BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014092
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ME7|A Chain A, Crystal Structure Of Putative Electron Transport Protein
           Aq_2194 From Aquifex Aeolicus Vf5
 pdb|3ME7|B Chain B, Crystal Structure Of Putative Electron Transport Protein
           Aq_2194 From Aquifex Aeolicus Vf5
 pdb|3ME8|A Chain A, Crystal Structure Of Putative Electron Transfer Protein
           Aq_2194 From Aquifex Aeolicus Vf5
 pdb|3ME8|B Chain B, Crystal Structure Of Putative Electron Transfer Protein
           Aq_2194 From Aquifex Aeolicus Vf5
          Length = 170

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)

Query: 284 DIFVVNSFGSGFQALFVLLFLPFLSNLKGIPFAELPLYLKSGAGCLL 330
           DI +V+S+G+ FQ          L NLKG P    P+Y    A C L
Sbjct: 10  DITLVDSYGNEFQ----------LKNLKGKPIILSPIYTHCRAACPL 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,216,758
Number of Sequences: 62578
Number of extensions: 293975
Number of successful extensions: 524
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 1
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)