Query 014094
Match_columns 431
No_of_seqs 306 out of 2428
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 3.8E-59 8.2E-64 481.1 36.5 280 20-311 2-296 (408)
2 PRK11573 hypothetical protein; 100.0 2.9E-58 6.2E-63 474.9 34.5 277 23-311 2-296 (413)
3 COG4536 CorB Putative Mg2+ and 100.0 1.9E-58 4.1E-63 452.8 24.4 291 12-311 2-309 (423)
4 COG1253 TlyC Hemolysins and re 100.0 3.2E-54 7E-59 447.5 36.3 289 12-311 3-313 (429)
5 KOG2118 Predicted membrane pro 100.0 5.9E-33 1.3E-37 291.1 7.1 302 4-307 4-311 (498)
6 PRK15094 magnesium/cobalt effl 100.0 2E-28 4.4E-33 242.4 18.9 148 154-310 24-173 (292)
7 PF01595 DUF21: Domain of unkn 100.0 5.5E-27 1.2E-31 215.8 19.8 168 16-191 3-183 (183)
8 COG4535 CorC Putative Mg2+ and 100.0 3.7E-28 7.9E-33 226.1 11.5 154 149-311 19-174 (293)
9 TIGR00400 mgtE Mg2+ transporte 99.7 2.1E-16 4.6E-21 165.5 15.8 134 164-307 89-233 (449)
10 COG3448 CBS-domain-containing 99.7 1.6E-15 3.4E-20 146.1 20.2 136 164-307 202-353 (382)
11 COG2524 Predicted transcriptio 99.7 9E-17 1.9E-21 152.1 9.4 107 196-307 164-272 (294)
12 TIGR01302 IMP_dehydrog inosine 99.6 2.6E-15 5.7E-20 157.3 15.5 132 164-308 44-183 (450)
13 COG4109 Predicted transcriptio 99.6 5.2E-15 1.1E-19 145.5 11.9 112 192-307 171-287 (432)
14 PRK05567 inosine 5'-monophosph 99.5 2.9E-13 6.3E-18 143.2 16.8 130 164-307 51-186 (486)
15 cd04603 CBS_pair_KefB_assoc Th 99.5 3.1E-13 6.8E-18 113.5 12.4 91 215-307 2-94 (111)
16 PRK10892 D-arabinose 5-phospha 99.5 1.7E-13 3.7E-18 137.7 11.5 104 202-307 200-307 (326)
17 cd04618 CBS_pair_5 The CBS dom 99.5 7.7E-13 1.7E-17 109.6 11.8 79 215-307 2-80 (98)
18 cd04641 CBS_pair_28 The CBS do 99.5 8.8E-13 1.9E-17 112.0 12.2 91 215-307 2-103 (120)
19 COG3620 Predicted transcriptio 99.4 3.2E-13 6.9E-18 119.7 9.3 118 183-307 39-166 (187)
20 cd04630 CBS_pair_17 The CBS do 99.4 9.7E-13 2.1E-17 110.6 12.0 92 215-307 2-98 (114)
21 cd04605 CBS_pair_MET2_assoc Th 99.4 1.4E-12 3.1E-17 108.4 11.7 91 215-307 3-93 (110)
22 cd04619 CBS_pair_6 The CBS dom 99.4 1.4E-12 3E-17 110.0 11.6 91 215-307 2-97 (114)
23 PRK11543 gutQ D-arabinose 5-ph 99.4 7.1E-13 1.5E-17 132.8 11.2 103 203-307 196-301 (321)
24 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.4E-12 3.1E-17 110.8 11.4 91 215-307 3-107 (124)
25 cd04626 CBS_pair_13 The CBS do 99.4 1.3E-12 2.9E-17 109.0 10.9 91 215-307 2-95 (111)
26 cd04623 CBS_pair_10 The CBS do 99.4 2E-12 4.3E-17 107.6 11.8 91 215-307 2-97 (113)
27 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.4E-12 3E-17 108.7 10.8 91 215-307 2-94 (111)
28 COG2239 MgtE Mg/Co/Ni transpor 99.4 1.8E-12 3.9E-17 134.7 13.8 116 186-307 114-234 (451)
29 cd04596 CBS_pair_DRTGG_assoc T 99.4 2.1E-12 4.5E-17 107.5 11.4 89 215-307 3-91 (108)
30 PRK07807 inosine 5-monophospha 99.4 2.2E-12 4.8E-17 135.8 13.2 100 202-307 87-186 (479)
31 cd04631 CBS_pair_18 The CBS do 99.4 2.4E-12 5.3E-17 109.5 11.1 92 215-307 2-108 (125)
32 cd04642 CBS_pair_29 The CBS do 99.4 3.3E-12 7.1E-17 109.6 11.9 91 215-307 2-109 (126)
33 cd04627 CBS_pair_14 The CBS do 99.4 2.7E-12 5.8E-17 109.5 10.7 92 215-307 2-106 (123)
34 cd04593 CBS_pair_EriC_assoc_ba 99.4 3.4E-12 7.4E-17 107.3 11.1 92 215-308 2-97 (115)
35 PRK01862 putative voltage-gate 99.4 2.5E-12 5.3E-17 138.9 12.0 103 201-307 444-550 (574)
36 cd04621 CBS_pair_8 The CBS dom 99.4 4.3E-12 9.3E-17 111.1 11.3 91 215-307 2-119 (135)
37 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 5.9E-12 1.3E-16 104.5 11.4 90 215-307 2-94 (111)
38 cd04643 CBS_pair_30 The CBS do 99.4 5.7E-12 1.2E-16 105.6 11.3 89 215-307 2-99 (116)
39 cd04639 CBS_pair_26 The CBS do 99.4 4.5E-12 9.8E-17 105.6 10.5 91 215-307 2-94 (111)
40 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 7.8E-12 1.7E-16 103.8 11.8 90 215-307 2-94 (111)
41 cd04803 CBS_pair_15 The CBS do 99.4 6.6E-12 1.4E-16 106.4 11.4 91 215-307 2-105 (122)
42 cd04588 CBS_pair_CAP-ED_DUF294 99.4 7.7E-12 1.7E-16 104.0 11.4 90 215-307 2-93 (110)
43 cd04599 CBS_pair_GGDEF_assoc2 99.4 8.1E-12 1.8E-16 102.8 11.3 88 215-307 2-89 (105)
44 cd04589 CBS_pair_CAP-ED_DUF294 99.4 8.1E-12 1.8E-16 104.2 11.5 90 215-307 2-95 (111)
45 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.1E-11 2.3E-16 102.4 12.1 88 215-307 2-89 (106)
46 cd04624 CBS_pair_11 The CBS do 99.4 6.9E-12 1.5E-16 104.6 11.0 91 215-307 2-95 (112)
47 cd04801 CBS_pair_M50_like This 99.4 4.1E-12 8.9E-17 106.6 9.6 91 215-307 2-97 (114)
48 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 7.1E-12 1.5E-16 104.4 11.0 91 215-307 2-96 (114)
49 cd04617 CBS_pair_4 The CBS dom 99.3 6E-12 1.3E-16 106.7 10.5 92 215-308 2-99 (118)
50 cd04640 CBS_pair_27 The CBS do 99.3 5.8E-12 1.3E-16 108.2 10.5 91 215-307 2-108 (126)
51 cd04594 CBS_pair_EriC_assoc_ar 99.3 1.2E-11 2.7E-16 102.4 12.1 85 217-307 4-88 (104)
52 cd04610 CBS_pair_ParBc_assoc T 99.3 1.2E-11 2.7E-16 102.1 11.9 88 215-307 3-90 (107)
53 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 1.1E-11 2.3E-16 102.7 11.5 90 215-307 3-92 (109)
54 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1E-11 2.2E-16 103.4 11.3 90 215-307 3-94 (110)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.1E-11 2.4E-16 103.2 11.4 90 215-307 2-95 (111)
56 PLN02274 inosine-5'-monophosph 99.3 1.5E-11 3.3E-16 130.3 14.8 109 190-307 91-203 (505)
57 cd04607 CBS_pair_NTP_transfera 99.3 1.3E-11 2.8E-16 103.4 11.4 90 216-307 4-96 (113)
58 cd04635 CBS_pair_22 The CBS do 99.3 1.1E-11 2.4E-16 105.0 11.1 91 215-307 2-105 (122)
59 cd04636 CBS_pair_23 The CBS do 99.3 1.1E-11 2.5E-16 107.1 11.2 91 215-307 2-116 (132)
60 cd04601 CBS_pair_IMPDH This cd 99.3 1.5E-11 3.2E-16 102.0 11.3 90 215-307 3-93 (110)
61 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.5E-11 3.2E-16 103.6 11.3 90 215-307 2-105 (122)
62 cd04586 CBS_pair_BON_assoc Thi 99.3 9.2E-12 2E-16 108.1 10.3 91 215-307 3-119 (135)
63 cd04608 CBS_pair_PALP_assoc Th 99.3 4.3E-12 9.4E-17 109.4 8.1 81 215-297 3-87 (124)
64 cd04615 CBS_pair_2 The CBS dom 99.3 1.7E-11 3.7E-16 102.4 11.4 89 217-307 4-96 (113)
65 cd04629 CBS_pair_16 The CBS do 99.3 1.1E-11 2.3E-16 103.7 10.1 91 215-307 2-98 (114)
66 cd04591 CBS_pair_EriC_assoc_eu 99.3 1.4E-11 3.1E-16 102.9 10.6 86 214-307 2-89 (105)
67 cd04614 CBS_pair_1 The CBS dom 99.3 2.1E-11 4.4E-16 100.4 11.3 78 215-307 2-79 (96)
68 PRK07107 inosine 5-monophospha 99.3 9.8E-12 2.1E-16 131.6 11.7 111 189-307 87-201 (502)
69 cd04602 CBS_pair_IMPDH_2 This 99.3 2.1E-11 4.5E-16 102.6 11.1 91 215-307 3-97 (114)
70 cd04606 CBS_pair_Mg_transporte 99.3 1.7E-11 3.8E-16 102.1 10.4 85 219-307 2-91 (109)
71 cd04632 CBS_pair_19 The CBS do 99.3 2E-11 4.3E-16 104.7 11.0 91 215-307 2-109 (128)
72 cd04638 CBS_pair_25 The CBS do 99.3 4E-11 8.7E-16 99.3 12.3 89 215-307 2-90 (106)
73 cd04620 CBS_pair_7 The CBS dom 99.3 2.1E-11 4.5E-16 102.3 10.7 90 215-307 2-98 (115)
74 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.4E-11 5.2E-16 127.8 13.4 99 202-307 86-184 (475)
75 cd04637 CBS_pair_24 The CBS do 99.3 1.6E-11 3.4E-16 104.2 9.7 90 215-307 2-105 (122)
76 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.3E-11 5E-16 101.4 10.6 90 215-307 2-96 (113)
77 cd04802 CBS_pair_3 The CBS dom 99.3 3.7E-11 8E-16 100.2 11.7 90 215-307 2-96 (112)
78 cd04622 CBS_pair_9 The CBS dom 99.3 4.6E-11 1E-15 99.6 12.1 90 215-307 2-96 (113)
79 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.4E-11 5.3E-16 101.3 10.3 91 215-307 3-97 (114)
80 TIGR01137 cysta_beta cystathio 99.3 2E-11 4.3E-16 128.0 12.1 105 195-307 328-436 (454)
81 PTZ00314 inosine-5'-monophosph 99.3 2.9E-11 6.4E-16 128.0 13.3 108 191-307 88-199 (495)
82 cd04625 CBS_pair_12 The CBS do 99.3 4.7E-11 1E-15 99.6 11.0 90 215-307 2-96 (112)
83 cd04633 CBS_pair_20 The CBS do 99.3 4.3E-11 9.2E-16 101.2 10.7 90 215-307 2-105 (121)
84 cd04584 CBS_pair_ACT_assoc Thi 99.3 4.2E-11 9.1E-16 101.1 10.5 91 215-307 2-105 (121)
85 cd04609 CBS_pair_PALP_assoc2 T 99.2 7.3E-11 1.6E-15 97.6 10.8 88 215-307 2-93 (110)
86 COG0517 FOG: CBS domain [Gener 99.2 1.7E-10 3.7E-15 96.6 11.5 95 208-307 3-101 (117)
87 cd04598 CBS_pair_GGDEF_assoc T 99.2 9.2E-11 2E-15 98.8 9.8 90 215-307 2-102 (119)
88 cd04634 CBS_pair_21 The CBS do 99.2 1.2E-10 2.6E-15 102.6 10.9 90 215-307 2-127 (143)
89 TIGR00393 kpsF KpsF/GutQ famil 99.2 8.3E-11 1.8E-15 114.6 10.1 101 204-307 155-258 (268)
90 cd02205 CBS_pair The CBS domai 99.2 2.2E-10 4.7E-15 93.8 11.1 91 215-307 2-96 (113)
91 COG2905 Predicted signal-trans 99.1 3.1E-10 6.8E-15 118.2 8.8 106 198-307 143-252 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.4E-09 3.1E-14 95.4 8.6 95 215-311 2-120 (133)
93 PRK14869 putative manganese-de 98.9 6.1E-09 1.3E-13 112.0 12.0 56 203-262 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.7 4.7E-08 1E-12 72.3 6.2 37 271-307 1-37 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 6.4E-08 1.4E-12 71.6 5.1 54 206-263 1-54 (57)
96 PRK10070 glycine betaine trans 98.5 1.7E-06 3.6E-11 89.8 13.0 100 204-307 274-374 (400)
97 KOG2550 IMP dehydrogenase/GMP 98.4 5.2E-07 1.1E-11 91.1 8.1 135 164-307 72-209 (503)
98 KOG1764 5'-AMP-activated prote 98.4 1.3E-06 2.9E-11 89.8 11.3 91 215-307 238-340 (381)
99 TIGR01186 proV glycine betaine 98.3 9.1E-06 2E-10 83.3 13.5 87 217-307 253-339 (363)
100 KOG0474 Cl- channel CLC-7 and 98.3 1.2E-06 2.6E-11 92.6 6.3 104 201-307 579-728 (762)
101 TIGR00400 mgtE Mg2+ transporte 97.9 4.9E-06 1.1E-10 87.6 2.8 99 202-306 193-291 (449)
102 COG2524 Predicted transcriptio 97.9 3.2E-05 6.9E-10 74.3 6.7 40 268-307 171-210 (294)
103 cd04603 CBS_pair_KefB_assoc Th 97.8 2.9E-05 6.4E-10 64.8 5.8 56 203-262 55-110 (111)
104 PRK07107 inosine 5-monophospha 97.8 0.00011 2.5E-09 78.2 11.2 101 201-305 158-260 (502)
105 cd04617 CBS_pair_4 The CBS dom 97.7 5.4E-05 1.2E-09 63.8 5.7 61 201-262 55-117 (118)
106 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 7.6E-05 1.6E-09 61.8 6.2 59 200-262 55-113 (114)
107 cd04597 CBS_pair_DRTGG_assoc2 97.7 0.00011 2.3E-09 62.3 6.9 55 204-262 58-112 (113)
108 cd04801 CBS_pair_M50_like This 97.6 8.5E-05 1.9E-09 61.9 5.3 58 203-262 56-113 (114)
109 cd04619 CBS_pair_6 The CBS dom 97.6 0.0001 2.2E-09 61.7 5.4 57 202-262 57-113 (114)
110 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.00012 2.6E-09 61.9 5.9 39 269-307 58-96 (113)
111 PRK14869 putative manganese-de 97.6 8.5E-05 1.8E-09 80.1 6.2 103 202-307 244-375 (546)
112 cd04618 CBS_pair_5 The CBS dom 97.6 0.00015 3.2E-09 59.8 5.8 46 216-262 52-97 (98)
113 PRK07807 inosine 5-monophospha 97.5 0.00026 5.5E-09 75.2 8.4 95 204-307 148-246 (479)
114 COG3448 CBS-domain-containing 97.5 8E-05 1.7E-09 72.9 4.2 39 269-307 245-283 (382)
115 TIGR03520 GldE gliding motilit 97.5 0.034 7.4E-07 58.0 23.5 89 203-297 254-350 (408)
116 cd04607 CBS_pair_NTP_transfera 97.5 0.00021 4.6E-09 59.3 5.6 56 203-262 57-112 (113)
117 cd04640 CBS_pair_27 The CBS do 97.5 0.00014 3E-09 62.1 4.5 60 202-262 62-125 (126)
118 TIGR01303 IMP_DH_rel_1 IMP deh 97.5 0.00051 1.1E-08 72.8 9.5 97 204-307 146-244 (475)
119 cd04585 CBS_pair_ACT_assoc2 Th 97.4 0.00023 5E-09 59.3 5.4 58 201-262 64-121 (122)
120 KOG0475 Cl- channel CLC-3 and 97.4 0.00085 1.8E-08 71.6 10.6 101 206-307 545-677 (696)
121 PTZ00314 inosine-5'-monophosph 97.4 0.001 2.3E-08 70.9 11.4 102 202-307 157-260 (495)
122 cd04623 CBS_pair_10 The CBS do 97.4 0.0003 6.4E-09 58.0 5.6 55 203-262 58-112 (113)
123 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.0003 6.6E-09 59.2 5.5 58 201-262 66-123 (124)
124 PLN02274 inosine-5'-monophosph 97.4 0.0018 4E-08 69.2 12.6 103 202-307 161-267 (505)
125 cd04627 CBS_pair_14 The CBS do 97.4 0.00037 8E-09 59.0 5.9 52 206-261 70-121 (123)
126 cd04625 CBS_pair_12 The CBS do 97.4 0.00033 7.2E-09 57.9 5.4 55 203-262 57-111 (112)
127 cd04610 CBS_pair_ParBc_assoc T 97.3 0.00037 8.1E-09 56.9 5.6 56 203-262 51-106 (107)
128 cd04630 CBS_pair_17 The CBS do 97.3 0.00037 8E-09 58.1 5.6 56 202-262 58-113 (114)
129 cd04620 CBS_pair_7 The CBS dom 97.3 0.00041 8.8E-09 57.7 5.8 57 202-262 56-114 (115)
130 cd04582 CBS_pair_ABC_OpuCA_ass 97.3 0.00056 1.2E-08 55.9 6.4 54 205-262 52-105 (106)
131 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00048 1E-08 56.8 5.7 57 203-262 57-113 (114)
132 cd04621 CBS_pair_8 The CBS dom 97.3 0.00045 9.7E-09 60.2 5.7 56 202-262 79-134 (135)
133 cd04596 CBS_pair_DRTGG_assoc T 97.3 0.00045 9.8E-09 56.9 5.5 57 202-262 51-107 (108)
134 cd04615 CBS_pair_2 The CBS dom 97.3 0.0005 1.1E-08 56.9 5.6 57 202-262 56-112 (113)
135 cd04626 CBS_pair_13 The CBS do 97.3 0.00055 1.2E-08 56.5 5.8 55 203-262 56-110 (111)
136 cd04593 CBS_pair_EriC_assoc_ba 97.3 0.00054 1.2E-08 57.1 5.8 56 204-262 58-114 (115)
137 COG0517 FOG: CBS domain [Gener 97.3 0.0009 2E-08 55.5 7.1 54 205-261 63-117 (117)
138 PRK10892 D-arabinose 5-phospha 97.3 0.00053 1.1E-08 69.0 6.7 58 201-263 266-323 (326)
139 cd04633 CBS_pair_20 The CBS do 97.3 0.0004 8.6E-09 58.2 4.9 57 201-262 64-120 (121)
140 KOG1764 5'-AMP-activated prote 97.3 0.0011 2.4E-08 68.4 9.0 97 211-308 159-268 (381)
141 cd04636 CBS_pair_23 The CBS do 97.3 0.0005 1.1E-08 59.0 5.5 56 202-262 76-131 (132)
142 cd04595 CBS_pair_DHH_polyA_Pol 97.2 0.00069 1.5E-08 55.8 5.9 56 202-262 54-109 (110)
143 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.00063 1.4E-08 56.2 5.5 56 202-262 55-110 (111)
144 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00061 1.3E-08 55.5 5.4 55 203-262 50-104 (105)
145 cd04622 CBS_pair_9 The CBS dom 97.2 0.00067 1.5E-08 56.0 5.6 56 203-262 57-112 (113)
146 cd04641 CBS_pair_28 The CBS do 97.2 0.0008 1.7E-08 56.6 6.1 52 207-262 68-119 (120)
147 cd04631 CBS_pair_18 The CBS do 97.2 0.0006 1.3E-08 57.5 5.3 57 202-262 68-124 (125)
148 smart00116 CBS Domain in cysta 97.2 0.0011 2.3E-08 45.3 5.7 30 278-307 1-30 (49)
149 COG3620 Predicted transcriptio 97.2 0.00046 1E-08 62.0 4.6 38 270-307 66-103 (187)
150 cd04587 CBS_pair_CAP-ED_DUF294 97.2 0.00062 1.4E-08 56.2 5.2 55 204-262 58-112 (113)
151 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.00065 1.4E-08 56.8 5.3 57 201-262 64-120 (121)
152 cd04629 CBS_pair_16 The CBS do 97.2 0.00062 1.3E-08 56.3 5.1 55 203-262 59-113 (114)
153 cd04586 CBS_pair_BON_assoc Thi 97.2 0.00064 1.4E-08 58.6 5.3 57 201-262 78-134 (135)
154 cd04800 CBS_pair_CAP-ED_DUF294 97.2 0.00072 1.6E-08 55.7 5.3 55 203-262 56-110 (111)
155 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00099 2.1E-08 54.7 6.1 54 204-262 50-103 (104)
156 PRK11543 gutQ D-arabinose 5-ph 97.1 0.00081 1.8E-08 67.4 6.6 58 202-263 261-318 (321)
157 cd04601 CBS_pair_IMPDH This cd 97.1 0.00091 2E-08 54.8 5.8 56 203-262 53-109 (110)
158 cd04803 CBS_pair_15 The CBS do 97.1 0.00086 1.9E-08 56.2 5.7 57 202-262 65-121 (122)
159 cd04802 CBS_pair_3 The CBS dom 97.1 0.00085 1.8E-08 55.4 5.5 56 202-262 56-111 (112)
160 cd04611 CBS_pair_PAS_GGDEF_DUF 97.1 0.00092 2E-08 54.9 5.7 57 202-262 54-110 (111)
161 cd04612 CBS_pair_SpoIVFB_EriC_ 97.1 0.001 2.3E-08 54.6 6.0 55 204-262 56-110 (111)
162 PRK05567 inosine 5'-monophosph 97.1 0.0019 4.1E-08 68.9 9.4 99 203-307 146-247 (486)
163 cd04583 CBS_pair_ABC_OpuCA_ass 97.1 0.00095 2.1E-08 54.6 5.6 55 204-262 54-108 (109)
164 cd04602 CBS_pair_IMPDH_2 This 97.1 0.00076 1.7E-08 56.2 5.1 57 204-262 57-113 (114)
165 cd04635 CBS_pair_22 The CBS do 97.1 0.00086 1.9E-08 56.2 5.3 57 202-262 65-121 (122)
166 cd04606 CBS_pair_Mg_transporte 97.1 0.00096 2.1E-08 55.1 5.4 56 203-262 52-107 (109)
167 cd04639 CBS_pair_26 The CBS do 97.1 0.00091 2E-08 55.1 5.3 55 204-262 56-110 (111)
168 cd04643 CBS_pair_30 The CBS do 97.0 0.00086 1.9E-08 55.6 4.7 55 202-262 61-115 (116)
169 smart00116 CBS Domain in cysta 97.0 0.0015 3.3E-08 44.5 5.2 46 216-263 2-47 (49)
170 cd04632 CBS_pair_19 The CBS do 97.0 0.0011 2.5E-08 56.2 5.2 58 202-262 69-127 (128)
171 cd04637 CBS_pair_24 The CBS do 97.0 0.0012 2.6E-08 55.5 5.0 55 204-262 67-121 (122)
172 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.0027 5.8E-08 55.5 7.3 30 278-307 2-31 (133)
173 cd04642 CBS_pair_29 The CBS do 96.9 0.0018 3.9E-08 55.0 6.0 52 207-262 74-125 (126)
174 cd04614 CBS_pair_1 The CBS dom 96.9 0.0018 3.9E-08 52.8 5.7 45 216-262 51-95 (96)
175 cd04605 CBS_pair_MET2_assoc Th 96.9 0.0026 5.6E-08 52.2 6.7 54 205-262 56-109 (110)
176 cd04624 CBS_pair_11 The CBS do 96.9 0.0027 5.9E-08 52.3 6.5 56 203-262 56-111 (112)
177 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0038 8.3E-08 64.5 8.7 94 198-307 268-362 (382)
178 cd04608 CBS_pair_PALP_assoc Th 96.8 0.0051 1.1E-07 52.6 7.9 31 277-307 2-32 (124)
179 cd04588 CBS_pair_CAP-ED_DUF294 96.8 0.0023 4.9E-08 52.6 5.5 55 204-262 55-109 (110)
180 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0023 4.9E-08 52.7 5.1 53 205-262 58-110 (111)
181 PRK01862 putative voltage-gate 96.8 0.0026 5.5E-08 69.2 6.8 58 203-263 511-569 (574)
182 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.003 6.4E-08 52.3 5.6 49 209-262 56-104 (105)
183 TIGR01137 cysta_beta cystathio 96.7 0.0037 8.1E-08 65.7 7.4 39 269-307 335-373 (454)
184 cd04634 CBS_pair_21 The CBS do 96.7 0.0042 9.1E-08 54.4 6.5 56 202-262 87-142 (143)
185 cd04598 CBS_pair_GGDEF_assoc T 96.6 0.0035 7.6E-08 52.2 5.1 57 202-262 59-118 (119)
186 TIGR00393 kpsF KpsF/GutQ famil 96.6 0.0048 1E-07 60.0 6.4 39 269-307 155-194 (268)
187 COG2905 Predicted signal-trans 96.5 0.004 8.8E-08 66.0 6.1 75 184-265 193-270 (610)
188 PRK15094 magnesium/cobalt effl 96.5 0.0068 1.5E-07 60.4 7.1 86 205-296 134-228 (292)
189 COG4175 ProV ABC-type proline/ 96.4 0.008 1.7E-07 60.1 7.0 103 192-307 262-364 (386)
190 cd04638 CBS_pair_25 The CBS do 96.4 0.0063 1.4E-07 49.8 5.4 53 205-262 53-105 (106)
191 cd02205 CBS_pair The CBS domai 96.2 0.014 3E-07 47.0 6.5 53 206-262 60-112 (113)
192 TIGR01302 IMP_dehydrog inosine 96.2 0.0068 1.5E-07 64.0 5.6 60 202-264 141-200 (450)
193 cd04609 CBS_pair_PALP_assoc2 T 96.2 0.0078 1.7E-07 49.1 4.7 54 203-262 56-109 (110)
194 COG2239 MgtE Mg/Co/Ni transpor 95.4 0.015 3.3E-07 61.2 4.2 60 200-263 192-251 (451)
195 KOG2550 IMP dehydrogenase/GMP 94.9 0.088 1.9E-06 54.1 7.7 101 200-307 167-270 (503)
196 COG4109 Predicted transcriptio 93.8 0.089 1.9E-06 53.2 4.9 59 201-263 246-304 (432)
197 KOG0476 Cl- channel CLC-2 and 93.3 0.2 4.4E-06 55.1 7.0 59 202-263 586-645 (931)
198 PRK11573 hypothetical protein; 93.2 0.33 7.2E-06 50.8 8.4 79 215-296 263-350 (413)
199 TIGR01186 proV glycine betaine 92.9 0.16 3.4E-06 52.3 5.3 56 203-263 301-356 (363)
200 PRK10070 glycine betaine trans 90.0 0.63 1.4E-05 48.5 6.3 57 203-264 336-392 (400)
201 COG1253 TlyC Hemolysins and re 89.9 0.83 1.8E-05 48.0 7.1 40 268-307 205-246 (429)
202 COG4536 CorB Putative Mg2+ and 84.0 3.9 8.4E-05 42.1 7.6 92 202-295 263-361 (423)
203 COG1125 OpuBA ABC-type proline 82.0 4.1 8.8E-05 40.2 6.6 83 215-307 188-291 (309)
204 KOG0474 Cl- channel CLC-7 and 66.9 6.8 0.00015 42.8 4.2 53 207-263 693-745 (762)
205 TIGR03415 ABC_choXWV_ATP choli 65.7 8.3 0.00018 40.0 4.5 55 202-263 324-378 (382)
206 COG4535 CorC Putative Mg2+ and 62.0 21 0.00045 34.8 6.0 87 205-297 134-229 (293)
207 KOG0475 Cl- channel CLC-3 and 47.4 27 0.0006 38.3 4.8 53 206-263 641-693 (696)
208 COG1125 OpuBA ABC-type proline 46.0 27 0.00059 34.5 4.1 60 201-262 246-307 (309)
209 KOG0476 Cl- channel CLC-2 and 41.7 33 0.00073 38.5 4.4 39 269-307 588-626 (931)
210 COG2216 KdpB High-affinity K+ 41.3 33 0.00072 37.0 4.2 33 228-262 417-449 (681)
211 COG4175 ProV ABC-type proline/ 28.7 64 0.0014 33.0 3.7 47 215-264 336-382 (386)
212 TIGR00811 sit silicon transpor 28.7 1.1E+02 0.0023 32.7 5.4 138 9-161 254-427 (545)
213 PF03563 Bunya_G2: Bunyavirus 27.7 1.6E+02 0.0035 29.0 6.1 25 133-157 210-234 (285)
214 PF11131 PhrC_PhrF: Rap-phr ex 27.5 51 0.0011 22.4 1.9 19 19-37 6-24 (37)
215 PF07172 GRP: Glycine rich pro 23.6 97 0.0021 25.7 3.3 13 22-34 16-28 (95)
216 PF14316 DUF4381: Domain of un 22.7 3.1E+02 0.0067 24.1 6.7 14 10-23 21-34 (146)
217 PF15284 PAGK: Phage-encoded v 22.5 1.1E+02 0.0024 23.3 3.1 24 16-39 7-30 (61)
218 PRK13664 hypothetical protein; 21.4 1.2E+02 0.0025 22.9 3.0 18 11-28 7-24 (62)
219 COG4129 Predicted membrane pro 21.3 8.4E+02 0.018 24.9 10.2 15 30-44 37-51 (332)
220 PF02419 PsbL: PsbL protein; 20.7 1.5E+02 0.0033 20.2 3.1 24 6-29 11-35 (37)
221 CHL00038 psbL photosystem II p 20.0 1.4E+02 0.0031 20.4 2.9 21 9-29 15-36 (38)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=3.8e-59 Score=481.12 Aligned_cols=280 Identities=27% Similarity=0.478 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHHcchhhHHHHHHHHHHHHHHHHHHHh----hHH
Q 014094 20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV 95 (431)
Q Consensus 20 ~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~~~~~ll~tilign~~~~~~~~~~~~----~~~ 95 (431)
++|+++||||||+|+|++|+++.||++++++|+++ |+++++++++|+++++|+++||+++|.+.+.++. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~----a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKK----EQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999998753 6678899999999999999999999876544322 222
Q ss_pred H--------HHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhHh---cCCCccc
Q 014094 96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGRVAL 164 (431)
Q Consensus 96 ~--------~~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~ll---g~~~~~~ 164 (431)
+ ...+++++|+++++|||++||++|.+||+++++++++|+++++++|+|++|++++++++++ |.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 1 1123445677899999999999999999999999999999999999999999999877654 5443 35
Q ss_pred cCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeee
Q 014094 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244 (431)
Q Consensus 165 ~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~ 244 (431)
+|+|||+.+++. +.++| ++++|+++++|+++|++++|+|+|+||.++++++.+++++ ++.+.+.+++|||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 799999999973 33446 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred eCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 014094 245 YEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 311 (431)
Q Consensus 245 d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEyG~ 311 (431)
+++.|+++|+|+.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+||||+
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 977789999999999986543333457787 578999999999999999999999999999997665
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-58 Score=474.85 Aligned_cols=277 Identities=22% Similarity=0.372 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHHcchhhHHHHHHHHHHHHHHHHHHHh----hHHH--
Q 014094 23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLVS-- 96 (431)
Q Consensus 23 illsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~~~~~ll~tilign~~~~~~~~~~~~----~~~~-- 96 (431)
+++||||||+|+|++|++|.||++++++|+++ |+++++++++|+++++|+++||+++|.+.+.+.. .+++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999854 6678899999999999999999998865543322 2221
Q ss_pred -HHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhH---hcCCC----ccccCHH
Q 014094 97 -AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR----VALFRRA 168 (431)
Q Consensus 97 -~~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~l---lg~~~----~~~~s~e 168 (431)
.+.+++++|+++++|||++||++|.+||+++++++++|+++++++|+|++|+++++++.+ +|.+. ...+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 233456678899999999999999999999999999999999999999999998877654 56543 2368999
Q ss_pred HHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC
Q 014094 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP 248 (431)
Q Consensus 169 EL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~ 248 (431)
||+.+++. +. +.++++|+++++|+++|++.+|+|+|+||+++++++.+++++ ++.+.+.+++|||+|||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999973 22 359999999999999999999999999999999999999998 999999999999999999888
Q ss_pred CcEEEEEEhhhhhccCCC-Cc---ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 014094 249 TNIIGLILVKNLLTIHPE-DE---VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 311 (431)
Q Consensus 249 ~~ivGIV~~kDLl~~~~~-~~---~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEyG~ 311 (431)
|+++|++|.||++..... .. ..+.++ +||+.+||+++++.++++.|++++.|+|+|+||||+
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~ 296 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD 296 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCC
Confidence 999999999999864322 11 223455 689999999999999999999999999999998876
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-58 Score=452.75 Aligned_cols=291 Identities=27% Similarity=0.442 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHHcchhhHHHHHHHHHHHHHHHHHHH
Q 014094 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (431)
Q Consensus 12 ~~~~llvi~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~~~~~ll~tilign~~~~~~~~~~~ 91 (431)
.|..++++++|+++||||||+|||++++||.|+++++++|+++ |+++.+++++|+++++++|||||++|+..+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 3777788888999999999999999999999999999999965 778999999999999999999999987544332
Q ss_pred ----hhHHHH---HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhH---hcCCC
Q 014094 92 ----DGLVSA---WGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR 161 (431)
Q Consensus 92 ----~~~~~~---~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~l---lg~~~ 161 (431)
-.+++. ..|+.+.|+++++|+|++||++|..||++++..+++++.++.++|+|++|+++++++.+ ||...
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 223332 24567788999999999999999999999999999999999999999999999987754 56542
Q ss_pred ----ccccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcC
Q 014094 162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (431)
Q Consensus 162 ----~~~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~ 237 (431)
+...|+||++.++. +++++|...+++++|+.+++++++++|.|||+||.++..++.|++.+ ++.+.+.++.
T Consensus 158 ~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 34689999999998 55666888888999999999999999999999999999999999998 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEEhhhhhccCCCCc-ccccccc--cCCCceecCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 014094 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-VPVKSVT--IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 311 (431)
Q Consensus 238 ~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~-~~V~dim--~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEyG~ 311 (431)
|+|+|||.++.|+++|++|.||++++..+.+ ..-.+++ ..+++|||+.+++.+.|..|++++.|++.||||||+
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~ 309 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGD 309 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCc
Confidence 9999999988899999999999998755433 2222332 478999999999999999999999999999998875
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.2e-54 Score=447.54 Aligned_cols=289 Identities=29% Similarity=0.517 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHHcchhhHHHHHHHHHHHHHHHHHHH
Q 014094 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (431)
Q Consensus 12 ~~~~llvi~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~~~~~ll~tilign~~~~~~~~~~~ 91 (431)
.+..++++++|+++|||||++|+|++|++|.|+++++++|+++ |..++++.++++.+++++++|+++++.....+.
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999999999999999998754 667889999999999999999998876543332
Q ss_pred hhH----HHHHH---------HHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhHh-
Q 014094 92 DGL----VSAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL- 157 (431)
Q Consensus 92 ~~~----~~~~~---------a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~ll- 157 (431)
... +..+. .++++|+++++|||++||++|++||++++++.++|+++++++|+|++|+++++++.++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111 1456788999999999999999999999999999999999999999999999988765
Q ss_pred --cCC----CccccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHH
Q 014094 158 --GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMN 231 (431)
Q Consensus 158 --g~~----~~~~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~ 231 (431)
|.+ .....+.++++ +++ ++.++|.++++|++|++|+++|++++|+++||||+++++++.+.+++ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 332 22346777888 776 56678999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEecC
Q 014094 232 LILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQY 309 (431)
Q Consensus 232 ~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~--~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEy 309 (431)
.+.+++|||+|||+++.|+++|++|.||++.....++ ...... .+|+++||+++++.++|++|++.+.|+|+|+|||
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999988899999999999998654432 222222 4699999999999999999999999999999988
Q ss_pred CC
Q 014094 310 NK 311 (431)
Q Consensus 310 G~ 311 (431)
|+
T Consensus 312 G~ 313 (429)
T COG1253 312 GG 313 (429)
T ss_pred CC
Confidence 76
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.97 E-value=5.9e-33 Score=291.11 Aligned_cols=302 Identities=54% Similarity=0.861 Sum_probs=271.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-HHHHHhHHHHcchhhHHHHHHHHHH
Q 014094 4 EYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNAA 82 (431)
Q Consensus 4 ~~~~~~~~~~~~llvi~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~-~a~~il~l~~~~~~ll~tilign~~ 82 (431)
...||+..++..+-++++|++++++|||.+.++++++-..++.+.+.|..++++ .+++++...+..+++++|+++||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~ 83 (498)
T KOG2118|consen 4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI 83 (498)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence 467999998888877778999999999999999999999999999999887765 5677888888899999999999999
Q ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhHhcCCC
Q 014094 83 AMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161 (431)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~llg~~~ 161 (431)
++.+ +++++...++.|.++.+++..+++|||++|++++.+|...+...+.++.+++.++++|+.|+++++ ++.+|...
T Consensus 84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~ 162 (498)
T KOG2118|consen 84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL 162 (498)
T ss_pred ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence 9988 777777777778888889999999999999999999999999999999999999999999999998 88888887
Q ss_pred ccccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCcee
Q 014094 162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 241 (431)
Q Consensus 162 ~~~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sri 241 (431)
...+.+.++..++..++.|+++ |.+..+|..++.+++++.++.++++|+|..+++.++.+..+.++....+.++||||+
T Consensus 163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri 241 (498)
T KOG2118|consen 163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI 241 (498)
T ss_pred ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence 7788889999999988888766 999999999999999999999999999999999999999998777888889999999
Q ss_pred eeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 242 PVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 242 PV~d~~~~~ivGIV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
||+++...+.+|.+-...++.+. .....++.+.+.++.+.+|++++..+.++.|++.+.|++.|..
T Consensus 242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 99997766777776666666654 3345788888899999999999999999999999999999976
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=2e-28 Score=242.36 Aligned_cols=148 Identities=26% Similarity=0.517 Sum_probs=128.5
Q ss_pred HhHhcCCCccccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHH
Q 014094 154 DVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLI 233 (431)
Q Consensus 154 ~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m 233 (431)
.+++|.+. .|++||+.+++ ++.++|.|+++|+++++++++|.+.+|+++|+||.++++++.+++++ ++.+.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 33455443 48999999998 45567999999999999999999999999999999999999999998 999999
Q ss_pred HhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 014094 234 LEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYN 310 (431)
Q Consensus 234 ~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEyG 310 (431)
.+++|+|+|||+++.|+++|+|+.+|++..... ...++.++ ++++++|++++++.++++.|++++.|++||+||||
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G 173 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG 173 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC
Confidence 999999999998666899999999999864321 22347787 57778999999999999999999999999999654
No 7
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.95 E-value=5.5e-27 Score=215.76 Aligned_cols=168 Identities=29% Similarity=0.471 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHHcchhhHHHHHHHHHHHHHHHHHHHhh--
Q 014094 16 IVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDG-- 93 (431)
Q Consensus 16 llvi~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~~~~~ll~tilign~~~~~~~~~~~~~-- 93 (431)
++++++++++||||||+|+|++++++.+++.++++|++ .++++.++++||+++++|+++||++++.+.+.+...
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999874 366788999999999999999999988765543322
Q ss_pred --HH----HHHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhHh---cCCC--c
Q 014094 94 --LV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGR--V 162 (431)
Q Consensus 94 --~~----~~~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~l~~Plv~~l~~~~~~ll---g~~~--~ 162 (431)
++ +.+.++++.++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.++++ |.+. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 22 22344556778899999999999999999999999999999999999999999999887664 4442 4
Q ss_pred cccCHHHHHHHHHhcccccccCCCCCHHH
Q 014094 163 ALFRRAELKTLVNLHGNEAGKGGELTHDE 191 (431)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~G~L~~~E 191 (431)
..+|+|||+.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 5689999999998 556779998876
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=226.13 Aligned_cols=154 Identities=27% Similarity=0.506 Sum_probs=136.9
Q ss_pred HHHHHHhHhcCCCccccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHH
Q 014094 149 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKE 228 (431)
Q Consensus 149 l~~~~~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~e 228 (431)
+.++++.+|..+ +-+++||..+++ ++++.+.++.+-..|+++++++.+.+|+|||+||.++++++.++++. +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 344554555433 347899999997 56677999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEE
Q 014094 229 LMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVV 306 (431)
Q Consensus 229 a~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VV 306 (431)
.+..+.++.||||||+.++.+++.||+..|||+..... ....+.++ .||+++||++..+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 99999999999999999889999999999999986433 34678887 8999999999999999999999999999999
Q ss_pred ecCCC
Q 014094 307 RQYNK 311 (431)
Q Consensus 307 DEyG~ 311 (431)
|||||
T Consensus 170 DEfGg 174 (293)
T COG4535 170 DEFGG 174 (293)
T ss_pred eccCC
Confidence 99988
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.70 E-value=2.1e-16 Score=165.53 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=113.8
Q ss_pred ccCHHHHHHHHHhcccccccC------CCCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHh--
Q 014094 164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 235 (431)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~------G~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~-- 235 (431)
.++.||+..+++. ..++ +.++++|++.+++++++++.+|+++|++ +++++++++|+. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 3678888888873 2333 4799999999999999999999999995 889999999998 99999985
Q ss_pred ---cCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 236 ---KGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 236 ---~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++...+||+| +.++++|+|+.+|++...+ +.+++++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 162 ~~~~~~~~v~Vvd-~~~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTN-ESKHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEEC-CCCeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 3344566666 4578999999999986543 3579999888888999999999999999999999999999
No 10
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-15 Score=146.08 Aligned_cols=136 Identities=18% Similarity=0.325 Sum_probs=114.2
Q ss_pred ccCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhh-------cccccccccccccCcceEEEeCCCChHHHHHHHHHhc
Q 014094 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGAL-------ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK 236 (431)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~G~L~~~E~~~i~~~l-------~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~ 236 (431)
.|+++|+...++ +.+|-=++++++-+.+.+-. .+.+.++.|||++ +|++++.+++++ ++.+++.+|
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 488999998887 33444677777655443322 4678899999996 999999999998 999999999
Q ss_pred CCceeeeeeCCCCcEEEEEEhhhhhcc-CCC--------CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 237 GHSRVPVYYEEPTNIIGLILVKNLLTI-HPE--------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 237 ~~sriPV~d~~~~~ivGIV~~kDLl~~-~~~--------~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++..+||.| +..+++|+|+.+|+++. .+. .+.+++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d-~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLD-EHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccc-cccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 999999998 45789999999999872 111 34679999988999999999999999999999999999999
No 11
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=9e-17 Score=152.10 Aligned_cols=107 Identities=16% Similarity=0.298 Sum_probs=97.4
Q ss_pred HHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--Ccccccc
Q 014094 196 AGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKS 273 (431)
Q Consensus 196 ~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~~~V~d 273 (431)
..+..+++.+|+++|++ +++++.+++|++ |+.+++.+++++..||+|+ |+++|+++..|+..+..+ ....|++
T Consensus 164 ~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~~ 238 (294)
T COG2524 164 SKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVSD 238 (294)
T ss_pred eeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHHH
Confidence 34567899999999997 889999999998 9999999999999999984 489999999999886444 3478999
Q ss_pred cccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 274 VTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 274 im~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+|.++++++.+|+.+.||++.|.++++..++|+|
T Consensus 239 ~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 239 YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 9999999999999999999999999999999999
No 12
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.64 E-value=2.6e-15 Score=157.25 Aligned_cols=132 Identities=17% Similarity=0.302 Sum_probs=112.4
Q ss_pred ccCHHHHHHHHHhcccccccCCCCCH-----HHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCC
Q 014094 164 LFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (431)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~G~L~~-----~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~ 238 (431)
.+|++|+..++.. .+..|.+.+ +|.+++++++++++ +|.+ +++++++++++. ++++.|.++++
T Consensus 44 tvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~~ 111 (450)
T TIGR01302 44 TVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKGI 111 (450)
T ss_pred ccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcCC
Confidence 5799999999873 345688985 89999999997665 4554 668999999998 99999999999
Q ss_pred ceeeeeeCCC--CcEEEEEEhhhhhccCCCCccccccccc-CCCceecCCCCHHHHHHHHHhCCCeEEEEEec
Q 014094 239 SRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 308 (431)
Q Consensus 239 sriPV~d~~~--~~ivGIV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDE 308 (431)
+++||++++. ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|++++.+.+||+|+
T Consensus 112 s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 112 SGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 9999998543 68999999999976432 3467999987 48999999999999999999999999999993
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.60 E-value=5.2e-15 Score=145.51 Aligned_cols=112 Identities=22% Similarity=0.362 Sum_probs=99.2
Q ss_pred HHHHHHhh-----cccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC
Q 014094 192 TTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE 266 (431)
Q Consensus 192 ~~~i~~~l-----~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~ 266 (431)
..|+..++ .=+-++|.|||+|..+..++..+++++ +..++..+.|++||||+|. ..+++|+|+.||+....+.
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~~~ 248 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKKPS 248 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCCCC
Confidence 34454444 335568999999999999999999998 9999999999999999984 5689999999999876554
Q ss_pred CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 ~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++..+|.+++.+|.+.+++..+.+.|--.+..++||+|
T Consensus 249 --t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~ 287 (432)
T COG4109 249 --TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD 287 (432)
T ss_pred --ccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEc
Confidence 789999999999999999999999999999999999999
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.51 E-value=2.9e-13 Score=143.24 Aligned_cols=130 Identities=20% Similarity=0.278 Sum_probs=111.1
Q ss_pred ccCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCC
Q 014094 164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (431)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~G~L~-----~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~ 238 (431)
.+|++||...+. +.+..|.|. +++.++++++.+ ++++|.+ +++++++++++. ++++.|.++++
T Consensus 51 ~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~~ 118 (486)
T PRK05567 51 TVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYGI 118 (486)
T ss_pred CcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhCC
Confidence 579999999996 445567787 477888988875 5567774 778999999998 99999999999
Q ss_pred ceeeeeeCCCCcEEEEEEhhhhhccCCCCccccccccc-CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 239 sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++||++ +.++++|+|+.+|+..... ...++.++|. ++++++++++++.++++.|.+++.+.+||+|
T Consensus 119 ~~lpVvd-~~g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD 186 (486)
T PRK05567 119 SGVPVVD-ENGKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD 186 (486)
T ss_pred CEEEEEc-cCCEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999998 4679999999999975432 2357899987 7899999999999999999999999999999
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.1e-13 Score=113.52 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=79.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccCCCceecCCCCHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|+.....+. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457899999998 9999999999999999984 57899999999998743321 2568999988899999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999998
No 16
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.48 E-value=1.7e-13 Score=137.69 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=90.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccC
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR 277 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r 277 (431)
...+|+++|++.+++.++++++++. ++++.|.++++..+||++ ++|+++|+|+.+|+.+.... ...++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd-~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICD-DNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEc-CCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999998644788999999998 999999998988888887 45789999999999764321 23579999989
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++++++.++++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999998
No 17
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=7.7e-13 Score=109.62 Aligned_cols=79 Identities=14% Similarity=0.318 Sum_probs=71.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
+++++++++++. ++.+.|.+++++.+||+++++++++|+++.+|+.+... +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578999999998 99999999999999999854478999999999975321 6789999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 68 m~~~~~~~lpVvd 80 (98)
T cd04618 68 LLKNKIHRLPVID 80 (98)
T ss_pred HHHCCCCEeeEEE
Confidence 9999999999999
No 18
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=8.8e-13 Score=112.04 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=75.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----cccc------ccccCCCceec
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVK------SVTIRRIPRVP 283 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~-----~~V~------dim~r~v~~V~ 283 (431)
++.++++++++. ++.+.|.+++++++||+++ .++++|+++.+|++.....+. .++. +.|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 9999999999999999984 578999999999986432110 1122 23345678999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 284 ETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 284 ~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999999
No 19
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.45 E-value=3.2e-13 Score=119.69 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=93.7
Q ss_pred cCCCCCHHH---HHHHHHhhcc--cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEh
Q 014094 183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (431)
Q Consensus 183 ~~G~L~~~E---~~~i~~~l~l--~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~ 257 (431)
|.|.+++.- +++++...+. ...+++.+|+. +++.+.+++++. ++++.|.++|+|.+||+++ |+++|-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 358887753 3444444333 44678999985 899999999998 9999999999999999974 789999999
Q ss_pred hhhhccCCC-----CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 258 KNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 258 kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.|+.+..-+ ....|+++|-.++++|+++.++..+-+.+..+ +.+.|++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e 166 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE 166 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe
Confidence 999875322 24689999999999999999999888887665 4556665
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=9.7e-13 Score=110.61 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=79.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-C---C-CcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P---E-DEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~-~---~-~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++.. . . ...++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 9999999999999999984337899999999998631 1 1 22568899888899999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999999
No 21
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.4e-12 Score=108.43 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=79.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.++++++++. ++++.|.+++++++||+++ .|+++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567899999998 9999999999999999984 47999999999998653333345888888899999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 22
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.4e-12 Score=109.96 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=79.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.++++++++. ++.+.|.++++..+||+++ .++++|+++.+|+++... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 356789999998 9999999999999999984 578999999999986321 123578899888999999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999999
No 23
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.42 E-value=7.1e-13 Score=132.77 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=89.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC---CCCcccccccccCCC
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---PEDEVPVKSVTIRRI 279 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~---~~~~~~V~dim~r~v 279 (431)
..+|+++|.+..++.++++++++. ++.+.|.+++...+||+|+ .++++|+|+.+|+.+.. .....++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999998633388999999998 9999999999999999984 57899999999987532 122457899998899
Q ss_pred ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 ~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++++.++++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 24
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.4e-12 Score=110.75 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=79.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------CcccccccccCCCc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 280 (431)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+|+.+|++..... ...++.++|.++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999998 9999999999999999984 4789999999999764322 12368888888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 281 RVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 281 ~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++.++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 999999999999999999999999999
No 25
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.3e-12 Score=108.96 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=79.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---cccccccccCCCceecCCCCHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRVPETLPLYEI 291 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~---~~~V~dim~r~v~~V~~~~~l~~a 291 (431)
++.++++++++. ++++.|.+++++++||+++ .++++|+++.+|++...... ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456799999998 9999999999999999984 47899999999998753321 246888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 014094 292 LNEFQKGHSHMAVVVR 307 (431)
Q Consensus 292 L~~m~~~~~~~a~VVD 307 (431)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999999
No 26
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2e-12 Score=107.56 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=78.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----CcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.+++++.++. ++.+.|.+++++++||+++ .++++|+++.+|++..... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999998 9999999999999999984 4789999999999864221 13478899878889999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 27
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.42 E-value=1.4e-12 Score=108.66 Aligned_cols=91 Identities=43% Similarity=0.708 Sum_probs=77.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc--ccccccccCCCceecCCCCHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~--~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
++.++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|++....... .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 678899999998 99999999999999999853378999999999987543221 346665 57889999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 80 EEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHhcCCcEEEEEE
Confidence 999999999999999
No 28
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.8e-12 Score=134.72 Aligned_cols=116 Identities=23% Similarity=0.258 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEhhhh
Q 014094 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNL 260 (431)
Q Consensus 186 ~L~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~-----~sriPV~d~~~~~ivGIV~~kDL 260 (431)
.+++++++.++..+.+++.+++.+|+. ++++++++.|+. ++++++++.+ ...+.|+| ..++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD-~~~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVD-EKGKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEEC-CccceEEEeeHHHH
Confidence 478999999999999999999999996 899999999998 9999999543 45567777 45689999999999
Q ss_pred hccCCCCcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 261 LTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 261 l~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+...++ .++.++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus 190 l~a~~~--~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAEPD--ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCCcH--hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 875544 679999988899999999999999999999999999999
No 29
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.1e-12 Score=107.52 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=79.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.++++++++. ++.+.|.+++++++||+++ .++++|+++.+|++.... ..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 667899999998 9999999999999999984 578999999999986432 357889987889999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~Vv~ 91 (108)
T cd04596 79 MIWEGIEMLPVVD 91 (108)
T ss_pred HHHcCCCeeeEEc
Confidence 9999999999998
No 30
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=2.2e-12 Score=135.77 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=89.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCce
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~ 281 (431)
...+++++|++ +++++++++++. ++++.|.+++++.+||+| +.++++|+|+.+|+..... ..++.++|.+++++
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVD-EEGRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 46678899985 778999999998 999999999999999998 4578999999999975433 25799999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999999999
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.4e-12 Score=109.50 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=79.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------------cccccccccCCC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI 279 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~---------------~~~V~dim~r~v 279 (431)
++.+++++.++. ++++.|.+++++++||++++.++++|+|+.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 457889999998 9999999999999999985437999999999998643221 246888887889
Q ss_pred ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 ~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 32
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.3e-12 Score=109.59 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=76.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc-----------------cccccccC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR 277 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~-----------------~V~dim~r 277 (431)
++.+++++.++. ++++.|.+++++.+||+|+ .++++|+++.+|++.....+.. ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 9999999999999999984 4799999999999875322111 12245667
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 889999999999999999999999999999
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=2.7e-12 Score=109.52 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=75.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--Cc-----------ccccccccCCCce
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DE-----------VPVKSVTIRRIPR 281 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~-----------~~V~dim~r~v~~ 281 (431)
++.++++++++. ++++.|.+++++++||+|++.++++|+|+.+|+++.... .. ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 457899999998 999999999999999998533789999999998763211 00 1122456788889
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999998
No 34
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38 E-value=3.4e-12 Score=107.30 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=78.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|+.....+ ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345788999998 9999999999999999984 4789999999999864321 123478888888999999999999
Q ss_pred HHHHHHhCCCeEEEEEec
Q 014094 291 ILNEFQKGHSHMAVVVRQ 308 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVDE 308 (431)
+++.|.+++.+.+||+|+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 80 ALDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHHcCCceeeEEeC
Confidence 999999999999999993
No 35
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=2.5e-12 Score=138.92 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=89.5
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC--C-C-Cccccccccc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P-E-DEVPVKSVTI 276 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~--~-~-~~~~V~dim~ 276 (431)
++..+|+|+|++ +..++++++++. ++.+.+.+++++.+||+|+ +++++|+|+.+|+.+.. . . ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 466789999986 557899999998 9999999999999999984 57899999999998731 1 1 2357889988
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 277 r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++++++.++++.|.+++.+.+||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8999999999999999999999999999999
No 36
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=4.3e-12 Score=111.12 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=79.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------------------------C
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D 267 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~---------------------------~ 267 (431)
++.++++++++. ++++.|.+.+++++||+| +.++++|+++.+|++..... .
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVD-DNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEEC-CCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 457889999998 999999999999999998 45799999999999864321 1
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 268 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 268 ~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2468899888889999999999999999999999999998
No 37
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.37 E-value=5.9e-12 Score=104.52 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=78.6
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc---ccccccccCCCceecCCCCHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRVPETLPLYEI 291 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~---~~V~dim~r~v~~V~~~~~l~~a 291 (431)
++.++++++++. ++.+.|.+.+++++||+++ ++++|+++.+|+........ .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 457799999998 9999999999999999984 78999999999987543321 25778888899999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 014094 292 LNEFQKGHSHMAVVVR 307 (431)
Q Consensus 292 L~~m~~~~~~~a~VVD 307 (431)
++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.7e-12 Score=105.61 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=75.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC---------cccccccccCCCceecCC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRVPET 285 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~---------~~~V~dim~r~v~~V~~~ 285 (431)
++++++.++++. ++.+.|.+++++++||+|+ .++++|+++.+|+++..... ..++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 9999999999999999984 57899999999998743210 356888887889999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEe
Q 014094 286 LPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 286 ~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998764 589998
No 39
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=4.5e-12 Score=105.56 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=79.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--CCcccccccccCCCceecCCCCHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--EDEVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~--~~~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|+..... ....++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 9999999899999999984 478999999999986421 123578899888999999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 40
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.36 E-value=7.8e-12 Score=103.79 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=78.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccCCCceecCCCCHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 291 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~~a 291 (431)
++.++++++++. ++.+.|.+.++..+||+++ ++++|+++.+|+++.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456799999998 9999999999999999984 789999999999865321 2357888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 014094 292 LNEFQKGHSHMAVVVR 307 (431)
Q Consensus 292 L~~m~~~~~~~a~VVD 307 (431)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 41
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.6e-12 Score=106.36 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=78.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-------------CcccccccccCCCce
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR 281 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~-------------~~~~V~dim~r~v~~ 281 (431)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|++..... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 9999999999999999984 4789999999999864221 235678888788999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 42
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.36 E-value=7.7e-12 Score=103.97 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=78.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccCCCceecCCCCHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
++.+++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 457799999998 9999999999999999984 7899999999998754322 2468888778889999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 43
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=8.1e-12 Score=102.82 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=78.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.++++++++. ++.+.|.+++++++||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 999999999999999997 3 78999999999987543 246888888889999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999999
No 44
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.35 E-value=8.1e-12 Score=104.16 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=78.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----EDEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~----~~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++++++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++.... ....++.++|.++++.+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 346789999998 9999999999999999984 68999999999986421 1235788888788999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 45
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.35 E-value=1.1e-11 Score=102.42 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=76.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.++++++++. ++++.|.++++.++||+++ .|+++|+++.+|++.... .++.++|.+++..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456889999998 9999999999999999974 479999999999987532 34778877777889999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 46
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.9e-12 Score=104.60 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=78.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---CcccccccccCCCceecCCCCHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRVPETLPLYEI 291 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~~a 291 (431)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|++..... ...++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 346789999998 9999999999999999985 4799999999999764221 2356888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 014094 292 LNEFQKGHSHMAVVVR 307 (431)
Q Consensus 292 L~~m~~~~~~~a~VVD 307 (431)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999999999999998
No 47
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=4.1e-12 Score=106.64 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=75.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccC--CCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR--RIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~-~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~~~V~dim~r--~v~~V~~~~~l~ 289 (431)
++.++++++++. ++.+.|.+++ ++++||+++ .++++|+++.+|++..... ...++.++|.. +++.+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456899999998 9999887665 899999984 4789999999999875432 23568888642 356899999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|++++.+.+||+|
T Consensus 80 ~a~~~~~~~~~~~l~Vv~ 97 (114)
T cd04801 80 EVLKLLEEQGLDELAVVE 97 (114)
T ss_pred HHHHHHHHCCCCeeEEEc
Confidence 999999999999999998
No 48
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.35 E-value=7.1e-12 Score=104.38 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=79.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.++++++++. ++++.|.+.+++++||+++ .++++|+++.+|+...... +..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456799999998 9999999999999999984 4789999999999864221 125788998888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 49
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=6e-12 Score=106.69 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=77.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccC--CCceecCCCCH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRVPETLPL 288 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r--~v~~V~~~~~l 288 (431)
++.++++++++. ++.+.|.+++...+||+++ .++++|+|+.+|+.+.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 457899999998 9999999999999999984 4689999999998864321 13457788764 68899999999
Q ss_pred HHHHHHHHhCCCeEEEEEec
Q 014094 289 YEILNEFQKGHSHMAVVVRQ 308 (431)
Q Consensus 289 ~~aL~~m~~~~~~~a~VVDE 308 (431)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999993
No 50
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=5.8e-12 Score=108.16 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=73.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----------CCCcccccccccCCCce--e
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPR--V 282 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~----------~~~~~~V~dim~r~v~~--V 282 (431)
++.+++.++++. ++++.|.++++..+||+++ .++++|+++.+|+.... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356899999998 9999999999999999984 47899999999997521 11235688897655433 3
Q ss_pred ----cCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 283 ----PETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 283 ----~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 51
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.35 E-value=1.2e-11 Score=102.42 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=75.8
Q ss_pred EEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHHHH
Q 014094 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQ 296 (431)
Q Consensus 217 vtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~ 296 (431)
.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|++.... .++.++|..++.+++++.++.++++.|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 4688999998 9999999999999999984 79999999999986432 3477788788899999999999999999
Q ss_pred hCCCeEEEEEe
Q 014094 297 KGHSHMAVVVR 307 (431)
Q Consensus 297 ~~~~~~a~VVD 307 (431)
+++.+.+||+|
T Consensus 78 ~~~~~~~~Vv~ 88 (104)
T cd04594 78 KNKTRWCPVVD 88 (104)
T ss_pred HcCcceEEEEE
Confidence 99999999998
No 52
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.2e-11 Score=102.07 Aligned_cols=88 Identities=16% Similarity=0.342 Sum_probs=77.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999998 9999999889999999984 78999999999986432 346889887888999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999998
No 53
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.34 E-value=1.1e-11 Score=102.65 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=78.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++..+++++++. ++.+.|.++++.++||+++ .++++|+++.+|++..... ..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999998 9999999999999999984 4789999999999864322 256888888888999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~vv~ 92 (109)
T cd04583 80 VLKRGPKYVPVVD 92 (109)
T ss_pred HHHcCCceeeEEC
Confidence 9999999999998
No 54
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1e-11 Score=103.39 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=79.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--CcccccccccCCCceecCCCCHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|+...... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567899999998 9999999999999999985 789999999999764321 23578899888899999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999998
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=1.1e-11 Score=103.22 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=78.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc-C-C--CCcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI-H-P--EDEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~-~-~--~~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.+++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|++.. . . ....++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567899999998 9999999999999999984 799999999999752 1 1 1235688888889999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 56
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=1.5e-11 Score=130.35 Aligned_cols=109 Identities=14% Similarity=0.204 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCC
Q 014094 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED 267 (431)
Q Consensus 190 ~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~--~~~ivGIV~~kDLl~~~~~~ 267 (431)
+.+..++.+++++ . .|++ +++++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+.... ..
T Consensus 91 ~q~~~Irkvk~~~---~--gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~ 161 (505)
T PLN02274 91 EQAAIVRKAKSRR---V--GFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR 161 (505)
T ss_pred HHHHHHHHhhccc---c--cccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence 3456666666442 2 2664 778999999998 99999999999999999853 36899999999997543 33
Q ss_pred cccccccccCC--CceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 268 EVPVKSVTIRR--IPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 268 ~~~V~dim~r~--v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..+|.++|.++ ++++++++++.++++.|.+++.+.+||+|
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD 203 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN 203 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 46899998766 77999999999999999999999999999
No 57
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.3e-11 Score=103.38 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=77.2
Q ss_pred eEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC---CCCcccccccccCCCceecCCCCHHHHH
Q 014094 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---PEDEVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 216 vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~---~~~~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
.++++.++++. ++.+.|.+.++..+||+++ +++++|+++.+|++... .....++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 36789999998 9999999999999999974 47899999999987532 1123568889877888999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999998
No 58
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.1e-11 Score=104.98 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=78.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCcccccccccCCCce
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 281 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~-------------~~~~~V~dim~r~v~~ 281 (431)
++.++++++++. ++.+.|.+++++++||++ +.++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQ-KAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEEC-CCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567899999998 999999999999999997 4579999999999976310 1234677888788899
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999998
No 59
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.1e-11 Score=107.07 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=78.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----Cc--------------------cc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DE--------------------VP 270 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~--------------------~~ 270 (431)
++.++++++++. ++.+.|.+.+++++||+++ .++++|+++.+|++..... .. .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456899999998 9999999999999999984 5789999999999764221 11 16
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 271 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 271 V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+.++|.++++.+++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7888878899999999999999999999999999999
No 60
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.32 E-value=1.5e-11 Score=101.95 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=76.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecC-CCCHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE-TLPLYEILN 293 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~-~~~l~~aL~ 293 (431)
++.+++.+.++. ++.+.|.+++++++||+++ .++++|+++.+|++.... ...++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456789999998 9999999999999999984 478999999999975432 345788987666676666 999999999
Q ss_pred HHHhCCCeEEEEEe
Q 014094 294 EFQKGHSHMAVVVR 307 (431)
Q Consensus 294 ~m~~~~~~~a~VVD 307 (431)
.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~Vv~ 93 (110)
T cd04601 80 LLHEHKIEKLPVVD 93 (110)
T ss_pred HHHHhCCCeeeEEc
Confidence 99999999999998
No 61
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.32 E-value=1.5e-11 Score=103.55 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=78.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------CcccccccccCCCc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 280 (431)
++.+++++.++. ++.+.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456799999998 9999999999999999984 799999999999864321 12457788878899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 281 RVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 281 ~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 62
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=9.2e-12 Score=108.07 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=78.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--------------------------CCc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE 268 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~--------------------------~~~ 268 (431)
++.++++++++. ++++.|.++++.++||++ +.++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd-~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVD-DDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEEC-CCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999998 999999999999999998 4578999999999975321 123
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 568888878889999999999999999999999999998
No 63
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.32 E-value=4.3e-12 Score=109.35 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=69.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC----CCCcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.++++++++. ++++.|.+++++.+||+++ .++++|+++.+|++... .....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999998 9999999999999999984 47899999999998521 12346899999999999999999999
Q ss_pred HHHHHHh
Q 014094 291 ILNEFQK 297 (431)
Q Consensus 291 aL~~m~~ 297 (431)
+.+.|..
T Consensus 81 v~~~~~~ 87 (124)
T cd04608 81 LSRILET 87 (124)
T ss_pred HHhhccc
Confidence 9997654
No 64
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.7e-11 Score=102.39 Aligned_cols=89 Identities=11% Similarity=0.186 Sum_probs=77.4
Q ss_pred EEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-CC---CcccccccccCCCceecCCCCHHHHH
Q 014094 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRVPETLPLYEIL 292 (431)
Q Consensus 217 vtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~-~~---~~~~V~dim~r~v~~V~~~~~l~~aL 292 (431)
..+++++++. ++++.|.+++++++||+++ .++++|+++.+|++... .. ...++.++|.+++.++++++++.+++
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 4 SCVVLNTDIA-RAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred EEeeCCCcHH-HHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 6789999998 9999999999999999984 47899999999998632 11 23578888888899999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 014094 293 NEFQKGHSHMAVVVR 307 (431)
Q Consensus 293 ~~m~~~~~~~a~VVD 307 (431)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vvd 96 (113)
T cd04615 82 WLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHcCCCeeeEEC
Confidence 999999999999998
No 65
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.1e-11 Score=103.66 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=78.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC------CCcccccccccCCCceecCCCCH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRVPETLPL 288 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~------~~~~~V~dim~r~v~~V~~~~~l 288 (431)
++.++++++++. ++.+.|.+++++++||+++ .++++|+++.+|+++... ....++.++|.++++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 9999999999999999984 468999999999986321 12357888887888899999999
Q ss_pred HHHHHHHHhCCCeEEEEEe
Q 014094 289 YEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 289 ~~aL~~m~~~~~~~a~VVD 307 (431)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999999999999
No 66
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.31 E-value=1.4e-11 Score=102.94 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=75.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHH
Q 014094 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEI 291 (431)
Q Consensus 214 ~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~--~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~a 291 (431)
+....+++++++. ++.+.+.+++++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3667899999998 99999999999999999852 4789999999999764321 677888899999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 014094 292 LNEFQKGHSHMAVVVR 307 (431)
Q Consensus 292 L~~m~~~~~~~a~VVD 307 (431)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999997
No 67
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.1e-11 Score=100.39 Aligned_cols=78 Identities=9% Similarity=0.168 Sum_probs=69.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
++.+++++.++. ++++.|.+++++.+||+| +.++++|+++.+|+.... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d-~~~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLD-DDGKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEEC-CCCCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 467899999998 999999999999999997 457899999999997632 16789999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999998
No 68
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=9.8e-12 Score=131.59 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCC
Q 014094 189 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPE 266 (431)
Q Consensus 189 ~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~--~~~ivGIV~~kDLl~~~~~ 266 (431)
+++.++++.+.++. .+.++.| .++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 45555555554433 2233332 5899999998 99999999999999999852 4799999999999754323
Q ss_pred CcccccccccC--CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 DEVPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 ~~~~V~dim~r--~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
...+|.++|.+ +++++++++++.++++.|.+++.+.+||+|
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD 201 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD 201 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 34689999875 678899999999999999999999999999
No 69
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.30 E-value=2.1e-11 Score=102.63 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=76.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCcccccccccCCCceecC--CCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPE--TLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~--~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~--~~~l~~ 290 (431)
++.++++++++. ++.+.|.+++++++||+|++ .++++|+++.+|++..... ..++.++|.++...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS-ETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc-CCCHHHhcCCCceEEECCCCCCHHH
Confidence 456789999998 99999999999999999842 4789999999999754322 35688998777777755 999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999998
No 70
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.7e-11 Score=102.12 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=73.1
Q ss_pred EeCCCChHHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHH
Q 014094 219 IDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILN 293 (431)
Q Consensus 219 v~~d~tv~~ea~~~m~~~~-----~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~ 293 (431)
+++++++. ++++.|.+++ +..+||+++ .++++|+++.+|++.... ..++.++|..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLADP--DTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcCCC--cchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 56889998 9999998877 468899974 478999999999987432 35688887778899999999999999
Q ss_pred HHHhCCCeEEEEEe
Q 014094 294 EFQKGHSHMAVVVR 307 (431)
Q Consensus 294 ~m~~~~~~~a~VVD 307 (431)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 71
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2e-11 Score=104.73 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=77.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----------------CCcccccccccC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----------------EDEVPVKSVTIR 277 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~-----------------~~~~~V~dim~r 277 (431)
++.++++++++. ++++.|.+.+++.+||+++ .++++|+++.+|+..... ....++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 9999999999999999984 478999999999874311 012467888888
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++++++.++++.|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999999885
No 72
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4e-11 Score=99.26 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=77.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNE 294 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~ 294 (431)
+++++.+++++. ++++.|.+.+++++||++++ ++++|+++.++++.... ..++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567899999998 89999999999999999844 78999999999986432 245778777888999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 014094 295 FQKGHSHMAVVVR 307 (431)
Q Consensus 295 m~~~~~~~a~VVD 307 (431)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 73
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=2.1e-11 Score=102.33 Aligned_cols=90 Identities=13% Similarity=0.334 Sum_probs=74.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccCCCceecCC--CC
Q 014094 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPET--LP 287 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~-~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~--~~ 287 (431)
++.+++.+.++. ++.+.|.+++ +..+||.+ + ++++|+++.+|++..... ...++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 346789999998 9999998888 67778776 3 789999999999864321 1256888887888889887 78
Q ss_pred HHHHHHHHHhCCCeEEEEEe
Q 014094 288 LYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 288 l~~aL~~m~~~~~~~a~VVD 307 (431)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999999
No 74
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.29 E-value=2.4e-11 Score=127.83 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=87.9
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCce
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~ 281 (431)
...+++++|.+ +++++++++++. ++++.|.+++++.+||+|+ ++++|+|+.+|+..... ..++.++|.+++++
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceE
Confidence 46678899985 668999999998 9999999999999999874 58999999999975533 35799999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD 184 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVD 184 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 99999999999999999999999999
No 75
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.6e-11 Score=104.21 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=77.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------CcccccccccCCCc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 280 (431)
++.++++++++. ++.+.|.+++++++||+++ ++++|+++.+|+...... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567899999998 9999999999999999984 789999999999753110 12457888888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 281 RVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 281 ~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 76
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.29 E-value=2.3e-11 Score=101.41 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=76.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc-C-C--CCc-ccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI-H-P--EDE-VPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~-~-~--~~~-~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.+++++.++. ++.+.|.+++.+++||+++ ++++|+++.+|++.. . . ... .++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456789999998 9999999999999999984 799999999999742 1 1 111 568888878888999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~l~Vv~ 96 (113)
T cd04587 79 EALHLMVQGKFRHLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCcccEEC
Confidence 999999999999999998
No 77
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=3.7e-11 Score=100.19 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=77.6
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC--C---CCcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P---EDEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~--~---~~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|++... . ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999984 3899999999998632 1 123568888878888999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 78
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=4.6e-11 Score=99.60 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=77.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc-cC---CC-CcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IH---PE-DEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~-~~---~~-~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++. .. .. ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 457899999998 9999999999999999984 89999999999863 11 11 12348888888899999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 79
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.28 E-value=2.4e-11 Score=101.30 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=77.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC----CcccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.++++++++. ++.+.+.+.+++++||+++ .++++|+++.++++..... ...++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 456788999998 9999999889999999984 4789999999998764321 124688998888899999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 80
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.28 E-value=2e-11 Score=128.04 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=86.1
Q ss_pred HHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC----CCccc
Q 014094 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----EDEVP 270 (431)
Q Consensus 195 i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~----~~~~~ 270 (431)
+.+. +...+|+++|.+ ++.++++++++. ++++.|.+++++.+||+|+ .++++|+|+.+|++.... ....+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 688999999986 678999999998 9999999999999999984 478999999999986321 12347
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 271 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 271 V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+.++|.++++++++++++.++++.|.+++ ..+|+|
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~ 436 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTE 436 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence 88998888889999999999999998864 344444
No 81
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.28 E-value=2.9e-11 Score=128.00 Aligned_cols=108 Identities=10% Similarity=0.225 Sum_probs=89.6
Q ss_pred HHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEhhhhhccCCCCc
Q 014094 191 ETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDE 268 (431)
Q Consensus 191 E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~--~~~ivGIV~~kDLl~~~~~~~ 268 (431)
+.+.++.+.+ +++.|.+ +++++++++++. ++.+.|.+++++.+||++++ .++++|+|+.+|+..... ..
T Consensus 88 ~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~-~~ 158 (495)
T PTZ00314 88 QVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD-KS 158 (495)
T ss_pred HHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc-CC
Confidence 4455555543 4456764 568999999998 99999999999999999853 368999999999975432 34
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIR--RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r--~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.++.++|.+ +++++++++++.++++.|.+++.+.+||+|
T Consensus 159 ~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd 199 (495)
T PTZ00314 159 TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN 199 (495)
T ss_pred CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc
Confidence 679999876 788999999999999999999999999999
No 82
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4.7e-11 Score=99.57 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=76.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-----CcccccccccCCCceecCCCCHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRVPETLPLY 289 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~ 289 (431)
++.++++++++. ++.+.|.++++..+||.+ + ++++|+++.+|++..... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567899999998 999999888888888775 3 789999999999863211 13568899877788999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 014094 290 EILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 290 ~aL~~m~~~~~~~a~VVD 307 (431)
++++.|.+++...+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 83
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4.3e-11 Score=101.20 Aligned_cols=90 Identities=14% Similarity=0.283 Sum_probs=78.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--------------CcccccccccCCCc
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--------------~~~~V~dim~r~v~ 280 (431)
++.++++++++. ++.+.|.+.+++++||+++ ++++|+++..|++..... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456799999998 9999999999999999984 799999999999764221 13467788878899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 281 RVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 281 ~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.25 E-value=4.2e-11 Score=101.10 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=78.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-------------CCcccccccccCCCce
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 281 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~-------------~~~~~V~dim~r~v~~ 281 (431)
++.++++++++. ++.+.|.+.+++++||+|+ .++++|+++.+|+..... ....++.++|.+++++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 9999999999999999985 479999999999875321 1124688888888999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 85
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.24 E-value=7.3e-11 Score=97.60 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=73.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC----cccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++..+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999998 9999999999999999984 7899999999998753221 24688888788889999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|++ .. .+||+|
T Consensus 79 ~~~~~~~-~~-~~~vv~ 93 (110)
T cd04609 79 LSELLDR-GN-VAVVVD 93 (110)
T ss_pred HHHHHHh-CC-ceeEEe
Confidence 9999988 33 478888
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=1.7e-10 Score=96.57 Aligned_cols=95 Identities=25% Similarity=0.394 Sum_probs=82.3
Q ss_pred cccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cc-cccccccCCCceecC
Q 014094 208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EV-PVKSVTIRRIPRVPE 284 (431)
Q Consensus 208 dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~--~~-~V~dim~r~v~~V~~ 284 (431)
++|. .+++++.++.++. ++...|.+++++++||.++ ++++|+++.+|++...... .. ++.++|.+++.++++
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4778999999998 9999999999999999973 3699999999999864332 12 588998889999999
Q ss_pred CCCHHHHHHHHHh-CCCeEEEEEe
Q 014094 285 TLPLYEILNEFQK-GHSHMAVVVR 307 (431)
Q Consensus 285 ~~~l~~aL~~m~~-~~~~~a~VVD 307 (431)
+.++.++++.|.+ ++.+.+||+|
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999999999999 7999999999
No 87
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=9.2e-11 Score=98.84 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEhhhhhccCCC-------CcccccccccCCCceecCCC
Q 014094 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRVPETL 286 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~-~sriPV~d~~~~~ivGIV~~kDLl~~~~~-------~~~~V~dim~r~v~~V~~~~ 286 (431)
++.++++++++. ++.+.|...+ ++++||+++ ++++|+++.+|++..... ...++.++|..+++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345788999998 9999998877 899999985 899999999999754221 23578899888889999999
Q ss_pred CHHHHHHHHHhCCCe---EEEEEe
Q 014094 287 PLYEILNEFQKGHSH---MAVVVR 307 (431)
Q Consensus 287 ~l~~aL~~m~~~~~~---~a~VVD 307 (431)
++.++++.|.+++.+ ..+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999988753 346777
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.2e-10 Score=102.65 Aligned_cols=90 Identities=11% Similarity=0.260 Sum_probs=77.7
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC--C--------------------------
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--E-------------------------- 266 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~--~-------------------------- 266 (431)
+++++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.... .
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999998 9999999999999999984 79999999999975321 0
Q ss_pred --------CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 --------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 --------~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12457778888899999999999999999999999999998
No 89
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.19 E-value=8.3e-11 Score=114.63 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=88.3
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCcccccccccCCCc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP 280 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~---~~~~~V~dim~r~v~ 280 (431)
.+|+++|.+. ++.++++++++. ++++.|.+.+++.+||+|+ .++++|+|+.+|+..... ....++.++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 9999999999999999984 478999999999986422 224679999988999
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 281 RVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 281 ~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++++.++++.|.+++.+.+||+|
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd 258 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVD 258 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEEC
Confidence 999999999999999999999999998
No 90
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.18 E-value=2.2e-10 Score=93.80 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=77.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc----ccccccccCCCceecCCCCHHH
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRVPETLPLYE 290 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~----~~V~dim~r~v~~V~~~~~l~~ 290 (431)
++.+++.+.++. ++.+.|.+++++++||+++ .++++|+++.+|++....... ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999998 9999999999999999985 479999999999987543211 1256777888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 014094 291 ILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 291 aL~~m~~~~~~~a~VVD 307 (431)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999999
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.07 E-value=3.1e-10 Score=118.16 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=91.1
Q ss_pred hhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc----CCCCcccccc
Q 014094 198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI----HPEDEVPVKS 273 (431)
Q Consensus 198 ~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~----~~~~~~~V~d 273 (431)
.-++--.+++++|+. +.+++++..++. ++.+.|.+.|.+.+.|++ +.+...|||+.+|+... ......+|++
T Consensus 143 ~~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~-~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~e 218 (610)
T COG2905 143 ESEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLD-DSGPLLGIVTRKDLRSRVIADGRSKTQKVSE 218 (610)
T ss_pred cchHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEc-CCCCccceeehHHHHHHHHhcCCCcccchhh
Confidence 333444568889985 567899999998 999999999999888887 45789999999999873 2233578999
Q ss_pred cccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 274 VTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 274 im~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+|+.|+++|...+.+.+|+-.|.+++++.+||.+
T Consensus 219 vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 219 VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred hhccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 9999999999999999999999999999999987
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.99 E-value=1.4e-09 Score=95.39 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=77.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc---cc------------ccccc----
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VP------------VKSVT---- 275 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~---~~------------V~dim---- 275 (431)
++.++++++++. ++++.|.+++++.+||+|+ .++++|+|+.+|++....... .. +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999998 9999999999999999984 478999999999986432111 01 23354
Q ss_pred -----cCCCceecCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 014094 276 -----IRRIPRVPETLPLYEILNEFQKGHSHMAVVVRQYNK 311 (431)
Q Consensus 276 -----~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDEyG~ 311 (431)
.++++++++++++.++++.|.+++.+.+||+|+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 367889999999999999999999999999995443
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.92 E-value=6.1e-09 Score=111.95 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=50.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..+|+++|++ ++.++++++++. ++++.|.+++++++||+|+ +|+++|+|+.+|+..
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHH
Confidence 3679999985 778999999998 9999999999999999984 479999999999865
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.68 E-value=4.7e-08 Score=72.34 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=35.0
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 271 VKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 271 V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
|+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 4678889999999999999999999999999999999
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.61 E-value=6.4e-08 Score=71.63 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=49.3
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 206 V~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
|+++|++ ++.++++++++. ++.+.|.+++++++||+|+ .++++|+++.+|++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhh
Confidence 5789997 788999999998 9999999999999999984 4899999999999864
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.7e-06 Score=89.76 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=78.7
Q ss_pred cccccccccCcc-eEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCcee
Q 014094 204 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRV 282 (431)
Q Consensus 204 ~tV~dIMtpr~~-vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V 282 (431)
.++.++|.+... .+...++.+.. ++++.|...+.+++.|+| +.++++|+++.+++...... ..++.+.+.....++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIE-RGNKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEc-CCCcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888854221 12334666776 899999999999999998 45799999999999765433 235777767778899
Q ss_pred cCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 283 PETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 283 ~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
++++++.+++..|.+.... +||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999997777 89999
No 97
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.44 E-value=5.2e-07 Score=91.15 Aligned_cols=135 Identities=14% Similarity=0.173 Sum_probs=102.7
Q ss_pred ccCHHHHHHHHHhcccccccCCCC-CHHHHHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceee
Q 014094 164 LFRRAELKTLVNLHGNEAGKGGEL-THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242 (431)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~G~L-~~~E~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriP 242 (431)
.+|+.|+...+.+++.-.-=+..- ++++..+++.+-.|.. +-++. .+.++|+.++. ++++.-..++++.+|
T Consensus 72 TVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~~----p~v~sp~~tvg-~v~~~k~~~gF~g~p 143 (503)
T KOG2550|consen 72 TVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFINN----PIVISPTTTVG-EVKEAKEKHGFSGIP 143 (503)
T ss_pred ccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---ccccC----CcccCCcccch-hhhhhcccccccccc
Confidence 467777776655432110001122 3556777888776663 33443 36789999998 999999999999999
Q ss_pred eeeCC--CCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 243 VYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 243 V~d~~--~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
|.++. ..+++|+|+.+|+-.. .+....+.++|+...++.|...++.++-+.+++.+...+||||
T Consensus 144 vTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~ 209 (503)
T KOG2550|consen 144 VTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD 209 (503)
T ss_pred cccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceec
Confidence 99643 3689999999999765 4456789999988889999999999999999999999999999
No 98
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.43 E-value=1.3e-06 Score=89.81 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=74.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCc-----cc-cccc------ccCCCcee
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VP-VKSV------TIRRIPRV 282 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~-----~~-V~di------m~r~v~~V 282 (431)
++..+..+.++. ++++.|...+++.+||++. .++.+|..+..|+.....+.. .. ++.. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 9999999999999999985 466799999999987533311 11 2111 12346889
Q ss_pred cCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 283 PETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 283 ~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.++.++..++..|..+++|.+.|||
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEc
Confidence 9999999999999999999999999
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.30 E-value=9.1e-06 Score=83.26 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=72.6
Q ss_pred EEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCceecCCCCHHHHHHHHH
Q 014094 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRVPETLPLYEILNEFQ 296 (431)
Q Consensus 217 vtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~~aL~~m~ 296 (431)
....++.+.. ++++.|...+.....|++ +.+++.|+++.+++....... ..+.+.|.....++++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVD-RQNKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEc-CCCCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3455677787 899999999999999998 457899999999997654332 3577777777889999999999999999
Q ss_pred hCCCeEEEEEe
Q 014094 297 KGHSHMAVVVR 307 (431)
Q Consensus 297 ~~~~~~a~VVD 307 (431)
+++.. +||+|
T Consensus 330 ~~~~~-~~v~~ 339 (363)
T TIGR01186 330 KAGIK-VPVVD 339 (363)
T ss_pred hCCCC-EEEEC
Confidence 99998 99999
No 100
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.2e-06 Score=92.56 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=83.9
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC----CcEEEEEEhhhhhccC-------CC---
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP----TNIIGLILVKNLLTIH-------PE--- 266 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~----~~ivGIV~~kDLl~~~-------~~--- 266 (431)
+.+++|+|+|.+ ++++++.-..+. .+.+.++.+.|..+||+|+.. +++.|+|-...++... +.
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 567889999997 899999999998 899999999999999998533 3688988877775311 00
Q ss_pred ----------------C----------------cccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 ----------------D----------------EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 ----------------~----------------~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
. -.++..+|-..+++|++++++..++..|++-+.+.+.||+
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 0 0234445555678999999999999999999999999998
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.93 E-value=4.9e-06 Score=87.59 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=81.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCCce
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v~~ 281 (431)
++.+++++|++ +++++++++++. ++++.|.++++..+||+| +.|+++|+|+.+|++....+. ..+++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56789999986 678899999998 999999999999999998 457899999999999865432 235766555555
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEE
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVV 306 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VV 306 (431)
..++..+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 5467788999999999999888775
No 102
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.85 E-value=3.2e-05 Score=74.29 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=38.4
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 268 EVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 268 ~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..+|.++|.++++++.+++++.++.+.|.+++.+-+||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence 4689999999999999999999999999999999999999
No 103
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.85 E-value=2.9e-05 Score=64.76 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||+|+ .++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 3468899975 567899999998 9999999999999999984 478999999999975
No 104
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.83 E-value=0.00011 Score=78.22 Aligned_cols=101 Identities=13% Similarity=0.218 Sum_probs=72.7
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCC-
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI- 279 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v- 279 (431)
..+.+|+++|++.++++++++++++. ++++.|.+++..++||+| +.++++|+|+.+|+++..... ....|-.-|-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSHKENP-LELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence 45678999999766889999999998 999999999999999998 446899999999999854321 11112111111
Q ss_pred -ceecCCCCHHHHHHHHHhCCCeEEEE
Q 014094 280 -PRVPETLPLYEILNEFQKGHSHMAVV 305 (431)
Q Consensus 280 -~~V~~~~~l~~aL~~m~~~~~~~a~V 305 (431)
..+... ...+-.+.+.+.+...+.|
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEee
Confidence 123332 3456777788888887654
No 105
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=5.4e-05 Score=63.75 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC--CcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~--~~ivGIV~~kDLl~ 262 (431)
+...+++++|+.-.++.++++++++. ++++.|.++++.++||+++++ ++++|+|+..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667888997323578999999998 999999999999999998543 68999999999874
No 106
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.72 E-value=7.6e-05 Score=61.76 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=50.7
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 200 ~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
++...++.++|.+ .+.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 4455679999986 557899999998 9999999999999999984 478999999999975
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.70 E-value=0.00011 Score=62.26 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=48.6
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||+++ .++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 679999986 667899999998 9999999999999999984 478999999999863
No 108
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=8.5e-05 Score=61.86 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=49.9
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+...+.++++++++. ++++.|.+++.+++||+++ .++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 457889998644566899999998 9999999999999999984 468999999999874
No 109
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.0001 Score=61.72 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.. ++.++++++++. ++++.|.+++..++||+++ +++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 34578899964 677899999998 9999999999999999984 468999999999874
No 110
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.61 E-value=0.00012 Score=61.94 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=36.5
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 468899888999999999999999999999999999999
No 111
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.61 E-value=8.5e-05 Score=80.07 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=78.8
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------------
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------- 266 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--------------- 266 (431)
...+|+++|+. .++.++++++++. ++.+.|.+++++++||+|+ +|+++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 46789999982 3788999999998 9999999999999999984 5799999999999863221
Q ss_pred ----C-------cccccccccCCCcee---cCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 ----D-------EVPVKSVTIRRIPRV---PETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 ----~-------~~~V~dim~r~v~~V---~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
. ..++.++|.+++..+ +...+...+.+.|++.+....|++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia 375 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA 375 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence 0 013456665555544 4456667888889998888877764
No 112
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.57 E-value=0.00015 Score=59.77 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.7
Q ss_pred eEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 216 vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++++++++. ++++.|.+++..++||++++.|+++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999854478999999999974
No 113
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.53 E-value=0.00026 Score=75.15 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=72.0
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccc----cccCCC
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKS----VTIRRI 279 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~d----im~r~v 279 (431)
..++++|++ ++.++++++++. ++++.|.+++..++||+|+ +++++|+|+.+|+++..... +..+ .+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999985 788999999998 9999999999999999984 46899999999999854321 1111 111222
Q ss_pred ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 ~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+.......+.++.|.+.+... +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 223345678899999999888 6677
No 114
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.53 E-value=8e-05 Score=72.87 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=37.1
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.+-.++|.|+++++++++++.++.++|++++++.+||+|
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d 283 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLD 283 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccc
Confidence 566789999999999999999999999999999999999
No 115
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.49 E-value=0.034 Score=57.99 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=67.0
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-CC--Cc-----cccccc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE--DE-----VPVKSV 274 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~-~~--~~-----~~V~di 274 (431)
..+++++|.| +.+++++.++. ++++.|++++....+|+|+ .|.++|+|+..|++... .+ ++ ..+..+
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 3457888863 57899999998 9999999999999999984 57899999999998732 11 11 112221
Q ss_pred ccCCCceecCCCCHHHHHHHHHh
Q 014094 275 TIRRIPRVPETLPLYEILNEFQK 297 (431)
Q Consensus 275 m~r~v~~V~~~~~l~~aL~~m~~ 297 (431)
......++..+++.++.+.|.-
T Consensus 329 -~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 -DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred -CCCeEEEEeccCHHHHHHHhCC
Confidence 2334668889999999999844
No 116
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.00021 Score=59.34 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||+++ .++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 3468899965 567899999998 9999999999999999984 478999999999864
No 117
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00014 Score=62.07 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=47.4
Q ss_pred cccccccccccCcceEEEe----CCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~----~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+...+..++ +++++. ++++.|.+++.+++||++++.++++|+|+..|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997533333443 688997 99999999999999999854368999999999974
No 118
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.46 E-value=0.00051 Score=72.84 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=71.0
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCC--Cce
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRR--IPR 281 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~--v~~ 281 (431)
.+++++|++ +++++++++++. ++++.|.+++..++||+|+ +++++|+|+.+|+++..... +..+..-+. --.
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 569999985 788999999998 9999999999999999984 47899999999999753321 121110000 011
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 282 VPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 282 V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+.......+.++.|.+.+... +|+|
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~-i~~D 244 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDV-LVID 244 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCE-EEEe
Confidence 344456678888888888777 4557
No 119
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.44 E-value=0.00023 Score=59.32 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=50.6
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+++||+++ .|+++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 355678999975 678899999998 9999999999999999984 478999999999975
No 120
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00085 Score=71.59 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=75.3
Q ss_pred cccccccCc---ceEEEeCC-CChHHHHHHHHHhcCCceeeeee-CCCCcEEEEEEhhhhhccC------CC--------
Q 014094 206 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIH------PE-------- 266 (431)
Q Consensus 206 V~dIMtpr~---~vvtv~~d-~tv~~ea~~~m~~~~~sriPV~d-~~~~~ivGIV~~kDLl~~~------~~-------- 266 (431)
..++|.|+. ....++.+ .+++ +....|.++.|+.+||+- ++...++|+|..+|+.... .+
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 445555432 34556555 8998 999999999999999884 4556899999999986310 00
Q ss_pred -------------CcccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 267 -------------DEVPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 267 -------------~~~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.....+++|.-.+.+|...+|...+++.|++-+.....|..
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 01346777767788899999999999999998888887754
No 121
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.001 Score=70.90 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=72.4
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccccccccCCC--
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI-- 279 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V~dim~r~v-- 279 (431)
.+.+++++|++..++++++++.++. ++.+.|.+++...+||+|+ .++++|+|+.+|+++....... ..|---|-.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~~p~a-~~D~~GrL~Vg 233 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRGYPNA-SLDSNGQLLVG 233 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcccCchh-hhccCCCEEEE
Confidence 3567999999877889999999998 9999999999999999984 5789999999999975322110 111100101
Q ss_pred ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 ~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..+.......+.++.+.+.+...+ ++|
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i-~id 260 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVL-VVD 260 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEE-EEe
Confidence 123333334677777888888776 445
No 122
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.0003 Score=57.95 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=48.8
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..+++++|.+ ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|++.
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999965 678899999998 9999999999999999984 78999999999975
No 123
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.38 E-value=0.0003 Score=59.21 Aligned_cols=58 Identities=26% Similarity=0.515 Sum_probs=50.7
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
....+++++|.+ .+.++++++++. ++++.|.+++.+++||+++ .|+++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 456678999975 678899999998 9999999999999999984 578999999999975
No 124
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.38 E-value=0.0018 Score=69.17 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=73.4
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC--cccccccccCCC
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRI 279 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~--~~~V~dim~r~v 279 (431)
.+.+|.++|++...++++++++++. ++++.|.+++..++||+|+ .++++|+|+.+|+++..... ..+..|-.-|-.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999865688999999998 9999999999999999984 57899999999998753221 111112111111
Q ss_pred --ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 --PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 --~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..|.....-.+-.+.+.+.+..++ ++|
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i-~iD 267 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVV-VLD 267 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEE-EEe
Confidence 124444444677777778888875 557
No 125
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00037 Score=58.99 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=44.9
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhh
Q 014094 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261 (431)
Q Consensus 206 V~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl 261 (431)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||+++ .++++|+|+..|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 3456764 678999999998 9999999999999999984 47899999999985
No 126
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.36 E-value=0.00033 Score=57.87 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||++ + ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhc
Confidence 4578899964 567899999998 999999999999999997 3 78999999999975
No 127
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00037 Score=56.94 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=48.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+..++++|.+ .+.++++++++. ++++.|.+++..++||+++ .|+++|+++.+|++.
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 3468899975 567899999998 9999999999999999984 478999999999974
No 128
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00037 Score=58.07 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++.++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+..|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 44578899964 678999999998 9999999999999999984 78999999999975
No 129
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.34 E-value=0.00041 Score=57.72 Aligned_cols=57 Identities=14% Similarity=0.298 Sum_probs=48.0
Q ss_pred cccccccccccCcceEEEeCC--CChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d--~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++.++|.+ ++.+++++ +++. ++++.|.+++..++||+++ .|+++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 34678899975 56778877 6887 8999999999999999984 478999999999975
No 130
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.33 E-value=0.00056 Score=55.89 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=46.9
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+++++|.+ ...++++++++. ++++.|.+++...+||+++ .++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 47888976 456799999998 9999999999999999984 478999999999874
No 131
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.30 E-value=0.00048 Score=56.78 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=49.6
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4689999986 567899999998 99999999999999999741478999999999874
No 132
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00045 Score=60.18 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ ++.++++++++. ++++.|.++++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35579999975 567899999998 9999999999999999984 78999999999875
No 133
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.29 E-value=0.00045 Score=56.94 Aligned_cols=57 Identities=16% Similarity=0.390 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ .+.++++++++. ++.+.|.+++...+||+++ .++++|+++.+|++.
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 35578999975 567899999998 9999999999999999984 468999999999874
No 134
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.28 E-value=0.0005 Score=56.88 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||+++ .|+++|+++..|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 44578888975 678899999998 9999999999999999974 468999999999864
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00055 Score=56.52 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=48.1
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4568888864 677899999998 9999999999999999984 78999999999864
No 136
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.27 E-value=0.00054 Score=57.08 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=47.9
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~-~~ivGIV~~kDLl~ 262 (431)
.+++++|.+ .+.++++++++. ++++.|.+++..++||++++. ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788864 678899999998 999999999999999998542 68999999999975
No 137
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.27 E-value=0.0009 Score=55.48 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=47.2
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHh-cCCceeeeeeCCCCcEEEEEEhhhhh
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPTNIIGLILVKNLL 261 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~-~~~sriPV~d~~~~~ivGIV~~kDLl 261 (431)
++.++|++ +++++.++.++. ++.+.|.+ ++++++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 69999985 678999999998 99999999 79999999984323899999999974
No 138
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.27 E-value=0.00053 Score=68.97 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=51.5
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 9999999999999999973 689999999999864
No 139
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.0004 Score=58.22 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=50.0
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.+.++.++|.+ ++.++++++++. ++++.|.+.+.+++||+++ ++++|+++.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 356678899975 678899999998 9999999999999999984 78999999999975
No 140
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.26 E-value=0.0011 Score=68.44 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred ccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC--C--------ccccccc---ccC
Q 014094 211 TPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--D--------EVPVKSV---TIR 277 (431)
Q Consensus 211 tpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~--~--------~~~V~di---m~r 277 (431)
+++...+++.+..++- ++...+.++++.|+||.|.+.++++.+++.+-++..... . ..++.|+ +..
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 3444547899999987 889999999999999998556799999999999864211 0 1223332 123
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEec
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVRQ 308 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVDE 308 (431)
.+..+.+++++.++++.|..++..-+||||+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 5778999999999999999999999999994
No 141
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.0005 Score=59.00 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=49.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
...++.++|.+ ++..+++++++. ++++.|.+.+..++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34478999975 678899999998 9999999999999999984 79999999999975
No 142
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.23 E-value=0.00069 Score=55.83 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=49.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ .+.++++++++. ++++.|.+++...+||++ +++++|+|+.+|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 45678899975 677899999998 999999999999999997 368999999999874
No 143
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.22 E-value=0.00063 Score=56.18 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=49.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578899975 678899999998 9999999999999999973 68999999999875
No 144
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.21 E-value=0.00061 Score=55.46 Aligned_cols=55 Identities=33% Similarity=0.430 Sum_probs=48.3
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ +..++++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 3468889975 677899999998 9999999999999999984 79999999999863
No 145
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.21 E-value=0.00067 Score=56.00 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=48.3
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..+++++|.+ .+.++++++++. ++++.|.+++..++||+++ .++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 3458899975 667899999998 9999999999999999974 478999999999975
No 146
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.0008 Score=56.64 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=44.6
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 207 ~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+++|.. ++.++++++++. ++++.|.+++.+++||+++ .++++|+|+.+|++.
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence 455643 567899999998 9999999999999999984 478999999999875
No 147
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.0006 Score=57.45 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++.++|.+ .+.++++++++. ++++.|.+.+..++||+++ .++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 45578889875 678999999998 9999999999999999974 368999999999975
No 148
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.19 E-value=0.0011 Score=45.34 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=27.4
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++++++++++.++++.|.+++.+.+||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 356789999999999999999999999998
No 149
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.19 E-value=0.00046 Score=62.00 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=35.5
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 270 PVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 270 ~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+...+|.+|++++.++.++.++++.|+.++..-+||++
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 45567999999999999999999999999999999998
No 150
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.18 E-value=0.00062 Score=56.19 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=48.1
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 578899965 567899999998 9999999999999999984 478999999999874
No 151
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.18 E-value=0.00065 Score=56.82 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=50.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
....++.++|.+ .+.+++.++++. ++++.|.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 678899999998 9999999999999999984 78999999999975
No 152
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00062 Score=56.30 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ |+++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 567899999998 9999999999999999984 78999999999975
No 153
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.00064 Score=58.58 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=50.2
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
....+++++|.+ ++.++++++++. ++++.|.+.+.+++||++ .|+++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 356689999975 678899999998 999999999999999997 378999999999875
No 154
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.16 E-value=0.00072 Score=55.74 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=48.4
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888864 678899999998 9999999999999999984 78999999999975
No 155
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.16 E-value=0.00099 Score=54.67 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=47.0
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.++.++|.+ ...++++++++. ++++.|.+++..++||++ + ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888875 567899999998 999999999999999997 3 78999999999874
No 156
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.15 E-value=0.00081 Score=67.39 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=50.7
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+|+ .++++|+|+.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 34568999986 677899999998 9999999999999999984 4689999999999864
No 157
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.15 E-value=0.00091 Score=54.82 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=46.3
Q ss_pred ccccccccccCcceEEEeC-CCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~-d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ .+..+.+ ++++. ++++.|.++++.++||+++ .++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 4578899965 3344566 99998 9999999999999999984 478999999999874
No 158
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00086 Score=56.23 Aligned_cols=57 Identities=16% Similarity=0.379 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
...++.++|.. ++.++++++++. ++++.|.+.+...+||+++ .++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 56678889854 677899999998 9999999999999999984 468999999999975
No 159
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.13 E-value=0.00085 Score=55.37 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=48.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++.++|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 44578899975 677899999998 9999999999999999984 38999999999864
No 160
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.13 E-value=0.00092 Score=54.88 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=49.0
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
...++.++|.+ ++.++++++++. ++++.|.+.+...+||+++ .|+++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 45668889875 677899999998 9999999999999999984 468999999999874
No 161
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.13 E-value=0.001 Score=54.55 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=47.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.++.++|.+ ++.+++.++++. ++++.|.+++...+||+++ .++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 457788875 678899999998 9999999999999999974 478999999999874
No 162
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.13 E-value=0.0019 Score=68.88 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=71.1
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcc---cccccccCCC
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---PVKSVTIRRI 279 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~---~V~dim~r~v 279 (431)
..+++++|++ .+++++++++++. ++++.|.+++...+||+|+ .++++|+|+.+|++........ .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4578999983 3678999999998 9999999999999999984 5789999999999874321110 1112222223
Q ss_pred ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 280 PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 280 ~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..+.+++ .+.++.|.+.+.+.+ |+|
T Consensus 223 i~~~~~~--~e~a~~L~~agvdvi-vvD 247 (486)
T PRK05567 223 VGVGADN--EERAEALVEAGVDVL-VVD 247 (486)
T ss_pred cccCcch--HHHHHHHHHhCCCEE-EEE
Confidence 3333422 788888999999855 666
No 163
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.12 E-value=0.00095 Score=54.61 Aligned_cols=55 Identities=31% Similarity=0.569 Sum_probs=47.8
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..+.++|.+ .+.++++++++. ++.+.|.+++..++||+++ .|+++|+++.+|++.
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 468888975 667899999998 9999999999999999984 468999999999874
No 164
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.11 E-value=0.00076 Score=56.22 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=45.9
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..++++|.+....+..++++++. ++++.|.+++..++||+++ .++++|+|+.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 45889997643333334499998 9999999999999999974 468999999999864
No 165
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.00086 Score=56.23 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
...++.++|.+ ++.+++.++++. ++.+.|.+++.+++||+++ .|+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 45568889864 568899999998 9999999999999999984 478999999999875
No 166
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.09 E-value=0.00096 Score=55.06 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=48.9
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.+++++|.+ ++..+++++++. ++++.|.+++...+||+++ .++++|+|+..|++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDE-EGRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhh
Confidence 4568899975 568899999998 9999999999999999984 478999999999975
No 167
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.00091 Score=55.11 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=47.9
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
..+.++|.. ++.++++++++. ++.+.|.+++..++||+++ .++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 468888864 678899999998 9999999999999999974 478999999999864
No 168
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.00086 Score=55.63 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=46.3
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ .+.++++++++. ++++.|.+++ .+||++ ++++++|+++.+|++.
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVD-DDGIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhc
Confidence 45679999976 567899999998 9999998765 599998 4478999999999975
No 169
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.03 E-value=0.0015 Score=44.55 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=39.9
Q ss_pred eEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 216 vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
+.++++++++. ++.+.|.+++++.+||+++ +++++|+++.+++...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHh
Confidence 35688999998 9999999999999999984 4789999999998753
No 170
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.0011 Score=56.24 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~-~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678899975 678899999998 9999999999999999853 4578999999999874
No 171
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0012 Score=55.46 Aligned_cols=55 Identities=33% Similarity=0.492 Sum_probs=47.9
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+++++|.+ ++.++++++++. ++++.|.+++..++||+++ .++++|+++.+|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 357888864 678899999998 9999999999999999974 478999999999975
No 172
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.96 E-value=0.0027 Score=55.53 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++.+++++++.++++.|.+++.+.+||+|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD 31 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD 31 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 467899999999999999999999999999
No 173
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0018 Score=55.02 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=44.4
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 207 ~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.|.+ ++.++++++++. ++++.|.+++..++||+++ .++++|+|+..|+++
T Consensus 74 ~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 345543 678899999998 9999999999999999984 478999999999975
No 174
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0018 Score=52.81 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=40.7
Q ss_pred eEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 216 vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++++++++. ++.+.|.+++..++||+++ .++++|+++.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 57899999998 9999999999999999984 478999999999975
No 175
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.93 E-value=0.0026 Score=52.24 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=46.6
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.++++|.+ ++.++++++++. ++++.|.+++...+||+++ .++++|+++.+|++.
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 47788864 567899999998 9999999999999999984 478999999999864
No 176
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.0027 Score=52.30 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=47.8
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.+++++|.+ ++.+++.++++. ++++.|.+++...+||+++ .++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 3468888865 577899999998 8999999999999999984 478999999999874
No 177
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.87 E-value=0.0038 Score=64.50 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=62.4
Q ss_pred hhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC-Cccccccccc
Q 014094 198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-DEVPVKSVTI 276 (431)
Q Consensus 198 ~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~-~~~~V~dim~ 276 (431)
+-...-.+++++|.|... ....+.+ . +++. ++.+++.|+|+ |+++..+....... ....+.+ +.
T Consensus 268 ~~~~~~l~a~~~m~~~~~--~~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~ 332 (382)
T TIGR03415 268 TNPLNVLTARSLMRPLTD--LEHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LE 332 (382)
T ss_pred cCcccceeHHHHhccccc--ccccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchhh-hc
Confidence 334566689999965322 2233333 2 3333 78888889873 88887776543221 2234666 47
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 277 r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
...+++++++++.+++..+.+.... ++|+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 7888999999999999998887766 45667
No 178
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.83 E-value=0.0051 Score=52.59 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=28.9
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 277 r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+++.++++++++.++++.|++++...+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999999999998
No 179
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.83 E-value=0.0023 Score=52.62 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=47.5
Q ss_pred cccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 204 ~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.++.++|.+ .+.+++++.++. ++++.|.+.+...+||+++ .++++|+++.+|++.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 457788864 667899999998 9999999999999999974 468999999999874
No 180
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.78 E-value=0.0023 Score=52.70 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=44.8
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++|. ++.++++++++. ++++.|.+++.+.+||+++ .++++|+++.+|++.
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 4566664 357899999998 9999999999999999984 478999999999864
No 181
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.77 E-value=0.0026 Score=69.17 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=50.9
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhcc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTI 263 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~-~~ivGIV~~kDLl~~ 263 (431)
+.+++|+|++ ++.++++++++. ++++.|.+++.+++||+|+++ ++++|+|+.+|+++.
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~ 569 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA 569 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence 4679999975 667899999998 999999999999999998543 479999999999874
No 182
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.74 E-value=0.003 Score=52.34 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=43.5
Q ss_pred ccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 209 IMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+|.+ ++.++++++++. ++.+.|.+++...+||++ .++++|+|+.+|++.
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 7864 667899999998 999999999999999995 368999999999975
No 183
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.71 E-value=0.0037 Score=65.70 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=36.5
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 578999889999999999999999999999999999998
No 184
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0042 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
...++.++|.+ .+.+++.++++. ++++.|.+++++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899975 678999999998 9999999999999999984 78999999999864
No 185
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.60 E-value=0.0035 Score=52.23 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=46.7
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCc---eeeeeeCCCCcEEEEEEhhhhhc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~s---riPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+++++|.+ .+.++++++++. ++++.|.+++.. ..||+++ .++++|+|+.+|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 45679999975 678899999998 999999988753 4577774 478999999999874
No 186
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.56 E-value=0.0048 Score=60.03 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.8
Q ss_pred ccccccccCC-CceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRR-IPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~-v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.+++++|.++ ++.+++++++.++++.|.+.+.+.+||+|
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd 194 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD 194 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe
Confidence 4688998888 89999999999999999999999999999
No 187
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.54 E-value=0.004 Score=65.97 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHhhc---ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhh
Q 014094 184 GGELTHDETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL 260 (431)
Q Consensus 184 ~G~L~~~E~~~i~~~l~---l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDL 260 (431)
.|.+++ +++...++. -...+|+++||. ++++++.++.+- |+.-.|.++++.++||+++ |+++|+|+..|+
T Consensus 193 ~GIvT~--~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dI 265 (610)
T COG2905 193 LGIVTR--KDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDI 265 (610)
T ss_pred cceeeh--HHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHH
Confidence 354443 456666653 345589999996 889999999998 9999999999999999973 799999999999
Q ss_pred hccCC
Q 014094 261 LTIHP 265 (431)
Q Consensus 261 l~~~~ 265 (431)
+....
T Consensus 266 l~l~s 270 (610)
T COG2905 266 LRLFS 270 (610)
T ss_pred HHhhC
Confidence 97543
No 188
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.48 E-value=0.0068 Score=60.41 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=65.2
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---Ccc------cccccc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEV------PVKSVT 275 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~---~~~------~V~dim 275 (431)
+++++|.| +++++++.++. ++++.|++++...+||+|+ .|.++|+|+..|++...-+ +.. .+..+
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 46788864 35799999998 9999999999999999984 4679999999999874211 111 12222
Q ss_pred cCCCceecCCCCHHHHHHHHH
Q 014094 276 IRRIPRVPETLPLYEILNEFQ 296 (431)
Q Consensus 276 ~r~v~~V~~~~~l~~aL~~m~ 296 (431)
....+.|+..+++.++.+.+.
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhC
Confidence 233567999999999999873
No 189
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.42 E-value=0.008 Score=60.09 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=74.1
Q ss_pred HHHHHHhhcccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCCcccc
Q 014094 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPV 271 (431)
Q Consensus 192 ~~~i~~~l~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~~~~V 271 (431)
++.++++-...-.++++||.+ .+.-....+..-.+.+...+.+.+.+.+-+++ ..++.+|+|+..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~-------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA-------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc--------
Confidence 566677767777899999985 23222222222212567788877777777776 55679999999887653
Q ss_pred cccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 272 KSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 272 ~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.+..++..+++++++.+.+....+...+++ |+|
T Consensus 332 --~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 --ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred --cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 246778889999999999999999988776 556
No 190
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.41 E-value=0.0063 Score=49.75 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=45.5
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.++|.+ .+.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46677864 567899999998 9999999999999999983 58999999999874
No 191
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.25 E-value=0.014 Score=47.03 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=45.8
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 206 V~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++|.+ ++.+++.++++. ++.+.|.+.+...+||+++ .++++|+++.+|++.
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 5677764 667899999998 9999999999999999984 479999999999874
No 192
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.21 E-value=0.0068 Score=64.04 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=52.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~ 264 (431)
.+.+++++|++ .+++++++++++. ++++.|.+++...+||+|+ .++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence 35679999984 3678999999998 9999999999999999984 57899999999999753
No 193
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.17 E-value=0.0078 Score=49.08 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=43.1
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
+.++.++|.+ ++.++++++++. ++.+.|.+ . ...||+++ .++++|+++.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhc
Confidence 3568888864 567899999998 89888887 3 34788874 478999999999975
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.015 Score=61.18 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=53.7
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 200 ~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
.-++..++++|.+ ++++++++++.+ ++.+.+.+++....||+| ++++++|+++..|++..
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidv 251 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDV 251 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHH
Confidence 4577789999987 478999999998 999999999999999998 45799999999999864
No 195
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.088 Score=54.12 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=71.1
Q ss_pred cccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC---CCccccccccc
Q 014094 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTI 276 (431)
Q Consensus 200 ~l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~---~~~~~V~dim~ 276 (431)
.=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++ +.|+++-+++..||.+... .....-+++|.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhhcCCCccccCcccceee
Confidence 335567899999965 8899999998 999999999999999998 5689999999999987421 11122234433
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 277 RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 277 r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
...+-..++. ..-+..+.+.+...+ |.|
T Consensus 243 gAaiGTre~d--K~rl~ll~~aGvdvv-iLD 270 (503)
T KOG2550|consen 243 GAAIGTRDDD--KERLDLLVQAGVDVV-ILD 270 (503)
T ss_pred eeccccccch--hHHHHHhhhcCCcEE-EEe
Confidence 3222222222 455677777887765 667
No 196
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=93.81 E-value=0.089 Score=53.20 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=51.8
Q ss_pred ccccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 201 l~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
-++.+...+|+. ..+++.+.+|+. .+...|.=.++.-+||+++ +.+++|+|+.+|+++.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~ 304 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKS 304 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHH
Confidence 366788999995 668999999998 8999999999999999984 5689999999999863
No 197
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.34 E-value=0.2 Score=55.08 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=47.7
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEhhhhhcc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTI 263 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~-~~ivGIV~~kDLl~~ 263 (431)
..+.|+++|.. ++.++..+.|.. |+.+.+.......+|++++.+ --++|.|..+.|..+
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 45679999985 899999999997 877777666699999998533 248999999998753
No 198
>PRK11573 hypothetical protein; Provisional
Probab=93.22 E-value=0.33 Score=50.79 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=59.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC-----CC-Cc---ccccccccCCCceecCC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-----PE-DE---VPVKSVTIRRIPRVPET 285 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~-----~~-~~---~~V~dim~r~v~~V~~~ 285 (431)
++..|+.+.++. ++++.|++++..-.-|+|+ .|...|+|+..|++... .+ +. ..+..+ ....+.|+..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 467899999998 9999999998888888884 57899999999998731 11 10 112222 2335679999
Q ss_pred CCHHHHHHHHH
Q 014094 286 LPLYEILNEFQ 296 (431)
Q Consensus 286 ~~l~~aL~~m~ 296 (431)
++++++-+.+.
T Consensus 340 ~~l~d~~~~l~ 350 (413)
T PRK11573 340 ANVREINKAFN 350 (413)
T ss_pred eEHHHHHHHhC
Confidence 99999998884
No 199
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.85 E-value=0.16 Score=52.26 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
...+.+.|.+ .+.++++++++. +++..+.++++. +||+| +.++++|+|+..+++..
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 301 AQGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDA 356 (363)
T ss_pred CCchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHH
Confidence 3468888865 667899999998 999999999999 99998 45799999999999874
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=90.05 E-value=0.63 Score=48.51 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=47.5
Q ss_pred ccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 014094 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (431)
Q Consensus 203 ~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~ 264 (431)
+..++++|.+ ...++++++++. +++..+.++.+. +||+| +.|+++|+|+..+++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRAL 392 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHH
Confidence 3467788864 567899999998 999999987766 99998 468999999999998753
No 201
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=89.91 E-value=0.83 Score=47.99 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=35.1
Q ss_pred ccccccccc--CCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 268 EVPVKSVTI--RRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 268 ~~~V~dim~--r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
+.+++++|+ .++.+++.+.++.++.+.+.+.+....||.|
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~ 246 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD 246 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc
Confidence 367888885 3567899999999999999999999999998
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=84.02 E-value=3.9 Score=42.05 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCC-----CCccccccccc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTI 276 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~-----~~~~~V~dim~ 276 (431)
++.+-.+++.-..+++.+|.++++. +-+..|++++-.---|+| +-|.+.|+|+..|++.-.- ..+....++-.
T Consensus 263 ~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~ 340 (423)
T COG4536 263 NEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIP 340 (423)
T ss_pred CcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhccccccCcccchhhcc
Confidence 3355566665556889999999998 788888877766666777 5689999999999986211 11122222210
Q ss_pred --CCCceecCCCCHHHHHHHH
Q 014094 277 --RRIPRVPETLPLYEILNEF 295 (431)
Q Consensus 277 --r~v~~V~~~~~l~~aL~~m 295 (431)
..-+.+..+.++.|+=+.|
T Consensus 341 q~dgs~iidGs~~iRdlNr~l 361 (423)
T COG4536 341 QSDGSFIIDGSANVRDLNRAL 361 (423)
T ss_pred cCCCcEEEeCCCcHHHHHHhc
Confidence 1123466777777766555
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.00 E-value=4.1 Score=40.15 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=54.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCCC-----------------cccccccccC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----------------EVPVKSVTIR 277 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~~-----------------~~~V~dim~r 277 (431)
.++.|..|. + ||+++- +|+-|.+ .|+++-+=+..+++..+.++ ...+.+.|..
T Consensus 188 TivfVTHDi--d-EA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~ 257 (309)
T COG1125 188 TIVFVTHDI--D-EALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRR 257 (309)
T ss_pred EEEEEecCH--H-HHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcc
Confidence 345666554 4 677543 6788886 37899999988887644321 1234444433
Q ss_pred CC----ceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 278 RI----PRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 278 ~v----~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
.. -.++....-.+++..+...+...+||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 258 GEPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred cccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 22 1255556667788889999999999999
No 204
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=66.89 E-value=6.8 Score=42.83 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=45.2
Q ss_pred ccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 207 ~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
...|.| ...++++++++. .+...++.-|..++-|+.. ..+++|+++.+|+...
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPK-TNRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecC-CCceeEEEehhhhhhH
Confidence 456665 557899999998 8999999999999999984 4678999999999853
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=65.68 E-value=8.3 Score=40.01 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=42.5
Q ss_pred cccccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 202 ~~~tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
.+.++.+ +. +++.++++++++. +++..+.++++. +||+| + |+++|+|+..+++..
T Consensus 324 ~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 324 AEQEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHA 378 (382)
T ss_pred cccchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHH
Confidence 3344555 32 3567899999998 999988887755 88887 4 899999999999864
No 206
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=62.00 E-value=21 Score=34.77 Aligned_cols=87 Identities=13% Similarity=0.217 Sum_probs=64.8
Q ss_pred ccccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccCCC---------Ccccccccc
Q 014094 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKSVT 275 (431)
Q Consensus 205 tV~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~~~---------~~~~V~dim 275 (431)
.++++.. ..+.||..-.+. ..++.++.+++...-|+|+ -|.+-|.|+..|++...-+ ....+..+
T Consensus 134 ~i~~lLR---Pav~VPESKrvd-~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l- 207 (293)
T COG4535 134 DIKELLR---PAVVVPESKRVD-RLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL- 207 (293)
T ss_pred cHHHhcc---cceecccchhHH-HHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh-
Confidence 3555554 456799999998 7999999999999999984 5789999999999974211 12335554
Q ss_pred cCCCceecCCCCHHHHHHHHHh
Q 014094 276 IRRIPRVPETLPLYEILNEFQK 297 (431)
Q Consensus 276 ~r~v~~V~~~~~l~~aL~~m~~ 297 (431)
.+.-+.|..=+++++--+.|..
T Consensus 208 s~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 208 SRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred cCCceEEEecccHHHHHHHhcC
Confidence 5666778888998887777743
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=47.43 E-value=27 Score=38.28 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.9
Q ss_pred cccccccCcceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhcc
Q 014094 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (431)
Q Consensus 206 V~dIMtpr~~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~ 263 (431)
.+++|-+ .++++....+.+ -+++++++-|.+..-|.+ +|++.|+|+.||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHh
Confidence 4677654 447888888887 899999999999999975 4799999999999874
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=45.99 E-value=27 Score=34.54 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=41.3
Q ss_pred ccccccccccccCcce--EEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 201 LTEKTASDAMTPIAET--FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 201 l~~~tV~dIMtpr~~v--vtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
++..++.+.|.+.... -.+.....-. +++..+...+.+.+||+| ++|+++|.++..+++.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhh
Confidence 3566777877653211 1122233333 677778889999999998 4589999999999874
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=41.69 E-value=33 Score=38.48 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=36.2
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHhCCCeEEEEEe
Q 014094 269 VPVKSVTIRRIPRVPETLPLYEILNEFQKGHSHMAVVVR 307 (431)
Q Consensus 269 ~~V~dim~r~v~~V~~~~~l~~aL~~m~~~~~~~a~VVD 307 (431)
..|+++|.+++.++..+++..|+-+.++....+..|+||
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceecccc
Confidence 468999999999999999999999999888799999998
No 210
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.25 E-value=33 Score=37.01 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhc
Q 014094 228 ELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (431)
Q Consensus 228 ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~ 262 (431)
.+.+.+.+.|-+-++|+++ +++.|+|++||+++
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 4556677888899999974 68999999999986
No 211
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.72 E-value=64 Score=32.98 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=37.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhcCCceeeeeeCCCCcEEEEEEhhhhhccC
Q 014094 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (431)
Q Consensus 215 ~vvtv~~d~tv~~ea~~~m~~~~~sriPV~d~~~~~ivGIV~~kDLl~~~ 264 (431)
++.+++.++++. +.+..+.+.+ ..+||+| ++++++|++....++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvd-e~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVD-EDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEc-CCCcEEEEecHHHHHHHH
Confidence 667889999997 7777666544 5688998 457999999999998653
No 212
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=28.69 E-value=1.1e+02 Score=32.66 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHhHHHH-----cchhhHHHHH------
Q 014094 9 GMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVR-----NQHLLLCTLL------ 77 (431)
Q Consensus 9 ~~~~~~~llvi~~lillsafFs~~E~Al~S~~r~rL~~l~~~g~~~~~~~a~~il~l~~-----~~~~ll~til------ 77 (431)
+...|+.++++++++..=|..=|+-.|++++.+..=+ ++|+.. .+++.-.++- |..+++..-+
T Consensus 254 ~V~p~vAV~lff~~m~~vGMlEGmQiAffavakl~~e---ergs~~---f~~Ktc~LlFkGnG~NLpgfmiGRQltVv~~ 327 (545)
T TIGR00811 254 FIPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKA---ERGDHP---FARKTCELLFKGNGRNLPGFMVGRQMTVTLC 327 (545)
T ss_pred CCCccHHHHHHHHHHHHHHHhhhceeEEEEecCCCHH---HccCCh---hHHHHHHHHhcCCCCCCCceeecceeEEEEE
Confidence 4445777777777777788889999999998875444 334322 2333333331 2222221111
Q ss_pred ---H------------HHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHhhhhHHHHHHHH
Q 014094 78 ---I------------CNAAAME--ALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVW 140 (431)
Q Consensus 78 ---i------------gn~~~~~--~~~~~~~~~~~~~~a~~i~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~~~~ 140 (431)
+ ||++..+ ..+.++.. . ....+++.+.|-|..+--|..+|..... -|+.+++.+
T Consensus 328 fFvV~~iT~L~i~~G~~~nIfGvsD~~Q~ffn~---g----~~gaviTTIlasitwQ~aASafpiaFlN--Np~ty~lL~ 398 (545)
T TIGR00811 328 FFIIARVTTLDIEVGVDDNIFGVSDGIQEFFNL---G----FLGAIITTILASIAWQLVASAFPIAFLS--NPIVYIVLR 398 (545)
T ss_pred EEEeeeccccCCCCCCCCccccCcHHHHHHHhh---c----cHHHHHHHHHHHHHHHHHHHhCcHHHhc--CHHHHHHHH
Confidence 1 2222111 11111111 0 1122233368999999999999966443 344444444
Q ss_pred Hhhh--------hHHHHHHHHHhHhcCCC
Q 014094 141 ICYP--------VAFPISKLLDVLLGHGR 161 (431)
Q Consensus 141 l~~P--------lv~~l~~~~~~llg~~~ 161 (431)
+..- -.|++..+..++.|.+.
T Consensus 399 ~aL~LE~TGlchgawvi~~i~k~vaG~q~ 427 (545)
T TIGR00811 399 IVLLIEATGICAGAWFLGMIHKKVAGFQL 427 (545)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 3322 25666666666667654
No 213
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=27.66 E-value=1.6e+02 Score=29.02 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHh
Q 014094 133 PFVRVLVWICYPVAFPISKLLDVLL 157 (431)
Q Consensus 133 ~~l~~~~~l~~Plv~~l~~~~~~ll 157 (431)
++.+++.=+|+|++|+-+|+.++-.
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888889999998888888754
No 214
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=27.52 E-value=51 Score=22.36 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014094 19 IVFLVMFAGLMSGLTLGLM 37 (431)
Q Consensus 19 i~~lillsafFs~~E~Al~ 37 (431)
+++|+..++.|.+++.|-.
T Consensus 6 ~l~CLA~aavF~~a~va~a 24 (37)
T PF11131_consen 6 FLICLAAAAVFTAAGVANA 24 (37)
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4578999999999987543
No 215
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.62 E-value=97 Score=25.67 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 014094 22 LVMFAGLMSGLTL 34 (431)
Q Consensus 22 lillsafFs~~E~ 34 (431)
++++|+=.|+.|.
T Consensus 16 lLlisSevaa~~~ 28 (95)
T PF07172_consen 16 LLLISSEVAAREL 28 (95)
T ss_pred HHHHHhhhhhHHh
Confidence 3444444444433
No 216
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.72 E-value=3.1e+02 Score=24.11 Aligned_cols=14 Identities=14% Similarity=0.572 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHH
Q 014094 10 MGFIIHIVVIVFLV 23 (431)
Q Consensus 10 ~~~~~~llvi~~li 23 (431)
+++|+.++++++++
T Consensus 21 ~GWwll~~lll~~~ 34 (146)
T PF14316_consen 21 PGWWLLLALLLLLL 34 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555554444433
No 217
>PF15284 PAGK: Phage-encoded virulence factor
Probab=22.54 E-value=1.1e+02 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 014094 16 IVVIVFLVMFAGLMSGLTLGLMSM 39 (431)
Q Consensus 16 llvi~~lillsafFs~~E~Al~S~ 39 (431)
+++.+++++.++.||++-+|--+.
T Consensus 7 ifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhC
Confidence 455667788889999987775433
No 218
>PRK13664 hypothetical protein; Provisional
Probab=21.38 E-value=1.2e+02 Score=22.89 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 014094 11 GFIIHIVVIVFLVMFAGL 28 (431)
Q Consensus 11 ~~~~~llvi~~lillsaf 28 (431)
++|+.++++++-+++|+.
T Consensus 7 yWWilill~lvG~i~N~i 24 (62)
T PRK13664 7 YWWILVLVFLVGVLLNVI 24 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666654
No 219
>COG4129 Predicted membrane protein [Function unknown]
Probab=21.27 E-value=8.4e+02 Score=24.88 Aligned_cols=15 Identities=7% Similarity=-0.161 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCHHHH
Q 014094 30 SGLTLGLMSMSLVDL 44 (431)
Q Consensus 30 s~~E~Al~S~~r~rL 44 (431)
+|.=+|+++++.++-
T Consensus 37 ~A~i~AV~~l~~t~~ 51 (332)
T COG4129 37 FAGISAVLCLSPTIK 51 (332)
T ss_pred HHHHHHhhcccCcch
Confidence 444488988875543
No 220
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=20.71 E-value=1.5e+02 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=12.1
Q ss_pred ccCChhH-HHHHHHHHHHHHHHHHH
Q 014094 6 SCCGMGF-IIHIVVIVFLVMFAGLM 29 (431)
Q Consensus 6 ~~~~~~~-~~~llvi~~lillsafF 29 (431)
|---++. |..++++++.+++|..|
T Consensus 11 ELNRTSLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 11 ELNRTSLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp E--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhHHHHHHHHHHHHHHhhhhh
Confidence 3334443 55555555566666655
No 221
>CHL00038 psbL photosystem II protein L
Probab=20.01 E-value=1.4e+02 Score=20.37 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=11.7
Q ss_pred ChhH-HHHHHHHHHHHHHHHHH
Q 014094 9 GMGF-IIHIVVIVFLVMFAGLM 29 (431)
Q Consensus 9 ~~~~-~~~llvi~~lillsafF 29 (431)
-++. |-.++++++.+++|.+|
T Consensus 15 RTSLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3443 54455555566666655
Done!