Query 014092
Match_columns 431
No_of_seqs 165 out of 529
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 05:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014092.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014092hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.7 98 0.0071 26.6 5.0 65 163-231 4-68 (248)
2 d2b1ya1 b.156.1.1 (A:4-104) Hy 8.8 3.1E+02 0.022 20.0 5.6 52 21-82 43-95 (101)
3 d2iuba2 f.17.3.1 (A:286-349) M 8.3 1.4E+02 0.01 19.6 3.3 9 378-386 15-23 (64)
4 d1wisa1 b.1.2.1 (A:8-118) Side 5.6 1.2E+02 0.009 21.0 1.8 28 59-86 74-103 (111)
5 d2haza1 b.1.2.1 (A:489-589) Ne 4.8 1.4E+02 0.0099 20.6 1.6 27 59-85 64-92 (101)
6 d2crma1 b.1.2.1 (A:8-114) Fibr 4.3 1.6E+02 0.012 20.3 1.7 26 59-84 70-97 (107)
7 d2ic2a1 b.1.2.1 (A:466-572) He 4.1 1.5E+02 0.011 20.7 1.3 27 58-84 69-97 (107)
8 d1cfba1 b.1.2.1 (A:610-709) Ne 4.1 1.2E+02 0.0084 20.9 0.6 26 60-85 65-92 (100)
9 d2cspa1 b.1.2.1 (A:8-124) Rim 3.3 2E+02 0.014 20.4 1.5 19 67-85 83-101 (117)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 3.3 4.3E+02 0.032 22.1 4.2 35 186-220 57-93 (447)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.67 E-value=98 Score=26.59 Aligned_cols=65 Identities=14% Similarity=-0.006 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCccHHHHHhhhhHHHHHHHHHHHhcCccchhHHHHHHHHhhheeEE
Q 014092 163 RFLFIGMLEALGVASGMAAAAMLPGPAIPILSQTFLVWQLGFSAVLLGKKFSVTQIAGCLLVATGVGVA 231 (431)
Q Consensus 163 ~~~iiglld~~~~~l~~~g~~~~~~~~~~IL~qs~i~~T~llS~~fLk~r~~~~qiiG~~lv~~GV~vv 231 (431)
|++++|+++++..++.......-.- .+-...++.++++-++++.||...+|++-=.+++..+.++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~----~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEY----LFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 68 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCH----HHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchH----HHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHH
Confidence 5788999998877755444332221 1223456677777889999999999988666666655554
No 2
>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.84 E-value=3.1e+02 Score=20.00 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=27.1
Q ss_pred cccccccccccccccccCCCCCC-CCCCCcccccccceeeeeccCCCCcccccccccCCCCCC
Q 014092 21 RRSHNFYGAKSRSLISMPADGFP-PCRSPLKYNFARGITSILYSSRRNTNFTARASTDDGNSP 82 (431)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (431)
.|+|.|+|-. .+-.| ++.-|.+=.+-..+ -..+.+-..|.+|+.-...++++
T Consensus 43 g~~~~y~GG~--------~~ksPvri~VP~tG~W~lvV--D~~G~~g~~~sSVkvi~~~~~~~ 95 (101)
T d2b1ya1 43 LLDFKYLGGV--------AKKSPIRIAVPETMHWHLII--DAEGHSGLAESSVKMLPAQPQAT 95 (101)
T ss_dssp HTTCCCSCCC--------CCSSSCCCCCCSSSCCCCCC--CCTTSSSCCCCCCCCCCCCCCCC
T ss_pred CCcceEeccc--------cccCceEEEcCCCceEEEEE--ECCCCcEEEEEEEEEecCCCCcc
Confidence 4678888764 34445 55566652222222 11245555677777655555433
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.33 E-value=1.4e+02 Score=19.56 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=4.9
Q ss_pred hHHHhhhHh
Q 014092 378 LSVPIAIYV 386 (431)
Q Consensus 378 l~vPl~~~~ 386 (431)
+..|.+.+.
T Consensus 15 iflP~t~i~ 23 (64)
T d2iuba2 15 IFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 445666553
No 4
>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.57 E-value=1.2e+02 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=17.9
Q ss_pred eeeccCCCCc--ccccccccCCCCCCCCCC
Q 014092 59 SILYSSRRNT--NFTARASTDDGNSPQTAS 86 (431)
Q Consensus 59 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 86 (431)
+.+.|....+ +|+|+|..+.+.+++..+
T Consensus 74 ~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~ 103 (111)
T d1wisa1 74 MEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 103 (111)
T ss_dssp EEECSCCTTSEECCCCEEECSSCBCCCCCC
T ss_pred EEeCCCCCCCEEEEEEEEEcCCcCCCCcCC
Confidence 5555655444 677888887777665544
No 5
>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.76 E-value=1.4e+02 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=18.3
Q ss_pred eeeccCCCCcc--cccccccCCCCCCCCC
Q 014092 59 SILYSSRRNTN--FTARASTDDGNSPQTA 85 (431)
Q Consensus 59 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 85 (431)
+.+.|....+. |+|+|..+.+.+++++
T Consensus 64 ~~i~~L~p~t~Y~frV~A~N~~G~g~~S~ 92 (101)
T d2haza1 64 VTIVGLKPETTYAVRLAALNGKGLGEISA 92 (101)
T ss_dssp EEECSCCTTCEEEEEEEEEETTEECCCCC
T ss_pred EEecCCCCCeEEEEEEEEEeCCcCcCCCC
Confidence 55666666665 7888888777666554
No 6
>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.30 E-value=1.6e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=17.7
Q ss_pred eeeccCCCCcc--cccccccCCCCCCCC
Q 014092 59 SILYSSRRNTN--FTARASTDDGNSPQT 84 (431)
Q Consensus 59 ~~~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (431)
|.+.|.+..+. |+|+|..+.+.++++
T Consensus 70 ~~i~~L~p~t~Y~~rV~A~n~~G~s~~S 97 (107)
T d2crma1 70 HLCDRLNPGCFYRLRVYCISDGGQSAVS 97 (107)
T ss_dssp EEECSCCTTSCEEEEEEEEETTEECCCC
T ss_pred EEEeccCCCCEEEEEEEEECCCcCcCCC
Confidence 66677776665 777787777765544
No 7
>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.10 E-value=1.5e+02 Score=20.70 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=17.7
Q ss_pred eeeeccCCCCc--ccccccccCCCCCCCC
Q 014092 58 TSILYSSRRNT--NFTARASTDDGNSPQT 84 (431)
Q Consensus 58 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 84 (431)
++.+.|.+..+ .|+|+|-.+.+.+++.
T Consensus 69 ~~~i~~L~p~t~Y~frV~A~N~~G~s~~S 97 (107)
T d2ic2a1 69 TASVTDLKPQHTYRFRILAVYSNNDNKES 97 (107)
T ss_dssp EEEECSCCSSEEEEEEEEEEETTSCEEEC
T ss_pred EEEECCCcCCcEEEEEEEEEcCCCCCCCC
Confidence 46667777777 5667777776765543
No 8
>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}
Probab=4.05 E-value=1.2e+02 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=15.7
Q ss_pred eeccCCCCc--ccccccccCCCCCCCCC
Q 014092 60 ILYSSRRNT--NFTARASTDDGNSPQTA 85 (431)
Q Consensus 60 ~~~~~~~~~--~~~~~~~~~~~~~~~~~ 85 (431)
.+.+....+ .|+|+|..+.+.++++.
T Consensus 65 ~~~~L~p~t~Y~frV~A~n~~G~g~~S~ 92 (100)
T d1cfba1 65 FVVQMSPWANYTFRVIAFNKIGASPPSA 92 (100)
T ss_dssp EEEECCSSEEEEEEEEEEETTEECCCCC
T ss_pred EEecCCCCCEEEEEEEEEeCCcCCCCcC
Confidence 334555444 56777777777666544
No 9
>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.35 E-value=2e+02 Score=20.44 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=13.2
Q ss_pred CcccccccccCCCCCCCCC
Q 014092 67 NTNFTARASTDDGNSPQTA 85 (431)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (431)
.=.|+|||.++.++++.++
T Consensus 83 ~Y~v~V~A~n~~G~s~~S~ 101 (117)
T d2cspa1 83 AKGVTVRTLSAQGESVDSA 101 (117)
T ss_dssp CSCBEEEEEESSCCCCCCS
T ss_pred EEEEEEEEEcCCCcCCCCC
Confidence 3456888988888765443
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=4.3e+02 Score=22.09 Aligned_cols=35 Identities=0% Similarity=-0.218 Sum_probs=16.0
Q ss_pred CccHHHHHhhhhHHHHHHHHHH--HhcCccchhHHHH
Q 014092 186 PGPAIPILSQTFLVWQLGFSAV--LLGKKFSVTQIAG 220 (431)
Q Consensus 186 ~~~~~~IL~qs~i~~T~llS~~--fLk~r~~~~qiiG 220 (431)
+.+...++........++.+.+ .+-||+.+++.+-
T Consensus 57 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 93 (447)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 3344444444433333333332 2456666666543
Done!