Query 014093
Match_columns 431
No_of_seqs 46 out of 48
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 01:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14735 HAUS4: HAUS augmin-li 100.0 4.5E-75 9.7E-80 555.3 25.6 232 186-421 5-238 (238)
2 PRK04863 mukB cell division pr 93.0 19 0.00041 44.0 23.0 160 232-413 952-1118(1486)
3 PF12128 DUF3584: Protein of u 65.5 3E+02 0.0065 33.0 19.2 86 342-427 454-539 (1201)
4 COG3096 MukB Uncharacterized p 59.8 3.6E+02 0.0079 32.0 18.3 149 232-410 951-1112(1480)
5 PRK11546 zraP zinc resistance 58.4 45 0.00098 31.0 7.3 65 350-414 43-111 (143)
6 KOG0982 Centrosomal protein Nu 57.4 3E+02 0.0065 30.3 16.9 138 273-423 291-430 (502)
7 TIGR02169 SMC_prok_A chromosom 57.3 3.3E+02 0.0071 31.2 15.3 40 382-421 976-1015(1164)
8 PF15302 P33MONOX: P33 mono-ox 57.2 54 0.0012 33.6 8.2 90 58-170 92-182 (294)
9 PF15358 TSKS: Testis-specific 56.7 3.1E+02 0.0066 30.2 16.2 139 273-420 144-354 (558)
10 KOG1962 B-cell receptor-associ 53.0 45 0.00098 33.0 6.8 56 356-411 157-212 (216)
11 PF09177 Syntaxin-6_N: Syntaxi 52.1 36 0.00077 28.6 5.2 55 370-424 7-64 (97)
12 PF02403 Seryl_tRNA_N: Seryl-t 47.9 1.7E+02 0.0037 24.6 9.6 93 326-422 5-97 (108)
13 smart00503 SynN Syntaxin N-ter 47.3 1.4E+02 0.0031 24.7 8.1 31 380-410 84-114 (117)
14 PF14739 DUF4472: Domain of un 43.8 2.1E+02 0.0046 25.6 8.9 83 309-400 17-99 (108)
15 PRK11519 tyrosine kinase; Prov 41.5 1.3E+02 0.0028 33.8 8.9 73 355-429 261-339 (719)
16 KOG0978 E3 ubiquitin ligase in 40.8 6.3E+02 0.014 29.3 14.8 54 356-410 426-479 (698)
17 KOG4637 Adaptor for phosphoino 40.3 23 0.00049 38.0 2.7 38 386-423 147-184 (464)
18 PF04156 IncA: IncA protein; 38.1 1.3E+02 0.0029 27.5 7.2 70 353-422 94-174 (191)
19 PHA02562 46 endonuclease subun 37.7 5.2E+02 0.011 27.4 15.8 56 353-408 298-353 (562)
20 KOG4674 Uncharacterized conser 36.8 1E+03 0.023 30.6 19.1 186 228-422 875-1097(1822)
21 KOG0994 Extracellular matrix g 36.4 2.9E+02 0.0062 34.2 10.8 112 299-410 1163-1292(1758)
22 KOG0250 DNA repair protein RAD 36.1 8.8E+02 0.019 29.6 16.1 125 292-420 273-422 (1074)
23 TIGR02168 SMC_prok_B chromosom 36.1 7E+02 0.015 28.4 16.9 54 370-423 967-1024(1179)
24 TIGR01010 BexC_CtrB_KpsE polys 35.1 2.3E+02 0.005 28.7 8.9 72 357-430 166-243 (362)
25 PF10303 DUF2408: Protein of u 33.8 41 0.0009 30.5 3.1 29 389-417 102-134 (134)
26 PF07544 Med9: RNA polymerase 33.5 2.8E+02 0.0061 23.0 8.4 56 365-420 25-80 (83)
27 PRK09841 cryptic autophosphory 32.4 2.3E+02 0.005 31.9 9.1 74 354-429 260-339 (726)
28 COG5460 Uncharacterized conser 32.4 2.6E+02 0.0057 24.1 7.3 67 350-416 5-77 (82)
29 cd04765 HTH_MlrA-like_sg2 Heli 32.1 69 0.0015 27.2 4.0 57 351-411 39-95 (99)
30 PF13514 AAA_27: AAA domain 32.0 9.4E+02 0.02 28.6 20.8 186 232-421 760-976 (1111)
31 KOG0250 DNA repair protein RAD 31.9 1E+03 0.022 29.0 17.0 42 382-423 426-467 (1074)
32 PF12325 TMF_TATA_bd: TATA ele 31.2 4E+02 0.0086 24.0 8.8 88 333-423 19-106 (120)
33 KOG4673 Transcription factor T 31.1 1.6E+02 0.0035 34.2 7.5 68 355-422 874-941 (961)
34 KOG0979 Structural maintenance 30.6 1.1E+03 0.023 28.8 14.2 73 352-427 819-891 (1072)
35 PF03359 GKAP: Guanylate-kinas 30.1 6.7E+02 0.014 26.3 11.7 71 214-303 166-236 (357)
36 TIGR01843 type_I_hlyD type I s 29.4 5.9E+02 0.013 25.5 11.3 9 197-205 71-79 (423)
37 PF10835 DUF2573: Protein of u 28.2 54 0.0012 28.1 2.6 37 389-425 3-47 (82)
38 KOG4739 Uncharacterized protei 26.4 4.9E+02 0.011 26.2 9.2 28 35-62 87-114 (233)
39 COG1340 Uncharacterized archae 26.3 4.1E+02 0.0089 27.6 9.0 63 354-416 69-131 (294)
40 PF08990 Docking: Erythronolid 26.2 1.2E+02 0.0026 21.0 3.6 22 360-385 5-26 (27)
41 PF04048 Sec8_exocyst: Sec8 ex 26.0 4E+02 0.0086 24.0 8.0 89 317-423 3-96 (142)
42 PRK05658 RNA polymerase sigma 26.0 9.4E+02 0.02 26.7 14.6 10 123-132 116-125 (619)
43 PF03961 DUF342: Protein of un 24.8 3.5E+02 0.0076 28.6 8.4 68 358-425 331-408 (451)
44 KOG2911 Uncharacterized conser 24.5 9.7E+02 0.021 26.4 12.8 168 232-406 188-384 (439)
45 PF02183 HALZ: Homeobox associ 24.4 1E+02 0.0022 23.4 3.2 34 385-418 5-38 (45)
46 PF14523 Syntaxin_2: Syntaxin- 24.2 4E+02 0.0087 21.8 11.3 47 295-343 5-53 (102)
47 PF14523 Syntaxin_2: Syntaxin- 24.1 3.7E+02 0.0081 22.0 6.9 28 385-412 71-98 (102)
48 COG1196 Smc Chromosome segrega 23.3 1.3E+03 0.029 27.6 16.0 40 382-421 967-1006(1163)
49 TIGR01843 type_I_hlyD type I s 23.2 7.7E+02 0.017 24.7 14.6 8 320-327 198-205 (423)
50 TIGR00414 serS seryl-tRNA synt 22.2 4.4E+02 0.0095 28.0 8.6 70 353-422 29-99 (418)
51 KOG0040 Ca2+-binding actin-bun 21.6 9.3E+02 0.02 31.1 11.6 123 234-404 2028-2152(2399)
52 PF07303 Occludin_ELL: Occludi 21.5 4.3E+02 0.0094 23.0 7.0 45 375-419 53-100 (101)
53 cd09235 V_Alix Middle V-domain 21.2 9E+02 0.019 24.8 10.7 81 221-310 13-97 (339)
54 PF10234 Cluap1: Clusterin-ass 20.5 4.5E+02 0.0098 26.9 7.9 63 357-419 186-256 (267)
55 PF09403 FadA: Adhesion protei 20.3 3.2E+02 0.007 24.9 6.2 38 383-420 80-121 (126)
No 1
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=100.00 E-value=4.5e-75 Score=555.26 Aligned_cols=232 Identities=41% Similarity=0.622 Sum_probs=224.0
Q ss_pred CCCCCCCCCccccccChhhhhhhhhhcCCCcccHHHHHHHhHHHHHHHHHHHHHHHhhccCCC--CccccccccccCCch
Q 014093 186 AEAGVGGVPNRFLGITPAYLWQTQLQQTPLSMDTAEYQISVSREIEARLKAKCDKLADAFIDD--IDSASGNHMSTARLP 263 (431)
Q Consensus 186 ~~p~v~~~~~~~LGl~~~~L~q~~l~~~p~~~d~~~~q~~L~~EIE~rLkkKC~~Llsy~~pd--~DSe~L~~aK~~~Lp 263 (431)
+.||+||++++||||+|+|| ++.+|+.+|+.|||++|+||||+||++||++|+|||+|+ .+|+++++||+++||
T Consensus 5 ~~~~~~~~~~~llGl~~~~L----~~~~~~~~~~~~~q~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~ 80 (238)
T PF14735_consen 5 VDPGVGGDQPRLLGLTPADL----LQLMPDKKDVQRMQQRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLP 80 (238)
T ss_pred CCCCCCCCCCCccCCCHHHH----HhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHH
Confidence 78999999999999999999 566777789999999999999999999999999999984 447779999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHhHh
Q 014093 264 ERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLE 343 (431)
Q Consensus 264 e~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle 343 (431)
++|+..+.+.+++++.++|+++++++||++|++||++||++|++||++|||++|+++|+++++||++||++|++|||+++
T Consensus 81 ~~l~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~ 160 (238)
T PF14735_consen 81 ELLREEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLE 160 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 014093 344 HVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMD 421 (431)
Q Consensus 344 ~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~ 421 (431)
++||++|||||+|+||++||++|+++++++++++++++++|++||++|++|++||+||++|+++|+||||||+||+||
T Consensus 161 ~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k~Wal~e~~~~ 238 (238)
T PF14735_consen 161 LEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIENKRWALEEFSKS 238 (238)
T ss_pred HHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.97 E-value=19 Score=43.98 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhccC---C--CCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 232 ARLKAKCDKLADAFI---D--DIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQILGVLI 306 (431)
Q Consensus 232 ~rLkkKC~~Llsy~~---p--d~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq 306 (431)
+.++.++|.|....+ + =.|+.++. ++...|-+.|+..++.+++....+++++...++++..|.+++..+-.-++
T Consensus 952 ~~~~~~~~~l~~~~~~~~~~~y~~~~~~l-~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq 1030 (1486)
T PRK04863 952 RDAKQQAFALTEVVQRRAHFSYEDAAEML-AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD 1030 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHhHh-hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888877654 1 22333433 45558889998888899888999999999999999999999866655555
Q ss_pred HHHHhhccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014093 307 KLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLRE 386 (431)
Q Consensus 307 ~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~ 386 (431)
.+...+. +.+.+++.+-..| |.-|-.+.|.-.-+| ...+.+.+.=|++|+..+-..+.+++....+|
T Consensus 1031 ~~~e~L~-E~eqe~~~~g~~~----~~~~~~~~~~~~~~l------~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL-- 1097 (1486)
T PRK04863 1031 AKRQMLQ-ELKQELQDLGVPA----DSGAEERARARRDEL------HARLSANRSRRNQLEKQLTFCEAEMDNLTKKL-- 1097 (1486)
T ss_pred HHHHHHH-HHHHHHHHcCCCC----CccHHHHHHHhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333211 1222333333332 222222222221111 12344555566677666666666666655554
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhh--hhh
Q 014093 387 YQGVDPRFDNIARQYHDIVKKLEN--MQW 413 (431)
Q Consensus 387 Ye~LG~eFd~LvrEY~~L~q~Ien--krW 413 (431)
+...++|..++..|.+ .+|
T Consensus 1098 --------~~~~~e~~~~re~I~~aK~~W 1118 (1486)
T PRK04863 1098 --------RKLERDYHEMREQVVNAKAGW 1118 (1486)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999988 667
No 3
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.49 E-value=3e+02 Score=33.02 Aligned_cols=86 Identities=21% Similarity=0.216 Sum_probs=67.4
Q ss_pred HhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 014093 342 LEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMD 421 (431)
Q Consensus 342 le~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~ 421 (431)
+...+=.-+||+|-...+......++.+.++..+..+.....=..++.+-..|+..-.+...++++++.-+=.+.++..-
T Consensus 454 l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 454 LKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455577899999999999999998887776655554444445567777889999999999999999988889999888
Q ss_pred hcCCCC
Q 014093 422 LKRLPD 427 (431)
Q Consensus 422 ~~~~~~ 427 (431)
|.|.++
T Consensus 534 L~p~~g 539 (1201)
T PF12128_consen 534 LDPQKG 539 (1201)
T ss_pred hCCCCC
Confidence 877643
No 4
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.78 E-value=3.6e+02 Score=32.04 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhccC-----CCCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 014093 232 ARLKAKCDKLADAFI-----DDIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQI----- 301 (431)
Q Consensus 232 ~rLkkKC~~Llsy~~-----pd~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqC----- 301 (431)
.+++...|.|.+..+ .-+|+..+...++ .|.+.|+.+++..+..+...+|++.-.+.||..|.+||-..
T Consensus 951 ~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~s-dLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~ 1029 (1480)
T COG3096 951 RQARQQAFALTEVVQRRAHFSYSDSAEMLSENS-DLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD 1029 (1480)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566777788877655 2455555554444 89999998888888888889999999999999999998653
Q ss_pred --HHHHHHHHHhh-ccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 014093 302 --LGVLIKLVKDL-KLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYN 378 (431)
Q Consensus 302 --L~lLq~LI~kh-RLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~ 378 (431)
.++|+.|+++. -++.-.|-. .+ -.+++|--+++-.+. .-|.=|.+++..+-..+.++.
T Consensus 1030 ~K~~~l~El~qEl~d~GV~AD~g------Ae-----eRA~~RRDELh~~Ls--------t~RsRr~~~EkqlT~~E~E~~ 1090 (1480)
T COG3096 1030 TKKELLNELQQELQDIGVRADSG------AE-----ERARIRRDELHAQLS--------TNRSRRNQLEKQLTFCEAEMD 1090 (1480)
T ss_pred HHHHHHHHHHHHHHHhCCCcCcc------hH-----HHHHHHHHHHHHHHh--------ccHhHHHHHHHHHHHHHHHHH
Confidence 34555555442 122222211 11 134555444443222 235557777777777777777
Q ss_pred HHHHHhhhhhcCChhHHHHHHHHHHHHHHHhh
Q 014093 379 KAVTRLREYQGVDPRFDNIARQYHDIVKKLEN 410 (431)
Q Consensus 379 ~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ien 410 (431)
....+++ .+-|-|+.++.-..|
T Consensus 1091 ~L~~~~r----------K~ErDY~~~Re~VV~ 1112 (1480)
T COG3096 1091 NLTRKLR----------KLERDYFEMREQVVT 1112 (1480)
T ss_pred HHHHHHH----------HHHhhHHHHHHHHHH
Confidence 7666665 345677777777666
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.39 E-value=45 Score=31.03 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=53.3
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---cCChh-HHHHHHHHHHHHHHHhhhhhh
Q 014093 350 TYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQ---GVDPR-FDNIARQYHDIVKKLENMQWT 414 (431)
Q Consensus 350 TYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye---~LG~e-Fd~LvrEY~~L~q~IenkrWa 414 (431)
-.|||+..++.+|++.-..++...++++..-+..|++-- .-++. -.++++|=.+|++++.+.|=.
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999998887776542 23333 678899999999999887653
No 6
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.43 E-value=3e+02 Score=30.34 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCC
Q 014093 273 IEREEAALREDLYAADRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYT 352 (431)
Q Consensus 273 kqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYT 352 (431)
++|+++...|++++..+|+.+=...|.-|+.-|..++-+.-=+-|.=.|.+-.--+-.+|+ .|+|+.+..+|.- |-
T Consensus 291 ~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~e---q~l~~rm~d~Lrr-fq 366 (502)
T KOG0982|consen 291 KEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICE---QKLRVRMNDILRR-FQ 366 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HH
Confidence 3444667778999999999999999999999999998876666666666666666667775 6888888888776 33
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-hhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 353 QESIPALHKIRKYLVEATEEASVAYNKAV-TRLR-EYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 353 pEkV~ALrkIR~~Le~A~~e~eq~~~~s~-~~L~-~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
.++=+.... +++...++..++ .+|. +-.+.|.+=- =+-|-++-.+.+..++..|++-+++|.
T Consensus 367 ~ekeatqEL--------ieelrkelehlr~~kl~~a~p~rgrsSa-Re~eleqevkrLrq~nr~l~eqneeln 430 (502)
T KOG0982|consen 367 EEKEATQEL--------IEELRKELEHLRRRKLVLANPVRGRSSA-REIELEQEVKRLRQPNRILSEQNEELN 430 (502)
T ss_pred HhhHHHHHH--------HHHHHHHHHHHHHHHHHhhccccCchhH-HHHHHHHHHHHhccccchhhhhhhhhh
Confidence 333322222 222233333333 1111 1134454442 223455566677778889999888875
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=57.26 E-value=3.3e+02 Score=31.19 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 014093 382 TRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMD 421 (431)
Q Consensus 382 ~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~ 421 (431)
..+..|+.+-..|+.+..+|.++...++.-..+++++++.
T Consensus 976 ~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1015 (1164)
T TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888888888888877653
No 8
>PF15302 P33MONOX: P33 mono-oxygenase
Probab=57.24 E-value=54 Score=33.60 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCccCCccchHHHH
Q 014093 58 LEAMAIYCEAIAMVEGYQQAVSVANLGGIRDVQGLSSQLGLKSSPQVYETLEHRLVVAEAAQRLRLPLISKDGEILEDEI 137 (431)
Q Consensus 58 L~~~~i~~~~~emv~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~yetLe~~L~vaE~~q~L~~~~~s~dg~~~~~~~ 137 (431)
+-+-.|-..-||=|+.|.+..-.++. |.-|.=||....- +-+-|||+.++|+++ .||+..||-
T Consensus 92 iMnSLiTKQTqEsiq~FEqqAGL~da-------gYtPHkGLtaEEt------ky~rvaeal~KL~mq----sge~~kEer 154 (294)
T PF15302_consen 92 IMNSLITKQTQESIQRFEQQAGLRDA-------GYTPHKGLTAEET------KYHRVAEALHKLKMQ----SGEITKEER 154 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccc-------ccCCCCCcccccc------ccchhhhhhhhhccc----ccccchhhc
Confidence 45555667778888888776333222 3446667765433 236789999999985 589887775
Q ss_pred hhhhhcccCccCCCCcccccccCC-CCCcccCCC
Q 014093 138 EKWSTMSRSSLDSTSTSATISSSS-NSMNYTNTS 170 (431)
Q Consensus 138 e~~~~~~~~~~~~~~t~~~~~~~~-~~~~y~~~~ 170 (431)
.- +|--||+++...||.. -.-+||.+.
T Consensus 155 q~------sSaQSTPssTP~ssPkq~~RgWF~~g 182 (294)
T PF15302_consen 155 QP------SSAQSTPSSTPHSSPKQKRRGWFSSG 182 (294)
T ss_pred Cc------cccccCCCCCCCCCcccccCcccccC
Confidence 54 3344444443333322 234455543
No 9
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=56.74 E-value=3.1e+02 Score=30.24 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcc
Q 014093 273 IEREEAALREDLYAAD---RKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLG 349 (431)
Q Consensus 273 kqr~es~lrE~~~ll~---rQ~~~Y~qvLlqCL~lLq~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~d 349 (431)
.+-+++-+.|++-... .-...|-.-|..|+....+-|-| -+++++-|.....++--|||.+..++..+
T Consensus 144 LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVed---------aEiKtnvLkqnS~~LEekLr~lq~qLqdE 214 (558)
T PF15358_consen 144 LQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVED---------AEIKTNVLKQNSALLEEKLRYLQQQLQDE 214 (558)
T ss_pred HHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHH---------HHHHhcccccchHHHHHHHHHHHHHhccc
Confidence 3334555555544221 23445666666665555554443 35566667777777777888888888877
Q ss_pred cCCcc--ch-------------------------------------------------------------------HHHH
Q 014093 350 TYTQE--SI-------------------------------------------------------------------PALH 360 (431)
Q Consensus 350 TYTpE--kV-------------------------------------------------------------------~ALr 360 (431)
|-+.. .. +.|.
T Consensus 215 ~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~lqk~~s~LE 294 (558)
T PF15358_consen 215 TPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQELQKVSSGLE 294 (558)
T ss_pred CcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhhcccCccHH
Confidence 77611 00 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 014093 361 KIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEM 420 (431)
Q Consensus 361 kIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~ 420 (431)
.||..+..=...--++..+.+..|+=.-++|.-||.++.++-+-+.+-.+.--+|+|++-
T Consensus 295 elRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~ 354 (558)
T PF15358_consen 295 ELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRG 354 (558)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555544556666667889999999999999999998887776666666776653
No 10
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.01 E-value=45 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhh
Q 014093 356 IPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENM 411 (431)
Q Consensus 356 V~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ienk 411 (431)
.+=+.+.+++|+....+.+-+-++-.....-.+++-.|||.+.++|..|+..|+.+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 33455566666555555554444444556677999999999999999999999863
No 11
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=52.07 E-value=36 Score=28.63 Aligned_cols=55 Identities=11% Similarity=0.348 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChh---HHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 370 TEEASVAYNKAVTRLREYQGVDPR---FDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 370 ~~e~eq~~~~s~~~L~~Ye~LG~e---Fd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
..+....+++++..++.|..+... =..+..-..+|+..|..-.|.|++|++...-
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665443 2345556677888999999999999998754
No 12
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.92 E-value=1.7e+02 Score=24.64 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHH
Q 014093 326 TWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIV 405 (431)
Q Consensus 326 ~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~ 405 (431)
+|+...-+.+...++.=- ......+.|-.+..=|..+-.+++....+.+.........-.-|++++.+..+=..+.
T Consensus 5 k~ir~n~e~v~~~l~~R~----~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk 80 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRG----GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELK 80 (108)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcC----CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 344444555555554222 3445556777777778888899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHhhh
Q 014093 406 KKLENMQWTIHQVEMDL 422 (431)
Q Consensus 406 q~IenkrWaL~E~~~~~ 422 (431)
++|....=.+.+++..+
T Consensus 81 ~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 81 EEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988666666665544
No 13
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=47.29 E-value=1.4e+02 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.362 Sum_probs=25.9
Q ss_pred HHHHhhhhhcCChhHHHHHHHHHHHHHHHhh
Q 014093 380 AVTRLREYQGVDPRFDNIARQYHDIVKKLEN 410 (431)
Q Consensus 380 s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ien 410 (431)
.+.+-.-++.|..+|.++..+|..+++.+..
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888999999999999999988765
No 14
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=43.83 E-value=2.1e+02 Score=25.64 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=57.0
Q ss_pred HHhhccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014093 309 VKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQ 388 (431)
Q Consensus 309 I~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye 388 (431)
|..|||.-|++ ++=|+-|++-+.+.=||+++++-.+ ...+++...++++..+.......-..-..-..+|+
T Consensus 17 Ie~~rL~Eq~E-----aE~FELk~~vL~lE~rvleLel~~~----~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~ 87 (108)
T PF14739_consen 17 IETNRLREQHE-----AEKFELKNEVLRLENRVLELELHGD----KAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQ 87 (108)
T ss_pred HHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcc----hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666654 5668999999999999999999988 55677888888886555543333333334556677
Q ss_pred cCChhHHHHHHH
Q 014093 389 GVDPRFDNIARQ 400 (431)
Q Consensus 389 ~LG~eFd~LvrE 400 (431)
++..+|+.=+..
T Consensus 88 a~~k~~~~e~~k 99 (108)
T PF14739_consen 88 ALPKAFEAEVAK 99 (108)
T ss_pred HHHHhhccHHHH
Confidence 777777655443
No 15
>PRK11519 tyrosine kinase; Provisional
Probab=41.51 E-value=1.3e+02 Score=33.84 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------CChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCC
Q 014093 355 SIPALHKIRKYLVEATEEASVAYNKAVTRLREYQG------VDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRLPDH 428 (431)
Q Consensus 355 kV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~------LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~~~~ 428 (431)
+..+-++-.+.|++.+.+.++++..++.+|+.|+. ++.+-+.+.....++++.+.+-+..+.++..... ++|
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~--~~h 338 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYT--KEH 338 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccC
Q ss_pred C
Q 014093 429 P 429 (431)
Q Consensus 429 ~ 429 (431)
|
T Consensus 339 P 339 (719)
T PRK11519 339 P 339 (719)
T ss_pred c
No 16
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=6.3e+02 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhh
Q 014093 356 IPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLEN 410 (431)
Q Consensus 356 V~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ien 410 (431)
..+.++|++.. ...++.+.-......-|..-+.+|..|+....+-.+|.+....
T Consensus 426 d~~~r~~~~~~-~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~e 479 (698)
T KOG0978|consen 426 DDAERQIRQVE-ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELRE 479 (698)
T ss_pred HHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666676655 3444444444444466888889999999988888777766543
No 17
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=40.31 E-value=23 Score=37.99 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.8
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 386 EYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 386 ~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
.||.+-.+||.+.++|++..|+|+.|+=+++=|+...|
T Consensus 147 ~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tik 184 (464)
T KOG4637|consen 147 QLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIK 184 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35666778999999999999999999999999987765
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.11 E-value=1.3e+02 Score=27.51 Aligned_cols=70 Identities=10% Similarity=0.232 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhcCChhHHHHHHHHHHHH-------HHHhhhhhhHHHHHhh
Q 014093 353 QESIPALHKIRKYLVEATEEASVAYNKAV----TRLREYQGVDPRFDNIARQYHDIV-------KKLENMQWTIHQVEMD 421 (431)
Q Consensus 353 pEkV~ALrkIR~~Le~A~~e~eq~~~~s~----~~L~~Ye~LG~eFd~LvrEY~~L~-------q~IenkrWaL~E~~~~ 421 (431)
++.+..+...-..+.......+.+....+ ..-...+.+...|.++.++..+++ ..+++.+|.+.+...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 014093 422 L 422 (431)
Q Consensus 422 ~ 422 (431)
+
T Consensus 174 ~ 174 (191)
T PF04156_consen 174 L 174 (191)
T ss_pred H
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.68 E-value=5.2e+02 Score=27.38 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHH
Q 014093 353 QESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKL 408 (431)
Q Consensus 353 pEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~I 408 (431)
|..+..+...++.|+..++..+............|..+-..+.++=+++...+..|
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888777777777777666566555555555555544444444444
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.80 E-value=1e+03 Score=30.63 Aligned_cols=186 Identities=19% Similarity=0.179 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 228 REIEARLKAKCDKLADAFIDDIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQILGVLIK 307 (431)
Q Consensus 228 ~EIE~rLkkKC~~Llsy~~pd~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq~ 307 (431)
.+++.+|+.-=+....++.| . ...-+..++.-|+...+++..++..+..-.. -=+++-+-|....+.|..+..
T Consensus 875 ~eL~k~l~~~~~~~~~l~~~-~-----~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s-~i~~yqe~~~s~eqsl~~~ks 947 (1822)
T KOG4674|consen 875 SELEKRLKSAKTQLLNLDSK-S-----SNEDATILEDTLRKELEEITDLKEELTDALS-QIREYQEEYSSLEQSLESVKS 947 (1822)
T ss_pred HHHHHHHHHhHHHHhhcccc-c-----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666665533 1 1112225555576554555444443332111 112333334556666666666
Q ss_pred HHHhhccccccchhhh--HHHHHHHHHHHHHHHHHhHhHhhhcccCCc--cc--hHHHH---------------------
Q 014093 308 LVKDLKLQHQHKYDEL--QKTWLCKRCETMSAKLRVLEHVLLLGTYTQ--ES--IPALH--------------------- 360 (431)
Q Consensus 308 LI~khRLk~Q~d~D~i--~~~yLe~KCeaM~lKLRvle~~LL~dTYTp--Ek--V~ALr--------------------- 360 (431)
-+-++|+.+=.++-.. ...-|+. +.+.++-++..+.--+++=+. ++ ..+.+
T Consensus 948 ~lde~~~~~ea~ie~~~~k~tslE~--~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~ 1025 (1822)
T KOG4674|consen 948 ELDETRLELEAKIESLHKKITSLEE--ELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANE 1025 (1822)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666665554433322 2222222 223333333333322232222 22 11111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 014093 361 ----------KIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDL 422 (431)
Q Consensus 361 ----------kIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~ 422 (431)
+++..+..+....++++...-..-..|..++.+|..+..+|..|+..++...=.+.++..+.
T Consensus 1026 ~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w 1097 (1822)
T KOG4674|consen 1026 QIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDW 1097 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccch
Confidence 12222222233333444444444556778999999999999999999887666666655544
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.45 E-value=2.9e+02 Score=34.17 Aligned_cols=112 Identities=14% Similarity=0.254 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhccccccchhhhHHH-------HHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHH
Q 014093 299 EQILGVLIKLVKDLKLQHQHKYDELQKT-------WLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATE 371 (431)
Q Consensus 299 lqCL~lLq~LI~khRLk~Q~d~D~i~~~-------yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~ 371 (431)
.+|.+.-..+|++.-..++.=+++.+.= =+..+..-|--||.-+...|-.-.-+.+.|+-+-+....|...+.
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~ 1242 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQ 1242 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444443332 245677788888887776555555666777766655555544444
Q ss_pred HHHHHHHHHHHHhh-----------hhhcCChhHHHHHHHHHHHHHHHhh
Q 014093 372 EASVAYNKAVTRLR-----------EYQGVDPRFDNIARQYHDIVKKLEN 410 (431)
Q Consensus 372 e~eq~~~~s~~~L~-----------~Ye~LG~eFd~LvrEY~~L~q~Ien 410 (431)
...-.+...++.|. .-++|-.+|+.+-.-|.+|++..+.
T Consensus 1243 ~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ 1292 (1758)
T KOG0994|consen 1243 ALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEK 1292 (1758)
T ss_pred HHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433433334443 5566777777777777777776654
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=36.08 E-value=8.8e+02 Score=29.55 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchh--hhHHHHHHHHHHHHHHHHHhHhHhhhc--cc--CCcc-------chHH
Q 014093 292 AEYYNVLEQILGVLIKLVKDLKLQHQHKYD--ELQKTWLCKRCETMSAKLRVLEHVLLL--GT--YTQE-------SIPA 358 (431)
Q Consensus 292 ~~Y~qvLlqCL~lLq~LI~khRLk~Q~d~D--~i~~~yLe~KCeaM~lKLRvle~~LL~--dT--YTpE-------kV~A 358 (431)
|..-..-.+=+.-+...|++ .|.+.+ .-+.+|...+=+++..|+...+-++-. ++ .+.+ .+.+
T Consensus 273 W~~V~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~ 348 (1074)
T KOG0250|consen 273 WAWVNEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDD 348 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44434444444444555544 444444 446788888889999888877665532 11 1112 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 014093 359 LHKIRKYLVEATEEASVAYNKAVTRLREY------------QGVDPRFDNIARQYHDIVKKLENMQWTIHQVEM 420 (431)
Q Consensus 359 LrkIR~~Le~A~~e~eq~~~~s~~~L~~Y------------e~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~ 420 (431)
++..-..++..+.++++.+++...+...+ +.+|++-+.+..++-+|.+++++.+=-+..|..
T Consensus 349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666666555444443 456666677777777777777765444444433
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=36.05 E-value=7e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC----hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 370 TEEASVAYNKAVTRLREYQGVD----PRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 370 ~~e~eq~~~~s~~~L~~Ye~LG----~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
+.+.+..+...-..+.+|+.+- ..|+.+..+|.+|..+++.-.=++.++++..+
T Consensus 967 ~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~ 1024 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024 (1179)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556889999999 99999999999999998887777777666543
No 24
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.13 E-value=2.3e+02 Score=28.71 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------CChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCC
Q 014093 357 PALHKIRKYLVEATEEASVAYNKAVTRLREYQG------VDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRLPDHPS 430 (431)
Q Consensus 357 ~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~------LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~~~~~~ 430 (431)
.+.+.-++.++..+.+.++.+..++.+|..|+. ++..-........+|+..+...+=-|.++.. .-.++||.
T Consensus 166 ~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~--~~~~~~P~ 243 (362)
T TIGR01010 166 RARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS--ITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCCCCc
No 25
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=33.79 E-value=41 Score=30.52 Aligned_cols=29 Identities=41% Similarity=0.685 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHHHHHHHHHhh----hhhhHHH
Q 014093 389 GVDPRFDNIARQYHDIVKKLEN----MQWTIHQ 417 (431)
Q Consensus 389 ~LG~eFd~LvrEY~~L~q~Ien----krWaL~E 417 (431)
.+.+.|..|-.+--+|+..+|| .+|+|+|
T Consensus 102 ~~~~~l~~iY~~L~~ik~~LE~L~lT~rWtLRE 134 (134)
T PF10303_consen 102 EVDPSLQPIYDQLIDIKNTLENLLLTRRWTLRE 134 (134)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhccCcccC
Confidence 8999999999999999999999 8999986
No 26
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.45 E-value=2.8e+02 Score=23.04 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 014093 365 YLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEM 420 (431)
Q Consensus 365 ~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~ 420 (431)
-++.++-.-+.-+++++..+++..+++.--+.--++-..|++.|+.|+=.|..|..
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888899999999999999999999999999999999999988888764
No 27
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.43 E-value=2.3e+02 Score=31.92 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------CChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCC
Q 014093 354 ESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQG------VDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRLPD 427 (431)
Q Consensus 354 EkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~------LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~~~ 427 (431)
.+..+-.+-.+.|++.+.+.++++..++.+|+.|+. ++.+...+..+..+++..+..-+..+.++.... .++
T Consensus 260 ~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~--~~~ 337 (726)
T PRK09841 260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY--KKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc
Q ss_pred CC
Q 014093 428 HP 429 (431)
Q Consensus 428 ~~ 429 (431)
||
T Consensus 338 hP 339 (726)
T PRK09841 338 HP 339 (726)
T ss_pred Cc
No 28
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=2.6e+02 Score=24.07 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=36.9
Q ss_pred cCCccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHH-----HHHHHHHHHHHHhhhhhhHH
Q 014093 350 TYTQESIPA-LHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDN-----IARQYHDIVKKLENMQWTIH 416 (431)
Q Consensus 350 TYTpEkV~A-LrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~-----LvrEY~~L~q~IenkrWaL~ 416 (431)
||+.+.-++ -.+||+||..++...--....-...=---+-+|+.|=. -...|.+-...+..-=|+|+
T Consensus 5 tf~k~~~a~lv~~i~dYL~~E~~~evg~~~Ae~fleFis~elGpyfYNQGi~da~a~i~ekl~d~te~l~~LE 77 (82)
T COG5460 5 TFEKQEKAALVTRIRDYLTRETETEVGKFDAEFFLEFISGELGPYFYNQGIKDARAVIEEKLADMTEELFALE 77 (82)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 566644444 47999999777665443333322221223568888842 23344444455555566665
No 29
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=32.13 E-value=69 Score=27.25 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhh
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENM 411 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ienk 411 (431)
||++.|..++.|+.-| +..---+..+...|..+..-+..=+.+..+.++++.+|...
T Consensus 39 Yt~~di~~l~~I~~ll----r~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (99)
T cd04765 39 YRPKDVELLLLIKHLL----YEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDL 95 (99)
T ss_pred eCHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999998755 22334455556667766665566666777777777777653
No 30
>PF13514 AAA_27: AAA domain
Probab=31.97 E-value=9.4e+02 Score=28.62 Aligned_cols=186 Identities=16% Similarity=0.227 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhccCCCCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014093 232 ARLKAKCDKLADAFIDDIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQILGVLIKLVKD 311 (431)
Q Consensus 232 ~rLkkKC~~Llsy~~pd~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq~LI~k 311 (431)
..+..++..|+.-+.|+....... ..+..|-.+++.. .+.++....+.+++..++++...--..+..+-.-+..|...
T Consensus 760 ~~f~~~~~~L~~~l~~~~~~~~~~-~~~~~L~~~l~~a-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~ 837 (1111)
T PF13514_consen 760 AAFEEQVAALAERLGPDLPEDPAE-EALEALRARLEEA-REAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQ 837 (1111)
T ss_pred HHHHHHHHHHHHHcCcccccCcHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778887776533322111 3333455555432 12222233455556666666666666666666666666665
Q ss_pred hccccccchhhhHHHHHHHHHHHHHHHHHhHhHhh--hcccCCccch---------HH----HHHHH---HHHHHHHHHH
Q 014093 312 LKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVL--LLGTYTQESI---------PA----LHKIR---KYLVEATEEA 373 (431)
Q Consensus 312 hRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~L--L~dTYTpEkV---------~A----LrkIR---~~Le~A~~e~ 373 (431)
..+..-.++...-..+- +-.....++..++..| ..+.++.+.+ +. +..+. ..|+....+.
T Consensus 838 a~~~~~e~l~~~~~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l 915 (1111)
T PF13514_consen 838 AGVEDEEELREAEERAE--ERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEEL 915 (1111)
T ss_pred ccCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333222221 2233344444444444 2222222221 11 11222 2223333333
Q ss_pred HHHHHHHHHHhhhh-------------hcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 014093 374 SVAYNKAVTRLREY-------------QGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMD 421 (431)
Q Consensus 374 eq~~~~s~~~L~~Y-------------e~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~ 421 (431)
..........|... +.+-.++...+++|..++-...--+|++++++..
T Consensus 916 ~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 916 QEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443 4444455555666666666655666666666654
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.90 E-value=1e+03 Score=29.05 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 382 TRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 382 ~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
...+.+...|++-+.+-.+-.+|+..|+|++|.|+.+.+..+
T Consensus 426 ~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 426 EVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355677888999999999999999999999999999877543
No 32
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.20 E-value=4e+02 Score=24.04 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=54.8
Q ss_pred HHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhh
Q 014093 333 ETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQ 412 (431)
Q Consensus 333 eaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ienkr 412 (431)
+.|..-||-.+-++-. ..+.+..+...|+.+.+++-.........+........+=.+..++-..|..+-+-+=.|.
T Consensus 19 e~L~s~lr~~E~E~~~---l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 19 ERLQSQLRRLEGELAS---LQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 4455566655544432 2356777778888887777777666666665666666666666666666666655555555
Q ss_pred hhHHHHHhhhc
Q 014093 413 WTIHQVEMDLK 423 (431)
Q Consensus 413 WaL~E~~~~~~ 423 (431)
=-.+|+..|+.
T Consensus 96 E~veEL~~Dv~ 106 (120)
T PF12325_consen 96 EEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 33
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.12 E-value=1.6e+02 Score=34.21 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 014093 355 SIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDL 422 (431)
Q Consensus 355 kV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~ 422 (431)
.|.-|.+||+.|-+++-...++..+.+.+-..|.++-.++++|-+.|.-+-+---.|-=-++|++-||
T Consensus 874 e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl 941 (961)
T KOG4673|consen 874 ELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDL 941 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhH
Confidence 46778899999999999999999999999999999999999998888887776666666677777665
No 34
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.65 E-value=1.1e+03 Score=28.85 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=55.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCC
Q 014093 352 TQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRLPD 427 (431)
Q Consensus 352 TpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~~~ 427 (431)
|+|+-..+-++-..+=+-..+..++...-+++...+.++|++ +|++|....++|..-.=.++.+.+||.+.++
T Consensus 819 ~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~---~vq~y~~r~~el~~l~~~~~~~~~~le~i~~ 891 (1072)
T KOG0979|consen 819 KIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNED---AVQQYEVREDELRELETKLEKLSEDLERIKD 891 (1072)
T ss_pred chhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 444444555555555555666678888888888999999987 9999999999998877778888887766544
No 35
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=30.10 E-value=6.7e+02 Score=26.31 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCcccHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 214 PLSMDTAEYQISVSREIEARLKAKCDKLADAFIDDIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAE 293 (431)
Q Consensus 214 p~~~d~~~~q~~L~~EIE~rLkkKC~~Llsy~~pd~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~ 293 (431)
+...|..|++..|..|.+ ||...|...-.|- .+ ..|||-+. ....+..+.=..++.++|..
T Consensus 166 ~~~~dg~yF~~ll~~E~~-RL~~lC~~~e~~~-~~-----------~~lpee~~------~~ir~avGqa~LL~~qKf~Q 226 (357)
T PF03359_consen 166 ECERDGHYFRKLLQSETE-RLEGLCAEWEKEE-EE-----------NDLPEEAK------GLIRSAVGQARLLMSQKFKQ 226 (357)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHHHHHhc-cc-----------cCCChhHH------HHHHHHHhHHHHHHHHHHHH
Confidence 345788999999999995 9999999877751 11 24666552 22345555555668899999
Q ss_pred HHHHHHHHHH
Q 014093 294 YYNVLEQILG 303 (431)
Q Consensus 294 Y~qvLlqCL~ 303 (431)
|.....+|+.
T Consensus 227 F~~L~~~~~~ 236 (357)
T PF03359_consen 227 FEGLCQQNEN 236 (357)
T ss_pred HHHHHHHhcC
Confidence 9999999983
No 36
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.39 E-value=5.9e+02 Score=25.50 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=6.4
Q ss_pred ccccChhhh
Q 014093 197 FLGITPAYL 205 (431)
Q Consensus 197 ~LGl~~~~L 205 (431)
++-|+...+
T Consensus 71 L~~ld~~~~ 79 (423)
T TIGR01843 71 LVELDATDV 79 (423)
T ss_pred EEEEccchh
Confidence 777777765
No 37
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=28.21 E-value=54 Score=28.12 Aligned_cols=37 Identities=19% Similarity=0.557 Sum_probs=25.4
Q ss_pred cCChhHHHHHHHHHHHH------HHHhh-hhhhHH-HHHhhhcCC
Q 014093 389 GVDPRFDNIARQYHDIV------KKLEN-MQWTIH-QVEMDLKRL 425 (431)
Q Consensus 389 ~LG~eFd~LvrEY~~L~------q~Ien-krWaL~-E~~~~~~~~ 425 (431)
.+.+.||.|++-|+.|. +..|. |+|+|= -+.|+.-++
T Consensus 3 ~l~eq~dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL 47 (82)
T PF10835_consen 3 KLQEQFDGLVEKYTELLLGETSPEMKEKVKQWALYSHIAKSMPPL 47 (82)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhCcHH
Confidence 45689999999999985 33444 899984 344444443
No 38
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.35 E-value=4.9e+02 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 35 VSKSAHYDLQLAREEMSRERLRYLEAMA 62 (431)
Q Consensus 35 ls~~l~~eL~~A~eel~~~r~~~L~~~~ 62 (431)
..+.+...++..+.++.+++..|.+++.
T Consensus 87 ~qr~~~~~~~~~~~~~~req~~~~~~K~ 114 (233)
T KOG4739|consen 87 KQRNLQVKLELKQLEKDREQTAYFEKKT 114 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888999999998888654
No 39
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.35 E-value=4.1e+02 Score=27.61 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHH
Q 014093 354 ESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIH 416 (431)
Q Consensus 354 EkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~ 416 (431)
+.|.-++..|+.+...+.+..+.+.........|...|.+-+.|-++|.+|-..+.++.-+++
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e 131 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPE 131 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChH
Confidence 789999999999999999999999999999999999999999999999988777766555443
No 40
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=26.17 E-value=1.2e+02 Score=20.95 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014093 360 HKIRKYLVEATEEASVAYNKAVTRLR 385 (431)
Q Consensus 360 rkIR~~Le~A~~e~eq~~~~s~~~L~ 385 (431)
.|+|+||..+ ..++..++.+|+
T Consensus 5 ~kLr~YLkr~----t~eL~~~r~RLr 26 (27)
T PF08990_consen 5 DKLRDYLKRV----TAELRRARRRLR 26 (27)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHh
Confidence 3788998554 455666666665
No 41
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.03 E-value=4e+02 Score=23.98 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=54.7
Q ss_pred ccchhhhHHHHHHHH---HHHHHHHHHhHhHhhhcccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 014093 317 QHKYDELQKTWLCKR---CETMSAKLRVLEHVLLLGTYT--QESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVD 391 (431)
Q Consensus 317 Q~d~D~i~~~yLe~K---CeaM~lKLRvle~~LL~dTYT--pEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG 391 (431)
+..++.|..+|=... |..+ ...+.+|.+|=- .+..+-+++.++.++.+++....++..
T Consensus 3 ~~~l~~I~~~W~~~~~~~~~pv-----~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q------------ 65 (142)
T PF04048_consen 3 DEVLNEIKDEWPFMLTDDFNPV-----ELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQ------------ 65 (142)
T ss_pred HHHHHHHHHHHHHHhcCCCcHH-----HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 344556666653322 2222 234455555421 146677777778887777777766655
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 392 PRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 392 ~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
+|..-+..|+.+...|.+-+=.+.++...|.
T Consensus 66 -~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~ 96 (142)
T PF04048_consen 66 -GFNSSIGSYSQILSSISESQERIRELKESLQ 96 (142)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788777777777766776666553
No 42
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=25.96 E-value=9.4e+02 Score=26.72 Aligned_cols=10 Identities=40% Similarity=0.973 Sum_probs=6.3
Q ss_pred CCCccCCccc
Q 014093 123 LPLISKDGEI 132 (431)
Q Consensus 123 ~~~~s~dg~~ 132 (431)
.||+|-+|||
T Consensus 116 V~LLTREgEI 125 (619)
T PRK05658 116 VELLTREGEI 125 (619)
T ss_pred CcCCCcHHHH
Confidence 5666666664
No 43
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.76 E-value=3.5e+02 Score=28.63 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----------hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCC
Q 014093 358 ALHKIRKYLVEATEEASVAYNKAVTRLREYQGVD----------PRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRL 425 (431)
Q Consensus 358 ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG----------~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~ 425 (431)
.++.-.+.|...+++....+.+....|...+..+ ..+..+.+.|..+.+++...+.-+.++...+.+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445666666777777777777777776654 4677888888888888888888888888777665
No 44
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.49 E-value=9.7e+02 Score=26.37 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccCC--CCccccccccccCCchHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 232 ARLKAKCDKLADAFID--DIDSASGNHMSTARLPERVKMIIEEI-------EREEAALREDLYAADRKFAEYYNVLEQIL 302 (431)
Q Consensus 232 ~rLkkKC~~Llsy~~p--d~DSe~L~~aK~~~Lpe~Lk~~ieEk-------qr~es~lrE~~~ll~rQ~~~Y~qvLlqCL 302 (431)
...+.-|...++|+.. =.++-+.++.+..+.|......+.++ .+-.+++..++..|++.-..|...+.+|+
T Consensus 188 ~~t~~l~l~~l~~~k~i~vg~~~g~k~~~f~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~ 267 (439)
T KOG2911|consen 188 EETKDLVLCWLAYQKHIIVGESIGIKFLKFSQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQAL 267 (439)
T ss_pred HHHHHHHHHHHHhhhheeeehhcceEEEeeccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667776654 22355677788888887743333333 33356777777778888888888888887
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHH--------hHhHhhhcccCCccchHHHHHHH----------H
Q 014093 303 GVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLR--------VLEHVLLLGTYTQESIPALHKIR----------K 364 (431)
Q Consensus 303 ~lLq~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLR--------vle~~LL~dTYTpEkV~ALrkIR----------~ 364 (431)
.-..+=|-.--|+. .+ +..+- ..||.....+|- ..-.+++.++|.. -..|++.|- +
T Consensus 268 k~g~K~iA~~ylr~-rk---~~eK~-~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks-Gs~alK~il~~~~s~ekVed 341 (439)
T KOG2911|consen 268 KEGKKQIAITYLRA-RK---LLEKD-LERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS-GSEALKAILAQGGSTEKVED 341 (439)
T ss_pred HhcchHHHHHHHHH-HH---HHHhh-HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-hHHHHHHHHhccCChhhHHH
Confidence 66554332100000 00 00011 123333333333 2245667777764 345555553 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCChhHH--HHHHHHHHHHH
Q 014093 365 YLVEATEEASVAYNKAVTRLREYQGVDPRFD--NIARQYHDIVK 406 (431)
Q Consensus 365 ~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd--~LvrEY~~L~q 406 (431)
.| +.+++.-.........|.+|-.-+-+|+ +|-+|..+|..
T Consensus 342 ~L-dev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~ 384 (439)
T KOG2911|consen 342 VL-DEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEA 384 (439)
T ss_pred HH-HHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHh
Confidence 44 4455555555666678998887766665 45555444443
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.39 E-value=1e+02 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.561 Sum_probs=22.8
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 014093 385 REYQGVDPRFDNIARQYHDIVKKLENMQWTIHQV 418 (431)
Q Consensus 385 ~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~ 418 (431)
+.|+.|=..||+|..+|..|+++-+.=+=.+..+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777788888888888887766544333333
No 46
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.16 E-value=4e+02 Score=21.81 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchh--hhHHHHHHHHHHHHHHHHHhHh
Q 014093 295 YNVLEQILGVLIKLVKDLKLQHQHKYD--ELQKTWLCKRCETMSAKLRVLE 343 (431)
Q Consensus 295 ~qvLlqCL~lLq~LI~khRLk~Q~d~D--~i~~~yLe~KCeaM~lKLRvle 343 (431)
...+-+.+..|++++.. |++..|-. +-+..-+..+|..++-.+...-
T Consensus 5 l~~in~~v~~l~k~~~~--lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l 53 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQ--LGTPRDSQELREKIHQLIQKTNQLIKEISELL 53 (102)
T ss_dssp HHHHHHHHHHHHHHHHH--H-SSS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888886 66655544 4444556666666666655443
No 47
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.09 E-value=3.7e+02 Score=21.99 Aligned_cols=28 Identities=4% Similarity=0.241 Sum_probs=21.8
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHhhhh
Q 014093 385 REYQGVDPRFDNIARQYHDIVKKLENMQ 412 (431)
Q Consensus 385 ~~Ye~LG~eFd~LvrEY~~L~q~Ienkr 412 (431)
-..+.|-.+|.....+|..+++.+.++.
T Consensus 71 ~~~~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 71 LQREKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677889999999999998887753
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.30 E-value=1.3e+03 Score=27.59 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 014093 382 TRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMD 421 (431)
Q Consensus 382 ~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~ 421 (431)
.++..|+.+=..|+.|..+|.++.++.+.-+=++.++++.
T Consensus 967 ~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 967 RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888899999999999988888877777776653
No 49
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.24 E-value=7.7e+02 Score=24.72 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=2.9
Q ss_pred hhhhHHHH
Q 014093 320 YDELQKTW 327 (431)
Q Consensus 320 ~D~i~~~y 327 (431)
++....+|
T Consensus 198 ~~~~~~~~ 205 (423)
T TIGR01843 198 LLELERER 205 (423)
T ss_pred HHHHHHHH
Confidence 33333333
No 50
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.19 E-value=4.4e+02 Score=27.98 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChh-HHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 014093 353 QESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPR-FDNIARQYHDIVKKLENMQWTIHQVEMDL 422 (431)
Q Consensus 353 pEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~e-Fd~LvrEY~~L~q~IenkrWaL~E~~~~~ 422 (431)
-+.|-.+.+-|..+..+++..+.+.|.....+..-..-|.+ .+++..+-..|+++|....=.+.+++.++
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888777765555666 88999999999999988666666655543
No 51
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=21.61 E-value=9.3e+02 Score=31.12 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=86.8
Q ss_pred HHHHHHHHhhccCCCCc-ccc-ccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014093 234 LKAKCDKLADAFIDDID-SAS-GNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYNVLEQILGVLIKLVKD 311 (431)
Q Consensus 234 LkkKC~~Llsy~~pd~D-Se~-L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~qvLlqCL~lLq~LI~k 311 (431)
..+||+.+-++|....| +.. +...+ .+|+...+..+..-..++.+. +...+||..|..-|..
T Consensus 2028 faKkaSafNwwfenaEE~l~~~~~~ns-----------~~Ei~~l~~~h~~f~~sls~a-----~~df~~l~~ld~~iks 2091 (2399)
T KOG0040|consen 2028 FAKKASAFNSWFENAEEDLTDPVRCNS-----------LEEIRALRDAHEDFQASLSSA-----QADFKQLAELDQQIKS 2091 (2399)
T ss_pred HHHHHHhhhHHHHhhHhcccccccccc-----------hHHHHHHHHHHHHHHHHHhhc-----hhhHHHHHHHHHHHHh
Confidence 35899999999985333 222 22111 244444444454443333332 3456777777776665
Q ss_pred hccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 014093 312 LKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVD 391 (431)
Q Consensus 312 hRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG 391 (431)
++. -+.+||-.++.||..=..+|..-+.+.++++.+-..|=..-..+-
T Consensus 2092 ~~v--------------------------------~~~pytw~t~e~Le~tw~~L~~iI~eR~~el~~E~~Rq~~N~klc 2139 (2399)
T KOG0040|consen 2092 FNV--------------------------------GSNPYTWFTMEALEETWRNLQQIISERERELDKEISRQEENDKLC 2139 (2399)
T ss_pred cCC--------------------------------CCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 433 457899999999999999999999999999998888888888899
Q ss_pred hhHHHHHHHHHHH
Q 014093 392 PRFDNIARQYHDI 404 (431)
Q Consensus 392 ~eFd~LvrEY~~L 404 (431)
.+|...+..||..
T Consensus 2140 ~efa~~a~tfh~w 2152 (2399)
T KOG0040|consen 2140 EEFACTANTFHQW 2152 (2399)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 52
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=21.55 E-value=4.3e+02 Score=22.96 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhcC---ChhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 014093 375 VAYNKAVTRLREYQGV---DPRFDNIARQYHDIVKKLENMQWTIHQVE 419 (431)
Q Consensus 375 q~~~~s~~~L~~Ye~L---G~eFd~LvrEY~~L~q~IenkrWaL~E~~ 419 (431)
.++..+...+.+|+.+ +|+|..--+...-|..++.-.+=.|.++.
T Consensus 53 ~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I~~yD 100 (101)
T PF07303_consen 53 QEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLIQDYD 100 (101)
T ss_dssp HHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4444444566666666 78888887777777777776665565554
No 53
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=21.20 E-value=9e+02 Score=24.77 Aligned_cols=81 Identities=7% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHHhHHHHHHHHHH---HHHHHhhccC-CCCccccccccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 221 EYQISVSREIEARLKA---KCDKLADAFI-DDIDSASGNHMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYYN 296 (431)
Q Consensus 221 ~~q~~L~~EIE~rLkk---KC~~Llsy~~-pd~DSe~L~~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~q 296 (431)
..|..|.+....+|.. .+...|++++ |.+ -+.+.. ..||.-|..+.+++...-+ ...+++.+..-..
T Consensus 13 e~k~~lv~~~~~~l~~~~~~l~~~L~slnLP~s-l~~l~~---~~lP~sl~~~~~~i~~~gg-----~~~l~~~l~~L~~ 83 (339)
T cd09235 13 QRKAELVNREIGKLREATQLLNGVLASLNLPAA-IEDVSG---DTVPQSLLEKSRTVIEKGG-----IQTIDQLIKELPE 83 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHhcC---CCCCHHHHHHHHHHHhCCC-----hHHHHHHHHHHHH
Confidence 4667777766666664 4566677776 632 111111 1489998666566544311 2234444444444
Q ss_pred HHHHHHHHHHHHHH
Q 014093 297 VLEQILGVLIKLVK 310 (431)
Q Consensus 297 vLlqCL~lLq~LI~ 310 (431)
...+|..+|.....
T Consensus 84 l~~~~~~~L~e~~~ 97 (339)
T cd09235 84 LLQRNREILDEALR 97 (339)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666555443
No 54
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.51 E-value=4.5e+02 Score=26.86 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHH--------HHHHHHHHHHHHhhhhhhHHHHH
Q 014093 357 PALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDN--------IARQYHDIVKKLENMQWTIHQVE 419 (431)
Q Consensus 357 ~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~--------LvrEY~~L~q~IenkrWaL~E~~ 419 (431)
..+..=-..|++.++...+++.+++.||.+-+++-|-|.+ |-+.|..-..+.-|-.|-=+|++
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333445678999999999999999999999999998863 45555555666666666555544
No 55
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.25 E-value=3.2e+02 Score=24.90 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=28.6
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHhh----hhhhHHHHHh
Q 014093 383 RLREYQGVDPRFDNIARQYHDIVKKLEN----MQWTIHQVEM 420 (431)
Q Consensus 383 ~L~~Ye~LG~eFd~LvrEY~~L~q~Ien----krWaL~E~~~ 420 (431)
..+.++....+|..|+.+|.++...|+. +.=-|.+|++
T Consensus 80 ~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 80 QDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888889999999999988877654 4555555554
Done!