Query 014097
Match_columns 430
No_of_seqs 125 out of 397
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 05:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.8 3.2E-19 1.1E-23 150.9 6.4 71 350-420 7-77 (105)
2 2roh_A RTBP1, telomere binding 99.8 5.8E-19 2E-23 152.9 7.3 68 350-417 25-92 (122)
3 2juh_A Telomere binding protei 99.7 1.3E-18 4.3E-23 150.7 6.9 74 344-417 5-78 (121)
4 2ckx_A NGTRF1, telomere bindin 99.7 5.7E-18 1.9E-22 137.7 6.5 63 357-419 1-63 (83)
5 1x58_A Hypothetical protein 49 99.7 1.4E-17 4.7E-22 130.4 6.4 55 353-409 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 2.2E-16 7.4E-21 122.1 6.5 55 354-410 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 2.2E-14 7.5E-19 110.7 7.1 61 351-413 5-65 (69)
8 1w0t_A Telomeric repeat bindin 99.5 4.8E-14 1.6E-18 103.9 6.1 52 355-408 1-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 1.1E-11 3.8E-16 90.4 5.7 50 355-408 2-51 (52)
10 2d9a_A B-MYB, MYB-related prot 99.2 3.5E-11 1.2E-15 90.2 6.5 54 353-410 5-58 (60)
11 1gvd_A MYB proto-oncogene prot 99.2 3.6E-11 1.2E-15 87.9 5.5 50 355-408 2-51 (52)
12 2dim_A Cell division cycle 5-l 99.1 1.3E-10 4.5E-15 89.6 7.3 55 354-412 7-61 (70)
13 1x41_A Transcriptional adaptor 99.1 1.1E-10 3.8E-15 88.1 6.1 51 355-409 7-57 (60)
14 2elk_A SPCC24B10.08C protein; 99.1 2E-10 6.8E-15 86.5 6.0 48 356-406 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 99.0 6.1E-10 2.1E-14 89.4 6.1 53 348-405 10-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.9 1.8E-09 6.2E-14 83.9 6.5 54 354-412 7-60 (72)
17 2din_A Cell division cycle 5-l 98.8 3.1E-09 1.1E-13 81.1 5.3 51 355-411 8-58 (66)
18 1gv2_A C-MYB, MYB proto-oncoge 98.8 4E-09 1.4E-13 85.9 5.6 52 355-410 3-54 (105)
19 2yum_A ZZZ3 protein, zinc fing 98.8 5.3E-09 1.8E-13 81.4 5.5 51 354-408 6-61 (75)
20 2k9n_A MYB24; R2R3 domain, DNA 98.8 7.3E-09 2.5E-13 85.3 5.9 52 356-411 1-52 (107)
21 3osg_A MYB21; transcription-DN 98.8 7.7E-09 2.6E-13 87.6 6.2 54 352-410 7-60 (126)
22 2llk_A Cyclin-D-binding MYB-li 98.7 1E-08 3.6E-13 81.7 5.3 50 353-408 20-69 (73)
23 1h8a_C AMV V-MYB, MYB transfor 98.7 1.3E-08 4.5E-13 85.8 6.2 52 355-410 26-77 (128)
24 3osg_A MYB21; transcription-DN 98.7 2.1E-08 7E-13 84.9 5.4 56 355-415 61-116 (126)
25 3zqc_A MYB3; transcription-DNA 98.7 1.5E-08 5.2E-13 86.1 4.6 52 356-411 2-53 (131)
26 1gv2_A C-MYB, MYB proto-oncoge 98.6 3E-08 1E-12 80.8 5.2 49 355-408 55-103 (105)
27 2cqr_A RSGI RUH-043, DNAJ homo 98.6 2.7E-08 9.3E-13 79.2 4.2 53 352-408 14-69 (73)
28 2k9n_A MYB24; R2R3 domain, DNA 98.6 5.1E-08 1.8E-12 80.3 5.9 50 355-409 52-101 (107)
29 3zqc_A MYB3; transcription-DNA 98.5 8.5E-08 2.9E-12 81.5 5.8 54 355-413 53-106 (131)
30 1h8a_C AMV V-MYB, MYB transfor 98.5 9.4E-08 3.2E-12 80.6 5.0 49 355-408 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.5 1.4E-07 4.7E-12 82.1 5.9 52 355-410 57-108 (159)
32 1h89_C C-MYB, MYB proto-oncoge 98.5 3E-08 1E-12 86.3 1.3 52 355-410 5-56 (159)
33 2ltp_A Nuclear receptor corepr 97.8 3.1E-08 1.1E-12 80.4 0.0 50 355-409 15-64 (89)
34 2cjj_A Radialis; plant develop 98.2 1.4E-06 4.7E-11 72.3 5.4 48 356-407 8-58 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.1 6.9E-06 2.4E-10 62.4 6.7 54 350-408 6-59 (61)
36 1ign_A Protein (RAP1); RAP1,ye 97.9 6E-06 2.1E-10 79.1 4.3 53 355-411 7-64 (246)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.8 3.5E-05 1.2E-09 61.0 6.3 50 355-409 7-59 (72)
38 3hm5_A DNA methyltransferase 1 97.8 2.9E-05 9.8E-10 64.9 5.8 51 357-408 31-82 (93)
39 2ebi_A DNA binding protein GT- 97.4 5.6E-05 1.9E-09 60.1 1.8 56 354-409 2-66 (86)
40 2iw5_B Protein corest, REST co 97.3 0.00029 9.8E-09 67.3 6.2 52 352-408 129-180 (235)
41 1wgx_A KIAA1903 protein; MYB D 97.2 0.00047 1.6E-08 55.3 5.7 51 356-410 8-61 (73)
42 4b4c_A Chromodomain-helicase-D 97.2 0.00038 1.3E-08 62.3 5.5 53 356-408 134-196 (211)
43 4iej_A DNA methyltransferase 1 97.0 0.00084 2.9E-08 56.3 5.7 50 357-407 31-81 (93)
44 2yqk_A Arginine-glutamic acid 97.0 0.0023 7.7E-08 49.0 7.0 54 353-410 6-59 (63)
45 2crg_A Metastasis associated p 96.8 0.003 1E-07 49.4 7.0 56 352-411 4-59 (70)
46 1fex_A TRF2-interacting telome 96.4 0.0029 1E-07 48.2 4.3 49 356-407 2-58 (59)
47 2xb0_X Chromo domain-containin 96.3 0.0019 6.5E-08 62.3 3.5 30 357-386 169-198 (270)
48 1ofc_X ISWI protein; nuclear p 96.3 0.0023 8E-08 62.7 3.7 54 356-409 212-276 (304)
49 2xag_B REST corepressor 1; ami 95.6 0.013 4.4E-07 60.8 6.0 50 353-407 377-426 (482)
50 2y9y_A Imitation switch protei 95.4 0.011 3.9E-07 59.5 4.3 54 356-409 228-292 (374)
51 1irz_A ARR10-B; helix-turn-hel 95.0 0.058 2E-06 42.4 6.6 54 352-407 3-61 (64)
52 4b4c_A Chromodomain-helicase-D 94.8 0.031 1.1E-06 49.9 5.2 52 353-406 4-57 (211)
53 4eef_G F-HB80.4, designed hema 93.9 0.014 4.7E-07 47.4 0.7 44 355-402 19-65 (74)
54 4a69_C Nuclear receptor corepr 93.4 0.054 1.9E-06 44.5 3.5 52 351-407 38-89 (94)
55 1ug2_A 2610100B20RIK gene prod 90.4 0.65 2.2E-05 39.2 6.7 58 350-411 27-86 (95)
56 2xb0_X Chromo domain-containin 84.4 1.4 4.9E-05 42.4 6.0 51 355-407 2-54 (270)
57 1ign_A Protein (RAP1); RAP1,ye 82.9 1.4 4.7E-05 42.6 5.1 29 377-409 172-200 (246)
58 2lr8_A CAsp8-associated protei 83.5 0.24 8.3E-06 39.8 0.0 51 354-409 12-64 (70)
59 3ukw_C Bimax1 peptide; arm rep 57.2 6.5 0.00022 26.4 2.2 16 312-331 2-17 (28)
60 1ofc_X ISWI protein; nuclear p 50.9 13 0.00045 36.5 4.2 48 355-406 109-156 (304)
61 3ukx_C Bimax2 peptide; arm rep 50.3 7.9 0.00027 26.0 1.8 11 324-334 10-20 (28)
62 2xag_B REST corepressor 1; ami 48.8 3.7 0.00012 42.8 0.0 44 356-404 189-232 (482)
63 2q2k_A Hypothetical protein; p 25.3 11 0.00037 29.7 -0.8 20 251-270 49-68 (70)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.77 E-value=3.2e-19 Score=150.93 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=62.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccccccccccc
Q 014097 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVR 420 (430)
Q Consensus 350 ~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~sk~e~e 420 (430)
.++|+++++||.||+++|++||++||.|+|+.|+..+|..|.+||.+|||||||||+|...+.+..++...
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~ 77 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEP 77 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCC
Confidence 34688899999999999999999999999999999988888999999999999999998877666555443
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.76 E-value=5.8e-19 Score=152.93 Aligned_cols=68 Identities=31% Similarity=0.655 Sum_probs=60.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccccccc
Q 014097 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKG 417 (430)
Q Consensus 350 ~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~sk~ 417 (430)
.++||++++||.||+++|++||++||.|+|+.|+..+|..|.+||++|||||||||+|...+.+..++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr 92 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRR 92 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccC
Confidence 45788899999999999999999999999999999988888999999999999999987766555443
No 3
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=1.3e-18 Score=150.67 Aligned_cols=74 Identities=30% Similarity=0.645 Sum_probs=63.1
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccccccc
Q 014097 344 KRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKG 417 (430)
Q Consensus 344 kr~k~~~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~sk~ 417 (430)
|.++...+.|+++++||.||+++|++||++||.|+|+.|+..++.+|.+||.+|||||||||++...+++..++
T Consensus 5 k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~kr 78 (121)
T 2juh_A 5 KSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 78 (121)
T ss_dssp CCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCC
T ss_pred cCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccC
Confidence 33333356788999999999999999999999999999999998788999999999999999997766544443
No 4
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.72 E-value=5.7e-18 Score=137.69 Aligned_cols=63 Identities=30% Similarity=0.704 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccccccccc
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEV 419 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~sk~e~ 419 (430)
++||.||+++|++||++||.|+|++|+..+|..|.+||.+|||||||||+|...+.+..++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~ 63 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGE 63 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCC
Confidence 589999999999999999999999999998877899999999999999999887766555443
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.4e-17 Score=130.36 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
-+++++||.||+++|++||++||. +|++|+..|. .|.+||+||||||||||+|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP-FQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC-CccCcccchHHHHHHHHHhcc
Confidence 357889999999999999999999 9999999984 279999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=2.2e-16 Score=122.09 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
+++++||+||+++|+++|++||.++|+.|+..++ |.+||++||+||||||+|.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 4567899999999999999999999999999864 579999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.51 E-value=2.2e-14 Score=110.72 Aligned_cols=61 Identities=25% Similarity=0.579 Sum_probs=54.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccc
Q 014097 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQ 413 (430)
Q Consensus 351 krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~ 413 (430)
+.++++.+||.||+++|+++|++||.++|+.|...+. |.+||++||++||+|+++......
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCCCC
Confidence 3577889999999999999999999999999999763 349999999999999999886644
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.47 E-value=4.8e-14 Score=103.88 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||+||+++|+++|++||.++|+.|...+. |.+||++||++||+|++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 467899999999999999999999999999763 3489999999999999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.22 E-value=1.1e-11 Score=90.39 Aligned_cols=50 Identities=28% Similarity=0.548 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||.+|++.|+++|++||.++|+.|...+ .+||..||+++|++++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999864 699999999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=3.5e-11 Score=90.20 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
..++.+||.||++.|+++|++||.++|+.|...+ .+||..||+++|++++++..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCCcc
Confidence 3457789999999999999999999999999875 58999999999999988653
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.15 E-value=3.6e-11 Score=87.86 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||.+|++.|+++|++||.++|..|...+ .+||..||+++|.|.+++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999998999999864 699999999999998865
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=89.62 Aligned_cols=55 Identities=20% Similarity=0.474 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 412 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~ 412 (430)
.++.+||.+|++.|+++|++||.++|+.|...+ .+||..||++||+|.+++....
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCcccC
Confidence 456789999999999999999999999999875 5999999999999999876543
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.10 E-value=1.1e-10 Score=88.12 Aligned_cols=51 Identities=20% Similarity=0.521 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.+||.+|++.|+++|++||.++|..|...+ .+||..||+++|.+++..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQM----CTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH----TTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh----CCCCHHHHHHHHHHHccCC
Confidence 46789999999999999999999999999977 5899999999999988654
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.06 E-value=2e-10 Score=86.52 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
+.+||.+|++.|+++|++||.++|..|..... .+||..||+++|.+..
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998762 2899999999998864
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.97 E-value=6.1e-10 Score=89.37 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=47.2
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHh
Q 014097 348 KIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405 (430)
Q Consensus 348 ~~~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL 405 (430)
+.+..+..+.+||.+|+..|+++|++|| ++|..|.... .+||..||+.+|.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v----~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHV----GSRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHH----SSCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHc----CCCCHHHHHHHHHHh
Confidence 3455666788999999999999999999 8999999976 489999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=1.8e-09 Score=83.95 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 412 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~ 412 (430)
-++.+||.||++.|+++|++||. +|+.|...+ .+||..|||.+|.++++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999 999999865 5999999999999998765443
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.1e-09 Score=81.10 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
++.+||.||++.|+++|++||. +|+.|.. + .+||..||+++|.++++....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~----~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H----HSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c----cCcCHHHHHHHHHHHhChHhc
Confidence 4568999999999999999998 9999999 5 379999999999999986644
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.81 E-value=4e-09 Score=85.93 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
++.+||.+|++.|+++|++||.++|..|...+ ++||+.||+++|++.+.+..
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~~ 54 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPEV 54 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccCCcc
Confidence 35789999999999999999999999999754 69999999999999887653
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=5.3e-09 Score=81.44 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGv-----GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
..+.+||.||++.|+++|++||. ++|..|...+ .+||..||+.+|.++++.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~----~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL----GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH----SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh----CCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999996 7999999976 589999999999887764
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.77 E-value=7.3e-09 Score=85.33 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
+.+||.+|++.|+++|++||.++|..|.... ++||+.||+++|+|.+.+...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~p~i~ 52 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYINPALR 52 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSSSCCT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHccccc
Confidence 3679999999999999999999999999865 599999999999999876543
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.77 E-value=7.7e-09 Score=87.56 Aligned_cols=54 Identities=26% Similarity=0.479 Sum_probs=47.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
+..++.+||.||++.|+++|++||. +|..|...+ .+||+.||++||+|.+....
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTSTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhccccc
Confidence 3456788999999999999999998 999999754 69999999999999887554
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.73 E-value=1e-08 Score=81.65 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
.-++.+||+||++.|++.|++||. +|+.|.+.+ +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-----gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-----GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-----TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-----CCCHHHHHHHHHHHHHH
Confidence 335678999999999999999998 699999864 89999999999988764
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.72 E-value=1.3e-08 Score=85.82 Aligned_cols=52 Identities=29% Similarity=0.643 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
++.+||.||++.|+++|++||.++|..|...+ ++||..||+++|.+.+.+..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTCSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999865 59999999999999887653
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.66 E-value=2.1e-08 Score=84.93 Aligned_cols=56 Identities=23% Similarity=0.522 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKN 415 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~s 415 (430)
++.+||.+|++.|+++|++||. +|+.|...+ ++||..+||+||+++++...+|...
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~~k~~~p~~~ 116 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKFF----PGRTDIHIKNRWVTISNKLGIPQTQ 116 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTS----TTCCHHHHHHHHHHHHHHTTC----
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 4568999999999999999995 999999743 6999999999999999877666543
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.66 E-value=1.5e-08 Score=86.07 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
+.+||.||++.|+.+|++||.++|..|...+ .+||+.||+++|+|.+.....
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~~~ 53 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDPAVV 53 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCcccc
Confidence 4689999999999999999999999998754 699999999999999876543
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.62 E-value=3e-08 Score=80.78 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||.+|++.|+++|++||. +|+.|... |++||..+||.+|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999996 99999974 3799999999999999874
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=2.7e-08 Score=79.16 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=46.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGv---GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
.+-.+.+||.+|+..|+.+|++||. .+|.+|...+ ++||..||+.+|.+|++-
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHc
Confidence 4556788999999999999999994 4899999866 599999999999999863
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.60 E-value=5.1e-08 Score=80.27 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
++.+||.+|++.|+.+|.+||. +|+.|...+ ++||..+||.+|+++++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhhH
Confidence 4679999999999999999997 999999865 6999999999999998753
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.53 E-value=8.5e-08 Score=81.48 Aligned_cols=54 Identities=20% Similarity=0.471 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQ 413 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~ 413 (430)
++.+||.+|++.|+++|.+||. +|+.|... |++||..+||++|+++++......
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3568999999999999999995 99999874 369999999999999998765443
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.49 E-value=9.4e-08 Score=80.63 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
++.+||.||++.|+++|++||. +|+.|...+ ++||..+||++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLL----PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGS----TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999997 999999753 699999999999999875
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.48 E-value=1.4e-07 Score=82.06 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
++.+||.+|++.|+++|++||.++|+.|...+ ++||..+|+++|++.+.+..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTCTTS
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhCccc
Confidence 46789999999999999999998999999754 69999999999999987553
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.46 E-value=3e-08 Score=86.26 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=12.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
.+.+||.||++.|+++|++||.++|..|...+ ++||+.||+++|++.+.+..
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~~ 56 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLNPEL 56 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHccCCCc
Confidence 46789999999999999999999999999765 59999999999999987654
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.78 E-value=3.1e-08 Score=80.42 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.+||.+|++.|+++|++||. +|+.|...+ .+||..+|+.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4568999999999999999999 999999764 6999999999999988754
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.21 E-value=1.4e-06 Score=72.28 Aligned_cols=48 Identities=19% Similarity=0.527 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGv---GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
...||.+|+..|++++.+||. .+|.+|.... ++||..+|+.+|.+|++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v----pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV----EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS----TTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 467999999999999999984 5799999976 58999999999999964
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=6.9e-06 Score=62.35 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=46.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 350 ~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
.+.|+...+||++|.+.+++++.+||. +|..|.... ++||..||...|....|.
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcCC
Confidence 445778899999999999999999996 999999554 699999999999876653
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.91 E-value=6e-06 Score=79.10 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGn-----WkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
.+.+||.||++.|++.|++||..+ |+.|... +++||.-+||++|++.++....
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhcc
Confidence 456899999999999999998853 9999974 3799999999999999987643
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.80 E-value=3.5e-05 Score=61.03 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 355 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGv---GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
....||.+|...|.+++.+|+. .+|.+|.... +||..|++.+|..|.+..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999995 5799999874 699999999999998764
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.78 E-value=2.9e-05 Score=64.88 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCCchhHHHHHHHhhhc
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~f-~vf~~RTsVDLKDKWRNL~K~ 408 (430)
..||.||++.|.+.+++||. +|..|.+.|. ..+..||-.|||+||..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999997 9999999873 234689999999999777654
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.36 E-value=5.6e-05 Score=60.06 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC---------CChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGV---------GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGv---------GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
++...||.+|+.+|+......-. ..|..|.......=-.||+.||++||.||.+.-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 44678999999999999975321 279999986421102799999999999999854
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.30 E-value=0.00029 Score=67.27 Aligned_cols=52 Identities=17% Similarity=0.427 Sum_probs=46.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~ 408 (430)
..+...+||.+|.+.+++|+.+||. +|..|.+.. .+||..|||..|.+..|.
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999997 999999976 589999999999887764
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.22 E-value=0.00047 Score=55.33 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGv---GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
...||.+|+.+|.+++..|+. ++|..|.... .+||..+|+.+|..|.+...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V----~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAV----GSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT----TTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc----CCCCHHHHHHHHHHHHhccc
Confidence 357999999999999999986 6899999976 48999999999999976543
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.19 E-value=0.00038 Score=62.31 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhc---------CC-CCCCCchhHHHHHHHhhhc
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---------SS-SSHRTPIDLRDKWRNLLRA 408 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f---------~v-f~~RTsVDLKDKWRNL~K~ 408 (430)
...||.+|+..|+.||.|||.|+|..|+++.. .. ...++++.|..|--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999731 11 2556788999997666654
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.04 E-value=0.00084 Score=56.26 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCCchhHHHHHHHhhh
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~f-~vf~~RTsVDLKDKWRNL~K 407 (430)
..||.||+..|.+.+++|+. +|-.|.+.|. ..+..||--|||+||-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999997 9999999973 33568999999999855554
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.0023 Score=49.02 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccc
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~ 410 (430)
+.....||++|.+...+|+.+||. +|..|...+ +..||..||..-|-...|...
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~ 59 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKKTSG 59 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHCSSC
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccCCCC
Confidence 445678999999999999999999 999999854 268999999988776665443
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.83 E-value=0.003 Score=49.42 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=47.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
-|+....||++|.....+|+.+||. +|..|...+ ++.||..||..-|-...|....
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchH
Confidence 4577889999999999999999999 899999743 3699999999988866665443
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.42 E-value=0.0029 Score=48.24 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 356 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKy--------GvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
|.+||.||+.+|++-|.+| |.--|+.|.... ++.+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 555798887721 369999999999988654
No 47
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.34 E-value=0.0019 Score=62.31 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 014097 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 386 (430)
Q Consensus 357 rkWT~EEveaLveGVeKyGvGnWkkIl~~~ 386 (430)
..|+.+|+..|+.||.+||.|+|..|+++-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 459999999999999999999999999974
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.26 E-value=0.0023 Score=62.73 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCCchhHHHHHHHhhhcc
Q 014097 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGv---GnWkkIl~~~-------f~v-f~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.||.+|+..|+-++.+||. |+|..|+... |+. |..||+++|..+-..|++.-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 447999999999999999999 9999998652 333 38999999999999998753
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.63 E-value=0.013 Score=60.75 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
.+..-+||.+|.+.+++||.+||. +|..|.... ..||..|+|.-|.+..+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~V----gTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHH----SSCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHh----CCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998 999999986 48999999998876554
No 50
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.35 E-value=0.011 Score=59.52 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCCchhHHHHHHHhhhcc
Q 014097 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGv---GnWkkIl~~~-------f~v-f~~RTsVDLKDKWRNL~K~~ 409 (430)
.+.||.+|+..|+-++.+||. |+|..|+... |+. |..||+..|..|-..|++.-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999 9999998862 333 48999999999999998864
No 51
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.03 E-value=0.058 Score=42.39 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=43.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCCchhHHH---HHHHhhh
Q 014097 352 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLRD---KWRNLLR 407 (430)
Q Consensus 352 rRKkRrkWT~EEveaLveGVeKyGvG--nWkkIl~~~f~vf~~RTsVDLKD---KWRNL~K 407 (430)
.+|+|..||+|.-+..+++|+++|.. .|+.|++... ..+.|..++|. |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999953 3889998764 26889999985 4565443
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.83 E-value=0.031 Score=49.91 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 353 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 353 RKkRrkWT~EEveaLveGVeKyG--vGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
|...+.||..|...|+.++.||| .++|..|..+.. |.++|..++++=++.+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVH 57 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999 589999999753 57999999998655544
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.88 E-value=0.014 Score=47.37 Aligned_cols=44 Identities=20% Similarity=0.500 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhcCCCCCCCchhHHHHH
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 402 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvG---nWkkIl~~~f~vf~~RTsVDLKDKW 402 (430)
....||.+|..+|..++.+|..+ +|.+|.... ++||..+++..|
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V----pGKT~eEVk~hY 65 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV----KGRTPEEVKKHY 65 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS----CSSCHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc----CCCCHHHHHHHH
Confidence 35679999999999999999976 999999866 589999998765
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.43 E-value=0.054 Score=44.52 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=42.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 351 krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+.|+....||++|.+.+.+++..||. +|..|... ++.||..+|-.=|-...|
T Consensus 38 ~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 38 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHHSC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhcccc
Confidence 34567889999999999999999998 99999653 379999999876654443
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=90.40 E-value=0.65 Score=39.22 Aligned_cols=58 Identities=16% Similarity=0.359 Sum_probs=49.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097 350 DDRRKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (430)
Q Consensus 350 ~krRKkRrkWT~EEveaLveGVeKyGv--GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~ 411 (430)
++.-.+-..||.+|+..++...++-|. -.|+.|...+ .+|++-++++|++.|++.-+.
T Consensus 27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHHHH
Confidence 334556788999999999999999986 4899998877 589999999999999986543
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.43 E-value=1.4 Score=42.43 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCCchhHHHHHHHhhh
Q 014097 355 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyG--vGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K 407 (430)
+++.||..|...|++++.||| .++|..|..+. .+..+....++.=+..|+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHH
Confidence 467899999999999999999 47999999874 3678999888877765553
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=82.91 E-value=1.4 Score=42.55 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.7
Q ss_pred CChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 377 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 377 GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
+.|+.|...+ ++||.+..|||||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3699998865 6999999999999998755
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=83.49 E-value=0.24 Score=39.83 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCCchhHHHHHHHhhhcc
Q 014097 354 KNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (430)
Q Consensus 354 KkRrkWT~EEveaLveGVeKyGv--GnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~ 409 (430)
..-..||.+|+..++...++-|. -.|+.|...+ +||+-|++.|++.|++.-
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLF 64 (70)
Confidence 35667999999999999999986 3677777544 899999999999998753
No 59
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=57.15 E-value=6.5 Score=26.39 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.7
Q ss_pred cccCCCCCCCCCccccCCCC
Q 014097 312 LRGGRLKKRSPILGFESDDD 331 (430)
Q Consensus 312 ~R~srm~kn~Sa~t~E~Dd~ 331 (430)
.|+.||+| +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35566777 88999873
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=50.90 E-value=13 Score=36.50 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (430)
Q Consensus 355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~ 406 (430)
--..||..+-.+++.|+.+||..+|..|.... .+.|..+.+.=...+.
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev----~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV----EGKTPEEVIEYNAVFW 156 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS----TTCCHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh----cCCCHHHHHHHHHHHH
Confidence 34569999999999999999999999999876 4788888876544443
No 61
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=50.33 E-value=7.9 Score=25.98 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=7.9
Q ss_pred ccccCCCCCCC
Q 014097 324 LGFESDDDIFS 334 (430)
Q Consensus 324 ~t~E~Dd~~d~ 334 (430)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 56799986554
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=48.77 E-value=3.7 Score=42.76 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHH
Q 014097 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRN 404 (430)
Q Consensus 356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRN 404 (430)
...||.+|...+.+|+.+||. +|..|...+ ++||..+|-.-|..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~l----p~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQML----PDKSIASLVKFYYS 232 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHHc----CCCCHHHHHHHhcc
Confidence 347999999999999999998 999998643 68888888755433
No 63
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.28 E-value=11 Score=29.67 Aligned_cols=20 Identities=45% Similarity=0.798 Sum_probs=16.0
Q ss_pred ccccccccccchhhhhcccC
Q 014097 251 GTKVKRLRKPTKRYIEESSD 270 (430)
Q Consensus 251 ~~~~kr~rkptkRyIEe~Sd 270 (430)
|++.--||...+|||||+-+
T Consensus 49 gtktahirealrryieeige 68 (70)
T 2q2k_A 49 GTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp TCHHHHHHHHHHHHHHHCC-
T ss_pred ccchHHHHHHHHHHHHHhcc
Confidence 46666899999999999865
Done!