Query 014092
Match_columns 431
No_of_seqs 165 out of 529
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.7 6.5E-05 2.2E-09 62.7 7.2 71 164-234 33-104 (110)
2 2i68_A Protein EMRE; transmemb 97.6 6.1E-05 2.1E-09 65.5 4.7 70 164-233 33-103 (137)
3 2i68_A Protein EMRE; transmemb 96.1 0.0032 1.1E-07 54.6 3.5 63 356-422 43-105 (137)
4 3b5d_A Multidrug transporter E 94.7 0.078 2.7E-06 43.8 7.1 60 359-422 46-105 (110)
5 2jpw_A Troponin I, cardiac mus 24.7 16 0.00056 22.7 0.1 15 13-27 13-28 (32)
6 3b9w_A Ammonium transporter fa 13.6 8.7E+02 0.03 24.0 9.9 20 280-299 291-310 (407)
7 2hac_A T-cell surface glycopro 11.8 1.5E+02 0.0052 18.8 2.3 27 190-216 5-31 (33)
8 2b1y_A Hypothetical protein AT 6.6 7.2E+02 0.025 19.9 5.0 43 21-76 46-92 (104)
9 2l2t_A Receptor tyrosine-prote 5.1 2.5E+02 0.0085 19.0 1.1 17 406-422 21-37 (44)
10 2b2h_A AMT-1, ammonium transpo 5.0 2E+03 0.069 21.2 12.3 20 280-299 296-315 (399)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.72 E-value=6.5e-05 Score=62.75 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCccHHHHH-hhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEecc
Q 014092 164 FLFIGMLEALGVASGMAAAAMLPGPAIPIL-SQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVAS 234 (431)
Q Consensus 164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL-~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~s 234 (431)
.+...++.....++...++.+.|.+...-+ ++..+.++++++++++||+++..|++|+.++++|++++...
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 333345567788889999999999998666 99999999999999999999999999999999999887543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.55 E-value=6.1e-05 Score=65.51 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCccHHHHH-hhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEEec
Q 014092 164 FLFIGMLEALGVASGMAAAAMLPGPAIPIL-SQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVAVA 233 (431)
Q Consensus 164 ~~iiglld~~~~~l~~~g~~~~~~~~~~IL-~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv~~ 233 (431)
.++-.++..++.++...++.+.|.+....+ ++..+++++++++++++|+++..|++|++++++|++++..
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334455567788899999999999977666 9999999999999999999999999999999999998754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.12 E-value=0.0032 Score=54.56 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=36.7
Q ss_pred HHHHHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCC
Q 014092 356 FNISMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ 422 (431)
Q Consensus 356 ~n~~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~ 422 (431)
..++....+|+.+...+..+..-..|+.+.+++..+ .||++++.+++|.++|++|+++.+..+
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~----lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF----FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH----HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334445667777777665542345688888777654 499999999999999999999998654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.69 E-value=0.078 Score=43.78 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHHHhcccchHHHHHHHHhHHHhhhHhhhcccCCCCCCCCCcHHHHHHHHHHHhhheeecCCC
Q 014092 359 SMLRLMKISSAVVSSLVVMLSVPIAIYVLSLPLPYLPEGASLSPFFLFGSVILLLGLTLYNLPQ 422 (431)
Q Consensus 359 ~~~~l~k~~sA~~~sl~~~l~vPl~~~~fs~~~~~l~~gE~ls~~~liG~~lI~~Gv~lYn~~~ 422 (431)
+....+|+.+...+.-...-..|+...+.+..+ .+|++++.+++|.++++.|+++.+..+
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~----~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF----FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344566776666554432123466666666544 499999999999999999999998765
No 5
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=24.73 E-value=16 Score=22.75 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=11.3
Q ss_pred cCCCcccccccc-ccc
Q 014092 13 SSKPPLLKRRSH-NFY 27 (431)
Q Consensus 13 ~~~~~~~~~~~~-~~~ 27 (431)
.|+|+-++|||. ||-
T Consensus 13 ~PaP~p~RRrSSANYR 28 (32)
T 2jpw_A 13 QPAPAPVRRRSSANYR 28 (32)
T ss_dssp CCCCCCCCCTTHHHHH
T ss_pred CCCCcccccccccccc
Confidence 478888999986 553
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=13.63 E-value=8.7e+02 Score=24.04 Aligned_cols=20 Identities=0% Similarity=-0.041 Sum_probs=14.4
Q ss_pred CCccCceeehhhhhhHHHHH
Q 014092 280 GKSLDIFVVNSFGSGFQALF 299 (431)
Q Consensus 280 ~~~~d~~~l~~w~~l~q~l~ 299 (431)
++.+|.+.+++..++++.+.
T Consensus 291 DD~l~a~~vHgv~Gi~G~l~ 310 (407)
T 3b9w_A 291 IDTCGVHNLHGLPGLLGGFS 310 (407)
T ss_dssp CCTTCHHHHTTHHHHHHHHH
T ss_pred CCCCCCeecchHHHHHHHHH
Confidence 66799999999655555554
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=11.82 E-value=1.5e+02 Score=18.85 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.6
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCccchh
Q 014092 190 IPILSQTFLVWQLGFSAVLLGKKFSVT 216 (431)
Q Consensus 190 ~~IL~qs~i~~T~llS~~fLk~r~~~~ 216 (431)
=-+|.+...+...++..+++|+|+.+.
T Consensus 5 CYiLDgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 5 CYLLDGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred EeehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345666777777888888888887653
No 8
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=6.61 E-value=7.2e+02 Score=19.85 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=22.7
Q ss_pred cccccccccccccccccCCCCCC-CCCCCcccccccceeeee-cc--CCCCccccccccc
Q 014092 21 RRSHNFYGAKSRSLISMPADGFP-PCRSPLKYNFARGITSIL-YS--SRRNTNFTARAST 76 (431)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (431)
.+.|.|+|-.. |.+| ++.-|.+ |.-|++ +. .....+.+++.-.
T Consensus 46 g~~~~~~GG~~--------~~~P~~itVP~s-----G~W~vvID~~g~~~~~~~SI~vip 92 (104)
T 2b1y_A 46 LLDFKYLGGVA--------KKSPIRIAVPET-----MHWHLIIDAEGHSGLAESSVKMLP 92 (104)
T ss_dssp HTTCCCSCCCC--------CSSSCCCCCCSS-----SCCCCCCCCTTSSSCCCCCCCCCC
T ss_pred cCceeEecccc--------ccCCEEEECCCC-----ceEEEEEecCCcCCcceeeEEEec
Confidence 45577766554 5556 6777766 433332 33 3445555555443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.07 E-value=2.5e+02 Score=19.02 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=8.1
Q ss_pred HHHHHHHhhheeecCCC
Q 014092 406 FGSVILLLGLTLYNLPQ 422 (431)
Q Consensus 406 iG~~lI~~Gv~lYn~~~ 422 (431)
++++++..++++|-.++
T Consensus 21 ~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 21 FILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33444555555554443
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=5.04 E-value=2e+03 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=14.2
Q ss_pred CCccCceeehhhhhhHHHHH
Q 014092 280 GKSLDIFVVNSFGSGFQALF 299 (431)
Q Consensus 280 ~~~~d~~~l~~w~~l~q~l~ 299 (431)
|+.+|.+.+++..+.++.+.
T Consensus 296 DD~l~a~~vHgv~Gi~G~l~ 315 (399)
T 2b2h_A 296 DESLDAWAIHGIGGLWGSVA 315 (399)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCceeccchhhHHHHHH
Confidence 66789999999555555544
Done!