BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014097
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 322 PILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTD 381
P+L ESD ++ + +++++ RR +R ++++EV L+ + + G G+W D
Sbjct: 506 PVLALESDALALVPVNE----KPKRTELSQRR-TRRPFSVTEVEALVSAVEEVGTGRWRD 560
Query: 382 IKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQKNKGE 418
+K F ++SHRT +DL+DKW+ L+ AS + Q+ +GE
Sbjct: 561 VKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGE 598
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 410
+R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+DKW+ L+ AS
Sbjct: 505 QRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASI 564
Query: 411 AHQKNKGE 418
+ Q+ +GE
Sbjct: 565 SPQQRRGE 572
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 410
+R+ +R +T++EV L++ + G G+W D+K F + HRT +DL+DKW+ L+ AS
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 589
Query: 411 AHQKNKG 417
A Q+ +G
Sbjct: 590 APQQRRG 596
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 343 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 402
RK K +R+ +R ++++EV L+ + + G G+W D+K F ++ HRT +DL+DKW
Sbjct: 515 RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKW 574
Query: 403 RNLLR-ASYAHQKNKGE 418
+ L+ A + Q+ +GE
Sbjct: 575 KTLVHTARISPQQRRGE 591
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 341 RVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRD 400
+ ++ + ++ +R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+D
Sbjct: 438 KFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKD 497
Query: 401 KWRNLLR-ASYAHQKNKGE 418
KW+ L+ A + Q+ +GE
Sbjct: 498 KWKTLVHTARISPQQRRGE 516
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 410
+R+ +R +T+SEV L+ + + G G+W D+K F+ +HRT +DL+DKW+ L+ A
Sbjct: 311 QRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKI 370
Query: 411 AHQKNKGE 418
+ ++ +GE
Sbjct: 371 SARQRRGE 378
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQKNKG 417
++++EV L+ + + G G+W D+K F + HRT +DL+DKW+ L+ A + Q+ +G
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG 530
Query: 418 E 418
E
Sbjct: 531 E 531
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 355 NQRM-WTLSEVMKLIDGISQFGVGKWTDIKR--LLFSSSSHRTPIDLRDKWRNL 405
NQ++ WT E L+ GI + G GKW +I R HR+ IDL+DKWRNL
Sbjct: 3 NQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 355 NQRM-WTLSEVMKLIDGISQFGVGKWTDIKR--LLFSSSSHRTPIDLRDKWRNL 405
NQ++ WT E L+ G+ + G GKW +I R L S R+ IDL+DKWRNL
Sbjct: 3 NQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNL 56
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDI---KRLLFSSSSHRTPIDLRDKWRNLLRAS 409
RK + WT E L+ G GVG W I +R F++ R+P DL+D++R +L
Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTN---RSPNDLKDRFRTILPED 108
Query: 410 Y 410
Y
Sbjct: 109 Y 109
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 359 WTLSEVMKLIDGISQFGVGKW-TDIKRLLFSSSSH-RTPIDLRDKWRNL-LRASYAHQKN 415
WT E L G+ + G GKW T +K FS + R+ +DL+DKWRN+ + A+ +
Sbjct: 8 WTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSRE 67
Query: 416 KGEVRFLSYFSVP 428
K + FS+P
Sbjct: 68 KSRLAVKRTFSLP 80
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405
R + ++ W E L G+ ++G G W+ I LL ++RT + L+D+WR +
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTM 427
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405
R + ++ W E L G+ ++G G W+ I LL ++RT + L+D+WR +
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTM 427
>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rca-1 PE=3 SV=2
Length = 324
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 347 SKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406
S + D+R+ W+ E +LI + G G W ++ R+L + RTP R++W L
Sbjct: 2 SNMPDQRRGP--WSAGEDQRLIKLVKDLGPGNWVNVARILGT----RTPKQCRERWHQNL 55
Query: 407 RASYAH 412
+ H
Sbjct: 56 KPGLNH 61
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRN 404
WT E ++L+D I Q+G G W DI + + + S+ + +K+ N
Sbjct: 74 WTAREEIRLLDAIEQYGFGNWEDISKHIETKSAEDAKEEYVNKFVN 119
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 339 DDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDL 398
D + R+R + D + + WT E +L D ++ G+GKW+D+ +L+ +RT
Sbjct: 687 DVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLM----ENRTDNQC 742
Query: 399 RDKWRNLLRAS 409
+W+ L ++S
Sbjct: 743 WRRWKQLNKSS 753
>sp|A6MW07|RR3_RHDSA 30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina
GN=rps3 PE=3 SV=1
Length = 218
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 167 VAVGMSDSSITALESECKNDSLEKMVNCELHGTF----KSKCEYQAPDMEKCPSSHDMDR 222
V V +S + I+ +E K+D +E ++ G S + D+ K + ++ R
Sbjct: 43 VKVNLSSAGISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIINKNNQIR 102
Query: 223 FD-----ELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLM 277
+ +D+D N++ I + +KR+ R+ T++ I+
Sbjct: 103 INVTELKNVDADANLIAEFIAQQLEKRIA----------FRRATRQAIQ----------- 141
Query: 278 RGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDS 337
R Q + +K +G G+++A W+R GR+ P+ +D D + ++
Sbjct: 142 RAQRANVQGIK------VQVSGRLNGAEIARSEWVREGRV----PLQTLRADIDYATKEA 191
Query: 338 D 338
D
Sbjct: 192 D 192
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 359 WTLSEVMKLIDGISQFGVGKW-TDIKRLLFSSS-SHRTPIDLRDKWRNL 405
WT E L G+ + G GKW T + ++S+ R+ +DL+DKWRN+
Sbjct: 8 WTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNI 56
>sp|P01104|MYB_AVIMB Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB
PE=1 SV=2
Length = 382
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 339 DDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDL 398
D + + R K+ + N+ WT E ++I+ + ++G +W+DI + L R
Sbjct: 4 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG----RIGKQC 59
Query: 399 RDKWRNLL 406
R++W N L
Sbjct: 60 RERWHNHL 67
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKR-----LLFSSSSHRTPIDLRDKWRNL 405
++ WT E L G+ + G GKW I L+ S S+ +DL+DKWRN+
Sbjct: 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSN---VDLKDKWRNI 56
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDI-KRLLFSSSSHRTPIDLRDKWRNL 405
WT+ E + DG+ ++G G+W I ++ F +RT + ++D++R +
Sbjct: 668 WTVQESEWIKDGVRKYGEGRWKTISEKYPF---QNRTSVQIKDRYRTM 712
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDI-KRLLFSSSSHRTPIDLRDKWRNL 405
WT+ E + DG+ ++G G W I K F +RT + ++D+WR +
Sbjct: 491 WTIEESEWVKDGVRKYGEGNWAAISKSYPF---VNRTAVMIKDRWRTM 535
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407
R+ ++ W E L G+ ++G G W I L ++RT + L+D+WR + R
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKI--LSHYKFNNRTSVMLKDRWRTMKR 416
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus
GN=Snapc4 PE=2 SV=2
Length = 1333
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGE 418
W E +LI I ++GVG W I S HR+ KW+ L R Q+ +G+
Sbjct: 456 WNAKEEQQLIQLIEKYGVGHWARIA----SELPHRSGSQCLSKWKILARKKQHLQRKRGQ 511
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 402
WT E L+D I Q+G G W D+ + +S RTP ++ D +
Sbjct: 70 WTSREEQSLLDAIEQYGFGNWEDMAAHVGAS---RTPQEVMDHY 110
>sp|B3CMH5|RUVB_WOLPP Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
pipientis subsp. Culex pipiens (strain wPip) GN=ruvB
PE=3 SV=1
Length = 329
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNLNIRPEQLDD-FVGQ-KDLIQNLKVFINAAQTRAEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDI 131
+DF LDI
Sbjct: 126 MEDFCLDI 133
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 289 DKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDSDDDRVRKRKSK 348
+K+PKV +S E+W+ +D++F + D +
Sbjct: 401 EKNPKVPKGKWNSSNGVEEKETWV---------------EEDELFQVQAAPDE--DSTTN 443
Query: 349 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDI-KRLLFSSSSHRTPIDLRDKWRNLLR 407
I ++K WT+ E + G+ ++G G W I K F +RT + ++D+WR + R
Sbjct: 444 ITKKQK----WTVEESEWVKAGVQKYGEGNWAAISKNYPF---VNRTAVMIKDRWRTMKR 496
>sp|P61539|RUVB_WOLPM Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
pipientis wMel GN=ruvB PE=3 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNINIRPEQLDD-FVGQ-KDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDI 131
+DF LDI
Sbjct: 126 MEDFCLDI 133
>sp|C0R4X2|RUVB_WOLWR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia sp.
subsp. Drosophila simulans (strain wRi) GN=ruvB PE=3
SV=1
Length = 324
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ FV KD + + + ++D VL +G LGK++
Sbjct: 12 EDVRNINIRPEQLDD-FVGQ-KDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L + G+ L L+ D+ +D+ H N L T
Sbjct: 70 IVSKELRVSFRATSGPL--LSKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDIEFTE----KVAKFDCGP 144
+DF LDI E + + D P
Sbjct: 126 MEDFCLDILVGEGPSTRTLRIDLPP 150
>sp|Q5GT33|RUVB_WOLTR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=ruvB PE=3 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 9 ENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMD 68
E+VRN+ + ++++ F KD + + K ++D VL G LGK++
Sbjct: 12 EDVRNLNIRPEQLDDFF--GQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQ 69
Query: 69 GFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAAND-----LSTV 123
S E FR G L G+ L L+ D+ +D+ H N L T
Sbjct: 70 IISKELRVSFRATSGPL--LNKAGDLAAVLTTLNA--KDVLFIDEIHRLNRSIEEVLYTA 125
Query: 124 CDDFLLDI 131
+DF LD+
Sbjct: 126 MEDFCLDL 133
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 402
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPTEVMEHY 110
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 402
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHY 110
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 402
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHY 110
>sp|Q54X08|MYBV_DICDI Myb-like protein V OS=Dictyostelium discoideum GN=mybV PE=4 SV=2
Length = 803
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKG 417
+WT E LI + G +W IK +S+S R P L+DK R+ LR Y KN
Sbjct: 333 LWTDEECRSLIKAVMIIG-HRWIKIKEDYYSTS-KRKPSQLKDKMRS-LRKRYGDIKNIA 389
Query: 418 EVRFLSYFS 426
++YF+
Sbjct: 390 ----IAYFT 394
>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407
WT+ E + LI+ IS G G W I R S+ RT R +W N LR
Sbjct: 18 WTMEEDLILINFISNHGEGVWNTIAR---SAGLKRTGKSCRLRWLNYLR 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,807,141
Number of Sequences: 539616
Number of extensions: 6933337
Number of successful extensions: 15943
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 15836
Number of HSP's gapped (non-prelim): 149
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)