ...+++.+...... ..+. -.+|. ..-+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDS-STITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCH-HHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCCh-hHHHHhhcCccHHHHHHHHHHhCCC
Confidence 456667888887766777776555433 222341 22466655443111 1111 11221 1123
Q ss_pred -ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCC
Q 014091 90 -VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 90 -~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
--++++.|..|-+ +.+..+..|+..++++|.||+...
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3466666666655 788999999999999999998643
No 108
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=54.68 E-value=5.6 Score=40.57 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=61.3
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCcccC-----CCceeeeecCCCChHHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSNDYG-----TNRILHHTIGLPDFTQE 148 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~-----~~~~~~~~~~~~~~~d~ 148 (431)
+.-+|.|.+.... +.+|++ |=|.. -.+..+..|...+.|+++|.-+....... ..... ..+. ..|.
T Consensus 413 ~l~~A~G~a~a~~~~~vv~~~--GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~-~~~~---~~d~ 486 (552)
T 1ovm_A 413 TLAAAFGAQTACPNRRVIVLT--GDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY-NDIA---LWNW 486 (552)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE--EHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG-GCCC---CCCG
T ss_pred HHHHHHHHHHhCCCCcEEEEE--CchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCc-ccCC---CCCH
Confidence 3445556555442 444443 66655 24678888889999988887654322111 00000 0011 1245
Q ss_pred HHHHhhhee----eEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 149 LRCFQAITC----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 149 ~~~~~~~~k----~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
..+++.+.- ...++++++++ ++|++.+....||+.|++..+
T Consensus 487 ~~~a~a~G~~~~~~~~~v~~~~~l----~~al~~a~~~~gp~liev~~~ 531 (552)
T 1ovm_A 487 THIPQALSLDPQSECWRVSEAEQL----ADVLEKVAHHERLSLIEVMLP 531 (552)
T ss_dssp GGSTTTSCSSCCEEEEEECBHHHH----HHHHHHHTTCSSEEEEEEECC
T ss_pred HHHHHHhCCCcCCCEEEeCCHHHH----HHHHHHHHhCCCCEEEEEEcC
Confidence 566666654 56778776655 455555556679999998866
No 109
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=54.47 E-value=37 Score=27.73 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCC--EEEeCCccchh-----------chHHHHHHHHHHhCCCeEecC---CCcccCCC------
Q 014091 221 LEAAVEATADFLNKAVKP--VLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPE------ 278 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rp--vI~~G~g~~~~-----------~a~~~l~~lae~~~~Pv~tt~---~gkg~~~~------ 278 (431)
....++-+..+++..... |++.+.|+... +-.+.+.+|++..+++++.-. ..+|+.++
T Consensus 29 a~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q~p~~~~~~l~~~~~~La~~~gv~l~vC~~~a~~RGi~~~~~a~~~ 108 (140)
T 2d1p_A 29 ASSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRL 108 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTTSCCHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCEEEEechHHHHHhcCCCCccccCChHHHHHHHHHHcCCEEEEeHHHHHHcCCCchhhhhhc
Confidence 455677777777665544 67888888532 245678889999999987754 35788765
Q ss_pred ---CCCCcceeecCCCCCHHHHHHhhhCCEEEEe
Q 014091 279 ---HHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (431)
Q Consensus 279 ---~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~l 309 (431)
.+.+..|. -+.+-....+++.++|-||.+
T Consensus 109 ~~~~~~L~~g~--~i~gl~~L~~~~~~aDrVitF 140 (140)
T 2d1p_A 109 GLASSNLQQGF--TLSGLGALAEASLTCDRVVQF 140 (140)
T ss_dssp TCSCCCBCTTE--EEECTHHHHHHHHHSSEEEEC
T ss_pred ccccccccCCe--EEcCHHHHHHHHHhCCEEEeC
Confidence 12454554 234556788899999999874
No 110
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=53.92 E-value=9.8 Score=38.94 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHhhhhhhhhcC--ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC-----CceeeeecCCCChHHH
Q 014091 77 AGYAADGYARSRG--VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT-----NRILHHTIGLPDFTQE 148 (431)
Q Consensus 77 A~~~A~gyar~tg--~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~-----~~~~~~~~~~~~~~d~ 148 (431)
+.-+|.|.+.... +.+|+ .|=|... .+..|..|...+.|+++|.-+.......+ +... ..+.. .|.
T Consensus 430 ~l~~A~Gaala~~~~~vv~~--~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~-~~~~~---~d~ 503 (570)
T 2vbf_A 430 TFPAALGSQIADKESRHLLF--IGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSY-NDIPM---WNY 503 (570)
T ss_dssp HHHHHHHHHHHCTTSEEEEE--EEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG-GCCCC---CCG
T ss_pred hHHHHHHHHHhCCCCcEEEE--EcchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCc-cCCCC---CCH
Confidence 3445556655543 34444 3666553 46788889999999888876543221100 0000 01111 244
Q ss_pred HHHHhhheee-----EEEcCCcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 149 LRCFQAITCS-----QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 149 ~~~~~~~~k~-----~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
..+++.+--. ..++++++++.+.+++| +....||+.|++..+
T Consensus 504 ~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a---~~~~~~p~liev~~~ 550 (570)
T 2vbf_A 504 SKLPETFGATEDRVVSKIVRTENEFVSVMKEA---QADVNRMYWIELVLE 550 (570)
T ss_dssp GGHHHHTTCCTTTEEEEEECBHHHHHHHHHHH---HHCTTSEEEEEEECC
T ss_pred HHHHHHcCCCcCCcceEEecCHHHHHHHHHHH---HhcCCCcEEEEEEcC
Confidence 5556665322 67888776665555543 344579999998866
No 111
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=53.64 E-value=8.2 Score=39.50 Aligned_cols=107 Identities=10% Similarity=-0.026 Sum_probs=61.4
Q ss_pred HHHhhhhhhhhc-C-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCcccC----CCceeeeecCCCChHHHH
Q 014091 77 AGYAADGYARSR-G-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYG----TNRILHHTIGLPDFTQEL 149 (431)
Q Consensus 77 A~~~A~gyar~t-g-~gv~~~t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~~----~~~~~~~~~~~~~~~d~~ 149 (431)
+.-+|.|.+... + +.+|+ .|=|... .+..|..|...+.|+++|.-.......- ..... ..+. ..|..
T Consensus 427 ~l~~A~G~ala~~~~~vv~i--~GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~-~~~~---~~d~~ 500 (565)
T 2nxw_A 427 GVPAGIGAQCVSGGKRILTV--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAF-NDLD---DWRFA 500 (565)
T ss_dssp HHHHHHHHHHHTTTCCEEEE--EEHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGG-GBCC---CCCHH
T ss_pred cchHHHHHHHhCCCCcEEEE--EechHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCC-CcCC---CCCHH
Confidence 334466665543 3 44444 3666654 2356777788899988887554321110 00000 0111 13667
Q ss_pred HHHhhheeeEEEcCCcchHHHHHHHHHHHhhhCCCcE-EEEEccC
Q 014091 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV-YISISCN 193 (431)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv-~l~iP~d 193 (431)
.+++.+--...++++++++.+.+ +.+...+||+ .|++..+
T Consensus 501 ~~a~a~G~~~~~v~~~~el~~al----~~a~~~~gp~~liev~~~ 541 (565)
T 2nxw_A 501 DMAAGMGGDGVRVRTRAELKAAL----DKAFATRGRFQLIEAMIP 541 (565)
T ss_dssp HHTGGGTSEEEEECBHHHHHHHH----HHHHHCCSSCEEEEEECC
T ss_pred HHHHHcCCCEEEeCCHHHHHHHH----HHHHhcCCCeEEEEEEcc
Confidence 88888876777888776655554 4444557888 9988765
No 112
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=53.02 E-value=16 Score=32.63 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcC--CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcc
Q 014091 222 EAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~--rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 274 (431)
+.++-+++++|++.+ ||.+++|.-+-.-++.+.=.+|++..++|.++.-.-||
T Consensus 158 PTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 158 PTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp HHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 467888999997654 89999887665445656666677778899998765554
No 113
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=52.99 E-value=3.4 Score=43.77 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec--CCCcccCCCCCCCcceeecCCCCC
Q 014091 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM--PSGKGLVPEHHPHFIGTYWGAVSS 293 (431)
Q Consensus 222 ~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt--~~gkg~~~~~hp~~~G~~~G~~~~ 293 (431)
+++++.+++.|++ .+...++.|.+.......-. .+|++.+|.+-+.+ ....+.........+|. +...+
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~-~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~--~~~~d 157 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTL-RRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGS--YSFAS 157 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHH-HHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSS--CEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHH-HHHHHHcCCCCccCCcccchhHHHHHHHHhcCC--CCCCC
Q ss_pred HHHHHHhhhCCEEEEeCCccCcccc-cccccCCC----CcceEEEcc
Q 014091 294 SFCGEIVESADAYVFVGPIFNDYSS-VGYSLLIK----KEKAIIVQP 335 (431)
Q Consensus 294 ~~~~~~~~~aD~vl~lG~~~~~~~~-~~~~~~~~----~~~~I~Id~ 335 (431)
++++|+||++|+.+.+... ..+..+.+ +.|+|.||+
T Consensus 158 ------~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividP 198 (727)
T 2e7z_A 158 ------FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDP 198 (727)
T ss_dssp ------TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECS
T ss_pred ------cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECC
No 114
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=52.44 E-value=63 Score=27.62 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
.+.+++++++|.+++| +++.|.|....-+.....+| .++|.++...
T Consensus 34 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~ 79 (200)
T 1vim_A 34 LETVGEMIKLIDSARS-IFVIGAGRSGYIAKAFAMRL-MHLGYTVYVV 79 (200)
T ss_dssp HHHHHHHHHHHHHSSC-EEEECSHHHHHHHHHHHHHH-HHTTCCEEET
T ss_pred HHHHHHHHHHHhcCCE-EEEEEecHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 4678999999999876 67778887543333333344 5678887663
No 115
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=52.10 E-value=67 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
.+.+++++++|.++++ +++.|.|.... ....+.....++|.++...
T Consensus 24 ~~~i~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 69 (186)
T 1m3s_A 24 NEEADQLADHILSSHQ-IFTAGAGRSGL-MAKSFAMRLMHMGFNAHIV 69 (186)
T ss_dssp HHHHHHHHHHHHHCSC-EEEECSHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHcCCe-EEEEecCHHHH-HHHHHHHHHHhcCCeEEEe
Confidence 4678999999999876 66778887543 3344444446788887664
No 116
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=52.03 E-value=39 Score=30.40 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeE-ecCCCcccCCCCCCCcceeecCCCCCHHHH
Q 014091 221 LEAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIA-IMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~-tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~ 297 (431)
.-..+..|++.|...+++ ++++|.-- .+.+.+.++|+++|.+.+ +.-.=-|.+- +...
T Consensus 49 T~~~L~~A~~~i~~i~~~~~iLfVgtk~---~~~~~V~~~A~~~g~~yv~~~RWlgG~LT---------------N~~t- 109 (241)
T 2xzm_B 49 TWQKIKLAARVIAAVQHPEDVMVVCSRI---YGQRAAIKFAGYTHCKSTSSSRWTPGTLT---------------NYQT- 109 (241)
T ss_dssp HHHHHHHHHHHHHHCSSGGGEEEECCSH---HHHHHHHHHHHHHTCBCCCCSSCCTTTTT---------------CTTC-
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECCH---HHHHHHHHHHHHhCCEEeccccccCCccc---------------Cccc-
Confidence 345678888888877655 88888632 367889999999998876 4321112222 1100
Q ss_pred HHhhhCCEEEEeCCccC
Q 014091 298 EIVESADAYVFVGPIFN 314 (431)
Q Consensus 298 ~~~~~aD~vl~lG~~~~ 314 (431)
..+...|+|+++..+-+
T Consensus 110 ~~~~~PdlliV~Dp~~e 126 (241)
T 2xzm_B 110 LKYEEPRVLIVTDPRSD 126 (241)
T ss_dssp TTCCCCSEEEESCTTTT
T ss_pred cccCCCCEEEEECCCcc
Confidence 23468999999987654
No 117
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=51.82 E-value=54 Score=29.70 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-+.+.+|++.|..++++ ++++|.-- .+.+.+.++|+++|.+.+..-.=-|.+-. +.- ..
T Consensus 88 ~~~L~~A~~~i~~~~~~~~iLfVgTk~---~aq~~V~~~A~~~g~~yv~~RWlgG~LTN----~~~------------~~ 148 (253)
T 3bch_A 88 WEKLLLAARAIVAIENPADVSVISSRN---TGQRAVLKFAAATGATPIAGRFTPGTFTN----QIQ------------AA 148 (253)
T ss_dssp HHHHHHHHHHHHTCSSGGGEEEEECSH---HHHHHHHHHHHHHCCEEEESCCCTTTTTC----CSC------------ST
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecceecCCcccC----ccc------------cc
Confidence 34577888888765544 77887533 36788999999999998875432233321 110 12
Q ss_pred hhhCCEEEEeCCccC
Q 014091 300 VESADAYVFVGPIFN 314 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~ 314 (431)
+.+.|+|+++..+-+
T Consensus 149 f~~PdlliV~Dp~~e 163 (253)
T 3bch_A 149 FREPRLLVVTDPRAD 163 (253)
T ss_dssp TCSCSEEEESCTTTT
T ss_pred cCCCCEEEEECCCcc
Confidence 468999999987665
No 118
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=51.60 E-value=26 Score=30.02 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
.+.+++++++|.++++-+++.|.|.... ....+.....+++.|+...
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 77 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVFL 77 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEEe
Confidence 4689999999999975688889887543 3444554455688888764
No 119
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.41 E-value=66 Score=29.88 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-+.+..+++.|...+++ ++++|..- .+.+.+.++|+++|.+.++.-.--|.|-. +. ...
T Consensus 59 ~e~L~~Aa~~I~~i~~~~~ILfVgTk~---~aq~aV~k~A~~tG~~yV~~RWlgGtLTN----~~------------t~~ 119 (305)
T 3iz6_A 59 WEKLQLAARVIVAIENPQDIIVQSARP---YGQRAVLKFAQYTGAHAIAGRHTPGTFTN----QL------------QTS 119 (305)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECCSH---HHHHHHHHHHHHHTCEEECSCCCTTTTTT----TT------------TSC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCcH---HHHHHHHHHHHHhCCccccCcccCCcccC----cc------------ccc
Confidence 44677777777765444 78887532 37789999999999988764322233321 11 012
Q ss_pred hhhCCEEEEeCCccCc
Q 014091 300 VESADAYVFVGPIFND 315 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~~ 315 (431)
+.+.|+||++..+-+.
T Consensus 120 f~ePdllvV~Dp~~d~ 135 (305)
T 3iz6_A 120 FSEPRLLILTDPRTDH 135 (305)
T ss_dssp SSCCSEEEESCTTTTH
T ss_pred ccCCceeEEeCcccch
Confidence 5789999999877653
No 120
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=51.02 E-value=69 Score=27.08 Aligned_cols=83 Identities=17% Similarity=0.025 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcC---CCceEEecCchhHHHHhhhhhhhhc-C-ccEEEEeCCcchH
Q 014091 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSR-G-VGACVVTFTVGGL 102 (431)
Q Consensus 28 ~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~---~~i~~v~~~hE~~A~~~A~gyar~t-g-~gv~~~t~GpG~~ 102 (431)
..++.|++.+...|+=|+||. |....-..+++.+. ++..-+. + ...++ + ..+++.+| |.-
T Consensus 26 ~AA~llaqai~~~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~---~---------~~~i~~~D~vii~S~S--g~n 90 (170)
T 3jx9_A 26 DVVRLLAQALVGQGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK---D---------HKTLHAVDRVLIFTPD--TER 90 (170)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC---T---------TCCCCTTCEEEEEESC--SCC
T ss_pred HHHHHHHHHHhCCCEEEEECC-CcHHHHHHHHHcccCCccchhhhh---h---------cCCCCCCCEEEEEeCC--CCC
Confidence 478999999999999999995 44333333455443 2232221 1 11333 2 34444444 333
Q ss_pred H-HHHHHHHhhhcCCcEEEEeCCC
Q 014091 103 S-VLNAIAGAYSENLPVICIVGGP 125 (431)
Q Consensus 103 n-~~~gl~~A~~~~~Pvl~I~g~~ 125 (431)
. .+--...|+.-++|+|+||...
T Consensus 91 ~~~ie~A~~ake~G~~vIaITs~~ 114 (170)
T 3jx9_A 91 SDLLASLARYDAWHTPYSIITLGD 114 (170)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcc
Confidence 3 5666778999999999999843
No 121
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=50.78 E-value=41 Score=26.17 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=59.3
Q ss_pred CEEE--eCCccchh-chHHHHHHHHHHhCCCeEecCCCc-ccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCcc
Q 014091 238 PVLV--GGPNIRVA-KAQKAFIELADATGYPIAIMPSGK-GLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313 (431)
Q Consensus 238 pvI~--~G~g~~~~-~a~~~l~~lae~~~~Pv~tt~~gk-g~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~ 313 (431)
.+.+ ++.|..+. =+.+.|++.|+++|+.+-....|- |+- +++ -.+.+++||+||+....-
T Consensus 5 ivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~---n~L-------------t~~~I~~AD~VIia~d~~ 68 (106)
T 2m1z_A 5 IIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIE---NEL-------------TEKDVNIGEVVIFAVDTK 68 (106)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEES---SCC-------------CHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCcccc---CCC-------------CHHHHhhCCEEEEecccc
Confidence 3445 46666543 468999999999999987755542 211 111 124568999999987432
Q ss_pred -CcccccccccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHHhc
Q 014091 314 -NDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 314 -~~~~~~~~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~ 363 (431)
.+.. . | .+.++++++.... +. |.+.+|+...+.+.
T Consensus 69 v~~~~--R---F-~gk~v~~~~v~~~-i~--------~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 69 VRNKE--R---F-DGKVVLEVPVSAP-IK--------DAEKVINAALALID 104 (106)
T ss_dssp CSTHH--H---H-TTSEEEEECTTHH-HH--------CHHHHHHHHHHHHT
T ss_pred ccchh--c---c-CCCcEEEEcHHHH-HH--------CHHHHHHHHHHHHh
Confidence 1211 1 1 3667888877652 22 66777777766554
No 122
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=50.57 E-value=35 Score=26.81 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCccch-hchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccC-cccccc
Q 014091 243 GPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN-DYSSVG 320 (431)
Q Consensus 243 G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~-~~~~~~ 320 (431)
..|..+ +-+.+.|++-|+++|+.+-....|- .|.- .... .+-+++||+||+.+..-. +.. .
T Consensus 15 ptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~Lt----~~~I~~Ad~VIiA~d~~v~~~~--R 77 (111)
T 2kyr_A 15 PMGLAHTFMAAQALEEAAVEAGYEVKIETQGA----------DGIQ-NRLT----AQDIAEATIIIHSVAVTPEDNE--R 77 (111)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSSEEEEEEEET----------TEEE-SCCC----HHHHHHCSEEEEEESSCCTTGG--G
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC----------CCcC-CCCC----HHHHHhCCEEEEEeCCCcCchh--h
Confidence 445543 4578999999999999988865542 1221 1111 245789999999986543 222 1
Q ss_pred cccCCCCcceEEEccCceeecCCCccccccHHHHHHHHHHHh
Q 014091 321 YSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (431)
Q Consensus 321 ~~~~~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l 362 (431)
+.+.++++++.+.. +. |++.+|++..+.+
T Consensus 78 ----F~GK~v~~~~v~~a-i~--------~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 78 ----FESRDVYEITLQDA-IK--------NAAGIIKEIEEMI 106 (111)
T ss_dssp ----GTTSCEEEEETTHH-HH--------SHHHHHHHHHHHH
T ss_pred ----cCCCeEEEeCHHHH-HH--------CHHHHHHHHHHHH
Confidence 24678888877654 11 5677777765544
No 123
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=49.43 E-value=58 Score=33.88 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=53.4
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcC--Cc
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVN--NL 165 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~--~~ 165 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. .+..+ ..|...+|+.+--... ++. ++
T Consensus 153 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vdG~d~ 225 (651)
T 2e6k_A 153 TYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGP---TDLAF----TEDVLARYRAYGWQTLRVEDVNDL 225 (651)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEE---GGGTC----CSCHHHHHHHTTCEEEEESCTTCH
T ss_pred EEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccccc---ccccc----CccHHHHHHhCCCeEEEEeCCCCH
Confidence 34445888776 45678888889998 777775443221111 11111 1356778887743333 454 44
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
++ +.+|++.|....+|+.|.+--..
T Consensus 226 ~~----l~~al~~a~~~~~P~lI~~~t~k 250 (651)
T 2e6k_A 226 EA----LRKAIKLAKLDERPTLIAVRSHI 250 (651)
T ss_dssp HH----HHHHHHHHHHSSSCEEEEEECCT
T ss_pred HH----HHHHHHHHHHCCCCEEEEEEeEe
Confidence 44 45555555556799999987654
No 124
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=48.44 E-value=31 Score=29.02 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
.+.+++++++|.+++| +++.|.|.... ....+.....++|.++..-.
T Consensus 26 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~~ 72 (187)
T 3sho_A 26 PEAIEAAVEAICRADH-VIVVGMGFSAA-VAVFLGHGLNSLGIRTTVLT 72 (187)
T ss_dssp HHHHHHHHHHHHHCSE-EEEECCGGGHH-HHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCchHH-HHHHHHHHHHhcCCCEEEec
Confidence 5679999999999975 77778887543 44555555567888876643
No 125
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=47.94 E-value=73 Score=33.90 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchh-chHHHHHHHHHHhCCCeEecCC-C-------cccCCCCC-CC-----cceee
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIELADATGYPIAIMPS-G-------KGLVPEHH-PH-----FIGTY 287 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~-~a~~~l~~lae~~~~Pv~tt~~-g-------kg~~~~~h-p~-----~~G~~ 287 (431)
+.+.++++.|.++++++|+.|.+.... .+......|+...|.-+..-.. + .|.+|... .. .-++|
T Consensus 488 e~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~~~~l~g~~G~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~gikal~ 567 (783)
T 3i9v_3 488 EMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAY 567 (783)
T ss_dssp HHHHHHHHHHHHCSSCEEEECSHHHHCHHHHHHHHHHHHHTTCCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCCCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECchhhhcHHHHHHHHHHhcccCCCeeeccCcchhhhhhhcCCCCCchhhhhhcCCCeEEE
Confidence 467889999999999999999987543 3334445588888865543221 1 13343221 00 11222
Q ss_pred cCCCCCHHHHHHhhhCCEEEEeCCccCccc
Q 014091 288 WGAVSSSFCGEIVESADAYVFVGPIFNDYS 317 (431)
Q Consensus 288 ~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~ 317 (431)
-+..++... |+..|++++++..+++..
T Consensus 568 -v~g~np~~~--L~~~~fvVv~d~~~t~ta 594 (783)
T 3i9v_3 568 -YGFVPPEEA--LKGKRFVVMHLSHLHPLA 594 (783)
T ss_dssp -ESSCCCHHH--HTTCSEEEECCSSCCTTT
T ss_pred -EeCCCHHHH--HhhCCEEEEEeCcCCchh
Confidence 223343332 889999999998876543
No 126
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=47.63 E-value=7 Score=28.53 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=37.1
Q ss_pred CCcccHHHHHH------HHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHh
Q 014091 24 ASVGTLGRHLA------RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYA 80 (431)
Q Consensus 24 ~~~~~~a~~l~------~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~ 80 (431)
+++++++|++. +.|.++|++ ++|+|.+...+|-+++... ++..=....|.++...
T Consensus 4 t~d~tI~eIv~~~P~~~~vf~~~G~~-C~gC~~a~~~tLeeA~~~h-giD~d~ll~eLn~~i~ 64 (76)
T 2k53_A 4 TKDMIIADVLQMDRGTAPIFINNGMH-CLGCPSSMGESIEDACAVH-GIDADKLVKELNEYFE 64 (76)
T ss_dssp CTTSBHHHHHHHCGGGHHHHHHTTCC-CCSSCCCCCSBHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCHHHHHHHHHcCCC-CCCCCccccccHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 35678888765 789999999 9999977777788887653 4543333344444433
No 127
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=47.04 E-value=90 Score=26.26 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhc-----CCCceEEecCchhHHHH--h-hhhhh--------hhcC-
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNAGY--A-ADGYA--------RSRG- 89 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~-----~~~i~~v~~~hE~~A~~--~-A~gya--------r~tg- 89 (431)
..+.+++.|.+.+-=++||+-++.... +...|.. ..+++.+....+.+... . -.+|. ..-+
T Consensus 30 ~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~ 109 (196)
T 2yva_A 30 AAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHA 109 (196)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCC
Confidence 457788888888877888886665443 2222331 24666655442221100 0 11221 1123
Q ss_pred ccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 014091 90 VGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 90 ~gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
--++++.|..|-+ +.+..+..|+..++++|.||+....
T Consensus 110 ~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 3466666666665 7889999999999999999987543
No 128
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.54 E-value=18 Score=28.20 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=28.4
Q ss_pred cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 235 a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
-.|.+++++.|..++-..+.+++.|+..|+++-..
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~ 40 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN 40 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 34678889999877667899999999999997553
No 129
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=46.49 E-value=6.8 Score=41.78 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCCccchhchHHHHHHHH-HHhCCCeEecCC---CcccCCCCCCCcceeecC--
Q 014091 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELA-DATGYPIAIMPS---GKGLVPEHHPHFIGTYWG-- 289 (431)
Q Consensus 222 ~~~~~~~~~~L~~------a~rpvI~~G~g~~~~~a~~~l~~la-e~~~~Pv~tt~~---gkg~~~~~hp~~~G~~~G-- 289 (431)
+++++.+++.|++ .+...++.| +... -.+.+|+ +.+|.+-+.+.. ..+.-.......+|...+
T Consensus 118 deAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~e----~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 192 (765)
T 2vpz_A 118 EEALDHIAKKMLEIREKYGPEAIAFFGH-GTGD----YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGH 192 (765)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGCEEEEC-STTH----HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEcC-CCcH----HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCCCCCC
Q ss_pred CCCCHHHHHHhhhCCEEEEeCCccCcccc-cccccCC----CCcceEEEcc
Q 014091 290 AVSSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQP 335 (431)
Q Consensus 290 ~~~~~~~~~~~~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~I~Id~ 335 (431)
...+ ++++|+||++|+.+.+... ..+..+. ++.|+|.||+
T Consensus 193 ~~~d------~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividP 237 (765)
T 2vpz_A 193 EPID------WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDP 237 (765)
T ss_dssp CCCC------GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred Cccc------cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECC
No 130
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=46.00 E-value=66 Score=33.65 Aligned_cols=91 Identities=22% Similarity=0.185 Sum_probs=52.9
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcC---C
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVN---N 164 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~---~ 164 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. ....+ ..|....|+.+--... +++ +
T Consensus 151 vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vdG~~d 223 (680)
T 1gpu_A 151 TYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGA---TSISF----DEDVAKRYEAYGWEVLYVENGNED 223 (680)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CCCHHHHHHHHTCEEEEESCTTTC
T ss_pred EEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEecc---ccccc----CccHHHHHHhcCCeEEEEecCCCC
Confidence 34445888776 44667778888988 777775433221111 00011 1356778887743333 554 4
Q ss_pred cchHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 165 LGDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 165 ~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
+++ +.+|++.|.. ..||+.|.+--..
T Consensus 224 ~~~----l~~al~~A~~~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 224 LAG----IAKAIAQAKLSKDKPTLIKMTTTI 250 (680)
T ss_dssp HHH----HHHHHHHHHHCTTSCEEEEEECCT
T ss_pred HHH----HHHHHHHHHHCCCCCEEEEEEeec
Confidence 444 4555665655 5799999987654
No 131
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=45.85 E-value=59 Score=33.92 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=52.7
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcC--Cc
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVN--NL 165 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~--~~ 165 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. ....+ ..|...+|+.+--... +++ ++
T Consensus 149 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vdG~d~ 221 (669)
T 2r8o_A 149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH---VEGWF----TDDTAMRFEAYGWHVIRDIDGHDA 221 (669)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CCCHHHHHHHTTCEEEEEEETTCH
T ss_pred EEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEeccc---ccccc----CccHHHHHHHCCCeEEeEECCCCH
Confidence 34445888876 45678888889988 777765443221111 00011 2356778887743232 444 44
Q ss_pred chHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
++ |.+|++.|.. ..+|+.|.+-..-
T Consensus 222 ~~----l~~al~~a~~~~~~P~lI~~~T~k 247 (669)
T 2r8o_A 222 AS----IKRAVEEARAVTDKPSLLMCKTII 247 (669)
T ss_dssp HH----HHHHHHHHHHCCSSCEEEEEECCT
T ss_pred HH----HHHHHHHHHhcCCCCEEEEEEeEe
Confidence 44 4555555555 4799999987554
No 132
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=45.71 E-value=73 Score=29.54 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rp--vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
-..+.+++++|...+++ ++++|.- . .+.+.+.++|+++|.+.+..-.=-|.+-. +.- ..
T Consensus 55 ~~~L~~A~~~i~~i~~~~~ILfVgTk--~-~aq~~V~k~A~~~g~~yv~~RWlgG~LTN----~~t------------~~ 115 (295)
T 2zkq_b 55 WEKLLLAARAIVAIENPADVSVISSR--N-TGQRAVLKFAAATGATPIAGRFTPGTFTN----QIQ------------AA 115 (295)
T ss_dssp HHHHHHHHHHHHHSSCGGGEEEEECS--H-HHHHHHHHHHHHHCCEEEESSCCCC-CCC----TTC------------SS
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCc--H-HHHHHHHHHHHHhCCceecceEecccccC----ccc------------cc
Confidence 45677788888765544 7888753 2 36788999999999988774332233321 111 12
Q ss_pred hhhCCEEEEeCCccC
Q 014091 300 VESADAYVFVGPIFN 314 (431)
Q Consensus 300 ~~~aD~vl~lG~~~~ 314 (431)
+.+.|+||++..+-+
T Consensus 116 f~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 116 FREPRLLVVTDPRAD 130 (295)
T ss_dssp CCCCSEEEESCTTTT
T ss_pred ccCCCeEEEeCCCcc
Confidence 468999999987665
No 133
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=45.18 E-value=14 Score=33.51 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchh
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVA 249 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~ 249 (431)
+.+++++++|+++++.||++|.|+..+
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~~ 29 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISAE 29 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSCC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhHh
Confidence 458899999999999999999999653
No 134
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=43.96 E-value=19 Score=38.39 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEe--C---CccchhchHHHHHHHHHHhCCCeEecC-CCcccCCCCCCCcceeecC
Q 014091 221 LEAAVEATADFLNKAV-----KPVLVG--G---PNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWG 289 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----rpvI~~--G---~g~~~~~a~~~l~~lae~~~~Pv~tt~-~gkg~~~~~hp~~~G~~~G 289 (431)
-+++++.+++.|++.+ .-+.+. | .+. .......+.+|+..+|..+-+.. ..-+.-..-.+..+|.. .
T Consensus 86 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~-~~~~~~~~~~f~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~-~ 163 (780)
T 1eu1_A 86 WDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGR-LHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTL-E 163 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCS-SCCHHHHHHHHHHHHTCCBEEESCSSSTTHHHHHHHHTSSC-C
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEecccCCccccc-ccchhHHHHHHHHhcCCCcCCCCCcccchhhhccCceeccc-c
Confidence 5678888888886532 223321 1 121 12245667889999886432210 01000000011223321 1
Q ss_pred CCC-CHHHHHHhhhCCEEEEeCCccCccccccc--------ccC----CCCcceEEEccCcee
Q 014091 290 AVS-SSFCGEIVESADAYVFVGPIFNDYSSVGY--------SLL----IKKEKAIIVQPHRVT 339 (431)
Q Consensus 290 ~~~-~~~~~~~~~~aD~vl~lG~~~~~~~~~~~--------~~~----~~~~~~I~Id~d~~~ 339 (431)
..+ .......++++|+||++|+...+.....+ ..+ .++.|+|.||+....
T Consensus 164 ~~~~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ 226 (780)
T 1eu1_A 164 VYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTE 226 (780)
T ss_dssp TTSCCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCH
T ss_pred ccCCCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCC
Confidence 111 11222357899999999988754321111 001 136799999977543
No 135
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=43.89 E-value=1.1e+02 Score=25.23 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+.+.+++++++|.++++ +++.|.|.... ....+.....++|.++...
T Consensus 26 ~~~~i~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAKK-IFIFGVGRSGY-IGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHHHCSS-EEEECCHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHHHhCCE-EEEEeecHHHH-HHHHHHHHHHHcCCeEEEe
Confidence 45689999999999875 67778887543 3344444445688887764
No 136
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=42.80 E-value=33 Score=30.19 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcC-CCEEEeCCccchhchHHHHHHHHHH-hCCCeEecCCCcc
Q 014091 221 LEAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKG 274 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-rpvI~~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg 274 (431)
.+.++-+++++|++.+ ||.+++|.-+-.-++.+.=.+|.+. .++|.++.-.-||
T Consensus 140 APTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 140 APTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp CHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred cHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 3567889999999766 9999988766544555555556663 7999998765554
No 137
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=42.18 E-value=27 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCC-EEEeCCccchhchHHHHHHHHHHhCCCeEecCC
Q 014091 236 VKP-VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 236 ~rp-vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
+-| +|+.|+.- -.+++.++|+..++||+.|..
T Consensus 74 ~~~~iIlt~g~~----~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 74 NVRCLILTGNLE----PVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp TEEEEEEETTCC----CCHHHHHHHHHHTCCEEECSS
T ss_pred CCcEEEEcCCCC----CCHHHHHHHHHCCCeEEEECC
Confidence 444 55565533 347788999999999999875
No 138
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=41.41 E-value=43 Score=28.19 Aligned_cols=33 Identities=12% Similarity=-0.081 Sum_probs=28.5
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
+++.++.+.+...+.|+++||+|=.++-+.+=.
T Consensus 11 gs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~ 43 (163)
T 3ors_A 11 GSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRT 43 (163)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCC
Confidence 346789999999999999999999999996543
No 139
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=40.76 E-value=34 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 219 LGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 219 ~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
...++.+++++++|+++++.|++.|.|+..
T Consensus 28 ~~l~~~i~~l~~~i~~a~~ivvlTGAGISt 57 (318)
T 3k35_A 28 EELERKVWELARLVWQSSSVVFHTGAGIST 57 (318)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECGGGSG
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeccccCh
Confidence 445778999999999999999999999854
No 140
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=40.52 E-value=4.3 Score=43.64 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=28.6
Q ss_pred HhhhCCEEEEeCCccCcccccccccC------CCCcceEEEccCceee
Q 014091 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVTV 340 (431)
Q Consensus 299 ~~~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~I~Id~d~~~~ 340 (431)
-++++|+||++|+...+.....|..+ .++.|+|.||+.....
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~t 222 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRC 222 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGG
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCch
Confidence 36899999999998754433222211 2578999999876644
No 141
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=40.29 E-value=30 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=31.7
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHcCCC
Q 014091 8 GSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAK 43 (431)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~ 43 (431)
||.|.+++.|.++.-.-+...+++.|-+.|..++|.
T Consensus 1 ~~~~~~~~~p~~~~~~ldTk~I~~~ike~L~~~~is 36 (101)
T 1x2l_A 1 GSSGSSGAGPGAEEEQLDTAEIAFQVKEQLLKHNIG 36 (101)
T ss_dssp CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcccCCCCCCcCccCHHHHHHHHHHHHHHcCCC
Confidence 789999999999977677788889999999999985
No 142
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=40.09 E-value=78 Score=33.30 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=53.3
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEE-cCCcch
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV-VNNLGD 167 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~-v~~~~~ 167 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. .+..+ ..|....|+.+--...+ +. ..+
T Consensus 190 vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vd-G~d 261 (711)
T 3uk1_A 190 TYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGD---VVNWF----HDDTPKRFEAYGWNVIPNVN-GHD 261 (711)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CCCHHHHHHHTTCEEEEEEE-TTC
T ss_pred EEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccc---hhhhc----CCCHHHHHHHcCCcEEEEeC-CCC
Confidence 33345888886 45688899999999 777764432221110 11111 13567788887433344 42 222
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 168 AHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 168 ~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
+ +.|.+|++.|....+|+.|.+.-..
T Consensus 262 ~-~~l~~Al~~A~~~~~P~lI~v~T~k 287 (711)
T 3uk1_A 262 V-DAIDAAIAKAKRSDKPSLICCKTRI 287 (711)
T ss_dssp H-HHHHHHHHHHTTCSSCEEEEEEC--
T ss_pred H-HHHHHHHHHHHhCCCCEEEEEcccc
Confidence 2 3456666666666799999987543
No 143
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=39.56 E-value=70 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCC----EEEecCCCchHHHHH-hhhc
Q 014091 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (431)
Q Consensus 31 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~-al~~ 62 (431)
+--.+.|+++|++ .+|-+||...+|+.- .|.+
T Consensus 30 ~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 66 (158)
T 1di0_A 30 KSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR 66 (158)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 3445888999986 699999999999874 4443
No 144
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=39.36 E-value=36 Score=32.55 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 219 LGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 219 ~~~~~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
...++.+++++++|+++++.|++.|.|+..
T Consensus 28 ~~l~~~i~~la~~i~~a~~iVvlTGAGISt 57 (355)
T 3pki_A 28 EELERKVWELARLVWQSSSVVFHTGAGIST 57 (355)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEECGGGSG
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeccccch
Confidence 456788999999999999999999999854
No 145
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=39.32 E-value=1.2e+02 Score=31.61 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=52.6
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE--Ec---C
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA--VV---N 163 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~--~v---~ 163 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+.- ...+ ..|....|+.+- |.. ++ .
T Consensus 151 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~---~~~~----~~d~~~~~~a~G-~~~~~~vdG~~ 222 (673)
T 1r9j_A 151 TYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGST---SLSF----TEQCHQKYVAMG-FHVIEVKNGDT 222 (673)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBG---GGTC----CCCHHHHHHHTT-CEEEEESCTTT
T ss_pred EEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccch---hhcc----CHhHHHHHHHCC-CeEEEEeCCCC
Confidence 34445778775 24667788888988 7777654433222111 0011 235677888774 443 44 3
Q ss_pred CcchHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 164 NLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 164 ~~~~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
+++ .|.+|++.|.. ..+|+.|.+.-..
T Consensus 223 d~~----~l~~Al~~A~~~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 223 DYE----GLRKALAEAKATKGKPKMIVQTTTI 250 (673)
T ss_dssp CHH----HHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred CHH----HHHHHHHHHHHcCCCCEEEEEeccc
Confidence 444 44556666655 5699999987554
No 146
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=39.25 E-value=1.2e+02 Score=31.71 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=53.7
Q ss_pred eCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchHHHH
Q 014091 96 TFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHEL 171 (431)
Q Consensus 96 t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~ 171 (431)
..|=|.++ ..-++..|-..+.| +|+|.-+......+. .+... ..|...+|+.+--...++.+..++ +.
T Consensus 178 i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~v~DG~d~-~~ 249 (690)
T 3m49_A 178 ICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGD---LNRSF----SESVEDRYKAYGWQVIRVEDGNDI-EA 249 (690)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSB---GGGTC----CCCHHHHHHHHTCEEEEESCTTCH-HH
T ss_pred EECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccc---hhhcc----chhHHHHHHHcCCcEEEEecCCCH-HH
Confidence 34788775 45678888888988 666654332221111 11111 235678888885445566333333 33
Q ss_pred HHHHHHHhhh-CCCcEEEEEccCC
Q 014091 172 IDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 172 i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
|.+|++.|.. ..+|+.|.+--..
T Consensus 250 l~~Al~~a~~~~~~P~lI~v~T~k 273 (690)
T 3m49_A 250 IAKAIEEAKADEKRPTLIEVRTTI 273 (690)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECCT
T ss_pred HHHHHHHHHhcCCCCEEEEEEeec
Confidence 4567777776 5799999987543
No 147
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=39.18 E-value=71 Score=32.96 Aligned_cols=91 Identities=18% Similarity=0.102 Sum_probs=48.9
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcchH
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA 168 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~ 168 (431)
+++..|=|.++ ..-++..|-..+.| +++|.-+......+. .. .. ....|...+|+.+--...+++ ..+
T Consensus 147 vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~---~~--~~-~~~~~~~~~~~a~G~~~~~Vd-G~d- 218 (616)
T 3mos_A 147 VYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDP---AP--LQ-HQMDIYQKRCEAFGWHAIIVD-GHS- 218 (616)
T ss_dssp EEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSB---CT--TT-TCHHHHHHHHHHTTCEEEEEE-TTC-
T ss_pred EEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCC---cc--cc-cChHHHHHHHHHcCCeEEEEc-CCC-
Confidence 33345777775 44577788888998 444543222111111 00 00 113467788888854445563 122
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 169 HELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 169 ~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
.+.+.+|++.+ ..+|+.|.+--.
T Consensus 219 ~~~l~~al~~~--~~~P~lI~v~T~ 241 (616)
T 3mos_A 219 VEELCKAFGQA--KHQPTAIIAKTF 241 (616)
T ss_dssp HHHHHHHHHSC--CSSCEEEEEECC
T ss_pred HHHHHHHHHhc--CCCCEEEEEEEe
Confidence 23345555544 468999998754
No 148
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=39.15 E-value=17 Score=38.98 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEe--C---CccchhchHHHHHHHHHHhCCCeEecC-CCcccCCCCCCCcceeecC
Q 014091 221 LEAAVEATADFLNKAV-----KPVLVG--G---PNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWG 289 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----rpvI~~--G---~g~~~~~a~~~l~~lae~~~~Pv~tt~-~gkg~~~~~hp~~~G~~~G 289 (431)
-+++++.+++.|++.+ ..+.+. | .+. .......+.+|+..+|..+-+.. ..-+..-...+..+|.. .
T Consensus 119 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~g~~~~g~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~-~ 196 (829)
T 1tmo_A 119 WDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQ-LHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGST-E 196 (829)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEECCCCCCCCSCT-TTCHHHHHHHHHHTTCCCBEEECCSSSTTHHHHHHHHTSSC-C
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEeccccCccccc-ccchhHHHHHHHHhcCCcccCCCCcchhhhhhcccceEecc-c
Confidence 5678888888887542 234331 1 121 12344667889998886432211 11110000011222321 1
Q ss_pred CCC-CHHHHHHhhhCCEEEEeCCccCccccccc-----------cc-CC---CCc-ceEEEccCcee
Q 014091 290 AVS-SSFCGEIVESADAYVFVGPIFNDYSSVGY-----------SL-LI---KKE-KAIIVQPHRVT 339 (431)
Q Consensus 290 ~~~-~~~~~~~~~~aD~vl~lG~~~~~~~~~~~-----------~~-~~---~~~-~~I~Id~d~~~ 339 (431)
..+ .....+.++++|+||++|+...+.....| .. .. ++. |+|.||+....
T Consensus 197 ~~~~~~~~~~~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ 263 (829)
T 1tmo_A 197 VYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTK 263 (829)
T ss_dssp TTSCCCCHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCH
T ss_pred ccCCCCchHhhHhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCC
Confidence 111 11223347899999999988753322111 11 11 356 89999987543
No 149
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=38.83 E-value=21 Score=38.56 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEeCCcc---ch-hchHHHHHHHHHHhCCCeEecC-CCcccCCC-----CCCCc-c
Q 014091 221 LEAAVEATADFLNKAV-----KPVLVGGPNI---RV-AKAQKAFIELADATGYPIAIMP-SGKGLVPE-----HHPHF-I 284 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~-----rpvI~~G~g~---~~-~~a~~~l~~lae~~~~Pv~tt~-~gkg~~~~-----~hp~~-~ 284 (431)
-+++++.+++.|++.+ ..+.+.+.+. .. ......+.+|+..+|.+-+... ...+.+.. -.+.. +
T Consensus 114 WdeAl~~iA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~rf~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 193 (875)
T 1ti6_A 114 WDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRL 193 (875)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHHHHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHhCcceEEeecCCCcccCcccchhHHHHHHHHhcCCCccccCcCccCccchhhhcccccceee
Confidence 5678888888887632 2355543221 11 1233457889999994422211 11111100 01222 3
Q ss_pred eeecCCCCCHHHHHHhhhCCEEEEeCCccCccccc-c-------cc--cCCCCcceEEEccCce
Q 014091 285 GTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSV-G-------YS--LLIKKEKAIIVQPHRV 338 (431)
Q Consensus 285 G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~-~-------~~--~~~~~~~~I~Id~d~~ 338 (431)
|.. ...+ .....+++||+||++|+.. +.... . +. ...++.|+|.||+...
T Consensus 194 G~~-~~~~--~~~~~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t 253 (875)
T 1ti6_A 194 GNP-EQYD--LLEDGLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMN 253 (875)
T ss_dssp TCC-CCTT--HHHHHHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCC
T ss_pred ecc-cccC--CcHhHHhcCCEEEEECCCh-hhCCccCCCccchHHHHHHHHcCCeEEEECCCCC
Confidence 421 1111 2333478999999999987 43321 1 00 1124789999998764
No 150
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.74 E-value=63 Score=25.05 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred hhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCC
Q 014091 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (431)
Q Consensus 248 ~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (431)
.+-+.+.|++-|+++|+.+-...+|- .|.- ... -.+-+++||+||+.+....+.. . +.+
T Consensus 18 TymAaeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~--R----F~G 76 (106)
T 2r4q_A 18 TFMAADALKEKAKELGVEIKVETNGS----------SGIK-HKL----TAQEIEDAPAIIVAADKQVEME--R----FKG 76 (106)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEET----------TEEE-SCC----CHHHHHHCSCEEEEESSCCCCG--G----GTT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC----------CCcc-CCC----CHHHHHhCCEEEEEeCCccCHh--H----cCC
Confidence 45678999999999999988866542 2221 111 1245789999999997654422 1 246
Q ss_pred cceEEEccCceeecCCCccccccHHHHHHHH
Q 014091 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSAL 358 (431)
Q Consensus 328 ~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L 358 (431)
.++++++.+.. +. |++.+|++.
T Consensus 77 K~v~~~~v~~a-i~--------~p~~~l~~a 98 (106)
T 2r4q_A 77 KRVLQVPVTAG-IR--------RPQELIEKA 98 (106)
T ss_dssp SBEEEECHHHH-HH--------CHHHHHHHH
T ss_pred CeEEEeCHHHH-HH--------CHHHHHHHH
Confidence 67888876543 11 456666654
No 151
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=38.33 E-value=47 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCC----EEEecCCCchHHHHH-hhhcC
Q 014091 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIAE 63 (431)
Q Consensus 31 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~-al~~~ 63 (431)
+--.+.|+++|++ .+|-+||...+|+.- .|.++
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~ 69 (154)
T 1hqk_A 32 EGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARK 69 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhc
Confidence 3445889999997 799999999999874 44443
No 152
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=37.93 E-value=15 Score=26.48 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=32.6
Q ss_pred CcccHHHHHH------HHHHHcCCCEEEecCCCchHHHHHhhhcCCCce
Q 014091 25 SVGTLGRHLA------RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELN 67 (431)
Q Consensus 25 ~~~~~a~~l~------~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~ 67 (431)
.+++++|++. +.|.++|+ .+||+||.....|-+++... ++.
T Consensus 7 ~d~tI~eiv~~~P~~~~vf~~~G~-~c~~C~~a~~~tL~~Aa~~~-gid 53 (73)
T 2k5e_A 7 KDMTFAQALQTHPGVAGVLRSYNL-GCIGCMGAQNESLEQGANAH-GLN 53 (73)
T ss_dssp SSSBHHHHHHHCTHHHHHHHHTTG-GGGGTTTGGGSBHHHHHHHT-TCC
T ss_pred CCCCHHHHHHHCHHHHHHHHHcCC-CCCCCCccccccHHHHHHHc-CCC
Confidence 5688888664 78999999 58999998888888888753 553
No 153
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=37.88 E-value=80 Score=27.22 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=28.6
Q ss_pred cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 014091 91 GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 91 gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
-++++.|-.|-+ +.+..+..|+..+.++|.||+....
T Consensus 133 DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s 170 (212)
T 2i2w_A 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGG 170 (212)
T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 455555666654 7889999999999999999987543
No 154
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=37.86 E-value=86 Score=32.66 Aligned_cols=93 Identities=20% Similarity=0.108 Sum_probs=52.3
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcch
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGD 167 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~ 167 (431)
+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. .+..+ ..|....|+.+--... ++. ..+
T Consensus 151 v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vd-G~d 222 (663)
T 3kom_A 151 TYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGD---TKGWF----SDNTPERFRAYGWHVIENVD-GHD 222 (663)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----C---GGGTC----CCCHHHHHHHTTCEEEEEEE-TTC
T ss_pred EEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccc---hhhhc----chhHHHHHHHCCCeEEEEEc-CCC
Confidence 33345888885 45588888899998 666654433221111 01011 1356778888742223 453 122
Q ss_pred HHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 168 AHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 168 ~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
+ +.|.+|++.|.. ..+|+.|.+--..
T Consensus 223 ~-~~l~~al~~A~~~~~~P~lI~~~T~k 249 (663)
T 3kom_A 223 F-VAIEKAINEAHSQQQKPTLICCKTVI 249 (663)
T ss_dssp H-HHHHHHHHHHHHCSSSCEEEEEECCT
T ss_pred H-HHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 2 334566777766 5799999987554
No 155
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=37.33 E-value=37 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHH-----HhCCCeEe
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD-----ATGYPIAI 268 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae-----~~~~Pv~t 268 (431)
++.++++++.|.+++| +++.|.|....-+...-.+|.. +.|.|+..
T Consensus 28 ~~~~~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~ 78 (196)
T 2yva_A 28 SRAAMTLVQSLLNGNK-ILCCGNGTSAANAQHFAASMINRFETERPSLPAIA 78 (196)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred HHHHHHHHHHHHcCCE-EEEEeCchhhHHHHHHHHHHhccccccCCCCceEe
Confidence 3788999999999876 6667887754334444444543 45666554
No 156
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=37.02 E-value=18 Score=34.08 Aligned_cols=83 Identities=14% Similarity=0.043 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+++..+.--+|.+|.|. ..+++...|.++++.++++++.-.. .|-...--.-.|. ......++
T Consensus 82 ~ee~~d~I~~~le~~d~~~i~as~GGGTGSG~~~~la~~a~e~g~lt~~vv~----~P~~~Eg~~~~~n---A~~~l~~L 154 (320)
T 1ofu_A 82 ALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVT----RPFPFEGRKRMQI---ADEGIRAL 154 (320)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE----ECCGGGCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHhcCCcEEEEEe----CCccccchhHHHH---HHHHHHHH
Confidence 35567778888888876566665333 2457778899999999876554111 0100000001111 11244567
Q ss_pred hhhCCEEEEeC
Q 014091 300 VESADAYVFVG 310 (431)
Q Consensus 300 ~~~aD~vl~lG 310 (431)
.+.+|++|++-
T Consensus 155 ~e~~D~~ivid 165 (320)
T 1ofu_A 155 AESVDSLITIP 165 (320)
T ss_dssp HTTCSEEEEEE
T ss_pred HHhCCEEEEEe
Confidence 78999999995
No 157
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=36.81 E-value=55 Score=27.71 Aligned_cols=33 Identities=15% Similarity=-0.055 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
+++.++.+++..++.|+++||+|-.++-+.+=.
T Consensus 19 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~ 51 (170)
T 1xmp_A 19 GSTSDWETMKYACDILDELNIPYEKKVVSAHRT 51 (170)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCC
Confidence 456789999999999999999999999986543
No 158
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=35.97 E-value=55 Score=27.80 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=28.8
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
+++.++.+.+...+.|+++||+|-.++-+.+=.
T Consensus 20 GS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~ 52 (174)
T 3kuu_A 20 GSKSDWATMQFAADVLTTLNVPFHVEVVSAHRT 52 (174)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCC
Confidence 556889999999999999999999999996543
No 159
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=35.94 E-value=47 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCC----EEEecCCCchHHHHH-hhhc
Q 014091 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (431)
Q Consensus 31 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~-al~~ 62 (431)
+--.+.|+++|++ .+|-+||...+|+.- .|.+
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1rvv_A 32 SGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE 68 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 3445889999997 799999999999874 4443
No 160
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.58 E-value=92 Score=27.14 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcC-CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh
Q 014091 222 EAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~-rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~ 300 (431)
-+.+..|++.+...+ .-++++|..- .+.+.+.++|+++|.+.++.-.--|.+- +.. .+.+
T Consensus 49 ~~~L~~A~~~i~~~~~~~ilfV~tk~---~~~~~V~k~A~~~g~~~v~~rw~gG~lT---------------N~~-~~~~ 109 (202)
T 3j20_B 49 DERLKVAGKFLAKFEPQSILAVSVRL---YGQKPVKKFGEVTGARAIPGRFLPGTMT---------------NPA-VKNF 109 (202)
T ss_dssp HHHHHHHHHHHHHSCSSCEEEECCCT---TTHHHHHHHHHHHSCCCCCSSCCSSSSS---------------CSS-SSSC
T ss_pred HHHHHHHHHHHHhhCCCeEEEEecCh---HHHHHHHHHHHHHCCceeCceecCCCcc---------------cHh-HHhc
Confidence 445777777777642 3377788633 3778999999999988765322223332 111 1123
Q ss_pred hhCCEEEEeCCccC
Q 014091 301 ESADAYVFVGPIFN 314 (431)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (431)
.+.|+++++..+-+
T Consensus 110 ~~Pdllvv~Dp~~d 123 (202)
T 3j20_B 110 FEPDVLIVTDPRAD 123 (202)
T ss_dssp CCCSEEEESCTTTS
T ss_pred cCCCeEEEeCCccc
Confidence 58999999987665
No 161
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=35.52 E-value=22 Score=29.84 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
++++++.+++...+.|+++||+|-+++-+.+=.
T Consensus 10 gs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~ 42 (159)
T 3rg8_A 10 GSSSDMGHAEKIASELKTFGIEYAIRIGSAHKT 42 (159)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCC
Confidence 446789999999999999999999999996544
No 162
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=35.32 E-value=57 Score=27.94 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
+++.++.+.+..++.|+++||+|-.+|-+.+=.
T Consensus 29 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~ 61 (182)
T 1u11_A 29 GSQSDWETMRHADALLTELEIPHETLIVSAHRT 61 (182)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCC
Confidence 567789999999999999999999999986644
No 163
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.85 E-value=1.4e+02 Score=24.70 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecC---chhHHHHhhhhhhhhcCccEEEEeCCcchH-
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCC---NELNAGYAADGYARSRGVGACVVTFTVGGL- 102 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~---hE~~A~~~A~gyar~tg~gv~~~t~GpG~~- 102 (431)
--+.+++.|.+..-=++||+-++.... +...|.+ -++...... ++.. .-....+.--++++.|-.|-+
T Consensus 28 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~iS~sG~t~ 101 (187)
T 3sho_A 28 AIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNS-LGIRTTVLTEGGSTLT-----ITLANLRPTDLMIGVSVWRYLR 101 (187)
T ss_dssp HHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHH-TTCCEEEECCCTHHHH-----HHHHTCCTTEEEEEECCSSCCH
T ss_pred HHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHh-cCCCEEEecCCchhHH-----HHHhcCCCCCEEEEEeCCCCCH
Confidence 345677888887655666665544332 2223333 244443332 3321 111222223455666666755
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCC
Q 014091 103 SVLNAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 103 n~~~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
+.+..+..|+..++|+|.||+...
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC
Confidence 788888899999999999998653
No 164
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=34.65 E-value=21 Score=34.55 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCC-cceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH-FIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~-~~G~~~G~~~~~~~~~ 298 (431)
.++.++++.+++..+.--+|.+|.|. ..+++...|.++++.++++++.- ++ .|+ +=|..--+-......+
T Consensus 82 aee~~d~Ir~~le~~D~ffI~asmGGGTGSG~apvla~~ake~g~ltvsV------vt--~Pf~~Eg~~r~~nA~l~l~~ 153 (382)
T 2vxy_A 82 AEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGV------VT--RPFTFEGRKRQLQAAGGISA 153 (382)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEESSSSHHHHHHHHHHHHHHHTTCEEEEE------EE--ECCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEEEeccCCCCCCcHHHHHHHHHHHhCCCeEEE------Ee--CCcccccchhHHHHHHHHHH
Confidence 45567788888888876666666443 34678888999999888765541 11 121 1111000001124556
Q ss_pred HhhhCCEEEEeCC
Q 014091 299 IVESADAYVFVGP 311 (431)
Q Consensus 299 ~~~~aD~vl~lG~ 311 (431)
+.+++|++|+|-.
T Consensus 154 L~e~~D~~ividN 166 (382)
T 2vxy_A 154 MKEAVDTLIVIPN 166 (382)
T ss_dssp HHHHCSEEEEEEH
T ss_pred HHHhCCEEEEEcc
Confidence 7789999999963
No 165
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=34.32 E-value=95 Score=29.33 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccch--hchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCC---CCC-HH
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRV--AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGA---VSS-SF 295 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~--~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~---~~~-~~ 295 (431)
...++++.++|+++++.+|+.-..... -++.-.+.++.+++|..+..-..+ -+|+...+.-+. ..+ ... ..
T Consensus 8 ~~~~~~l~~~i~~~~~i~I~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~--~~~~~~~fl~~~-~~i~~~~~~~~~ 84 (343)
T 3dma_A 8 QAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPN--AFPDFLKWMPGS-KDILLYDRYQEF 84 (343)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESS--CCCGGGTTSTTG-GGCEETTTCHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCCEEEECCC--CCchHhhhccCc-chhcccccChHH
Confidence 456888999999998877765443322 346677888999999877654332 234322211111 011 011 12
Q ss_pred HHHHhhhCCEEEEeCCccCccccccccc-CC-CCcceEEEccCce
Q 014091 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-LI-KKEKAIIVQPHRV 338 (431)
Q Consensus 296 ~~~~~~~aD~vl~lG~~~~~~~~~~~~~-~~-~~~~~I~Id~d~~ 338 (431)
+.+.+.+.|++|++-+.-.+... .... +. +..++|.||.++.
T Consensus 85 ~~~~~~~~~lvi~VD~~~~~r~~-~~~~~l~~~~~~~ivIDHH~~ 128 (343)
T 3dma_A 85 ADKLIMEADVICCLDFNALKRID-EMSDIVAASPGRKIMIDHHLY 128 (343)
T ss_dssp HHHHHHHCSEEEEESCSSGGGGT-TCHHHHHHCCSEEEEEECCSS
T ss_pred HhhcccCCCEEEEEeCCChHHhc-hhHHHHHhCCCCEEEEcCCCC
Confidence 33455689999999876443321 1111 11 2346788887664
No 166
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=34.31 E-value=31 Score=31.95 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHh--cCCCEEEeCCccch
Q 014091 222 EAAVEATADFLNK--AVKPVLVGGPNIRV 248 (431)
Q Consensus 222 ~~~~~~~~~~L~~--a~rpvI~~G~g~~~ 248 (431)
+..+++++++|++ +++.||++|.|+..
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt 33 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGIST 33 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeH
Confidence 3568899999999 99999999999964
No 167
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=34.26 E-value=19 Score=34.89 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc-hhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCc-ceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~-~G~~~G~~~~~~~~~ 298 (431)
.++.++++.+++..+.--+|++|.|.. .+++...|.++++.++++++.- ++. |+. =|..--+-......+
T Consensus 82 aee~~d~Ir~~le~~d~~fi~as~GGGTGSG~ap~laela~e~g~ltvsV------v~~--Pf~~Eg~~~~~nA~l~l~~ 153 (382)
T 1rq2_A 82 AEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV------VTR--PFSFEGKRRSNQAENGIAA 153 (382)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEE------EEE--CCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEE------Eec--CcccccchHHHHHHHHHHH
Confidence 455677888888888876677664433 4577788999999999766541 111 111 111000001124556
Q ss_pred HhhhCCEEEEeCC
Q 014091 299 IVESADAYVFVGP 311 (431)
Q Consensus 299 ~~~~aD~vl~lG~ 311 (431)
+.+.+|++|+|-.
T Consensus 154 L~e~~D~~ividN 166 (382)
T 1rq2_A 154 LRESCDTLIVIPN 166 (382)
T ss_dssp HHHHCSEEEEEEH
T ss_pred HHHhCCEEEEEec
Confidence 7789999999963
No 168
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=34.18 E-value=43 Score=28.02 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.+++++++|.++++-++++|.|....-+ +.+.....++|.++..
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a-~~~~~~l~~~g~~~~~ 80 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIG-RKMAATFASTGTPSFF 80 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHH-HHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHH-HHHHHHHHhcCceEEE
Confidence 7999999999998678888988754333 3333333456777654
No 169
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Probab=33.63 E-value=21 Score=33.97 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc-hhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCC-cceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH-FIGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~-~~G~~~G~~~~~~~~~ 298 (431)
.++.++++.+.+..+...+|+.|.|.. .+++...+.++++.+++..+.- +|. |. +=|..--+-......+
T Consensus 78 ~ee~~d~Ir~~~e~~D~l~i~~s~GGGTGSG~~~~ia~l~~e~g~lt~~V------v~~--P~~~eg~~~~ynA~~~l~~ 149 (338)
T 2r75_1 78 ALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAV------ATL--PFRFEGPRKMEKALKGLEK 149 (338)
T ss_dssp HHHTHHHHHHHHSSCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEE------EEE--CCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCeeEEecccCCCcCCCchHHHHHHHHhcCCCEEEE------eCC--CccccchhhHHHHHHHHHH
Confidence 455677778888888888888775443 4566777999999998654432 211 11 1111000001124456
Q ss_pred HhhhCCEEEEeC
Q 014091 299 IVESADAYVFVG 310 (431)
Q Consensus 299 ~~~~aD~vl~lG 310 (431)
+.+.+|++|++-
T Consensus 150 L~e~~D~~ivid 161 (338)
T 2r75_1 150 LKESSDAYIVIH 161 (338)
T ss_dssp HHHTCSEEEEEE
T ss_pred HHhcCCeEEEec
Confidence 678999999995
No 170
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=33.14 E-value=98 Score=23.85 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+++.+.|++.+--++++-..+ ..+....+..+++..++|++..
T Consensus 27 ~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 456677777665555555455 4567889999999999998765
No 171
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=33.10 E-value=56 Score=27.29 Aligned_cols=28 Identities=32% Similarity=0.733 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCC----EEEecCCCchHHHHH
Q 014091 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD 58 (431)
Q Consensus 31 ~~l~~~L~~~GV~----~vFgvpG~~~~~l~~ 58 (431)
+--.+.|+++|++ .+|-+||...+|+.-
T Consensus 31 ~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa 62 (157)
T 2obx_A 31 SAFEAEMADIGGDRFAVDVFDVPGAYEIPLHA 62 (157)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 3445888999986 599999999999874
No 172
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=33.08 E-value=24 Score=34.27 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc-hhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCc-ceeecCCCCCHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR-VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSSSFCGE 298 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~-~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~-~G~~~G~~~~~~~~~ 298 (431)
.++..+++.++|..+.--+|.+|.|.. .+++...|.++++.+++..+. +++. |+. =|..--+-......+
T Consensus 88 aee~~d~Ir~~le~~D~ffItagmGGGTGSGaapvIaeiake~g~Ltvs------VVt~--Pf~~Eg~~r~yNA~lgl~~ 159 (396)
T 4dxd_A 88 AEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVG------VVTR--PFSFEGRKRQTQAAAGVEA 159 (396)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEE------EEEE--CCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCccccHHHHHHHHHHhcCCceEE------EEeC--CccccchHHHHHHHHHHHH
Confidence 456678888888888876677764443 457778899999999865443 2211 211 111000001124456
Q ss_pred HhhhCCEEEEeCC
Q 014091 299 IVESADAYVFVGP 311 (431)
Q Consensus 299 ~~~~aD~vl~lG~ 311 (431)
+.+.+|++|+|-.
T Consensus 160 L~e~vD~vIvIdN 172 (396)
T 4dxd_A 160 MKAAVDTLIVIPN 172 (396)
T ss_dssp HHHHSSEEEEEEG
T ss_pred HHhhCCEEEEEcC
Confidence 7789999999963
No 173
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=33.03 E-value=1.6e+02 Score=27.81 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEec
Q 014091 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGC 71 (431)
Q Consensus 31 ~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~ 71 (431)
+..++.|.+.|++-||+.......++.+...+.|+++|+.+
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~i 116 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHA 116 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEE
Confidence 45677888889999988765555556555555566776654
No 174
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.81 E-value=64 Score=23.48 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
++..+.|++.+--++++-..+.. +-...+..+++..++|++...
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 46677787766445554445544 577889999999999998855
No 175
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=32.39 E-value=22 Score=32.02 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCEEEeCCccch
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
+++++++|+++++.||++|.|...
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~ 26 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGIST 26 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTG
T ss_pred HHHHHHHHHhCCCEEEEECceeeh
Confidence 457889999999999999999964
No 176
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.15 E-value=69 Score=24.82 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=52.3
Q ss_pred hhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcccccccccCCCC
Q 014091 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (431)
Q Consensus 248 ~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (431)
.+-+.+.|++-|+++|+.+-...+|- .|.- ... -.+-+++||+||+.+....+.. . +.+
T Consensus 18 TymAaeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~--R----F~G 76 (106)
T 2r48_A 18 TYMAAENLQKAADRLGVSIKVETQGG----------IGVE-NKL----TEEEIREADAIIIAADRSVNKD--R----FIG 76 (106)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEET----------TEEE-SCC----CHHHHHHCSEEEEEESSCCCCG--G----GTT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC----------CCcc-CCC----CHHHHHhCCEEEEEeCCccCHh--H----cCC
Confidence 34578999999999999988866542 2221 111 1245789999999997654422 1 246
Q ss_pred cceEEEccCceeecCCCccccccHHHHHHHHH
Q 014091 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALA 359 (431)
Q Consensus 328 ~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~ 359 (431)
.++++++.+.. +. |++.+|++..
T Consensus 77 K~v~~~~v~~a-i~--------~p~~~l~~a~ 99 (106)
T 2r48_A 77 KKLLSVGVQDG-IR--------KPEELIQKAL 99 (106)
T ss_dssp SBEEEECHHHH-HH--------CHHHHHHHHH
T ss_pred CeEEEeCHHHH-HH--------CHHHHHHHHH
Confidence 67888876543 11 5566666643
No 177
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=31.55 E-value=34 Score=36.93 Aligned_cols=97 Identities=14% Similarity=0.041 Sum_probs=57.0
Q ss_pred cEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC
Q 014091 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (431)
Q Consensus 91 gv~~~t~GpG~~----n~~~gl~~A~~~~~P---vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (431)
.++++..|=|+. +.-=++.-|...+.| +|+|+-..... .... .+.......+ ...++.+---..+|+
T Consensus 278 ~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st~--~~~~~s~~~~---~~~a~a~G~p~~~Vd 351 (868)
T 2yic_A 278 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTA--PTDSRSSEYC---TDVAKMIGAPIFHVN 351 (868)
T ss_dssp EEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBC--HHHHCSSSST---TGGGGGGTCCEEEEE
T ss_pred ceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-cccC--ccccccccCH---HHHHHhCCCcEEEEe
Confidence 477777888883 344446667778898 99998654211 1110 0000000111 123344333334444
Q ss_pred --CcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 164 --~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+++.+.+++++|+..+....||+.|++-..
T Consensus 352 G~D~~av~~a~~~A~~~ar~~~~PvlIe~~ty 383 (868)
T 2yic_A 352 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 383 (868)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 678888888888888888889999998654
No 178
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=31.52 E-value=31 Score=35.00 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=51.3
Q ss_pred eCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccc-----CCCceeeeecCCCChHHHHHHHhhheee---EEEcCCcc
Q 014091 96 TFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDY-----GTNRILHHTIGLPDFTQELRCFQAITCS---QAVVNNLG 166 (431)
Q Consensus 96 t~GpG~~n-~~~gl~~A~~~~~Pvl~I~g~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~k~---~~~v~~~~ 166 (431)
..|=|... .+..|..|...+.|++++.-+...... +..... ..+.. .|...+++.+--. ..++++++
T Consensus 441 ~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~-~~~~~---~d~~~~a~a~G~~~~~~~~v~~~~ 516 (563)
T 2vk8_A 441 FIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQY-NEIQG---WDHLSLLPTFGAKDYETHRVATTG 516 (563)
T ss_dssp EEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG-GCCCC---CCGGGHHHHTTCSSEEEEEECBHH
T ss_pred EEcchHhhccHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCc-ccCCC---CCHHHHHHHhCCCCCcEEEecCHH
Confidence 34666553 467788888999998888855432111 100000 01111 2445566665433 77787765
Q ss_pred hHHHHHHHHHH-HhhhCC-CcEEEEEccC
Q 014091 167 DAHELIDTAIS-TALKES-KPVYISISCN 193 (431)
Q Consensus 167 ~~~~~i~~A~~-~A~~~~-GPv~l~iP~d 193 (431)
++ ++|++ .+.... ||+.|++..+
T Consensus 517 el----~~al~~~a~~~~~~p~liev~~~ 541 (563)
T 2vk8_A 517 EW----DKLTQDKSFNDNSKIRMIEVMLP 541 (563)
T ss_dssp HH----HHHHTCTTTTSCSSEEEEEEECC
T ss_pred HH----HHHHHHHHHhCCCCcEEEEEEeC
Confidence 54 55555 455544 7999999876
No 179
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=31.37 E-value=50 Score=27.91 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=28.4
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCch
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFN 53 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~ 53 (431)
+++.++.+++...+.|+++||+|-.++-+.+=
T Consensus 14 gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR 45 (169)
T 3trh_A 14 GSDSDLSTMETAFTELKSLGIPFEAHILSAHR 45 (169)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEEcccC
Confidence 45688999999999999999999999998664
No 180
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=31.06 E-value=1.6e+02 Score=25.82 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=28.8
Q ss_pred cEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCC
Q 014091 91 GACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGP 125 (431)
Q Consensus 91 gv~~~t~GpG~~-n~~~gl~~A~~~~~Pvl~I~g~~ 125 (431)
-++++.|..|-+ +.+..+..|+..++++|.||+..
T Consensus 110 Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 110 DVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMK 145 (243)
T ss_dssp CEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 466666777766 78899999999999999999863
No 181
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=30.93 E-value=49 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCEEEeCCccchhchHH-HHHHHHHHhCCC
Q 014091 236 VKPVLVGGPNIRVAKAQK-AFIELADATGYP 265 (431)
Q Consensus 236 ~rpvI~~G~g~~~~~a~~-~l~~lae~~~~P 265 (431)
+|.++++|.|...+...+ .+++.++..|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 577899999998776544 899999998887
No 182
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=30.85 E-value=1.2e+02 Score=31.61 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=53.7
Q ss_pred EEEeCCcchHH---HHHHHHHhhhcCC-cEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEE-EcCCcc-
Q 014091 93 CVVTFTVGGLS---VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLG- 166 (431)
Q Consensus 93 ~~~t~GpG~~n---~~~gl~~A~~~~~-Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~- 166 (431)
+++..|=|.++ ..-++..|-..+. ++|+|.-+......+. ....+ ..|...+|+.+--... +++ ..
T Consensus 162 v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~~vd-G~~ 233 (675)
T 1itz_A 162 TYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGD---TEIAF----TEDVSTRFEALGWHTIWVKN-GNT 233 (675)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CSCHHHHHHHTTCEEEEESC-TTT
T ss_pred EEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCC---hhhhc----ChhHHHHHHhCCCEEEEEec-CCC
Confidence 33345888776 5677888888887 6777775443221111 11011 1356778888743333 454 22
Q ss_pred hHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 167 DAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
++ +.|.+|++.|.. ..+|+.|.+--..
T Consensus 234 d~-~~l~~al~~a~~~~~~P~lI~~~T~k 261 (675)
T 1itz_A 234 GY-DDIRAAIKEAKAVTDKPTLIKVTTTI 261 (675)
T ss_dssp CH-HHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred CH-HHHHHHHHHHHHCCCCeEEEEEeeec
Confidence 22 344566666665 5799999987654
No 183
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=30.77 E-value=1.3e+02 Score=30.88 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHhhhhhhhhc---C-ccEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCC
Q 014091 77 AGYAADGYARSR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGP 125 (431)
Q Consensus 77 A~~~A~gyar~t---g-~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~ 125 (431)
+.-+|.|.+.+. + -..+++..|=|.++ ..-++..|-..+.|||+|.-+.
T Consensus 126 gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN 181 (621)
T 2o1s_A 126 SISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDN 181 (621)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCC
Confidence 344455555432 2 22333344777775 3457888888889999998544
No 184
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=30.52 E-value=69 Score=24.60 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=54.6
Q ss_pred CCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHhhhCCEEEEeCCccCcc
Q 014091 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (431)
Q Consensus 237 rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~~~aD~vl~lG~~~~~~ 316 (431)
|.++++|.|..++=..+.+++.++..|+++-.... +.. .....+.++|+|| ++..+...
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~-----------------~~~---~~~~~~~~~D~Ii-~t~~l~~~ 64 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAI-----------------AET---RLSEVVDRFDVVL-LAPQSRFN 64 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEE-----------------CST---THHHHTTTCSEEE-ECSCCSSH
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEe-----------------cHH---HHHhhcCCCCEEE-ECCccHHH
Confidence 46888999998776678999999999887422111 111 2233467899765 44444321
Q ss_pred cccccccC--CCCcceEEEccCceeecCCCccccccHHHHHHHHHHHhc
Q 014091 317 SSVGYSLL--IKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (431)
Q Consensus 317 ~~~~~~~~--~~~~~~I~Id~d~~~~~~~~~~~~~d~~~~L~~L~~~l~ 363 (431)
. ..+... ..+.+++.|+.... ...|.+.+++.+.+.+.
T Consensus 65 ~-~~~~~~~~~~~~pv~~I~~~~y--------~~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 65 K-KRLEEITKPKGIPIEIINTIDY--------GTMNGEKVLQLAINAFN 104 (109)
T ss_dssp H-HHHHHHHHHHTCCEEECCHHHH--------HHTCHHHHHHHHHHHHH
T ss_pred H-HHHHHHhcccCCCEEEEChHHh--------ccCCHHHHHHHHHHHHh
Confidence 0 011000 01345666655432 12366777777766654
No 185
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=30.38 E-value=62 Score=25.12 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.6
Q ss_pred CCCEEEeCCccchhc-hHHHHHHHHHHhCCCe
Q 014091 236 VKPVLVGGPNIRVAK-AQKAFIELADATGYPI 266 (431)
Q Consensus 236 ~rpvI~~G~g~~~~~-a~~~l~~lae~~~~Pv 266 (431)
+|.++++|.|...+. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 567999999998876 5899999999999885
No 186
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=30.11 E-value=1.1e+02 Score=24.99 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCCccc------h-hchHHHHHHHHHHhCCCeEecCC
Q 014091 220 GLEAAVEATADFLNKAVKPVLVGGPNIR------V-AKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 220 ~~~~~~~~~~~~L~~a~rpvI~~G~g~~------~-~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
...+.++++++.+++....+|+++.-.. . ....+.++++|++.+++++..+.
T Consensus 87 ~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 87 KMQTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 3456788889999888777888873111 1 12457889999999999998653
No 187
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=30.04 E-value=32 Score=31.88 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccch
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
..+++++++|+++++.|++.|.|...
T Consensus 33 ~~i~~l~~~i~~a~~ivvlTGAGiSt 58 (290)
T 3u31_A 33 ITLEELAKIIKKCKHVVALTGSGTSA 58 (290)
T ss_dssp ECHHHHHHHHHTCSSEEEEECGGGTG
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 45788999999999999999999964
No 188
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=30.02 E-value=29 Score=31.91 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccch
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
.++++.++|+++++.|++.|.|+..
T Consensus 10 ~i~~l~~~l~~a~~ivvlTGAGiSt 34 (273)
T 3riy_A 10 SMADFRKFFAKAKHIVIISGAGVSA 34 (273)
T ss_dssp CHHHHHHHHHHCSEEEEEECGGGTG
T ss_pred HHHHHHHHHHhCCcEEEEECcccch
Confidence 4678899999999999999999964
No 189
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=29.88 E-value=1.5e+02 Score=23.32 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+++.+.|++.+--++++-..+....-...+..+++..++|++...
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 456677777665555555556443357889999999999997754
No 190
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=29.82 E-value=1.1e+02 Score=26.07 Aligned_cols=35 Identities=14% Similarity=-0.067 Sum_probs=29.6
Q ss_pred CCCCCcccHHHHHHHHHHHcCCCEEEecCCCchHH
Q 014091 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLT 55 (431)
Q Consensus 21 ~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~ 55 (431)
-|+.+++.+.+...+.|+++||+|-.++-+.+=.|
T Consensus 29 mGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp 63 (181)
T 4b4k_A 29 MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTP 63 (181)
T ss_dssp ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSH
T ss_pred ECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccCh
Confidence 35568899999999999999999999998876543
No 191
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=29.77 E-value=58 Score=31.30 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=38.6
Q ss_pred cCCCEEEeCCccchh--chHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--hhCCEEEEeC
Q 014091 235 AVKPVLVGGPNIRVA--KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVG 310 (431)
Q Consensus 235 a~rpvI~~G~g~~~~--~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~--~~aD~vl~lG 310 (431)
.+|++|+.|.+.... +..+.+.+..+..++.+..-..+ +.+|-.--+ ..+.+.+ .++|+||.||
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v-------~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGV-----EPNPKDTNV-------RDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCC-----CSSCBHHHH-------HHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHH-------HHHHHHHHhcCCCEEEEeC
Confidence 478999999888765 57788888888888876421111 223322211 1222223 3689999998
Q ss_pred C
Q 014091 311 P 311 (431)
Q Consensus 311 ~ 311 (431)
.
T Consensus 101 G 101 (387)
T 3bfj_A 101 G 101 (387)
T ss_dssp S
T ss_pred C
Confidence 4
No 192
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=29.65 E-value=70 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
++++++.+++..++.|+++||+|-.++-+.+=.
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~ 53 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRT 53 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCC
Confidence 456889999999999999999999999986543
No 193
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=29.37 E-value=4e+02 Score=28.47 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred eEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHH----HHHH----HHHh-----hhcCC-cEEEEeCCCCCcccCC
Q 014091 67 NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS----VLNA----IAGA-----YSENL-PVICIVGGPNSNDYGT 132 (431)
Q Consensus 67 ~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n----~~~g----l~~A-----~~~~~-Pvl~I~g~~~~~~~~~ 132 (431)
|+|....|++.+.+|.||+...+.+.+ .+. --.+. +.+. |-.+ |+-.+ ++.+|.....-. .+.
T Consensus 492 R~i~GI~Eh~M~gia~Glal~G~~~f~-~t~-atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~-~Ge 568 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLLTGRHGIW-SSY-ESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWR-QDH 568 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHHTTCEEEE-EEE-HHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGG-CTT
T ss_pred cEeeeecHHHHHHHHHHHHhcCCCCce-ecc-hhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCcee-ecC
Confidence 788899999999999999987544332 222 22232 2233 3322 11245 466554433322 333
Q ss_pred CceeeeecCCCChHHHHHHHh--hheeeEEEcCCcchHHHHHHHHHHHhhhCCCcEEEEE
Q 014091 133 NRILHHTIGLPDFTQELRCFQ--AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (431)
Q Consensus 133 ~~~~~~~~~~~~~~d~~~~~~--~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPv~l~i 190 (431)
+..-| |..++.|++.+.+ .+-. .+|-.|.+..+ +..|++.|...++|+++-+
T Consensus 569 DGpTH---Q~~e~~d~l~~~r~~~iPn--~~V~~PaDane-t~~a~~~al~~~~~~~v~v 622 (845)
T 3ahc_A 569 NGFSH---QDPGVTSLLINKTFNNDHV--TNIYFATDANM-LLAISEKCFKSTNKINAIF 622 (845)
T ss_dssp TCGGG---CCCTHHHHHGGGCCTTCCC--EEEEECCSHHH-HHHHHHHHHHCBSCEEEEE
T ss_pred CCCCC---CCcHHHHHHHHhhccCCCC--eEEEeCCCHHH-HHHHHHHHHHcCCCeEEEE
Confidence 33333 3233445444331 2211 12223444444 4677888888888777776
No 194
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=29.22 E-value=34 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccch
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
.+++++++|+++++.||++|.|+..
T Consensus 35 ~i~~l~~~l~~a~~IvvlTGAGISt 59 (354)
T 2hjh_A 35 TIDHFIQKLHTARKILVLTGAGVST 59 (354)
T ss_dssp SHHHHHHHHHHCSSEEEEECGGGGG
T ss_pred HHHHHHHHHHhCCcEEEEECchhhH
Confidence 5788999999999999999999964
No 195
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=29.08 E-value=92 Score=35.04 Aligned_cols=98 Identities=9% Similarity=-0.095 Sum_probs=56.9
Q ss_pred EEEeCCcc--hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCC--c-----eeeee---cCCC-ChHHHHHHHhhhe-ee
Q 014091 93 CVVTFTVG--GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN--R-----ILHHT---IGLP-DFTQELRCFQAIT-CS 158 (431)
Q Consensus 93 ~~~t~GpG--~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~--~-----~~~~~---~~~~-~~~d~~~~~~~~~-k~ 158 (431)
+++..|=| ..-.+..|..|...+.|+++|.-+......-++ . ..... .|.. ...|...+.+.+- +|
T Consensus 956 Vv~i~GDG~~~~mg~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~~~ 1035 (1231)
T 2c42_A 956 VWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGYVY 1035 (1231)
T ss_dssp EEEEEEHHHHHTTTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSSSE
T ss_pred EEEEeCcHHHHHcchHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCCCE
Confidence 33344666 334578999999999999999876443221110 0 00000 0100 0136777888774 45
Q ss_pred EEEc---CCcchHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 159 QAVV---NNLGDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 159 ~~~v---~~~~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
..++ .+++++.+. ++.|...+||++|++..+-
T Consensus 1036 va~~~v~~~~~~l~~a----l~eAl~~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1036 VATVSMGYSKQQFLKV----LKEAESFPGPSLVIAYATC 1070 (1231)
T ss_dssp EEEECTTTCHHHHHHH----HHHHHHSSSCEEEEEECCC
T ss_pred EEEEeccCCHHHHHHH----HHHHHhcCCCEEEEEeecC
Confidence 5443 466666554 5555556899999998775
No 196
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=28.91 E-value=45 Score=32.06 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=38.9
Q ss_pred cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh--hhCCEEEEeCC
Q 014091 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV--ESADAYVFVGP 311 (431)
Q Consensus 235 a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~--~~aD~vl~lG~ 311 (431)
.+|++|+.|..+...+..+.+.+..+..++.+..-. + + +.+|-.--+ ..+.+.+ .++|+||.||.
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~-~---~-~~~p~~~~v-------~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYD-G---V-VPNPTITVV-------KEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEEC-B---C-CSSCBHHHH-------HHHHHHHHHHTCSEEEEEES
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEEC-C---c-cCCCCHHHH-------HHHHHHHHhcCcCEEEEeCC
Confidence 578888888877655567888887787787764211 1 1 223322111 1222222 36899999984
No 197
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=28.81 E-value=1.1e+02 Score=25.93 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccc---h--------hchHHHHHHHHHHhCCCeEecCC
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIR---V--------AKAQKAFIELADATGYPIAIMPS 271 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~---~--------~~a~~~l~~lae~~~~Pv~tt~~ 271 (431)
..+.++++++.|++. .++|+++..-. . ....+.++++|++.+++++....
T Consensus 115 ~~~~l~~li~~l~~~-~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~ 175 (218)
T 1vjg_A 115 TIKNTREILTQAKKL-YPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFP 175 (218)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTG
T ss_pred HHHHHHHHHHHHHHh-CcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHH
Confidence 456677788888776 77888875333 1 12357788999999999998763
No 198
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=28.36 E-value=3.3e+02 Score=26.67 Aligned_cols=163 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCC
Q 014091 55 TLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN 133 (431)
Q Consensus 55 ~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~ 133 (431)
..++++.++.++..+....|..+...+..| +.-. .-+.++|.|-|..-+..=....+--.+|-+
T Consensus 259 ~~~~AafRqaGv~~v~~~~El~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l-------------- 323 (457)
T 2csu_A 259 KIYEAAFKQSGVLVANTIDEMLSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATL-------------- 323 (457)
T ss_dssp HHHHHHHHHTTCEEESSHHHHHHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCC--------------
T ss_pred HHHHHHHHhCCCeEECCHHHHHHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCC--------------
Q ss_pred ceeeeecCCCChHHHHHHHhhheeeEEEcCCcchH-----HHHHHHHHHHhhhCC--CcEEEEE-ccCC--CCCCCCCCC
Q 014091 134 RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA-----HELIDTAISTALKES--KPVYISI-SCNL--PGIPHPTFA 203 (431)
Q Consensus 134 ~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~-----~~~i~~A~~~A~~~~--GPv~l~i-P~dv--~~~~~~~~~ 203 (431)
..+...-++.+........+|=++ ++.+.++++.....+ .-+.+.+ |... ..
T Consensus 324 -----------~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~------- 385 (457)
T 2csu_A 324 -----------EEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMT------- 385 (457)
T ss_dssp -----------CHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCC-------
T ss_pred -----------CHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCC-------
Q ss_pred CCCCCccCCCCCCChhhHHHHHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 204 RDPVPFFLAPKVSNQLGLEAAVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
.....+.+++.+.+ .++|++++-.+.. ..++.++..+..|+|++.++
T Consensus 386 -----------------~~~~a~~i~~al~~~~~~kPvvv~~~~g~---~~~~~~~~L~~~Gip~~~sp 434 (457)
T 2csu_A 386 -----------------LTEHAEGIIRAVKEVNNEKPVLAMFMAGY---VSEKAKELLEKNGIPTYERP 434 (457)
T ss_dssp -----------------SSHHHHHHHHHHHHHCCCCCEEEEEECTT---TTHHHHHHHHTTTCCEESSH
T ss_pred -----------------chhHHHHHHHHHHHhcCCCCEEEEeCCCc---chHHHHHHHHhCCCCccCCH
No 199
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.30 E-value=1.4e+02 Score=22.34 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCC-EEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 226 EATADFLNKAVKP-VLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 226 ~~~~~~L~~a~rp-vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+++.+.|++.+-- ||++.. + ..+....+..+++..++|++..
T Consensus 21 ~~v~kai~~gka~lViiA~D-~-~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKN-A-PKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECC-C-CHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEeCC-C-CHHHHHHHHHHHHHcCCCEEEe
Confidence 3556677665544 555655 4 3457888999999999998664
No 200
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=28.07 E-value=1.8e+02 Score=24.51 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHHc-CCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHH
Q 014091 30 GRHLARRLVEI-GAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVL 105 (431)
Q Consensus 30 a~~l~~~L~~~-GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~ 105 (431)
-+.+++.|.+. +-=++||+-++.... +...|.+ -++..+... .. -++..-....+.--++++.|..|.+ +.+
T Consensus 34 i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~-~~--~~~~~~~~~~~~~dvvI~iS~sG~t~~~~ 109 (201)
T 3fxa_A 34 LVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNC-IERPAVFLT-PS--DAVHGTLGVLQKEDILILISKGGNTGELL 109 (201)
T ss_dssp HHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHH-TTCCEEECC-HH--HHTTTGGGGCCTTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHh-cCCcEEEeC-ch--HHHhhhhhcCCCCCEEEEEeCCCCCHHHH
Confidence 45677888887 466777775554332 2222333 245444332 21 1222222333333456666667766 688
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC
Q 014091 106 NAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
..+..|+..++++|.||+....
T Consensus 110 ~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 110 NLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp TTHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHcCCeEEEEECCCCC
Confidence 8888999999999999987543
No 201
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=27.90 E-value=65 Score=27.71 Aligned_cols=45 Identities=22% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhc---CCCEEEeCCccchhchHHHHHHHHH-----HhCCCeEe
Q 014091 224 AVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELAD-----ATGYPIAI 268 (431)
Q Consensus 224 ~~~~~~~~L~~a---~rpvI~~G~g~~~~~a~~~l~~lae-----~~~~Pv~t 268 (431)
.+++++++|.++ .+-+++.|.|....-+...-.+|.. +.|+|++.
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~ 83 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIA 83 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEE
Confidence 677777776554 3447777888765556666666664 57777655
No 202
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=27.85 E-value=93 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCEEE-eCC--ccch-hchHHHHHHHHHHhCCCeEecCCC
Q 014091 227 ATADFLNKAVKPVLV-GGP--NIRV-AKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~-~G~--g~~~-~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
++.++|++.+--+|+ .=. +... ......|++.|...++|++||..+
T Consensus 73 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~lat 122 (152)
T 1b93_A 73 QVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVAT 122 (152)
T ss_dssp HHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHH
T ss_pred hHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHH
Confidence 688999987755544 222 2222 357899999999999999999864
No 203
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=27.65 E-value=1.1e+02 Score=31.53 Aligned_cols=94 Identities=23% Similarity=0.171 Sum_probs=52.9
Q ss_pred ccEEEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCc
Q 014091 90 VGACVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL 165 (431)
Q Consensus 90 ~gv~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~ 165 (431)
..+|+ .|=|.++ ..-++..|-..+.| +|+|.-+......+. .+..+ ..|....|+.+--...+++ .
T Consensus 145 ~v~~v--~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~---~~~~~----~~d~~~~~~a~G~~~~~vd-G 214 (632)
T 3l84_A 145 KIYCL--CGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGD---VGLAF----NENVKMRFEAQGFEVLSIN-G 214 (632)
T ss_dssp CEEEE--EEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CCCHHHHHHHTTCEEEEEE-T
T ss_pred eEEEE--ECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccc---hhhhc----ChhHHHHHHHcCCeEEEEe-e
Confidence 34444 4777775 34577888888988 666654432221110 11111 1356778888743333453 1
Q ss_pred chHHHHHHHHHHHhhhCCCcEEEEEccCC
Q 014091 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (431)
Q Consensus 166 ~~~~~~i~~A~~~A~~~~GPv~l~iP~dv 194 (431)
.+ .+.|.+|++.|....+|+.|.+--..
T Consensus 215 hd-~~~l~~al~~A~~~~~P~lI~v~T~k 242 (632)
T 3l84_A 215 HD-YEEINKALEQAKKSTKPCLIIAKTTI 242 (632)
T ss_dssp TC-HHHHHHHHHHHHTCSSCEEEEEECCT
T ss_pred CC-HHHHHHHHHHHHhCCCCEEEEEeeEe
Confidence 12 23445667767666799999987543
No 204
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=27.53 E-value=47 Score=36.97 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=58.0
Q ss_pred cEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcC
Q 014091 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (431)
Q Consensus 91 gv~~~t~GpG~~----n~~~gl~~A~~~~~P---vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (431)
.++++..|=|+. ..-=++.-|...+.| +|+|+-....... .. ....... . +....++.+---..+|+
T Consensus 523 ~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gis-t~--~~~~~s~-~--~~~~~a~a~G~p~~~Vd 596 (1113)
T 2xt6_A 523 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFT-TA--PTDSRSS-E--YCTDVAKMIGAPIFHVN 596 (1113)
T ss_dssp EEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTT-BC--HHHHCSS-S--STTGGGGGGTCCEEEEE
T ss_pred cEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccc-cC--ccccccc-c--CHHHHHHhcCCcEEEEc
Confidence 577777888883 344456667778898 9999865422111 10 0000000 1 11123444433344555
Q ss_pred --CcchHHHHHHHHHHHhhhCCCcEEEEEccC
Q 014091 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (431)
Q Consensus 164 --~~~~~~~~i~~A~~~A~~~~GPv~l~iP~d 193 (431)
+++.+.+++++|+..+....||+.|++-.-
T Consensus 597 G~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 597 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 788888888888888888889999998643
No 205
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=27.52 E-value=75 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.9
Q ss_pred cC-ccEEEEeCCcchH--HHHHHHHHhhhcCCcEEEEe
Q 014091 88 RG-VGACVVTFTVGGL--SVLNAIAGAYSENLPVICIV 122 (431)
Q Consensus 88 tg-~gv~~~t~GpG~~--n~~~gl~~A~~~~~Pvl~I~ 122 (431)
.| .|+++.+.|.|.. .++.+|.+|...++||+..|
T Consensus 244 ~g~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~S 281 (334)
T 3nxk_A 244 HGTKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVVSS 281 (334)
T ss_dssp TTCCEEEEEEBTTTBCCHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEeeECCCCCcHHHHHHHHHHHHCCCEEEEeC
Confidence 35 5789999998865 57888889999999999887
No 206
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=27.50 E-value=62 Score=31.05 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeE
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
+++.+.+.+.+|.+|+.+.++.. ..+.+.+..+..|+.+.
T Consensus 34 ~~l~~~l~~~~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~ 73 (368)
T 3qbe_A 34 DELEDLLADRHKVAVVHQPGLAE--TAEEIRKRLAGKGVDAH 73 (368)
T ss_dssp HHHHHHHTTCSEEEEEECGGGHH--HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCEEEEEECccHHH--HHHHHHHHHHhcCCcce
Confidence 34555555558999999988765 35667777777777753
No 207
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=27.18 E-value=1.1e+02 Score=28.00 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcce
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIG 285 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G 285 (431)
..++.+.+++.+ .+.++++|... +.....+..++++.++|+++.......+....+++..
T Consensus 62 ~a~~~a~~li~~-~~v~~i~g~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f~ 121 (353)
T 4gnr_A 62 EAASVTTNLVTQ-SKVSAVVGPAT--SGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFI 121 (353)
T ss_dssp HHHHHHHHHHHT-SCCSEEECCCS--HHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEEE
T ss_pred HHHHHHHHHHhh-CCceEEecccc--CcccceehhhhhccCcceEeecccccccccCCccccc
Confidence 345555566555 55566666544 3366778899999999999877655555555555443
No 208
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=27.16 E-value=38 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCEEEeCCccch
Q 014091 226 EATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
++++++|+++++.||++|.|...
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~ 25 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSA 25 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGG
T ss_pred HHHHHHHHhCCCEEEEECchhhh
Confidence 46789999999999999999964
No 209
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=27.04 E-value=1.1e+02 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 21 ~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
-|+++++.+.+..++.|+++||+|-.+|-+.+=.
T Consensus 19 mGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~ 52 (173)
T 4grd_A 19 MGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRM 52 (173)
T ss_dssp ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred eCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccC
Confidence 3557889999999999999999999999997654
No 210
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.00 E-value=66 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHH-----HHhCCCeEe
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA-----DATGYPIAI 268 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~la-----e~~~~Pv~t 268 (431)
+.++.+++.|.+++| +++.|.|....-+...-.+|. .+.|.|+..
T Consensus 33 ~~~~~i~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~ 82 (199)
T 1x92_A 33 QASLVMVNALLNEGK-ILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVA 82 (199)
T ss_dssp HHHHHHHHHHHTTCC-EEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred HHHHHHHHHHHCCCE-EEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEe
Confidence 445555588888866 667788875433333333332 345566554
No 211
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=26.74 E-value=1.4e+02 Score=22.49 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHhcC-CCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 226 EATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 226 ~~~~~~L~~a~-rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+++.+.|++.+ +-||++.. + ..+....+..+++..++|++..
T Consensus 22 ~~v~kai~~gka~lViiA~D-~-~~~~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARN-A-RPDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETT-S-CHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCcEEEEeCC-C-CHHHHHHHHHHHHhcCCCEEEe
Confidence 45667777655 44666665 3 3457888999999999998763
No 212
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=26.64 E-value=2.6e+02 Score=22.85 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcC-CCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHH
Q 014091 30 GRHLARRLVEIG-AKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVL 105 (431)
Q Consensus 30 a~~l~~~L~~~G-V~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~ 105 (431)
-+.+++.|.+.+ -=++||+-++.... +...|.+ -++..+..... .. +..-....+.--++++.|..|-+ +.+
T Consensus 38 i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~-~~--~~~~~~~~~~~d~vI~iS~sG~t~~~~ 113 (183)
T 2xhz_A 38 FTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAS-TGTPSFFVHPG-EA--AHGDLGMVTPQDVVIAISNSGESSEIT 113 (183)
T ss_dssp HHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHT-TTCCEEECCTT-HH--HHHTSTTCCTTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHh-cCceEEEeCch-HH--hhhhhccCCCCCEEEEEeCCCCCHHHH
Confidence 456777787764 55677775554332 2233333 34544333211 11 11111222223455556666655 788
Q ss_pred HHHHHhhhcCCcEEEEeCCCC
Q 014091 106 NAIAGAYSENLPVICIVGGPN 126 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~ 126 (431)
..+..|+..+.++|.||+...
T Consensus 114 ~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 114 ALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp HHHHHHHTTTCCEEEEESCTT
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 888899999999999998654
No 213
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=26.60 E-value=1.2e+02 Score=23.33 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEe-CCccchhchHHHHHHHHHHhCCCeEe
Q 014091 222 EAAVEATADFLNKAVKPVLVG-GPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~-G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
.+..+.+++.+++.++.+++. .+.-.-++...++.+.++..+++|-.
T Consensus 66 ~~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~v 113 (117)
T 3hh1_A 66 ERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEE
Confidence 345677888888888888888 34333355556666666778888754
No 214
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=26.08 E-value=65 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCC---EEEecCCCchHHHHH-hhhc
Q 014091 31 RHLARRLVEIGAK---DVFSVPGDFNLTLLD-HLIA 62 (431)
Q Consensus 31 ~~l~~~L~~~GV~---~vFgvpG~~~~~l~~-al~~ 62 (431)
+--.+.|+++|++ .+|-+||...+|+.- .|.+
T Consensus 33 ~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~ 68 (156)
T 1c2y_A 33 EGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGK 68 (156)
T ss_dssp HHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHh
Confidence 3445888999985 899999999999874 4443
No 215
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=26.02 E-value=1.3e+02 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchHH-HHHhh
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLT-LLDHL 60 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~-l~~al 60 (431)
+++.++.+++...+.|+++||+|=.++-+.+=.+ -+..+
T Consensus 7 gs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~ 46 (157)
T 2ywx_A 7 GSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEI 46 (157)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHH
Confidence 4467899999999999999999999999865443 33444
No 216
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=25.97 E-value=1.4e+02 Score=23.66 Aligned_cols=45 Identities=7% Similarity=0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+++.+.|++.+--++++-..+....-...+..|++..++|++...
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 356677776664444444445333467889999999999998644
No 217
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.67 E-value=1.6e+02 Score=24.88 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC-ccEEEEeCCcchH-HHH
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGL-SVL 105 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg-~gv~~~t~GpG~~-n~~ 105 (431)
-+.+++.|.+.+-=++||+-++.... +...|.+ -++..+.. ++. +...-+ --++++.|..|-+ ..+
T Consensus 37 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~-~~~--------~~~~~~~~DvvI~iS~SG~t~~~i 106 (200)
T 1vim_A 37 VGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMH-LGYTVYVV-GET--------VTPRITDQDVLVGISGSGETTSVV 106 (200)
T ss_dssp HHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHH-TTCCEEET-TST--------TCCCCCTTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHh-cCCeEEEe-CCc--------cccCCCCCCEEEEEeCCCCcHHHH
Confidence 46778888887755677765444322 2223322 24444332 221 122223 3566667777766 688
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC
Q 014091 106 NAIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 106 ~gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
..+..|+..++|+|.||+....
T Consensus 107 ~~~~~ak~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 107 NISKKAKDIGSKLVAVTGKRDS 128 (200)
T ss_dssp HHHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHCCCeEEEEECCCCC
Confidence 8888999999999999987543
No 218
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=25.58 E-value=79 Score=28.98 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchH--HHHHhhhcCCCceEEecCc----------hhHHHHhhhhhhhhcC-ccEEEEe
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCCN----------ELNAGYAADGYARSRG-VGACVVT 96 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~--~l~~al~~~~~i~~v~~~h----------E~~A~~~A~gyar~tg-~gv~~~t 96 (431)
..+.++-+.+.|.+.|.-+-+...+ =+.+.|. +..++|.-.. |.--+.+=-||.-..| .|+.-=|
T Consensus 39 vnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~--~ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvLaHT 116 (274)
T 1hi9_A 39 ANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLH--PEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHS 116 (274)
T ss_dssp HHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSC--TTSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTTCCS
T ss_pred HHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCC--cCeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCccCCC
Confidence 3456788999999999998765543 2333443 4577776544 2111112224544444 3433222
Q ss_pred CCcc----------hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcc
Q 014091 97 FTVG----------GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG 166 (431)
Q Consensus 97 ~GpG----------~~n~~~gl~~A~~~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~ 166 (431)
++-. .....-.-+-|-.-++||++++|+...-...+. .+ ++ ...+..-+.+..++....+|+
T Consensus 117 ~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~e~~~-----~~--P~-~~tv~vK~~~gr~aa~~~~p~ 188 (274)
T 1hi9_A 117 MIFGVRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEE-----LI--PN-VTTAAVKQTISRSAVKCLSPA 188 (274)
T ss_dssp SSTTEEEEEETTEEECHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHT-----TS--TT-CEEEEEEEEEETTEEEECCHH
T ss_pred CccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-CeEEEEeecccccccccCCHH
Confidence 2211 111112222345579999999998432111000 00 00 001111223344777788899
Q ss_pred hHHHHHHHHHHHhhhC
Q 014091 167 DAHELIDTAISTALKE 182 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~~ 182 (431)
.+.+.|++|.+.|...
T Consensus 189 ~a~~~I~~aa~~Al~~ 204 (274)
T 1hi9_A 189 KRGRLLTEKTAFALQN 204 (274)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998853
No 219
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=25.44 E-value=79 Score=26.64 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCc
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~Gp 99 (431)
+++.++.+++...+.|+++||.|-.++-+.+=.| +++-+.+. +..|.-|+++ +-
T Consensus 13 gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~----------------------~~~g~~ViIa--~A 68 (166)
T 3oow_A 13 GSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETA----------------------KERGLKVIIA--GA 68 (166)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHT----------------------TTTTCCEEEE--EE
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHH----------------------HhCCCcEEEE--EC
Confidence 4467899999999999999999999999866432 22222110 1112223333 44
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeC
Q 014091 100 GGLSVLNAIAGAYSENLPVICIVG 123 (431)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pvl~I~g 123 (431)
|..+.++|+..+.. ..|||-+--
T Consensus 69 G~aa~LpgvvA~~t-~~PVIgVP~ 91 (166)
T 3oow_A 69 GGAAHLPGMVAAKT-TLPVLGVPV 91 (166)
T ss_dssp CSSCCHHHHHHHTC-SSCEEEEEC
T ss_pred CcchhhHHHHHhcc-CCCEEEeec
Confidence 55667777776655 578877653
No 220
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=25.36 E-value=26 Score=34.06 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+++..+.--+|++|.|. ..+++...|.++++.++++++.-.. .|-. +=|..--+-......++
T Consensus 82 aee~~d~I~~~le~~d~~fI~asmGGGTGSG~ap~lae~~ke~g~ltvsVv~----~Pf~---~Eg~~r~ynA~~~l~~L 154 (394)
T 2vaw_A 82 ALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVT----RPFP---FEGRKRMQIADEGIRAL 154 (394)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEE----ECCG---GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEec----CCcc---cccchhhHHHHHHHHHH
Confidence 35567777888888876556666443 2457778888888888877654111 1110 11110000011244567
Q ss_pred hhhCCEEEEeC
Q 014091 300 VESADAYVFVG 310 (431)
Q Consensus 300 ~~~aD~vl~lG 310 (431)
.+.+|++|+|-
T Consensus 155 ~e~~D~~ivid 165 (394)
T 2vaw_A 155 AESVDSLITIP 165 (394)
T ss_dssp HTTCSEEEEEE
T ss_pred HHhCCEEEEEe
Confidence 78999999996
No 221
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=25.30 E-value=33 Score=32.82 Aligned_cols=83 Identities=10% Similarity=0.004 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCcc-chhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHH
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~-~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~ 299 (431)
.++..+++.+++..+.--+|.+|.|. ..+++...|.+.++..++.++.-.. .|-...--.-.|. ......++
T Consensus 92 aee~~d~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~ke~g~lt~~Vvt----~Pf~~Eg~~~~~n---A~~~l~~L 164 (353)
T 1w5f_A 92 ALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVT----TPFYFEGPERLKK---AIEGLKKL 164 (353)
T ss_dssp HHHTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE----ECCGGGCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCccccHHHHHHHHHHHhCCcEEEEEe----CCcccccchhHHH---HHHHHHHH
Confidence 34567777777777776566666333 3467888889999988866543111 0100000000111 11244567
Q ss_pred hhhCCEEEEeC
Q 014091 300 VESADAYVFVG 310 (431)
Q Consensus 300 ~~~aD~vl~lG 310 (431)
.+++|++|+|-
T Consensus 165 ~e~~D~~ivid 175 (353)
T 1w5f_A 165 RKHVDTLIKIS 175 (353)
T ss_dssp HHTCSEEEEEE
T ss_pred HhhCCEEEEEe
Confidence 78999999996
No 222
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=25.00 E-value=36 Score=32.81 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCcceeecCCCCCHHHHHHh-
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV- 300 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~~~G~~~~~~~~~~~- 300 (431)
.++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+..-. ++ +.+|-.--+ ..+.+.+
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~---~v--~~~p~~~~v-------~~~~~~~~ 85 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYD---GV--MPNPTVTAV-------LEGLKILK 85 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEE---EE--CSSCBHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEEC---Cc--cCCCCHHHH-------HHHHHHHH
Confidence 34555566654 478999999877655567888887787787764311 11 123322221 1222222
Q ss_pred -hhCCEEEEeCC
Q 014091 301 -ESADAYVFVGP 311 (431)
Q Consensus 301 -~~aD~vl~lG~ 311 (431)
.++|+||.||.
T Consensus 86 ~~~~D~IIavGG 97 (383)
T 3ox4_A 86 DNNSDFVISLGG 97 (383)
T ss_dssp HHTCSEEEEEES
T ss_pred hcCcCEEEEeCC
Confidence 36999999993
No 223
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=24.90 E-value=1.1e+02 Score=28.18 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 229 ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 229 ~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+|+..=++.||.++-.|+.+.=....-.+..|..|+||++.-
T Consensus 141 aDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy~ 182 (297)
T 1vkm_A 141 QDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFR 182 (297)
T ss_dssp HHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEES
T ss_pred hhHHHhcCCCeEEEecccchhhcchhHHHHHHhCCceEEEec
Confidence 355555789999999999887677888899999999999973
No 224
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.85 E-value=3.6e+02 Score=23.76 Aligned_cols=150 Identities=9% Similarity=-0.027 Sum_probs=75.8
Q ss_pred CCcccHHHHHHHHHHHcC--CCEEEecCCCc--------hHHHHHhhhcCCCceEEecC--chhHHHH-hhhhhhhhcC-
Q 014091 24 ASVGTLGRHLARRLVEIG--AKDVFSVPGDF--------NLTLLDHLIAEPELNLVGCC--NELNAGY-AADGYARSRG- 89 (431)
Q Consensus 24 ~~~~~~a~~l~~~L~~~G--V~~vFgvpG~~--------~~~l~~al~~~~~i~~v~~~--hE~~A~~-~A~gyar~tg- 89 (431)
.+....+..+++.|.+.| -+.+.-+-|.. ...+.++|.+. +++++... .....++ ++..+-+...
T Consensus 110 ~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (297)
T 3rot_A 110 SDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPE 188 (297)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTT
T ss_pred cChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCC
Confidence 455678899999999999 77776665442 23467777765 67665432 1212222 2222222233
Q ss_pred ccEEEEeCCcchHHHHHHHHHhhh----cCCcEEEEeCCCCCcccCCCceeeeecCCCChHHHHHH-HhhheeeEEEcCC
Q 014091 90 VGACVVTFTVGGLSVLNAIAGAYS----ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC-FQAITCSQAVVNN 164 (431)
Q Consensus 90 ~gv~~~t~GpG~~n~~~gl~~A~~----~~~Pvl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~k~~~~v~~ 164 (431)
+-++++.....+..++.++.++-. ..+.++-+-+ ....... ...... +..-.+
T Consensus 189 ~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~---------------------~~~~~~~i~~~~~l-ttv~~~ 246 (297)
T 3rot_A 189 TNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDK---------------------TPNTVSLIHKKLVN-YVMDQQ 246 (297)
T ss_dssp CCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECC---------------------CHHHHHHHHTTSCC-EEECCC
T ss_pred CCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCC---------------------CHHHHHHHHcCCce-EEEecC
Confidence 667777766666666666665544 2333332211 1111222 222222 222334
Q ss_pred cchHHHH-HHHHHHHhhhCCCcEEEEEccCCCC
Q 014091 165 LGDAHEL-IDTAISTALKESKPVYISISCNLPG 196 (431)
Q Consensus 165 ~~~~~~~-i~~A~~~A~~~~GPv~l~iP~dv~~ 196 (431)
++++.+. ++..++......-|-.+.+|.++..
T Consensus 247 ~~~~g~~av~~l~~~i~g~~~~~~i~~~~~~~~ 279 (297)
T 3rot_A 247 PFLMGYLSITQLVLMNRYQLNPVNINTAMAENL 279 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCEECCC----
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccCceEEe
Confidence 5554443 3333333333457888999998865
No 225
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=24.83 E-value=1.5e+02 Score=24.41 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccch-------hchHHHHHHHHHHhCCCeEec
Q 014091 221 LEAAVEATADFLNKAVKPVLVGGPNIRV-------AKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G~g~~~-------~~a~~~l~~lae~~~~Pv~tt 269 (431)
..+.++++++.|++....+|+++.-... ....+.++++|++.+++++..
T Consensus 84 ~~~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~ 139 (190)
T 1ivn_A 84 TEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPF 139 (190)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEcc
Confidence 4567888888888776678888742111 224567889999999998864
No 226
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=24.48 E-value=1.2e+02 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHh-----CCCeEecCCCcc
Q 014091 222 EAAVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADAT-----GYPIAIMPSGKG 274 (431)
Q Consensus 222 ~~~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~-----~~Pv~tt~~gkg 274 (431)
+.++-+++++|.+. -||.+++|.-+..-++.+.=.+|.+.. ++|.++.-.-||
T Consensus 143 PTAL~~Lleli~~g~~~PalVIG~PVGFVgAaESKe~L~~~~~~~~~~vP~I~~~GrkG 201 (231)
T 2afr_A 143 PTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKG 201 (231)
T ss_dssp HHHHHHHHHHHHHHCCCCSEEEECCCCSSSHHHHHHHHHHHHHTTSCCCCEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCCcccHHHHHHHHHhcccccCCCCCEEEEeCCCC
Confidence 45778889999764 589888887665444544444455543 799998765554
No 227
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=24.39 E-value=1.1e+02 Score=26.05 Aligned_cols=86 Identities=7% Similarity=-0.187 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcC--ccEEEEeCCcchH
Q 014091 27 GTLGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGL 102 (431)
Q Consensus 27 ~~~a~~l~~~L~~~GV--~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg--~gv~~~t~GpG~~ 102 (431)
+.-+..+.+.|++.++ +.||.-|=.....=.+.+.....+++.....|....-.-+-...... -.++++...|+..
T Consensus 46 ~~~a~~~~~~l~~~~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ly~~~~~~~l~~i~~~~~~~~~vllvGHnP~l~ 125 (186)
T 4hbz_A 46 VRAATAAGQWLRGHLPAVDVVVCSTAARTRQTLAATGISAQVRYRDELYGGGVDEILAEVAAVPADASTVLVVGHAPTIP 125 (186)
T ss_dssp HHHHHHHHHHHHHHSCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGGGTTCCHHHHHHHHHTSCTTCSEEEEEECTTHHH
T ss_pred HHHHHHhhhHhhhcccCCCccccCcchhHHHHHHhhcccccccccccccccChHHHHHHHHhccCCCCeeeecccCCCHH
Confidence 4567889999998876 59999998887777776654334444444434333222222222222 3688889999999
Q ss_pred HHHHHHHHhh
Q 014091 103 SVLNAIAGAY 112 (431)
Q Consensus 103 n~~~gl~~A~ 112 (431)
.++.-+....
T Consensus 126 ~l~~~L~~~~ 135 (186)
T 4hbz_A 126 ATGWELVRQS 135 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 8888776543
No 228
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=24.27 E-value=3.4e+02 Score=26.48 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.1
Q ss_pred ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEe
Q 014091 90 VGACVVTFTVGGLSVLNAIAGAYSENLPVICIV 122 (431)
Q Consensus 90 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~I~ 122 (431)
.++++++.|- +.+.+|...++|+|++-
T Consensus 346 v~~fvtH~G~------~S~~Eal~~GvP~i~~P 372 (454)
T 3hbf_A 346 VGVFLTHSGW------NSVLECIVGGVPMISRP 372 (454)
T ss_dssp EEEEEECCCH------HHHHHHHHHTCCEEECC
T ss_pred cCeEEecCCc------chHHHHHHcCCCEecCc
Confidence 4577777763 46788899999999985
No 229
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=24.23 E-value=86 Score=27.80 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhc-CCCEEEeCCccchhchHHHHHHHHHHhCCCeEe
Q 014091 224 AVEATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (431)
Q Consensus 224 ~~~~~~~~L~~a-~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~t 268 (431)
-++.+.++.+.+ .|+.|++|+|+.. +.+.+|.+.+|+.-+.
T Consensus 164 g~~~L~~Lv~~a~~ri~Im~GgGV~~----~Ni~~l~~~tGv~e~H 205 (224)
T 2bdq_A 164 NIKHIKALVEYANNRIEIMVGGGVTA----ENYQYICQETGVKQAH 205 (224)
T ss_dssp GHHHHHHHHHHHTTSSEEEECSSCCT----TTHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCH----HHHHHHHHhhCCCEEc
Confidence 344555555544 5899999999975 4466788888987666
No 230
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.22 E-value=1.4e+02 Score=27.46 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT 286 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~ 286 (431)
..+.+.+++.+ ++...++|... +.....+.+++++.++|+++.......+...+|++..+
T Consensus 69 ~~~~~~~l~~~-~~v~~iiG~~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~ 128 (366)
T 3td9_A 69 AANAAARAIDK-EKVLAIIGEVA--SAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRV 128 (366)
T ss_dssp HHHHHHHHHHT-SCCSEEEECSS--HHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEES
T ss_pred HHHHHHHHhcc-CCeEEEEccCC--chhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEE
Confidence 34444444444 45666666543 23567788899999999999765444444455665544
No 231
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=24.13 E-value=75 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEE-eCC--ccch-hchHHHHHHHHHHhCCCeEecCCC
Q 014091 227 ATADFLNKAVKPVLV-GGP--NIRV-AKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~-~G~--g~~~-~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
++.++|++.+--+|+ .=. +... ......|++.|...++|++||..+
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~lat 114 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMA 114 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHH
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHH
Confidence 688999887644444 222 2222 346789999999999999999763
No 232
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=24.13 E-value=88 Score=29.51 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchHHHHHHH
Q 014091 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAI 108 (431)
Q Consensus 29 ~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~n~~~gl 108 (431)
.-..+++.|++.+++.++...+.....-+..+ .+++++.... + +.+-|+.. -++++++|+ +.+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~--~~~v~~~~~~-~-----~~~~l~~a---d~~v~~~g~------~t~ 321 (412)
T 3otg_A 259 VLRAAIDGLAGLDADVLVASGPSLDVSGLGEV--PANVRLESWV-P-----QAALLPHV---DLVVHHGGS------GTT 321 (412)
T ss_dssp HHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC--CTTEEEESCC-C-----HHHHGGGC---SEEEESCCH------HHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCChhhhccC--CCcEEEeCCC-C-----HHHHHhcC---cEEEECCch------HHH
Confidence 44556677777777766665554412211122 2356666555 3 22223332 255666554 457
Q ss_pred HHhhhcCCcEEEE
Q 014091 109 AGAYSENLPVICI 121 (431)
Q Consensus 109 ~~A~~~~~Pvl~I 121 (431)
.+|...++|+|++
T Consensus 322 ~Ea~a~G~P~v~~ 334 (412)
T 3otg_A 322 LGALGAGVPQLSF 334 (412)
T ss_dssp HHHHHHTCCEEEC
T ss_pred HHHHHhCCCEEec
Confidence 9999999999987
No 233
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=24.07 E-value=1.8e+02 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=22.6
Q ss_pred EeCCcchHH---HHHHHHHhhhcCCcEEEEeCCC
Q 014091 95 VTFTVGGLS---VLNAIAGAYSENLPVICIVGGP 125 (431)
Q Consensus 95 ~t~GpG~~n---~~~gl~~A~~~~~Pvl~I~g~~ 125 (431)
+..|=|.++ ..-+|..|-..+.|||+|.-+.
T Consensus 150 ~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN 183 (629)
T 2o1x_A 150 AVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDN 183 (629)
T ss_dssp EEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred EEEchhhhhccHHHHHHHHHHhhCCCEEEEEECC
Confidence 334677765 4577888888889999997544
No 234
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=23.50 E-value=1.1e+02 Score=24.73 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccch----hchHHHHHHHHHHhCCCeEecC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRV----AKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~----~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
..+..+.+.....+.|+|++|.-... .-..+++.++++.+++|++.+.
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence 34444445555577899999876542 2246788999999999988754
No 235
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=23.39 E-value=53 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.6
Q ss_pred HHHHHHHHHHh--cCCCEEEeCCccch
Q 014091 224 AVEATADFLNK--AVKPVLVGGPNIRV 248 (431)
Q Consensus 224 ~~~~~~~~L~~--a~rpvI~~G~g~~~ 248 (431)
.+++++++|++ +++.|++.|.|+..
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISt 36 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGIST 36 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTG
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccch
Confidence 47789999997 89999999999854
No 236
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.17 E-value=2e+02 Score=23.68 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHHH
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLN 106 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~~ 106 (431)
-+.+++.|.+..-=++||+-++.... +...|.+ -+++.... ++.. ....+.--++++.|..|-+ +.+.
T Consensus 27 i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~-~~~~-------~~~~~~~d~vI~iS~sG~t~~~~~ 97 (186)
T 1m3s_A 27 ADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMH-MGFNAHIV-GEIL-------TPPLAEGDLVIIGSGSGETKSLIH 97 (186)
T ss_dssp HHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHH-TTCCEEET-TSTT-------CCCCCTTCEEEEECSSSCCHHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHh-cCCeEEEe-Cccc-------ccCCCCCCEEEEEcCCCCcHHHHH
Confidence 46677888887654666664443322 2222322 24444333 3321 1222223466666667765 6888
Q ss_pred HHHHhhhcCCcEEEEeCCCCC
Q 014091 107 AIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
.+..|+..+.|+|.||+....
T Consensus 98 ~~~~ak~~g~~vi~IT~~~~s 118 (186)
T 1m3s_A 98 TAAKAKSLHGIVAALTINPES 118 (186)
T ss_dssp HHHHHHHTTCEEEEEESCTTS
T ss_pred HHHHHHHCCCEEEEEECCCCC
Confidence 899999999999999987543
No 237
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.15 E-value=1.1e+02 Score=26.11 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCEEE-eCC--ccch-hchHHHHHHHHHHhCCCeEecCCC
Q 014091 227 ATADFLNKAVKPVLV-GGP--NIRV-AKAQKAFIELADATGYPIAIMPSG 272 (431)
Q Consensus 227 ~~~~~L~~a~rpvI~-~G~--g~~~-~~a~~~l~~lae~~~~Pv~tt~~g 272 (431)
++.++|++.+--+|+ .=. +... ......|++.|...++|++||..+
T Consensus 89 qI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~Tnlat 138 (178)
T 1vmd_A 89 QIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRST 138 (178)
T ss_dssp HHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHH
T ss_pred hHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHH
Confidence 688999987755554 222 2222 347899999999999999999863
No 238
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=23.10 E-value=58 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHh--cCCCEEEeCCccchh
Q 014091 221 LEAAVEATADFLNK--AVKPVLVGGPNIRVA 249 (431)
Q Consensus 221 ~~~~~~~~~~~L~~--a~rpvI~~G~g~~~~ 249 (431)
.+..+++++++|++ +++.||++|.|+..+
T Consensus 12 ~~~~i~~l~~~i~~~~a~~IVvlTGAGISte 42 (361)
T 1q14_A 12 TEMSVRKIAAHMKSNPNAKVIFMVGAGISTS 42 (361)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEECGGGTGG
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeCcccchh
Confidence 35578999999999 999999999999654
No 239
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.98 E-value=1e+02 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHh-----cCCCEEEeCCccchhchHHHHHHHHHHhCCCeEec
Q 014091 223 AAVEATADFLNK-----AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (431)
Q Consensus 223 ~~~~~~~~~L~~-----a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt 269 (431)
+.+++++++|.+ ++| +++.|.|.... ....+.....++|.++...
T Consensus 42 ~~i~~~~~~i~~~a~~~a~~-I~i~G~G~S~~-~A~~~~~~l~~lg~~~~~~ 91 (220)
T 3etn_A 42 DAYEKAVELIVEQIHRKKGK-LVTSGMGKAGQ-IAMNIATTFCSTGIPSVFL 91 (220)
T ss_dssp THHHHHHHHHHHHTTTTCCC-EEEECSHHHHH-HHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHhHhhccCCE-EEEEEecHHHH-HHHHHHHHHHhcCCcEEEe
Confidence 467888999988 555 77778887543 3344444445688888764
No 240
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=22.44 E-value=91 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHHcCCCEEEecCCCchH
Q 014091 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (431)
Q Consensus 22 ~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~ 54 (431)
+++.++.+++...+.|+++||+|=.++-+.+=.
T Consensus 15 gS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~ 47 (174)
T 3lp6_A 15 GSDSDWPVMADAAAALAEFDIPAEVRVVSAHRT 47 (174)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTC
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 456789999999999999999999999996543
No 241
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=22.07 E-value=51 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.5
Q ss_pred EEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 239 vI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+|++|..++. ..+++.+.++..|+||..-.
T Consensus 56 vvLLgPQV~y--~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 56 LIILAPQVRS--YYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp EEEECGGGGG--GHHHHHHHHTTTTCEEEECC
T ss_pred EEEEChHHHH--HHHHHHHHhhhcCCcEEEeC
Confidence 7788887765 66778888877888887644
No 242
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=22.03 E-value=1.8e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee
Q 014091 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT 286 (431)
Q Consensus 225 ~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~ 286 (431)
...+++++. ++...++|.... .....+..++++.++|+++....-..+.+..+++..+
T Consensus 61 ~~~a~~l~~--~~V~aiiG~~~S--~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~ 118 (395)
T 3h6g_A 61 SKKACDQLS--LGVAAIFGPSHS--SSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSL 118 (395)
T ss_dssp HHHHHHHHH--HCCSCEECCSSH--HHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEE
T ss_pred HHHHHHhhh--cCcEEEECCCCh--hHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEe
Confidence 345566665 366677786553 4677889999999999998655444455556666655
No 243
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.96 E-value=1.3e+02 Score=22.66 Aligned_cols=47 Identities=30% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeC-----Cccchh---chHHHHHHHHHHhCCCeEe
Q 014091 221 LEAAVEATADFLNKAVKPVLVGG-----PNIRVA---KAQKAFIELADATGYPIAI 268 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~rpvI~~G-----~g~~~~---~a~~~l~~lae~~~~Pv~t 268 (431)
....++++.+++++-+--.|++| .|.... ...+-.++|.++ ++||..
T Consensus 36 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~ 90 (98)
T 1iv0_A 36 LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVEL 90 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEE
Confidence 35577888888888766689999 444321 233444455555 788864
No 244
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=21.95 E-value=1.2e+02 Score=25.43 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=22.1
Q ss_pred HHHHHHHH-cCCC----EEEecCCCchHHHHH
Q 014091 32 HLARRLVE-IGAK----DVFSVPGDFNLTLLD 58 (431)
Q Consensus 32 ~l~~~L~~-~GV~----~vFgvpG~~~~~l~~ 58 (431)
--.+.|++ +|++ .+|-+||...+|+.-
T Consensus 38 ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa 69 (159)
T 1kz1_A 38 GAVETMIEKHDVKLENIDIESVPGSWELPQGI 69 (159)
T ss_dssp HHHHHHHHHHCCCGGGEEEEECSSGGGHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 34478888 9986 499999999999874
No 245
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=21.89 E-value=95 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 223 ~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
...|--+|+..=++.||.++-.|+.+.=....-.+..|..|+||++.-
T Consensus 145 ~t~DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy~ 192 (316)
T 4ex8_A 145 DTLDISPDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGYR 192 (316)
T ss_dssp HHCCBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEEEET
T ss_pred CCcchhhhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEEEec
Confidence 334444677777899999999999987778888999999999999864
No 246
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=21.52 E-value=2.3e+02 Score=24.41 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=52.5
Q ss_pred HHHHHHHHHHH-----cCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcch
Q 014091 29 LGRHLARRLVE-----IGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (431)
Q Consensus 29 ~a~~l~~~L~~-----~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~ 101 (431)
--+.+++.|.+ .+-=++||+-++.... +...|.+ -++..+.. ++.. ++..-...++.--++++.|..|-
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~-lg~~~~~~-~~~~--~~~~~~~~~~~~DlvI~iS~SG~ 118 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCS-TGIPSVFL-HPSE--AQHGDLGILQENDLLLLISNSGK 118 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHH-TTCCEEEC-CTTG--GGBTGGGGCCTTCEEEEECSSSC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHh-cCCcEEEe-CCHH--HHHhhhccCCCCCEEEEEcCCCC
Confidence 44566777777 5656677765444332 2222332 24433332 2111 11111223332345555666666
Q ss_pred H-HHHHHHHHhhh--cCCcEEEEeCCCC
Q 014091 102 L-SVLNAIAGAYS--ENLPVICIVGGPN 126 (431)
Q Consensus 102 ~-n~~~gl~~A~~--~~~Pvl~I~g~~~ 126 (431)
+ ..+..+..|+. .++++|.||+...
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 6 78888889999 9999999998644
No 247
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=21.36 E-value=88 Score=29.29 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecCCCcccCCCCCCCccee
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT 286 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~G~ 286 (431)
.+..+.+++.+ ++...++|... +.....+..++++.++|+++...+...+.+.+|++..+
T Consensus 60 a~~~a~~Li~~-d~V~aiiG~~~--S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~ 119 (371)
T 4f06_A 60 SKALAQELIVK-EKVQYLAGLYF--TPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRT 119 (371)
T ss_dssp HHHHHHHHHHT-SCCSEEEECCS--HHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEES
T ss_pred HHHHHHHHHhc-CCCEEEEeccc--ccchHHHHHHHHhhcCCccccccccchhcccCCcceec
Confidence 34444455554 56666677644 34678888999999999999776555555556766553
No 248
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=21.36 E-value=5.1e+02 Score=27.88 Aligned_cols=174 Identities=13% Similarity=0.029 Sum_probs=86.3
Q ss_pred eEEe-cCchhHH-H---Hhhhhhhhhc-C-ccEEEEeCCcchHHHHHHHHHh-hhcCCcEEEEeCCCCCcccCCCceeee
Q 014091 67 NLVG-CCNELNA-G---YAADGYARSR-G-VGACVVTFTVGGLSVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHH 138 (431)
Q Consensus 67 ~~v~-~~hE~~A-~---~~A~gyar~t-g-~gv~~~t~GpG~~n~~~gl~~A-~~~~~Pvl~I~g~~~~~~~~~~~~~~~ 138 (431)
|++. ...|+++ + .+|.|||... + ..+++..+.=+..-+.--+..+ -..+.++++ .+.......+.+...|+
T Consensus 563 R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~tHq 641 (886)
T 2qtc_A 563 QILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQHE 641 (886)
T ss_dssp CBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTTTC
T ss_pred ceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCccC
Confidence 4554 7889997 4 6899999887 4 4555544333332222222222 233445554 44332222233223332
Q ss_pred ecCCCChHHHHHHHhhheee-EEEcCCcchHHHHHHHHHHHhhhCCCc----EEEEEccCCCCCCCCCCCCCCCCccCCC
Q 014091 139 TIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKP----VYISISCNLPGIPHPTFARDPVPFFLAP 213 (431)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~GP----v~l~iP~dv~~~~~~~~~~~~~~~~~~~ 213 (431)
. .. ...+++.+-.. .+...++.++..+++.|++.. .|| |++-+|..-.. ...+ . .+.
T Consensus 642 ~-----~~-~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~---~gP~~e~v~i~~~r~~~~----~~~p-~----~~~ 703 (886)
T 2qtc_A 642 D-----GH-SHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM---YGEKQENVYYYITTLNEN----YHMP-A----MPE 703 (886)
T ss_dssp C-----SC-HHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH---HSTTCCCCEEEEECCSCC----BCCC-C----CCT
T ss_pred C-----cc-hHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCccc----cCCC-C----CCc
Confidence 1 12 34577777543 344555566666666665532 378 99999864211 1000 0 000
Q ss_pred CCCChhhHHHHHHHHHHHHHhc---CCCEEEeCCccchhchHHHHHHHHHHhCCC
Q 014091 214 KVSNQLGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~a---~rpvI~~G~g~~~~~a~~~l~~lae~~~~P 265 (431)
. ....+-.=+..++.. +.-|.|++.|.--..+.++...|++.+|+-
T Consensus 704 -----~-~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~ 752 (886)
T 2qtc_A 704 -----G-AEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVG 752 (886)
T ss_dssp -----T-CHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEE
T ss_pred -----c-hhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCc
Confidence 0 011111111223333 134777777776556777788888875644
No 249
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=21.29 E-value=60 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCEEEeCCccch
Q 014091 224 AVEATADFLNKAVKPVLVGGPNIRV 248 (431)
Q Consensus 224 ~~~~~~~~L~~a~rpvI~~G~g~~~ 248 (431)
.+++++++|+++++.|++.|.|+..
T Consensus 173 ~i~~l~~~L~~ak~IVVLTGAGIST 197 (492)
T 4iao_A 173 TIDHFIQKLHTARKILVLTGAGVST 197 (492)
T ss_dssp SHHHHHHHHHHCSCEEEEECGGGGG
T ss_pred HHHHHHHHHHhCCcEEEEeCccccc
Confidence 4778999999999999999999854
No 250
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.16 E-value=2.1e+02 Score=21.53 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+++.+.|++.+--+++.-..+.. .....+..+++..++|++...
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHTTCCEEEES
T ss_pred hhhHHHHhcCceeEEEEeccccc-cchhhhcccccccCCCeeeec
Confidence 35667777766554444444433 367788999999999998754
No 251
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=21.16 E-value=2.1e+02 Score=23.52 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=19.5
Q ss_pred CCCCCcccHHHHHHHHHHHcCCCEEEec
Q 014091 21 RGGASVGTLGRHLARRLVEIGAKDVFSV 48 (431)
Q Consensus 21 ~~~~~~~~~a~~l~~~L~~~GV~~vFgv 48 (431)
+++.+....-+.+++.|++.| .||..
T Consensus 12 f~~~e~~~~~~~i~~~L~~~G--~Vl~~ 37 (152)
T 4fyk_A 12 RGGREDQALYARIVSRLRRYG--KVLTE 37 (152)
T ss_dssp TTCCTTHHHHHHHHHHHTTTS--EECCC
T ss_pred CCcHHHHHHHHHHHHHHHHcC--ccccc
Confidence 444555677799999999999 58763
No 252
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=20.82 E-value=2.1e+02 Score=29.93 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=55.6
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCc-EEEEeCCCCCcccCCCceeeeecCCCChHHHHHHHhhheeeEEEcCCcc
Q 014091 91 GACVVTFTVGGLS---VLNAIAGAYSENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG 166 (431)
Q Consensus 91 gv~~~t~GpG~~n---~~~gl~~A~~~~~P-vl~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~ 166 (431)
..+++..|=|.++ ..-++..|-..+.| +|+|.-+......+. ..... ..|....|+.+-=...++.+-.
T Consensus 169 ~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~---~~~~~----~~~~~~~~~a~G~~~~~V~DG~ 241 (700)
T 3rim_A 169 HYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDD---TNIAL----CEDTAARYRAYGWHVQEVEGGE 241 (700)
T ss_dssp CCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEE---GGGTC----CCCHHHHHHHHTCEEEEEECTT
T ss_pred CeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccc---hhhcc----chhHHHHHHHcCCeEEEECCCC
Confidence 3444455788775 23367778888997 888875443221111 00011 2356778888743334552333
Q ss_pred hHHHHHHHHHHHhhh-CCCcEEEEEccCC
Q 014091 167 DAHELIDTAISTALK-ESKPVYISISCNL 194 (431)
Q Consensus 167 ~~~~~i~~A~~~A~~-~~GPv~l~iP~dv 194 (431)
++ +.|.+|++.|.. ..+|+.|.+---.
T Consensus 242 D~-~al~~Al~~A~~~~~~P~lI~~~T~k 269 (700)
T 3rim_A 242 NV-VGIEEAIANAQAVTDRPSFIALRTVI 269 (700)
T ss_dssp CH-HHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred CH-HHHHHHHHHHHHcCCCCEEEEEEEEe
Confidence 33 345667777766 5699999987544
No 253
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=20.80 E-value=2.3e+02 Score=21.18 Aligned_cols=44 Identities=7% Similarity=0.240 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 226 ~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+++.+.|++.+--+++.-..+.. .....+..+++..++|++...
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~ 67 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVG 67 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeC
Confidence 45667777666444444444433 367789999999999998754
No 254
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=20.78 E-value=96 Score=24.49 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCEEEecCCCchHHHHHhhhcCCCceEEe
Q 014091 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG 70 (431)
Q Consensus 32 ~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~~i~~v~ 70 (431)
.+++.+.+.|++.|.--+|.....+.+...+ .+|+++.
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~-~Girvv~ 110 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTENEELEEILSE-NGIEPVI 110 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCCCHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCChHHHHHHHHH-cCCeEEC
Confidence 4567777889999999999888888887776 4899884
No 255
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.69 E-value=2.3e+02 Score=23.16 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCCchHH--HHHhhhcCCCceEEecCchhHHHHhhhhhhhhcCccEEEEeCCcchH-HHHH
Q 014091 30 GRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLN 106 (431)
Q Consensus 30 a~~l~~~L~~~GV~~vFgvpG~~~~~--l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~gv~~~t~GpG~~-n~~~ 106 (431)
-+.+++.|.+..-=++||.-++.... +...|.+ -++..+.. .+.. ....+.--++++.|..|-+ +.+.
T Consensus 30 i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~-~~~~-------~~~~~~~d~vi~iS~sG~t~~~~~ 100 (180)
T 1jeo_A 30 LDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMH-LGFKSYFV-GETT-------TPSYEKDDLLILISGSGRTESVLT 100 (180)
T ss_dssp HHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHH-TTCCEEET-TSTT-------CCCCCTTCEEEEEESSSCCHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHH-cCCeEEEe-CCCc-------cccCCCCCEEEEEeCCCCcHHHHH
Confidence 35677788887655666665444322 2222322 24444433 2320 1222222344445555654 7888
Q ss_pred HHHHhhhcCCcEEEEeCCCCC
Q 014091 107 AIAGAYSENLPVICIVGGPNS 127 (431)
Q Consensus 107 gl~~A~~~~~Pvl~I~g~~~~ 127 (431)
.+..|+..+.|+|.||+....
T Consensus 101 ~~~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 101 VAKKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp HHHHHHTTCSCEEEEESSCCG
T ss_pred HHHHHHHCCCcEEEEeCCCCh
Confidence 899999999999999987543
No 256
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=20.68 E-value=1e+02 Score=29.74 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=23.4
Q ss_pred cCCCEEEeCC-ccchhchHHHHHHHHHHhCCCeE
Q 014091 235 AVKPVLVGGP-NIRVAKAQKAFIELADATGYPIA 267 (431)
Q Consensus 235 a~rpvI~~G~-g~~~~~a~~~l~~lae~~~~Pv~ 267 (431)
.+|++|+.|. .....+..+.+.+..+..++.+.
T Consensus 43 ~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~ 76 (407)
T 1vlj_A 43 IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV 76 (407)
T ss_dssp CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEECchHHhhccHHHHHHHHHHHcCCeEE
Confidence 4789999984 44444567788887777788764
No 257
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=20.49 E-value=2.4e+02 Score=23.40 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcC---------CCEEEeCCccch------------------hchHHHHHHHHHHhCCCeEecCCC-
Q 014091 221 LEAAVEATADFLNKAV---------KPVLVGGPNIRV------------------AKAQKAFIELADATGYPIAIMPSG- 272 (431)
Q Consensus 221 ~~~~~~~~~~~L~~a~---------rpvI~~G~g~~~------------------~~a~~~l~~lae~~~~Pv~tt~~g- 272 (431)
..+.++++++.|++.. ..+|+++.-... ....+.++++|++.+++++.....
T Consensus 107 ~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~ 186 (216)
T 2q0q_A 107 IALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKTTELARVYSALASFMKVPFFDAGSVI 186 (216)
T ss_dssp HHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHHHHHTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGGTC
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcchhhhccHHHHHHHHHHHHHHHHHHcCCcEEchhHhc
Confidence 4567888888887764 456666432111 123567899999999999986542
Q ss_pred -cccCCCCCCCcce
Q 014091 273 -KGLVPEHHPHFIG 285 (431)
Q Consensus 273 -kg~~~~~hp~~~G 285 (431)
.-..|.-||.-.|
T Consensus 187 ~~~~~Dg~Hpn~~G 200 (216)
T 2q0q_A 187 STDGVDGIHFTEAN 200 (216)
T ss_dssp CCCSTTSSSCCHHH
T ss_pred ccCCCCccCcCHHH
Confidence 1222334665554
No 258
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=20.34 E-value=70 Score=30.05 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCccchhchHHHHHHHHHHhCCCeEecC
Q 014091 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (431)
Q Consensus 222 ~~~~~~~~~~L~~a~rpvI~~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 270 (431)
+...|--+|+..=++.||.++..|+.+.=....-.+..|.+|+||++.-
T Consensus 164 e~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~ 212 (335)
T 4gim_A 164 EHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQ 212 (335)
T ss_dssp HHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEET
T ss_pred CCCccccchHHHhccCCeEEEeecchhhccchhHHHHHHhcCceEEEec
Confidence 3444445666666778999999999877677888899999999999863
Done!