BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014098
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 237 bits (605), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
RMIE+ + GVE+ VNTDAQA+ +S E ++QIG LTRGLGAG NP VG AA ESK
Sbjct: 29 RMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAKLTRGLGAGANPEVGKKAAEESK 86
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IEEA+ GADM+F K +G LTVG+ T PF FEGR+R +Q
Sbjct: 87 EQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQ 146
Query: 252 AQEGVANLRNNVDTLII----------------------------------------PGL 271
A G++ ++ VDTLI+ PGL
Sbjct: 147 AAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGL 206
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
+N+DFADV+ IM + GS+LMGIG ATG++RA +AA AI SPLL+ I+ A G++ NITG
Sbjct: 207 INLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITG 266
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
GT+L+L+EV AA+++ D N+IFG+VI+++L +++ +T+IATGF
Sbjct: 267 GTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGF 315
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
RMIE+ + GVE+ VNTDAQA+ +S E ++QIG LTRGLGAG NP VG AA ESK
Sbjct: 19 RMIENEVQGVEYIAVNTDAQALNLSK--AEVKMQIGAKLTRGLGAGANPEVGKKAAEESK 76
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IEEA+ GADM+F K +G LTVG+ T PF FEGR+R +Q
Sbjct: 77 EQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQ 136
Query: 252 AQEGVANLRNNVDTLII----------------------------------------PGL 271
A G++ ++ VDTLI+ PGL
Sbjct: 137 AAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGL 196
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
+N+DFADV+ IM + GS+LMGIG ATG++RA +AA AI SPLL+ I+ A G++ NITG
Sbjct: 197 INLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITG 256
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
GT+L+L+EV AA+++ D N+IFG+VI+++L +++ +T+IATGF
Sbjct: 257 GTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGF 305
>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RLU|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RQ2|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ2|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ7|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
pdb|1RQ7|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
Length = 382
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 170/293 (58%), Gaps = 42/293 (14%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187
NAVNRMIE + GVEF +NTDAQA+ +S + +L +G D TRGLGAG +P VG AA
Sbjct: 25 NAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
++K IEE + GADM+F + +G LTVG+ T PF FEG+R
Sbjct: 83 EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKR 142
Query: 248 RAIQAQEGVANLRNNVDTLII--------------------------------------- 268
R+ QA+ G+A LR + DTLI+
Sbjct: 143 RSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLIT 202
Query: 269 -PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
PGL+NVDFADV+ IM AG++LMGIG+A G+ R+ AA AI SPLL+ +E A G++
Sbjct: 203 TPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLM 262
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
+I GG+DL LFE+N AA ++ D P AN+IFG VID SL ++V +T+IA GF
Sbjct: 263 SIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGF 315
>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1X|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1Y|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
pdb|2Q1Y|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
Length = 379
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 170/293 (58%), Gaps = 42/293 (14%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187
NAVNRMIE + GVEF +NTDAQA+ +S + +L +G D TRGLGAG +P VG AA
Sbjct: 22 NAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGLGAGADPEVGRKAA 79
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
++K IEE + GADM+F + +G LTVG+ T PF FEG+R
Sbjct: 80 EDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKR 139
Query: 248 RAIQAQEGVANLRNNVDTLII--------------------------------------- 268
R+ QA+ G+A LR + DTLI+
Sbjct: 140 RSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLIT 199
Query: 269 -PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
PGL+NVDFADV+ IM AG++LMGIG+A G+ R+ AA AI SPLL+ +E A G++
Sbjct: 200 TPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLM 259
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
+I GG+DL LFE+N AA ++ D P AN+IFG VID SL ++V +T+IA GF
Sbjct: 260 SIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGF 312
>pdb|4E6E|A Chain A, Crystal Structure Of A Putative Cell Division Protein Ftsz
(Tfu_1113) From Thermobifida Fusca Yx-Er1 At 2.22 A
Resolution
Length = 314
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 167/293 (56%), Gaps = 42/293 (14%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187
NAVNR IE + GVEF +NTDAQA+ S + +L +G +LTRGLGAG NP VG AA
Sbjct: 23 NAVNRXIEEGLKGVEFIAINTDAQALLXSD--ADVKLDVGRELTRGLGAGANPDVGRKAA 80
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
+ + IEE + GAD +F +S+G LT+G+ T PF FEG+R
Sbjct: 81 EDHREEIEEVLKGADXVFVTAGEGGGTGTGGAPVVANIARSLGALTIGVVTRPFSFEGKR 140
Query: 248 RAIQAQEGVANLRNNVDTLII--------------------------------------- 268
RA QA+ G+A LR VDTLI+
Sbjct: 141 RATQAEAGIAXLREEVDTLIVIPNDRLLSISDRQVSVLDAFKAADQVLLSGVQGITDLIT 200
Query: 269 -PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
PGL+N+DFADV+++ AGS+L GIG+A G RA AA AI SPLL+ I+ A G++
Sbjct: 201 TPGLINLDFADVKSVXSGAGSALXGIGSARGDDRAVAAAEXAISSPLLEASIDGAHGVLL 260
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
+I GG+DL LFE+N AA+++ + AN+IFGAVID +L ++V +T+IA GF
Sbjct: 261 SIQGGSDLGLFEINEAAQLVANSAAAEANIIFGAVIDDALGDEVRVTVIAAGF 313
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 161/289 (55%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
RMI+ M VEF +NTD QA+ +S E+++QIG LTRGLGAG NP +G AA ES+
Sbjct: 35 RMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGEKLTRGLGAGANPEIGKKAAEESR 92
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IE+AI GADM+F K MG LTVG+ T PF FEGR+R Q
Sbjct: 93 EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 152
Query: 252 AQEGVANLRNNVDTLI----------------------------------------IPGL 271
A GV ++ VDTLI + G
Sbjct: 153 AAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGE 212
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
VN+DFADV+ IM + GS+LMGIG ++G++RA +AA AI SPLL+ I A G++ NITG
Sbjct: 213 VNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITG 272
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
G L+LFE AA+++ D D N+IFG VI+ L +++ +T+IATGF
Sbjct: 273 GESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 321
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 161/289 (55%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
RMI+ M VEF +NTD QA+ +S E+++QIG LTRGLGAG NP +G AA ES+
Sbjct: 31 RMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGEKLTRGLGAGANPEIGKKAAEESR 88
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IE+AI GADM+F K MG LTVG+ T PF FEGR+R Q
Sbjct: 89 EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 148
Query: 252 AQEGVANLRNNVDTLI----------------------------------------IPGL 271
A GV ++ VDTLI + G
Sbjct: 149 AAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGE 208
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
VN+DFADV+ IM + GS+LMGIG ++G++RA +AA AI SPLL+ I A G++ NITG
Sbjct: 209 VNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITG 268
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
G L+LFE AA+++ D D N+IFG VI+ L +++ +T+IATGF
Sbjct: 269 GESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 317
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 161/289 (55%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
RMI+ M VEF +NTD QA+ +S E+++QIG LTRGLGAG NP +G AA ES+
Sbjct: 21 RMIDHGMNNVEFIAINTDGQALNLSK--AESKIQIGEKLTRGLGAGANPEIGKKAAEESR 78
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IE+AI GADM+F K MG LTVG+ T PF FEGR+R Q
Sbjct: 79 EQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQ 138
Query: 252 AQEGVANLRNNVDTLI----------------------------------------IPGL 271
A GV ++ VDTLI + G
Sbjct: 139 AAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGE 198
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
VN+DFADV+ IM + GS+LMGIG ++G++RA +AA AI SPLL+ I A G++ NITG
Sbjct: 199 VNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITG 258
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
G L+LFE AA+++ D D N+IFG VI+ L +++ +T+IATGF
Sbjct: 259 GESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 307
>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|B Chain B, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|C Chain C, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|D Chain D, Staphylococcus Aureus Ftsz Apo-Form (Semet)
Length = 308
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 154/289 (53%), Gaps = 42/289 (14%)
Query: 132 RMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191
R I+ VEF +NTD QA+ +S E+++QIG LTRGLGAG NP +G AA ES+
Sbjct: 21 RXIDHGXNNVEFIAINTDGQALNLSK--AESKIQIGEKLTRGLGAGANPEIGKKAAEESR 78
Query: 192 VAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRRRAIQ 251
IE+AI GAD +F K G LTVG+ T PF FEGR+R Q
Sbjct: 79 EQIEDAIQGADXVFVTSGXGGGTGTGAAPVVAKIAKEXGALTVGVVTRPFSFEGRKRQTQ 138
Query: 252 AQEGVANLRNNVDTLI----------------------------------------IPGL 271
A GV + VDTLI + G
Sbjct: 139 AAAGVEAXKAAVDTLIVIPNDRLLDIVDKSTPXXEAFKEADNVLRQGVQGISDLIAVSGE 198
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
VN+DFADV+ I + GS+L GIG ++G++RA +AA AI SPLL+ I A G++ NITG
Sbjct: 199 VNLDFADVKTIXSNQGSALXGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLXNITG 258
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
G L+LFE AA+++ D D N IFG VI+ L +++ +T+IATGF
Sbjct: 259 GESLSLFEAQEAADIVQDAADEDVNXIFGTVINPELQDEIVVTVIATGF 307
>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp
Length = 394
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 157/300 (52%), Gaps = 44/300 (14%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187
NAVN M ++++ GVEF NTDAQA+K + LQ+G +T+GLGAG NP VG AA
Sbjct: 25 NAVNHMAKNNVEGVEFICANTDAQALK--NIAARTVLQLGPGVTKGLGAGANPEVGRQAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
E + I E + GADM+F K MGILTV + T PF FEGR+
Sbjct: 83 LEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK 142
Query: 248 RAIQAQEGVANLRNNVDTLII--------------------------------------- 268
R A EG+ L +VD+LI
Sbjct: 143 RMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIK 202
Query: 269 -PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL-DIGIETATGIV 326
PG++NVDFADV+ +M + G ++MG G A+G +RAR+A AI++PLL D+ ++ A GI+
Sbjct: 203 RPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGIL 262
Query: 327 WNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDKLE 386
NIT G DL+L E + +I A + G VID + +++ +T++ATG G +LE
Sbjct: 263 VNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGL-GARLE 321
>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
pdb|1OFU|B Chain B, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
Length = 320
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 153/294 (52%), Gaps = 43/294 (14%)
Query: 128 NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187
NAVN M ++++ GVEF NTDAQA+K + LQ+G +T+GLGAG NP VG AA
Sbjct: 25 NAVNHMAKNNVEGVEFICANTDAQALK--NIAARTVLQLGPGVTKGLGAGANPEVGRQAA 82
Query: 188 NESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGRR 247
E + I E + GADM+F K MGILTV + T PF FEGR+
Sbjct: 83 LEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK 142
Query: 248 RAIQAQEGVANLRNNVDTLII--------------------------------------- 268
R A EG+ L +VD+LI
Sbjct: 143 RMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIK 202
Query: 269 -PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL-DIGIETATGIV 326
PG++NVDFADV+ +M + G ++MG G A+G +RAR+A AI++PLL D+ ++ A GI+
Sbjct: 203 RPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGIL 262
Query: 327 WNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
NIT G DL+L E + +I A + G VID + +++ +T++ATG
Sbjct: 263 VNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGL 316
>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
pdb|1W5F|B Chain B, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
Length = 353
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 153/297 (51%), Gaps = 45/297 (15%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186
+NA+NRMIE + GVEF VNTD Q ++ S + ++QIG ++TRGLGAGG P +G A
Sbjct: 34 NNAINRMIEIGIHGVEFVAVNTDLQVLEASNA--DVKIQIGENITRGLGAGGRPEIGEQA 91
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
A ES+ I E + M+F K MGILTV I T PF FEG
Sbjct: 92 ALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGP 151
Query: 247 RRAIQAQEGVANLRNNVDTLI----------IPGLVNVD--------------------- 275
R +A EG+ LR +VDTLI +P V +
Sbjct: 152 ERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELI 211
Query: 276 -----------FADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATG 324
FA + ++MKDAG++++GIG G+ RAR+AA A++S L++ +E A+
Sbjct: 212 TKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASS 271
Query: 325 IVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSL-SNQVSITLIATGF 380
IV+NIT +++ + EV+ AA +I A++ FG + D + +++ + IAT F
Sbjct: 272 IVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRF 328
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 41/294 (13%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186
+N + R+ + G + +NTDAQ + + + ++ IG LTRGLGAGGNP +G A
Sbjct: 50 NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
A ES I+ AI +DM+F K +G LTV + T+PF EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLI-IP------------------------------------ 269
R A EG+ L+ + DTL+ IP
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELIT 227
Query: 270 --GLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
GL+NVDFADV+A+M + G +++GIG + + RA++A A+ SPLLD+ I+ ATG +
Sbjct: 228 KDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALI 287
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFK 381
++ G DLTL E + +DP+A +I+GA ID++L N V + L+ TG +
Sbjct: 288 HVMGPEDLTLEEAREVVATVSSRLDPNATIIYGATIDENLENTVRVLLVITGVQ 341
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 41/294 (13%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186
+N + R+ + G + +NTDAQ + + + ++ IG LTRGLGAGGNP +G A
Sbjct: 50 NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
A ES I+ AI +DM+F K +G LTV + T+PF EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLI-IP------------------------------------ 269
R A EG+ L+ + DTL+ IP
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELIT 227
Query: 270 --GLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
GL+NVDFADV+A+M + G +++GIG + + RA++A A+ SPLLD+ I+ ATG +
Sbjct: 228 KDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALI 287
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFK 381
++ G DLTL E + +DP+A +I+GA ID++L N V + L+ TG +
Sbjct: 288 HVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQ 341
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 41/294 (13%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186
+N + R+ + G + +NTDAQ + + + ++ IG LTRGLGAGGNP +G A
Sbjct: 50 NNTITRLKMEGIEGAKTVAINTDAQQLIRTK--ADKKILIGKKLTRGLGAGGNPKIGEEA 107
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
A ES I+ AI +DM+F K +G LTV + T+PF EG+
Sbjct: 108 AKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGK 167
Query: 247 RRAIQAQEGVANLRNNVDTLI-IP------------------------------------ 269
R A EG+ L+ + DTL+ IP
Sbjct: 168 VRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELIT 227
Query: 270 --GLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVW 327
GL+NVDFADV+A+M + G +++GIG + + RA++A A+ SPLLD+ I+ ATG +
Sbjct: 228 KDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALI 287
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFK 381
++ G DLTL E + +DP+A +I+GA ID++L N V + L+ TG +
Sbjct: 288 HVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQ 341
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 144/301 (47%), Gaps = 43/301 (14%)
Query: 127 SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186
SNAVNRM E + GVE + +NTD Q + V N++QIG +TRGLGAG P VG A
Sbjct: 20 SNAVNRMYEDGIEGVELYAINTDVQHLSTLKV--PNKIQIGEKVTRGLGAGAKPEVGEEA 77
Query: 187 ANESKVAIEEAISGADMIFXXXXXXXXXXXXXXXXXXXXXKSMGILTVGIATVPFCFEGR 246
A E I+E + DM+F K MGILTV +AT+PF FEG
Sbjct: 78 ALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGP 137
Query: 247 RRAIQAQEGVANLRNNVDTLII-------------------------------------- 268
R+ +A +G+ L+ + D I+
Sbjct: 138 RKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSIV 197
Query: 269 --PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIG-IETATGI 325
P ++NVDFADVR +++ G S++G+G G +A A A+ SPLL+ IE A +
Sbjct: 198 VTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKAVTSPLLEGNTIEGARRL 257
Query: 326 VWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDKL 385
+ I D+ V+ E I+ V P A +IFGAV++ + + + ++AT F +K
Sbjct: 258 LVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQEQDFIRVAIVATDFPEEKF 317
Query: 386 E 386
+
Sbjct: 318 Q 318
>pdb|3FFC|E Chain E, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|J Chain J, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 247
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 322 ATGIVWNITGGTDLTLFEVNTAAEVIYDLVD---PSANLIFGAVIDKSLSNQVSITLIAT 378
A+ W G TD F T V+ DL + P + + + S + + ++ +AT
Sbjct: 92 ASSFTWTSGGATDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT 151
Query: 379 GFKGDKLE------GKGTH 391
GF D +E GK H
Sbjct: 152 GFYPDHVELSWWVNGKEVH 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,679,785
Number of Sequences: 62578
Number of extensions: 392037
Number of successful extensions: 1056
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 38
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)