Query 014097
Match_columns 430
No_of_seqs 125 out of 397
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 01:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 1.2E-10 2.6E-15 84.9 4.8 48 356-406 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 1.3E-08 2.9E-13 70.1 5.4 48 356-407 1-48 (49)
3 PLN03212 Transcription repress 98.7 2.7E-08 6E-13 96.6 6.9 67 343-412 12-78 (249)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 4.4E-08 9.6E-13 66.8 5.2 45 358-406 1-45 (45)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.5 1.4E-07 3E-12 70.7 4.2 44 359-407 1-44 (60)
6 PLN03091 hypothetical protein; 98.4 3E-07 6.6E-12 95.3 6.5 57 353-412 11-67 (459)
7 KOG0048 Transcription factor, 98.2 2.5E-06 5.5E-11 80.7 5.2 56 356-414 9-64 (238)
8 PLN03212 Transcription repress 97.9 9.9E-06 2.1E-10 79.1 5.0 50 355-409 77-126 (249)
9 PLN03091 hypothetical protein; 97.8 2.2E-05 4.7E-10 81.9 5.5 48 356-408 67-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.8 5E-05 1.1E-09 59.1 5.7 47 354-403 1-51 (57)
11 PF13837 Myb_DNA-bind_4: Myb/S 97.3 0.00018 4E-09 56.9 2.9 54 356-409 1-67 (90)
12 KOG0457 Histone acetyltransfer 97.3 0.00029 6.3E-09 73.4 4.9 49 357-409 73-121 (438)
13 KOG0048 Transcription factor, 96.9 0.0012 2.6E-08 62.7 5.1 49 355-408 61-109 (238)
14 KOG0051 RNA polymerase I termi 96.9 0.0011 2.4E-08 71.6 5.0 50 355-410 383-432 (607)
15 KOG0049 Transcription factor, 96.7 0.0012 2.7E-08 72.1 3.3 53 352-408 408-460 (939)
16 PF13873 Myb_DNA-bind_5: Myb/S 96.5 0.0057 1.2E-07 48.1 5.2 54 356-409 2-72 (78)
17 KOG0049 Transcription factor, 96.4 0.0035 7.6E-08 68.8 4.7 50 355-408 359-408 (939)
18 PF13325 MCRS_N: N-terminal re 96.4 0.0033 7.1E-08 60.0 3.8 62 353-414 70-134 (199)
19 PF09111 SLIDE: SLIDE; InterP 95.8 0.0079 1.7E-07 53.0 3.1 56 354-409 47-113 (118)
20 COG5114 Histone acetyltransfer 93.6 0.074 1.6E-06 54.9 4.1 46 358-407 65-110 (432)
21 KOG1279 Chromatin remodeling f 93.5 0.086 1.9E-06 56.5 4.6 50 352-406 249-298 (506)
22 KOG0050 mRNA splicing protein 93.2 0.045 9.7E-07 59.0 1.8 66 356-425 7-74 (617)
23 PLN03142 Probable chromatin-re 92.7 0.15 3.3E-06 58.6 5.2 56 354-409 924-987 (1033)
24 KOG4282 Transcription factor G 92.4 0.21 4.5E-06 49.5 5.1 54 356-409 54-116 (345)
25 COG5147 REB1 Myb superfamily p 92.1 0.06 1.3E-06 57.7 1.1 55 354-414 289-343 (512)
26 COG5259 RSC8 RSC chromatin rem 91.5 0.2 4.4E-06 53.6 4.2 46 355-405 278-323 (531)
27 KOG2656 DNA methyltransferase 87.3 0.33 7.1E-06 51.1 1.9 52 357-409 131-188 (445)
28 PF12776 Myb_DNA-bind_3: Myb/S 87.3 0.81 1.7E-05 36.7 3.7 51 358-408 1-64 (96)
29 COG5147 REB1 Myb superfamily p 84.5 0.75 1.6E-05 49.6 3.0 56 352-411 16-71 (512)
30 KOG0051 RNA polymerase I termi 82.4 1.9 4.1E-05 47.5 5.0 55 354-412 434-514 (607)
31 PF04504 DUF573: Protein of un 79.9 3.8 8.2E-05 35.0 5.0 54 355-408 3-64 (98)
32 PF08074 CHDCT2: CHDCT2 (NUC03 78.5 1.4 3.1E-05 41.8 2.2 47 356-402 3-58 (173)
33 PF08914 Myb_DNA-bind_2: Rap1 77.0 4.8 0.0001 32.3 4.5 50 356-408 2-59 (65)
34 KOG0384 Chromodomain-helicase 69.5 2.4 5.2E-05 50.2 1.6 54 355-408 1132-1193(1373)
35 COG5118 BDP1 Transcription ini 63.4 12 0.00026 40.1 5.0 51 352-407 361-411 (507)
36 PF09420 Nop16: Ribosome bioge 51.0 31 0.00067 31.5 5.0 52 354-406 112-163 (164)
37 KOG0050 mRNA splicing protein 48.7 18 0.0004 39.9 3.7 46 356-407 59-104 (617)
38 smart00595 MADF subfamily of S 33.7 36 0.00078 27.0 2.4 25 378-407 29-53 (89)
39 PF00984 UDPG_MGDP_dh: UDP-glu 26.8 17 0.00037 30.8 -0.6 45 114-165 19-63 (96)
40 PLN03162 golden-2 like transcr 25.7 1.5E+02 0.0032 32.2 5.8 54 352-407 233-291 (526)
41 KOG4468 Polycomb-group transcr 23.7 1.1E+02 0.0024 34.8 4.6 28 356-384 88-115 (782)
42 PF01527 HTH_Tnp_1: Transposas 23.4 70 0.0015 24.4 2.3 48 353-407 1-48 (76)
43 PF10545 MADF_DNA_bdg: Alcohol 20.8 84 0.0018 24.0 2.3 27 378-407 28-54 (85)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.09 E-value=1.2e-10 Score=84.89 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
|.+||.+|++.|+++|.+||.++|..|...++ .+||..||+.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 56899999999999999999988999999874 4999999999999874
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.78 E-value=1.3e-08 Score=70.11 Aligned_cols=48 Identities=33% Similarity=0.666 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+..||.+|++.|+.+|.+||.++|..|...+ .+||..+|+++|+++.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~----~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL----PGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 3679999999999999999977999999876 49999999999999875
No 3
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.70 E-value=2.7e-08 Score=96.56 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=54.4
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccc
Q 014097 343 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 412 (430)
Q Consensus 343 pkr~k~~~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~ 412 (430)
++++.+--|.--++.+||+||++.|+..|++||..+|..|..... .+||+.||++||.|.+++....
T Consensus 12 ~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I~k 78 (249)
T PLN03212 12 KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSVKR 78 (249)
T ss_pred CCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhccc
Confidence 344443334445578899999999999999999999999987642 4899999999999999887654
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.66 E-value=4.4e-08 Score=66.82 Aligned_cols=45 Identities=38% Similarity=0.801 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 358 kWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
+||.+|++.|+.++.+||.++|..|.... .+||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~----~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL----PGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc----CCCCHHHHHHHHHHhC
Confidence 59999999999999999988999999876 4699999999999864
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.49 E-value=1.4e-07 Score=70.75 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 359 WT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
||.+|++.|+.+|.+||. +|+.|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999999875 37999999999999554
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.44 E-value=3e-07 Score=95.34 Aligned_cols=57 Identities=25% Similarity=0.504 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 412 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~ 412 (430)
+-++++||.||++.|++.|++||.++|..|..... .+||+.||++||.|.+......
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~IkK 67 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPDLKR 67 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCcccC
Confidence 44567899999999999999999999999997643 4899999999999999877554
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.15 E-value=2.5e-06 Score=80.65 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccccc
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 414 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~ 414 (430)
+.+||.||++.|++-|++||.|+|..|.+.... +|++.+|+-||-|.+++.+..-.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP~ikrg~ 64 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRPDLKRGN 64 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCCCccCCC
Confidence 699999999999999999999999999998742 99999999999999999877533
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.94 E-value=9.9e-06 Score=79.08 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
++.+||.||++.|++.+.+||. +|+.|...+ ++||..++|.+|.+++|..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 4578999999999999999996 999999855 6999999999998877654
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.83 E-value=2.2e-05 Score=81.90 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
+.+||.||++.|++.+++||. +|++|...+ .+||..++|.+|+.++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999865 699999999999988765
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.79 E-value=5e-05 Score=59.11 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhcCCCCCC-CchhHHHHHH
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHR-TPIDLRDKWR 403 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnW---kkIl~~~f~vf~~R-TsVDLKDKWR 403 (430)
|+|..||+||...+++||+.||.|+| +.|+..+. ..| |..+++....
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHHHH
Confidence 46889999999999999999999999 99998763 245 8999886543
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.30 E-value=0.00018 Score=56.87 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 356 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 356 RrkWT~EEveaLveGVeK------yGv-----G--nWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
|..||.+|+.+|++.+.. ++. + -|..|.......=..||+.||++||.||.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999887 221 1 59999997521113899999999999999744
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00029 Score=73.40 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
--||.+||-.|++|++.||.|||..|.+... .||.-++|+.|.++.-.+
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhcC
Confidence 4599999999999999999999999999874 799999999998887533
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.93 E-value=0.0012 Score=62.74 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
+|..||.||++.|+++..+||. +|+.|...+ ++||--.+|.-|..-+|.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~L----PGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRL----PGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhC----CCcCHHHHHHHHHHHHHH
Confidence 3778999999999999999998 899999976 699999999999666543
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.89 E-value=0.0011 Score=71.61 Aligned_cols=50 Identities=30% Similarity=0.658 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
++.+||++|++.|...|.++|. .|+.|-+.. +|.+.+|+|+||+..+.+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~ 432 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGS 432 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhcccc
Confidence 6788999999999999999996 999999976 8999999999999999885
No 15
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.65 E-value=0.0012 Score=72.11 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=45.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++-+..+||..|++.|+..|++||+|+|.+|...+ .+||..|+..+-+.+...
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHHH
Confidence 56678889999999999999999999999999866 589998888776655543
No 16
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.49 E-value=0.0057 Score=48.07 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhcCCC-CCCCchhHHHHHHHhhhcc
Q 014097 356 QRMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKy-----Gv-----------GnWkkIl~~~f~vf-~~RTsVDLKDKWRNL~K~~ 409 (430)
..+||.+|.+.|++.|++| |. .-|..|...+-... ..||..+||.+|.||....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999997 31 27999999874332 5899999999999998644
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.40 E-value=0.0035 Score=68.78 Aligned_cols=50 Identities=22% Similarity=0.574 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||.+|+..|+.+|.+||.--|.+|+..+ ++|+-.||++||-|.+-.
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV----PNRSDSQCRERYTNVLNR 408 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc----CCccHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999875 699999999999887643
No 18
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.36 E-value=0.0033 Score=60.01 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCC-CCCCchhHHHHHHHhhhccccccc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQK 414 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyG--vGnWkkIl~~~f~vf-~~RTsVDLKDKWRNL~K~~~~~~~ 414 (430)
-..+-+||.+|++.|........ ...+.+|+..+..+| ..||+.+|.+.||.|.++.-++-+
T Consensus 70 iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ 134 (199)
T PF13325_consen 70 IQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQ 134 (199)
T ss_pred ccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcc
Confidence 44678999999999999877664 468999999998888 779999999999999887755543
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.78 E-value=0.0079 Score=52.98 Aligned_cols=56 Identities=23% Similarity=0.483 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCCchhHHHHHHHhhhcc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGv---GnWkkIl~~~-------f~v-f~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.+.||.+|+..|+.-+.+||. |.|..|+... |+. |..||+.+|..|-..|+++-
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 34678999999999999999999 9999999873 343 49999999999999998754
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.62 E-value=0.074 Score=54.89 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 358 kWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
-|+..|+-.|+++.+..|.|||..|.+... .|+.-++|+.|-.|.-
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHh
Confidence 499999999999999999999999998763 7999999999977664
No 21
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=93.53 E-value=0.086 Score=56.47 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=44.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
.-..+..||.+|.-.|++||++||- .|.+|.... ..||.-||-.|+..|=
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hV----g~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHV----GTKSQEQCILKFLRLP 298 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhcc----CCCCHHHHHHHHHhcC
Confidence 3456788999999999999999997 999999976 4899999999998764
No 22
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=0.045 Score=59.01 Aligned_cols=66 Identities=20% Similarity=0.449 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccc--cccccccccccee
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH--QKNKGEVRFLSYF 425 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~--~~sk~e~e~~~~f 425 (430)
-.-|+..|++.|..+|.+||.-.|+.|...+ +..|..||+-+|--.+-.++.. |...-+..++|+|
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhla 74 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLA 74 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHH
Confidence 4569999999999999999999999999987 5789999999999887766544 4444445555554
No 23
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.70 E-value=0.15 Score=58.58 Aligned_cols=56 Identities=20% Similarity=0.422 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------cCC-CCCCCchhHHHHHHHhhhcc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~-------f~v-f~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+..|+.|-..|++.-
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999998763 344 49999999999998888754
No 24
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.36 E-value=0.21 Score=49.55 Aligned_cols=54 Identities=24% Similarity=0.451 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCC-----hHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 356 QRMWTLSEVMKLIDGISQ----FGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 356 RrkWT~EEveaLveGVeK----yGvGn-----WkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
...|+.+|+.+||+...+ +..|+ |..|.......=..||+.+||.||.||.|.-
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 688999999999998775 44565 9999985322125899999999999999754
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=92.12 E-value=0.06 Score=57.71 Aligned_cols=55 Identities=31% Similarity=0.646 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccccc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 414 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~ 414 (430)
+.+..||.+|+..|..-+.++|. .|+.|-... +|-+.+|.|+||+..+.+..+.+
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g~t~~~ 343 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCGDTLKR 343 (512)
T ss_pred hhhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhccccCccCC
Confidence 35678999999999999999995 999999865 89999999999999998755554
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=91.51 E-value=0.2 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHh
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL 405 (430)
....||.+|.-.|++||+.||. .|.+|.+.. .++|.-||-=|+-+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HV----gtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHV----GTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHh----CCCCHHHHHHHHHcC
Confidence 3458999999999999999997 999999987 489999998887554
No 27
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=87.32 E-value=0.33 Score=51.13 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcC-CC-CCCCchhHHHHH----HHhhhcc
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFS-SS-SHRTPIDLRDKW----RNLLRAS 409 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~f~-vf-~~RTsVDLKDKW----RNL~K~~ 409 (430)
..||.+|.+.|.+..++|-. +|-.|.+.|.. .| ..||--|||||| |++.++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 56999999999999999998 99999999722 24 459999999998 6666654
No 28
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.26 E-value=0.81 Score=36.71 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhc-------CCC-----ChHHHHHHhcCCC-CCCCchhHHHHHHHhhhc
Q 014097 358 MWTLSEVMKLIDGISQF-------GVG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 358 kWT~EEveaLveGVeKy-------GvG-----nWkkIl~~~f~vf-~~RTsVDLKDKWRNL~K~ 408 (430)
+||+++++.|++.+... +.+ .|..|...+...+ ...|..+||.||+.|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999988643 222 4888888763332 466788999999888764
No 29
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=84.48 E-value=0.75 Score=49.61 Aligned_cols=56 Identities=20% Similarity=0.452 Sum_probs=46.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
..++...|+..|++.|..+|++||.-+|+.|...|. .||+-|++-+|-+-......
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~lnp~lk 71 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLNPQLK 71 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhchhcc
Confidence 445566999999999999999999999999998873 59999999999655544433
No 30
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=82.41 E-value=1.9 Score=47.53 Aligned_cols=55 Identities=29% Similarity=0.553 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh-
Q 014097 354 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 407 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVe-------Ky------------------GvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K- 407 (430)
+++.+||-+|++.|++.|+ .| -.-+|..|-... ..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 5788999999999999996 33 123899999854 69999999999988886
Q ss_pred ccccc
Q 014097 408 ASYAH 412 (430)
Q Consensus 408 ~~~~~ 412 (430)
+.++.
T Consensus 510 ~s~n~ 514 (607)
T KOG0051|consen 510 PSFNK 514 (607)
T ss_pred HHhhc
Confidence 44443
No 31
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=79.94 E-value=3.8 Score=34.96 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCC---ChHHHHHHhcCCC-CCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQF----GVG---KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKy----GvG---nWkkIl~~~f~vf-~~RTsVDLKDKWRNL~K~ 408 (430)
-.|.||.++|-.|++|+-.| |.. .|..........+ ..=|..||.+|-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999877 754 4544444322211 234778999999998863
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.50 E-value=1.4 Score=41.76 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCC--CCCCc------hhHHHHH
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRTP------IDLRDKW 402 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~-f~vf--~~RTs------VDLKDKW 402 (430)
..-|-..-+-.|+.||.+||-|+|.+|.++- |.+. +=++. .++|.|+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 4558888888999999999999999999973 3332 22232 4788776
No 33
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=76.99 E-value=4.8 Score=32.34 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CC--ChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 356 QRMWTLSEVMKLIDGISQF---G---VG--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKy---G---vG--nWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
|.++|.+|+.+|++-|.++ | .| =|+.+..... ..+|-.-++|+|+.-++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 5689999999999999654 3 23 3666665542 488999999999766554
No 34
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=69.54 E-value=2.4 Score=50.16 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcC-----CC---CCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFS-----SS---SHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~-----vf---~~RTsVDLKDKWRNL~K~ 408 (430)
.---|..+++..|+-||-+||.|+|..|+.+-.- +| ..=+.++|.-+-.-|++.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~ 1193 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSL 1193 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHH
Confidence 4567999999999999999999999999987421 12 233456676665555543
No 35
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=63.44 E-value=12 Score=40.08 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=44.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+++..-+||.+|.+.+.+++..+|. -++.|...| ++|...|+|-||.+-.|
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lf----P~R~RkqIKaKfi~Eek 411 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISSLF----PNRERKQIKAKFIKEEK 411 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhc----CchhHHHHHHHHHHHhh
Confidence 4667889999999999999999998 899998866 58999999999976655
No 36
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=51.03 E-value=31 Score=31.52 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
++.++=|..|.+.+...|+|||. .+..+..+---..--.|..||+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56778999999999999999996 89988887543345789999999887654
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=48.75 E-value=18 Score=39.88 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+--|+.+|++.|+....-+-. .|..|.... +||+.+|-.+|-+++-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 456999999999999888866 999999876 8999999999988874
No 38
>smart00595 MADF subfamily of SANT domain.
Probab=33.68 E-value=36 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=20.5
Q ss_pred ChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 378 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 378 nWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
-|..|..... -|..+|+.||++|..
T Consensus 29 aW~~Ia~~l~-----~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELG-----LSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHC-----cCHHHHHHHHHHHHH
Confidence 5899988773 399999999999853
No 39
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=26.79 E-value=17 Score=30.81 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=29.1
Q ss_pred ccccccccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCC
Q 014097 114 FHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGS 165 (430)
Q Consensus 114 ~~a~~~~s~~c~~~~~d~~~a~~v~~l~~gp~~~s~l~n~ssES~Spg~sGs 165 (430)
|--.|.|+.+|+.+ ++++.+.+.-+...|..+.++- -++|||+|+
T Consensus 19 iaf~Nel~~lce~~--giD~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~ 63 (96)
T PF00984_consen 19 IAFANELARLCEKL--GIDVYEVIEAANTDPRIGPHYL-----RPGPGFGGS 63 (96)
T ss_dssp HHHHHHHHHHHHHH--TSBHHHHHHHHHTSTTTTSSS------S-SSS--SS
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHccCcccccccC-----CCCCCCCCc
Confidence 34468999999997 5666666667777788763322 456788988
No 40
>PLN03162 golden-2 like transcription factor; Provisional
Probab=25.75 E-value=1.5e+02 Score=32.18 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCCchhHH---HHHHHhhh
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 407 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvG--nWkkIl~~~f~vf~~RTsVDLK---DKWRNL~K 407 (430)
++|.|..||.+=-+.++++|++.|.- .-+.|++... ..+=|.-++| .|||...|
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999942 5677887642 3566666666 56777765
No 41
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=23.72 E-value=1.1e+02 Score=34.84 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHH
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKR 384 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~ 384 (430)
++.||-.|++++.+|++.||. ....|.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~Vin 115 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVIN 115 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHH
Confidence 778999999999999999998 7777744
No 42
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=23.42 E-value=70 Score=24.44 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+++++.||+++-..++..+..-|. ....|...+.- +...--+|+.-.+
T Consensus 1 m~~r~~ys~e~K~~~v~~~~~~g~-sv~~va~~~gi------~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 1 MRKRRRYSPEFKLQAVREYLESGE-SVSEVAREYGI------SPSTLYNWRKQYR 48 (76)
T ss_dssp --SS----HHHHHHHHHHHHHHHC-HHHHHHHHHTS-------HHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC-ceEeeeccccc------ccccccHHHHHHh
Confidence 467889999999999999966564 77777777631 3444556766665
No 43
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=20.77 E-value=84 Score=23.98 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=19.4
Q ss_pred ChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 378 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 378 nWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
-|..|...+. ..-+..+|+.+|++|..
T Consensus 28 aw~~Ia~~l~---~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELG---KEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHc---cchhHHHHHHHHHHHHH
Confidence 5888887763 13457789999988875
Done!