Query 014093
Match_columns 431
No_of_seqs 46 out of 48
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akv_A Sorting nexin-33; trans 58.9 1.5E+02 0.005 29.5 13.7 91 294-389 294-385 (386)
2 4ioe_A Secreted protein ESXB; 53.1 44 0.0015 25.5 6.9 73 351-424 9-81 (93)
3 2pv1_A Chaperone SURA; surviVa 51.7 17 0.00058 29.0 4.4 29 372-404 23-51 (103)
4 3gwk_C SAG1039, putative uncha 48.8 72 0.0025 24.6 7.6 73 351-424 8-80 (98)
5 2lw1_A ABC transporter ATP-bin 46.8 67 0.0023 25.6 7.2 53 362-414 23-80 (89)
6 4dnd_A Syntaxin-10, SYN10; str 45.8 42 0.0015 29.1 6.3 55 369-423 32-91 (130)
7 3l4q_C Phosphatidylinositol 3- 44.2 13 0.00045 34.0 2.9 38 386-423 25-62 (170)
8 3oja_B Anopheles plasmodium-re 42.8 2.1E+02 0.0072 28.7 11.8 30 398-427 557-586 (597)
9 3gpk_A PPIC-type peptidyl-prol 40.1 22 0.00074 29.6 3.4 13 391-403 39-51 (112)
10 3lay_A Zinc resistance-associa 39.1 92 0.0031 28.3 7.7 64 350-413 67-134 (175)
11 1xaw_A Occludin; coiled-coil, 37.2 66 0.0023 28.6 6.2 41 366-406 64-104 (140)
12 4g2p_A Chaperone SURA; structu 35.2 33 0.0011 28.1 3.8 26 374-403 28-54 (110)
13 3dyt_A Sorting nexin-9; 3-heli 34.8 3.3E+02 0.011 26.5 11.9 61 324-389 304-365 (366)
14 1gs9_A Apolipoprotein E, APOE4 34.7 2.5E+02 0.0084 25.0 12.5 75 351-425 82-162 (165)
15 3ljm_A Coil Ser L9C; de novo d 34.5 34 0.0011 23.2 2.9 20 327-346 5-24 (31)
16 1i84_S Smooth muscle myosin he 33.7 3.8E+02 0.013 30.4 13.0 70 355-424 872-945 (1184)
17 3f1i_S STAM-1, signal transduc 31.4 92 0.0032 25.3 5.6 63 233-295 5-72 (77)
18 3haj_A Human pacsin2 F-BAR; pa 28.9 4.6E+02 0.016 26.4 14.6 53 358-410 186-238 (486)
19 3zbh_A ESXA; unknown function, 28.3 1.9E+02 0.0066 21.8 8.6 73 351-424 9-81 (99)
20 2avr_X Adhesion A; antiparalle 27.9 1.7E+02 0.0057 25.5 7.0 38 383-420 62-103 (119)
21 2jzv_A Foldase protein PRSA; p 26.7 61 0.0021 26.1 4.0 15 391-405 46-61 (111)
22 3ui4_A Peptidyl-prolyl CIS-tra 26.6 47 0.0016 26.8 3.2 13 391-403 31-43 (101)
23 3etw_A Adhesin A; antiparallel 26.4 92 0.0032 27.0 5.2 37 384-420 63-103 (119)
24 2lo3_A SAGA-associated factor 26.3 13 0.00046 27.3 -0.1 16 13-28 26-41 (44)
25 3i6c_A Peptidyl-prolyl CIS-tra 25.0 64 0.0022 27.2 3.9 28 372-403 44-72 (123)
26 2epl_X N-acetyl-beta-D-glucosa 23.8 6.8E+02 0.023 26.6 13.6 92 322-419 486-581 (627)
27 1oxz_A ADP-ribosylation factor 23.7 4.2E+02 0.015 24.2 9.4 57 290-350 73-130 (186)
28 4fla_A Regulation of nuclear P 22.7 2.5E+02 0.0086 24.8 7.4 61 364-427 89-149 (152)
29 1zk6_A Foldase protein PRSA; a 22.5 68 0.0023 24.9 3.3 13 391-403 28-40 (93)
30 4hpq_C ATG17, KLTH0D15642P; au 21.9 5.6E+02 0.019 26.2 10.7 69 354-423 298-367 (413)
31 2kgj_A Peptidyl-prolyl CIS-tra 21.4 59 0.002 26.2 2.8 15 391-405 29-43 (102)
32 2vs0_A Virulence factor ESXA; 21.3 2.6E+02 0.009 20.9 8.3 73 351-424 6-78 (97)
33 1jns_A Peptidyl-prolyl CIS-tra 20.8 82 0.0028 24.5 3.5 13 391-403 27-39 (92)
34 3tc5_A Peptidyl-prolyl CIS-tra 20.2 85 0.0029 27.7 3.9 28 372-403 87-115 (166)
No 1
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=58.89 E-value=1.5e+02 Score=29.47 Aligned_cols=91 Identities=12% Similarity=0.213 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHH-HHHHHHHHHH
Q 014093 294 YYNVLEQILGVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKI-RKYLVEATEE 372 (431)
Q Consensus 294 Y~qvLlqCL~lLq~LI~khRLk~Q~d~D~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkI-R~~Le~A~~e 372 (431)
+..+|.+-...|++.-.--|+....+.|....+-++.+|+.|..-++.+... |-.+++..++++ +++++..++-
T Consensus 294 ~Kdll~~R~~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El~r-----F~~~Rv~Dfk~~l~eyle~qi~~ 368 (386)
T 4akv_A 294 FPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNH-----FHQRRELDFKHMMQNYLRQQILF 368 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333222222223333344455788888888888876544 455677777776 8888888888
Q ss_pred HHHHHHHHHHHhhhhhc
Q 014093 373 ASVAYNKAVTRLREYQG 389 (431)
Q Consensus 373 ~eq~~~~s~~~L~~Ye~ 389 (431)
+++....-+..|..|..
T Consensus 369 ~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 369 YQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp HHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 88888887778777754
No 2
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=53.05 E-value=44 Score=25.45 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=46.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
+|||.+...-.=-..-...++..-..+......|... =-|..++.....|.+.+....+..=.|+++...|++
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ-WAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKR 81 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443333333334444444444444455432 349999999999999998888887788888887754
No 3
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=51.74 E-value=17 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHH
Q 014093 372 EASVAYNKAVTRLREYQGVDPRFDNIARQYHDI 404 (431)
Q Consensus 372 e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L 404 (431)
+++...+.+..+|+. |.+|.++|++|..-
T Consensus 23 ~a~~~a~~i~~~l~~----g~~F~~lA~~~S~~ 51 (103)
T 2pv1_A 23 EAESQARAIVDQARN----GADFGKLAIAHSAD 51 (103)
T ss_dssp HHHHHHHHHHHHHHT----TCCHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHC----CCCHHHHHHHhCCC
Confidence 334444444455553 88999999999753
No 4
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.77 E-value=72 Score=24.60 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
+|||.+...-.--..-...++..-..+......|..+ =-|+.++.....|.+......+..=.|.++...|++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~-W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDEN-WDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-BCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665554443444444444445555555555553 359999999999999999999888888888887753
No 5
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.76 E-value=67 Score=25.62 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhcCChhHHHHHHHHHHHHHHHhh--hhhh
Q 014093 362 IRKYLVEATEEASVAYNKAVTRLRE---YQGVDPRFDNIARQYHDIVKKLEN--MQWT 414 (431)
Q Consensus 362 IR~~Le~A~~e~eq~~~~s~~~L~~---Ye~LG~eFd~LvrEY~~L~q~Ien--krWa 414 (431)
=-+.|+..+...+.........|.. |..=+..+..+..++..+.++++. .||.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999989876 655556788889999999999998 8994
No 6
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=45.83 E-value=42 Score=29.05 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC---hhH--HHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 369 ATEEASVAYNKAVTRLREYQGVD---PRF--DNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 369 A~~e~eq~~~~s~~~L~~Ye~LG---~eF--d~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
..++....+++++..++.|..+. ..+ +++.....+|+..|..-.|.|++|++...
T Consensus 32 Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777776442 211 24555667788899999999999998765
No 7
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=44.16 E-value=13 Score=34.04 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=32.2
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 386 EYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 386 ~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
.|...-.+||.|-.+|++..++|..||=|++-|+...+
T Consensus 25 qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik 62 (170)
T 3l4q_C 25 QYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555668899999999999999999999999987654
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.81 E-value=2.1e+02 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcCCCC
Q 014093 398 ARQYHDIVKKLENMQWTIHQVEMDLKRLPD 427 (431)
Q Consensus 398 vrEY~~L~q~IenkrWaL~E~~~~~~~~~~ 427 (431)
-+...++++++.+.+=-|+++.+.+.+-||
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334445555555666666677766665443
No 9
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=40.10 E-value=22 Score=29.64 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHH
Q 014093 391 DPRFDNIARQYHD 403 (431)
Q Consensus 391 G~eFd~LvrEY~~ 403 (431)
|.+|.++|++|.+
T Consensus 39 G~~F~~lA~~~S~ 51 (112)
T 3gpk_A 39 GGSFVAYARQYSE 51 (112)
T ss_dssp TCCHHHHHHHHCC
T ss_pred CCCHHHHHHHhCC
Confidence 8999999999975
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.06 E-value=92 Score=28.30 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=49.2
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---cCC-hhHHHHHHHHHHHHHHHhhhhh
Q 014093 350 TYTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQ---GVD-PRFDNIARQYHDIVKKLENMQW 413 (431)
Q Consensus 350 TYTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye---~LG-~eFd~LvrEY~~L~q~IenkrW 413 (431)
-.|||.-..+++||+.--.++....+++...+..|+.-- ..+ ...+++++|-.++++++...+=
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999888888888888887777776532 233 2566889999999999888664
No 11
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=37.23 E-value=66 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHH
Q 014093 366 LVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVK 406 (431)
Q Consensus 366 Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q 406 (431)
|.+.+....+........|....--.++|..|++||.++++
T Consensus 64 Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 64 LQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 33444444444444455555555566677777777777654
No 12
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=35.17 E-value=33 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhcCCh-hHHHHHHHHHH
Q 014093 374 SVAYNKAVTRLREYQGVDP-RFDNIARQYHD 403 (431)
Q Consensus 374 eq~~~~s~~~L~~Ye~LG~-eFd~LvrEY~~ 403 (431)
.+..+.+..+|.. |+ +|.++|++|.+
T Consensus 28 ~~~a~~i~~~l~~----G~~~F~~lA~~~S~ 54 (110)
T 4g2p_A 28 RLKLEEIAADIKS----GKTTFAAAAKEYSQ 54 (110)
T ss_dssp HHHHHHHHHHHHT----TSSCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHc----CcccHHHHHHHhCC
Confidence 3333444445543 88 99999999975
No 13
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=34.78 E-value=3.3e+02 Score=26.51 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014093 324 QKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKI-RKYLVEATEEASVAYNKAVTRLREYQG 389 (431)
Q Consensus 324 ~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkI-R~~Le~A~~e~eq~~~~s~~~L~~Ye~ 389 (431)
..+=.+.+|+.|...++.+... |-.+++..++++ .++++..++-+++..+.-+..|..|+.
T Consensus 304 ~~~~~~~r~e~is~~~~~El~r-----F~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~ 365 (366)
T 3dyt_A 304 DKQNMVKRVSIMSYALQAEMNH-----FHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 365 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444567788887777766544 445667676665 788888888887777777777777654
No 14
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=34.71 E-value=2.5e+02 Score=25.00 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CChhHHHHHHHHHHHHHHHhh-hhhhHHHHHhhhcC
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQG-----VDPRFDNIARQYHDIVKKLEN-MQWTIHQVEMDLKR 424 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~-----LG~eFd~LvrEY~~L~q~Ien-krWaL~E~~~~~~~ 424 (431)
-+|=+-+...++.+.+++--.+...++...+.+|..|.. +|++++++-+.-.-..+++.. -+.-++||...|.+
T Consensus 82 L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~p 161 (165)
T 1gs9_A 82 LTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 161 (165)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 344334444455555555555556666666777777655 898888887776666666644 56677777777765
Q ss_pred C
Q 014093 425 L 425 (431)
Q Consensus 425 ~ 425 (431)
+
T Consensus 162 ~ 162 (165)
T 1gs9_A 162 Y 162 (165)
T ss_dssp S
T ss_pred h
Confidence 4
No 15
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.47 E-value=34 Score=23.17 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhHhHhh
Q 014093 327 WLCKRCETMSAKLRVLEHVL 346 (431)
Q Consensus 327 yLe~KCeaM~lKLRvle~~L 346 (431)
-|++||.++--||..++.++
T Consensus 5 alekkcaalesklqalekkl 24 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48899999999998887654
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.66 E-value=3.8e+02 Score=30.36 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 355 SIPALHKIRKYLVEATEEASVAYNKAVTRLRE----YQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 355 kV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~----Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
.+..+..++..++......+.+.+.++..|.. ...+-.+...+..++.++.++++.-++.+++.+..+..
T Consensus 872 ~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~e 945 (1184)
T 1i84_S 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ 945 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544432 22233466777778888888888888877777665543
No 17
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=31.43 E-value=92 Score=25.27 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccCC---CCcccccc--ccccCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014093 233 RLKAKCDKLADAFID---DIDSASGN--HMSTARLPERVKMIIEEIEREEAALREDLYAADRKFAEYY 295 (431)
Q Consensus 233 rLkkKC~~Llsy~~p---d~DSe~L~--~aK~~~Lpe~Lk~~ieEkqr~es~lrE~~~ll~rQ~~~Y~ 295 (431)
.--+.|..++..-+| .+|+..+. .+-..+...++..++++++|.-+.+-|.-+.+-..+.-|+
T Consensus 5 ~kmd~~L~~l~~aDP~~~~~D~~el~~LE~~c~~MgplId~kLE~iDrkh~~Lteln~~~leaL~lY~ 72 (77)
T 3f1i_S 5 DKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYT 72 (77)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999998887 34444443 2233355666666667776665555544444333444443
No 18
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.91 E-value=4.6e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhh
Q 014093 358 ALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLEN 410 (431)
Q Consensus 358 ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~Ien 410 (431)
-+.|++..++.+..++....+.=+..|..|+..=.+|+.-.....+--|.++.
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEe 238 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 238 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567766666665554444444444445555557787766666665555554
No 19
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=28.31 E-value=1.9e+02 Score=21.80 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=48.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
+||+.+...-.=-......++..-..+......|.. .=-|..++.....|.+......+..=+|.++...|..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~-~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG-IWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555554443333334444444555555555655 3458889999999999988888888888888877653
No 20
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.88 E-value=1.7e+02 Score=25.52 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHhh----hhhhHHHHHh
Q 014093 383 RLREYQGVDPRFDNIARQYHDIVKKLEN----MQWTIHQVEM 420 (431)
Q Consensus 383 ~L~~Ye~LG~eFd~LvrEY~~L~q~Ien----krWaL~E~~~ 420 (431)
....|+..+.+|..|+.+|..+...|+. .+=.|..|++
T Consensus 62 ~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 62 AEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999988877654 5555666654
No 21
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=26.73 E-value=61 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.5
Q ss_pred C-hhHHHHHHHHHHHH
Q 014093 391 D-PRFDNIARQYHDIV 405 (431)
Q Consensus 391 G-~eFd~LvrEY~~L~ 405 (431)
| .+|+++|++|..-.
T Consensus 46 g~~~F~~lA~~~S~d~ 61 (111)
T 2jzv_A 46 DPSKFGEIAKKESMDT 61 (111)
T ss_dssp CTTSHHHHHHHHCSCH
T ss_pred CcccHHHHHHHHCCCc
Confidence 6 89999999997543
No 22
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=26.57 E-value=47 Score=26.77 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=12.1
Q ss_pred ChhHHHHHHHHHH
Q 014093 391 DPRFDNIARQYHD 403 (431)
Q Consensus 391 G~eFd~LvrEY~~ 403 (431)
|.+|.++|++|.+
T Consensus 31 G~~F~~lA~~~S~ 43 (101)
T 3ui4_A 31 GMRFNEVAAQYSE 43 (101)
T ss_dssp TCCHHHHHHHHCS
T ss_pred CCCHHHHHHHhCc
Confidence 8999999999976
No 23
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.38 E-value=92 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.0
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHhh----hhhhHHHHHh
Q 014093 384 LREYQGVDPRFDNIARQYHDIVKKLEN----MQWTIHQVEM 420 (431)
Q Consensus 384 L~~Ye~LG~eFd~LvrEY~~L~q~Ien----krWaL~E~~~ 420 (431)
.+.+...+..|..+|.+|..++.+|+. .+=.+.-|++
T Consensus 63 ~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 63 EANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788899999999999998887765 3334444443
No 24
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.27 E-value=13 Score=27.34 Aligned_cols=16 Identities=38% Similarity=0.883 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHhccc
Q 014093 13 PADVSQVIDLLERHCL 28 (431)
Q Consensus 13 ~~~~~~~~~~~~~h~~ 28 (431)
|--++.+||-||+||.
T Consensus 26 Pi~lsAIvdHLenhC~ 41 (44)
T 2lo3_A 26 PLALTAIVDHLENHCA 41 (44)
T ss_dssp EEETTTHHHHHHHCCT
T ss_pred cchHHHHHHHHHHHhc
Confidence 4567899999999995
No 25
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=24.96 E-value=64 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhhcCC-hhHHHHHHHHHH
Q 014093 372 EASVAYNKAVTRLREYQGVD-PRFDNIARQYHD 403 (431)
Q Consensus 372 e~eq~~~~s~~~L~~Ye~LG-~eFd~LvrEY~~ 403 (431)
++++-+.....+|+. | .+|..+|++|.+
T Consensus 44 ~A~~~~~~i~~~l~~----G~~~F~~lA~~~S~ 72 (123)
T 3i6c_A 44 EALELINGYIQKIKS----GEEDFESLASQFSD 72 (123)
T ss_dssp HHHHHHHHHHHHHHH----TSSCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHc----CcccHHHHHHHhCC
Confidence 344444444445544 6 699999999985
No 26
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=23.84 E-value=6.8e+02 Score=26.62 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHhhhcccCCccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHH
Q 014093 322 ELQKTWLCKRCETMSAKLRVLEHVLLLGTYTQESIPALHKIRK----YLVEATEEASVAYNKAVTRLREYQGVDPRFDNI 397 (431)
Q Consensus 322 ~i~~~yLe~KCeaM~lKLRvle~~LL~dTYTpEkV~ALrkIR~----~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~L 397 (431)
+...+..+..|+.+..|-+.. .-|..-|......+++.|-. .|..++++....+.+ .=|.. .-.-+|+.+
T Consensus 486 ~~~~~~~~~~~~~l~~k~~l~--~~l~~~y~~~d~~~l~~l~~~~~~~l~~~~~~l~~~~~~--~Wl~~--~kp~Gle~~ 559 (627)
T 2epl_X 486 AYIFETQAQLNALLALKISIT--SGIQKAYRNGDKEHLSALAEKDFPQLYQMVEDFSDQFSR--QWQQE--NKIFGLDTI 559 (627)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HHHHH--BCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh--hCcCchHHH
Confidence 344445555666655554433 23444566666677777633 232333333333332 23333 345679999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHH
Q 014093 398 ARQYHDIVKKLENMQWTIHQVE 419 (431)
Q Consensus 398 vrEY~~L~q~IenkrWaL~E~~ 419 (431)
.-.|.-+..+++..+|.|.++-
T Consensus 560 ~~R~~g~~~R~~~~~~r~~~~~ 581 (627)
T 2epl_X 560 DIRFGGLLKRIKRAQERLEQFI 581 (627)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 27
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.65 E-value=4.2e+02 Score=24.19 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccch-hhhHHHHHHHHHHHHHHHHHhHhHhhhccc
Q 014093 290 KFAEYYNVLEQILGVLIKLVKDLKLQHQHKY-DELQKTWLCKRCETMSAKLRVLEHVLLLGT 350 (431)
Q Consensus 290 Q~~~Y~qvLlqCL~lLq~LI~khRLk~Q~d~-D~i~~~yLe~KCeaM~lKLRvle~~LL~dT 350 (431)
|...-..++.+-+.+|..++..|.-+-.... |.=..+-|...|+.|.-||- +++.+|
T Consensus 73 k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~----~Li~e~ 130 (186)
T 1oxz_A 73 KRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLF----RLASDT 130 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHH----HHHHHc
Confidence 3333455677799999999999887665544 55677889999999988774 455555
No 28
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.74 E-value=2.5e+02 Score=24.85 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCC
Q 014093 364 KYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKRLPD 427 (431)
Q Consensus 364 ~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~~~~ 427 (431)
..|+++++.+.+-....+.....|+..-.+=+..+++|.+...++.+.+ .|++.-+.++||
T Consensus 89 ~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vk---keL~~hi~sLPD 149 (152)
T 4fla_A 89 GRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVR---KELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcCCc
Confidence 3455555555555555555555555555555666666666666666644 344445555555
No 29
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=22.49 E-value=68 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHH
Q 014093 391 DPRFDNIARQYHD 403 (431)
Q Consensus 391 G~eFd~LvrEY~~ 403 (431)
|.+|+++|++|.+
T Consensus 28 g~~F~~lA~~~S~ 40 (93)
T 1zk6_A 28 GEKFEDLAKEYST 40 (93)
T ss_dssp TCCHHHHHHHHCC
T ss_pred CCCHHHHHHHhCC
Confidence 7899999999975
No 30
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.86 E-value=5.6e+02 Score=26.15 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhc
Q 014093 354 ESIPALHKIRKYLVEATEEASVAYNKAVTRLR-EYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLK 423 (431)
Q Consensus 354 EkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~-~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~ 423 (431)
+-+.++..|.+.+. ..++........-.-|. -|++.|..|+++..|-.+=+.--+...=.+++++..|.
T Consensus 298 e~l~i~~~i~e~l~-~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~ 367 (413)
T 4hpq_C 298 EYISVFEGISALIQ-KFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLE 367 (413)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777877774 45555555555555566 89999999999988877766654444445555554443
No 31
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=21.43 E-value=59 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHH
Q 014093 391 DPRFDNIARQYHDIV 405 (431)
Q Consensus 391 G~eFd~LvrEY~~L~ 405 (431)
|.+|.++|++|..=.
T Consensus 29 G~~F~~lA~~~S~d~ 43 (102)
T 2kgj_A 29 GGDFAALAKEKSADI 43 (102)
T ss_dssp TSCHHHHHHHTCTTH
T ss_pred CCCHHHHHHHhCCCc
Confidence 789999999997643
No 32
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.27 E-value=2.6e+02 Score=20.92 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=47.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcC
Q 014093 351 YTQESIPALHKIRKYLVEATEEASVAYNKAVTRLREYQGVDPRFDNIARQYHDIVKKLENMQWTIHQVEMDLKR 424 (431)
Q Consensus 351 YTpEkV~ALrkIR~~Le~A~~e~eq~~~~s~~~L~~Ye~LG~eFd~LvrEY~~L~q~IenkrWaL~E~~~~~~~ 424 (431)
++|+.+.+.-.=-..-...++..-..+......|... =-|...+.-...|.+.+....+..=+|.++...|..
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN-WEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655554433333344444445555555566553 468888888888888888888888888888777653
No 33
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=20.78 E-value=82 Score=24.52 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHH
Q 014093 391 DPRFDNIARQYHD 403 (431)
Q Consensus 391 G~eFd~LvrEY~~ 403 (431)
|.+|+++|++|.+
T Consensus 27 g~~F~~lA~~~S~ 39 (92)
T 1jns_A 27 GADFGKLAKKHSI 39 (92)
T ss_dssp TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHhCC
Confidence 7899999999975
No 34
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=20.24 E-value=85 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhhcCC-hhHHHHHHHHHH
Q 014093 372 EASVAYNKAVTRLREYQGVD-PRFDNIARQYHD 403 (431)
Q Consensus 372 e~eq~~~~s~~~L~~Ye~LG-~eFd~LvrEY~~ 403 (431)
++++.+.....+|.. | .+|.+||++|.+
T Consensus 87 ~A~~~~~~i~~~l~~----g~~~F~~lA~~~Sd 115 (166)
T 3tc5_A 87 EALELINGYIQKIKS----GEEDFESLASQFSD 115 (166)
T ss_dssp HHHHHHHHHHHHHHH----TSSCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHc----CccCHHHHHHHhCc
Confidence 344444444445543 6 699999999985
Done!