BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014093
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
 pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
          Length = 468

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 290 KFAEYYNVLEQIL---GVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSA 337
           KF++++ VLE +    GV I   KDLK  +  K +EL K     +C+T+ A
Sbjct: 281 KFSKWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVDA 331


>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
           Sah
 pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Sinapaldehyde
 pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Sinapaldehyde
 pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Sinapaldehyde
 pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Sinapaldehyde
 pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Coniferaldehyde
 pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Coniferaldehyde
 pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Coniferaldehyde
 pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
           With S- Adenosyl-L-Homocysteine And Coniferaldehyde
          Length = 364

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 365 YLVEATEEASVAYNKAV-TRLREYQGVDPRFD---NIARQYHDIV--KKL 408
           YL +A  +  + +NKA      EY G DPRF+   N   + H I+  KKL
Sbjct: 143 YLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKL 192


>pdb|1K53|A Chain A, Monomeric Protein L B1 Domain With A G15a Mutation
 pdb|1K53|B Chain B, Monomeric Protein L B1 Domain With A G15a Mutation
          Length = 72

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 368 EATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTI 415
           E T +A++ +  A T+  E++G   +  + A  Y D +KK +N +WT+
Sbjct: 11  EVTIKANLIFANASTQTAEFKGTFEKATSEAYAYADTLKK-DNGEWTV 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,103,068
Number of Sequences: 62578
Number of extensions: 325633
Number of successful extensions: 828
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 8
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)