Query 014098
Match_columns 430
No_of_seqs 229 out of 1218
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 2.6E-80 5.5E-85 632.1 37.0 267 112-380 11-318 (384)
2 PRK13018 cell division protein 100.0 1E-73 2.2E-78 582.9 37.4 314 111-429 25-377 (378)
3 COG0206 FtsZ Cell division GTP 100.0 4.3E-74 9.3E-79 577.0 30.2 271 111-383 8-318 (338)
4 TIGR00065 ftsZ cell division p 100.0 1.1E-70 2.3E-75 556.4 34.2 275 108-384 11-328 (349)
5 cd02201 FtsZ_type1 FtsZ is a G 100.0 4.1E-69 8.9E-74 534.4 33.3 263 115-379 1-304 (304)
6 cd02191 FtsZ FtsZ is a GTPase 100.0 1.3E-68 2.9E-73 531.8 32.3 263 115-379 1-303 (303)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 1E-57 2.2E-62 461.7 32.3 265 115-382 1-345 (349)
8 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.1E-29 2.3E-34 253.8 15.9 255 116-378 1-327 (328)
9 smart00864 Tubulin Tubulin/Fts 100.0 2E-27 4.2E-32 221.6 16.7 149 116-267 1-149 (192)
10 PF12327 FtsZ_C: FtsZ family, 99.9 1.5E-27 3.2E-32 201.1 12.6 95 287-381 1-95 (95)
11 PF00091 Tubulin: Tubulin/FtsZ 99.9 4E-26 8.6E-31 216.2 11.1 152 116-267 1-192 (216)
12 cd06059 Tubulin The tubulin su 99.8 7.1E-19 1.5E-23 180.1 11.1 163 117-285 2-218 (382)
13 smart00865 Tubulin_C Tubulin/F 99.6 6.4E-15 1.4E-19 124.4 13.5 112 272-383 1-114 (120)
14 cd02190 epsilon_tubulin The tu 99.5 2.1E-14 4.6E-19 147.6 10.2 227 117-350 3-292 (379)
15 PTZ00387 epsilon tubulin; Prov 99.3 2E-11 4.4E-16 128.8 12.7 151 116-267 3-200 (465)
16 cd02188 gamma_tubulin Gamma-tu 99.1 4.2E-10 9.2E-15 117.9 14.0 148 117-267 3-201 (431)
17 PLN00222 tubulin gamma chain; 99.1 4.9E-10 1.1E-14 118.1 13.8 149 116-267 4-203 (454)
18 cd02189 delta_tubulin The tubu 99.1 4.3E-10 9.2E-15 118.2 13.3 169 117-285 2-226 (446)
19 cd02186 alpha_tubulin The tubu 99.1 5.5E-10 1.2E-14 117.0 13.8 168 117-285 3-232 (434)
20 cd02187 beta_tubulin The tubul 99.1 9.3E-10 2E-14 115.0 15.1 165 116-285 2-230 (425)
21 PF13809 Tubulin_2: Tubulin li 99.1 1.9E-09 4.1E-14 109.6 13.4 147 118-264 1-222 (345)
22 PLN00220 tubulin beta chain; P 99.0 2.7E-09 5.9E-14 112.2 14.0 147 116-267 3-200 (447)
23 PTZ00335 tubulin alpha chain; 98.9 9E-09 2E-13 108.4 13.3 165 116-285 3-233 (448)
24 PTZ00010 tubulin beta chain; P 98.7 1.9E-07 4.1E-12 98.4 14.0 147 116-267 3-200 (445)
25 PLN00221 tubulin alpha chain; 98.6 6.1E-07 1.3E-11 94.8 14.3 165 116-285 3-233 (450)
26 COG5023 Tubulin [Cytoskeleton] 97.8 6.2E-05 1.3E-09 77.7 8.4 185 161-350 87-336 (443)
27 KOG1374 Gamma tubulin [Cytoske 97.4 0.00051 1.1E-08 71.2 8.0 111 172-284 96-233 (448)
28 TIGR03649 ergot_EASG ergot alk 96.6 0.054 1.2E-06 52.4 14.1 195 116-348 1-213 (285)
29 PF13460 NAD_binding_10: NADH( 95.3 0.16 3.4E-06 45.6 9.8 96 117-238 1-97 (183)
30 CHL00194 ycf39 Ycf39; Provisio 95.1 1.9 4.1E-05 42.8 17.9 101 115-238 1-109 (317)
31 PF05368 NmrA: NmrA-like famil 94.8 0.62 1.3E-05 43.8 12.9 198 117-348 1-225 (233)
32 PF00056 Ldh_1_N: lactate/mala 94.7 0.14 3E-06 46.0 7.7 103 115-242 1-122 (141)
33 cd01483 E1_enzyme_family Super 94.2 0.31 6.6E-06 43.0 8.8 37 116-154 1-37 (143)
34 TIGR02356 adenyl_thiF thiazole 94.1 0.3 6.5E-06 46.3 9.0 109 110-236 17-142 (202)
35 PRK12475 thiamine/molybdopteri 93.9 0.27 6E-06 50.5 8.9 46 109-156 19-64 (338)
36 cd01485 E1-1_like Ubiquitin ac 93.9 0.52 1.1E-05 44.7 10.1 43 111-155 16-58 (198)
37 PTZ00082 L-lactate dehydrogena 93.8 0.58 1.3E-05 47.7 11.0 76 114-216 6-90 (321)
38 PRK06153 hypothetical protein; 93.8 0.32 7E-06 51.2 9.2 42 112-155 174-215 (393)
39 COG0569 TrkA K+ transport syst 93.7 0.41 8.8E-06 46.3 9.2 98 115-240 1-103 (225)
40 PF00899 ThiF: ThiF family; I 93.7 0.67 1.4E-05 40.6 9.9 111 114-239 2-126 (135)
41 PRK07688 thiamine/molybdopteri 93.5 0.41 9E-06 49.2 9.4 46 109-156 19-64 (339)
42 cd06060 misato Human Misato sh 93.3 0.38 8.2E-06 52.1 9.1 93 174-267 121-224 (493)
43 TIGR02355 moeB molybdopterin s 93.3 0.88 1.9E-05 44.5 10.9 45 110-156 20-64 (240)
44 PRK05086 malate dehydrogenase; 93.3 0.74 1.6E-05 46.7 10.7 106 115-242 1-122 (312)
45 cd00757 ThiF_MoeB_HesA_family 92.9 0.57 1.2E-05 45.0 8.9 44 110-155 17-60 (228)
46 PRK08328 hypothetical protein; 92.6 0.89 1.9E-05 44.1 9.8 43 111-155 24-66 (231)
47 PLN02657 3,8-divinyl protochlo 92.5 15 0.00032 38.2 20.0 37 111-150 57-94 (390)
48 PRK06223 malate dehydrogenase; 92.5 0.84 1.8E-05 45.4 9.7 37 115-153 3-39 (307)
49 cd05290 LDH_3 A subgroup of L- 92.4 1.2 2.6E-05 45.2 10.8 73 116-215 1-83 (307)
50 TIGR00561 pntA NAD(P) transhyd 92.4 2.6 5.5E-05 46.1 13.8 97 112-212 162-259 (511)
51 cd00650 LDH_MDH_like NAD-depen 92.2 8.7 0.00019 37.6 16.3 74 117-214 1-84 (263)
52 PF03435 Saccharop_dh: Sacchar 92.2 1 2.2E-05 46.2 10.2 133 117-284 1-141 (386)
53 PTZ00117 malate dehydrogenase; 92.0 1.4 3E-05 44.8 10.7 36 113-150 4-39 (319)
54 PF01488 Shikimate_DH: Shikima 91.7 0.4 8.6E-06 42.5 5.7 78 111-212 9-87 (135)
55 PRK08644 thiamine biosynthesis 91.7 0.74 1.6E-05 44.1 7.9 43 111-155 25-67 (212)
56 PRK15116 sulfur acceptor prote 91.4 1.3 2.7E-05 44.5 9.5 44 110-155 26-69 (268)
57 PRK05597 molybdopterin biosynt 91.3 0.89 1.9E-05 46.9 8.6 44 110-155 24-67 (355)
58 TIGR01759 MalateDH-SF1 malate 91.1 1.9 4.2E-05 44.1 10.7 36 113-148 2-42 (323)
59 PRK08223 hypothetical protein; 90.8 1.9 4E-05 43.8 10.1 44 111-156 24-67 (287)
60 cd01492 Aos1_SUMO Ubiquitin ac 90.7 1.8 3.9E-05 41.1 9.4 42 112-155 19-60 (197)
61 PF03721 UDPG_MGDP_dh_N: UDP-g 90.7 0.34 7.3E-06 45.6 4.5 79 115-210 1-86 (185)
62 cd01491 Ube1_repeat1 Ubiquitin 90.7 1.7 3.6E-05 44.0 9.6 78 112-206 17-94 (286)
63 cd05293 LDH_1 A subgroup of L- 90.6 2.3 5E-05 43.2 10.7 103 114-242 3-124 (312)
64 PRK09496 trkA potassium transp 90.5 1.5 3.3E-05 45.5 9.5 96 115-237 1-99 (453)
65 cd00755 YgdL_like Family of ac 90.5 1.1 2.4E-05 43.8 8.0 42 112-155 9-50 (231)
66 PLN02427 UDP-apiose/xylose syn 90.3 21 0.00045 36.4 17.4 78 115-213 15-99 (386)
67 PRK00066 ldh L-lactate dehydro 90.2 3.5 7.6E-05 41.9 11.6 34 114-148 6-39 (315)
68 PRK10886 DnaA initiator-associ 90.1 3.8 8.3E-05 39.1 11.1 102 113-241 40-147 (196)
69 PLN00106 malate dehydrogenase 90.1 1.6 3.5E-05 44.7 9.2 83 111-215 15-101 (323)
70 PRK12549 shikimate 5-dehydroge 90.1 1.9 4.2E-05 43.1 9.5 105 113-242 126-232 (284)
71 PF03807 F420_oxidored: NADP o 89.9 0.41 9E-06 39.0 3.9 39 116-154 1-40 (96)
72 PRK05442 malate dehydrogenase; 89.9 2.2 4.7E-05 43.8 9.8 36 113-148 3-43 (326)
73 cd01338 MDH_choloroplast_like 89.5 2.4 5.2E-05 43.3 9.8 35 114-148 2-41 (322)
74 cd05291 HicDH_like L-2-hydroxy 89.4 3.3 7.1E-05 41.6 10.6 35 116-151 2-36 (306)
75 PRK05690 molybdopterin biosynt 89.4 2.3 5E-05 41.6 9.2 45 109-155 27-71 (245)
76 PTZ00325 malate dehydrogenase; 89.2 2.7 5.8E-05 43.1 9.9 142 113-285 7-167 (321)
77 COG0039 Mdh Malate/lactate deh 89.2 2.3 5E-05 43.7 9.3 104 115-242 1-122 (313)
78 KOG2013 SMT3/SUMO-activating c 88.8 0.87 1.9E-05 49.3 6.2 42 114-155 12-54 (603)
79 cd05294 LDH-like_MDH_nadp A la 88.6 5.4 0.00012 40.3 11.5 34 115-149 1-35 (309)
80 PF01073 3Beta_HSD: 3-beta hyd 88.4 24 0.00052 35.0 15.8 200 121-342 5-262 (280)
81 cd01339 LDH-like_MDH L-lactate 88.4 2.1 4.6E-05 42.7 8.5 33 117-151 1-33 (300)
82 PRK00048 dihydrodipicolinate r 87.9 3.2 7E-05 40.7 9.2 94 115-244 2-97 (257)
83 cd05296 GH4_P_beta_glucosidase 87.9 1.1 2.3E-05 47.6 6.2 77 115-214 1-89 (419)
84 PLN02602 lactate dehydrogenase 87.5 5.5 0.00012 41.4 11.0 33 115-148 38-70 (350)
85 TIGR01214 rmlD dTDP-4-dehydror 87.5 28 0.0006 33.4 18.3 30 116-148 1-31 (287)
86 PRK05865 hypothetical protein; 87.2 23 0.0005 41.2 16.6 187 115-346 1-200 (854)
87 PRK15076 alpha-galactosidase; 87.1 3.2 7E-05 44.1 9.2 83 115-212 2-87 (431)
88 PRK00421 murC UDP-N-acetylmura 86.9 5.1 0.00011 42.3 10.6 86 112-235 5-95 (461)
89 cd05298 GH4_GlvA_pagL_like Gly 86.8 1.8 3.9E-05 46.2 7.1 75 115-212 1-86 (437)
90 PRK14852 hypothetical protein; 86.5 3.3 7.2E-05 48.5 9.5 112 111-235 329-454 (989)
91 cd01337 MDH_glyoxysomal_mitoch 86.4 5.7 0.00012 40.6 10.2 79 115-215 1-83 (310)
92 KOG2015 NEDD8-activating compl 86.4 1.1 2.4E-05 46.5 5.1 40 114-153 40-80 (422)
93 cd05292 LDH_2 A subgroup of L- 86.3 2.8 6E-05 42.3 7.9 35 115-150 1-35 (308)
94 cd00704 MDH Malate dehydrogena 86.2 4.6 0.0001 41.3 9.5 87 115-216 1-92 (323)
95 TIGR03693 ocin_ThiF_like putat 86.1 1.7 3.6E-05 48.5 6.6 105 109-230 124-231 (637)
96 cd01488 Uba3_RUB Ubiquitin act 85.9 1.9 4.1E-05 43.7 6.5 74 116-206 1-74 (291)
97 TIGR01772 MDH_euk_gproteo mala 85.9 3.8 8.3E-05 41.8 8.7 78 116-215 1-82 (312)
98 PRK02705 murD UDP-N-acetylmura 85.8 4.2 9E-05 42.6 9.2 89 115-235 1-97 (459)
99 cd00300 LDH_like L-lactate deh 85.8 6.4 0.00014 39.5 10.2 33 117-150 1-33 (300)
100 cd01065 NAD_bind_Shikimate_DH 85.7 1.2 2.5E-05 39.2 4.4 41 112-154 17-57 (155)
101 PRK13302 putative L-aspartate 85.6 9.3 0.0002 38.0 11.1 92 112-235 4-96 (271)
102 TIGR00872 gnd_rel 6-phosphoglu 85.4 7.4 0.00016 38.9 10.4 38 115-155 1-38 (298)
103 PRK09987 dTDP-4-dehydrorhamnos 85.0 42 0.00091 33.1 16.4 23 115-137 1-24 (299)
104 TIGR01757 Malate-DH_plant mala 84.9 5 0.00011 42.3 9.2 28 113-140 43-71 (387)
105 cd01484 E1-2_like Ubiquitin ac 84.8 2.4 5.1E-05 41.6 6.4 38 116-155 1-38 (234)
106 PRK07634 pyrroline-5-carboxyla 84.6 1.7 3.7E-05 41.4 5.2 41 114-154 4-46 (245)
107 PLN02688 pyrroline-5-carboxyla 84.2 1.4 3E-05 42.7 4.5 40 115-154 1-42 (266)
108 PLN02735 carbamoyl-phosphate s 84.2 26 0.00056 41.8 15.5 97 113-235 22-133 (1102)
109 cd01336 MDH_cytoplasmic_cytoso 83.9 2.9 6.3E-05 42.7 6.8 87 114-215 2-93 (325)
110 COG2403 Predicted GTPase [Gene 83.5 3 6.6E-05 44.1 6.8 156 218-383 143-332 (449)
111 PLN02968 Probable N-acetyl-gam 83.3 5.3 0.00011 41.9 8.6 40 111-152 35-75 (381)
112 PRK11064 wecC UDP-N-acetyl-D-m 83.2 6.9 0.00015 41.2 9.5 39 114-155 3-41 (415)
113 TIGR02354 thiF_fam2 thiamine b 82.8 3.9 8.5E-05 38.9 6.8 39 111-151 18-56 (200)
114 PLN03209 translocon at the inn 82.8 17 0.00036 40.5 12.5 117 109-234 75-203 (576)
115 PRK08762 molybdopterin biosynt 82.8 8.1 0.00017 40.1 9.6 43 111-155 132-174 (376)
116 TIGR03736 PRTRC_ThiF PRTRC sys 82.7 1.7 3.7E-05 43.0 4.5 45 112-156 9-61 (244)
117 PLN00141 Tic62-NAD(P)-related 82.6 20 0.00043 34.1 11.6 103 113-236 16-129 (251)
118 PF00289 CPSase_L_chain: Carba 82.6 1.5 3.2E-05 38.2 3.6 100 115-235 3-104 (110)
119 TIGR00441 gmhA phosphoheptose 82.5 18 0.00039 32.6 10.8 102 113-241 10-117 (154)
120 TIGR02853 spore_dpaA dipicolin 82.4 4.6 9.9E-05 40.6 7.5 72 111-210 148-219 (287)
121 TIGR01082 murC UDP-N-acetylmur 82.4 7.9 0.00017 40.7 9.5 82 116-235 1-87 (448)
122 PTZ00345 glycerol-3-phosphate 81.9 3.3 7.1E-05 43.3 6.4 39 111-149 8-52 (365)
123 cd05297 GH4_alpha_glucosidase_ 81.6 3.3 7.2E-05 43.7 6.4 84 115-213 1-87 (423)
124 PLN00112 malate dehydrogenase 81.6 7.9 0.00017 41.7 9.2 80 112-215 98-191 (444)
125 TIGR01381 E1_like_apg7 E1-like 81.5 3.7 8E-05 46.1 6.9 41 113-155 337-377 (664)
126 PRK00414 gmhA phosphoheptose i 81.2 21 0.00046 33.6 11.1 100 113-240 43-148 (192)
127 PRK07411 hypothetical protein; 81.2 3.4 7.4E-05 43.3 6.3 108 109-234 33-157 (390)
128 TIGR02717 AcCoA-syn-alpha acet 81.2 12 0.00025 40.0 10.3 95 112-245 5-103 (447)
129 PRK13936 phosphoheptose isomer 81.2 23 0.00049 33.5 11.3 101 113-240 42-148 (197)
130 PRK07878 molybdopterin biosynt 81.1 3.1 6.7E-05 43.6 5.9 43 111-155 39-81 (392)
131 cd05213 NAD_bind_Glutamyl_tRNA 81.0 28 0.0006 35.1 12.5 123 112-284 176-301 (311)
132 TIGR01081 mpl UDP-N-acetylmura 80.9 8.5 0.00018 40.5 9.2 31 116-148 1-31 (448)
133 PF01408 GFO_IDH_MocA: Oxidore 80.9 10 0.00022 31.7 8.0 94 115-243 1-97 (120)
134 PRK06545 prephenate dehydrogen 80.2 4.3 9.3E-05 41.8 6.5 36 116-152 2-37 (359)
135 PRK14106 murD UDP-N-acetylmura 79.9 12 0.00026 39.0 9.8 34 113-149 4-37 (450)
136 TIGR03589 PseB UDP-N-acetylglu 79.9 35 0.00076 34.1 12.8 104 114-237 4-123 (324)
137 PRK14619 NAD(P)H-dependent gly 79.9 3.4 7.4E-05 41.3 5.6 34 113-149 3-36 (308)
138 PRK05600 thiamine biosynthesis 79.9 4 8.6E-05 42.6 6.2 45 109-155 36-80 (370)
139 COG1179 Dinucleotide-utilizing 79.8 2.2 4.7E-05 42.7 4.0 41 113-155 29-69 (263)
140 PLN02695 GDP-D-mannose-3',5'-e 79.5 16 0.00035 37.3 10.5 96 113-232 20-130 (370)
141 cd01489 Uba2_SUMO Ubiquitin ac 79.5 5.4 0.00012 40.9 6.9 38 116-155 1-38 (312)
142 PRK14573 bifunctional D-alanyl 79.1 10 0.00022 43.2 9.7 82 116-235 6-92 (809)
143 COG1748 LYS9 Saccharopine dehy 79.0 6.1 0.00013 41.8 7.2 94 115-236 2-98 (389)
144 cd01487 E1_ThiF_like E1_ThiF_l 78.9 4.3 9.4E-05 37.6 5.6 36 116-153 1-36 (174)
145 TIGR03026 NDP-sugDHase nucleot 78.9 6.5 0.00014 41.0 7.5 38 115-155 1-38 (411)
146 PLN02353 probable UDP-glucose 78.8 3.4 7.4E-05 44.5 5.5 81 115-210 2-88 (473)
147 PRK00141 murD UDP-N-acetylmura 78.7 9.8 0.00021 40.6 8.9 92 111-235 12-103 (473)
148 cd01080 NAD_bind_m-THF_DH_Cycl 78.7 6.1 0.00013 36.8 6.5 34 111-147 41-75 (168)
149 PRK13304 L-aspartate dehydroge 78.5 8.9 0.00019 37.9 7.9 89 115-236 2-91 (265)
150 PRK01710 murD UDP-N-acetylmura 78.4 13 0.00029 39.2 9.7 32 114-148 14-45 (458)
151 PLN00016 RNA-binding protein; 78.3 83 0.0018 32.1 16.3 36 112-150 50-90 (378)
152 PLN02545 3-hydroxybutyryl-CoA 78.2 9.5 0.00021 37.7 8.1 37 115-154 5-41 (295)
153 cd05197 GH4_glycoside_hydrolas 78.1 4 8.7E-05 43.4 5.7 75 115-212 1-86 (425)
154 PRK11880 pyrroline-5-carboxyla 78.1 4.7 0.0001 39.1 5.7 40 115-154 3-42 (267)
155 PF01262 AlaDh_PNT_C: Alanine 78.0 2.9 6.4E-05 38.2 4.1 110 111-230 17-130 (168)
156 TIGR00518 alaDH alanine dehydr 78.0 6.7 0.00015 40.8 7.2 75 113-210 166-240 (370)
157 COG1004 Ugd Predicted UDP-gluc 77.9 9.2 0.0002 40.8 8.1 97 115-228 1-105 (414)
158 TIGR01758 MDH_euk_cyt malate d 77.8 15 0.00033 37.6 9.6 85 116-215 1-90 (324)
159 PF02056 Glyco_hydro_4: Family 77.6 3.4 7.4E-05 39.3 4.5 73 116-211 1-84 (183)
160 PRK12491 pyrroline-5-carboxyla 77.5 5.4 0.00012 39.6 6.1 41 115-155 3-44 (272)
161 PF03446 NAD_binding_2: NAD bi 77.5 4.4 9.4E-05 36.8 5.0 38 115-155 2-39 (163)
162 TIGR01408 Ube1 ubiquitin-activ 77.4 11 0.00023 44.6 9.3 43 111-155 21-63 (1008)
163 PRK09424 pntA NAD(P) transhydr 77.2 9.6 0.00021 41.7 8.3 41 112-155 163-203 (509)
164 PRK09496 trkA potassium transp 77.1 13 0.00028 38.6 9.1 98 113-237 230-330 (453)
165 TIGR01771 L-LDH-NAD L-lactate 77.0 13 0.00029 37.5 8.8 97 119-242 1-117 (299)
166 PRK02006 murD UDP-N-acetylmura 76.8 18 0.00039 38.6 10.2 32 114-148 7-38 (498)
167 PRK13940 glutamyl-tRNA reducta 76.7 7.6 0.00016 41.2 7.3 75 111-210 178-252 (414)
168 PRK07679 pyrroline-5-carboxyla 75.9 7.1 0.00015 38.4 6.4 36 113-148 2-38 (279)
169 PRK04663 murD UDP-N-acetylmura 75.7 14 0.0003 38.9 8.9 33 115-148 8-40 (438)
170 COG0771 MurD UDP-N-acetylmuram 75.1 11 0.00024 40.6 8.1 90 113-236 6-99 (448)
171 PRK07178 pyruvate carboxylase 75.1 10 0.00022 40.5 7.8 99 115-235 3-103 (472)
172 PRK14851 hypothetical protein; 74.9 7 0.00015 44.1 6.7 114 110-236 39-166 (679)
173 cd01486 Apg7 Apg7 is an E1-lik 74.8 7 0.00015 40.2 6.2 38 116-155 1-38 (307)
174 PRK04207 glyceraldehyde-3-phos 74.8 15 0.00032 37.9 8.6 32 115-148 2-33 (341)
175 PRK09260 3-hydroxybutyryl-CoA 74.8 7.3 0.00016 38.5 6.2 38 115-155 2-39 (288)
176 TIGR01763 MalateDH_bact malate 74.7 39 0.00084 34.2 11.4 32 115-148 2-33 (305)
177 PRK07502 cyclohexadienyl dehyd 74.4 7.3 0.00016 38.8 6.2 40 115-155 7-46 (307)
178 PRK11908 NAD-dependent epimera 74.0 22 0.00048 35.5 9.5 78 115-212 2-80 (347)
179 TIGR03483 FtsZ_alphas_C cell d 73.9 1.4 3E-05 39.4 0.8 17 407-423 104-120 (121)
180 PRK00094 gpsA NAD(P)H-dependen 73.7 5.8 0.00013 39.2 5.2 37 115-154 2-38 (325)
181 PRK05294 carB carbamoyl phosph 73.7 69 0.0015 38.0 14.7 97 113-235 6-117 (1066)
182 PRK11559 garR tartronate semia 73.7 4.5 9.8E-05 39.8 4.4 37 115-154 3-39 (296)
183 PRK05441 murQ N-acetylmuramic 73.6 24 0.00052 35.7 9.7 39 198-242 129-170 (299)
184 cd01490 Ube1_repeat2 Ubiquitin 73.6 9.5 0.00021 40.9 7.1 41 116-156 1-44 (435)
185 PF04321 RmlD_sub_bind: RmlD s 73.4 22 0.00049 35.1 9.3 30 115-147 1-31 (286)
186 PLN02206 UDP-glucuronate decar 73.3 1.3E+02 0.0029 32.0 20.3 35 111-148 116-151 (442)
187 PLN02819 lysine-ketoglutarate 73.3 20 0.00044 42.5 10.1 93 114-234 569-676 (1042)
188 PRK08300 acetaldehyde dehydrog 73.3 6.9 0.00015 40.0 5.7 97 113-242 3-104 (302)
189 PF13580 SIS_2: SIS domain; PD 73.3 24 0.00051 31.3 8.5 39 193-237 94-137 (138)
190 PRK04148 hypothetical protein; 73.0 7.9 0.00017 35.2 5.4 98 114-245 17-114 (134)
191 PRK01438 murD UDP-N-acetylmura 73.0 20 0.00043 37.9 9.3 33 113-148 15-47 (480)
192 PF13380 CoA_binding_2: CoA bi 72.8 25 0.00053 30.5 8.3 96 116-235 2-107 (116)
193 PRK12815 carB carbamoyl phosph 72.2 1.5E+02 0.0032 35.5 16.9 97 113-235 6-117 (1068)
194 PTZ00431 pyrroline carboxylate 72.2 5.9 0.00013 38.8 4.8 37 113-149 2-39 (260)
195 TIGR03466 HpnA hopanoid-associ 72.2 46 0.00099 32.2 11.0 73 115-210 1-74 (328)
196 TIGR01505 tartro_sem_red 2-hyd 72.1 5.3 0.00011 39.4 4.5 37 116-155 1-37 (291)
197 PF01118 Semialdhyde_dh: Semia 72.1 6.4 0.00014 33.9 4.5 89 116-236 1-96 (121)
198 PRK08462 biotin carboxylase; V 72.1 12 0.00025 39.3 7.3 99 114-235 4-106 (445)
199 PRK08818 prephenate dehydrogen 71.7 6.4 0.00014 41.2 5.2 33 114-148 4-37 (370)
200 PRK14618 NAD(P)H-dependent gly 71.4 9.5 0.00021 38.3 6.2 37 114-153 4-40 (328)
201 PRK08306 dipicolinate synthase 70.9 10 0.00022 38.2 6.2 40 112-154 150-189 (296)
202 PRK15059 tartronate semialdehy 70.9 6.5 0.00014 39.4 4.8 33 115-150 1-33 (292)
203 TIGR00514 accC acetyl-CoA carb 70.8 18 0.00039 38.1 8.3 100 115-235 3-104 (449)
204 cd01078 NAD_bind_H4MPT_DH NADP 70.7 56 0.0012 30.2 10.7 38 113-153 27-65 (194)
205 PRK13938 phosphoheptose isomer 70.4 59 0.0013 31.0 11.0 101 113-240 44-150 (196)
206 PRK13937 phosphoheptose isomer 70.4 44 0.00096 31.2 10.0 102 113-241 37-144 (188)
207 TIGR01087 murD UDP-N-acetylmur 70.3 26 0.00057 36.4 9.4 30 116-148 1-30 (433)
208 COG0373 HemA Glutamyl-tRNA red 69.8 13 0.00028 39.8 6.9 65 112-208 176-246 (414)
209 KOG1495 Lactate dehydrogenase 69.6 12 0.00026 38.3 6.3 38 112-149 18-56 (332)
210 PRK13660 hypothetical protein; 69.2 14 0.00031 35.2 6.4 73 192-267 33-106 (182)
211 PLN00203 glutamyl-tRNA reducta 68.8 17 0.00036 39.9 7.7 41 112-154 264-304 (519)
212 PRK00258 aroE shikimate 5-dehy 67.2 10 0.00023 37.5 5.4 106 112-242 121-226 (278)
213 cd05014 SIS_Kpsf KpsF-like pro 67.0 62 0.0013 27.4 9.5 39 201-242 48-86 (128)
214 PF01210 NAD_Gly3P_dh_N: NAD-d 66.9 20 0.00043 32.4 6.7 35 116-153 1-35 (157)
215 KOG0409 Predicted dehydrogenas 66.9 18 0.0004 37.3 7.1 42 107-151 28-69 (327)
216 PRK07877 hypothetical protein; 66.9 14 0.00031 42.1 6.9 106 110-235 103-226 (722)
217 PRK08125 bifunctional UDP-gluc 66.8 33 0.00071 38.2 9.7 92 102-213 303-395 (660)
218 TIGR01369 CPSaseII_lrg carbamo 66.8 1.6E+02 0.0035 35.0 15.7 97 113-235 5-116 (1050)
219 PRK05671 aspartate-semialdehyd 66.7 33 0.00072 35.4 9.1 90 115-235 5-95 (336)
220 PRK03369 murD UDP-N-acetylmura 66.6 28 0.00061 37.3 8.9 88 114-235 12-99 (488)
221 PF00670 AdoHcyase_NAD: S-aden 66.2 16 0.00034 34.3 6.0 39 112-153 21-59 (162)
222 PRK12548 shikimate 5-dehydroge 66.2 13 0.00028 37.2 5.8 113 113-242 125-241 (289)
223 COG0702 Predicted nucleoside-d 65.9 1.2E+02 0.0026 28.5 18.2 201 115-347 1-217 (275)
224 COG0451 WcaG Nucleoside-diphos 65.2 1.3E+02 0.0029 28.8 19.3 32 116-150 2-34 (314)
225 cd01075 NAD_bind_Leu_Phe_Val_D 65.1 13 0.00028 35.3 5.3 42 111-155 25-66 (200)
226 PRK12480 D-lactate dehydrogena 64.9 14 0.00031 37.8 6.0 37 111-150 143-179 (330)
227 COG2084 MmsB 3-hydroxyisobutyr 64.9 14 0.0003 37.6 5.8 35 115-152 1-35 (286)
228 PRK04308 murD UDP-N-acetylmura 64.8 56 0.0012 34.3 10.5 32 114-148 5-36 (445)
229 PRK03659 glutathione-regulated 64.7 14 0.0003 40.9 6.3 97 114-237 400-498 (601)
230 PRK10669 putative cation:proto 64.7 19 0.00041 39.2 7.2 98 114-238 417-516 (558)
231 COG0476 ThiF Dinucleotide-util 64.3 23 0.00049 34.4 7.1 46 109-156 25-70 (254)
232 PRK15057 UDP-glucose 6-dehydro 64.3 17 0.00036 38.2 6.5 38 115-156 1-38 (388)
233 PRK05472 redox-sensing transcr 64.0 56 0.0012 31.0 9.5 88 114-234 84-174 (213)
234 PTZ00245 ubiquitin activating 63.8 22 0.00047 36.2 6.8 42 111-154 23-64 (287)
235 PRK08507 prephenate dehydrogen 63.7 12 0.00025 36.8 4.9 40 115-155 1-40 (275)
236 PRK01390 murD UDP-N-acetylmura 63.5 23 0.00049 37.3 7.3 32 114-148 9-40 (460)
237 PF02826 2-Hacid_dh_C: D-isome 63.5 11 0.00024 34.7 4.5 74 109-213 31-104 (178)
238 cd05007 SIS_Etherase N-acetylm 62.9 92 0.002 30.8 11.1 39 198-242 116-157 (257)
239 TIGR00036 dapB dihydrodipicoli 62.6 44 0.00096 33.1 8.8 100 115-243 2-104 (266)
240 TIGR01850 argC N-acetyl-gamma- 62.2 29 0.00062 35.8 7.7 103 115-244 1-105 (346)
241 TIGR02198 rfaE_dom_I rfaE bifu 61.8 1E+02 0.0022 30.2 11.2 47 188-234 131-177 (315)
242 PRK08605 D-lactate dehydrogena 61.7 14 0.00031 37.7 5.3 37 111-149 143-179 (332)
243 COG1023 Gnd Predicted 6-phosph 61.3 11 0.00023 38.2 4.1 38 115-155 1-38 (300)
244 cd05006 SIS_GmhA Phosphoheptos 61.3 1.2E+02 0.0026 27.6 10.9 43 196-241 97-139 (177)
245 PRK03806 murD UDP-N-acetylmura 61.2 41 0.00089 35.1 8.7 32 114-148 6-37 (438)
246 TIGR01035 hemA glutamyl-tRNA r 61.2 28 0.00062 36.7 7.6 39 112-152 178-216 (417)
247 PRK12320 hypothetical protein; 60.5 35 0.00077 38.8 8.5 183 115-346 1-201 (699)
248 PRK02472 murD UDP-N-acetylmura 60.1 68 0.0015 33.4 10.1 32 114-148 5-36 (447)
249 PRK06182 short chain dehydroge 60.1 46 0.001 31.8 8.3 83 114-212 3-86 (273)
250 TIGR01809 Shik-DH-AROM shikima 60.1 36 0.00079 33.9 7.7 37 113-151 124-160 (282)
251 PRK12829 short chain dehydroge 60.0 43 0.00094 31.4 7.9 87 113-214 10-100 (264)
252 PRK13398 3-deoxy-7-phosphohept 60.0 1.7E+02 0.0036 29.4 12.4 56 204-264 28-88 (266)
253 TIGR01470 cysG_Nterm siroheme 60.0 32 0.00069 32.9 7.1 88 112-233 7-97 (205)
254 KOG2018 Predicted dinucleotide 60.0 9.5 0.00021 39.8 3.6 38 116-155 76-113 (430)
255 KOG1494 NAD-dependent malate d 59.8 28 0.0006 36.0 6.8 79 111-215 25-111 (345)
256 cd05015 SIS_PGI_1 Phosphogluco 59.6 1.1E+02 0.0024 27.8 10.2 38 115-152 21-62 (158)
257 PRK10538 malonic semialdehyde 59.6 33 0.00072 32.3 7.1 83 115-211 1-85 (248)
258 PLN02383 aspartate semialdehyd 59.4 52 0.0011 34.1 8.9 94 112-236 5-99 (344)
259 PF13241 NAD_binding_7: Putati 58.9 11 0.00025 31.7 3.4 85 112-234 5-89 (103)
260 cd05311 NAD_bind_2_malic_enz N 58.7 15 0.00033 35.6 4.6 38 112-149 23-60 (226)
261 COG0287 TyrA Prephenate dehydr 58.5 19 0.00042 36.3 5.5 40 114-154 3-42 (279)
262 PRK00436 argC N-acetyl-gamma-g 58.2 29 0.00063 35.7 6.8 102 115-244 3-105 (343)
263 PRK11199 tyrA bifunctional cho 58.1 26 0.00057 36.4 6.6 33 113-148 97-130 (374)
264 PRK15181 Vi polysaccharide bio 57.9 58 0.0013 32.8 8.9 97 114-232 15-134 (348)
265 PRK07417 arogenate dehydrogena 57.9 18 0.00039 35.6 5.2 38 115-155 1-38 (279)
266 PRK15182 Vi polysaccharide bio 57.9 20 0.00042 38.1 5.7 41 112-156 4-44 (425)
267 PRK08655 prephenate dehydrogen 57.6 18 0.0004 38.4 5.5 35 115-152 1-36 (437)
268 PF02737 3HCDH_N: 3-hydroxyacy 57.5 17 0.00037 33.8 4.7 37 116-155 1-37 (180)
269 TIGR01124 ilvA_2Cterm threonin 57.4 1.9E+02 0.0041 31.6 13.2 43 192-237 157-200 (499)
270 PRK14874 aspartate-semialdehyd 57.3 57 0.0012 33.3 8.8 89 115-234 2-91 (334)
271 PLN02214 cinnamoyl-CoA reducta 57.3 1.1E+02 0.0025 30.7 10.9 97 114-231 10-119 (342)
272 PRK04690 murD UDP-N-acetylmura 57.1 79 0.0017 33.8 10.1 34 113-149 7-40 (468)
273 TIGR01181 dTDP_gluc_dehyt dTDP 57.0 39 0.00084 32.4 7.2 31 116-147 1-32 (317)
274 PRK08463 acetyl-CoA carboxylas 57.0 48 0.001 35.5 8.5 97 115-235 3-103 (478)
275 PRK05476 S-adenosyl-L-homocyst 56.9 23 0.00049 38.0 5.9 37 113-152 211-247 (425)
276 PRK03562 glutathione-regulated 56.4 25 0.00054 39.1 6.4 90 114-230 400-489 (621)
277 PRK08040 putative semialdehyde 56.2 29 0.00062 36.0 6.4 93 113-236 3-96 (336)
278 PF14084 DUF4264: Protein of u 56.2 26 0.00056 27.2 4.5 37 338-376 14-50 (52)
279 TIGR01408 Ube1 ubiquitin-activ 56.1 24 0.00052 41.7 6.5 44 113-156 418-464 (1008)
280 PLN02260 probable rhamnose bio 55.6 85 0.0018 34.8 10.4 125 73-238 336-481 (668)
281 PRK03803 murD UDP-N-acetylmura 55.6 44 0.00095 35.1 7.8 31 115-148 7-37 (448)
282 PRK14982 acyl-ACP reductase; P 55.3 40 0.00086 35.1 7.3 73 111-211 152-226 (340)
283 TIGR03376 glycerol3P_DH glycer 55.3 19 0.00041 37.3 4.9 32 116-147 1-39 (342)
284 PRK00045 hemA glutamyl-tRNA re 54.9 44 0.00096 35.3 7.7 40 112-153 180-219 (423)
285 PLN02896 cinnamyl-alcohol dehy 54.8 83 0.0018 31.5 9.4 80 113-213 9-92 (353)
286 PRK10675 UDP-galactose-4-epime 54.7 1.4E+02 0.0031 29.3 10.9 30 115-147 1-31 (338)
287 PRK03868 glucose-6-phosphate i 54.3 96 0.0021 33.0 10.1 40 115-154 59-102 (410)
288 PLN02662 cinnamyl-alcohol dehy 54.2 46 0.00099 32.5 7.3 33 114-149 4-37 (322)
289 COG1064 AdhP Zn-dependent alco 53.9 26 0.00057 36.5 5.7 93 113-235 166-258 (339)
290 PRK06057 short chain dehydroge 53.9 57 0.0012 30.8 7.7 84 112-211 5-90 (255)
291 PTZ00314 inosine-5'-monophosph 53.8 1.3E+02 0.0028 32.9 11.1 35 111-148 226-261 (495)
292 COG0240 GpsA Glycerol-3-phosph 53.7 1.6E+02 0.0034 30.8 11.2 112 115-249 2-116 (329)
293 TIGR01761 thiaz-red thiazoliny 53.3 1.5E+02 0.0033 30.8 11.1 96 113-242 2-100 (343)
294 TIGR03598 GTPase_YsxC ribosome 53.1 1.7E+02 0.0037 26.2 13.9 117 111-244 15-143 (179)
295 TIGR03215 ac_ald_DH_ac acetald 53.1 49 0.0011 33.6 7.4 92 115-242 2-98 (285)
296 PRK07530 3-hydroxybutyryl-CoA 53.1 23 0.00051 34.9 5.1 38 115-155 5-42 (292)
297 PRK06111 acetyl-CoA carboxylas 53.1 78 0.0017 33.0 9.2 99 115-234 3-103 (450)
298 COG4015 Predicted dinucleotide 52.9 40 0.00086 32.3 6.2 29 115-143 19-47 (217)
299 PLN02778 3,5-epimerase/4-reduc 52.8 1.1E+02 0.0024 30.3 9.8 24 114-137 9-33 (298)
300 KOG0685 Flavin-containing amin 52.4 16 0.00035 39.8 3.9 64 113-180 20-85 (498)
301 PLN02274 inosine-5'-monophosph 52.3 1.6E+02 0.0035 32.2 11.6 36 110-148 232-268 (505)
302 PRK07774 short chain dehydroge 52.2 76 0.0016 29.5 8.1 86 114-213 6-96 (250)
303 PF06908 DUF1273: Protein of u 52.1 14 0.0003 34.9 3.1 75 191-267 32-106 (177)
304 PRK07326 short chain dehydroge 52.0 66 0.0014 29.7 7.6 82 114-210 6-92 (237)
305 PRK08654 pyruvate carboxylase 51.2 71 0.0015 34.7 8.7 98 115-235 3-104 (499)
306 TIGR01296 asd_B aspartate-semi 51.0 60 0.0013 33.4 7.8 88 116-234 1-89 (339)
307 COG4565 CitB Response regulato 50.6 83 0.0018 31.2 8.2 99 137-260 22-121 (224)
308 cd05005 SIS_PHI Hexulose-6-pho 50.6 1E+02 0.0022 28.1 8.6 39 201-242 76-114 (179)
309 TIGR01546 GAPDH-II_archae glyc 50.5 83 0.0018 32.7 8.7 33 117-151 1-34 (333)
310 PRK07825 short chain dehydroge 50.4 73 0.0016 30.4 7.9 84 114-212 5-90 (273)
311 PLN02989 cinnamyl-alcohol dehy 50.3 63 0.0014 31.7 7.6 31 114-147 5-36 (325)
312 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.2 1.1E+02 0.0023 25.8 8.1 37 202-241 48-84 (126)
313 COG0552 FtsY Signal recognitio 50.2 27 0.00058 36.5 5.0 82 114-206 139-227 (340)
314 TIGR01918 various_sel_PB selen 50.1 81 0.0018 34.1 8.7 76 187-264 321-425 (431)
315 PRK07831 short chain dehydroge 50.1 1.4E+02 0.003 28.2 9.7 85 113-211 16-108 (262)
316 PRK08591 acetyl-CoA carboxylas 49.9 74 0.0016 33.3 8.4 100 115-235 3-104 (451)
317 PRK07523 gluconate 5-dehydroge 49.9 60 0.0013 30.5 7.1 87 112-212 8-99 (255)
318 cd06353 PBP1_BmpA_Med_like Per 49.7 35 0.00075 33.3 5.6 48 175-237 160-207 (258)
319 PRK09224 threonine dehydratase 49.6 2.7E+02 0.0058 30.4 12.8 39 325-365 299-337 (504)
320 PRK06179 short chain dehydroge 49.5 1.2E+02 0.0027 28.7 9.2 80 115-212 5-85 (270)
321 PRK06841 short chain dehydroge 49.4 1.1E+02 0.0023 28.7 8.7 87 112-212 13-101 (255)
322 COG2910 Putative NADH-flavin r 49.4 2.7E+02 0.0058 27.4 12.9 35 115-152 1-36 (211)
323 PRK05653 fabG 3-ketoacyl-(acyl 49.4 1.3E+02 0.0028 27.5 9.1 85 114-213 5-95 (246)
324 PLN02650 dihydroflavonol-4-red 48.8 2.3E+02 0.0049 28.3 11.4 32 113-147 4-36 (351)
325 cd01129 PulE-GspE PulE/GspE Th 48.8 79 0.0017 31.3 8.0 107 189-311 67-173 (264)
326 TIGR01917 gly_red_sel_B glycin 48.3 1E+02 0.0022 33.4 9.0 74 189-264 323-425 (431)
327 PTZ00075 Adenosylhomocysteinas 47.8 45 0.00097 36.4 6.5 38 111-151 251-288 (476)
328 PRK06523 short chain dehydroge 47.7 1.8E+02 0.004 27.3 10.0 81 112-211 7-88 (260)
329 PRK14806 bifunctional cyclohex 47.7 37 0.0008 38.1 6.1 38 115-153 4-41 (735)
330 cd01493 APPBP1_RUB Ubiquitin a 47.4 52 0.0011 35.2 6.9 37 112-150 18-54 (425)
331 PRK12367 short chain dehydroge 47.2 75 0.0016 30.6 7.4 81 108-211 8-90 (245)
332 COG1105 FruK Fructose-1-phosph 47.1 1.1E+02 0.0023 31.7 8.8 55 180-234 109-163 (310)
333 PRK05866 short chain dehydroge 47.0 1.3E+02 0.0028 29.6 9.1 86 113-212 39-129 (293)
334 COG0773 MurC UDP-N-acetylmuram 46.8 92 0.002 33.9 8.6 83 116-234 9-94 (459)
335 PRK07819 3-hydroxybutyryl-CoA 46.7 30 0.00066 34.5 4.8 38 115-155 6-43 (286)
336 PRK13508 tagatose-6-phosphate 46.4 1E+02 0.0023 30.3 8.5 46 190-235 116-161 (309)
337 PRK06130 3-hydroxybutyryl-CoA 46.3 31 0.00066 34.3 4.7 38 115-155 5-42 (311)
338 PRK05784 phosphoribosylamine-- 46.3 1.4E+02 0.0029 32.6 9.9 33 115-148 1-33 (486)
339 PTZ00468 phosphofructokinase f 46.3 1.5E+02 0.0032 36.4 10.8 84 174-265 172-270 (1328)
340 TIGR01745 asd_gamma aspartate- 46.2 50 0.0011 34.8 6.4 88 115-232 1-90 (366)
341 PLN02253 xanthoxin dehydrogena 46.1 1.2E+02 0.0026 29.0 8.7 87 112-212 16-106 (280)
342 PLN03139 formate dehydrogenase 46.0 22 0.00047 37.6 3.8 36 110-148 195-230 (386)
343 TIGR01231 lacC tagatose-6-phos 46.0 1.1E+02 0.0025 30.0 8.6 46 191-236 117-162 (309)
344 PRK13243 glyoxylate reductase; 45.9 26 0.00056 35.9 4.2 36 111-149 147-182 (333)
345 PRK12826 3-ketoacyl-(acyl-carr 45.9 1.9E+02 0.0041 26.6 9.7 85 114-213 6-96 (251)
346 PRK12490 6-phosphogluconate de 45.9 33 0.00071 34.3 4.8 37 115-154 1-37 (299)
347 KOG1203 Predicted dehydrogenas 45.8 4.2E+02 0.0091 28.6 13.4 32 106-137 71-103 (411)
348 PLN02494 adenosylhomocysteinas 45.8 42 0.00092 36.6 5.9 36 113-151 253-288 (477)
349 PRK15469 ghrA bifunctional gly 45.7 28 0.00061 35.4 4.4 72 111-214 133-204 (312)
350 PRK06194 hypothetical protein; 45.6 1.1E+02 0.0023 29.4 8.2 86 114-213 6-96 (287)
351 PRK07067 sorbitol dehydrogenas 45.6 97 0.0021 29.1 7.8 84 114-211 6-91 (257)
352 PRK15418 transcriptional regul 45.5 43 0.00093 34.3 5.7 104 188-316 189-301 (318)
353 PLN02686 cinnamoyl-CoA reducta 45.5 1.2E+02 0.0025 31.1 8.9 34 111-147 50-84 (367)
354 COG0796 MurI Glutamate racemas 45.5 3.5E+02 0.0075 27.6 12.1 97 113-242 4-101 (269)
355 COG0281 SfcA Malic enzyme [Ene 45.4 40 0.00086 36.3 5.5 37 112-148 197-233 (432)
356 cd01172 RfaE_like RfaE encodes 45.4 2.2E+02 0.0048 27.5 10.5 44 191-234 125-168 (304)
357 PRK06035 3-hydroxyacyl-CoA deh 45.2 32 0.00069 34.0 4.6 38 115-155 4-41 (291)
358 PRK12384 sorbitol-6-phosphate 45.1 98 0.0021 29.1 7.7 84 116-213 4-94 (259)
359 cd06557 KPHMT-like Ketopantoat 45.0 1E+02 0.0022 30.8 8.1 116 180-298 50-204 (254)
360 PRK09599 6-phosphogluconate de 45.0 34 0.00073 34.1 4.8 37 115-154 1-37 (301)
361 PRK06180 short chain dehydroge 44.8 1.3E+02 0.0028 28.9 8.7 83 115-211 5-89 (277)
362 PRK07232 bifunctional malic en 44.8 36 0.00078 39.1 5.5 38 112-149 183-220 (752)
363 PRK06436 glycerate dehydrogena 44.6 36 0.00079 34.6 5.0 68 111-213 119-186 (303)
364 COG1171 IlvA Threonine dehydra 44.5 89 0.0019 32.8 7.8 154 194-363 168-341 (347)
365 PRK10436 hypothetical protein; 44.4 94 0.002 33.7 8.3 107 189-314 205-314 (462)
366 PRK08217 fabG 3-ketoacyl-(acyl 44.4 1.5E+02 0.0032 27.4 8.8 83 114-210 5-92 (253)
367 PRK06949 short chain dehydroge 44.3 1.1E+02 0.0024 28.5 8.0 84 112-210 7-96 (258)
368 PRK13403 ketol-acid reductoiso 44.0 35 0.00076 35.6 4.8 69 111-210 13-81 (335)
369 cd05710 SIS_1 A subgroup of th 43.6 1.9E+02 0.0041 24.8 8.7 38 202-242 49-86 (120)
370 TIGR01142 purT phosphoribosylg 43.5 53 0.0012 33.3 6.0 34 116-152 1-34 (380)
371 TIGR01777 yfcH conserved hypot 43.5 1.2E+02 0.0027 28.7 8.2 87 117-231 1-102 (292)
372 PRK12862 malic enzyme; Reviewe 43.5 51 0.0011 37.9 6.4 37 113-149 192-228 (763)
373 PLN00198 anthocyanidin reducta 43.5 1E+02 0.0022 30.6 7.9 78 112-211 7-91 (338)
374 KOG2337 Ubiquitin activating E 43.1 98 0.0021 34.5 8.1 108 112-228 338-475 (669)
375 PRK05993 short chain dehydroge 43.0 3.1E+02 0.0068 26.3 11.6 37 115-154 5-42 (277)
376 PRK07074 short chain dehydroge 42.8 1.3E+02 0.0029 28.1 8.3 84 115-212 3-89 (257)
377 TIGR03325 BphB_TodD cis-2,3-di 42.7 1.5E+02 0.0033 28.0 8.7 84 114-211 5-90 (262)
378 PRK12439 NAD(P)H-dependent gly 42.5 2.2E+02 0.0048 29.0 10.4 32 114-147 7-38 (341)
379 TIGR02152 D_ribokin_bact ribok 42.5 1.7E+02 0.0036 28.3 9.1 41 190-234 114-154 (293)
380 PRK06728 aspartate-semialdehyd 42.4 1.3E+02 0.0029 31.4 8.8 33 197-235 65-97 (347)
381 COG2074 2-phosphoglycerate kin 42.4 79 0.0017 32.3 6.8 57 175-234 26-118 (299)
382 PF02254 TrkA_N: TrkA-N domain 42.4 45 0.00097 27.7 4.5 94 117-237 1-96 (116)
383 TIGR02538 type_IV_pilB type IV 42.3 93 0.002 34.3 8.0 109 189-314 303-412 (564)
384 cd00401 AdoHcyase S-adenosyl-L 42.3 50 0.0011 35.3 5.8 40 113-155 201-240 (413)
385 TIGR01832 kduD 2-deoxy-D-gluco 42.3 1.6E+02 0.0035 27.4 8.7 85 113-211 4-91 (248)
386 PRK01368 murD UDP-N-acetylmura 42.1 99 0.0021 33.0 8.0 31 114-148 6-36 (454)
387 PRK12429 3-hydroxybutyrate deh 41.8 1.7E+02 0.0038 27.1 8.8 82 115-211 5-92 (258)
388 PRK07574 formate dehydrogenase 41.6 50 0.0011 34.9 5.6 35 111-148 189-223 (385)
389 PRK06476 pyrroline-5-carboxyla 41.6 40 0.00086 32.7 4.6 39 115-153 1-39 (258)
390 PRK00257 erythronate-4-phospha 41.5 52 0.0011 34.7 5.7 35 111-148 113-147 (381)
391 PF03853 YjeF_N: YjeF-related 41.4 88 0.0019 28.8 6.6 75 182-262 4-80 (169)
392 PRK07806 short chain dehydroge 41.4 2.4E+02 0.0052 26.2 9.7 30 114-146 6-36 (248)
393 PRK05875 short chain dehydroge 41.3 1.6E+02 0.0035 28.0 8.7 37 113-152 6-43 (276)
394 PRK05808 3-hydroxybutyryl-CoA 41.2 44 0.00096 32.8 4.9 37 115-154 4-40 (282)
395 PRK12861 malic enzyme; Reviewe 41.0 45 0.00098 38.4 5.5 38 112-149 187-224 (764)
396 PLN02712 arogenate dehydrogena 40.9 41 0.00089 38.0 5.1 39 108-149 46-84 (667)
397 COG0279 GmhA Phosphoheptose is 40.8 3.1E+02 0.0067 26.3 10.0 97 113-237 40-143 (176)
398 PRK08664 aspartate-semialdehyd 40.7 1.9E+02 0.0041 29.7 9.5 100 114-235 3-105 (349)
399 COG1737 RpiR Transcriptional r 40.6 1.6E+02 0.0035 29.3 8.8 42 198-242 175-216 (281)
400 TIGR02622 CDP_4_6_dhtase CDP-g 40.6 2.6E+02 0.0055 28.0 10.3 31 114-147 4-35 (349)
401 PRK06522 2-dehydropantoate 2-r 40.6 43 0.00093 32.6 4.7 37 115-154 1-37 (304)
402 PRK12936 3-ketoacyl-(acyl-carr 40.5 1.4E+02 0.003 27.5 7.9 85 114-212 6-92 (245)
403 PRK11543 gutQ D-arabinose 5-ph 40.5 1.9E+02 0.0041 28.8 9.3 38 202-242 91-128 (321)
404 PRK07024 short chain dehydroge 40.4 1.6E+02 0.0035 27.8 8.5 85 115-213 3-91 (257)
405 PRK12939 short chain dehydroge 40.3 1.7E+02 0.0037 27.0 8.5 84 114-212 7-96 (250)
406 PRK05678 succinyl-CoA syntheta 40.2 1.9E+02 0.0042 29.4 9.3 90 113-242 7-101 (291)
407 PRK07680 late competence prote 40.2 46 0.00099 32.6 4.8 40 115-154 1-41 (273)
408 PTZ00175 diphthine synthase; P 40.2 2.3E+02 0.005 28.5 9.8 44 191-236 67-110 (270)
409 COG1010 CobJ Precorrin-3B meth 40.2 1.7E+02 0.0036 29.5 8.6 204 116-377 4-209 (249)
410 PRK07097 gluconate 5-dehydroge 40.2 1.7E+02 0.0038 27.7 8.7 86 113-212 9-99 (265)
411 PF10727 Rossmann-like: Rossma 40.1 18 0.00038 32.4 1.7 27 111-137 7-33 (127)
412 PF10087 DUF2325: Uncharacteri 39.9 56 0.0012 27.2 4.6 43 191-236 39-81 (97)
413 TIGR00196 yjeF_cterm yjeF C-te 39.9 1.8E+02 0.0039 28.4 8.9 41 189-233 81-122 (272)
414 PRK08618 ornithine cyclodeamin 39.8 1.4E+02 0.003 30.4 8.3 94 113-236 126-220 (325)
415 PRK08293 3-hydroxybutyryl-CoA 39.5 41 0.00088 33.2 4.4 38 115-155 4-41 (287)
416 COG1062 AdhC Zn-dependent alco 39.5 1.2E+02 0.0026 32.1 7.8 79 113-210 185-264 (366)
417 PRK09242 tropinone reductase; 39.3 1.5E+02 0.0032 27.9 8.0 85 113-211 8-99 (257)
418 PRK06129 3-hydroxyacyl-CoA deh 39.3 44 0.00094 33.4 4.6 37 115-154 3-39 (308)
419 PRK13303 L-aspartate dehydroge 39.0 1.6E+02 0.0035 29.0 8.5 22 115-136 2-23 (265)
420 PRK05867 short chain dehydroge 38.8 1.5E+02 0.0032 27.8 7.9 85 113-211 8-97 (253)
421 PLN02166 dTDP-glucose 4,6-dehy 38.7 1.3E+02 0.0028 31.9 8.2 33 113-148 119-152 (436)
422 KOG2336 Molybdopterin biosynth 38.6 3.8E+02 0.0083 28.0 11.0 127 115-261 83-212 (422)
423 PLN02251 pyrophosphate-depende 38.6 2.7E+02 0.0058 31.2 10.8 55 174-236 166-225 (568)
424 PRK08264 short chain dehydroge 38.5 2.5E+02 0.0054 25.9 9.3 39 114-154 6-45 (238)
425 PRK06198 short chain dehydroge 38.5 2E+02 0.0043 26.9 8.7 85 113-211 5-95 (260)
426 PRK10084 dTDP-glucose 4,6 dehy 38.5 99 0.0022 30.7 7.0 24 115-138 1-25 (352)
427 PRK11337 DNA-binding transcrip 38.3 2.2E+02 0.0048 28.0 9.3 42 198-242 185-226 (292)
428 TIGR01327 PGDH D-3-phosphoglyc 38.2 56 0.0012 35.7 5.5 35 111-148 135-169 (525)
429 PRK08220 2,3-dihydroxybenzoate 37.9 2.5E+02 0.0055 26.0 9.3 78 113-210 7-86 (252)
430 PRK11557 putative DNA-binding 37.9 2.1E+02 0.0047 27.8 9.1 42 198-242 173-214 (278)
431 PRK06830 diphosphate--fructose 37.8 3.5E+02 0.0076 29.3 11.3 171 112-299 78-315 (443)
432 PRK08265 short chain dehydroge 37.8 1.6E+02 0.0034 28.0 8.0 84 114-211 6-91 (261)
433 TIGR00274 N-acetylmuramic acid 37.8 1.7E+02 0.0037 29.6 8.6 39 197-241 123-164 (291)
434 PF01261 AP_endonuc_2: Xylose 37.8 2.2E+02 0.0049 25.3 8.6 110 188-297 26-165 (213)
435 PRK12749 quinate/shikimate deh 37.7 1.1E+02 0.0023 30.9 7.1 35 113-149 123-157 (288)
436 PRK09186 flagellin modificatio 37.6 2.2E+02 0.0048 26.5 8.8 37 114-153 4-41 (256)
437 TIGR01469 cobA_cysG_Cterm urop 37.5 2.4E+02 0.0053 26.6 9.2 104 116-232 1-107 (236)
438 COG2390 DeoR Transcriptional r 37.4 64 0.0014 33.4 5.5 113 179-316 185-304 (321)
439 TIGR01851 argC_other N-acetyl- 37.2 83 0.0018 32.4 6.3 75 115-234 2-77 (310)
440 PRK06482 short chain dehydroge 37.2 1.4E+02 0.0031 28.4 7.7 83 115-212 3-88 (276)
441 PRK06181 short chain dehydroge 37.0 3E+02 0.0065 25.8 9.7 84 115-212 2-90 (263)
442 PF07287 DUF1446: Protein of u 37.0 45 0.00098 35.1 4.4 50 188-238 57-107 (362)
443 PRK00696 sucC succinyl-CoA syn 36.8 4.7E+02 0.01 27.2 11.8 25 114-138 256-281 (388)
444 COG3596 Predicted GTPase [Gene 36.8 4.4E+02 0.0095 27.3 11.1 147 111-267 36-193 (296)
445 PRK03815 murD UDP-N-acetylmura 36.7 2.8E+02 0.0061 29.2 10.3 115 115-242 1-127 (401)
446 PRK08213 gluconate 5-dehydroge 36.6 2.7E+02 0.0058 26.2 9.3 85 113-211 11-100 (259)
447 TIGR03828 pfkB 1-phosphofructo 36.6 3.3E+02 0.0072 26.3 10.2 42 192-233 119-160 (304)
448 cd00758 MoCF_BD MoCF_BD: molyb 36.5 59 0.0013 28.6 4.5 35 192-230 50-84 (133)
449 PRK06249 2-dehydropantoate 2-r 36.5 45 0.00097 33.4 4.2 40 113-154 4-43 (313)
450 COG1712 Predicted dinucleotide 36.4 2.8E+02 0.0061 28.0 9.5 39 115-154 1-40 (255)
451 PRK11544 hycI hydrogenase 3 ma 36.4 55 0.0012 29.9 4.4 38 115-152 1-45 (156)
452 PF02629 CoA_binding: CoA bind 36.1 2.5E+02 0.0054 23.2 8.0 91 114-238 3-94 (96)
453 PRK08410 2-hydroxyacid dehydro 36.0 74 0.0016 32.3 5.7 36 110-148 141-176 (311)
454 PRK05650 short chain dehydroge 36.0 3.1E+02 0.0067 26.0 9.7 83 116-212 2-89 (270)
455 PRK15461 NADH-dependent gamma- 36.0 57 0.0012 32.5 4.8 38 115-155 2-39 (296)
456 PRK05557 fabG 3-ketoacyl-(acyl 35.9 3.4E+02 0.0073 24.8 9.7 85 114-212 5-95 (248)
457 PRK10892 D-arabinose 5-phospha 35.9 1.8E+02 0.004 29.1 8.4 39 201-242 95-133 (326)
458 PRK07060 short chain dehydroge 35.9 1.3E+02 0.0029 27.7 7.0 38 113-153 8-46 (245)
459 PLN02735 carbamoyl-phosphate s 35.8 7.4E+02 0.016 29.9 14.5 39 113-154 573-622 (1102)
460 TIGR01921 DAP-DH diaminopimela 35.5 5.3E+02 0.012 26.8 17.8 224 114-382 3-258 (324)
461 PRK00311 panB 3-methyl-2-oxobu 35.4 2.3E+02 0.0049 28.6 8.9 44 252-298 160-207 (264)
462 PRK05586 biotin carboxylase; V 35.4 1.5E+02 0.0032 31.4 8.0 98 115-235 3-104 (447)
463 cd06259 YdcF-like YdcF-like. Y 35.2 1.2E+02 0.0027 26.4 6.4 60 201-263 35-94 (150)
464 PRK13581 D-3-phosphoglycerate 35.2 66 0.0014 35.1 5.5 35 111-148 137-171 (526)
465 PLN02928 oxidoreductase family 35.0 49 0.0011 34.2 4.3 35 111-148 156-190 (347)
466 PRK07066 3-hydroxybutyryl-CoA 34.9 58 0.0013 33.5 4.7 37 115-154 8-44 (321)
467 COG2243 CobF Precorrin-2 methy 34.8 1.8E+02 0.0038 29.0 7.9 128 173-315 6-142 (234)
468 PRK14095 pgi glucose-6-phospha 34.7 1.9E+02 0.004 32.2 8.8 39 115-154 152-195 (533)
469 PRK02318 mannitol-1-phosphate 34.7 1.1E+02 0.0024 31.8 6.8 100 115-228 1-106 (381)
470 PRK06270 homoserine dehydrogen 34.5 2.6E+02 0.0057 28.7 9.5 22 115-136 3-24 (341)
471 PRK06500 short chain dehydroge 34.5 1.8E+02 0.004 26.8 7.7 83 114-212 6-92 (249)
472 COG1486 CelF Alpha-galactosida 34.4 1.3E+02 0.0028 32.7 7.3 117 113-244 2-176 (442)
473 TIGR03603 cyclo_dehy_ocin bact 34.4 1E+02 0.0023 31.5 6.5 97 112-234 74-182 (318)
474 COG2804 PulE Type II secretory 34.4 1.1E+02 0.0024 33.7 6.9 139 189-347 245-388 (500)
475 PRK07454 short chain dehydroge 34.1 2.8E+02 0.0061 25.6 8.9 83 115-212 7-95 (241)
476 TIGR00197 yjeF_nterm yjeF N-te 34.1 2.9E+02 0.0064 26.3 9.1 53 181-235 25-77 (205)
477 PRK14175 bifunctional 5,10-met 34.1 1.1E+02 0.0024 31.1 6.6 78 111-240 155-233 (286)
478 PRK08263 short chain dehydroge 33.9 1.9E+02 0.0041 27.7 7.9 84 115-212 4-89 (275)
479 PRK15438 erythronate-4-phospha 33.9 76 0.0016 33.5 5.5 34 111-147 113-146 (378)
480 PRK04220 2-phosphoglycerate ki 33.9 1.3E+02 0.0028 30.9 7.0 24 210-233 97-120 (301)
481 cd01832 SGNH_hydrolase_like_1 33.9 3.4E+02 0.0073 24.0 10.3 13 199-211 66-78 (185)
482 TIGR02712 urea_carbox urea car 33.7 1.2E+02 0.0026 36.8 7.7 100 115-235 2-103 (1201)
483 PRK05562 precorrin-2 dehydroge 33.7 1.4E+02 0.0031 29.3 7.0 96 108-236 19-116 (223)
484 cd05191 NAD_bind_amino_acid_DH 33.5 67 0.0014 26.0 4.0 35 112-148 21-55 (86)
485 PRK05717 oxidoreductase; Valid 33.4 2.1E+02 0.0045 26.9 8.0 85 114-212 10-96 (255)
486 TIGR01915 npdG NADPH-dependent 33.3 72 0.0016 30.2 4.8 36 115-153 1-37 (219)
487 PF02608 Bmp: Basic membrane p 33.1 90 0.002 31.2 5.7 47 178-237 172-220 (306)
488 PRK07478 short chain dehydroge 33.1 2.8E+02 0.0061 25.9 8.8 85 114-212 6-95 (254)
489 PRK07340 ornithine cyclodeamin 33.0 1.1E+02 0.0024 30.9 6.3 92 113-236 124-216 (304)
490 KOG2017 Molybdopterin synthase 32.9 38 0.00083 35.9 3.0 39 100-139 53-91 (427)
491 PRK12815 carB carbamoyl phosph 32.9 1.6E+02 0.0035 35.1 8.5 93 113-235 554-659 (1068)
492 PRK06932 glycerate dehydrogena 32.9 62 0.0013 32.9 4.5 34 111-147 144-177 (314)
493 PRK12828 short chain dehydroge 32.7 2.1E+02 0.0044 26.1 7.6 82 114-211 7-93 (239)
494 PRK11142 ribokinase; Provision 32.6 3.3E+02 0.0071 26.4 9.4 41 190-234 122-162 (306)
495 PRK06171 sorbitol-6-phosphate 32.6 3E+02 0.0065 25.9 9.0 80 113-211 8-88 (266)
496 PTZ00142 6-phosphogluconate de 32.5 68 0.0015 34.7 5.0 36 115-153 2-37 (470)
497 PF03610 EIIA-man: PTS system 32.4 52 0.0011 28.1 3.4 53 191-246 44-100 (116)
498 PRK08340 glucose-1-dehydrogena 32.3 1.6E+02 0.0034 27.9 7.0 83 115-211 1-87 (259)
499 PRK06200 2,3-dihydroxy-2,3-dih 32.3 1.7E+02 0.0037 27.6 7.3 84 114-211 6-91 (263)
500 PRK06138 short chain dehydroge 32.3 2E+02 0.0043 26.7 7.6 84 114-211 5-92 (252)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=2.6e-80 Score=632.12 Aligned_cols=267 Identities=61% Similarity=0.977 Sum_probs=261.4
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
.+.++|+||||||||||+||+|++.++++++||++|||.|+|..++ +++||+||+++|+|+|||+||++|++||+++.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~--a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~ 88 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSK--APVKIQLGEKLTRGLGAGANPEVGRKAAEESR 88 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCC--CCeEEEcCCcccccCCCCCCHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999987 48999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc----
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI---- 267 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI---- 267 (430)
++|+++|+++|+|||+||||||||||++|+||++||++|++||+|||+||.|||++|+.+|.++|++|++++|++|
T Consensus 89 e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~N 168 (384)
T PRK09330 89 EEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPN 168 (384)
T ss_pred HHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHh
Q 014098 268 ------------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQ 311 (430)
Q Consensus 268 ------------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~ 311 (430)
.||+||+||+||+++|+++|.|+||+|+++|++|+.+|+++||+
T Consensus 169 d~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~~~G~a~~G~G~a~g~~ra~~A~~~Ai~ 248 (384)
T PRK09330 169 DKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLAMMGIGEASGEDRAREAAEKAIS 248 (384)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHhcCCeEEEEEEEecCccHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999
Q ss_pred CCCCc-CCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeecC
Q 014098 312 SPLLD-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380 (430)
Q Consensus 312 sPLLd-~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATGf 380 (430)
||||+ .++++|+++||||+++++|+|.|++++++.|++.++++++||||+++||+|+++++||||||||
T Consensus 249 spLl~~~~i~~A~~vLv~I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtviatG~ 318 (384)
T PRK09330 249 SPLLEDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELGDEIRVTVIATGF 318 (384)
T ss_pred CcCcCCCChhhcceEEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCcCCeEEEEEEEccC
Confidence 99997 7899999999999999999999999999999999999999999999999999999999999999
No 2
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=1e-73 Score=582.90 Aligned_cols=314 Identities=45% Similarity=0.734 Sum_probs=282.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
....++|+||||||||||+||+|++.++.+++||++|||.|+|..++ +++|++||+++|+|+|+|+||++|+++|+++
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~--a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~ 102 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIK--ADKKILIGKSLTRGLGAGGDPEVGRKAAEES 102 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEecCCccCCCCCCCCChHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999986 4899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc---
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI--- 267 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI--- 267 (430)
.++|+++|+++|+|||+||||||||||++|+|+++||+++++++++||+||.|||++|+++|.++|++|++++|++|
T Consensus 103 ~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vivid 182 (378)
T PRK13018 103 RDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVID 182 (378)
T ss_pred HHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHh
Q 014098 268 ------------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQ 311 (430)
Q Consensus 268 ------------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~ 311 (430)
.||++|+||+||+++|+++|.|+||+|+++|++|+++|+++||+
T Consensus 183 Nd~L~~i~~~~~i~~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~~~G~a~iG~G~a~g~~r~~~Av~~Al~ 262 (378)
T PRK13018 183 NNRLLDIVPNLPIADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVAMMGVGEAKGQNRAMEAVRAALA 262 (378)
T ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhccCCEEEEEEEEecCCcHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999
Q ss_pred CCCCcCCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeecCCCCCCCCCCCc
Q 014098 312 SPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDKLEGKGTH 391 (430)
Q Consensus 312 sPLLd~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATGf~~~~~~~~~~~ 391 (430)
+|||+.++++|+++||||+|+++++|.|+++++++|++.++++++|+||+++||+|+++++||||||||+++.......+
T Consensus 263 spLL~~di~~A~~~Lv~I~g~~~l~l~ev~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~v~VtvIatG~~~~~~~~~~~~ 342 (378)
T PRK13018 263 NPLLDVDYRGAKGALVHITGGPDLTLKEANEAASRITEELDPEANIIWGARIDPDMEGKVRVMVIMTGVKSAQILGPGTQ 342 (378)
T ss_pred CCCcCCChhhhceEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEEeCCCCccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643322211
Q ss_pred cccCCcccccccCCCCCCCCCcccchhhccCCCCCCCC
Q 014098 392 LSHNDVSLGMSRRSSNSGSGSVEIPEFLRQRPHIYHPR 429 (430)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~ip~~lr~~~~~~~~~ 429 (430)
..+........ ...+.+.+.+|.+++.+...++|.
T Consensus 343 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 377 (378)
T PRK13018 343 PQAIISRRSGE---RSRGKDELGIDSIVAHQAGLSFPS 377 (378)
T ss_pred ccccccccccc---ccccccccccchhhhhccCCCCCC
Confidence 11100000000 112234677888887777666653
No 3
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.3e-74 Score=577.02 Aligned_cols=271 Identities=59% Similarity=0.918 Sum_probs=265.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
....+||+||||||||+|+||+|++.++++++|+++|||.|+|..++ +++|++||+.+|+|+|+|+||++|++||+|+
T Consensus 8 ~~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~--a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~ 85 (338)
T COG0206 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSK--ADRKILIGESITRGLGAGANPEVGRAAAEES 85 (338)
T ss_pred cccCceEEEEEeCCcchHHHHHHHHhhhCceEEEEeccCHHHHhccc--cCeEEEeccceeeccCCCCCcHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc---
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI--- 267 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI--- 267 (430)
.++|++.|+++||+||+||||||||||+||+||++||++|++||+|||+||+|||++|+++|.++|++|++++|++|
T Consensus 86 ~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~ 165 (338)
T COG0206 86 IEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIP 165 (338)
T ss_pred HHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHh
Q 014098 268 ------------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQ 311 (430)
Q Consensus 268 ------------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~ 311 (430)
.||+||+||+||+++|+++|.|+||+|+++|++|+.+|+++|++
T Consensus 166 Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~A~mG~g~~~~~~r~~~a~~~A~~ 245 (338)
T COG0206 166 NDKLLKGKDKTPIAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALN 245 (338)
T ss_pred cHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCCceeEEEeeccchhHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999
Q ss_pred CCCCc-CCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeecCCCC
Q 014098 312 SPLLD-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGD 383 (430)
Q Consensus 312 sPLLd-~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATGf~~~ 383 (430)
+|||+ .++++|+++||||+|++||+|.|++++++.|++.++++++|+||.++||++.++|+|++|+||++.+
T Consensus 246 ~pLl~~~~i~gA~~~Lv~i~g~~dl~l~ev~~~~~~i~~~i~~~~~vi~G~~~d~~~~~~v~v~vi~tg~~~~ 318 (338)
T COG0206 246 SPLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEVRVLVIATGIRSS 318 (338)
T ss_pred CCcccccccccccceEEEEecCCccCHHHHHHHHHHHHHHhCCCceEEEccccCCCCCceEEEEEEEecccch
Confidence 99997 8899999999999999999999999999999999999999999999999999999999999999864
No 4
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=100.00 E-value=1.1e-70 Score=556.35 Aligned_cols=275 Identities=54% Similarity=0.884 Sum_probs=265.2
Q ss_pred CCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 108 ~~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
.++...+++|+||||||||||+|++|++.++.+++||++|||.|+|..++ +++|++||++.|+|+|+|+||++|+++|
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~--a~~ki~iG~~~t~G~GaG~~~~~G~~~a 88 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTK--ADKKILIGKKLTRGLGAGGNPEIGRKAA 88 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCC--CCeEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 34455668999999999999999999999999999999999999999987 4899999999999999999999999999
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
+++.++|+++++++|+|||+||||||||||++|+|+++||++++++++|||+||.|||.+|..||..+|++|++++|++|
T Consensus 89 ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vi 168 (349)
T TIGR00065 89 EESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLI 168 (349)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCc---hHHHH
Q 014098 268 ---------------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKS---RARDA 305 (430)
Q Consensus 268 ---------------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~---ra~~A 305 (430)
.||++|+||+||+++|+++|.|+||+|+++|++ |+++|
T Consensus 169 vidNd~L~~~~~~~~i~~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~~~G~a~iG~g~~~g~~~~~r~~~A 248 (349)
T TIGR00065 169 VIPNDKLLEVVPNLPLNDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEALGEDTANRAFEA 248 (349)
T ss_pred EEeCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHhcCCeEEEEEEEecCCcchHHHHHH
Confidence 589999999999999999999999999999999 99999
Q ss_pred HHHHHhCCCCcCC-ccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeecCCCCC
Q 014098 306 ALNAIQSPLLDIG-IETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDK 384 (430)
Q Consensus 306 v~~AL~sPLLd~~-i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATGf~~~~ 384 (430)
+++||++|||+.+ +++|+++|+||+++++++|+|+++++++|++.++++++|+||+++||+|+++++||||||||+.+.
T Consensus 249 ~~~al~~pLl~~~~i~~A~~~Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~G~~~d~~l~~~i~VtiIatG~~~~~ 328 (349)
T TIGR00065 249 VRKALSSPLLDVDKISGAKGALVHITGGADLTLLEAEEIQEIITSELDQDANIIWGAIIDPNLEDEIRVTIVATGVKSQI 328 (349)
T ss_pred HHHHHhCCCcCCcccccccEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCcccCCcEEEEEEEecCCccc
Confidence 9999999999865 999999999999999999999999999999999999999999999999999999999999998763
No 5
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=4.1e-69 Score=534.44 Aligned_cols=263 Identities=64% Similarity=0.986 Sum_probs=256.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
+||+||||||||||+||+|++.++++++||++|||.|+|..++ +++|++||++.|+|+|+|+||++|+++|+++.++|
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~--~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~~~~I 78 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSK--APNKIQLGKELTRGLGAGGDPEVGRKAAEESREEI 78 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999987 48999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc-------
Q 014098 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI------- 267 (430)
Q Consensus 195 ~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI------- 267 (430)
+++++++|+|||+||||||||||++|+|++++|++|+++++|||+||.|||.+|..||.++|++|++++|++|
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L 158 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKL 158 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCC
Q 014098 268 ---------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPL 314 (430)
Q Consensus 268 ---------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPL 314 (430)
.||++|+||+||+++|+++|.++||+|+++|++|+++|+++||++||
T Consensus 159 ~~~~~~~~~i~~af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~G~a~ig~g~~~g~~r~~~Av~~Al~~pL 238 (304)
T cd02201 159 LEVVDKNLPLLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPL 238 (304)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCcC
Confidence 57999999999999999999999999999999999999999999999
Q ss_pred CcC-CccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeec
Q 014098 315 LDI-GIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATG 379 (430)
Q Consensus 315 Ld~-~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATG 379 (430)
|+. ++++|+++||||++++++++.|++++++.|++.++++++|+||+++||+++++++|||||||
T Consensus 239 l~~~~i~~A~~~Lv~I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~~d~~l~~~v~Vtiiatg 304 (304)
T cd02201 239 LEDDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTVIATG 304 (304)
T ss_pred cCCCChhcccEEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCCCCeEEEEEEEeC
Confidence 975 59999999999999999999999999999999999999999999999999999999999998
No 6
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.3e-68 Score=531.79 Aligned_cols=263 Identities=42% Similarity=0.637 Sum_probs=257.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
+||+||||||||||+|++|++.++.+++|+++|||.++|..+. +++|++||+++|+|+|+|+||++|+++|++..++|
T Consensus 1 ~~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L~~~~--a~~ki~iG~~~t~g~GaG~~~~~G~~~a~e~~~~I 78 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLE--AENRVLIGQARTKGLGAGANPELGAEAAEEVQEAI 78 (303)
T ss_pred CEEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHHhcCC--CCcEEecCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999886 58999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc-------
Q 014098 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI------- 267 (430)
Q Consensus 195 ~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI------- 267 (430)
+++++++|+|||+||||||||||++|+|++++|++++++++|||+||.|||..|..||..+|++|++++|++|
T Consensus 79 ~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L 158 (303)
T cd02191 79 DNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKL 158 (303)
T ss_pred HHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCC
Q 014098 268 --------------------------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL 315 (430)
Q Consensus 268 --------------------------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLL 315 (430)
.||++|+||+||+++|+++|.++||+|+++|++|+++|+++||++|||
T Consensus 159 ~~~~~~~~~~~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~~~G~a~ig~g~~~g~~~~~~a~~~Al~~pll 238 (303)
T cd02191 159 RQIGEKASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLL 238 (303)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999999999999999999999
Q ss_pred c-CCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEEeec
Q 014098 316 D-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATG 379 (430)
Q Consensus 316 d-~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvIATG 379 (430)
+ .++++|+++||||+|+++++|+|+++++++|++.++++++|+||++++|+++++++|||||||
T Consensus 239 ~~~~~~~A~~~Lv~i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G~~~~~~~~~~v~v~vi~tg 303 (303)
T cd02191 239 LPCEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIVLTG 303 (303)
T ss_pred CCCCcccCCEEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeeeCCCCCCeEEEEEEecC
Confidence 7 689999999999999999999999999999999999999999999999999999999999998
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1e-57 Score=461.68 Aligned_cols=265 Identities=24% Similarity=0.338 Sum_probs=246.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCc-----ceEEEEeCcHHhhhcC-CCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVS-PVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~g-----ve~iaiNTD~q~L~~s-~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
|||+|||+||||||+|++|++.+.++ ++++++|||.++|+.+ ..++++|+++|++.|+|+|+|+||++|+++|+
T Consensus 1 m~i~viGvGg~G~niv~~l~~~~~~~~~~~~~~~iavntD~~~L~~l~~~~~~~ki~~g~~~t~G~GaG~~~~~G~~~ae 80 (349)
T cd02202 1 MRVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAE 80 (349)
T ss_pred CEEEEEEeCCcHHHHHHHHHHhCCCcCCccceeEEEEECCHHHHHhhhcCCCCCEEEecCcccCCCCCCCChHHHHHHHH
Confidence 68999999999999999999998877 8999999999999864 23468999999999999999999999999999
Q ss_pred HhHHHHHHHhcC-----CCEEEEEccCCCCCCCCcHHHHHHHHHHcC-CcEEEEEeccCCchhHHHHHHHHHHHHHHHHh
Q 014098 189 ESKVAIEEAISG-----ADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIATVPFCFEGRRRAIQAQEGVANLRNN 262 (430)
Q Consensus 189 e~~e~I~~~L~g-----aD~VfI~AGLGGGTGTGaaPvIA~~AKe~g-iltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~ 262 (430)
++.++|++++++ +|++||+||||||||||++|+|++++|+++ +++++++|+||.+||..+..||..+|++|+++
T Consensus 81 e~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~ 160 (349)
T cd02202 81 EDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEE 160 (349)
T ss_pred HHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHh
Confidence 999999999987 889999999999999999999999999985 79999999999999999999999999999999
Q ss_pred hcccc-------------------------------------c-----CccccccHHHHHHHHhhcCeeEEEEEEecC--
Q 014098 263 VDTLI-------------------------------------I-----PGLVNVDFADVRAIMKDAGSSLMGIGTATG-- 298 (430)
Q Consensus 263 vD~lI-------------------------------------~-----pglINvDfaDvk~Il~~~G~A~mGiG~a~G-- 298 (430)
+|++| . ||++|+||+||+++|+++|.++||+|++++
T Consensus 161 ~D~viv~dNd~L~~~~~~~~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~G~~~iG~g~~~~~~ 240 (349)
T cd02202 161 ADAIILFDNDAWKRKGESVEEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGYAREDLET 240 (349)
T ss_pred CCEEEEEehHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccCCeEEEEEEEEcccc
Confidence 99998 1 899999999999999999999999999988
Q ss_pred ---------------------CchHHHHHHHHHhCCCC-cCCccccCceEEEEEeCCC-CCHHHHHHHHHHHHhhcCCCc
Q 014098 299 ---------------------KSRARDAALNAIQSPLL-DIGIETATGIVWNITGGTD-LTLFEVNTAAEVIYDLVDPSA 355 (430)
Q Consensus 299 ---------------------~~ra~~Av~~AL~sPLL-d~~i~~A~gvLvnI~gg~d-l~L~Ev~~a~~~I~~~~~~~a 355 (430)
.+|+.+|+++|+.+||+ +.++++|+++||||+|+++ |+++|++++.++|++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~r~~~a~~~a~~~~L~~~~d~~~A~~~Li~i~g~~~~l~~~~~~~~~~~i~~~~~--- 317 (349)
T cd02202 241 GPSDGKFRLREEDDEVDEKESISRITTLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGRKWLDEEIG--- 317 (349)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHcCCCCCCCCcccCcEEEEEEEeCccccCHHHHHHHHHHHHHHcC---
Confidence 79999999999999998 4899999999999999995 999999999999999997
Q ss_pred cEEEeeeeCCCC-CCeEEEEEEeecCCC
Q 014098 356 NLIFGAVIDKSL-SNQVSITLIATGFKG 382 (430)
Q Consensus 356 ~Ii~G~~ide~l-~d~vrVTvIATGf~~ 382 (430)
.++||...+|.+ .++|+||||||||+.
T Consensus 318 ~~~~~~g~~p~~~~~~v~v~vi~tG~~~ 345 (349)
T cd02202 318 GVEVRSGDYPVPGGDEVAVLVLLSGISE 345 (349)
T ss_pred CeEEEEEecCCCCCCeEEEEEEEcCCCC
Confidence 466666677776 479999999999974
No 8
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.96 E-value=1.1e-29 Score=253.76 Aligned_cols=255 Identities=22% Similarity=0.267 Sum_probs=211.6
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCC-CceEEcCCccCCCCCCCCCchHHHHHHHH-hHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIP-ENRLQIGCDLTRGLGAGGNPSVGMNAANE-SKVA 193 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a-~~ki~iG~~~t~GlGaG~dP~vG~~aA~e-~~e~ 193 (430)
+|++||+||||+|++++|.+.. +++|||.+.|....... ...+.++...+++.|+|+||.+|+.++.+ ..++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~ 74 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEE 74 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh------heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHH
Confidence 4899999999999999998873 99999999988764321 23355777788999999999999988765 7777
Q ss_pred HHHHhcC-------CCEEEEEccCCCCCCCCcHHHHHHHHHHcC--CcEEEEEeccCCchh-HHHHHHHHHHHHHHHHhh
Q 014098 194 IEEAISG-------ADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIATVPFCFEG-RRRAIQAQEGVANLRNNV 263 (430)
Q Consensus 194 I~~~L~g-------aD~VfI~AGLGGGTGTGaaPvIA~~AKe~g--iltVaIVTlPF~fEG-~~r~~~A~~gL~~L~~~v 263 (430)
|.+.|+. .|.++|+++||||||||++|.|++.+|+.. .++++++++||.+|+ ..+..||..+|.+|.+++
T Consensus 75 i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~ 154 (328)
T cd00286 75 ILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHS 154 (328)
T ss_pred HHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcC
Confidence 7777754 779999999999999999999999999975 589999999999999 889999999999999999
Q ss_pred cccc-----------------------------------------cCccccccHHHHHHHH---hhcCeeEEEEEEecC-
Q 014098 264 DTLI-----------------------------------------IPGLVNVDFADVRAIM---KDAGSSLMGIGTATG- 298 (430)
Q Consensus 264 D~lI-----------------------------------------~pglINvDfaDvk~Il---~~~G~A~mGiG~a~G- 298 (430)
|.+| .||.+|+||.++.+.| ...+....+++...+
T Consensus 155 d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~ 234 (328)
T cd00286 155 DCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSE 234 (328)
T ss_pred CeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccc
Confidence 9998 5788999998887666 445666666655443
Q ss_pred ------CchHHHHHHHHHhCCCCc----CCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcC----CCccEEEeeeeC
Q 014098 299 ------KSRARDAALNAIQSPLLD----IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVD----PSANLIFGAVID 364 (430)
Q Consensus 299 ------~~ra~~Av~~AL~sPLLd----~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~----~~a~Ii~G~~id 364 (430)
..++.++++++++++++. .+..++..+++.+.|+ .+..++.++...+++... ....+.+|....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~--~~~~~v~~~~~~l~~~~~~~~w~~~~~~~~~~~~ 312 (328)
T cd00286 235 GSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP--VSPSEVREGIARVAPRTSHLSWSPPGIKVGVSPT 312 (328)
T ss_pred cccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC--CChHHHHHHHHHHHHhCCcCCcCCCCEeEeecCC
Confidence 457889999999988653 3577888899988884 499999999999988764 245788999988
Q ss_pred CCC-CCeEEEEEEee
Q 014098 365 KSL-SNQVSITLIAT 378 (430)
Q Consensus 365 e~l-~d~vrVTvIAT 378 (430)
+.. +.+..+++|++
T Consensus 313 ~~~~~~~~~~~~l~N 327 (328)
T cd00286 313 PPASEHKVSALLLSN 327 (328)
T ss_pred CCCCCcCeEEEEecc
Confidence 877 77889999875
No 9
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.95 E-value=2e-27 Score=221.58 Aligned_cols=149 Identities=54% Similarity=0.790 Sum_probs=139.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIE 195 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~ 195 (430)
||+|+|+|++|+|+|+.+.+.+ .++++++|||.+.|+.... ...|..+|...++|.|+|+||+.|++++++..++|+
T Consensus 1 ~i~~~g~g~~g~r~v~~d~e~~--~i~~i~~~t~~~~l~~~~~-~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir 77 (192)
T smart00864 1 KIKVFGVGGYGPNAVLVDLEPG--VVDEVRANTDAQALNPESL-ASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIR 77 (192)
T ss_pred CeEEEEeCCchhhHHhhhcccC--CceEEEECCHHHHhCCccc-ccchhcccccccccCCCCCChHHHHHHHHHHHHHHH
Confidence 6899999999999999998765 6888999999999987332 368889999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 196 ~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
+.++++|.+||++|||||||||++|+|++++|+++..+++++++||.+|+..+..||..+|++|++++|.+|
T Consensus 78 ~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i 149 (192)
T smart00864 78 EELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLI 149 (192)
T ss_pred HHhcCCCEEEEeccCCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 10
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=99.95 E-value=1.5e-27 Score=201.10 Aligned_cols=95 Identities=51% Similarity=0.867 Sum_probs=88.4
Q ss_pred CeeEEEEEEecCCchHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCCC
Q 014098 287 GSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKS 366 (430)
Q Consensus 287 G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~ 366 (430)
|.|+||+|+++|++|+.+|+++||+||||+.++++|+++||||+++++++|.|++++++.|++.++++++||||+++||+
T Consensus 1 G~A~iGiG~a~G~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~ 80 (95)
T PF12327_consen 1 GRAMIGIGEASGENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEE 80 (95)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TT
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeecCC
Q 014098 367 LSNQVSITLIATGFK 381 (430)
Q Consensus 367 l~d~vrVTvIATGf~ 381 (430)
|+++++||||||||+
T Consensus 81 l~d~i~VtiIaTG~~ 95 (95)
T PF12327_consen 81 LEDEIRVTIIATGFD 95 (95)
T ss_dssp GTTEEEEEEEEECEG
T ss_pred CCCeEEEEEEEEcCC
Confidence 999999999999985
No 11
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.93 E-value=4e-26 Score=216.19 Aligned_cols=152 Identities=28% Similarity=0.411 Sum_probs=134.1
Q ss_pred eEEEEeeCcchHHHHHHHHH-----------------------------cCCCcceEEEEeCcHHhhhcCCCCCCceEEc
Q 014098 116 KIKVIGVGGGGSNAVNRMIE-----------------------------SSMTGVEFWIVNTDAQAMKVSPVIPENRLQI 166 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~-----------------------------~~~~gve~iaiNTD~q~L~~s~~~a~~ki~i 166 (430)
.|.+|||||||++|++.|.+ .+.....++++|||.+.|+.......++++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~ 80 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFD 80 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence 48999999999999999998 1222377899999999998865422234888
Q ss_pred CCccCCCC-CCCCCchHHHH-----HHHHhHHHHHHHh---cCCCEEEEEccCCCCCCCCcHHHHHHHHHHc--CCcEEE
Q 014098 167 GCDLTRGL-GAGGNPSVGMN-----AANESKVAIEEAI---SGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVG 235 (430)
Q Consensus 167 G~~~t~Gl-GaG~dP~vG~~-----aA~e~~e~I~~~L---~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~--giltVa 235 (430)
+.....|. |+|+||.+|+. ++++..++|++.+ +++|.+||++|||||||||++|+|++.+|+. ++++++
T Consensus 81 ~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~ 160 (216)
T PF00091_consen 81 PNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS 160 (216)
T ss_dssp GGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence 88777777 99999999998 7888999999999 7889999999999999999999999999998 899999
Q ss_pred EEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 236 IVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
++++||.+|+..+..||..+|+.|.+++|++|
T Consensus 161 ~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i 192 (216)
T PF00091_consen 161 FSILPFSSEGVVEPYNALLSLSELQEYADSVI 192 (216)
T ss_dssp EEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEE
T ss_pred ccccccccccccccceehhHHHHHHHhCCEEE
Confidence 99999999999999999999999999999775
No 12
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.78 E-value=7.1e-19 Score=180.05 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=135.1
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCce-EEcCCccCCCCCCCCCchHH-----HHHHHHh
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENR-LQIGCDLTRGLGAGGNPSVG-----MNAANES 190 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~k-i~iG~~~t~GlGaG~dP~vG-----~~aA~e~ 190 (430)
|.+|+|||||++|.+.+.+.- +.||||.+.+.........+ +.-....++..|+|.++..| .+++++.
T Consensus 2 ii~i~vGq~G~qig~~~w~~~------i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~ 75 (382)
T cd06059 2 IISIQIGQCGNQIGNKFWELL------ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEI 75 (382)
T ss_pred eEEEecCCcHHHHHHHHHHHH------HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHH
Confidence 789999999999999998772 99999999988654311111 11233345567888888655 4788899
Q ss_pred HHHHHHHhcCCCEE---EEEccCCCCCCCCcHHHHHHHHHHc--CCcEEEEEeccCCchh--HHHHHHHHHHHHHHHHhh
Q 014098 191 KVAIEEAISGADMI---FVTAGMGGGTGTGAAPVIAGIAKSM--GILTVGIATVPFCFEG--RRRAIQAQEGVANLRNNV 263 (430)
Q Consensus 191 ~e~I~~~L~gaD~V---fI~AGLGGGTGTGaaPvIA~~AKe~--giltVaIVTlPF~fEG--~~r~~~A~~gL~~L~~~v 263 (430)
.+.|+..++.+|.+ +|+++||||||+|+++.|++.+|+. +..++++++.||.+++ ..+..||..+|..|.+++
T Consensus 76 ~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~s 155 (382)
T cd06059 76 LDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENS 155 (382)
T ss_pred HHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcC
Confidence 99999999999966 9999999999999999999999986 5788899999999997 678889999999999999
Q ss_pred cccc-----------------------------------------cCccccccHHHHHHHHhh
Q 014098 264 DTLI-----------------------------------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 264 D~lI-----------------------------------------~pglINvDfaDvk~Il~~ 285 (430)
|.+| .||.+|+|+.|+.+.|--
T Consensus 156 d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP 218 (382)
T cd06059 156 DSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVP 218 (382)
T ss_pred CeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCC
Confidence 9998 478889999999887644
No 13
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.63 E-value=6.4e-15 Score=124.44 Aligned_cols=112 Identities=51% Similarity=0.760 Sum_probs=104.5
Q ss_pred ccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCCcC-CccccCceEEEEEeCCCCCHHHHHHHHHHHHhh
Q 014098 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDI-GIETATGIVWNITGGTDLTLFEVNTAAEVIYDL 350 (430)
Q Consensus 272 INvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd~-~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~~~ 350 (430)
+|+||+|++++|...+.+++|+|.+.|++|+.+|++.|+++||++. ++..|++++++|+++.++++.|++++++.|++.
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~~~~~l~~~~~~~~~ev~~~~~~i~~~ 80 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGPDLTLKEVNEAMERIREK 80 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCceEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999999999998999999999999999985 588999999999999999999999999999999
Q ss_pred cCCCccEEEeeeeCCCC-CCeEEEEEEeecCCCC
Q 014098 351 VDPSANLIFGAVIDKSL-SNQVSITLIATGFKGD 383 (430)
Q Consensus 351 ~~~~a~Ii~G~~ide~l-~d~vrVTvIATGf~~~ 383 (430)
..+...+.||.+.++++ .+.++|++|+||+...
T Consensus 81 ~~~~~~v~w~~~~~~~~~~~~~~i~ni~t~i~~~ 114 (120)
T smart00865 81 ADPDAFIIWGPVIDEELGGDEIRVTVIATGIGSA 114 (120)
T ss_pred cCCCceEEEccccCCcCCCCcEEEEEEecccCcc
Confidence 87678899999899999 7899999999999854
No 14
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.54 E-value=2.1e-14 Score=147.61 Aligned_cols=227 Identities=16% Similarity=0.228 Sum_probs=153.7
Q ss_pred EEEEeeCcchHHHHHHHHHcCC---CcceEEEEeCcHHhhhcCCCCC------CceEEcCCccCCCCCCCCCchHH----
Q 014098 117 IKVIGVGGGGSNAVNRMIESSM---TGVEFWIVNTDAQAMKVSPVIP------ENRLQIGCDLTRGLGAGGNPSVG---- 183 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~---~gve~iaiNTD~q~L~~s~~~a------~~ki~iG~~~t~GlGaG~dP~vG---- 183 (430)
|..|.+||||++|.+.+.+.=. --...+.||+|.+.++.....+ ++.+..+ ..|+|.++..|
T Consensus 3 ii~i~~GqcGnqig~~~w~~~~~eh~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~-----~~gaGnn~a~G~~~~ 77 (379)
T cd02190 3 IIVVQVGQCGNQIGCRFWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTD-----VSGAGNNWAVGYHQY 77 (379)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHhhcCCcceeccCChhHHHHHhcCccccccCccccccc-----CCCCCCCccceeecc
Confidence 7899999999999998854411 2256789999998876543211 1222222 24788777654
Q ss_pred -HHHHHHhHHHHHHHhcCCCE---EEEEccCCCCCCCCcHHHHHHHHHHc--CCcEEEEEeccCCchhH-HHHHHHHHHH
Q 014098 184 -MNAANESKVAIEEAISGADM---IFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVGIATVPFCFEGR-RRAIQAQEGV 256 (430)
Q Consensus 184 -~~aA~e~~e~I~~~L~gaD~---VfI~AGLGGGTGTGaaPvIA~~AKe~--giltVaIVTlPF~fEG~-~r~~~A~~gL 256 (430)
.+..++..+.|++.++.+|. ++|+++||||||||.++.|++.+++. ...++.+++.|+..++. ...-|+..+|
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl 157 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLAL 157 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHHH
Confidence 56777888999999999886 59999999999999999999999875 34566677799986543 2456899999
Q ss_pred HHHHHhhcccc-----------------------------cCccccccHHHHHHHHhh-cCeeEEEEEEe---------c
Q 014098 257 ANLRNNVDTLI-----------------------------IPGLVNVDFADVRAIMKD-AGSSLMGIGTA---------T 297 (430)
Q Consensus 257 ~~L~~~vD~lI-----------------------------~pglINvDfaDvk~Il~~-~G~A~mGiG~a---------~ 297 (430)
..|.+++|.+| .||.+|+|+.|+.+-|-- ...-++-.+.+ .
T Consensus 158 ~~l~~~~d~~i~~~N~~l~~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~ 237 (379)
T cd02190 158 RELIEHADCVLPIENQALVPFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNV 237 (379)
T ss_pred HHHHHhCCeeEEeccHHHHHHHHHHHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhhccc
Confidence 99999999887 478899999998776532 22222222211 1
Q ss_pred CCchHHHHHHHHHhC--CCCcCCccccCceE--EEEEeCCCCCHHHHHHHHHHHHhh
Q 014098 298 GKSRARDAALNAIQS--PLLDIGIETATGIV--WNITGGTDLTLFEVNTAAEVIYDL 350 (430)
Q Consensus 298 G~~ra~~Av~~AL~s--PLLd~~i~~A~gvL--vnI~gg~dl~L~Ev~~a~~~I~~~ 350 (430)
.+....+-.++.+++ .+...+....+.+- +-+.| +++..|+.+.+..+++.
T Consensus 238 ~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG--~~~~~ei~~~~~~l~~~ 292 (379)
T cd02190 238 PPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG--NVSVSDLRRNIERLKPK 292 (379)
T ss_pred cCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC--CCCHHHHHHHHHHHhcc
Confidence 223345556666642 23333322222222 22223 78889998888887665
No 15
>PTZ00387 epsilon tubulin; Provisional
Probab=99.29 E-value=2e-11 Score=128.84 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=112.1
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC---Cc--------------------------ceEEEEeCcHHhhhcCCCCCC
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM---TG--------------------------VEFWIVNTDAQAMKVSPVIPE 161 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~---~g--------------------------ve~iaiNTD~q~L~~s~~~a~ 161 (430)
.|..|-|||||+.|-+.+.+. +. .+ ...+.||+|.+.++.... .+
T Consensus 3 EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~-~~ 81 (465)
T PTZ00387 3 EIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILK-SP 81 (465)
T ss_pred cEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcccccccceecccccccccCCCccccCcccccCCCccHHHHhhc-CC
Confidence 378899999999998876432 31 00 123557777766654321 11
Q ss_pred ceEEcCCc--cCCCCCCCCCchHH-----HHHHHHhHHHHHHHhcCCCEE---EEEccCCCCCCCCcHHHHHHHHHHc--
Q 014098 162 NRLQIGCD--LTRGLGAGGNPSVG-----MNAANESKVAIEEAISGADMI---FVTAGMGGGTGTGAAPVIAGIAKSM-- 229 (430)
Q Consensus 162 ~ki~iG~~--~t~GlGaG~dP~vG-----~~aA~e~~e~I~~~L~gaD~V---fI~AGLGGGTGTGaaPvIA~~AKe~-- 229 (430)
.+=++.++ .+.-.|+|.++..| +++.++..+.|++.++.+|.+ +|+++||||||||.++.|++.+++.
T Consensus 82 ~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~ 161 (465)
T PTZ00387 82 LGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP 161 (465)
T ss_pred cccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence 11011111 13336999999987 788899999999999999976 8999999999999999999999987
Q ss_pred CCcEEEEEeccCCchhH-HHHHHHHHHHHHHHHhhcccc
Q 014098 230 GILTVGIATVPFCFEGR-RRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 230 giltVaIVTlPF~fEG~-~r~~~A~~gL~~L~~~vD~lI 267 (430)
+..++.+++.|+..++. ....|+..+|..|.+++|.+|
T Consensus 162 ~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i 200 (465)
T PTZ00387 162 HVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVL 200 (465)
T ss_pred cCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEE
Confidence 57778888899875442 245699999999999999998
No 16
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.15 E-value=4.2e-10 Score=117.86 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=109.1
Q ss_pred EEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHhhhcCCCC----
Q 014098 117 IKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPVI---- 159 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~-----~~--~g--------------------------ve~iaiNTD~q~L~~s~~~---- 159 (430)
|..|-||+||+.|-+.+.+. ++ .+ ...+.||+|.+.++.....
T Consensus 3 iI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~ 82 (431)
T cd02188 3 IITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRN 82 (431)
T ss_pred EEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcccc
Confidence 77899999999998876422 22 00 1236788887766543211
Q ss_pred --CCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHh----cCC---CEEEEEccCCCCCCCCcHHHHHHHHHHc-
Q 014098 160 --PENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAI----SGA---DMIFVTAGMGGGTGTGAAPVIAGIAKSM- 229 (430)
Q Consensus 160 --a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L----~ga---D~VfI~AGLGGGTGTGaaPvIA~~AKe~- 229 (430)
.++.+..++. |-|+|.++..|....++..++|.+.| +.+ +.++|+++||||||+|.++.|++.+++.
T Consensus 83 lf~~~~~~~~~~---~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 83 LYNPENIFLSKH---GGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccCccceEeecc---CCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 1223333331 33899999999888888877777766 345 6999999999999999999999998875
Q ss_pred -CCcEEEEEeccCCchh---HHHHHHHHHHHHHHHHhhcccc
Q 014098 230 -GILTVGIATVPFCFEG---RRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 230 -giltVaIVTlPF~fEG---~~r~~~A~~gL~~L~~~vD~lI 267 (430)
...++++++.|+..++ ....-||.-+|..|.+++|.+|
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~ 201 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVV 201 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeee
Confidence 3457778889997653 3566799999999999999998
No 17
>PLN00222 tubulin gamma chain; Provisional
Probab=99.14 E-value=4.9e-10 Score=118.13 Aligned_cols=149 Identities=16% Similarity=0.247 Sum_probs=109.3
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHhhhcCCC----
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV---- 158 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~--~g--------------------------ve~iaiNTD~q~L~~s~~---- 158 (430)
.|..|-||+||+.|-+.+.+. ++ .+ ...+.||+|.+.++....
T Consensus 4 EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~ 83 (454)
T PLN00222 4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYR 83 (454)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccc
Confidence 388999999999998876432 22 00 124678888776654421
Q ss_pred --CCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHh----c---CCCEEEEEccCCCCCCCCcHHHHHHHHHHc
Q 014098 159 --IPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAI----S---GADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (430)
Q Consensus 159 --~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L----~---gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~ 229 (430)
-.++.+..|+. |-|+|.++..|...+.+..++|.+.| + ..+.++++++||||||+|..+.|++.+++.
T Consensus 84 ~lf~~~~~~~~~~---~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 84 NLYNHENIFVSDH---GGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccCccceeeccc---CCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 11223444432 33899999999887777777777666 3 346999999999999999999999999885
Q ss_pred --CCcEEEEEeccCCchhH---HHHHHHHHHHHHHHHhhcccc
Q 014098 230 --GILTVGIATVPFCFEGR---RRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 230 --giltVaIVTlPF~fEG~---~r~~~A~~gL~~L~~~vD~lI 267 (430)
...++++++.|+..+.. ...-|+.-+|..|.+++|.+|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~ 203 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVV 203 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeee
Confidence 34577788899975432 456799999999999999998
No 18
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.14 E-value=4.3e-10 Score=118.20 Aligned_cols=169 Identities=17% Similarity=0.288 Sum_probs=121.1
Q ss_pred EEEEeeCcchHHHHHHHHHc-----CC--C----------c------------ceEEEEeCcHHhhhcCCCCCC-c--eE
Q 014098 117 IKVIGVGGGGSNAVNRMIES-----SM--T----------G------------VEFWIVNTDAQAMKVSPVIPE-N--RL 164 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~-----~~--~----------g------------ve~iaiNTD~q~L~~s~~~a~-~--ki 164 (430)
|..|-|||||+.+-+.+.+. ++ . + ...+.||+|.+.++....... . .+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccccc
Confidence 56789999999988876432 22 0 0 224889999888776532111 1 11
Q ss_pred EcCCccCCCCCCCCCchH-----HHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHHc--CCcEE
Q 014098 165 QIGCDLTRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTV 234 (430)
Q Consensus 165 ~iG~~~t~GlGaG~dP~v-----G~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe~--giltV 234 (430)
.-..-.++..|+|.++.. |.+..++..+.|++.++.+| .++++++||||||+|..+.|++.+++. ...++
T Consensus 82 ~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcccee
Confidence 111122445699999984 56778888888888887555 889999999999999999999999885 34567
Q ss_pred EEEeccCCc-hhHHHHHHHHHHHHHHHHhhcccc-------------cCccccccHHHHHHHHhh
Q 014098 235 GIATVPFCF-EGRRRAIQAQEGVANLRNNVDTLI-------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 235 aIVTlPF~f-EG~~r~~~A~~gL~~L~~~vD~lI-------------~pglINvDfaDvk~Il~~ 285 (430)
++++.||.. |.....-||..+|..|.+++|.+| .-+.-+..|.|+..++..
T Consensus 162 ~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~ 226 (446)
T cd02189 162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAH 226 (446)
T ss_pred eeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 888899863 444555799999999999999998 123445677777776654
No 19
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.13 E-value=5.5e-10 Score=116.98 Aligned_cols=168 Identities=13% Similarity=0.159 Sum_probs=121.5
Q ss_pred EEEEeeCcchHHHHHHHHHc-----CC--C----------------c------------ceEEEEeCcHHhhhcCCCCCC
Q 014098 117 IKVIGVGGGGSNAVNRMIES-----SM--T----------------G------------VEFWIVNTDAQAMKVSPVIPE 161 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~-----~~--~----------------g------------ve~iaiNTD~q~L~~s~~~a~ 161 (430)
|..|-+|+||+.|-..+.+. ++ . . ...+.||+|.+.++.... .+
T Consensus 3 iI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~-~~ 81 (434)
T cd02186 3 VISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT-GT 81 (434)
T ss_pred eEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhcc-Cc
Confidence 78899999999988766422 11 0 0 124789999998876532 12
Q ss_pred ceEEcCCc-cCCC-CCCCCC-----chHHHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHHc-C
Q 014098 162 NRLQIGCD-LTRG-LGAGGN-----PSVGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKSM-G 230 (430)
Q Consensus 162 ~ki~iG~~-~t~G-lGaG~d-----P~vG~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe~-g 230 (430)
.+-+++++ ...| .|+|.+ ...|.++.++..+.|+..++.+| .++|+++||||||+|..+.|++.+++. +
T Consensus 82 ~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~ 161 (434)
T cd02186 82 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYG 161 (434)
T ss_pred cccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcC
Confidence 22223332 2222 355554 45778888899999999998776 699999999999999999999999875 3
Q ss_pred -CcEEEEEeccCCc--hhHHHHHHHHHHHHHHHHhhcccc-------------cCccccccHHHHHHHHhh
Q 014098 231 -ILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLI-------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 231 -iltVaIVTlPF~f--EG~~r~~~A~~gL~~L~~~vD~lI-------------~pglINvDfaDvk~Il~~ 285 (430)
..++++++.|+.. |.....-|+.-+|..|.+++|.+| ..++-+..|.|+..++..
T Consensus 162 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~ 232 (434)
T cd02186 162 KKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQ 232 (434)
T ss_pred ccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 6678888899975 566677899999999999999988 122234567777777665
No 20
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.12 E-value=9.3e-10 Score=114.97 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=121.0
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--C------------c--------------ceEEEEeCcHHhhhcCCCC---
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM--T------------G--------------VEFWIVNTDAQAMKVSPVI--- 159 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~--~------------g--------------ve~iaiNTD~q~L~~s~~~--- 159 (430)
.|..|-+|+||+.+-+.+.+. ++ . . ...++||+|...|......
T Consensus 2 eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~ 81 (425)
T cd02187 2 EIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFG 81 (425)
T ss_pred ceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCccc
Confidence 377899999999988876433 11 0 0 1348899998877654321
Q ss_pred ---CCceEEcCCccCCCCCCCCCc-----hHHHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHH
Q 014098 160 ---PENRLQIGCDLTRGLGAGGNP-----SVGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (430)
Q Consensus 160 ---a~~ki~iG~~~t~GlGaG~dP-----~vG~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe 228 (430)
.++.+..|+. |+|.++ ..|.++.++-.+.|+..++.+| -++|+++||||||+|.++.+++.+++
T Consensus 82 ~l~~~~~~~~~~~-----gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d 156 (425)
T cd02187 82 QLFRPDNFVFGQS-----GAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 156 (425)
T ss_pred ceecCcceeeccC-----CCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHH
Confidence 1234555542 555544 4567888888889999998777 55899999999999999999999887
Q ss_pred c--CCcEEEEEeccCCc--hhHHHHHHHHHHHHHHHHhhcccc-------------cCccccccHHHHHHHHhh
Q 014098 229 M--GILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLI-------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 229 ~--giltVaIVTlPF~f--EG~~r~~~A~~gL~~L~~~vD~lI-------------~pglINvDfaDvk~Il~~ 285 (430)
. ...++++++.|+.. |.....-|+.-+|..|.+++|.+| .-+..+..|.|+..++..
T Consensus 157 ~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~ 230 (425)
T cd02187 157 EYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSA 230 (425)
T ss_pred hcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhc
Confidence 4 34577777799875 677778899999999999999998 123345667777776654
No 21
>PF13809 Tubulin_2: Tubulin like
Probab=99.05 E-value=1.9e-09 Score=109.56 Aligned_cols=147 Identities=24% Similarity=0.335 Sum_probs=104.8
Q ss_pred EEEeeCcchHHHHHHHHHc--------C-CCcceEEEEeCcHH-------------hhhcCC-CCC---C---ceE----
Q 014098 118 KVIGVGGGGSNAVNRMIES--------S-MTGVEFWIVNTDAQ-------------AMKVSP-VIP---E---NRL---- 164 (430)
Q Consensus 118 kVIGVGGaG~NiV~~m~~~--------~-~~gve~iaiNTD~q-------------~L~~s~-~~a---~---~ki---- 164 (430)
.|||+||.|+.++.+|.+. . .+.++|++||||.. .+.... ... . .++
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDENSGLADGRSHGVGISLDEIEKLYAFITSSDLSQRLDRL 80 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcccccccccccccccccCchhhcccccchhhHHHHHhcc
Confidence 4899999999999998765 1 34599999999988 111000 000 0 000
Q ss_pred E--------cCCc-----cCCCCCCCCCchHHHHHHHHhHHHHHHHhcC------------CC-----EEEEEccCCCCC
Q 014098 165 Q--------IGCD-----LTRGLGAGGNPSVGMNAANESKVAIEEAISG------------AD-----MIFVTAGMGGGT 214 (430)
Q Consensus 165 ~--------iG~~-----~t~GlGaG~dP~vG~~aA~e~~e~I~~~L~g------------aD-----~VfI~AGLGGGT 214 (430)
. +..+ ..-..|||.-+.+||-+.....++|.+.|+. .. .|||+++|+|||
T Consensus 81 ~~~~~i~~W~p~~~~~~~~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGT 160 (345)
T PF13809_consen 81 SAYPEIAEWLPPELERNNTPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGT 160 (345)
T ss_pred cCCchhhhcCCccccccCCchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCcc
Confidence 0 0111 1124789999999999887777776655521 11 899999999999
Q ss_pred CCCcHHHHHHHHHH-------cCCcEEEEEeccCCchh-----HHHHHHHHHHHHHHHHhhc
Q 014098 215 GTGAAPVIAGIAKS-------MGILTVGIATVPFCFEG-----RRRAIQAQEGVANLRNNVD 264 (430)
Q Consensus 215 GTGaaPvIA~~AKe-------~giltVaIVTlPF~fEG-----~~r~~~A~~gL~~L~~~vD 264 (430)
|+|...-||..++. ....+.+++.+|-.|++ .+...||-.+|.||..+.+
T Consensus 161 GSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~~~ 222 (345)
T PF13809_consen 161 GSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYLMD 222 (345)
T ss_pred chhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHHhC
Confidence 99999999988776 24778899999997665 4677899999999988764
No 22
>PLN00220 tubulin beta chain; Provisional
Probab=99.03 E-value=2.7e-09 Score=112.16 Aligned_cols=147 Identities=19% Similarity=0.254 Sum_probs=107.4
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CCC--------------c--------------ceEEEEeCcHHhhhcCCC----
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SMT--------------G--------------VEFWIVNTDAQAMKVSPV---- 158 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~~--------------g--------------ve~iaiNTD~q~L~~s~~---- 158 (430)
.|..|-+||||+.|-+.+.+. ++. . ...+.||+|.+.++....
T Consensus 3 Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~ 82 (447)
T PLN00220 3 EILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (447)
T ss_pred ceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccc
Confidence 378899999999988876432 110 0 223677887776654321
Q ss_pred --CCCceEEcCCccCCCCCCCCCchHH-----HHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHH
Q 014098 159 --IPENRLQIGCDLTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (430)
Q Consensus 159 --~a~~ki~iG~~~t~GlGaG~dP~vG-----~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe 228 (430)
-.++.+..++ .|+|.++..| .+..++..+.|+..++.+| -++|+++||||||+|..+.|++.+++
T Consensus 83 ~~~~~~~~~~~~-----~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~ 157 (447)
T PLN00220 83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (447)
T ss_pred cccCccceEecc-----cCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHH
Confidence 1122333333 5888888755 5677778888999998888 99999999999999999999988877
Q ss_pred c-C---CcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 229 M-G---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 229 ~-g---iltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
. + +.+++|+..|+..|...+.-||..+|..|.+++|.+|
T Consensus 158 ~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i 200 (447)
T PLN00220 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200 (447)
T ss_pred hccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceE
Confidence 4 2 4455554444456888888999999999999999998
No 23
>PTZ00335 tubulin alpha chain; Provisional
Probab=98.93 E-value=9e-09 Score=108.44 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=117.9
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--C----------------c------------ceEEEEeCcHHhhhcCCCC-
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM--T----------------G------------VEFWIVNTDAQAMKVSPVI- 159 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~--~----------------g------------ve~iaiNTD~q~L~~s~~~- 159 (430)
.|..|-+|+||+.|-+.+.+. ++ . + ...+.||+|.+.++.....
T Consensus 3 EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 82 (448)
T PTZ00335 3 EVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGT 82 (448)
T ss_pred cEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCc
Confidence 388899999999998876422 21 0 0 1125677777766543211
Q ss_pred -----CCceEEcCCccCCCCCCCCCchH-----HHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHH
Q 014098 160 -----PENRLQIGCDLTRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA 226 (430)
Q Consensus 160 -----a~~ki~iG~~~t~GlGaG~dP~v-----G~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~A 226 (430)
.++.+..|+ .|+|.++.. |.+..++..+.|+..++.+| .++|+.+||||||+|..+.|.+.+
T Consensus 83 ~~~l~~~~~~i~~~-----~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l 157 (448)
T PTZ00335 83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERL 157 (448)
T ss_pred cccccCchheeecC-----CCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence 112233333 477777664 55667777888888888777 459999999999999999999999
Q ss_pred HHc--CCcEEEEEeccCCc--hhHHHHHHHHHHHHHHHHhhcccc-------------cCccccccHHHHHHHHhh
Q 014098 227 KSM--GILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLI-------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 227 Ke~--giltVaIVTlPF~f--EG~~r~~~A~~gL~~L~~~vD~lI-------------~pglINvDfaDvk~Il~~ 285 (430)
++. ...++++++.|+.. |.....-|+.-+|..|.+++|.+| .-++.+.+|.|+..++..
T Consensus 158 ~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~ 233 (448)
T PTZ00335 158 SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQ 233 (448)
T ss_pred HHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHh
Confidence 885 35678888899953 666677899999999999999988 112344667777777765
No 24
>PTZ00010 tubulin beta chain; Provisional
Probab=98.70 E-value=1.9e-07 Score=98.37 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=106.2
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--C------------c--------------ceEEEEeCcHHhhhcCCC----
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM--T------------G--------------VEFWIVNTDAQAMKVSPV---- 158 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~--~------------g--------------ve~iaiNTD~q~L~~s~~---- 158 (430)
.|..|-+||||+.+-+.+.+. ++ . . ...+.||+|...+.....
T Consensus 3 Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~ 82 (445)
T PTZ00010 3 EIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYG 82 (445)
T ss_pred cEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchh
Confidence 378899999999987765332 11 0 0 124778888887764321
Q ss_pred --CCCceEEcCCccCCCCCCCCCch-----HHHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHH
Q 014098 159 --IPENRLQIGCDLTRGLGAGGNPS-----VGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (430)
Q Consensus 159 --~a~~ki~iG~~~t~GlGaG~dP~-----vG~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe 228 (430)
-.++.+..|+ .|+|.|+. .|.+..++..+.|++.++.+| -++|+.+||||||+|....|++.+++
T Consensus 83 ~lf~~~~~~~~~-----~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~d 157 (445)
T PTZ00010 83 QLFRPDNFIFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLRE 157 (445)
T ss_pred hhcCccceeecc-----cCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHh
Confidence 1123455554 36666665 456677777888888887655 89999999999999999999999887
Q ss_pred c-C-CcEEEEEeccCCc--hhHHHHHHHHHHHHHHHHhhcccc
Q 014098 229 M-G-ILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 229 ~-g-iltVaIVTlPF~f--EG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
. + ..+..+...|+.. +.....-|+.-++..|.+++|.+|
T Consensus 158 ey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i 200 (445)
T PTZ00010 158 EYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESM 200 (445)
T ss_pred hCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCcee
Confidence 5 3 3456666689854 455567799999999999999998
No 25
>PLN00221 tubulin alpha chain; Provisional
Probab=98.60 E-value=6.1e-07 Score=94.78 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=115.5
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHhhhcCCCC-
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPVI- 159 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-----~~--~g----------------------------ve~iaiNTD~q~L~~s~~~- 159 (430)
.|..|-|||||+.|-+.+.+. ++ .| ...+.||+|.+.++.....
T Consensus 3 EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 82 (450)
T PLN00221 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCc
Confidence 378899999999998876432 21 00 1236678887766544211
Q ss_pred -----CCceEEcCCccCCCCCCCCCchHH-----HHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHH
Q 014098 160 -----PENRLQIGCDLTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA 226 (430)
Q Consensus 160 -----a~~ki~iG~~~t~GlGaG~dP~vG-----~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~A 226 (430)
.++.+..++ .|+|.++..| .+..++-.+.|+..++.+| .++|+..||||||+|..-.|.+.+
T Consensus 83 ~~~lf~~~~~i~~~-----~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l 157 (450)
T PLN00221 83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERL 157 (450)
T ss_pred cccccCccceeccC-----CCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence 112233333 4888888764 4566677778888888776 778999999999999999999988
Q ss_pred HHc-C-CcEEEEEeccCCc--hhHHHHHHHHHHHHHHHHhhcccc-------------cCccccccHHHHHHHHhh
Q 014098 227 KSM-G-ILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLI-------------IPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 227 Ke~-g-iltVaIVTlPF~f--EG~~r~~~A~~gL~~L~~~vD~lI-------------~pglINvDfaDvk~Il~~ 285 (430)
++. + ..++.++..|+.. +-....-|+.-++..|.+++|.++ .-++-+..|.|+..++..
T Consensus 158 ~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~ 233 (450)
T PLN00221 158 SVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ 233 (450)
T ss_pred HHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhh
Confidence 874 2 4455666689853 334567789999999999999988 123345677777777765
No 26
>COG5023 Tubulin [Cytoskeleton]
Probab=97.81 E-value=6.2e-05 Score=77.66 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=116.2
Q ss_pred CceEEcCCccCCCCCCCCCchHH-----HHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHH-cC-
Q 014098 161 ENRLQIGCDLTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG- 230 (430)
Q Consensus 161 ~~ki~iG~~~t~GlGaG~dP~vG-----~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe-~g- 230 (430)
+..+.+|++ |||.++..| ++....-.+.|++..+++| -+.|+..+|||||+|..-.+.+.+++ .+
T Consensus 87 Pen~i~gke-----gAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypk 161 (443)
T COG5023 87 PENIIFGKE-----GAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161 (443)
T ss_pred hhheeeccc-----cccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcch
Confidence 345667764 688887755 6666677777888888888 56889999999999998888876655 33
Q ss_pred --CcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc-----------------------------------------
Q 014098 231 --ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI----------------------------------------- 267 (430)
Q Consensus 231 --iltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI----------------------------------------- 267 (430)
++|++|.--|-..+---.--|+.-.+.+|-+++|+++
T Consensus 162 K~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslR 241 (443)
T COG5023 162 KIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLR 241 (443)
T ss_pred hheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhheee
Confidence 6778885444444333333578888999999999887
Q ss_pred cCccccccHHHHHHHHhh-cCeeEEEEEEec----CC-----chHHHHHHHHHh--CCCCcCCccccCceEEEEEeCCCC
Q 014098 268 IPGLVNVDFADVRAIMKD-AGSSLMGIGTAT----GK-----SRARDAALNAIQ--SPLLDIGIETATGIVWNITGGTDL 335 (430)
Q Consensus 268 ~pglINvDfaDvk~Il~~-~G~A~mGiG~a~----G~-----~ra~~Av~~AL~--sPLLd~~i~~A~gvLvnI~gg~dl 335 (430)
-||..|.|+..+.+-|=- .-.-++-.+.+. ++ ....+..++-+. +.+...+.+.-+.+-+...---++
T Consensus 242 fpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v 321 (443)
T COG5023 242 FPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGDV 321 (443)
T ss_pred cCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcCC
Confidence 467777777666554432 122333333321 11 111122222221 112234554444443322222368
Q ss_pred CHHHHHHHHHHHHhh
Q 014098 336 TLFEVNTAAEVIYDL 350 (430)
Q Consensus 336 ~L~Ev~~a~~~I~~~ 350 (430)
...|+++++..|+++
T Consensus 322 ~~~dV~~a~~~v~~k 336 (443)
T COG5023 322 DPRDVSRAVTRVQSK 336 (443)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999987
No 27
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=97.38 E-value=0.00051 Score=71.15 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=82.6
Q ss_pred CCCCCCCCchHHHHHHHHhHHHHHHHh----cCCC---EEEEEccCCCCCCCCcHHHHHHHHHHcC----CcEEEEEecc
Q 014098 172 RGLGAGGNPSVGMNAANESKVAIEEAI----SGAD---MIFVTAGMGGGTGTGAAPVIAGIAKSMG----ILTVGIATVP 240 (430)
Q Consensus 172 ~GlGaG~dP~vG~~aA~e~~e~I~~~L----~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe~g----iltVaIVTlP 240 (430)
.|-|||.|+.-|.-..+...|+|.+.| +++| -++++..+.||||||.--.+.+-+++.. +.|.+| .|
T Consensus 96 ~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysV--fP 173 (448)
T KOG1374|consen 96 HGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSV--FP 173 (448)
T ss_pred CCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeee--cc
Confidence 478999999987766666666666665 4665 7899999999999999999999887753 556666 68
Q ss_pred CCchhHH---HHHHHHHHHHHHHHhhcccc---------c----CccccccHHHHHHHHh
Q 014098 241 FCFEGRR---RAIQAQEGVANLRNNVDTLI---------I----PGLVNVDFADVRAIMK 284 (430)
Q Consensus 241 F~fEG~~---r~~~A~~gL~~L~~~vD~lI---------~----pglINvDfaDvk~Il~ 284 (430)
...|-.. .--|..-.|++|-+.+|+++ + --.-|.+|.++..+++
T Consensus 174 n~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvs 233 (448)
T KOG1374|consen 174 NQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVS 233 (448)
T ss_pred CCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 8766543 22467788999999999998 1 1134778888665554
No 28
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.62 E-value=0.054 Score=52.45 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
+|.|+|. |.-|..++.+|.+.+ .++.++.-+.+...... ..... +|. .+.+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R~~~~~~~~~----~~~~~-----------~d~--------~d~~~l 54 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASRSSSSSAGPN----EKHVK-----------FDW--------LDEDTW 54 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeCCCccccCCC----Ccccc-----------ccC--------CCHHHH
Confidence 5889998 999999999998864 45666555443221100 00000 111 344455
Q ss_pred HHHh------cC-CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcc-c
Q 014098 195 EEAI------SG-ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDT-L 266 (430)
Q Consensus 195 ~~~L------~g-aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~-l 266 (430)
.+++ ++ +|.||++++..... .-....+++.|++.|+.-|..++......+........+-+++... .+. +
T Consensus 55 ~~a~~~~~~~~g~~d~v~~~~~~~~~~-~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~g-i~~ti 132 (285)
T TIGR03649 55 DNPFSSDDGMEPEISAVYLVAPPIPDL-APPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGG-VEYTV 132 (285)
T ss_pred HHHHhcccCcCCceeEEEEeCCCCCCh-hHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccC-CCEEE
Confidence 5555 67 99999987643211 1123346678899998766655432221211111112222222111 232 3
Q ss_pred ccCccc--cccHHH-HHHHHhhcCeeEEEEEEecCC------chHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCCH
Q 014098 267 IIPGLV--NVDFAD-VRAIMKDAGSSLMGIGTATGK------SRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTL 337 (430)
Q Consensus 267 I~pglI--NvDfaD-vk~Il~~~G~A~mGiG~a~G~------~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~L 337 (430)
+.|+++ |+ +.. ...-+...|.-+. +.+++. ..+-+++-.+|..| ...+-..+++|+..+|+
T Consensus 133 lRp~~f~~~~-~~~~~~~~~~~~~~~~~--~~g~~~~~~v~~~Dva~~~~~~l~~~-------~~~~~~~~l~g~~~~s~ 202 (285)
T TIGR03649 133 LRPTWFMENF-SEEFHVEAIRKENKIYS--ATGDGKIPFVSADDIARVAYRALTDK-------VAPNTDYVVLGPELLTY 202 (285)
T ss_pred EeccHHhhhh-cccccccccccCCeEEe--cCCCCccCcccHHHHHHHHHHHhcCC-------CcCCCeEEeeCCccCCH
Confidence 366643 32 111 0111222333222 222222 22333444444432 11234578888888998
Q ss_pred HHHHHHHHHHH
Q 014098 338 FEVNTAAEVIY 348 (430)
Q Consensus 338 ~Ev~~a~~~I~ 348 (430)
.|+-+++..+.
T Consensus 203 ~eia~~l~~~~ 213 (285)
T TIGR03649 203 DDVAEILSRVL 213 (285)
T ss_pred HHHHHHHHHHh
Confidence 88877666553
No 29
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.27 E-value=0.16 Score=45.62 Aligned_cols=96 Identities=23% Similarity=0.220 Sum_probs=68.6
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHH
Q 014098 117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIE 195 (430)
Q Consensus 117 IkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~ 195 (430)
|.|+|. |..|..++..|++.+ .+..++--+.+.+... ..-.+..|.- .+.+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~~~---~~~~~~~~d~-------------------~d~~~~~ 55 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAEDS---PGVEIIQGDL-------------------FDPDSVK 55 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHHHC---TTEEEEESCT-------------------TCHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhcccc---cccccceeee-------------------hhhhhhh
Confidence 689997 999999999999986 6777777766666541 1233333321 3457889
Q ss_pred HHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEe
Q 014098 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT 238 (430)
Q Consensus 196 ~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVT 238 (430)
++++++|.||.++|-.... .-.+..+.+.+++.++.-+-+++
T Consensus 56 ~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 56 AALKGADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHTTSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEEE
T ss_pred hhhhhcchhhhhhhhhccc-ccccccccccccccccccceeee
Confidence 9999999999999765553 34455666778888887666655
No 30
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.14 E-value=1.9 Score=42.79 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=59.6
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
|+|.|+|. |-.|..++.+|.+++ .+..++.-+........ .....+..|. + .+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~~~~~~~l~-~~~v~~v~~D-l------------------~d~~~ 57 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRNLRKASFLK-EWGAELVYGD-L------------------SLPET 57 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcChHHhhhHh-hcCCEEEECC-C------------------CCHHH
Confidence 58999995 999999999999874 55655544332221110 0112232222 1 13456
Q ss_pred HHHHhcCCCEEEEEccCCCCCC-------CCcHHHHHHHHHHcCCcEEEEEe
Q 014098 194 IEEAISGADMIFVTAGMGGGTG-------TGAAPVIAGIAKSMGILTVGIAT 238 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTG-------TGaaPvIA~~AKe~giltVaIVT 238 (430)
+.++++++|.||-+++...... .-++.-+++.|++.|+.-+-.++
T Consensus 58 l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~S 109 (317)
T CHL00194 58 LPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS 109 (317)
T ss_pred HHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEec
Confidence 7788999999998765321100 01235677889998876554433
No 31
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.83 E-value=0.62 Score=43.79 Aligned_cols=198 Identities=15% Similarity=0.219 Sum_probs=106.8
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCcceEEE--EeCcH---HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWI--VNTDA---QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 117 IkVIGV-GGaG~NiV~~m~~~~~~gve~ia--iNTD~---q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
|.|+|. |.-|..+++.|.+. +.+..+ =|.+. +.|.... ..+..+. ..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~~~~~~~l~~~g----~~vv~~d-------------------~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPSSDRAQQLQALG----AEVVEAD-------------------YDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSHHHHHHHHHHTT----TEEEES--------------------TT-
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccchhhhhhhhccc----ceEeecc-------------------cCC
Confidence 789997 99999999999994 444444 33322 2333322 2333322 136
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCch------hHHHHHHHHHHHHHHHHh--
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE------GRRRAIQAQEGVANLRNN-- 262 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fE------G~~r~~~A~~gL~~L~~~-- 262 (430)
.+.|.++|+|+|.||++.+.-.........-+++.|++.|+.-+-.-......+ ...........+++..+.
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~ 134 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESG 134 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhcc
Confidence 788999999999999988765555667889999999999988776555444431 123333344444442222
Q ss_pred -hcccccCccc--cccHHHHHHH--HhhcCeeEEEEEEec-------CCchHHHHHHHHHhCCCCcCCcccc-CceEEEE
Q 014098 263 -VDTLIIPGLV--NVDFADVRAI--MKDAGSSLMGIGTAT-------GKSRARDAALNAIQSPLLDIGIETA-TGIVWNI 329 (430)
Q Consensus 263 -vD~lI~pglI--NvDfaDvk~I--l~~~G~A~mGiG~a~-------G~~ra~~Av~~AL~sPLLd~~i~~A-~gvLvnI 329 (430)
--++|.+|+. |+- ..+... +......+.-.+.+. -.+..-+++-.+|..| ... ++-.+++
T Consensus 135 i~~t~i~~g~f~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p------~~~~~~~~~~~ 207 (233)
T PF05368_consen 135 IPYTIIRPGFFMENLL-PPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDP------EKHNNGKTIFL 207 (233)
T ss_dssp SEBEEEEE-EEHHHHH-TTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSG------GGTTEEEEEEE
T ss_pred ccceeccccchhhhhh-hhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcCh------HHhcCCEEEEe
Confidence 2344456642 211 001111 111111111111111 0123334555666543 222 4555666
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q 014098 330 TGGTDLTLFEVNTAAEVIY 348 (430)
Q Consensus 330 ~gg~dl~L~Ev~~a~~~I~ 348 (430)
.+ ..+|+.|+.++++...
T Consensus 208 ~~-~~~t~~eia~~~s~~~ 225 (233)
T PF05368_consen 208 AG-ETLTYNEIAAILSKVL 225 (233)
T ss_dssp GG-GEEEHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHH
Confidence 54 5689998888777653
No 32
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.66 E-value=0.14 Score=45.96 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=63.6
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh-------hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA-------MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~-------L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+||.|||. |..|..++..|...++ .-|...+|.+.+. |+........+..+...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~----------------- 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG----------------- 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES-----------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccc-----------------
Confidence 69999999 9999999999888754 4567778886432 22111111233333321
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCc-------HHHHHHHHHHc---C-CcEEEEEeccCC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKSM---G-ILTVGIATVPFC 242 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGa-------aPvIA~~AKe~---g-iltVaIVTlPF~ 242 (430)
..+.++++|+|+++||.--..|.-- ++++.++++++ + --.+.|||-|-.
T Consensus 63 -------~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd 122 (141)
T PF00056_consen 63 -------DYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD 122 (141)
T ss_dssp -------SGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred -------cccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence 1567899999999999854333322 55665555443 2 235667777854
No 33
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.23 E-value=0.31 Score=43.03 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=29.6
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
+|.|||+|+.|+.++..|...++. ++..+|-|.-...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcc
Confidence 589999999999999999998763 4667887755443
No 34
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.11 E-value=0.3 Score=46.26 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
......+|.|||+||.|+.++..|...++. ++..+|-|.-.+.+.. ..++..++. .| ..+...+++.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sNL~----Rq~l~~~~d---iG----~~Ka~~~~~~ 83 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSNLQ----RQILFTEED---VG----RPKVEVAAQR 83 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcccchh----hhhccChhh---CC----ChHHHHHHHH
Confidence 345677999999999999999999998653 4566777754443321 111111110 11 1122222111
Q ss_pred -----------------hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 190 -----------------SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 190 -----------------~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+.+.+.+.++++|+||.+..- --+--.+.+.+++.+++.|..
T Consensus 84 l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~-----~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 84 LRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDN-----FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCC-----HHHHHHHHHHHHHcCCCEEEE
Confidence 123355677889987765421 134455778888888776554
No 35
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.88 E-value=0.27 Score=50.45 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
+......+|.|||+|+.|+.++..|.+.++. ++..+|-|.-.+++.
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg--~i~lvD~D~ve~sNL 64 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIG--KLTIADRDYVEWSNL 64 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCccccccc
Confidence 3445667999999999999999999998642 566788887665543
No 36
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.86 E-value=0.52 Score=44.65 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|...++. ++..+|.|.-...+
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~GVg--~i~lvD~d~ve~sn 58 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVSTED 58 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCcCChhc
Confidence 34567999999999999999999998764 36678887655444
No 37
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.80 E-value=0.58 Score=47.68 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=48.7
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH-----hhhcCCCC----CCceEEcCCccCCCCCCCCCchHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ-----AMKVSPVI----PENRLQIGCDLTRGLGAGGNPSVGM 184 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q-----~L~~s~~~----a~~ki~iG~~~t~GlGaG~dP~vG~ 184 (430)
..||.|||.|..|..++..+...++. +++.+|.|.+ +|+..... ...++...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~--~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~----------------- 66 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLG--DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT----------------- 66 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-----------------
Confidence 36999999999999999988877763 4556665544 33322110 01122210
Q ss_pred HHHHHhHHHHHHHhcCCCEEEEEccCCCCCCC
Q 014098 185 NAANESKVAIEEAISGADMIFVTAGMGGGTGT 216 (430)
Q Consensus 185 ~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGT 216 (430)
.+ .+.++++|+|++++|.++..|.
T Consensus 67 ----~d----~~~l~~aDiVI~tag~~~~~~~ 90 (321)
T PTZ00082 67 ----NN----YEDIAGSDVVIVTAGLTKRPGK 90 (321)
T ss_pred ----CC----HHHhCCCCEEEECCCCCCCCCC
Confidence 01 2468999999999999876543
No 38
>PRK06153 hypothetical protein; Provisional
Probab=93.76 E-value=0.32 Score=51.21 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
....+|.|||+||.|+.+++.|.+.++ -++..+|-|.-...+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SN 215 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHN 215 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEecccc
Confidence 345799999999999999999999976 367778888665544
No 39
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.41 Score=46.31 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=67.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc-CCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-SPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~-s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+++.|||+|..|..++..|.+. |.+.++++.|...... ....-......|.. . +.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~--------t-----------~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDRDEERVEEFLADELDTHVVIGDA--------T-----------DEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHhhhhcceEEEEecC--------C-----------CHHH
Confidence 5899999999999999999886 5778999999988765 11001334444432 2 3445
Q ss_pred HHHH-hcCCCEEEEEccCCCCCCC-CcHHHHHHHHHH-cCCcE-EEEEecc
Q 014098 194 IEEA-ISGADMIFVTAGMGGGTGT-GAAPVIAGIAKS-MGILT-VGIATVP 240 (430)
Q Consensus 194 I~~~-L~gaD~VfI~AGLGGGTGT-GaaPvIA~~AKe-~gilt-VaIVTlP 240 (430)
++++ ++++|+++++. |. -..-+++.+|++ +|++. ++-+.-|
T Consensus 59 L~~agi~~aD~vva~t------~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 59 LEEAGIDDADAVVAAT------GNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HHhcCCCcCCEEEEee------CCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 5665 78999998874 34 456677788865 78766 4444334
No 40
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.69 E-value=0.67 Score=40.62 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh---
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES--- 190 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~--- 190 (430)
+.||.|+|+|+-|+.++..|...++ -++..+|-|.-...+.. ..+....+. .|. ..-+..++...+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~----r~~~~~~~~---vG~-~Ka~~~~~~l~~~np~ 71 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLN----RQFLYTEED---VGK-NKAEAAKERLQEINPD 71 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCC----TCTTS-GGG---TTS-BHHHHHHHHHHHHSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC--CceeecCCcceeecccc----ccccccccc---chh-HHHHHHHHHHHHhcCc
Confidence 4689999999999999999999976 34667887765544432 111111100 111 0011111111111
Q ss_pred -----------HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEec
Q 014098 191 -----------KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATV 239 (430)
Q Consensus 191 -----------~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTl 239 (430)
.+.+.+.++++|+||.+..= --+-..+.+++++.+++.|..-+.
T Consensus 72 ~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~-----~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 72 VEVEAIPEKIDEENIEELLKDYDIVIDCVDS-----LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp SEEEEEESHCSHHHHHHHHHTSSEEEEESSS-----HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred eeeeeeecccccccccccccCCCEEEEecCC-----HHHHHHHHHHHHHcCCCEEEEEee
Confidence 24455666789988776221 234556778889999888776443
No 41
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.53 E-value=0.41 Score=49.19 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
+......+|.|||+||-|+.++..|.+.++. ++..+|.|.-.+.+.
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNL 64 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHc
Confidence 3445678999999999999999999988652 567789887666554
No 42
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=93.32 E-value=0.38 Score=52.12 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCCCCCchHHHHHHHHhHHHHHHHhcCCC---EEEEEccCCCCCCCCcHHHHHHHHHH-cC-CcEEEEEeccCCc-----
Q 014098 174 LGAGGNPSVGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTVGIATVPFCF----- 243 (430)
Q Consensus 174 lGaG~dP~vG~~aA~e~~e~I~~~L~gaD---~VfI~AGLGGGTGTGaaPvIA~~AKe-~g-iltVaIVTlPF~f----- 243 (430)
.|.|.+--.+.+..++-.+.|+..++.|| .+.|+..++||| +|.+..+.+..++ .+ ..++..+..|...
T Consensus 121 fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~ 199 (493)
T cd06060 121 FGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASS 199 (493)
T ss_pred cccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCccccccc
Confidence 35555544455566777888999999888 578999999999 8999988887765 44 2333444466542
Q ss_pred -hhHHHHHHHHHHHHHHHHhhcccc
Q 014098 244 -EGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 244 -EG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
+...+.-|+.-++..|.+++|.++
T Consensus 200 ~~~vv~~yNs~LSl~~L~e~sdl~v 224 (493)
T cd06060 200 DKNSIRVLNTALGLAQLSEHSSLFV 224 (493)
T ss_pred chhHHHHHHHHHHHHHHHhcCCEEE
Confidence 344567789999999999999887
No 43
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.31 E-value=0.88 Score=44.51 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
......+|.|+|+||.|+.++..|...++. ++..+|-|.-.+.+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNL 64 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCc
Confidence 344567999999999999999999998764 456688887666553
No 44
>PRK05086 malate dehydrogenase; Provisional
Probab=93.31 E-value=0.74 Score=46.70 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=57.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh----hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA----MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~----L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
+||.|||. |+.|..++..|........++.+++.+... |+.........+. | .
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~-~--------~------------- 58 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIK-G--------F------------- 58 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEE-E--------e-------------
Confidence 58999999 999999998875532234566666643211 2211100001111 1 0
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCC---C-------cHHHHHHHHHHcCCc-EEEEEeccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGT---G-------AAPVIAGIAKSMGIL-TVGIATVPFC 242 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGT---G-------aaPvIA~~AKe~gil-tVaIVTlPF~ 242 (430)
+.+++.+.++++|+||+++|.--..|. - +...|++..++.+.. .|.++|=|-.
T Consensus 59 ~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D 122 (312)
T PRK05086 59 SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVN 122 (312)
T ss_pred CCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 012345677899999999998544431 0 233333344444543 3556666754
No 45
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.90 E-value=0.57 Score=45.01 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
....+.+|.|||+||.|+.++..|...++. ++..+|-|.-...+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN 60 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVVELSN 60 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEEcCcc
Confidence 345567999999999999999999998763 46677777655443
No 46
>PRK08328 hypothetical protein; Provisional
Probab=92.60 E-value=0.89 Score=44.07 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|...++.. +..+|-|.-.+.+
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~--i~lvD~D~ve~sN 66 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGR--ILLIDEQTPELSN 66 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCccChhh
Confidence 345678999999999999999999987643 4557777665544
No 47
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.53 E-value=15 Score=38.17 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
....++|.|+|. |..|..++.+|++++ .+.+++.-+.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R~~ 94 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAREK 94 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEech
Confidence 345678999997 788999999998864 5655555443
No 48
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.52 E-value=0.84 Score=45.44 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
+||.|||.|..|..++..+...++. +++.+|.|.+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~--ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG--DVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe--EEEEEECCCchh
Confidence 6999999999999999998877643 788888765543
No 49
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.37 E-value=1.2 Score=45.20 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=46.6
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc-----HHhhhcCCCCC-----CceEEcCCccCCCCCCCCCchHHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD-----AQAMKVSPVIP-----ENRLQIGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD-----~q~L~~s~~~a-----~~ki~iG~~~t~GlGaG~dP~vG~~ 185 (430)
||.|||.|..|..++..|+..++-+ +++.+|.+ .++|+.....+ ..++.-| |
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~-elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~-----------~------ 62 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFS-EIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG-----------D------ 62 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCC-EEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC-----------C------
Confidence 7999999999999999998876533 45555543 33333322111 1122211 1
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.+.++++|+|+|+||.-=..|
T Consensus 63 ---------y~~~~~aDivvitaG~~~kpg 83 (307)
T cd05290 63 ---------YDDCADADIIVITAGPSIDPG 83 (307)
T ss_pred ---------HHHhCCCCEEEECCCCCCCCC
Confidence 467899999999999854333
No 50
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.36 E-value=2.6 Score=46.07 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCC-CchHHHHHHHHh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGG-NPSVGMNAANES 190 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~-dP~vG~~aA~e~ 190 (430)
....++.|+|.|.+|..++..+...+ ...++++.+...++.......+-+.+... ..|-+.|+ --++..+-.+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG---A~V~v~d~~~~rle~a~~lGa~~v~v~~~-e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG---AIVRAFDTRPEVKEQVQSMGAEFLELDFK-EEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEecccc-ccccccccceeecCHHHHHHH
Confidence 44689999999999999998887764 56778888777665432111223344321 23333333 223333444445
Q ss_pred HHHHHHHhcCCCEEEEEccCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGG 212 (430)
++.+.+.++++|+||-++=.-|
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG 259 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPG 259 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCC
Confidence 5667778889999977764544
No 51
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.25 E-value=8.7 Score=37.56 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=47.9
Q ss_pred EEEEee-CcchHHHHHHHHHcCC-CcceEEEEeCcHHhhhcCC-----CCC---CceEEcCCccCCCCCCCCCchHHHHH
Q 014098 117 IKVIGV-GGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKVSP-----VIP---ENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 117 IkVIGV-GGaG~NiV~~m~~~~~-~gve~iaiNTD~q~L~~s~-----~~a---~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
|.|||. |..|..++..+...+. ...+.+.+|.|...|.... ... ..++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~------------------- 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSIT------------------- 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEEC-------------------
Confidence 579999 8889999998877753 3467778888664433210 000 1122211
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGT 214 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGT 214 (430)
.+..+.++++|+|++++|-++..
T Consensus 62 -----~d~~~~~~~aDiVv~t~~~~~~~ 84 (263)
T cd00650 62 -----DDPYEAFKDADVVIITAGVGRKP 84 (263)
T ss_pred -----CchHHHhCCCCEEEECCCCCCCc
Confidence 12367789999999999987765
No 52
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.23 E-value=1 Score=46.20 Aligned_cols=133 Identities=15% Similarity=0.177 Sum_probs=82.4
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcc-eEEEEeCcHHhhhcCCCC-CCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGV-EFWIVNTDAQAMKVSPVI-PENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gv-e~iaiNTD~q~L~~s~~~-a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
|.|+|.|..|.-++..|.++. .+ ++++.+-+...++..... ...++..- ++-..+.+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va~r~~~~~~~~~~~~~~~~~~~~-----------------~~d~~~~~~l 61 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVADRNPEKAERLAEKLLGDRVEAV-----------------QVDVNDPESL 61 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEEESSHHHHHHHHT--TTTTEEEE-----------------E--TTTHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEEECCHHHHHHHHhhccccceeEE-----------------EEecCCHHHH
Confidence 789999999999999998774 33 778888887776543110 01111111 0111456679
Q ss_pred HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc------c
Q 014098 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI------I 268 (430)
Q Consensus 195 ~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI------~ 268 (430)
.+.++++|+|+-++|-- ..+-|++.|-+.|+..|- .-| .......+.+..+....++ .
T Consensus 62 ~~~~~~~dvVin~~gp~------~~~~v~~~~i~~g~~yvD---~~~-------~~~~~~~l~~~a~~~g~~~l~~~G~~ 125 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF------FGEPVARACIEAGVHYVD---TSY-------VTEEMLALDEEAKEAGVTALPGCGFD 125 (386)
T ss_dssp HHHHTTSSEEEE-SSGG------GHHHHHHHHHHHT-EEEE---SS--------HHHHHHHCHHHHHHTTSEEE-S-BTT
T ss_pred HHHHhcCCEEEECCccc------hhHHHHHHHHHhCCCeec---cch-------hHHHHHHHHHHHHhhCCEEEeCcccc
Confidence 99999999999987653 678889999999988666 222 2233344444444455444 6
Q ss_pred CccccccHHHHHHHHh
Q 014098 269 PGLVNVDFADVRAIMK 284 (430)
Q Consensus 269 pglINvDfaDvk~Il~ 284 (430)
||+.|+=-..+..-|.
T Consensus 126 PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 126 PGLSNLLARYAADELD 141 (386)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhh
Confidence 8888877666666665
No 53
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.95 E-value=1.4 Score=44.76 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
...||.|||.|..|..+...+...++ .+.+.+|.|.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~--~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL--GDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC--CeEEEEECCC
Confidence 35699999999999998888877765 3566667654
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.71 E-value=0.4 Score=42.49 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=48.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC-CCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~-~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
.....++.|||.||+|..++.+|.+.+.+. ...+|=+.+......- -....+.+ .
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~--i~i~nRt~~ra~~l~~~~~~~~~~~----------------------~ 64 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKE--ITIVNRTPERAEALAEEFGGVNIEA----------------------I 64 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSE--EEEEESSHHHHHHHHHHHTGCSEEE----------------------E
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCE--EEEEECCHHHHHHHHHHcCccccce----------------------e
Confidence 345679999999999999999999886543 4567755443322100 00011111 1
Q ss_pred hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
..+++.+.+..+|+||-+.+.|-
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SSTTS
T ss_pred eHHHHHHHHhhCCeEEEecCCCC
Confidence 24455678889999998866543
No 55
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.68 E-value=0.74 Score=44.15 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=33.8
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|.+.++. ++..+|-|.-.+.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg--~i~lvD~D~ve~sN 67 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVEPSN 67 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEecccc
Confidence 34567899999999999999999998763 46778888655444
No 56
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.36 E-value=1.3 Score=44.48 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
......+|.|||+||.|+.++..|.+.++. ++..+|.|.-...+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sN 69 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIG--AITLIDMDDVCVTN 69 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCEecccc
Confidence 345667899999999999999999999764 45667777665544
No 57
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.28 E-value=0.89 Score=46.92 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
......+|.|||+||.|+.++..|...++. ++..+|.|.-.+.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sN 67 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVG--HITIIDDDTVDLSN 67 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcccc
Confidence 344567999999999999999999998774 35668887655544
No 58
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.11 E-value=1.9 Score=44.09 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~g----ve~iaiNT 148 (430)
+..||.|||. |..|.+++..|...++-+ .+++.+|.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 4689999999 999999999998887643 36666666
No 59
>PRK08223 hypothetical protein; Validated
Probab=90.85 E-value=1.9 Score=43.82 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
.....+|.|||+||.|+.++.+|...++. ++..+|-|.-.+++.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNL 67 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDVFELRNF 67 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCCcchhcc
Confidence 34567999999999999999999999874 356678877666553
No 60
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.74 E-value=1.8 Score=41.05 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
....+|.|||+||.|+.++..|...++.. +..+|.|.-...+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~--i~lvD~d~ve~sn 60 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGS--LTILDDRTVTEED 60 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCE--EEEEECCcccHhh
Confidence 45678999999999999999999987633 5567877654443
No 61
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.73 E-value=0.34 Score=45.56 Aligned_cols=79 Identities=28% Similarity=0.368 Sum_probs=44.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh----
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES---- 190 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~---- 190 (430)
|||.|||.|=.|.-.+-.|.+. |.+.+.+|.|.+..+... ..+..+. +|.+.+-..+.-
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~D~~~~~v~~l~---~g~~p~~-----------E~~l~~ll~~~~~~~~ 63 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGVDIDEEKVEALN---NGELPIY-----------EPGLDELLKENVSAGR 63 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEEE-S-HHHHHHHH---TTSSSS------------CTTHHHHHHHHHHTTS
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEEEeCChHHHHHHh---hcccccc-----------ccchhhhhcccccccc
Confidence 6899999999999999999886 588999999998665432 1222222 233332222111
Q ss_pred ---HHHHHHHhcCCCEEEEEccC
Q 014098 191 ---KVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 191 ---~e~I~~~L~gaD~VfI~AGL 210 (430)
...+.++++++|++||+.+.
T Consensus 64 l~~t~~~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 64 LRATTDIEEAIKDADVVFICVPT 86 (185)
T ss_dssp EEEESEHHHHHHH-SEEEE----
T ss_pred chhhhhhhhhhhccceEEEecCC
Confidence 12355667788999888763
No 62
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.70 E-value=1.7 Score=44.05 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
....+|.|+|+||.|+-++..|...++.. +..+|.|.-.+.... ..+.+.+ -++|+.-|+...
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~--itI~D~d~ve~snL~----rqf~~~~-----------~dIGk~Kaea~~ 79 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKS--VTLHDTKPCSWSDLS----SQFYLRE-----------EDIGKNRAEASQ 79 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCe--EEEEcCCccchhhcc----cCccCCh-----------HHhCHHHHHHHH
Confidence 45678999999999999999999987754 455777765554321 2233332 234555566666
Q ss_pred HHHHHHhcCCCEEEE
Q 014098 192 VAIEEAISGADMIFV 206 (430)
Q Consensus 192 e~I~~~L~gaD~VfI 206 (430)
+++++.=..+.+-.+
T Consensus 80 ~~L~eLNp~V~V~~~ 94 (286)
T cd01491 80 ARLAELNPYVPVTVS 94 (286)
T ss_pred HHHHHHCCCCEEEEE
Confidence 666665555554443
No 63
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.60 E-value=2.3 Score=43.25 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH-----HhhhcCCCC---CCceEEcCCccCCCCCCCCCchHHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA-----QAMKVSPVI---PENRLQIGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~-----q~L~~s~~~---a~~ki~iG~~~t~GlGaG~dP~vG~~ 185 (430)
..||.|||.|..|..++..|...++ ..+++.+|.+. ++++..... ...++... +
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~----------~------- 64 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL-ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD----------K------- 64 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC----------C-------
Confidence 5699999999999999998887764 34555666422 233222210 11233221 1
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCCCCCC-------CCcHHHHHHHHHHc---CC-cEEEEEeccCC
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMGGGTG-------TGAAPVIAGIAKSM---GI-LTVGIATVPFC 242 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLGGGTG-------TGaaPvIA~~AKe~---gi-ltVaIVTlPF~ 242 (430)
++ +.++++|+|+|+||..=-.| ..-+|++-++++++ +- -.+-+||=|-.
T Consensus 65 ----dy----~~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d 124 (312)
T cd05293 65 ----DY----SVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD 124 (312)
T ss_pred ----CH----HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH
Confidence 11 24899999999998743333 12255555555443 32 23455565554
No 64
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.52 E-value=1.5 Score=45.51 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=63.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
++|.|+|.|..|..++..|.+. +.++++++.|.+.+....-....++..|.. .+.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~---g~~v~vid~~~~~~~~~~~~~~~~~~~gd~-------------------~~~~~l 58 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE---NNDVTVIDTDEERLRRLQDRLDVRTVVGNG-------------------SSPDVL 58 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcCEEEEEeCC-------------------CCHHHH
Confidence 5799999999999999999775 578899999888766432101223333321 123344
Q ss_pred HHH-hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHc-CCc-EEEEE
Q 014098 195 EEA-ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GIL-TVGIA 237 (430)
Q Consensus 195 ~~~-L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~-gil-tVaIV 237 (430)
.++ ++++|.|+++.+= -...-.++..+|++ +.. +|+.+
T Consensus 59 ~~~~~~~a~~vi~~~~~-----~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 59 REAGAEDADLLIAVTDS-----DETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHcCCCcCCEEEEecCC-----hHHHHHHHHHHHHhcCCCeEEEEE
Confidence 555 7899999887631 24455677888887 544 44444
No 65
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.50 E-value=1.1 Score=43.75 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
..+.+|.|||+||.|+.++..|.+.++. ++..+|-|.-...+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sN 50 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSN 50 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchh
Confidence 3567899999999999999999998763 56677877655443
No 66
>PLN02427 UDP-apiose/xylose synthase
Probab=90.30 E-value=21 Score=36.36 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=48.1
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC------CCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP------VIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~------~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
+||.|.|. |-.|++++.+|++.+ +.+.++++.+...+.... ....-.+..|. +
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~D-l----------------- 74 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET--PHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRIN-I----------------- 74 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC--CCEEEEEecCchhhhhhhccccccCCCCeEEEEcC-C-----------------
Confidence 68999996 999999999999873 356666664332221110 00011122221 1
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
.+.+.+.++++++|.||=+|++...
T Consensus 75 -~d~~~l~~~~~~~d~ViHlAa~~~~ 99 (386)
T PLN02427 75 -KHDSRLEGLIKMADLTINLAAICTP 99 (386)
T ss_pred -CChHHHHHHhhcCCEEEEcccccCh
Confidence 1345577788889999999987654
No 67
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.21 E-value=3.5 Score=41.90 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=26.4
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..||.|||.|..|+.++-.|...++- -+...+|.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~-~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA-DELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 46999999999999999988877642 24555664
No 68
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=90.15 E-value=3.8 Score=39.11 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=62.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHc------CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~------~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+.-||.++|+|+.|.++-..-.+- .-.+...++..+|..-+..... + . | .
T Consensus 40 ~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~an--d----~--------~----------~ 95 (196)
T PRK10886 40 NGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIAN--D----R--------L----------H 95 (196)
T ss_pred cCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhc--c----c--------c----------H
Confidence 456899999999988754433221 1246667777777665543210 0 0 0 0
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF 241 (430)
.+--...+...+..-|++|++.+=| . |-..--++++||+.|+.+|+|...|.
T Consensus 96 ~~~f~~ql~~~~~~gDvli~iS~SG-~--s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 96 DEVYAKQVRALGHAGDVLLAISTRG-N--SRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCC-C--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 1223344566667789998886532 2 23355556788999999999976544
No 69
>PLN00106 malate dehydrogenase
Probab=90.12 E-value=1.6 Score=44.70 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=50.9
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~---q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
.....||.|||. |..|.+++..|...++-+ ++..+|-+. ++|+.....+..++. + ..
T Consensus 15 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~-el~L~Di~~~~g~a~Dl~~~~~~~~i~-~--------~~--------- 75 (323)
T PLN00106 15 GAPGFKVAVLGAAGGIGQPLSLLMKMNPLVS-ELHLYDIANTPGVAADVSHINTPAQVR-G--------FL--------- 75 (323)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCC-EEEEEecCCCCeeEchhhhCCcCceEE-E--------Ee---------
Confidence 344569999999 999999999888776532 444454332 223222211111221 0 00
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.-+++.+.++++|+|+++||..-..|
T Consensus 76 ---~~~d~~~~l~~aDiVVitAG~~~~~g 101 (323)
T PLN00106 76 ---GDDQLGDALKGADLVIIPAGVPRKPG 101 (323)
T ss_pred ---CCCCHHHHcCCCCEEEEeCCCCCCCC
Confidence 11235678999999999999976654
No 70
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.09 E-value=1.9 Score=43.09 Aligned_cols=105 Identities=18% Similarity=0.371 Sum_probs=58.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
...++.|||.||+|..++..|.+.++. +...+|-|.+..+... ..+ +... +.. . ....+
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~--~I~I~nR~~~ka~~la----~~l--~~~~---------~~~-~---~~~~~ 184 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVE--RLTIFDVDPARAAALA----DEL--NARF---------PAA-R---ATAGS 184 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHH----HHH--HhhC---------CCe-E---EEecc
Confidence 446899999999999999999887653 3566776654332210 000 0000 000 0 00012
Q ss_pred HHHHHhcCCCEEEEE--ccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 193 AIEEAISGADMIFVT--AGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~--AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
.+.+.+.++|+|+-+ +||-+... .|+-.+..+ .+..++=++..|..
T Consensus 185 ~~~~~~~~aDiVInaTp~Gm~~~~~---~~~~~~~l~-~~~~v~DivY~P~~ 232 (284)
T PRK12549 185 DLAAALAAADGLVHATPTGMAKHPG---LPLPAELLR-PGLWVADIVYFPLE 232 (284)
T ss_pred chHhhhCCCCEEEECCcCCCCCCCC---CCCCHHHcC-CCcEEEEeeeCCCC
Confidence 334567889999998 46644322 343333322 24456668888865
No 71
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.91 E-value=0.41 Score=38.97 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=29.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHhhh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMK 154 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iai-NTD~q~L~ 154 (430)
||.+||.|..|..++..|.+.+....+.+.+ +-+.+.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~ 40 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA 40 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH
Confidence 7999999999999999999997645665544 66655443
No 72
>PRK05442 malate dehydrogenase; Provisional
Probab=89.88 E-value=2.2 Score=43.81 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~g----ve~iaiNT 148 (430)
+..||.|||. |..|.+++-.|...++-+ +++..+|.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 4569999999 999999999888766533 36666665
No 73
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.50 E-value=2.4 Score=43.34 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~g----ve~iaiNT 148 (430)
..||.|||. |..|..++..|...++-+ .++..+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 999999999998877533 35666665
No 74
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.44 E-value=3.3 Score=41.59 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=27.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
||.|||.|+.|..++..|...++. .+++.+|-|.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~-~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIA-DELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCcc
Confidence 899999999999999999877642 35666665444
No 75
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.39 E-value=2.3 Score=41.64 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=35.4
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
+......+|.|||+||-|+.++..|...++. ++..+|.|.-.+.+
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN 71 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFDTVSLSN 71 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEECcch
Confidence 3445678999999999999999999998763 56778887665544
No 76
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.24 E-value=2.7 Score=43.13 Aligned_cols=142 Identities=19% Similarity=0.244 Sum_probs=77.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc---HHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD---AQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD---~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
...||.|||. |..|..++..|...++ .-++..+|-+ .++|+.....+..++. + ..||
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~Dl~~~~~~~~v~-~---------~td~-------- 67 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAADLSHIDTPAKVT-G---------YADG-------- 67 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCcccccchhhcCcCceEE-E---------ecCC--------
Confidence 3459999999 9999999988875543 2345555542 2233322221111111 0 0111
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCC---CC-------cHHHHHHHHHHcCCcEE-EEEeccCCchhHHHHHHHHHHHH
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTG---TG-------AAPVIAGIAKSMGILTV-GIATVPFCFEGRRRAIQAQEGVA 257 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTG---TG-------aaPvIA~~AKe~giltV-aIVTlPF~fEG~~r~~~A~~gL~ 257 (430)
....+.++++|+|+++||.--..| .. +...|++.+++.+..-+ -++|-|-.-- . ..+. +
T Consensus 68 ---~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~-~---~~~~---~ 137 (321)
T PTZ00325 68 ---ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNST-V---PIAA---E 137 (321)
T ss_pred ---CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH-H---HHHH---h
Confidence 123578899999999999965443 11 34445556666776544 4555554321 1 1111 1
Q ss_pred HHHHh----hcccccCccccccHHHHHHHHhh
Q 014098 258 NLRNN----VDTLIIPGLVNVDFADVRAIMKD 285 (430)
Q Consensus 258 ~L~~~----vD~lI~pglINvDfaDvk~Il~~ 285 (430)
.+.+. -+.+|-.| .+|=+-+++.+..
T Consensus 138 ~~~~~sg~p~~~viG~g--~LDs~R~r~~la~ 167 (321)
T PTZ00325 138 TLKKAGVYDPRKLFGVT--TLDVVRARKFVAE 167 (321)
T ss_pred hhhhccCCChhheeech--hHHHHHHHHHHHH
Confidence 22222 24445334 3888888888866
No 77
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.15 E-value=2.3 Score=43.70 Aligned_cols=104 Identities=26% Similarity=0.379 Sum_probs=60.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc-------HHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD-------AQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD-------~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
+||.|||.|+.|...+-.|..+.+ +-|+..+|-. ..+|............+...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~------------------ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-GSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD------------------ 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-cceEEEEEcccccccchhcchhhcchhccCceEEecC------------------
Confidence 589999999999999988865554 3355555543 22232221111122222210
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCCCC-------cHHHHHHHHHHc---CC-cEEEEEeccCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKSM---GI-LTVGIATVPFC 242 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTGTG-------aaPvIA~~AKe~---gi-ltVaIVTlPF~ 242 (430)
.. .+.++++|+|+|+||.-=.-|-- =+.++.+++++. +- -.|-|+|=|-.
T Consensus 62 ----~~-y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD 122 (313)
T COG0039 62 ----GD-YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD 122 (313)
T ss_pred ----CC-hhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH
Confidence 00 45789999999999887777621 144444454443 33 34556777755
No 78
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=0.87 Score=49.33 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=34.8
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHhhhc
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKV 155 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT-D~q~L~~ 155 (430)
..||+|||.||.||-.+..|...+.+.++.|-.|| |...|+.
T Consensus 12 ~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNR 54 (603)
T KOG2013|consen 12 SGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNR 54 (603)
T ss_pred cCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhh
Confidence 46899999999999999999999988888777776 5555543
No 79
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=88.57 E-value=5.4 Score=40.35 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
+||.|||. |..|..++..|...++.+ +++.++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~-~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVK-EINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 58999998 999999999998886532 56666653
No 80
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=88.45 E-value=24 Score=35.04 Aligned_cols=200 Identities=21% Similarity=0.239 Sum_probs=103.1
Q ss_pred eeCcchHHHHHHHHHcCC-CcceEEEEeCcHHhhhcCCCCCCce-EEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHh
Q 014098 121 GVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKVSPVIPENR-LQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAI 198 (430)
Q Consensus 121 GVGGaG~NiV~~m~~~~~-~gve~iaiNTD~q~L~~s~~~a~~k-i~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L 198 (430)
|.|-.|.++|.+|++++- ..|..+..+.+...+..... .+.+ +..|. + .+.+.+.+++
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~-~~~~~~~~~D-i------------------~d~~~l~~a~ 64 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQK-SGVKEYIQGD-I------------------TDPESLEEAL 64 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhc-ccceeEEEec-c------------------ccHHHHHHHh
Confidence 456789999999999873 33444333333322111100 0111 33332 1 3578899999
Q ss_pred cCCCEEEEEccCCCCCC-----------CCcHHHHHHHHHHcCCcEEE------EEec-----cCC--ch----------
Q 014098 199 SGADMIFVTAGMGGGTG-----------TGAAPVIAGIAKSMGILTVG------IATV-----PFC--FE---------- 244 (430)
Q Consensus 199 ~gaD~VfI~AGLGGGTG-----------TGaaPvIA~~AKe~giltVa------IVTl-----PF~--fE---------- 244 (430)
+++|.||-+|....-.+ ..++--|.+.|++.++..+. ++.- |+. .|
T Consensus 65 ~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~ 144 (280)
T PF01073_consen 65 EGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLD 144 (280)
T ss_pred cCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccC
Confidence 99999999999865554 13455667888887755432 2221 111 01
Q ss_pred -hHHHHHHHHHHHHHHHH-------hhccc-ccCccc--cccH---HHHHHHHhhcCeeEEEEEEecCC------chHHH
Q 014098 245 -GRRRAIQAQEGVANLRN-------NVDTL-IIPGLV--NVDF---ADVRAIMKDAGSSLMGIGTATGK------SRARD 304 (430)
Q Consensus 245 -G~~r~~~A~~gL~~L~~-------~vD~l-I~pglI--NvDf---aDvk~Il~~~G~A~mGiG~a~G~------~ra~~ 304 (430)
-.+-...|+..+-+... ...++ |.|..| --|. .-+...++ .|...+-+|..... ..+..
T Consensus 145 ~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~vyV~NvA~ 223 (280)
T PF01073_consen 145 PYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVR-SGLFLFQIGDGNNLFDFVYVENVAH 223 (280)
T ss_pred chHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHH-hcccceeecCCCceECcEeHHHHHH
Confidence 11122334444333222 12333 345433 1221 11222332 33334444443221 34455
Q ss_pred HHHHHHhCCCCc-CCccccCceEEEEEeCCCCC-HHHHHH
Q 014098 305 AALNAIQSPLLD-IGIETATGIVWNITGGTDLT-LFEVNT 342 (430)
Q Consensus 305 Av~~AL~sPLLd-~~i~~A~gvLvnI~gg~dl~-L~Ev~~ 342 (430)
|.-.|.+. |++ ..-..+.|=.++|+.++-+. +.|+..
T Consensus 224 ahvlA~~~-L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~ 262 (280)
T PF01073_consen 224 AHVLAAQA-LLEPGKPERVAGQAYFITDGEPVPSFWDFMR 262 (280)
T ss_pred HHHHHHHH-hccccccccCCCcEEEEECCCccCcHHHHHH
Confidence 55555553 332 23567788899999887776 777753
No 81
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.42 E-value=2.1 Score=42.67 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=27.1
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
|.|||.|..|..++..|..+++. +.+.+|.|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~--eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc--EEEEEeCCCc
Confidence 57999999999999988877654 8888888754
No 82
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=87.93 E-value=3.2 Score=40.75 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=58.2
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEE-EeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~ia-iNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
+||.|+|+ |..|..++..+.+. +++++.+ ++.+...... . .. .|. ...+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~~-------~---~~-----~~i------------~~~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLVG-------Q---GA-----LGV------------AITD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccc-------c---CC-----CCc------------cccC
Confidence 68999999 99999999777654 5677655 5555432211 0 00 011 0123
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCch
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE 244 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fE 244 (430)
.+.++++++|+|+.++ + ......+++.|.+.|+.+| +-|+=|+.|
T Consensus 53 dl~~ll~~~DvVid~t-----~-p~~~~~~~~~al~~G~~vv-igttG~s~~ 97 (257)
T PRK00048 53 DLEAVLADADVLIDFT-----T-PEATLENLEFALEHGKPLV-IGTTGFTEE 97 (257)
T ss_pred CHHHhccCCCEEEECC-----C-HHHHHHHHHHHHHcCCCEE-EECCCCCHH
Confidence 3455566899998876 2 2334667788888899877 445555544
No 83
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=87.91 E-value=1.1 Score=47.58 Aligned_cols=77 Identities=21% Similarity=0.404 Sum_probs=53.4
Q ss_pred CeEEEEeeCcchH-HHHHHHHHc--CCCcceEEEEeCc-HHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH--
Q 014098 115 AKIKVIGVGGGGS-NAVNRMIES--SMTGVEFWIVNTD-AQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN-- 188 (430)
Q Consensus 115 ~kIkVIGVGGaG~-NiV~~m~~~--~~~gve~iaiNTD-~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~-- 188 (430)
+||.+||-|+.-. .++..|+.. .+..-+++.+|.| .+.|+... .++++.++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~-----------------------~~~~~~~~~~ 57 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVG-----------------------ALAKRMVKKA 57 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHH-----------------------HHHHHHHHhh
Confidence 5899999988755 577777763 3667889999999 78875421 01111111
Q ss_pred ------HhHHHHHHHhcCCCEEEEEccCCCCC
Q 014098 189 ------ESKVAIEEAISGADMIFVTAGMGGGT 214 (430)
Q Consensus 189 ------e~~e~I~~~L~gaD~VfI~AGLGGGT 214 (430)
+.-.+.+++|+|||.||+++..||-.
T Consensus 58 ~~~~~v~~t~d~~~al~gadfVi~~~~vg~~~ 89 (419)
T cd05296 58 GLPIKVHLTTDRREALEGADFVFTQIRVGGLE 89 (419)
T ss_pred CCCeEEEEeCCHHHHhCCCCEEEEEEeeCCcc
Confidence 11234689999999999999998843
No 84
>PLN02602 lactate dehydrogenase
Probab=87.52 E-value=5.5 Score=41.36 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=26.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
.||.|||.|..|..++-.|...++.+ +++.+|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~-el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLAD-ELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCC-EEEEEeC
Confidence 69999999999999999988776532 5555554
No 85
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=87.46 E-value=28 Score=33.38 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.7
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
||.|+|. |..|..++.+|.+. |.+.++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~---g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE---GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc---CCEEEEeCC
Confidence 5899996 99999999999886 456655543
No 86
>PRK05865 hypothetical protein; Provisional
Probab=87.20 E-value=23 Score=41.19 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=97.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.|.|. |..|..++.+|.+. |.++++++.+.... .. ....+..+. + .+.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~---G~~Vv~l~R~~~~~--~~--~~v~~v~gD-L------------------~D~~~ 54 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ---GHEVVGIARHRPDS--WP--SSADFIAAD-I------------------RDATA 54 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---cCEEEEEECCchhh--cc--cCceEEEee-C------------------CCHHH
Confidence 57999996 99999999999886 45666666442211 00 011122221 1 23456
Q ss_pred HHHHhcCCCEEEEEccCCCCC---CCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc-cC
Q 014098 194 IEEAISGADMIFVTAGMGGGT---GTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI-IP 269 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGT---GTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI-~p 269 (430)
+.++++++|.||-+|+..... -.-.+--+++.+++.++..+.++..+. + ..++..+.+ .-.+.+| .+
T Consensus 55 l~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~----K---~aaE~ll~~--~gl~~vILRp 125 (854)
T PRK05865 55 VESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH----Q---PRVEQMLAD--CGLEWVAVRC 125 (854)
T ss_pred HHHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH----H---HHHHHHHHH--cCCCEEEEEe
Confidence 677788899999999764321 011233456777888876555554443 1 122222211 1234444 33
Q ss_pred ccc-cccHHH-HHHHHhhcCeeEEEEEEecC------CchHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCCHHHHH
Q 014098 270 GLV-NVDFAD-VRAIMKDAGSSLMGIGTATG------KSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVN 341 (430)
Q Consensus 270 glI-NvDfaD-vk~Il~~~G~A~mGiG~a~G------~~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~L~Ev~ 341 (430)
+.+ .-.... +..++ ...+++.|.... -+.+-+|+..++..+ ...+-.+||.++..+++.|+-
T Consensus 126 ~~VYGP~~~~~i~~ll---~~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~-------~~~ggvyNIgsg~~~Si~EIa 195 (854)
T PRK05865 126 ALIFGRNVDNWVQRLF---ALPVLPAGYADRVVQVVHSDDAQRLLVRALLDT-------VIDSGPVNLAAPGELTFRRIA 195 (854)
T ss_pred ceEeCCChHHHHHHHh---cCceeccCCCCceEeeeeHHHHHHHHHHHHhCC-------CcCCCeEEEECCCcccHHHHH
Confidence 322 111111 22222 122333332211 133445555555432 112336899998889999887
Q ss_pred HHHHH
Q 014098 342 TAAEV 346 (430)
Q Consensus 342 ~a~~~ 346 (430)
+++..
T Consensus 196 e~l~~ 200 (854)
T PRK05865 196 AALGR 200 (854)
T ss_pred HHHhh
Confidence 76553
No 87
>PRK15076 alpha-galactosidase; Provisional
Probab=87.11 E-value=3.2 Score=44.13 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=47.8
Q ss_pred CeEEEEeeCcchHH--HHHHHH-HcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGVGGGGSN--AVNRMI-ESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGVGGaG~N--iV~~m~-~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+||.|||.|..|.- .+..+. ...+.+.+++.+|.|.+.++.... . +-.- ..-+|. +.. -..-
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~----l--~~~~-~~~~~~--~~~------i~~t 66 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEI----V--ARKL-AESLGA--SAK------ITAT 66 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHH----H--HHHH-HHhcCC--CeE------EEEE
Confidence 58999999997744 233444 344666789999999877653110 0 0000 000000 000 0001
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
....+++++||+||++++.||
T Consensus 67 tD~~eal~dADfVv~ti~vg~ 87 (431)
T PRK15076 67 TDRREALQGADYVINAIQVGG 87 (431)
T ss_pred CCHHHHhCCCCEEeEeeeeCC
Confidence 124688999999999999985
No 88
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.91 E-value=5.1 Score=42.30 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCeEEEEeeCcchHHH-HHHHHHcCCCcceEEEEeCcH----HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 112 NNEAKIKVIGVGGGGSNA-VNRMIESSMTGVEFWIVNTDA----QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~Ni-V~~m~~~~~~gve~iaiNTD~----q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
....+|.|||+|+.|..+ +..|.+. |.++.+.|.+. ..|... .-++..|. +
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~---G~~V~~~D~~~~~~~~~l~~~----gi~~~~~~----------~------- 60 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNL---GYKVSGSDLKESAVTQRLLEL----GAIIFIGH----------D------- 60 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhC---CCeEEEECCCCChHHHHHHHC----CCEEeCCC----------C-------
Confidence 344689999999999995 6666554 66777766532 122211 11221111 1
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.++++|+|++.-|+-- -.|.+ +.|++.|+++++
T Consensus 61 --------~~~~~~~d~vv~spgi~~-----~~~~~-~~a~~~~i~i~~ 95 (461)
T PRK00421 61 --------AENIKDADVVVYSSAIPD-----DNPEL-VAARELGIPVVR 95 (461)
T ss_pred --------HHHCCCCCEEEECCCCCC-----CCHHH-HHHHHCCCcEEe
Confidence 123467899998877742 34555 556777777765
No 89
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.75 E-value=1.8 Score=46.21 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=51.6
Q ss_pred CeEEEEeeCcch-HHHHHHHHHc--CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH--
Q 014098 115 AKIKVIGVGGGG-SNAVNRMIES--SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE-- 189 (430)
Q Consensus 115 ~kIkVIGVGGaG-~NiV~~m~~~--~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e-- 189 (430)
+||.|||-|+.= -.++.-|++. .+.+-+++.+|.|.+.|+... .++++.+++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~-----------------------~l~~~~~~~~g 57 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA-----------------------EAVKILFKENY 57 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH-----------------------HHHHHHHHhhC
Confidence 589999988752 2477777766 367788999999998886521 111221111
Q ss_pred ------hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 ------SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ------~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.-.+.+++|+|||.||...=.||
T Consensus 58 ~~~~v~~Ttdr~eAl~gADfVi~~irvGg 86 (437)
T cd05298 58 PEIKFVYTTDPEEAFTDADFVFAQIRVGG 86 (437)
T ss_pred CCeEEEEECCHHHHhCCCCEEEEEeeeCC
Confidence 12235889999999999887776
No 90
>PRK14852 hypothetical protein; Provisional
Probab=86.49 E-value=3.3 Score=48.46 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=64.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH--
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN-- 188 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~-- 188 (430)
...+.+|.|||+||.|+.++..|...|+. ++..+|-|.-.+.+.. ..+..... -+|-- .-+..++...
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG--~I~L~D~D~Ve~SNLN----RQ~l~~~~---dIG~~-Kaevaa~~l~~I 398 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIG--NFNLADFDAYSPVNLN----RQYGASIA---SFGRG-KLDVMTERALSV 398 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEecccccc----cccCCChh---hCCCh-HHHHHHHHHHHH
Confidence 34578999999999999999999999873 4666777766554431 11211111 01100 0111111111
Q ss_pred ------------HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 189 ------------ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 189 ------------e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
-+.+.+.+.++++|+|+- ++..-+ +-+--.+.+.|.+.+++.|.
T Consensus 399 NP~v~I~~~~~~I~~en~~~fl~~~DiVVD--a~D~~~-~~~rr~l~~~c~~~~IP~I~ 454 (989)
T PRK14852 399 NPFLDIRSFPEGVAAETIDAFLKDVDLLVD--GIDFFA-LDIRRRLFNRALELGIPVIT 454 (989)
T ss_pred CCCCeEEEEecCCCHHHHHHHhhCCCEEEE--CCCCcc-HHHHHHHHHHHHHcCCCEEE
Confidence 013445667789998774 332211 12335667778888888774
No 91
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.37 E-value=5.7 Score=40.56 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=47.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc---HHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD---AQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD---~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
+||.|||. |..|..++-.|...++ ..+++.+|-+ .++|+........++. ++.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~~a~g~alDL~~~~~~~~i~---------~~~~------------ 58 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIVNTPGVAADLSHINTPAKVT---------GYLG------------ 58 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecCccceeehHhHhCCCcceEE---------EecC------------
Confidence 58999999 9999999988877665 2355556554 1122221110011221 0000
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
-+++.+.++++|+|+|+||..=..|
T Consensus 59 ~~~~y~~~~daDivvitaG~~~k~g 83 (310)
T cd01337 59 PEELKKALKGADVVVIPAGVPRKPG 83 (310)
T ss_pred CCchHHhcCCCCEEEEeCCCCCCCC
Confidence 0124578999999999999854433
No 92
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.37 E-value=1.1 Score=46.46 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHhh
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAM 153 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT-D~q~L 153 (430)
.-||.|||.||-||-++..|.-.+...++.|-+|| |...|
T Consensus 40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL 80 (422)
T KOG2015|consen 40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL 80 (422)
T ss_pred hCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc
Confidence 37999999999999999999888887777766666 44444
No 93
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.35 E-value=2.8 Score=42.30 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=26.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
+||.|||.|..|..++-.|...++ ..+++.+|-+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~-~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL-ASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CCEEEEEECCc
Confidence 589999999999999998888754 23455666544
No 94
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.20 E-value=4.6 Score=41.31 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=50.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~g----ve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
.||.|||. |..|..++..|...++-+ .++..+|.+.. ++... -..+-+-.-.+. + ..+..+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~~~~~---g~~~Dl~d~~~~-~--~~~~~i------- 66 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-MKALE---GVVMELQDCAFP-L--LKGVVI------- 66 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-cCccc---eeeeehhhhccc-c--cCCcEE-------
Confidence 48999999 999999999888776533 34666666541 11110 112222111000 0 000000
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGT 216 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGT 216 (430)
.....+.++++|+|+++||.--..|.
T Consensus 67 -~~~~~~~~~~aDiVVitAG~~~~~g~ 92 (323)
T cd00704 67 -TTDPEEAFKDVDVAILVGAFPRKPGM 92 (323)
T ss_pred -ecChHHHhCCCCEEEEeCCCCCCcCC
Confidence 12346889999999999999766653
No 95
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=86.10 E-value=1.7 Score=48.48 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCcc--CCCCCCCCCchHHHHH
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDL--TRGLGAGGNPSVGMNA 186 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~--t~GlGaG~dP~vG~~a 186 (430)
+..+...||.|+|.|+.|+++|-.|+..|+..+. +++||.. +.+. +| ||+.. .+- .||++--+.
T Consensus 124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~--~vd~D~v-~SNl-----nR--IgEl~e~A~~----~n~~v~v~~ 189 (637)
T TIGR03693 124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFH--AIVTDAE-EHAL-----DR--IHELAEIAEE----TDDALLVQE 189 (637)
T ss_pred hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEE--EEecccc-chhh-----hH--HHHHHHHHHH----hCCCCceEe
Confidence 3345789999999999999999999999875554 5666654 2211 11 22110 000 011100000
Q ss_pred -HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcC
Q 014098 187 -ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230 (430)
Q Consensus 187 -A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~g 230 (430)
-..+-+.+.+.+++.|.|+.++.-+=- --+-.+-+.+.+.|
T Consensus 190 i~~~~~~dl~ev~~~~DiVi~vsDdy~~---~~Lr~lN~acvkeg 231 (637)
T TIGR03693 190 IDFAEDQHLHEAFEPADWVLYVSDNGDI---DDLHALHAFCKEEG 231 (637)
T ss_pred ccCCcchhHHHhhcCCcEEEEECCCCCh---HHHHHHHHHHHHcC
Confidence 002355677888999999998753110 12334445555555
No 96
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.93 E-value=1.9 Score=43.75 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=46.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIE 195 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~ 195 (430)
||.|||+||.||-++..|...++. ++..+|-|.-.+.+.. ..+++.+ -++|+.-|+...+.|+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg--~I~IvD~D~Ve~SNLn----RQfLf~~-----------~dIGk~KAevaa~~l~ 63 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDTIDVSNLN----RQFLFRE-----------KDIGKPKAEVAAKFVN 63 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccccC----cCcccCh-----------HHcchHHHHHHHHHHH
Confidence 689999999999999999998875 4556777766655432 2233332 2344444454455555
Q ss_pred HHhcCCCEEEE
Q 014098 196 EAISGADMIFV 206 (430)
Q Consensus 196 ~~L~gaD~VfI 206 (430)
+.-.++.+...
T Consensus 64 ~~np~v~I~~~ 74 (291)
T cd01488 64 DRVPGVNVTPH 74 (291)
T ss_pred HHCCCCEEEEE
Confidence 55444444433
No 97
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=85.88 E-value=3.8 Score=41.81 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=47.4
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~---q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
||.|||. |..|..++..|...++ ..+++.+|-+. ++|+..+.....++.- . .+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~-------~-~~~------------- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKG-------F-SGE------------- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEE-------e-cCC-------------
Confidence 6899999 9999999988877653 24566666433 2222222110111210 0 000
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
+...+.++++|+|+|+||..-..|
T Consensus 59 ~~~~~~~~daDivvitaG~~~~~g 82 (312)
T TIGR01772 59 EGLENALKGADVVVIPAGVPRKPG 82 (312)
T ss_pred CchHHHcCCCCEEEEeCCCCCCCC
Confidence 113578999999999999976655
No 98
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.79 E-value=4.2 Score=42.60 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=53.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH--------hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ--------AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q--------~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+||.|||+|++|-.++..|.+. |.+....|.... .|... ..++..|.. .++
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~---G~~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~g~~--------~~~------ 59 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQ---GWEVVVSDRNDSPELLERQQELEQE----GITVKLGKP--------LEL------ 59 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHC---CCEEEEECCCCchhhHHHHHHHHHc----CCEEEECCc--------cch------
Confidence 4799999999999998888776 456556664221 23221 224444321 111
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
+.+...+++.|+|++..|.- --.|.+ +.|++.|+++++
T Consensus 60 -----~~~~~~~~~~d~vv~s~gi~-----~~~~~~-~~a~~~~i~v~~ 97 (459)
T PRK02705 60 -----ESFQPWLDQPDLVVVSPGIP-----WDHPTL-VELRERGIEVIG 97 (459)
T ss_pred -----hhhhHHhhcCCEEEECCCCC-----CCCHHH-HHHHHcCCcEEE
Confidence 13445567899998876663 235655 455777777655
No 99
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=85.75 E-value=6.4 Score=39.54 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=24.8
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
|.|||.|..|+.++-.+...++- -++..+|.+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~-~el~l~D~~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA-SELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCc
Confidence 57999999999999888777542 3566677643
No 100
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.72 E-value=1.2 Score=39.19 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
....+|.|||.|+.|..++..|.+.+ ..+.+.+|.+.+.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~ 57 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHH
Confidence 34568999999999999999998765 345666777665543
No 101
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=85.64 E-value=9.3 Score=38.00 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEE-EEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFW-IVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~i-aiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
...+||.|||+|..|...+..|.+. ..+++.. +.+.|.+...... .+ .| .. ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~a~~~a----~~--~g--------~~-----------~~ 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQRHADFI----WG--LR--------RP-----------PP 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHHHHHHHH----Hh--cC--------CC-----------cc
Confidence 3458999999999999999888653 3567765 4566654432210 00 01 00 01
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
...+.+++.++|+|++++.- ..-..++..+-+.|..++.
T Consensus 58 ~~~~eell~~~D~Vvi~tp~------~~h~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 58 VVPLDQLATHADIVVEAAPA------SVLRAIVEPVLAAGKKAIV 96 (271)
T ss_pred cCCHHHHhcCCCEEEECCCc------HHHHHHHHHHHHcCCcEEE
Confidence 12234456789999999764 2344444444466876653
No 102
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.40 E-value=7.4 Score=38.85 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=31.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
++|.|||+|-.|.+++..|.+. +.+..+.|.+.+..+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~---g~~V~~~dr~~~~~~~ 38 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR---GHDCVGYDHDQDAVKA 38 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence 4799999999999999999886 4666778888776544
No 103
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=84.95 E-value=42 Score=33.08 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcC
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESS 137 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~ 137 (430)
+||.|.|. |..|++++++|.+.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC
Confidence 58999997 999999999998775
No 104
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=84.92 E-value=5 Score=42.35 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.9
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCc
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG 140 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~g 140 (430)
+..||.|||. |..|.+++..|...++-+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~ 71 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFG 71 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccC
Confidence 3689999999 999999999999888755
No 105
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=84.84 E-value=2.4 Score=41.62 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=30.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
||.|||+||.|+.++..|...++.. +..+|-|.-.+.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~--i~ivD~D~Ve~sN 38 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQ--IHVIDMDTIDVSN 38 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCe--EEEEeCCEEcchh
Confidence 5899999999999999999987643 4567777665544
No 106
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.62 E-value=1.7 Score=41.41 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcce-EEEEe-CcHHhhh
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVE-FWIVN-TDAQAMK 154 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve-~iaiN-TD~q~L~ 154 (430)
.+||.|||.|..|..++..+.+.+...++ .++.| .+.+.+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~ 46 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD 46 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH
Confidence 47899999999999999999887654554 55565 3444443
No 107
>PLN02688 pyrroline-5-carboxylate reductase
Probab=84.23 E-value=1.4 Score=42.67 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=31.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCC-CcceEEEE-eCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIV-NTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~-~gve~iai-NTD~q~L~ 154 (430)
+||.+||+|..|..++..|.+.+. ...++++. |.+.+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~ 42 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD 42 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH
Confidence 589999999999999999998763 34466777 76666543
No 108
>PLN02735 carbamoyl-phosphate synthase
Probab=84.16 E-value=26 Score=41.83 Aligned_cols=97 Identities=28% Similarity=0.477 Sum_probs=58.2
Q ss_pred CCCeEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch
Q 014098 113 NEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS 181 (430)
Q Consensus 113 ~~~kIkVIGVGGa-----------G~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~ 181 (430)
+-.||+|+|.|.. |..++..|.+. |++.+.+|++.......+-.++ ++.+.+. +++
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~---G~~Vi~vd~np~t~~~~~~~aD-~~yi~p~---------~~e 88 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE---GYEVVLINSNPATIMTDPETAD-RTYIAPM---------TPE 88 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHc---CCEEEEEeCCcccccCChhhCc-EEEeCCC---------CHH
Confidence 4568999999984 77889998776 6789999987743321111123 3444331 221
Q ss_pred HHHHHHHHhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHH--HHHHHcCCcEEE
Q 014098 182 VGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMGILTVG 235 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA--~~AKe~giltVa 235 (430)
.|.+.+ ++.|.||. ++||-||--.+-.++ .++..+|+..++
T Consensus 89 -----------~v~~ii~~e~~D~Iip--~~gg~~gl~la~~l~~~g~Le~~GI~~~G 133 (1102)
T PLN02735 89 -----------LVEQVIAKERPDALLP--TMGGQTALNLAVALAESGILEKYGVELIG 133 (1102)
T ss_pred -----------HHHHHHHHhCCCEEEE--CCCchhhHHHHHHHhhhCHHHHCCCEEEC
Confidence 233333 35676554 678877654444444 345667877666
No 109
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.95 E-value=2.9 Score=42.73 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~----gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..||.|+|. |..|..++..|...++- +.+.+.+|.+.. ..... ...+.+-.-.+.-+ ++-
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~---g~~~Dl~d~~~~~~---~~~-------- 66 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALE---GVVMELQDCAFPLL---KSV-------- 66 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-ccccc---ceeeehhhcccccc---CCc--------
Confidence 468999999 99999999999987753 357777776432 11110 11222211000000 010
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.......+.++++|+||++||.--..|
T Consensus 67 ~~~~~~~~~l~~aDiVI~tAG~~~~~~ 93 (325)
T cd01336 67 VATTDPEEAFKDVDVAILVGAMPRKEG 93 (325)
T ss_pred eecCCHHHHhCCCCEEEEeCCcCCCCC
Confidence 011335677889999999999965544
No 110
>COG2403 Predicted GTPase [General function prediction only]
Probab=83.52 E-value=3 Score=44.14 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhh--cccc-------------cCccccccHHHH-HH
Q 014098 218 AAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNV--DTLI-------------IPGLVNVDFADV-RA 281 (430)
Q Consensus 218 aaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~v--D~lI-------------~pglINvDfaDv-k~ 281 (430)
.+-.+++..+++|.. +++|++|--.-|- +..++-+-+.++.+.= ++.+ ..++..+||.++ +.
T Consensus 143 VS~~v~r~l~ergyr-v~vVrhPmiy~~~-~ieitve~~~k~edld~ha~t~eereeye~~I~tg~~vlAGvdy~~vlke 220 (449)
T COG2403 143 VSRYVARLLRERGYR-VCVVRHPMIYRGD-RIEITVERLAKLEDLDRHAATDEEREEYESYIPTGGGVLAGVDYGTVLKE 220 (449)
T ss_pred HHHHHHHHHHHcCCc-eEEEecCceecCC-chhhhHHHHhCHhhccccccchhhHHHHhhccccccceEeeeeHHHHHHH
Confidence 355677777888876 5566678776554 4455666555555421 1111 456788998775 33
Q ss_pred HHhhcCeeEEEEEEecCCc-------------hHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCCHHHHHHHHHHHH
Q 014098 282 IMKDAGSSLMGIGTATGKS-------------RARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIY 348 (430)
Q Consensus 282 Il~~~G~A~mGiG~a~G~~-------------ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~L~Ev~~a~~~I~ 348 (430)
--+.+. +-+=.++|.+ .|....+. +.+-+-+..|.-|+-++|+-.- +.+...+.++.+.|.
T Consensus 221 ~~~~aD---~IlwdGgnndfPfvkpd~~Ivvvda~rpg~e-i~~~pGe~~irlAD~VIItkve--ea~~~kvrkI~~~I~ 294 (449)
T COG2403 221 GEKEAD---FILWDGGNNDFPFVKPDLHIVVVDALRPGEE-IGSFPGELRIRLADLVIITKVE--EAMAEKVRKIVRNIE 294 (449)
T ss_pred Hhhhcc---EEEEeCCCCCCCcccCCeeEEEecCCCCchh-hccCCCceeeeeccEEEEeccc--ccchHHHHHHHHHHH
Confidence 322221 1111111110 00011111 2222235678888888777653 566778888888886
Q ss_pred hhcCCCccEEEe---eeeCC--CCCCeEEEEEEeecCCCC
Q 014098 349 DLVDPSANLIFG---AVIDK--SLSNQVSITLIATGFKGD 383 (430)
Q Consensus 349 ~~~~~~a~Ii~G---~~ide--~l~d~vrVTvIATGf~~~ 383 (430)
+. +|+|.|+.+ +..++ +++++ ||.++-|+-..-
T Consensus 295 ~i-NP~A~Vi~~~~~~~~~~~~~ieGK-rvlvvedaPt~t 332 (449)
T COG2403 295 EI-NPKAEVILAASVFRPDPPEDIEGK-RVLVVEDAPTST 332 (449)
T ss_pred hh-CCCcEEEecccccccCChhhcCCc-EEEEEecCCccc
Confidence 65 478999998 45555 55565 788888877543
No 111
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=83.26 E-value=5.3 Score=41.93 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.2
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
....+||.|||. |..|..+++.|.++ +.++...+-.+.++
T Consensus 35 ~~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~sa 75 (381)
T PLN02968 35 SEEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKA 75 (381)
T ss_pred cccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhc
Confidence 356779999999 67777777777666 56776666555444
No 112
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.23 E-value=6.9 Score=41.21 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+||.|||.|-.|..++-.|.+. |.+.+.+|.|.+.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR---QKQVIGVDINQHAVDT 41 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC---CCEEEEEeCCHHHHHH
Confidence 36899999999999999999887 4778899998887664
No 113
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.83 E-value=3.9 Score=38.91 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=31.2
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
.....+|.|||+||.|++++..|.+.++. ++..+|.|.-
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg--~i~lvD~D~v 56 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIG--KLILVDFDVV 56 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEECCCEE
Confidence 34567899999999999999999988542 4677888843
No 114
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.83 E-value=17 Score=40.53 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=60.3
Q ss_pred CCCCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch-HHHHH
Q 014098 109 PNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS-VGMNA 186 (430)
Q Consensus 109 ~~~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~-vG~~a 186 (430)
.+...+..|.|.|. |+.|..++.+|++. |.+.+++.-+.+.+..... .-..+.+. ..|+..... ...++
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~---G~~Vval~Rn~ekl~~l~~-~l~~~~L~-----~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKL---GFRVRAGVRSAQRAESLVQ-SVKQMKLD-----VEGTQPVEKLEIVEC 145 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHH-Hhhhhccc-----cccccccCceEEEEe
Confidence 33445567999997 89999999999987 4566665555444322100 00000000 000000000 00000
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCC----------CcHHHHHHHHHHcCCcEE
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGT----------GAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGT----------GaaPvIA~~AKe~giltV 234 (430)
=..+.+.+.+++.++|.||.++|.....-. -++-.+++.+++.++..|
T Consensus 146 DLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRI 203 (576)
T PLN03209 146 DLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHF 203 (576)
T ss_pred cCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 012355677789999999999876542100 124455677777665433
No 115
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.76 E-value=8.1 Score=40.05 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|...++. ++..+|-|.-.+.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~sN 174 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDHDVVDRSN 174 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEecchh
Confidence 34568999999999999999999998764 45667777554443
No 116
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=82.71 E-value=1.7 Score=43.00 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=35.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCC--------CcceEEEEeCcHHhhhcC
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSM--------TGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~--------~gve~iaiNTD~q~L~~s 156 (430)
....+|.|||+||-||.++..|.+.++ .+.++..+|-|.-...+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL 61 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV 61 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh
Confidence 457899999999999999999998752 245888899887665543
No 117
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=82.59 E-value=20 Score=34.15 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC-CCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~-~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
..++|.|+|. |+.|..++.+|.+. +.+.+++.-+...+..... .....+..+. ++ |+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~~R~~~~~~~~~~~~~~~~~~~~D-l~-------d~---------- 74 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK---GFAVKAGVRDVDKAKTSLPQDPSLQIVRAD-VT-------EG---------- 74 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC---CCEEEEEecCHHHHHHhcccCCceEEEEee-CC-------CC----------
Confidence 3578999996 88999999999886 4566655444333322110 0011122221 11 11
Q ss_pred HHHHHHHh-cCCCEEEEEccCCCCCCC--------CcHHHHHHHHHHcCCcEEEE
Q 014098 191 KVAIEEAI-SGADMIFVTAGMGGGTGT--------GAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 191 ~e~I~~~L-~gaD~VfI~AGLGGGTGT--------GaaPvIA~~AKe~giltVaI 236 (430)
.+.+.+.+ .+.|.||.++|.....+. -++..+++.+++.++..|.+
T Consensus 75 ~~~l~~~~~~~~d~vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~ 129 (251)
T PLN00141 75 SDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFIL 129 (251)
T ss_pred HHHHHHHhhcCCCEEEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Confidence 12345556 689999998876432211 02456667777776544443
No 118
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=82.58 E-value=1.5 Score=38.16 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=63.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||+|+|=|..+.+++..+.+. |++++++||+........-.+++-+.++... ++ -..-+.+.|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~---Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~--------~~-----~~yl~~e~I 66 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALREL---GIETVAVNSNPDTVSTHVDMADEAYFEPPGP--------SP-----ESYLNIEAI 66 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHT---TSEEEEEEEGGGTTGHHHHHSSEEEEEESSS--------GG-----GTTTSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHh---CCcceeccCchhcccccccccccceecCcch--------hh-----hhhccHHHH
Confidence 4899999999999999999876 7899999996654322111246677776311 00 011345555
Q ss_pred HHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 195 EEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 195 ~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+..+ ++|.+| +|=+.-.-.|-+++.+.+.|+..+|
T Consensus 67 ~~ia~~~g~~~i~-----pGyg~lse~~~fa~~~~~~gi~fiG 104 (110)
T PF00289_consen 67 IDIARKEGADAIH-----PGYGFLSENAEFAEACEDAGIIFIG 104 (110)
T ss_dssp HHHHHHTTESEEE-----STSSTTTTHHHHHHHHHHTT-EESS
T ss_pred hhHhhhhcCcccc-----cccchhHHHHHHHHHHHHCCCEEEC
Confidence 55553 555554 4434456788898888888886554
No 119
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=82.50 E-value=18 Score=32.62 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=56.5
Q ss_pred CCCeEEEEeeCcchHHHHHHH---H-HcC--CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRM---I-ESS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m---~-~~~--~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+.-+|-++|+|+.+..+-+.- . +.. ..+...++++.|...+.... +|+...
T Consensus 10 ~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------------~d~~~~--- 66 (154)
T TIGR00441 10 AGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVS--------------------NDYGYE--- 66 (154)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhh--------------------ccCCHH---
Confidence 346899999999887644431 1 122 23555555544554332110 011100
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF 241 (430)
......+...++.-|++|++..=|. |.-.--+++.||+.|+.+|+|...|.
T Consensus 67 -~~~~~~~~~~~~~~D~~i~iS~sG~---t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 67 -DVFSRQVEALGQKGDVLLGISTSGN---SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred -HHHHHHHHHhCCCCCEEEEEcCCCC---CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 1112223345577788888865432 34455667888999999999965443
No 120
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.42 E-value=4.6 Score=40.57 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
...+.++.|||.|..|..++..+...+ .+.+++|.+.+.+.... ..| . .+ -.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R~~~~~~~~~-------~~g--------~--~~--------~~ 199 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALG---ARVFVGARSSADLARIT-------EMG--------L--IP--------FP 199 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHH-------HCC--------C--ee--------ec
Confidence 445679999999999999999998764 56777887766543311 001 0 01 12
Q ss_pred HHHHHHHhcCCCEEEEEccC
Q 014098 191 KVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGL 210 (430)
.+++.+.++++|+||.++..
T Consensus 200 ~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred HHHHHHHhccCCEEEECCCh
Confidence 34567788899999998754
No 121
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=82.41 E-value=7.9 Score=40.73 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=47.9
Q ss_pred eEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeCcH----HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 116 KIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNTDA----QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 116 kIkVIGVGGaG~N-iV~~m~~~~~~gve~iaiNTD~----q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
+|.+||+||.|.. ++..|.+. |.++...|.+. ..|... .-++..|. +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~---G~~v~~~D~~~~~~~~~l~~~----gi~~~~g~----------~----------- 52 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR---GYQVSGSDIAENATTKRLEAL----GIPIYIGH----------S----------- 52 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC---CCeEEEECCCcchHHHHHHHC----cCEEeCCC----------C-----------
Confidence 4889999999998 56666554 66776766422 123221 11222221 1
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.++++|+|++..|.-- ..|.+ +.|++.|+++++
T Consensus 53 ----~~~~~~~d~vV~spgi~~-----~~p~~-~~a~~~~i~v~~ 87 (448)
T TIGR01082 53 ----AENLDDADVVVVSAAIKD-----DNPEI-VEAKERGIPVIR 87 (448)
T ss_pred ----HHHCCCCCEEEECCCCCC-----CCHHH-HHHHHcCCceEe
Confidence 123456899988777742 34665 446777776654
No 122
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.91 E-value=3.3 Score=43.28 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=32.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCC------CcceEEEEeCc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSM------TGVEFWIVNTD 149 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~------~gve~iaiNTD 149 (430)
..+.+||.|||-|.-|.-++..+.+++. ..|..|..|.+
T Consensus 8 ~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 3456899999999999999999987752 46888998876
No 123
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=81.63 E-value=3.3 Score=43.74 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=48.7
Q ss_pred CeEEEEeeCcchHH--HHHHHHHc-CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGVGGGGSN--AVNRMIES-SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGVGGaG~N--iV~~m~~~-~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+||.|||.|..|.. ++..|... ...+.+.+.+|.|.+.++.... . + .......+...+- ..-
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~--~--~---~~~~~~~~~~~~I--------~~t 65 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEI--L--A---KKIVEELGAPLKI--------EAT 65 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHH--H--H---HHHHHhcCCCeEE--------EEe
Confidence 58999999987776 33345444 5667788888998876654210 0 0 0000000000000 012
Q ss_pred HHHHHHhcCCCEEEEEccCCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGG 213 (430)
..+.+++++||+||++++.|+-
T Consensus 66 tD~~eal~~AD~Vi~ai~~~~~ 87 (423)
T cd05297 66 TDRREALDGADFVINTIQVGGH 87 (423)
T ss_pred CCHHHHhcCCCEEEEeeEecCc
Confidence 2357889999999999997653
No 124
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=81.61 E-value=7.9 Score=41.66 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=49.4
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCC----c--ceEEEEeCcHHhhh-----cCCC--CCCceEEcCCccCCCCCCC
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMT----G--VEFWIVNTDAQAMK-----VSPV--IPENRLQIGCDLTRGLGAG 177 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~----g--ve~iaiNTD~q~L~-----~s~~--~a~~ki~iG~~~t~GlGaG 177 (430)
.+..||.|||. |..|..++..|...++- + .+++.+|-+.+.+. .... +--..+.+..
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~--------- 168 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI--------- 168 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec---------
Confidence 34689999999 99999999998877432 2 35666665433221 1110 0001122211
Q ss_pred CCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 178 GNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 178 ~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
++ .+.++++|+|+|+||.-=+.|
T Consensus 169 -~~--------------ye~~kdaDiVVitAG~prkpG 191 (444)
T PLN00112 169 -DP--------------YEVFQDAEWALLIGAKPRGPG 191 (444)
T ss_pred -CC--------------HHHhCcCCEEEECCCCCCCCC
Confidence 01 467899999999999865444
No 125
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.50 E-value=3.7 Score=46.14 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
...|+.|||+||-||.++..|...|+.. +..+|-|.-.+.+
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~--ItlVD~D~Ve~SN 377 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRH--ITFVDNGKVSYSN 377 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCe--EEEEcCCEECCCc
Confidence 4689999999999999999999998753 4456766655544
No 126
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=81.22 E-value=21 Score=33.61 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCeEEEEeeCcchHHHHHH---HH---HcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNR---MI---ESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~---m~---~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
.+-+|-++|+|+.+..+... |. +....+...++. +|...+... ++|...+.
T Consensus 43 ~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~--------------------~~d~~~~~-- 99 (192)
T PRK00414 43 AGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCV--------------------SNDFGYDY-- 99 (192)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhh--------------------hccCCHHH--
Confidence 34689999999988763322 21 112235555444 465443211 11111111
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEecc
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlP 240 (430)
-....+...+..-|++|++..=| - |.-..-+++.||+.|+++|+|...+
T Consensus 100 --~~~~~~~~~~~~~Dv~I~iS~SG-~--t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 100 --VFSRYVEAVGREGDVLLGISTSG-N--SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred --HHHHHHHHhCCCCCEEEEEeCCC-C--CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 11222334456678888876543 2 3355566788899999999997554
No 127
>PRK07411 hypothetical protein; Validated
Probab=81.19 E-value=3.4 Score=43.26 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
+......+|.|||+||-|+.++..|...++. ++..+|-|.-.+.+.. ..++.+... .| .| +...|++
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg--~l~lvD~D~ve~sNL~----RQ~l~~~~d---vG---~~-Ka~~a~~ 99 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFDVVDSSNLQ----RQVIHGTSW---VG---KP-KIESAKN 99 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEecccccC----cCcccChHH---CC---Cc-HHHHHHH
Confidence 3445678999999999999999999999774 3556787776665532 223333321 11 11 2222221
Q ss_pred H-----------------hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 189 E-----------------SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 189 e-----------------~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
. ..+...+.++++|+|+-+..= --.--.|.+++.+.+++.|
T Consensus 100 ~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~-----~~~r~~ln~~~~~~~~p~v 157 (390)
T PRK07411 100 RILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDN-----FPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred HHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCC-----HHHHHHHHHHHHHcCCCEE
Confidence 1 112344567889977776431 1123445577888877665
No 128
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=81.17 E-value=12 Score=39.98 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCCCeEEEEee----CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 112 NNEAKIKVIGV----GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 112 ~~~~kIkVIGV----GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
++..+|.|||. |..|..++.+|.+.+.++ ..+.||-....+...+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~~~i~G~~------------------------------ 53 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKAGEILGVK------------------------------ 53 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCCCccCCcc------------------------------
Confidence 34567999999 668999999999887666 5678886543222111
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchh
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEG 245 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG 245 (430)
.+..|.++=...|+++|+.. ...+|-+.+.|.+.|+..+-|++--|...|
T Consensus 54 --~~~sl~~lp~~~Dlavi~vp------~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g 103 (447)
T TIGR02717 54 --AYPSVLEIPDPVDLAVIVVP------AKYVPQVVEECGEKGVKGAVVITAGFKEVG 103 (447)
T ss_pred --ccCCHHHCCCCCCEEEEecC------HHHHHHHHHHHHhcCCCEEEEECCCccccC
Confidence 11222333345788877743 355666667777788887777776676544
No 129
>PRK13936 phosphoheptose isomerase; Provisional
Probab=81.16 E-value=23 Score=33.47 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcC------CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESS------MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~------~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+.-+|-++|.|+.+..+-+.-.+-. -.+...+...+|...+.... .|+....
T Consensus 42 ~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~--------------------~d~~~~~-- 99 (197)
T PRK13936 42 NEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIA--------------------NDYSYNE-- 99 (197)
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHh--------------------hcCCHHH--
Confidence 4568999999988876544332211 12445555545544432210 0110000
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEecc
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlP 240 (430)
-..+.+...++.-|++|++..=|. |--.--+++.||+.|+++|+|...+
T Consensus 100 --~~~~~~a~~~~~~Dv~i~iS~sG~---t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 100 --VFSKQVRALGQPGDVLLAISTSGN---SANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred --HHHHHHHHhCCCCCEEEEEeCCCC---cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 112333445567798888865432 2234445678899999999996543
No 130
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.14 E-value=3.1 Score=43.55 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|...++. ++..+|-|.-.+.+
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sN 81 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFDVVDESN 81 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecCcc
Confidence 34567999999999999999999998774 45667877665544
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.98 E-value=28 Score=35.15 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
....+|.|||.|..|..++..+...+. -+.+++|.+.+...... .+ +| + +. ...
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~r~~~ra~~la----~~--~g--------~--~~--------~~~ 229 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV--AEITIANRTYERAEELA----KE--LG--------G--NA--------VPL 229 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHH----HH--cC--------C--eE--------EeH
Confidence 467899999999999999999876443 44667787755332210 01 11 1 00 012
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHc---CCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhccccc
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM---GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~---giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI~ 268 (430)
+.+.+.+..+|+||.+.+-..- ...+++..+.. +.++|-+ ..|...+-. ..+ .
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~~-----~~~~~~~~~~~~~~~~~viDl-avPrdi~~~---------------v~~---l 285 (311)
T cd05213 230 DELLELLNEADVVISATGAPHY-----AKIVERAMKKRSGKPRLIVDL-AVPRDIEPE---------------VGE---L 285 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCch-----HHHHHHHHhhCCCCCeEEEEe-CCCCCCchh---------------hcc---C
Confidence 3455667889999988653221 23344443332 3333434 478876632 112 4
Q ss_pred CccccccHHHHHHHHh
Q 014098 269 PGLVNVDFADVRAIMK 284 (430)
Q Consensus 269 pglINvDfaDvk~Il~ 284 (430)
||.--+|..|++.+..
T Consensus 286 ~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 286 EGVRLYTIDDLEEVVE 301 (311)
T ss_pred CCcEEEEHHHhHHHHH
Confidence 5655567777777765
No 132
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=80.93 E-value=8.5 Score=40.48 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=25.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+|-+|||||+|.+.+-+++.. .|.+....|.
T Consensus 1 ~~hfigigG~gm~~la~~l~~--~G~~V~~~D~ 31 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQ--LGHEVTGSDA 31 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHh--CCCEEEEECC
Confidence 478999999999998888776 4777777664
No 133
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.86 E-value=10 Score=31.74 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=59.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEE-EEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFW-IVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~i-aiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.+||.|..|..-+..+.+.. ++++.. ++|.|........ .+. |-. .+..
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~~~~~~~~~----~~~--~~~--------------------~~~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPDPERAEAFA----EKY--GIP--------------------VYTD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSSHHHHHHHH----HHT--TSE--------------------EESS
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCCHHHHHHHH----HHh--ccc--------------------chhH
Confidence 48999999999999988887763 456654 4677766544310 000 000 1122
Q ss_pred HHHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCc
Q 014098 194 IEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF 243 (430)
Q Consensus 194 I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~f 243 (430)
+.++++ +.|+|+|+..- ..=..+++.+-+.|+.+ ++-+|+..
T Consensus 54 ~~~ll~~~~~D~V~I~tp~------~~h~~~~~~~l~~g~~v--~~EKP~~~ 97 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPP------SSHAEIAKKALEAGKHV--LVEKPLAL 97 (120)
T ss_dssp HHHHHHHTTESEEEEESSG------GGHHHHHHHHHHTTSEE--EEESSSSS
T ss_pred HHHHHHhhcCCEEEEecCC------cchHHHHHHHHHcCCEE--EEEcCCcC
Confidence 455554 79999998543 45556666666788844 56699964
No 134
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.21 E-value=4.3 Score=41.75 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=27.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
+|.|||.|-.|+.++..|.+.+. .+..+..|-+...
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~~ 37 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAAQ 37 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHHH
Confidence 69999999999999999988764 4445555544443
No 135
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.90 E-value=12 Score=39.02 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
.+.++.|+|.|+.|..++.+|.+.+ .+.++++.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG---AKVILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 4568999999999999999998875 555666654
No 136
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.88 E-value=35 Score=34.07 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhh---hcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM---KVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L---~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
..+|.|.|. |+.|.+++.+|.+.+ .+.+.++++-+.... ..........+..+. + .
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~D-l------------------~ 63 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGD-V------------------R 63 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChhHHHHHHHHhCCCcEEEEEcc-C------------------C
Confidence 467999996 889999999998874 224555565443322 111000011121221 1 2
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCC------------cHHHHHHHHHHcCCcEEEEE
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTG------------AAPVIAGIAKSMGILTVGIA 237 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTG------------aaPvIA~~AKe~giltVaIV 237 (430)
+.+.+.+++++.|.||-+||+....-.. ++-.+.+.|++.++..|-.+
T Consensus 64 d~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~ 123 (324)
T TIGR03589 64 DKERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVAL 123 (324)
T ss_pred CHHHHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3455667778899999999986432111 23345567777776444433
No 137
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.86 E-value=3.4 Score=41.32 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
..+||.|||.|-.|..++.+|.+.+ .+....|.+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANG---HRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 4579999999999999999998875 344555543
No 138
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.85 E-value=4 Score=42.60 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
+......+|.|||+||.|+.++..|...++. ++..+|-|.-.+.+
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sN 80 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSN 80 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEcccc
Confidence 4455667999999999999999999998753 46678887665554
No 139
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.80 E-value=2.2 Score=42.74 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=31.0
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
...++.|||+||.|+-+|+.|.+.++.... .||-|.-.+++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~it--lID~D~v~vTN 69 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRIT--LIDMDDVCVTN 69 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEE--EEecccccccc
Confidence 346899999999999999999999875544 35555444443
No 140
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.55 E-value=16 Score=37.34 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHH-hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQ-AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q-~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.+++|.|.|. |-.|.+++.+|.+. |.++++++-... .+..... ...++.+.- .+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~---G~~V~~v~r~~~~~~~~~~~--~~~~~~~Dl-------------------~d 75 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE---GHYIIASDWKKNEHMSEDMF--CHEFHLVDL-------------------RV 75 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC---CCEEEEEEeccccccccccc--cceEEECCC-------------------CC
Confidence 4579999998 99999999999886 456666653211 1111000 112222211 12
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCC-------------CcHHHHHHHHHHcCCc
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGT-------------GAAPVIAGIAKSMGIL 232 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGT-------------GaaPvIA~~AKe~gil 232 (430)
.+.+..+++++|.||-+|+..++.+. -++-.+++.|++.++.
T Consensus 76 ~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk 130 (370)
T PLN02695 76 MENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK 130 (370)
T ss_pred HHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC
Confidence 34456667789999999987654332 1234567778887753
No 141
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.53 E-value=5.4 Score=40.88 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=30.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
||.|||+||.|+.++..|...|+.. +..+|-|.-.+.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~--ItIvD~D~Ve~sN 38 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGE--IHIIDLDTIDLSN 38 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCe--EEEEcCCCcchhh
Confidence 6899999999999999999988744 4457777665554
No 142
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.13 E-value=10 Score=43.24 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=48.6
Q ss_pred eEEEEeeCcchHHH-HHHHHHcCCCcceEEEEeCcH----HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 116 KIKVIGVGGGGSNA-VNRMIESSMTGVEFWIVNTDA----QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 116 kIkVIGVGGaG~Ni-V~~m~~~~~~gve~iaiNTD~----q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
+|.|||+|+.|-.+ +..|.+ .|++....|.+. +.|... .-++..|. +
T Consensus 6 ~i~viG~G~sG~salA~~L~~---~G~~V~~sD~~~~~~~~~L~~~----gi~~~~g~----------~----------- 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLD---RGYSVSGSDLSEGKTVEKLKAK----GARFFLGH----------Q----------- 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHH---CCCeEEEECCCCChHHHHHHHC----CCEEeCCC----------C-----------
Confidence 59999999999999 555544 367777766532 123221 11232221 1
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.+.++|+|++..|.-- ..|.+ +.|++.|+++++
T Consensus 58 ----~~~~~~~d~vV~SpgI~~-----~~p~~-~~a~~~gi~v~~ 92 (809)
T PRK14573 58 ----EEHVPEDAVVVYSSSISK-----DNVEY-LSAKSRGNRLVH 92 (809)
T ss_pred ----HHHcCCCCEEEECCCcCC-----CCHHH-HHHHHCCCcEEe
Confidence 123467899988776632 24665 446777776665
No 143
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.96 E-value=6.1 Score=41.84 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=62.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCC---ceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPE---NRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~---~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
++|.|||.|+.|.-++..|.+++- .+....+.....+++...... ..+++.- .+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~--------------------~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAELIGGKVEALQVDA--------------------ADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHhhccccceeEEecc--------------------cCh
Confidence 689999999999999999988764 666677766555544321100 1122211 346
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+.+.++|++.|+||-++.- + -...+++.|-+.|+..+=+
T Consensus 60 ~al~~li~~~d~VIn~~p~---~---~~~~i~ka~i~~gv~yvDt 98 (389)
T COG1748 60 DALVALIKDFDLVINAAPP---F---VDLTILKACIKTGVDYVDT 98 (389)
T ss_pred HHHHHHHhcCCEEEEeCCc---h---hhHHHHHHHHHhCCCEEEc
Confidence 7788899999999987532 2 3446778887888765544
No 144
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.89 E-value=4.3 Score=37.63 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
||.|||+||.|+.++..|.+.++. ++..+|-|.-..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg--~i~lvD~D~v~~ 36 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVVEP 36 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEEcC
Confidence 589999999999999999988653 366678776443
No 145
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=78.88 E-value=6.5 Score=41.01 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=31.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
+||.|||.|-.|.-++..|.+. |.+.+.+|.|.+.++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~---G~~V~~~d~~~~~v~~ 38 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL---GHEVTGVDIDQEKVDK 38 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc---CCeEEEEECCHHHHHH
Confidence 4799999999999999999876 4577888888776654
No 146
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.77 E-value=3.4 Score=44.55 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=53.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH-----
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE----- 189 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e----- 189 (430)
+||.|||.|-.|.-.+-.|.+.+ .+++++.+|.|...++... .....+.+ |.+.+-..+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l~---~g~~~~~e-----------~gl~ell~~~~~~~l 66 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAWN---SDQLPIYE-----------PGLDEVVKQCRGKNL 66 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHH---cCCCccCC-----------CCHHHHHHHhhcCCE
Confidence 78999999999999988887764 2678899999998877643 12222221 1111111110
Q ss_pred -hHHHHHHHhcCCCEEEEEccC
Q 014098 190 -SKVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 190 -~~e~I~~~L~gaD~VfI~AGL 210 (430)
-...+.++++++|++||+.+.
T Consensus 67 ~~t~~~~~~i~~advi~I~V~T 88 (473)
T PLN02353 67 FFSTDVEKHVAEADIVFVSVNT 88 (473)
T ss_pred EEEcCHHHHHhcCCEEEEEeCC
Confidence 112346678999999999874
No 147
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.70 E-value=9.8 Score=40.58 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.....++.|+|+|+.|..++..|.+.+ .+....|.+.............++..|. ++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G---~~V~~~D~~~~~~~~~l~~~gi~~~~~~----------~~---------- 68 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELG---CDVVVADDNETARHKLIEVTGVADISTA----------EA---------- 68 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCC---CEEEEECCChHHHHHHHHhcCcEEEeCC----------Cc----------
Confidence 344568999999999998888887765 4666667543322110000011222221 11
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.+.++|+|++..|.- --.|.+ +.|++.|+.+++
T Consensus 69 ----~~~~~~~d~vV~Spgi~-----~~~p~~-~~a~~~gi~v~~ 103 (473)
T PRK00141 69 ----SDQLDSFSLVVTSPGWR-----PDSPLL-VDAQSQGLEVIG 103 (473)
T ss_pred ----hhHhcCCCEEEeCCCCC-----CCCHHH-HHHHHCCCceee
Confidence 11346789998877764 234665 456788887776
No 148
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.70 E-value=6.1 Score=36.80 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCCCCeEEEEeeCcc-hHHHHHHHHHcCCCcceEEEEe
Q 014098 111 NNNEAKIKVIGVGGG-GSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 111 ~~~~~kIkVIGVGGa-G~NiV~~m~~~~~~gve~iaiN 147 (430)
...+.+|.|||.|.. |.-++.+|.+.+ +..+.+|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEE
Confidence 466789999999984 777898988764 4555555
No 149
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.49 E-value=8.9 Score=37.86 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=53.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceE-EEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEF-WIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~-iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.|||+|..|..++..+.+... +++. .++|.+.+...... + .. |. + ..+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~~elv~v~d~~~~~a~~~a---~---~~--------~~---~---------~~~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-NAELYAFYDRNLEKAENLA---S---KT--------GA---K---------ACLS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-CeEEEEEECCCHHHHHHHH---H---hc--------CC---e---------eECC
Confidence 689999999999999998876532 5663 45677766543210 0 00 10 0 0122
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+.+.+.++|+|++++. ..+...++..+-+.|..++.+
T Consensus 55 ~~ell~~~DvVvi~a~------~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 55 IDELVEDVDLVVECAS------VNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred HHHHhcCCCEEEEcCC------hHHHHHHHHHHHHcCCCEEEE
Confidence 3444578999999963 233344444444567766543
No 150
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.39 E-value=13 Score=39.23 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=25.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+|.|+|+|..|..+++.|.+.+ .+....|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G---~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG---AKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC---CEEEEECC
Confidence 458999999999998888887764 56666664
No 151
>PLN00016 RNA-binding protein; Provisional
Probab=78.29 E-value=83 Score=32.08 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.0
Q ss_pred CCCCeEEEE----ee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 112 NNEAKIKVI----GV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 112 ~~~~kIkVI----GV-GGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
....+|.|+ |. |..|.+++.+|++.+ .+.+++.-+.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEecCC
Confidence 344689999 64 889999999999874 5666665543
No 152
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.19 E-value=9.5 Score=37.75 Aligned_cols=37 Identities=27% Similarity=0.634 Sum_probs=32.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
.+|.|||.|-.|..++..+... |.+.+.+|.+.+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~~~d~~~~~~~ 41 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVWLLDSDPAALS 41 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEEEEeCCHHHHH
Confidence 4799999999999999999877 478888998887765
No 153
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=78.07 E-value=4 Score=43.39 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=51.1
Q ss_pred CeEEEEeeCcc-hHHHHHHHHHcC--CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH--
Q 014098 115 AKIKVIGVGGG-GSNAVNRMIESS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE-- 189 (430)
Q Consensus 115 ~kIkVIGVGGa-G~NiV~~m~~~~--~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e-- 189 (430)
+||.|||-|+. .-.++..|++.. +.+-+++.+|.|...|+... .++++.+++
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~-----------------------~l~~~~~~~~g 57 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL-----------------------TIAKRYVEEVG 57 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH-----------------------HHHHHHHHhhC
Confidence 58999997774 235777777654 67789999999998876521 111221111
Q ss_pred ------hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 ------SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ------~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.-.+.+++|+|||.||...=.||
T Consensus 58 ~~~~v~~ttD~~~Al~gADfVi~~irvGg 86 (425)
T cd05197 58 ADIKFEKTMDLEDAIIDADFVINQFRVGG 86 (425)
T ss_pred CCeEEEEeCCHHHHhCCCCEEEEeeecCC
Confidence 12235889999999999887775
No 154
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.06 E-value=4.7 Score=39.06 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=30.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
++|.|||.|..|..++..|.+.+....+.+.++-+.+.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~ 42 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA 42 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH
Confidence 6899999999999999999887643345667777665544
No 155
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.02 E-value=2.9 Score=38.19 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=64.9
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEc--CCccCCCCCCCCCchHHHHHHH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQI--GCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~i--G~~~t~GlGaG~dP~vG~~aA~ 188 (430)
.....++.|+|.|-+|..++.-+... |++...++.....++...-.....+.+ +..... ...|.+.-.+.-+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLER---KDFDKADYYEHPE 90 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS---B-CCHHHCHHHCC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccCCHHHHHhhhcccCceEEEcccccccc---cccchhhhhHHHH
Confidence 34568999999999999999998776 678888888766554321111233333 222111 1144544444455
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHH--HHHHHcC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMG 230 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA--~~AKe~g 230 (430)
.....+.+.+..+|+|++++=.-|. -+|.+. +.+++|.
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~----~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGK----RAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTS----S---SBEHHHHHTSS
T ss_pred HhHHHHHHHHhhCcEEeeecccCCC----CCCEEEEhHHhhccC
Confidence 6667788999999998876655333 367665 5667765
No 156
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.95 E-value=6.7 Score=40.77 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
...++.|||.|.+|..++..+...+ ++.+++|.+...++.....-...+... ..+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~~~g~~v~~~--------------------~~~~~ 222 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG---ATVTILDINIDRLRQLDAEFGGRIHTR--------------------YSNAY 222 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcCceeEec--------------------cCCHH
Confidence 5678999999999999999998775 467778887665543110000011110 01234
Q ss_pred HHHHHhcCCCEEEEEccC
Q 014098 193 AIEEAISGADMIFVTAGM 210 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGL 210 (430)
.+.+.+.++|+||-+++.
T Consensus 223 ~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 223 EIEDAVKRADLLIGAVLI 240 (370)
T ss_pred HHHHHHccCCEEEEcccc
Confidence 567778899999987766
No 157
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.85 E-value=9.2 Score=40.75 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=59.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh----
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES---- 190 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~---- 190 (430)
|||.|||.|=.|.-..--|.+. |.+.+++|-|....+... +.+..|= +|.+-.-..+..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~---GHeVv~vDid~~KV~~ln---~g~~PI~-----------EpgLe~ll~~~~~~gR 63 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL---GHEVVCVDIDESKVELLN---KGISPIY-----------EPGLEELLKENLASGR 63 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHh---CCCCCCc-----------CccHHHHHHhccccCc
Confidence 6899999999999877777665 578888999887665432 2222221 222222111111
Q ss_pred ---HHHHHHHhcCCCEEEEEccCCCC-CCCCcHHHHHHHHHH
Q 014098 191 ---KVAIEEAISGADMIFVTAGMGGG-TGTGAAPVIAGIAKS 228 (430)
Q Consensus 191 ---~e~I~~~L~gaD~VfI~AGLGGG-TGTGaaPvIA~~AKe 228 (430)
-...+++++++|++||+.|.-=. +|+-=.-.+-..|++
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~ 105 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKD 105 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHH
Confidence 12356788999999999987655 343333333333433
No 158
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=77.81 E-value=15 Score=37.56 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=46.9
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~g----ve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
||.|||. |..|..++..|...++-+ .+++.+|.+... .+.. -..+-+..- .. |.... . ..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~-~~a~---g~~~Dl~d~----~~----~~~~~-~--~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM-KVLE---GVVMELMDC----AF----PLLDG-V--VP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc-cccc---eeEeehhcc----cc----hhcCc-e--ec
Confidence 6899999 999999999998877632 356666653221 0000 011111110 00 00000 0 00
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.....+.++++|+|+++||..-..|
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~ 90 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEG 90 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCC
Confidence 0123578899999999999865444
No 159
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=77.59 E-value=3.4 Score=39.30 Aligned_cols=73 Identities=21% Similarity=0.420 Sum_probs=44.2
Q ss_pred eEEEEeeCcchHH--HHHHHHH-cCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh--
Q 014098 116 KIKVIGVGGGGSN--AVNRMIE-SSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES-- 190 (430)
Q Consensus 116 kIkVIGVGGaG~N--iV~~m~~-~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~-- 190 (430)
||.+||-|..--- ++.-|.. ..+.+-++..+|.|.+.|+... .++++.+++.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~-----------------------~~~~~~~~~~~~ 57 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVE-----------------------RLARRMVEEAGA 57 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHH-----------------------HHHHHHHHHCTT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHH-----------------------HHHHHHHHhcCC
Confidence 7899998876543 3333333 2466778999999999887531 1122222221
Q ss_pred ------HHHHHHHhcCCCEEEEEccCC
Q 014098 191 ------KVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 191 ------~e~I~~~L~gaD~VfI~AGLG 211 (430)
-.+.+++|+|||.||...-.|
T Consensus 58 ~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 58 DLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp SSEEEEESSHHHHHTTESEEEE---TT
T ss_pred CeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 223588999999999998886
No 160
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.48 E-value=5.4 Score=39.60 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=32.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCC-CcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~-~gve~iaiNTD~q~L~~ 155 (430)
+||.+||+|-.|..++..|++.+. ...++++.|-+.+.++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~ 44 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN 44 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH
Confidence 489999999999999999998874 44567788876666543
No 161
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.47 E-value=4.4 Score=36.76 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=29.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
++|.+||+|-.|.+++.+|.+. +.+.++.|-+.+.++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d~~~~~~~~ 39 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYDRSPEKAEA 39 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT---TTEEEEEESSHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc---CCeEEeeccchhhhhh
Confidence 6899999999999999999887 5677888877665543
No 162
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=77.38 E-value=11 Score=44.63 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.....+|.|||+||.|+.++..|...|+.. +..+|.|.-.+..
T Consensus 21 kL~~s~VLIiG~gGLG~EiaKnL~laGVg~--iti~D~d~v~~sd 63 (1008)
T TIGR01408 21 KMAKSNVLISGMGGLGLEIAKNLVLAGVKS--VTLHDTEKCQAWD 63 (1008)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCCe--EEEEeCCeecHhh
Confidence 345678999999999999999999987654 3456766554443
No 163
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.17 E-value=9.6 Score=41.65 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
....++.|+|.|.+|..++..+...+ .+.+++|.+...++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~ 203 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQ 203 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHH
Confidence 45789999999999999998887664 568899998877664
No 164
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.14 E-value=13 Score=38.61 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCC-CCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI-PENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~-a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
...+|.|+|.|..|-.+++.|.+. +.++++++.|.+.+....-. ....+..|.. .++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~--------~~~----------- 287 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERDPERAEELAEELPNTLVLHGDG--------TDQ----------- 287 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHCCCCeEEECCC--------CCH-----------
Confidence 467899999999999999999775 67899999998865432100 0122333321 122
Q ss_pred HHH-HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCc-EEEEE
Q 014098 192 VAI-EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL-TVGIA 237 (430)
Q Consensus 192 e~I-~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gil-tVaIV 237 (430)
+.+ +..++.+|+|+++..= ....-.++.+||+++.. +++.+
T Consensus 288 ~~L~~~~~~~a~~vi~~~~~-----~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 288 ELLEEEGIDEADAFIALTND-----DEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHHHhcCCccCCEEEECCCC-----cHHHHHHHHHHHHhCCCeEEEEE
Confidence 222 2345789988776542 23455566778888765 34443
No 165
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=76.96 E-value=13 Score=37.52 Aligned_cols=97 Identities=21% Similarity=0.378 Sum_probs=54.2
Q ss_pred EEeeCcchHHHHHHHHHcCCCcceEEEEeCcH-----HhhhcCCC--CC--CceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA-----QAMKVSPV--IP--ENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 119 VIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~-----q~L~~s~~--~a--~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
|||.|..|..++..|...++-+ ++..+|.+. ++++.... .. ..++.-+ +
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~-el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-----------~---------- 58 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIAD-EIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSG-----------D---------- 58 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCC-EEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecC-----------C----------
Confidence 6899999999999988776633 455555422 22222211 00 1122211 1
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCC-------cHHHHHHHHHH---cCCc-EEEEEeccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTG-------AAPVIAGIAKS---MGIL-TVGIATVPFC 242 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTG-------aaPvIA~~AKe---~gil-tVaIVTlPF~ 242 (430)
.+.++++|+|+|+||.-=..|.- -++++.++++. .+-. .|-++|-|-.
T Consensus 59 -----~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d 117 (299)
T TIGR01771 59 -----YSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD 117 (299)
T ss_pred -----HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 36789999999999985443321 24455544433 2322 2445665643
No 166
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.76 E-value=18 Score=38.64 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+|.|+|+|+.|..++..|.+.+ .+....|.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G---~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG---ARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC---CEEEEEcC
Confidence 458999999999999888877764 55566664
No 167
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=76.71 E-value=7.6 Score=41.20 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.....++.|||.|++|.-++.+|...+. -+++.+|-+........ .++ +. + . -..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~--~~I~V~nRt~~ra~~La----~~~--~~-------~--~--------~~~ 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP--KQIMLANRTIEKAQKIT----SAF--RN-------A--S--------AHY 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHH----HHh--cC-------C--e--------Eec
Confidence 3556799999999999999999987654 35777886544322210 000 10 0 0 012
Q ss_pred HHHHHHHhcCCCEEEEEccC
Q 014098 191 KVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGL 210 (430)
.+++.+.+..+|+||-+.+-
T Consensus 233 ~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 233 LSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred HHHHHHHhccCCEEEECcCC
Confidence 45668889999999987543
No 168
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.91 E-value=7.1 Score=38.44 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcC-CCcceEEEEeC
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESS-MTGVEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~-~~gve~iaiNT 148 (430)
+.+||.+||.|-.|..++..|.+.+ ....++++.|-
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 4579999999999999999999886 33355666664
No 169
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.73 E-value=14 Score=38.85 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
.+|.|||+|+.|-.++..|.+.+- +++....|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~-~~~v~~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQP-QLTVKVIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCC-CCeEEEEeC
Confidence 579999999999999999987731 255555554
No 170
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=75.12 E-value=11 Score=40.57 Aligned_cols=90 Identities=20% Similarity=0.390 Sum_probs=60.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC----CCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV----IPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~----~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
...||.|+|.|.-|..++..|.+. |+++.+.|++... ..... .....+..|.. +
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~----------~-------- 63 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSH----------D-------- 63 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCc-cchhhhhhhccCceeecCcc----------c--------
Confidence 478999999999999999999887 5888888876554 11100 01122223221 0
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
.+.+.++|+|++.=|+ ....| +.+.|+..|+.+++=
T Consensus 64 ------~~~~~~~d~vV~SPGi-----~~~~p-~v~~A~~~gi~i~~d 99 (448)
T COG0771 64 ------DEDLAEFDLVVKSPGI-----PPTHP-LVEAAKAAGIEIIGD 99 (448)
T ss_pred ------hhccccCCEEEECCCC-----CCCCH-HHHHHHHcCCcEEeH
Confidence 1556789999998888 34456 446777888887763
No 171
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=75.10 E-value=10 Score=40.45 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=64.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||+|+|-|..+..++..+.+. |++++++++|........-.++..+.+|.. |. ...-+.+.|
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~---Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~----------~~----~~y~d~~~i 65 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEM---GIRSVAIYSEADRHALHVKRADEAYSIGAD----------PL----AGYLNPRRL 65 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCCCccCCccHhhCCEEEEcCCC----------ch----hhhcCHHHH
Confidence 4899999999999999999876 678889988866533221124667777642 10 111235566
Q ss_pred HHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 195 ~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.. .++|.|+-..|. ..-.+.+++.+.++|+..++
T Consensus 66 ~~~a~~~~~D~I~pg~g~-----lse~~~~a~~~e~~Gi~~ig 103 (472)
T PRK07178 66 VNLAVETGCDALHPGYGF-----LSENAELAEICAERGIKFIG 103 (472)
T ss_pred HHHHHHHCCCEEEeCCCC-----cccCHHHHHHHHHcCCCccC
Confidence 6666 488988774321 12235678888888866543
No 172
>PRK14851 hypothetical protein; Provisional
Probab=74.86 E-value=7 Score=44.14 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH-
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN- 188 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~- 188 (430)
....+.+|.|||+||.|+.++..|...++. ++..+|-|.-.+.+.. ..+...... .|- ..-++.++...
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG--~l~LvD~D~ve~sNLN----RQ~~~~~~d---vG~-~Kv~v~~~~l~~ 108 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIG--RFHIADFDQFEPVNVN----RQFGARVPS---FGR-PKLAVMKEQALS 108 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCC--eEEEEcCCEecccccc----cCcCcChhh---CCC-HHHHHHHHHHHH
Confidence 345578999999999999999999999873 5667787766655432 112111110 110 00111111111
Q ss_pred -------------HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 189 -------------ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 189 -------------e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
-..+.+.+.++++|+|+ -++.--+ .-+--.|.+.|++.+++.|..
T Consensus 109 inP~~~I~~~~~~i~~~n~~~~l~~~DvVi--d~~D~~~-~~~r~~l~~~c~~~~iP~i~~ 166 (679)
T PRK14851 109 INPFLEITPFPAGINADNMDAFLDGVDVVL--DGLDFFQ-FEIRRTLFNMAREKGIPVITA 166 (679)
T ss_pred hCCCCeEEEEecCCChHHHHHHHhCCCEEE--ECCCCCc-HHHHHHHHHHHHHCCCCEEEe
Confidence 01234566778999866 3331111 011235778899999888754
No 173
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=74.83 E-value=7 Score=40.16 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=30.4
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
||.|||+||-|+.++..|...++. ++..+|-|.-.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~Ve~sN 38 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSYSN 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccc
Confidence 689999999999999999998775 35567777655544
No 174
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=74.81 E-value=15 Score=37.89 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+||.|+|.|..|-++++.+.++ +++++++++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcC--CCcEEEEEEC
Confidence 6899999999999999887664 6889888774
No 175
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.77 E-value=7.3 Score=38.46 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=31.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|-.|..++..+.+. |.+.+.+|.|.+.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLES 39 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHH
Confidence 3799999999999999999876 4677888888887765
No 176
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=74.66 E-value=39 Score=34.22 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=26.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+||.|||.|-.|.-++-.+...+.- +.+.+|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~--~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA--DLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC--eEEEEeC
Confidence 5899999999999999998887652 5666665
No 177
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.36 E-value=7.3 Score=38.82 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|..|..++..+.+.+. ..+.+++|.+.+.+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~ 46 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRAR 46 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHH
Confidence 589999999999999999987753 2467778887766543
No 178
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=74.05 E-value=22 Score=35.50 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=46.3
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
++|.|.|. |-.|+.++.+|++.+ +.+.++++-+...+....-...-.+..+. ++ ++.+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r~~~~~~~~~~~~~~~~~~~D-l~-----------------~~~~~ 61 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDMQTDRLGDLVNHPRMHFFEGD-IT-----------------INKEW 61 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeCcHHHHHHhccCCCeEEEeCC-CC-----------------CCHHH
Confidence 58999997 999999999998752 46667776433322211100011222221 10 12334
Q ss_pred HHHHhcCCCEEEEEccCCC
Q 014098 194 IEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGG 212 (430)
+.++++++|.||=+|++.-
T Consensus 62 ~~~~~~~~d~ViH~aa~~~ 80 (347)
T PRK11908 62 IEYHVKKCDVILPLVAIAT 80 (347)
T ss_pred HHHHHcCCCEEEECcccCC
Confidence 5567788999998888743
No 179
>TIGR03483 FtsZ_alphas_C cell division protein FtsZ, alphaProteobacterial C-terminal extension. This model describes a domain found as a C-terminal extension to the cell division protein FtsZ in many but not all members of the alphaProteobacteria.
Probab=73.94 E-value=1.4 Score=39.38 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=14.0
Q ss_pred CCCCCCcccchhhccCC
Q 014098 407 NSGSGSVEIPEFLRQRP 423 (430)
Q Consensus 407 ~~~~~~~~ip~~lr~~~ 423 (430)
..+++.||||+||||+.
T Consensus 104 ~~edd~leIPAFLRRQa 120 (121)
T TIGR03483 104 MQEDDQLEIPAFLRRQA 120 (121)
T ss_pred CCccccchhhHHHHhcc
Confidence 34567899999999985
No 180
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.74 E-value=5.8 Score=39.17 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=29.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
+||.|||.|..|+.++..|.+.+ .+...++.+...++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~r~~~~~~ 38 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWARDPEQAA 38 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEECCHHHHH
Confidence 58999999999999999998764 45566677655544
No 181
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=73.70 E-value=69 Score=37.99 Aligned_cols=97 Identities=24% Similarity=0.365 Sum_probs=55.8
Q ss_pred CCCeEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch
Q 014098 113 NEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS 181 (430)
Q Consensus 113 ~~~kIkVIGVGGa-----------G~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~ 181 (430)
+-.||+|+|.|.. |..++..|.+. |++.+++|.+..........++..+.... +
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~---G~~vi~v~~~p~~~~~~~~~aD~~y~~p~----------~-- 70 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREE---GYRVVLVNSNPATIMTDPEMADATYIEPI----------T-- 70 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHc---CCEEEEEcCCcccccCCcccCCEEEECCC----------C--
Confidence 3568999999973 56788888765 78999999887543221111233333221 1
Q ss_pred HHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCCCCCCcHHHHHH--HHHHcCCcEEE
Q 014098 182 VGMNAANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAG--IAKSMGILTVG 235 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~--~AKe~giltVa 235 (430)
.+.|.+.++ +.|. |+.++||.||--.+-.+.+ ++.++|+.+++
T Consensus 71 ---------~e~l~~ii~~e~~D~--Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g 117 (1066)
T PRK05294 71 ---------PEFVEKIIEKERPDA--ILPTMGGQTALNLAVELAESGVLEKYGVELIG 117 (1066)
T ss_pred ---------HHHHHHHHHHHCcCE--EEECCCCchhhhhhHHHHhhCHHHHCCCEEEC
Confidence 233444442 5664 4566777776544443332 45667766554
No 182
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=73.68 E-value=4.5 Score=39.84 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=29.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
++|.|||.|..|..++.++.+. +.+.++.|.+...+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~---g~~v~~~d~~~~~~~ 39 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA---GYSLVVYDRNPEAVA 39 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC---CCeEEEEcCCHHHHH
Confidence 5899999999999999999876 456677787766543
No 183
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=73.61 E-value=24 Score=35.73 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=28.4
Q ss_pred hcCCCEEEEEccCCCCCCCCcHHHHH---HHHHHcCCcEEEEEeccCC
Q 014098 198 ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 198 L~gaD~VfI~AGLGGGTGTGaaPvIA---~~AKe~giltVaIVTlPF~ 242 (430)
+..-|+||++ +.+|-+|.+. +.||+.|++||+|...|-+
T Consensus 129 l~~~DvvI~I------S~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 129 LTAKDVVVGI------AASGRTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCCEEEEE------eCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5677888877 3455567666 4678899999999866554
No 184
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=73.59 E-value=9.5 Score=40.94 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=32.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC---CcceEEEEeCcHHhhhcC
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSM---TGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~---~gve~iaiNTD~q~L~~s 156 (430)
||.|||+||.||-++..|...|+ .+-++..+|-|.-.+.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL 44 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL 44 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc
Confidence 58999999999999999999876 223667788877665543
No 185
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=73.38 E-value=22 Score=35.11 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=24.2
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
|||.|+| -|..|..++.++.+ .+.++++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~---~~~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE---RGYEVIATS 31 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT---TSEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHhh---CCCEEEEeC
Confidence 6999999 58899999988855 467787774
No 186
>PLN02206 UDP-glucuronate decarboxylase
Probab=73.30 E-value=1.3e+02 Score=31.95 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
....+||.|.|. |-.|.+++.+|++. |.+.++++.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~---G~~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMAR---GDSVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHC---cCEEEEEeC
Confidence 345689999996 99999999999987 456666653
No 187
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=73.29 E-value=20 Score=42.51 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=57.8
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcce-------------EEEEeCcHHhhhcCCCCCC--ceEEcCCccCCCCCCCC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVE-------------FWIVNTDAQAMKVSPVIPE--NRLQIGCDLTRGLGAGG 178 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve-------------~iaiNTD~q~L~~s~~~a~--~ki~iG~~~t~GlGaG~ 178 (430)
..+|.|||.|..|..+++.|.+. .+++ ..+++.+.+.........+ .-+++.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD----------- 635 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD----------- 635 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee-----------
Confidence 56899999999999999999765 3333 4445554443322100000 001111
Q ss_pred CchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 179 NPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 179 dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
-.+.+++.+.++++|+|+++..- ..-+.+|+.|-+.|+.++
T Consensus 636 ---------v~D~e~L~~~v~~~DaVIsalP~------~~H~~VAkaAieaGkHvv 676 (1042)
T PLN02819 636 ---------VSDSESLLKYVSQVDVVISLLPA------SCHAVVAKACIELKKHLV 676 (1042)
T ss_pred ---------cCCHHHHHHhhcCCCEEEECCCc------hhhHHHHHHHHHcCCCEE
Confidence 02456777888899999987643 345777888888887654
No 188
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=73.27 E-value=6.9 Score=40.04 Aligned_cols=97 Identities=20% Similarity=0.341 Sum_probs=59.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHH--hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQ--AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~ia-iNTD~q--~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
.++||.|||.|..|...+..+.+ .++++..+ ++.|.+ .+... .+ .|-.. ..+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~--~~~velvAVvdid~es~gla~A-----~~--~Gi~~----------------~~~ 57 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR--SEHLEPGAMVGIDPESDGLARA-----RR--LGVAT----------------SAE 57 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc--CCCcEEEEEEeCChhhHHHHHH-----HH--cCCCc----------------ccC
Confidence 46899999999999997777765 35677543 555543 22221 11 11110 012
Q ss_pred hHHHHHHH--hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 190 SKVAIEEA--ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 190 ~~e~I~~~--L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
+.+.+.+. +.+.|+||+++ +.......+..+.+.|..+|-- .|..
T Consensus 58 ~ie~LL~~~~~~dIDiVf~AT------~a~~H~e~a~~a~eaGk~VID~--sPA~ 104 (302)
T PRK08300 58 GIDGLLAMPEFDDIDIVFDAT------SAGAHVRHAAKLREAGIRAIDL--TPAA 104 (302)
T ss_pred CHHHHHhCcCCCCCCEEEECC------CHHHHHHHHHHHHHcCCeEEEC--Cccc
Confidence 33444332 36799999986 4567777788888889876654 4554
No 189
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=73.27 E-value=24 Score=31.30 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=24.0
Q ss_pred HHHHH--hcCCCEEEEEccCCCCCCCCcHHHHH---HHHHHcCCcEEEEE
Q 014098 193 AIEEA--ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIA 237 (430)
Q Consensus 193 ~I~~~--L~gaD~VfI~AGLGGGTGTGaaPvIA---~~AKe~giltVaIV 237 (430)
.+.+. ++.-|++|+++. +|-.|.+. +.||++|..||+|.
T Consensus 94 ~~~~~~~~~~gDvli~iS~------SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 94 QLLALYDIRPGDVLIVISN------SGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHTT--TT-EEEEEES------SS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHcCCCCCCEEEEECC------CCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34445 678899998864 33445554 56789999999985
No 190
>PRK04148 hypothetical protein; Provisional
Probab=72.99 E-value=7.9 Score=35.17 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=61.8
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+.+|.+||+| .|.+++..|.+. |.+.+++|.|..+.+...- .-.....+.- + +|+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~-~~~~~v~dDl-f-------~p~------------ 71 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIVIDINEKAVEKAKK-LGLNAFVDDL-F-------NPN------------ 71 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEEEECCHHHHHHHHH-hCCeEEECcC-C-------CCC------------
Confidence 4689999999 898888888765 6899999999887654321 0112333321 1 222
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchh
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEG 245 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG 245 (430)
.+.-+++|+|.=+= -.--.-|-|.++||+.++..+- +|++.|-
T Consensus 72 -~~~y~~a~liysir-----pp~el~~~~~~la~~~~~~~~i---~~l~~e~ 114 (134)
T PRK04148 72 -LEIYKNAKLIYSIR-----PPRDLQPFILELAKKINVPLII---KPLSGEE 114 (134)
T ss_pred -HHHHhcCCEEEEeC-----CCHHHHHHHHHHHHHcCCCEEE---EcCCCCC
Confidence 12345667665431 1334577888888888877442 4777664
No 191
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.97 E-value=20 Score=37.90 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
...++.|||.|+.|..++..|.+.+ .+...++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~ 47 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG---ARVTVVDD 47 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4558999999999999998887764 55666663
No 192
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=72.78 E-value=25 Score=30.54 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=51.5
Q ss_pred eEEEEe----eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCC-CCCCchH-----HHH
Q 014098 116 KIKVIG----VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLG-AGGNPSV-----GMN 185 (430)
Q Consensus 116 kIkVIG----VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlG-aG~dP~v-----G~~ 185 (430)
+|.||| -+..|..++.+|.+ .|.+.+.+|-..+.+...++. ..+. ...++++ ..+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~---~G~~v~~Vnp~~~~i~G~~~y------------~sl~e~p~~iDlavv~~~~~ 66 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA---AGYEVYPVNPKGGEILGIKCY------------PSLAEIPEPIDLAVVCVPPD 66 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH---TT-EEEEESTTCSEETTEE-B------------SSGGGCSST-SEEEE-S-HH
T ss_pred EEEEEcccCCCCChHHHHHHHHHh---CCCEEEEECCCceEECcEEee------------ccccCCCCCCCEEEEEcCHH
Confidence 688999 56779999999988 467899999765443221110 0000 0011111 111
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
...+-.+++.+ .++..+++..| ...+.+.+.|++.|+.+++
T Consensus 67 ~~~~~v~~~~~--~g~~~v~~~~g-------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 67 KVPEIVDEAAA--LGVKAVWLQPG-------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHH--HT-SEEEE-TT-------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEEcc-------hHHHHHHHHHHHcCCEEEe
Confidence 22222222222 27888888877 5678888888888887664
No 193
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=72.20 E-value=1.5e+02 Score=35.46 Aligned_cols=97 Identities=24% Similarity=0.371 Sum_probs=55.4
Q ss_pred CCCeEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch
Q 014098 113 NEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS 181 (430)
Q Consensus 113 ~~~kIkVIGVGGa-----------G~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~ 181 (430)
+-.||+|||.|.. |.-++..|.+. |++.+.+|.+.......+..++ ++.+- |.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~---G~~vi~v~~np~~~~~d~~~ad-~~y~e------------p~ 69 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE---GYQVVLVNPNPATIMTDPAPAD-TVYFE------------PL 69 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc---CCEEEEEeCCcchhhcCcccCC-eeEEC------------CC
Confidence 3568999999985 67788888775 6789999988754332211122 22222 11
Q ss_pred HHHHHHHHhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHH--HHHHcCCcEEE
Q 014098 182 VGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAG--IAKSMGILTVG 235 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~--~AKe~giltVa 235 (430)
..+.+.+.+ ++.|.|+. .+||-||--.+-.+++ +++++|+.+++
T Consensus 70 --------~~e~l~~ii~~e~~D~Iip--~~gg~~~l~~a~~l~~~g~Le~~gv~l~g 117 (1068)
T PRK12815 70 --------TVEFVKRIIAREKPDALLA--TLGGQTALNLAVKLHEDGILEQYGVELLG 117 (1068)
T ss_pred --------CHHHHHHHHHHhCcCEEEE--CCCCchHHHHHHHHHhcCHHHHCCCEEEC
Confidence 123333333 36777655 5777775433322222 44667776555
No 194
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=72.19 E-value=5.9 Score=38.78 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCC-cceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMT-GVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~-gve~iaiNTD 149 (430)
+.+||.+||+|-.|+.++..|.+.+.. .-+.++.+-+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCC
Confidence 457999999999999999999987632 2234555443
No 195
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=72.18 E-value=46 Score=32.23 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=44.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
++|.|.|. |..|..++.+|.+.+ .+.++++.+...+.... ...-.+..+. . .+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~-~~~~~~~~~D-----------~--------~~~~~ 57 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVRPTSDRRNLE-GLDVEIVEGD-----------L--------RDPAS 57 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEecCccccccc-cCCceEEEee-----------C--------CCHHH
Confidence 47899986 889999999999874 56666665433221110 0011121221 1 23456
Q ss_pred HHHHhcCCCEEEEEccC
Q 014098 194 IEEAISGADMIFVTAGM 210 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGL 210 (430)
+.++++++|.||-+|+.
T Consensus 58 l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 58 LRKAVAGCRALFHVAAD 74 (328)
T ss_pred HHHHHhCCCEEEEecee
Confidence 77788899999998864
No 196
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=72.12 E-value=5.3 Score=39.41 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
||.|||.|-.|..++.++.+.+ .+.+.+|.+.+.+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTIGPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcCCHHHHHH
Confidence 5899999999999999998864 567777877665543
No 197
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=72.08 E-value=6.4 Score=33.94 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=53.3
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH----hhhcCCC--CCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 116 KIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ----AMKVSPV--IPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 116 kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q----~L~~s~~--~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
||.||| -|-.|.-+++.|.++ +.++.+.+=...+ .+....- .....+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------------- 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--------------------- 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE---------------------
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccccceeEe---------------------
Confidence 789999 888888888888774 5666544332222 1211100 000011110
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+ .-.+.+.++|+||.+ |+++++.-++..+.+.|+.+|-.
T Consensus 58 -~--~~~~~~~~~Dvvf~a------~~~~~~~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 58 -D--ADPEELSDVDVVFLA------LPHGASKELAPKLLKAGIKVIDL 96 (121)
T ss_dssp -E--TSGHHHTTESEEEE-------SCHHHHHHHHHHHHHTTSEEEES
T ss_pred -e--cchhHhhcCCEEEec------CchhHHHHHHHHHhhCCcEEEeC
Confidence 0 112345899999998 56788899998888899976654
No 198
>PRK08462 biotin carboxylase; Validated
Probab=72.07 E-value=12 Score=39.34 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh--hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA--MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~--L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..||+|+|-|..+..++..+.+. |++.+++.++... +... .+++.+.+|.... ++ ...+.
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~---G~~~v~~~~~~d~~~~~~~--~ad~~~~~~~~~~-------~~------~y~~~ 65 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM---GKEAIAIYSTADKDALYLK--YADAKICIGGAKS-------SE------SYLNI 65 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc---CCCEEEEechhhcCCchhh--hCCEEEEeCCCch-------hc------ccCCH
Confidence 35899999999999999998776 6778888775443 2222 2577887864211 00 11223
Q ss_pred HHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 192 VAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 192 e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
+.|.++. .++|.|+-..|. .+..+.++++++++|+.+++
T Consensus 66 ~~l~~~~~~~~~D~i~pg~g~-----lse~~~~a~~~e~~Gi~~~g 106 (445)
T PRK08462 66 PAIISAAEIFEADAIFPGYGF-----LSENQNFVEICSHHNIKFIG 106 (445)
T ss_pred HHHHHHHHHcCCCEEEECCCc-----cccCHHHHHHHHHCCCeEEC
Confidence 4555544 378888876542 23347788889999977654
No 199
>PRK08818 prephenate dehydrogenase; Provisional
Probab=71.69 E-value=6.4 Score=41.23 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
.++|.|||+ |..|+.++..|.+. .+++.+.+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 468999999 99999999999765 2667777665
No 200
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.37 E-value=9.5 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=29.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
.+||.|||.|..|.-++.+|.+.+ .+...+|.+.+..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r~~~~~ 40 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG---VPVRLWARRPEFA 40 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC---CeEEEEeCCHHHH
Confidence 468999999999999999998874 5566677765543
No 201
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.91 E-value=10 Score=38.22 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
....++.|||.|.+|.-++..+... |.+.+++|.+...+.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKAL---GANVTVGARKSAHLA 189 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECCHHHHH
Confidence 3467999999999999999998775 467788888766543
No 202
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=70.91 E-value=6.5 Score=39.37 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=26.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
+||.+||+|-.|..++.+|++.+ .+.++.|.+.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~~~~ 33 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTTIGP 33 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEeCCH
Confidence 47999999999999999999875 4545556553
No 203
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=70.81 E-value=18 Score=38.14 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=61.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||.|+|-|..+..++....+. |++++++++|...-......++..+.+++... + ....+.+.|
T Consensus 3 kkili~g~g~~~~~~~~aa~~l---G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~-------~------~~y~d~~~l 66 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKEL---GIKTVAVHSTADRDALHVLLADEAVCIGPAPS-------A------KSYLNIPNI 66 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHc---CCeEEEEEChhhhcccccccCCEEEEcCCCCc-------h------hchhCHHHH
Confidence 4899999999999999988776 68899998854321111112466777754210 0 011234455
Q ss_pred HHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 195 ~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.++. .++|.|+-..|+- .-.+.+++.+.+.|+.+++
T Consensus 67 ~~~a~~~~id~I~pg~g~~-----se~~~~a~~~e~~Gi~~~g 104 (449)
T TIGR00514 67 ISAAEITGADAIHPGYGFL-----SENANFAEQCERSGFTFIG 104 (449)
T ss_pred HHHHHHhCCCEEEeCCCcc-----ccCHHHHHHHHHCCCcEEC
Confidence 5544 4889888765321 1224477888888876654
No 204
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.66 E-value=56 Score=30.17 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.4
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
...++.|+|- |+.|..++..+.+.+ .+.+.++-+.+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R~~~~~ 65 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDLERA 65 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHH
Confidence 4568999996 999999998887753 4555666554443
No 205
>PRK13938 phosphoheptose isomerase; Provisional
Probab=70.44 E-value=59 Score=31.04 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcC------CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESS------MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~------~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
++-||.++|+|+.|..+-..-.+-- .+....+++..|...+... +. |-. .
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~----------~n----------d~~----~ 99 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAV----------AN----------DYD----Y 99 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHh----------hc----------ccc----H
Confidence 4579999999999988654433321 1123334444443333211 00 000 0
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEecc
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlP 240 (430)
.+-....+...+..-|++|++..= |.| --.--+++.||+.|+.+|+|..-|
T Consensus 100 ~~~~~~~~~~~~~~~DllI~iS~S-G~t--~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 100 DTVFARALEGSARPGDTLFAISTS-GNS--MSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCC-CCC--HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 111223344455667787777532 222 233445577899999999997544
No 206
>PRK13937 phosphoheptose isomerase; Provisional
Probab=70.40 E-value=44 Score=31.19 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCCeEEEEeeCcchHHHHH---HHH-HcC--CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVN---RMI-ESS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~---~m~-~~~--~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
+.-+|-++|.|..+..+.. .+. +.. ..++..+++..|...+.... . |+..
T Consensus 37 ~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~----------~----------d~~~---- 92 (188)
T PRK13937 37 NGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIG----------N----------DYGF---- 92 (188)
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHh----------c----------cCCH----
Confidence 4568999999998875432 232 121 13566666666655432210 0 0000
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF 241 (430)
.......+...+..-|++|++..= |. |.-.--+++.||+.|++||+|...|.
T Consensus 93 ~~~~~~~~~~~~~~~Dl~i~iS~s-G~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 93 ERVFSRQVEALGRPGDVLIGISTS-GN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCC-CC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 000112233345666888877543 22 23455566788999999999976443
No 207
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=70.26 E-value=26 Score=36.40 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
||.|||+|+.|-.++..|.+. |.+....|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~---G~~V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK---GAEVTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC---CCEEEEEeC
Confidence 589999999999777666665 556656553
No 208
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=69.84 E-value=13 Score=39.80 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH---
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN--- 188 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~--- 188 (430)
....++.|||.|..|.-++.+|.++++.. .+.+|=... .+++.|+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~--i~IaNRT~e------------------------------rA~~La~~~~ 223 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKK--ITIANRTLE------------------------------RAEELAKKLG 223 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCE--EEEEcCCHH------------------------------HHHHHHHHhC
Confidence 56778999999999999999999987633 344553222 1122222
Q ss_pred ---HhHHHHHHHhcCCCEEEEEc
Q 014098 189 ---ESKVAIEEAISGADMIFVTA 208 (430)
Q Consensus 189 ---e~~e~I~~~L~gaD~VfI~A 208 (430)
-..+++...|..+|+||...
T Consensus 224 ~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 224 AEAVALEELLEALAEADVVISST 246 (414)
T ss_pred CeeecHHHHHHhhhhCCEEEEec
Confidence 23688999999999999863
No 209
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=69.59 E-value=12 Score=38.30 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCc-ceEEEEeCc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTG-VEFWIVNTD 149 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~g-ve~iaiNTD 149 (430)
....||.|||+|+.|..++-.++.+++.+ +-.+-+|-|
T Consensus 18 ~~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~d 56 (332)
T KOG1495|consen 18 FKHNKITVVGVGQVGMACAISILLKGLADELVLVDVNED 56 (332)
T ss_pred ccCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcc
Confidence 33679999999999999988888887643 333334444
No 210
>PRK13660 hypothetical protein; Provisional
Probab=69.18 E-value=14 Score=35.17 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHhc-CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 192 VAIEEAIS-GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 192 e~I~~~L~-gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
++|.+.++ |.+-++ +|+.=|.-.=||-++.++-++..-+.++++ +||..-+.+=...-++=+..|.+.||-++
T Consensus 33 ~~l~~~~e~G~~wfi--~ggalG~d~wAaEvvl~LK~~yp~lkL~~~-~PF~~q~~~W~e~~q~~y~~i~~~aD~v~ 106 (182)
T PRK13660 33 RKLIALLEEGLEWVI--ISGQLGVELWAAEVVLELKEEYPDLKLAVI-TPFEEHGENWNEANQEKLANILKQADFVK 106 (182)
T ss_pred HHHHHHHHCCCCEEE--ECCcchHHHHHHHHHHHHHhhCCCeEEEEE-eCccchhhcCCHHHHHHHHHHHHhCCEEE
Confidence 45666665 555333 333333333456666666566444444443 79986555433445666778888888877
No 211
>PLN00203 glutamyl-tRNA reductase
Probab=68.79 E-value=17 Score=39.90 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=31.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
....+|.|||.|..|..++..|...+.. +.+++|-+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~--~V~V~nRs~era~ 304 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCT--KMVVVNRSEERVA 304 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCC--eEEEEeCCHHHHH
Confidence 5578999999999999999999876532 4667777655443
No 212
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=67.23 E-value=10 Score=37.48 Aligned_cols=106 Identities=17% Similarity=0.332 Sum_probs=59.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
....++.|+|.||+|..++..|.+.+. .+.+.+|-+.+...... .++ +. .+. ..+ .
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~~~~a~~l~----~~~--~~-----~~~---~~~-------~- 176 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV--AEITIVNRTVERAEELA----KLF--GA-----LGK---AEL-------D- 176 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHH----HHh--hh-----ccc---eee-------c-
Confidence 345689999999999999999987653 45666776655443221 011 00 000 000 0
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
.+..+.+.++|+|+=+...|=.......|+..+..+ .+..++=++..|..
T Consensus 177 ~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~-~~~~v~DivY~P~~ 226 (278)
T PRK00258 177 LELQEELADFDLIINATSAGMSGELPLPPLPLSLLR-PGTIVYDMIYGPLP 226 (278)
T ss_pred ccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcC-CCCEEEEeecCCCC
Confidence 022356688999888775543222233454333332 24566667777754
No 213
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=66.99 E-value=62 Score=27.37 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 201 aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
-|++|++ +..|.| --.-..++.||+.|+.+|+|.-.|.+
T Consensus 48 ~d~vi~i-S~sG~t--~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 48 GDVVIAI-SNSGET--DELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCEEEEE-eCCCCC--HHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3666666 554443 34455567788899999999655544
No 214
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.92 E-value=20 Score=32.40 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=25.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
||.|||.|..|.-++..|..++ .+......|.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g---~~V~l~~~~~~~~ 35 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG---HEVTLWGRDEEQI 35 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT---EEEEEETSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC---CEEEEEeccHHHH
Confidence 7999999999999999988875 4444444554433
No 215
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=66.90 E-value=18 Score=37.35 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 107 SVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 107 ~~~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
|.....+..+|-+||+|-.|..++.+|++.+ ....+.|-+..
T Consensus 28 s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G---~kVtV~dr~~~ 69 (327)
T KOG0409|consen 28 SSRITPSKTRIGFIGLGNMGSAMVSNLIKAG---YKVTVYDRTKD 69 (327)
T ss_pred cccCCcccceeeEEeeccchHHHHHHHHHcC---CEEEEEeCcHH
Confidence 3344446789999999999999999999984 55556664443
No 216
>PRK07877 hypothetical protein; Provisional
Probab=66.88 E-value=14 Score=42.09 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
....+.+|.|||+| .|+.++.+|...++-| ++..+|-|.-.+.+. ||+.... .-+| .| +...+++.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG-~l~lvD~D~ve~sNL-----nRq~~~~---~diG---~~-Kv~~a~~~ 168 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCG-ELRLADFDTLELSNL-----NRVPAGV---FDLG---VN-KAVVAARR 168 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCC-eEEEEcCCEEccccc-----ccccCCh---hhcc---cH-HHHHHHHH
Confidence 34567899999997 8999999998876411 577888888776654 4532211 1111 11 11111111
Q ss_pred -----------------hHHHHHHHhcCCCEEEEEccCCCCCCCCcHH-HHHHHHHHcCCcEEE
Q 014098 190 -----------------SKVAIEEAISGADMIFVTAGMGGGTGTGAAP-VIAGIAKSMGILTVG 235 (430)
Q Consensus 190 -----------------~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaP-vIA~~AKe~giltVa 235 (430)
+.+.+.+.++++|+|+=++- +=.+. .|.+.|++.+++.|.
T Consensus 169 l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D------~~~~R~~ln~~a~~~~iP~i~ 226 (722)
T PRK07877 169 IAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECD------SLDVKVLLREAARARRIPVLM 226 (722)
T ss_pred HHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCC------CHHHHHHHHHHHHHcCCCEEE
Confidence 12345667788998776543 22233 344678888888775
No 217
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=66.84 E-value=33 Score=38.17 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=55.7
Q ss_pred cccCCCCCCCCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCc
Q 014098 102 SLRQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNP 180 (430)
Q Consensus 102 ~~~~~~~~~~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP 180 (430)
.+++.++-+--+.++|.|.|. |-.|.+++.+|.+.+ +.+.++++-+...+........-.+..|. ++ |
T Consensus 303 ~~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~gD-l~-------d- 371 (660)
T PRK08125 303 RLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDIGSDAISRFLGHPRFHFVEGD-IS-------I- 371 (660)
T ss_pred EecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeCCchhhhhhcCCCceEEEecc-cc-------C-
Confidence 355555556667789999995 999999999998752 56777776543322211100011222221 11 1
Q ss_pred hHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 181 SVGMNAANESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 181 ~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
..+.+.++++++|.||=+|+..+.
T Consensus 372 ---------~~~~l~~~l~~~D~ViHlAa~~~~ 395 (660)
T PRK08125 372 ---------HSEWIEYHIKKCDVVLPLVAIATP 395 (660)
T ss_pred ---------cHHHHHHHhcCCCEEEECccccCc
Confidence 112356677899999999887654
No 218
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=66.83 E-value=1.6e+02 Score=35.03 Aligned_cols=97 Identities=28% Similarity=0.437 Sum_probs=57.8
Q ss_pred CCCeEEEEeeCc-----------chHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch
Q 014098 113 NEAKIKVIGVGG-----------GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS 181 (430)
Q Consensus 113 ~~~kIkVIGVGG-----------aG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~ 181 (430)
+-.||+|||.|. .|.-++..|.+. |++.+.+|.+........-.++..+.... ++
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~---G~~vi~v~~np~~~~~~~~~aD~~y~~p~----------~~- 70 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE---GYRVILVNSNPATIMTDPEMADKVYIEPL----------TP- 70 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHc---CCEEEEEecchhhccCChhcCCEEEECCC----------CH-
Confidence 346899999986 266788888664 78999999987643222112344443321 12
Q ss_pred HHHHHHHHhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHH--HHHHHHHHcCCcEEE
Q 014098 182 VGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAP--VIAGIAKSMGILTVG 235 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaP--vIA~~AKe~giltVa 235 (430)
+.|.+.+ ++.|.|+ .++||-||--.+- ..+.+++++|+..++
T Consensus 71 ----------~~v~~ii~~e~~DaIl--p~~gg~~~l~la~~l~~~~~le~~Gv~~~G 116 (1050)
T TIGR01369 71 ----------EAVEKIIEKERPDAIL--PTFGGQTALNLAVELEESGVLEKYGVEVLG 116 (1050)
T ss_pred ----------HHHHHHHHHhCCCEEE--ECCCChhHHHHHhhHHHHhHHHHCCCEEEC
Confidence 2233333 3577665 4778877653332 234567778877665
No 219
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=66.65 E-value=33 Score=35.42 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=53.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
++|.|+|. |-.|..++.-|.+++.+.++...+-+..++ ..++.+.. .+..+ +..+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a--------G~~l~~~~---------~~l~~------~~~~~ 61 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA--------GHSVPFAG---------KNLRV------REVDS 61 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC--------CCeeccCC---------cceEE------eeCCh
Confidence 78999998 777888888887666677776555333221 22222110 01100 00111
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
..++++|.+|++++ .|.+..++..+++.|+.+|-
T Consensus 62 --~~~~~vD~vFla~p------~~~s~~~v~~~~~~G~~VID 95 (336)
T PRK05671 62 --FDFSQVQLAFFAAG------AAVSRSFAEKARAAGCSVID 95 (336)
T ss_pred --HHhcCCCEEEEcCC------HHHHHHHHHHHHHCCCeEEE
Confidence 12578999999764 45677777877778876653
No 220
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.57 E-value=28 Score=37.30 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=51.7
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+.++.|+|.|..|..++..|... |.+.++.|.....+.... .....+..+. . .
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~---G~~v~~~D~~~~~~~~l~-~~g~~~~~~~----------~----------~--- 64 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRF---GARPTVCDDDPDALRPHA-ERGVATVSTS----------D----------A--- 64 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHH-hCCCEEEcCc----------c----------h---
Confidence 45899999999999999766654 567777665433222110 0001111111 0 0
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.++++|+|++..|.-= -.|.+ +.|++.|+++++
T Consensus 65 -~~~l~~~D~VV~SpGi~~-----~~p~~-~~a~~~gi~v~~ 99 (488)
T PRK03369 65 -VQQIADYALVVTSPGFRP-----TAPVL-AAAAAAGVPIWG 99 (488)
T ss_pred -HhHhhcCCEEEECCCCCC-----CCHHH-HHHHHCCCcEee
Confidence 123467899999877642 34665 566777777765
No 221
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=66.20 E-value=16 Score=34.29 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
....++.|+|.|-+|..++.+|... |+..++..+|+...
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DPi~a 59 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDPIRA 59 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSHHHH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECChHHH
Confidence 3467899999999999999999776 68888999987643
No 222
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=66.20 E-value=13 Score=37.22 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH---HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~---q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
...++.|+|.||+|..++-.|.+.+...+ ..+|-+. +.+.... .++ ... +.++. . ..+-.+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V--~I~~R~~~~~~~a~~l~----~~l--~~~---~~~~~--~---~~~d~~ 188 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEI--TIFNIKDDFYERAEQTA----EKI--KQE---VPECI--V---NVYDLN 188 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEE--EEEeCCchHHHHHHHHH----HHH--hhc---CCCce--e---EEechh
Confidence 34579999999999999988988765433 4455332 2211100 000 000 00000 0 000012
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHH-HHHHHHHcCCcEEEEEeccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPV-IAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPv-IA~~AKe~giltVaIVTlPF~ 242 (430)
+.+.+.+.++.+|+|+-+..+|=.-.....|+ -.+... .+..++=+|..|..
T Consensus 189 ~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~-~~~~v~D~vY~P~~ 241 (289)
T PRK12548 189 DTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR-KDLVVADTVYNPKK 241 (289)
T ss_pred hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC-CCCEEEEecCCCCC
Confidence 34456667788899999886553222233444 122222 23445668777754
No 223
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=65.88 E-value=1.2e+02 Score=28.46 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=103.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
++|.|.|. |..|..++.+|.+. +.+..++.-+...+.... ....+.++. ..+.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~---~~~v~~~~r~~~~~~~~~--~~v~~~~~d-------------------~~~~~~ 56 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR---GHEVRAAVRNPEAAAALA--GGVEVVLGD-------------------LRDPKS 56 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC---CCEEEEEEeCHHHHHhhc--CCcEEEEec-------------------cCCHhH
Confidence 46888874 78899999999887 677777776666554432 233344432 134667
Q ss_pred HHHHhcCCCEEEEEccCCCCCC-CCcHHH--HHHHHHHcCCcEEEEEeccCCc---hhHHHHHHHHHHHHHHHHhhc---
Q 014098 194 IEEAISGADMIFVTAGMGGGTG-TGAAPV--IAGIAKSMGILTVGIATVPFCF---EGRRRAIQAQEGVANLRNNVD--- 264 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTG-TGaaPv--IA~~AKe~giltVaIVTlPF~f---EG~~r~~~A~~gL~~L~~~vD--- 264 (430)
+...++|.|.++++.+.-.+.. .-..+. +.+.+++.+..+..++.+.... ........+....+.+-..+.
T Consensus 57 l~~a~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~ 136 (275)
T COG0702 57 LVAGAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPY 136 (275)
T ss_pred HHHHhccccEEEEEecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCe
Confidence 8889999999999888654221 222222 2455666553333333332211 122222333344444443332
Q ss_pred cccc-Cccc-cccHHHHHHHHhhcCeeEEEEEEe-c---CCchHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCCHH
Q 014098 265 TLII-PGLV-NVDFADVRAIMKDAGSSLMGIGTA-T---GKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLF 338 (430)
Q Consensus 265 ~lI~-pglI-NvDfaDvk~Il~~~G~A~mGiG~a-~---G~~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~L~ 338 (430)
+++. ++++ +.+..=+...+... ..++..+.+ . ..+....++..++..|. ..+-...++|..-+++.
T Consensus 137 t~lr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~-------~~~~~~~l~g~~~~~~~ 208 (275)
T COG0702 137 TTLRRAAFYLGAGAAFIEAAEAAG-LPVIPRGIGRLSPIAVDDVAEALAAALDAPA-------TAGRTYELAGPEALTLA 208 (275)
T ss_pred EEEecCeeeeccchhHHHHHHhhC-CceecCCCCceeeeEHHHHHHHHHHHhcCCc-------ccCcEEEccCCceecHH
Confidence 3333 3332 22211144444433 222222221 0 11334445556665553 23455666665567777
Q ss_pred HHHHHHHHH
Q 014098 339 EVNTAAEVI 347 (430)
Q Consensus 339 Ev~~a~~~I 347 (430)
|..+.+...
T Consensus 209 ~~~~~l~~~ 217 (275)
T COG0702 209 ELASGLDYT 217 (275)
T ss_pred HHHHHHHHH
Confidence 776655553
No 224
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=65.23 E-value=1.3e+02 Score=28.76 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.6
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
+|.|.|. |-.|++++++|.+. |.+.++++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~---g~~V~~~~r~~ 34 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA---GHDVRGLDRLR 34 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC---CCeEEEEeCCC
Confidence 4999995 99999999999987 56666666543
No 225
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=65.06 E-value=13 Score=35.27 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
...+++|.|+|.|..|..++.+|.+. |.+.+++|.+.+.+..
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~~~~~~~ 66 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADINEEAVAR 66 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCHHHHHH
Confidence 34567899999999999999999886 5678888888776544
No 226
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=64.92 E-value=14 Score=37.84 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
...+.+|.|||.|..|..++.+|... |.+.+++|.+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~~~ 179 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGF---GATITAYDAYP 179 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCCh
Confidence 45677999999999999999998765 56667776543
No 227
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=64.91 E-value=14 Score=37.62 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
+||.+||.|..|..++.+|++. |.+..+.|-+...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a---G~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA---GHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC---CCEEEEEeCChhh
Confidence 4899999999999999999997 4778888876554
No 228
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.82 E-value=56 Score=34.27 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=25.1
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+|.|+|+|+.|..++..|.+.+ ......|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG---AEVAAYDA 36 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 468999999999999988887764 55555554
No 229
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=64.73 E-value=14 Score=40.87 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+.++.|+|.|..|..+++.|.++ +.+++++|.|.+..+.... ...++..|.- .+|++=+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d~~~v~~~~~-~g~~v~~GDa--------t~~~~L~--------- 458 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERDISAVNLMRK-YGYKVYYGDA--------TQLELLR--------- 458 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHh-CCCeEEEeeC--------CCHHHHH---------
Confidence 45799999999999999998765 6789999999987764321 2345555541 2332222
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcC--CcEEEEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIA 237 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~g--iltVaIV 237 (430)
..-++++|+++++.+= .-..-.++..+|++. ..+++-+
T Consensus 459 -~agi~~A~~vv~~~~d-----~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 459 -AAGAEKAEAIVITCNE-----PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -hcCCccCCEEEEEeCC-----HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1235689988877432 234556778888864 4555544
No 230
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.73 E-value=19 Score=39.15 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+-.|.|+|.|..|.+++++|.++ +.+++++|.|.+..+... .....+..|. +.||+.=+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d~~~~~~~~-~~g~~~i~GD--------~~~~~~L~--------- 475 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETSRTRVDELR-ERGIRAVLGN--------AANEEIMQ--------- 475 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---CCCEEEEECCHHHHHHHH-HCCCeEEEcC--------CCCHHHHH---------
Confidence 45799999999999999999876 578999999988765432 1234444543 12332222
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHc--CCcEEEEEe
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVGIAT 238 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~--giltVaIVT 238 (430)
+.-++++|+++++.+=. -..-.++..+|++ .+.+++-+.
T Consensus 476 -~a~i~~a~~viv~~~~~-----~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 476 -LAHLDCARWLLLTIPNG-----YEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred -hcCccccCEEEEEcCCh-----HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 12456899888874311 1122344445554 456666653
No 231
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=64.34 E-value=23 Score=34.44 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
+......++.|||.||-|+-++.+|...++.. .+.+|-|.-.+.+.
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~--l~i~D~d~v~~snL 70 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVGK--LTIVDFDTVELSNL 70 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHcCCCe--EEEEcCCccccccc
Confidence 44456679999999999999999999998755 56788888887664
No 232
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=64.31 E-value=17 Score=38.17 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=30.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
|||.|||.|-.|..++.. +.. |.+.+.+|.|.+.++..
T Consensus 1 mkI~VIGlGyvGl~~A~~-lA~---G~~VigvD~d~~kv~~l 38 (388)
T PRK15057 1 MKITISGTGYVGLSNGLL-IAQ---NHEVVALDILPSRVAML 38 (388)
T ss_pred CEEEEECCCHHHHHHHHH-HHh---CCcEEEEECCHHHHHHH
Confidence 589999999999999954 443 57889999998877654
No 233
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=63.99 E-value=56 Score=31.00 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~ia-iNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..+|.|||.|..|..++..+.. ...+++.++ +|.|.+.... .+ + | .|- ...+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~d~~~~~~-------~i--~-----g-----~~v-------~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDVDPEKIGT-------KI--G-----G-----IPV-------YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEECChhhcCC-------Ee--C-----C-----eEE-------cCHH
Confidence 4689999999999998886432 234677654 5666443211 11 0 1 110 0133
Q ss_pred HHHHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 193 AIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 193 ~I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
++.+.++ +.|.++|++.. .....+++.+.+.|+..|
T Consensus 137 ~l~~li~~~~iD~ViIa~P~------~~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 137 ELEEVVKENDIEIGILTVPA------EAAQEVADRLVEAGIKGI 174 (213)
T ss_pred HHHHHHHHCCCCEEEEeCCc------hhHHHHHHHHHHcCCCEE
Confidence 4555553 59999999765 335567788888887543
No 234
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=63.83 E-value=22 Score=36.22 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
...+.++.|||+||.|+-++.+|...|+.. +..+|.|.-.+.
T Consensus 23 KL~~SrVLVVG~GGLGsEVAKnLaLAGVGs--ItIvDdD~Ve~S 64 (287)
T PTZ00245 23 QLMHTSVALHGVAGAAAEAAKNLVLAGVRA--VAVADEGLVTDA 64 (287)
T ss_pred HHhhCeEEEECCCchHHHHHHHHHHcCCCe--EEEecCCccchh
Confidence 345678999999999999999999987643 455676655443
No 235
>PRK08507 prephenate dehydrogenase; Validated
Probab=63.69 E-value=12 Score=36.78 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
+||.|||.|..|..++..|.+.+. .++.+.+|.+.+.++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~ 40 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKK 40 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHH
Confidence 479999999999999999988764 3567778888776543
No 236
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.50 E-value=23 Score=37.34 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=25.4
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+|.|||+|+.|-.++..|.+. |.+....|.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~---G~~v~~~D~ 40 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAG---GAEVIAWDD 40 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHC---CCEEEEECC
Confidence 45899999999999998888776 456666664
No 237
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=63.48 E-value=11 Score=34.72 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=47.3
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 109 ~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
.....+.++.|||.|..|..++.++... |.+.+++|.....-.... ...
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~~~~~~~---~~~------------------------- 79 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPKPEEGAD---EFG------------------------- 79 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCHHHHHHH---HTT-------------------------
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCChhhhcc---ccc-------------------------
Confidence 3456678999999999999999999765 568888887554321000 000
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
.....+.+.++.+|+|++.+-+---
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~ 104 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPE 104 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTT
T ss_pred ceeeehhhhcchhhhhhhhhccccc
Confidence 0123456788889999998876443
No 238
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=62.90 E-value=92 Score=30.79 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=26.4
Q ss_pred hcCCCEEEEEccCCCCCCCCcHHHHH---HHHHHcCCcEEEEEeccCC
Q 014098 198 ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 198 L~gaD~VfI~AGLGGGTGTGaaPvIA---~~AKe~giltVaIVTlPF~ 242 (430)
+..-|+||+++ . +|-+|.+. +.||+.|++||+|.--|.+
T Consensus 116 l~~~DvvI~IS-~-----SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s 157 (257)
T cd05007 116 LTERDVVIGIA-A-----SGRTPYVLGALRYARARGALTIGIACNPGS 157 (257)
T ss_pred CCCCCEEEEEe-C-----CCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 46778886664 3 34455554 5678899999999765543
No 239
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=62.56 E-value=44 Score=33.08 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=56.4
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEE-Ee-CcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWI-VN-TDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~ia-iN-TD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+||.|+| .|..|..++..+.+. +++++++ ++ .+.+..... ++.. .|.. . .+. ....+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~---------~~~~--~~~~--~---~gv-~~~~d~ 62 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTD---------AGEL--AGIG--K---VGV-PVTDDL 62 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCC---------HHHh--cCcC--c---CCc-eeeCCH
Confidence 6899999 599999999998765 5777655 44 222211000 0000 0000 0 000 011233
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCc
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF 243 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~f 243 (430)
+++ ...+|+|+.++ ...+...+++.|-+.|+.+|.=- ..|..
T Consensus 63 ~~l---~~~~DvVIdfT------~p~~~~~~~~~al~~g~~vVigt-tg~~~ 104 (266)
T TIGR00036 63 EAV---ETDPDVLIDFT------TPEGVLNHLKFALEHGVRLVVGT-TGFSE 104 (266)
T ss_pred HHh---cCCCCEEEECC------ChHHHHHHHHHHHHCCCCEEEEC-CCCCH
Confidence 333 35689988875 34667777888888998876543 36643
No 240
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=62.24 E-value=29 Score=35.77 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=56.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEE-eCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iai-NTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
+||.|||. |-.|..++..|.++ +.++.+++ ..+.++-+.... ...++. +.. +. .. +..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~~-~~~~l~-~~~---------~~-----~~-~~~- 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSE-VHPHLR-GLV---------DL-----NL-EPI- 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChHH-hCcccc-ccC---------Cc-----ee-ecC-
Confidence 48999999 88999999988754 67777754 555321110000 000000 000 00 00 000
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCch
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE 244 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fE 244 (430)
+..+.++++|+||++.+ ++.+.-++..+.+.|..+|-. +-.|+++
T Consensus 61 ~~~~~~~~~DvVf~alP------~~~s~~~~~~~~~~G~~VIDl-S~~fR~~ 105 (346)
T TIGR01850 61 DEEEIAEDADVVFLALP------HGVSAELAPELLAAGVKVIDL-SADFRLK 105 (346)
T ss_pred CHHHhhcCCCEEEECCC------chHHHHHHHHHHhCCCEEEeC-ChhhhcC
Confidence 11233458999999864 457777777776778655543 3456555
No 241
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=61.82 E-value=1e+02 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
.+..+.+.+.++++|+|++....-++..-.....+++.||+.|++++
T Consensus 131 ~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ 177 (315)
T TIGR02198 131 ARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVL 177 (315)
T ss_pred HHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEE
Confidence 34455667788999999986332122211224456678888888754
No 242
>PRK08605 D-lactate dehydrogenase; Validated
Probab=61.68 E-value=14 Score=37.73 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
...+.+|.|||.|..|..++.++.+ + -+.+.++.|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~-~-~g~~V~~~d~~ 179 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAK-G-YGSDVVAYDPF 179 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHh-c-CCCEEEEECCC
Confidence 4567899999999999999999843 2 36677777644
No 243
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=61.30 E-value=11 Score=38.18 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=31.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
++|-+||+|-.|.|+|.+++.. +.++++.|-|+.+.+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~---ghdvV~yD~n~~av~~ 38 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG---GHDVVGYDVNQTAVEE 38 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC---CCeEEEEcCCHHHHHH
Confidence 5799999999999999999987 5778888877766543
No 244
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=61.26 E-value=1.2e+02 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccC
Q 014098 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (430)
Q Consensus 196 ~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF 241 (430)
..+..-|++|+++- .|.| .-.--+++.||+.|+.+|+|...|.
T Consensus 97 ~~~~~~Dv~I~iS~-SG~t--~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 97 ALGQPGDVLIGIST-SGNS--PNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred HhCCCCCEEEEEeC-CCCC--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34566787777753 3322 3444556778899999999975543
No 245
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.18 E-value=41 Score=35.12 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=24.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+|.|+|+|+.|-.++..|.+. |.+....|.
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~---G~~v~~~D~ 37 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLAR---GVTPRVIDT 37 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC---CCeEEEEcC
Confidence 45799999999999999776665 456666554
No 246
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=61.16 E-value=28 Score=36.69 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
....++.|||.|..|.-++..|...+. .+.+++|.+...
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~rs~~r 216 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV--GKILIANRTYER 216 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC--CEEEEEeCCHHH
Confidence 456799999999999999999987643 456677876554
No 247
>PRK12320 hypothetical protein; Provisional
Probab=60.50 E-value=35 Score=38.82 Aligned_cols=183 Identities=15% Similarity=0.191 Sum_probs=93.7
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
|||.|.| -|..|.+++++|++.+ .+.++++-....+.. ....+.-+. + .|+ .
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr~~~~~~~----~~ve~v~~D-l-------~d~------------~ 53 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQHPHDALD----PRVDYVCAS-L-------RNP------------V 53 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCChhhccc----CCceEEEcc-C-------CCH------------H
Confidence 5899999 6999999999999864 566666643222110 011222111 1 011 2
Q ss_pred HHHHhcCCCEEEEEccCCCCC----CCCcHHHHHHHHHHcCCcEEEEEec---cCCchhHHHHHHHHHHHHHHHHhhccc
Q 014098 194 IEEAISGADMIFVTAGMGGGT----GTGAAPVIAGIAKSMGILTVGIATV---PFCFEGRRRAIQAQEGVANLRNNVDTL 266 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGT----GTGaaPvIA~~AKe~giltVaIVTl---PF~fEG~~r~~~A~~gL~~L~~~vD~l 266 (430)
+.+++.++|.||-+|+..... -..++-.+++.|++.|+..|-+-+. |..+ ..++..+.. ...+.+
T Consensus 54 l~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~G~~~~~------~~aE~ll~~--~~~p~~ 125 (699)
T PRK12320 54 LQELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQAAGRPELY------RQAETLVST--GWAPSL 125 (699)
T ss_pred HHHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECCCCCCccc------cHHHHHHHh--cCCCEE
Confidence 455677899999999874211 0122445678888888754433222 2110 112222211 124555
Q ss_pred c-----cCccccccH---HHHHHHHhhc--CeeEEEEEEecCCchHHHHHHHHHhCCCCcCCccccCceEEEEEeCCCCC
Q 014098 267 I-----IPGLVNVDF---ADVRAIMKDA--GSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLT 336 (430)
Q Consensus 267 I-----~pglINvDf---aDvk~Il~~~--G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg~dl~ 336 (430)
| .-|- ..++ .-+..++... +.-+- + .. -+.+.+|+..++..+ ..+ ++||.++..+|
T Consensus 126 ILR~~nVYGp-~~~~~~~r~I~~~l~~~~~~~pI~-v-Iy--VdDvv~alv~al~~~--------~~G-iyNIG~~~~~S 191 (699)
T PRK12320 126 VIRIAPPVGR-QLDWMVCRTVATLLRSKVSARPIR-V-LH--LDDLVRFLVLALNTD--------RNG-VVDLATPDTTN 191 (699)
T ss_pred EEeCceecCC-CCcccHhHHHHHHHHHHHcCCceE-E-EE--HHHHHHHHHHHHhCC--------CCC-EEEEeCCCeeE
Confidence 5 1221 1222 2233444321 21111 1 01 134555665665432 124 89999999999
Q ss_pred HHHHHHHHHH
Q 014098 337 LFEVNTAAEV 346 (430)
Q Consensus 337 L~Ev~~a~~~ 346 (430)
+.|+.+++..
T Consensus 192 i~el~~~i~~ 201 (699)
T PRK12320 192 VVTAWRLLRS 201 (699)
T ss_pred HHHHHHHHHH
Confidence 9996665544
No 248
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.14 E-value=68 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..++.|+|.|+.|-.++..|.+. |.+.+..|.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~---G~~V~~~d~ 36 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKL---GANVTVNDG 36 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC---CCEEEEEcC
Confidence 45799999999999998888876 456556554
No 249
>PRK06182 short chain dehydrogenase; Validated
Probab=60.10 E-value=46 Score=31.77 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=49.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..++.|.|. |+.|..++.++.+. |.+.+++.-+.+.|..... .......+ ++ .|++ ..++..+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~~~l~~~~~-~~~~~~~~-Dv-------~~~~----~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ---GYTVYGAARRVDKMEDLAS-LGVHPLSL-DV-------TDEA----SIKAAVD 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-CCCeEEEe-eC-------CCHH----HHHHHHH
Confidence 457899996 78899999999875 5677777766666543210 01112111 11 1232 2223344
Q ss_pred HHHHHhcCCCEEEEEccCCC
Q 014098 193 AIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGG 212 (430)
++.+...+.|.||..||.+.
T Consensus 67 ~~~~~~~~id~li~~ag~~~ 86 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYGS 86 (273)
T ss_pred HHHHhcCCCCEEEECCCcCC
Confidence 45555668999999998753
No 250
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=60.06 E-value=36 Score=33.92 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
...++.|||.||+|..++-.|.+.+.. +...+|-+.+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~--~i~I~nRt~~ 160 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVT--DITVINRNPD 160 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCC--eEEEEeCCHH
Confidence 356899999999999999999887643 3555675543
No 251
>PRK12829 short chain dehydrogenase; Provisional
Probab=60.05 E-value=43 Score=31.37 Aligned_cols=87 Identities=18% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC-CCCc--eEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPEN--RLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~-~a~~--ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
...++.|+|. |+.|..++.+|.++ |.+++.+..|...+..... .... .+.... + .|++ ...
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D-~-------~~~~----~~~ 74 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA---GARVHVCDVSEAALAATAARLPGAKVTATVAD-V-------ADPA----QVE 74 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHhcCceEEEEcc-C-------CCHH----HHH
Confidence 4468999997 77888899999886 4566677666544432100 0011 122211 1 1232 233
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGT 214 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGT 214 (430)
+..+++.+.+.+.|.||..||.....
T Consensus 75 ~~~~~~~~~~~~~d~vi~~ag~~~~~ 100 (264)
T PRK12829 75 RVFDTAVERFGGLDVLVNNAGIAGPT 100 (264)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 44556666778999999999876443
No 252
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.02 E-value=1.7e+02 Score=29.41 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=24.6
Q ss_pred EEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEE-----eccCCchhHHHHHHHHHHHHHHHHhhc
Q 014098 204 IFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA-----TVPFCFEGRRRAIQAQEGVANLRNNVD 264 (430)
Q Consensus 204 VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIV-----TlPF~fEG~~r~~~A~~gL~~L~~~vD 264 (430)
++++||.--=-..-.+-.+|+.+|+.|+.++=.- |.|.+|+|.- .++++.|++++.
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g-----~~gl~~l~~~~~ 88 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-----EEGLKILKEVGD 88 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH-----HHHHHHHHHHHH
Confidence 3444444333333334444455555554433222 2255555432 455555555543
No 253
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=60.01 E-value=32 Score=32.86 Aligned_cols=88 Identities=10% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH-HhhhcCCCCCCceEEc--CCccCCCCCCCCCchHHHHHHH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA-QAMKVSPVIPENRLQI--GCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~-q~L~~s~~~a~~ki~i--G~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..+.++.|||-|..|..-+..|++.+ .+..+++.+. ..|.... ...++.+ +. ..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g---a~VtVvsp~~~~~l~~l~--~~~~i~~~~~~-----------~~------- 63 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG---AQLRVIAEELESELTLLA--EQGGITWLARC-----------FD------- 63 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC---CEEEEEcCCCCHHHHHHH--HcCCEEEEeCC-----------CC-------
Confidence 45569999999999999999999875 4555555432 1222110 0123322 21 00
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcE
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILT 233 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gilt 233 (430)
..-+.++++||++.+- ......|++.|++.++++
T Consensus 64 ------~~dl~~~~lVi~at~d-----~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 64 ------ADILEGAFLVIAATDD-----EELNRRVAHAARARGVPV 97 (205)
T ss_pred ------HHHhCCcEEEEECCCC-----HHHHHHHHHHHHHcCCEE
Confidence 1236788888876433 123456778888877665
No 254
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=60.00 E-value=9.5 Score=39.78 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=30.3
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
=+.|||+||.|+-+++.|++.+.+.+ ..+|.|+-+|..
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi--~iVDfdqVSlsS 113 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKI--RIVDFDQVSLSS 113 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceE--EEechhhccHhh
Confidence 48999999999999999999976543 457777766654
No 255
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=59.79 E-value=28 Score=35.98 Aligned_cols=79 Identities=22% Similarity=0.377 Sum_probs=48.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCC--cceEEE-EeC-----cHHhhhcCCCCCCceEEcCCccCCCCCCCCCchH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMT--GVEFWI-VNT-----DAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSV 182 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~--gve~ia-iNT-----D~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~v 182 (430)
..+..|+.|+|.+|+=+-=+.-|++.+.. ...++- .|| |..+++... ..+=..|
T Consensus 25 ~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s---~V~g~~g--------------- 86 (345)
T KOG1494|consen 25 SQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNS---SVVGFTG--------------- 86 (345)
T ss_pred ccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCC---ceeccCC---------------
Confidence 45678999999877766667777777632 222222 233 444433211 1111111
Q ss_pred HHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 183 GMNAANESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 183 G~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.+++.++|+++|+|+|-||+==--|
T Consensus 87 --------~~~L~~al~~advVvIPAGVPRKPG 111 (345)
T KOG1494|consen 87 --------ADGLENALKGADVVVIPAGVPRKPG 111 (345)
T ss_pred --------hhHHHHHhcCCCEEEecCCCCCCCC
Confidence 3478899999999999999865444
No 256
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=59.62 E-value=1.1e+02 Score=27.75 Aligned_cols=38 Identities=26% Similarity=0.548 Sum_probs=22.1
Q ss_pred CeEEEEeeCcchH--HHHHHHHHcCC-Ccce-EEEEeCcHHh
Q 014098 115 AKIKVIGVGGGGS--NAVNRMIESSM-TGVE-FWIVNTDAQA 152 (430)
Q Consensus 115 ~kIkVIGVGGaG~--NiV~~m~~~~~-~gve-~iaiNTD~q~ 152 (430)
-+|.++|+||... .++..+..... .+.. ++..|+|...
T Consensus 21 ~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~ 62 (158)
T cd05015 21 TDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDD 62 (158)
T ss_pred CEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHH
Confidence 4699999999544 34444433322 2444 3456778643
No 257
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=59.57 E-value=33 Score=32.27 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=48.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
++|.|+|. |+.|..++.+|.++ |.+.+.+..+...+.........++. +--++ .|++ ..++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~----~i~~~~~ 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ---GHKVIATGRRQERLQELKDELGDNLYIAQLDV-------RNRA----AIEEMLA 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhccceEEEEecC-------CCHH----HHHHHHH
Confidence 47889986 77889999999876 45677777665544321100001111 11111 1222 2233445
Q ss_pred HHHHHhcCCCEEEEEccCC
Q 014098 193 AIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLG 211 (430)
++.+.+.+.|.|+..||..
T Consensus 67 ~~~~~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 SLPAEWRNIDVLVNNAGLA 85 (248)
T ss_pred HHHHHcCCCCEEEECCCcc
Confidence 5666677899999998864
No 258
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=59.38 E-value=52 Score=34.12 Aligned_cols=94 Identities=16% Similarity=0.309 Sum_probs=52.1
Q ss_pred CCCCeEEEEeeCcchH-HHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 112 NNEAKIKVIGVGGGGS-NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~-NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.+..||.|||.-|.-+ -++..|.+++.+.++...+-+..+ +.+++..+ | .+..+. +
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs--------aGk~~~~~-------~--~~~~v~------~ 61 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS--------AGKKVTFE-------G--RDYTVE------E 61 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC--------CCCeeeec-------C--ceeEEE------e
Confidence 3467899999866555 566555554566666555533311 12333221 1 111111 0
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
.+ .+.+.++|+||+++ |.|.+..++..+.+.|+.+|-.
T Consensus 62 ~~--~~~~~~~D~vf~a~------p~~~s~~~~~~~~~~g~~VIDl 99 (344)
T PLN02383 62 LT--EDSFDGVDIALFSA------GGSISKKFGPIAVDKGAVVVDN 99 (344)
T ss_pred CC--HHHHcCCCEEEECC------CcHHHHHHHHHHHhCCCEEEEC
Confidence 11 13457899999876 4556777777666677766543
No 259
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=58.94 E-value=11 Score=31.69 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=53.4
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..+.++.|||-|..|..-+..|++. +.+..++..+...++. .+.+-+. .
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~---gA~v~vis~~~~~~~~-------~i~~~~~---~------------------ 53 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA---GAKVTVISPEIEFSEG-------LIQLIRR---E------------------ 53 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC---TBEEEEEESSEHHHHT-------SCEEEES---S------------------
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECCchhhhhh-------HHHHHhh---h------------------
Confidence 3567899999999999999998876 4666666655322221 1121110 0
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
+.+.++++++||++.+= ......|.+.||++++++-
T Consensus 54 --~~~~l~~~~lV~~at~d-----~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 54 --FEEDLDGADLVFAATDD-----PELNEAIYADARARGILVN 89 (103)
T ss_dssp ---GGGCTTESEEEE-SS------HHHHHHHHHHHHHTTSEEE
T ss_pred --HHHHHhhheEEEecCCC-----HHHHHHHHHHHhhCCEEEE
Confidence 12338889988877432 2456788889999999853
No 260
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=58.67 E-value=15 Score=35.57 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
....++.|+|.|++|.-++..|.+.++..-++|.+|.+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 34568999999999999999998876542257888876
No 261
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=58.49 E-value=19 Score=36.27 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
..+|.|+|+|..|+.++..|.+.+. .+..+-.+-+...+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~ 42 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLK 42 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHH
Confidence 4689999999999999999987753 455555555554443
No 262
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=58.16 E-value=29 Score=35.67 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=54.9
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.|||. |..|...+..+.++ ++++.+++=.+.+.-+... ....++. +. .. ..-++.++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~-~~~~~~~-~~-----------~~----~~~~~~~~ 63 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLS-DVHPHLR-GL-----------VD----LVLEPLDP 63 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchH-HhCcccc-cc-----------cC----ceeecCCH
Confidence 68999998 77888888888654 5677655433322110000 0000000 00 00 00011111
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCch
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE 244 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fE 244 (430)
. ...++|+||++. +++.+.-++..+.+.|+.+|-. +-.|+++
T Consensus 64 ~--~~~~vD~Vf~al------P~~~~~~~v~~a~~aG~~VID~-S~~fR~~ 105 (343)
T PRK00436 64 E--ILAGADVVFLAL------PHGVSMDLAPQLLEAGVKVIDL-SADFRLK 105 (343)
T ss_pred H--HhcCCCEEEECC------CcHHHHHHHHHHHhCCCEEEEC-CcccCCC
Confidence 1 457899999964 4466777777776778766654 2466654
No 263
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=58.06 E-value=26 Score=36.40 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.0
Q ss_pred CCCeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
...+|.||| .|..|+.++..+.+.+ .+...+|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeCC
Confidence 447899999 9999999999998875 44555553
No 264
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=57.95 E-value=58 Score=32.76 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=56.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHH----hhhcCC--CC----CCceEEcCCccCCCCCCCCCchH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQ----AMKVSP--VI----PENRLQIGCDLTRGLGAGGNPSV 182 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q----~L~~s~--~~----a~~ki~iG~~~t~GlGaG~dP~v 182 (430)
.+||.|.|. |-.|.+++.+|++.+ .+.++++-... .+.... .. ..-++..|. +
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-i------------ 78 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN---QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGD-I------------ 78 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEcc-C------------
Confidence 468999996 999999999999874 56667654211 111000 00 001111221 1
Q ss_pred HHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCc------------HHHHHHHHHHcCCc
Q 014098 183 GMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGA------------APVIAGIAKSMGIL 232 (430)
Q Consensus 183 G~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGa------------aPvIA~~AKe~gil 232 (430)
.+.+.+.++++++|.||=+|+......+-. +--+.+.|++.++.
T Consensus 79 ------~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~ 134 (348)
T PRK15181 79 ------RKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS 134 (348)
T ss_pred ------CCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 124456777788999999998865432222 22455677777754
No 265
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.94 E-value=18 Score=35.63 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
++|.|||.|-.|+.++..|.+. +.+.+++|.+...++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~ 38 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCER 38 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence 4799999999999999999876 4577888888776654
No 266
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=57.86 E-value=20 Score=38.15 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=33.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s 156 (430)
...+||.|||.|-.|.-++-.+.+ +.+.+.+|.|.+..+..
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~----~~~V~g~D~~~~~ve~l 44 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK----SRQVVGFDVNKKRILEL 44 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc----CCEEEEEeCCHHHHHHH
Confidence 345899999999999999888644 37889999998876653
No 267
>PRK08655 prephenate dehydrogenase; Provisional
Probab=57.62 E-value=18 Score=38.41 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.3
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
++|.||| .|..|..++..|.+.+ .+.++++.|.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~r~~~~ 36 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTGRDPKK 36 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEECChHH
Confidence 5899998 8999999999998765 456666666554
No 268
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=57.51 E-value=17 Score=33.79 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
||.|||.|..|..++-.+... |.+...+|.|.+.|..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~ 37 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALER 37 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHh
Confidence 689999999999999998886 6888899999888765
No 269
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=57.39 E-value=1.9e+02 Score=31.58 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=25.9
Q ss_pred HHHHHHhc-CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEE
Q 014098 192 VAIEEAIS-GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237 (430)
Q Consensus 192 e~I~~~L~-gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIV 237 (430)
.+|.+.+. ..|.||+.+|- |||=+|.+-.+.+. .-.+.+|+|-
T Consensus 157 ~EI~~q~~~~~D~vvvpvGg-GGliaGia~~lk~~--~p~~kVIgVe 200 (499)
T TIGR01124 157 LEILRQVANPLDAVFVPVGG-GGLAAGVAALIKQL--MPEIKVIGVE 200 (499)
T ss_pred HHHHHhCCCCCCEEEEccCc-cHHHHHHHHHHHHh--CCCCEEEEEE
Confidence 34555565 68999888774 45545665554322 1257778883
No 270
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=57.32 E-value=57 Score=33.34 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=48.9
Q ss_pred CeEEEEeeCc-chHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGVGG-GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGVGG-aG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.|||.-| .|..++..|.+++.+.++..++-.+.+.-..... ....+.+. |++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~-~g~~i~v~-----------d~~------------ 57 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF-KGKELKVE-----------DLT------------ 57 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee-CCceeEEe-----------eCC------------
Confidence 5899999855 4555666666655666666666544332111100 00111111 110
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
...++++|+||.++ |.|.+..++..+.+.|+.+|
T Consensus 58 -~~~~~~vDvVf~A~------g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 58 -TFDFSGVDIALFSA------GGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred -HHHHcCCCEEEECC------ChHHHHHHHHHHHhCCCEEE
Confidence 01346899999875 55677777776667787444
No 271
>PLN02214 cinnamoyl-CoA reductase
Probab=57.28 E-value=1.1e+02 Score=30.71 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh-----hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA-----MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~-----L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..+|.|.|. |..|..++++|.+++ .+.+++.-+... +....- ...++.+=. +|.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~---------~Dl------- 69 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGTVRNPDDPKNTHLRELEG-GKERLILCK---------ADL------- 69 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEe---------cCc-------
Confidence 457999998 899999999999875 444444322211 111100 001111100 011
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCC-------CCcHHHHHHHHHHcCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTG-------TGAAPVIAGIAKSMGI 231 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTG-------TGaaPvIA~~AKe~gi 231 (430)
.+.+.+.++++++|.||-+|+..-..- .-++-.+.+.|++.++
T Consensus 70 -~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v 119 (342)
T PLN02214 70 -QDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKV 119 (342)
T ss_pred -CChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 234556777889999999998642100 0113345567777664
No 272
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.07 E-value=79 Score=33.76 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=27.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
.+.++.|+|.|-.|..+++.|.+. |.+.++.|.+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~---g~~v~~~d~~ 40 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAH---LPAQALTLFC 40 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHc---CCEEEEEcCC
Confidence 356899999999999999998776 5677776653
No 273
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=57.00 E-value=39 Score=32.41 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=23.8
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
+|.|.|. |..|..++.+|.+.+. ..+.++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-DAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-CCEEEEec
Confidence 5788997 8999999999988642 25566665
No 274
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=57.00 E-value=48 Score=35.52 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=60.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh--hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA--MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~--L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
.||+|+|-|..+.+++....+. |++.++++++... +... .++..+.++.. |. ....+.+
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~l---G~~~v~v~~~~d~~~~~~~--~AD~~~~i~~~----------~~----~~y~d~~ 63 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDL---HIKSVAIYTEPDRECLHVK--IADEAYRIGTD----------PI----KGYLDVK 63 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHc---CCeEEEEECCCccCCcchh--hcCEEEEcCCC----------ch----hcccCHH
Confidence 4899999999999999888765 6888888885432 2211 24777878642 10 0112345
Q ss_pred HHHHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 193 AIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 193 ~I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.|.+..+ ++|.|+-..|. ..-.+.+++.+.+.|+..++
T Consensus 64 ~i~~~a~~~~iDaI~pg~g~-----lsE~~~~a~~~e~~Gi~~iG 103 (478)
T PRK08463 64 RIVEIAKACGADAIHPGYGF-----LSENYEFAKAVEDAGIIFIG 103 (478)
T ss_pred HHHHHHHHhCCCEEEECCCc-----cccCHHHHHHHHHCCCceec
Confidence 5555553 57777664332 12235678888888876554
No 275
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=56.87 E-value=23 Score=38.00 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
.+.++.|+|.|..|..++..+... |++.++++.|...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~dp~r 247 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVDPIC 247 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCchh
Confidence 466899999999999999999776 4577888877543
No 276
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=56.41 E-value=25 Score=39.14 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
..++.|+|.|..|..++..|.++ +.+++++|.|.+..+.... ...++..|.- .||++=+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d~~~v~~~~~-~g~~v~~GDa--------t~~~~L~--------- 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDHDPDHIETLRK-FGMKVFYGDA--------TRMDLLE--------- 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHh-cCCeEEEEeC--------CCHHHHH---------
Confidence 45899999999999999888775 5789999999887654321 2455666542 2333222
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcC
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~g 230 (430)
..-++.+|+++++..= .-..-.++..+|+..
T Consensus 459 -~agi~~A~~vvv~~~d-----~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 459 -SAGAAKAEVLINAIDD-----PQTSLQLVELVKEHF 489 (621)
T ss_pred -hcCCCcCCEEEEEeCC-----HHHHHHHHHHHHHhC
Confidence 1245689988887521 245667778888874
No 277
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=56.19 E-value=29 Score=35.97 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
.+++|.|||. |-.|..++.-|.++..+..+...+-++.+ +-.++.++. .+..+ ++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s--------aG~~~~~~~---------~~~~v------~~~ 59 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES--------AGETLRFGG---------KSVTV------QDA 59 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc--------CCceEEECC---------cceEE------EeC
Confidence 4679999999 66666677766665567777766654422 134444321 11110 111
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
++ ..+.++|++|+++ +.|.+.-++..+.+.|+.+|-.
T Consensus 60 ~~--~~~~~~Dvvf~a~------p~~~s~~~~~~~~~~g~~VIDl 96 (336)
T PRK08040 60 AE--FDWSQAQLAFFVA------GREASAAYAEEATNAGCLVIDS 96 (336)
T ss_pred ch--hhccCCCEEEECC------CHHHHHHHHHHHHHCCCEEEEC
Confidence 11 1236899999976 4457767776666667765543
No 278
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=56.18 E-value=26 Score=27.17 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCCCccEEEeeeeCCCCCCeEEEEEE
Q 014098 338 FEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLI 376 (430)
Q Consensus 338 ~Ev~~a~~~I~~~~~~~a~Ii~G~~ide~l~d~vrVTvI 376 (430)
.|+..+++.+...+ ++-+++||...|+. ++++.+||.
T Consensus 14 ~dlYKvVDfLNktL-K~~~lmFGLs~d~~-~~k~vitIY 50 (52)
T PF14084_consen 14 DDLYKVVDFLNKTL-KDKNLMFGLSKDEK-EEKMVITIY 50 (52)
T ss_pred ccHHHHHHHHhhhh-hhccEEEEEeecCc-CCEEEEEEE
Confidence 47788889988888 45789999999887 788888886
No 279
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=56.14 E-value=24 Score=41.74 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCC---cceEEEEeCcHHhhhcC
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMT---GVEFWIVNTDAQAMKVS 156 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~---gve~iaiNTD~q~L~~s 156 (430)
...+|.|||+||.||.++..|...|+. .-++..+|-|.-.+.+.
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL 464 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL 464 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc
Confidence 458999999999999999999988762 23677888887766553
No 280
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=55.64 E-value=85 Score=34.77 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred CccceeecCCCCCccccccccCCCCCccccccCCCCCCCCC---CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 73 HPEVSMLSGDGTNVLFGSMKEGLGKSVSESLRQSSVPNNNN---EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
||-..|..+.-+....+-.+..+.+...--...+....... .+||.|.|. |..|..++.+|.+. +.++.....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkiLVtGa~G~iG~~l~~~L~~~---g~~v~~~~~ 412 (668)
T PLN02260 336 HPRMLMMPGVRLFDGSEEIKLSSSGSQTGLVVVTKPAGSSPGKPSLKFLIYGRTGWIGGLLGKLCEKQ---GIAYEYGKG 412 (668)
T ss_pred CCCcccccccccccchhhhccccccccccccccccccccCCCCCCceEEEECCCchHHHHHHHHHHhC---CCeEEeecc
Q ss_pred cHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCC-------------
Q 014098 149 DAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAIS--GADMIFVTAGMGGG------------- 213 (430)
Q Consensus 149 D~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGG------------- 213 (430)
| + .+.+.+...+. +.|.||=+|+..+.
T Consensus 413 ~--------l------------------------------~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~ 454 (668)
T PLN02260 413 R--------L------------------------------EDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVET 454 (668)
T ss_pred c--------c------------------------------ccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHH
Q ss_pred --CCCCcHHHHHHHHHHcCCcEEEEEe
Q 014098 214 --TGTGAAPVIAGIAKSMGILTVGIAT 238 (430)
Q Consensus 214 --TGTGaaPvIA~~AKe~giltVaIVT 238 (430)
.-..++-.+++.|++.|+..|-+.|
T Consensus 455 ~~~N~~gt~~l~~a~~~~g~~~v~~Ss 481 (668)
T PLN02260 455 IRANVVGTLTLADVCRENGLLMMNFAT 481 (668)
T ss_pred HHHHhHHHHHHHHHHHHcCCeEEEEcc
No 281
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.61 E-value=44 Score=35.08 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=23.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
-.|.|||+|+.|-.++..|.+. |.+....|.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~---G~~v~~~D~ 37 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ---GIPFAVMDS 37 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC---CCeEEEEeC
Confidence 3599999999999977777765 456666553
No 282
>PRK14982 acyl-ACP reductase; Provisional
Probab=55.31 E-value=40 Score=35.12 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=48.2
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHc-CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIES-SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~-~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
...+.++.|+|. |..|..++.+|.+. +. .+++.+|-+...+.... .. ++. +
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv--~~lilv~R~~~rl~~La----~e--l~~---------~---------- 204 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV--AELLLVARQQERLQELQ----AE--LGG---------G---------- 204 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC--CEEEEEcCCHHHHHHHH----HH--hcc---------c----------
Confidence 356678999999 89999999999754 22 35677787766554421 11 110 0
Q ss_pred HhHHHHHHHhcCCCEEEEEccCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
+...+.+.+.++|+||-+++..
T Consensus 205 -~i~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 205 -KILSLEEALPEADIVVWVASMP 226 (340)
T ss_pred -cHHhHHHHHccCCEEEECCcCC
Confidence 1123557889999999888764
No 283
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=55.27 E-value=19 Score=37.30 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=26.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC-------CcceEEEEe
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSM-------TGVEFWIVN 147 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~-------~gve~iaiN 147 (430)
||.|||-|..|..++..|...+. ..|..|..+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 68999999999999999987651 468888874
No 284
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=54.93 E-value=44 Score=35.26 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
....++.|||.|..|..++..+...+.. +.+++|-+....
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~--~V~v~~r~~~ra 219 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVR--KITVANRTLERA 219 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCC--eEEEEeCCHHHH
Confidence 4567999999999999999998765432 456677765543
No 285
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=54.77 E-value=83 Score=31.53 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC--CCCCCceEEc-CCccCCCCCCCCCchHHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQI-GCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s--~~~a~~ki~i-G~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++|.|.|. |..|..++.+|.+.+ .+.+++.-+....... ......++.+ -.++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl------------------ 67 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADL------------------ 67 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHhhccCCeEEEEECCC------------------
Confidence 4568999995 789999999999864 5655554433211100 0000112211 1111
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
.+.+.+.+++++.|.||-+|+..+.
T Consensus 68 ~~~~~~~~~~~~~d~Vih~A~~~~~ 92 (353)
T PLN02896 68 QEEGSFDEAVKGCDGVFHVAASMEF 92 (353)
T ss_pred CCHHHHHHHHcCCCEEEECCccccC
Confidence 1234566677789999999987543
No 286
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=54.65 E-value=1.4e+02 Score=29.26 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.2
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
|||.|+| -|..|..++.+|.+. +.+.++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN---GHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC---CCeEEEEe
Confidence 5799999 599999999999886 45666654
No 287
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=54.31 E-value=96 Score=33.02 Aligned_cols=40 Identities=30% Similarity=0.549 Sum_probs=25.9
Q ss_pred CeEEEEeeCc--chHHHHHHHHHcCC-CcceE-EEEeCcHHhhh
Q 014098 115 AKIKVIGVGG--GGSNAVNRMIESSM-TGVEF-WIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGG--aG~NiV~~m~~~~~-~gve~-iaiNTD~q~L~ 154 (430)
-.|.+||+|| .|..++.+++.... ....+ +.-|+|...+.
T Consensus 59 ~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~ 102 (410)
T PRK03868 59 KNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISIN 102 (410)
T ss_pred CEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHH
Confidence 4699999999 67777777654211 12333 35778887654
No 288
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=54.25 E-value=46 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=25.3
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 114 ~~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
..+|.|.| .|..|.+++.+|++++ .+.+++..|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG---YTVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC---CEEEEEEcC
Confidence 46899999 5999999999999874 455554443
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=53.94 E-value=26 Score=36.51 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..-++.|+|+||.|.-+++.....+ .+.+++++....++...- .|+|--+--. ..+..+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~-----------------lGAd~~i~~~-~~~~~~ 224 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKK-----------------LGADHVINSS-DSDALE 224 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHH-----------------hCCcEEEEcC-CchhhH
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+++. +|+++.+++ .-| ...-.+++|.-|.+++.
T Consensus 225 ~~~~~---~d~ii~tv~--~~~----~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 225 AVKEI---ADAIIDTVG--PAT----LEPSLKALRRGGTLVLV 258 (339)
T ss_pred HhHhh---CcEEEECCC--hhh----HHHHHHHHhcCCEEEEE
No 290
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.94 E-value=57 Score=30.75 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=48.7
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC-CCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~-~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
....++.|+|. |+-|..++.+|.++ |.+.+++..+...+..... .....++. +. .|++ ..+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~--D~-------~~~~----~~~~ 68 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAE---GATVVVGDIDPEAGKAAADEVGGLFVPT--DV-------TDED----AVNA 68 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHcCCcEEEe--eC-------CCHH----HHHH
Confidence 34568999999 88999999999886 4666776655443322100 00111211 11 1222 2233
Q ss_pred hHHHHHHHhcCCCEEEEEccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..+++.+.....|.||.+||..
T Consensus 69 ~~~~~~~~~~~id~vi~~ag~~ 90 (255)
T PRK06057 69 LFDTAAETYGSVDIAFNNAGIS 90 (255)
T ss_pred HHHHHHHHcCCCCEEEECCCcC
Confidence 3444555556789999998764
No 291
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=53.75 E-value=1.3e+02 Score=32.87 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCCCCeE-EEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKI-KVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kI-kVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
......+ ..||+..---..+..|++. |++++++|+
T Consensus 226 ~~GrL~Vgaavg~~~~~~~~~~~l~~a---g~d~i~id~ 261 (495)
T PTZ00314 226 SNGQLLVGAAISTRPEDIERAAALIEA---GVDVLVVDS 261 (495)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHC---CCCEEEEec
Confidence 3334444 3466655445677777776 688899987
No 292
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.68 E-value=1.6e+02 Score=30.80 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=66.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH-hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ-AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q-~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
+||.|||-|.-|..++.-+.+++ ..|..|+.|-+.. .++..+. ..+.+-|-.+...+- ...+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~--N~~yLp~i~lp~~l~--------------at~D 64 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRE--NPKYLPGILLPPNLK--------------ATTD 64 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCc--CccccCCccCCcccc--------------cccC
Confidence 68999999999999999998887 6788999886554 2333221 222333333322221 2344
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHH-c-CCcEEEEEeccCCchhHHHH
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS-M-GILTVGIATVPFCFEGRRRA 249 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe-~-giltVaIVTlPF~fEG~~r~ 249 (430)
+.++++++|+|+++.- +-+.+-+++..+. . .-.++..+|+=|.-+..+++
T Consensus 65 l~~a~~~ad~iv~avP------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 65 LAEALDGADIIVIAVP------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred HHHHHhcCCEEEEECC------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchH
Confidence 6777888888877632 2333333333331 1 23445566777776655554
No 293
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=53.30 E-value=1.5e+02 Score=30.83 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~ia-iNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
...||.|||. +.|.+-+..+.+. ..++++++ ++.|.+...... .++-+ ..+
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A----~~~gi----------------------~~y 53 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALA----HRLGV----------------------PLY 53 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHH----HHhCC----------------------Ccc
Confidence 3578999999 6687777776543 12677665 455554332210 01100 013
Q ss_pred HHHHHHhcCCCEEEEEccC--CCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 192 VAIEEAISGADMIFVTAGM--GGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGL--GGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
..+.+++.+.|+++|+... =+++. ..++..|-+.|+-++ +=+|+.
T Consensus 54 ~~~eell~d~Di~~V~ipt~~P~~~H----~e~a~~aL~aGkHVL--~EKPla 100 (343)
T TIGR01761 54 CEVEELPDDIDIACVVVRSAIVGGQG----SALARALLARGIHVL--QEHPLH 100 (343)
T ss_pred CCHHHHhcCCCEEEEEeCCCCCCccH----HHHHHHHHhCCCeEE--EcCCCC
Confidence 4456777888888887643 23333 344455556787665 459996
No 294
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=53.14 E-value=1.7e+02 Score=26.24 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCCCeEEEEeeCcch-HHHHHHHHHcC-CC------c----ceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCC
Q 014098 111 NNNEAKIKVIGVGGGG-SNAVNRMIESS-MT------G----VEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGG 178 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG-~NiV~~m~~~~-~~------g----ve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~ 178 (430)
.....+|.|+|-.++| +.+++++.... .. + +.++.++ +.+.+= .|.|++-..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------~~~~li--DtpG~~~~~ 78 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN--------------DGFRLV--DLPGYGYAK 78 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC--------------CcEEEE--eCCCCcccc
Confidence 3567899999999999 55778876543 11 1 1111111 122221 255666544
Q ss_pred CchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCch
Q 014098 179 NPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE 244 (430)
Q Consensus 179 dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fE 244 (430)
.+...+...........+....+|.++++....-+- +...-.+.+++++.+.+++.+++.--..+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL-KELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC-CHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 443222211111111111223456666655443222 12222345677888999888888765543
No 295
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=53.12 E-value=49 Score=33.59 Aligned_cols=92 Identities=18% Similarity=0.397 Sum_probs=55.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHH--hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQ--AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~ia-iNTD~q--~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+||.|||.|..|...+..+.+. +++++.+ ++-|.+ .+... .+ .|-..+ ..+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A-----~~--~Gi~~~----------------~~~~ 56 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARA-----RE--LGVKTS----------------AEGV 56 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHH-----HH--CCCCEE----------------ECCH
Confidence 6899999999999887777653 5666544 444433 22211 00 111000 0112
Q ss_pred HHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 192 VAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 192 e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
..++ .+.|+||+++ ++..-...+..+.+.|+.++.- +|..
T Consensus 57 ---e~ll~~~dIDaV~iaT------p~~~H~e~a~~al~aGk~VIde--kPa~ 98 (285)
T TIGR03215 57 ---DGLLANPDIDIVFDAT------SAKAHARHARLLAELGKIVIDL--TPAA 98 (285)
T ss_pred ---HHHhcCCCCCEEEECC------CcHHHHHHHHHHHHcCCEEEEC--Cccc
Confidence 2233 4789999985 5567777888888899887654 5554
No 296
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.11 E-value=23 Score=34.93 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=31.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.||.|||.|..|..++..+... |.+.+.+|.+.+.++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~ 42 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEA 42 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHH
Confidence 5799999999999999999877 4677788888777654
No 297
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=53.08 E-value=78 Score=33.04 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=56.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||.|||-|..|-.++....+. |.++++++++...-......++..+.++..... + ...+.++|
T Consensus 3 ~~ililg~g~~~~~~~~~a~~l---G~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~--~-----------~~~d~~~l 66 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKL---GIRTVAIYSEADRDALHVKMADEAYLIGGPRVQ--E-----------SYLNLEKI 66 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHc---CCeEEEEechhhccCcchhhCCEEEEcCCCCcc--c-----------cccCHHHH
Confidence 5899999999999988888775 688888887654321111013555656432110 0 01234455
Q ss_pred HHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 195 EEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 195 ~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
.+..+ +.|+|+...|+- .-.+.+++.+.++|+.++
T Consensus 67 ~~~~~~~~id~I~p~~~~~-----~e~~~~~~~~~~~g~~~~ 103 (450)
T PRK06111 67 IEIAKKTGAEAIHPGYGLL-----SENASFAERCKEEGIVFI 103 (450)
T ss_pred HHHHHHhCCCEEEeCCCcc-----ccCHHHHHHHHHCCCeEE
Confidence 55553 557777543321 111356777777786543
No 298
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=52.94 E-value=40 Score=32.33 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=22.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceE
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEF 143 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~ 143 (430)
-.+.++|+|--|-+.+=.|++..--|.+-
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~HRGGper 47 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEVHRGGPER 47 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcCCCeE
Confidence 35899999999999888887765445553
No 299
>PLN02778 3,5-epimerase/4-reductase
Probab=52.76 E-value=1.1e+02 Score=30.26 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=20.8
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcC
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESS 137 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~ 137 (430)
.+||.|.|. |-.|.+++.+|.+++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g 33 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG 33 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC
Confidence 478999995 889999999998875
No 300
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=52.36 E-value=16 Score=39.82 Aligned_cols=64 Identities=28% Similarity=0.518 Sum_probs=43.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH--hhhcCCCCCCceEEcCCccCCCCCCCCCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ--AMKVSPVIPENRLQIGCDLTRGLGAGGNP 180 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q--~L~~s~~~a~~ki~iG~~~t~GlGaG~dP 180 (430)
...||.|||.|-+|..++++|++++..++..+-. +|.. .....+. +++.|++|..--. |..+||
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa-~dRIGGRI~ti~~-~d~~ielGAqwih--G~~gNp 85 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA-SDRIGGRIHTIPF-ADGVIELGAQWIH--GEEGNP 85 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEe-ccccCceEeeEEc-CCCeEeecceeec--CCCCCh
Confidence 4459999999999999999999887666543221 2322 1122232 4688999987655 455677
No 301
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=52.31 E-value=1.6e+02 Score=32.25 Aligned_cols=36 Identities=11% Similarity=0.407 Sum_probs=24.3
Q ss_pred CCCCCCeEEE-EeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 110 NNNNEAKIKV-IGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 110 ~~~~~~kIkV-IGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+......+.. ||++.-.---++.|++. +++++++|+
T Consensus 232 d~~~~l~vgaavg~~~~~~~r~~~l~~a---g~d~i~iD~ 268 (505)
T PLN02274 232 GKDGKLLVGAAIGTRESDKERLEHLVKA---GVDVVVLDS 268 (505)
T ss_pred CCCCCEEEEEEEcCCccHHHHHHHHHHc---CCCEEEEeC
Confidence 3444444433 77766666677888876 689999997
No 302
>PRK07774 short chain dehydrogenase; Provisional
Probab=52.16 E-value=76 Score=29.53 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=51.0
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C-CCCceE-EcCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRL-QIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~-~a~~ki-~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++.|.|. |+.|..++.+|.+. |.+.+.++.+...+.... + ....++ .+-.+++ |++ ..+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~----~~~ 71 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALARE---GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-------DPD----SAK 71 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHH----HHH
Confidence 357999998 89999999999886 467777776654332110 0 000111 1111111 222 233
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
+..+++.+.+...|.||-+||..+.
T Consensus 72 ~~~~~~~~~~~~id~vi~~ag~~~~ 96 (250)
T PRK07774 72 AMADATVSAFGGIDYLVNNAAIYGG 96 (250)
T ss_pred HHHHHHHHHhCCCCEEEECCCCcCC
Confidence 3445566666789999999998653
No 303
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=52.12 E-value=14 Score=34.95 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccc
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI 267 (430)
.+.|.++++. ..-.+++|+.-|...=||-++.++-++..-+.+++| +||..-+.+=....++-+..|.+.+|-++
T Consensus 32 ~~~i~~lie~-G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v-~Pf~~q~~~W~~~~q~~y~~il~~aD~v~ 106 (177)
T PF06908_consen 32 KKQIIELIEE-GVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALV-LPFENQGNNWNEANQERYQSILEQADFVV 106 (177)
T ss_dssp HHHHHHHHTT-T--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEE-ESSB-TTTTS-HHHHHHHHHHHHH-SEEE
T ss_pred HHHHHHHHHC-CCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEE-EcccchhhcCCHHHHHHHHHHHHhCCEEE
Confidence 4456677764 444555566555555555555555444443344333 79976655444556777889999999776
No 304
>PRK07326 short chain dehydrogenase; Provisional
Probab=52.02 E-value=66 Score=29.68 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCceEE--cCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ--IGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~ki~--iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
+.++.|+|. |+.|..++.+|.++ |.+.++++.+...+.... .....+++ .+. + .|++ ...
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D-~-------~~~~----~~~ 70 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITARDQKELEEAAAELNNKGNVLGLAAD-V-------RDEA----DVQ 70 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEeeCCHHHHHHHHHHHhccCcEEEEEcc-C-------CCHH----HHH
Confidence 457999986 88999999999875 567777777665543210 00001111 111 1 1222 223
Q ss_pred HhHHHHHHHhcCCCEEEEEccC
Q 014098 189 ESKVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGL 210 (430)
+..+++.+.+...|.||.++|.
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 71 RAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 3445566667789999999864
No 305
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=51.18 E-value=71 Score=34.66 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=60.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH--hhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ--AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q--~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
.||+|+|=|..+..++..+.+. |++++++.+|.. ++... .++..+.+|..... . ...+.+
T Consensus 3 ~kvLIan~Geia~~iiraar~l---Gi~~V~v~s~~d~~a~~~~--~AD~~~~i~~~~~~--~-----------syld~~ 64 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACREL---GIKTVAVYSEADKNALFVK--YADEAYPIGPAPPS--K-----------SYLNIE 64 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHc---CCeEEEEeccccccccchh--hCCEEEEcCCCCcc--c-----------CccCHH
Confidence 4899999999999998888776 677888877543 33222 25778888752110 0 012344
Q ss_pred HHHHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 193 AIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 193 ~I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.|.+..+ ++|.|+-..|. ..-.|.+++.+.+.|+..++
T Consensus 65 ~i~~~a~~~~~daI~pg~gf-----lsE~~~~a~~~e~~gi~~iG 104 (499)
T PRK08654 65 RIIDVAKKAGADAIHPGYGF-----LAENPEFAKACEKAGIVFIG 104 (499)
T ss_pred HHHHHHHHhCCCEEEECCCc-----cccCHHHHHHHHHCCCcEEC
Confidence 5555543 56766653321 11235678888888876665
No 306
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=50.98 E-value=60 Score=33.44 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=50.7
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 116 KIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 116 kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
||.||| -|..|..+++.|.+++.+.++...+-.+.++ ..++.+. | .+..+. +.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~--------g~~~~~~-------~--~~~~~~------~~~-- 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA--------GRKVTFK-------G--KELEVN------EAK-- 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC--------CCeeeeC-------C--eeEEEE------eCC--
Confidence 588999 6777888888887766666665444333221 1122211 0 111110 011
Q ss_pred HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 195 ~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
.+.+.++|+||+++ |.+.+--++..+.+.|+.+|
T Consensus 56 ~~~~~~~D~v~~a~------g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 56 IESFEGIDIALFSA------GGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred hHHhcCCCEEEECC------CHHHHHHHHHHHHHCCCEEE
Confidence 12457899999986 45677777777777787544
No 307
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=50.58 E-value=83 Score=31.16 Aligned_cols=99 Identities=23% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCCcceEEE-EeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCC
Q 014098 137 SMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTG 215 (430)
Q Consensus 137 ~~~gve~ia-iNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTG 215 (430)
.++|++.+. ..|=.+++.......+.-|++.--...|.|. +-..+|++.-..+|++||+|.=..-|
T Consensus 22 ~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi------------~lL~~ir~~~~~~DVI~iTAA~d~~t- 88 (224)
T COG4565 22 QIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGI------------ELLPELRSQHYPVDVIVITAASDMET- 88 (224)
T ss_pred hCCCceEEEeeccHHHHHHHHHhhCCCEEEEeeccCCCccH------------HHHHHHHhcCCCCCEEEEeccchHHH-
Confidence 456766544 3343334433322234667776666666663 56778888889999999998653322
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHH
Q 014098 216 TGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLR 260 (430)
Q Consensus 216 TGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~ 260 (430)
|.+ |=..|+ |--..+||.|| |.++|.+...+-+
T Consensus 89 ------I~~-alr~Gv--~DYLiKPf~~e---Rl~~aL~~y~~~r 121 (224)
T COG4565 89 ------IKE-ALRYGV--VDYLIKPFTFE---RLQQALTRYRQKR 121 (224)
T ss_pred ------HHH-HHhcCc--hhheecceeHH---HHHHHHHHHHHHH
Confidence 322 223454 44455999998 5566666555433
No 308
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=50.56 E-value=1e+02 Score=28.10 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=25.8
Q ss_pred CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 201 aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
-|++|++ +..|.| .-.-.+++.||+.|+.+|+|.-.|.+
T Consensus 76 ~D~vI~i-S~sG~t--~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 76 GDLLIAI-SGSGET--SSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CCEEEEE-cCCCCc--HHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3666555 555544 23445667889999999999765554
No 309
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=50.53 E-value=83 Score=32.74 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=26.9
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEe-CcHH
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVN-TDAQ 151 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gve~iaiN-TD~q 151 (430)
|.|+|+|..|-+.++.+.++ ++++.++|| +|.+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD~~~~ 34 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTKTSPD 34 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEecCChH
Confidence 57999999999999988765 678998887 4554
No 310
>PRK07825 short chain dehydrogenase; Provisional
Probab=50.45 E-value=73 Score=30.36 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=50.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCC-CCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI-PENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~-a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..++.|.|. ||.|..++.+|.+. |...+++.-|...+...... ....+... ++ .|++ ..++..
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~-D~-------~~~~----~~~~~~ 69 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL---GARVAIGDLDEALAKETAAELGLVVGGPL-DV-------TDPA----SFAAFL 69 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhccceEEEc-cC-------CCHH----HHHHHH
Confidence 457999987 77888999999876 45666666666655432100 00111111 11 1232 233445
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
+++.+.....|.++..||.+.
T Consensus 70 ~~~~~~~~~id~li~~ag~~~ 90 (273)
T PRK07825 70 DAVEADLGPIDVLVNNAGVMP 90 (273)
T ss_pred HHHHHHcCCCCEEEECCCcCC
Confidence 566666778999999998754
No 311
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=50.32 E-value=63 Score=31.72 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=23.8
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
+.++.|.|. |+.|..++.+|.+.+ .+.+++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G---~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG---YTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC---CEEEEEE
Confidence 468999996 888999999999874 4554443
No 312
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.19 E-value=1.1e+02 Score=25.80 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=23.7
Q ss_pred CEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccC
Q 014098 202 DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (430)
Q Consensus 202 D~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF 241 (430)
|++|++ ...|.|- -.--.++.||+.|+.+|+|.-.|.
T Consensus 48 d~~I~i-S~sG~t~--e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 48 TLVIAI-SQSGETA--DTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred cEEEEE-eCCcCCH--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 565555 4444441 244556788899999999965554
No 313
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.18 E-value=27 Score=36.53 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=45.0
Q ss_pred CCeEEEEeeCcchH-----HHHHHHHHcCCCcceEEEEeC-cHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIGVGGGGS-----NAVNRMIESSMTGVEFWIVNT-DAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIGVGGaG~-----NiV~~m~~~~~~gve~iaiNT-D~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..-|.++||-|.|- .++.++.+++ ..|-+.|.|| =+.+.++..+.++ | +|-..-.+. -|+||.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~e-r--~gv~vI~~~-~G~DpA------ 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGE-R--LGVPVISGK-EGADPA------ 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHH-H--hCCeEEccC-CCCCcH------
Confidence 56799999999994 4666665554 3455677777 2222222211011 1 233333333 578884
Q ss_pred HHhHHHHHHHh-cCCCEEEE
Q 014098 188 NESKVAIEEAI-SGADMIFV 206 (430)
Q Consensus 188 ~e~~e~I~~~L-~gaD~VfI 206 (430)
---++.|..+. ++.|+|+|
T Consensus 208 aVafDAi~~Akar~~Dvvli 227 (340)
T COG0552 208 AVAFDAIQAAKARGIDVVLI 227 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 12344454444 68888887
No 314
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=50.10 E-value=81 Score=34.06 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=53.1
Q ss_pred HHHhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEe------------------ccCC----
Q 014098 187 ANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT------------------VPFC---- 242 (430)
Q Consensus 187 A~e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVT------------------lPF~---- 242 (430)
+++.-.+|-+.| +++|.|++++.-|=.| =..-.+++...+.||+||-+.| .||-
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~--r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp~~~ip~PlGnp 398 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCT--RCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVPTIAIPHPLGDP 398 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcch--hHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceecccCcCCCCCCC
Confidence 345666677777 4899999997665444 4445677777778999998887 2332
Q ss_pred -----chhHHHHHHHHHHHHHHHHhhc
Q 014098 243 -----FEGRRRAIQAQEGVANLRNNVD 264 (430)
Q Consensus 243 -----fEG~~r~~~A~~gL~~L~~~vD 264 (430)
.|-..|+..-+.+|+.|..-++
T Consensus 399 ~l~~~~e~~~Rr~~v~~AL~aL~t~~~ 425 (431)
T TIGR01918 399 ALSKAEEKKLRRKRVEKALKALETEVE 425 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444577888888888876554
No 315
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.09 E-value=1.4e+02 Score=28.24 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=47.8
Q ss_pred CCCeEEEEee-C-cchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C---CCCceEE-cCCccCCCCCCCCCchHHH
Q 014098 113 NEAKIKVIGV-G-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQ-IGCDLTRGLGAGGNPSVGM 184 (430)
Q Consensus 113 ~~~kIkVIGV-G-GaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~---~a~~ki~-iG~~~t~GlGaG~dP~vG~ 184 (430)
.+.++.|.|. | |.|..++.+|.+.+ ...++++.+.+.++... + ....++. +--++ .+++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~--- 82 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG---ARVVISDIHERRLGETADELAAELGLGRVEAVVCDV-------TSEA--- 82 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccC-------CCHH---
Confidence 3468999997 6 79999999998875 45566655544443210 0 0001221 11111 1232
Q ss_pred HHHHHhHHHHHHHhcCCCEEEEEccCC
Q 014098 185 NAANESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 185 ~aA~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..++-.+++.+.+...|.||-+||..
T Consensus 83 -~~~~~~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 83 -QVDALIDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred -HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 22233444555556789999999864
No 316
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=49.88 E-value=74 Score=33.34 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=59.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||+|+|-|..|..++..+.+. |++.+++.+|..........++..+.+++.. +. ....+.+.|
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~---G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~--------~~-----~~y~d~~~l 66 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKEL---GIKTVAVHSTADRDALHVQLADEAVCIGPAP--------SK-----KSYLNIPAI 66 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHc---CCeEEEEcChhhccCCCHhHCCEEEEeCCCC--------cc-----cccCCHHHH
Confidence 5899999999999999988776 6778888665433111101246666665421 00 011233455
Q ss_pred HHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 195 ~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+.. .+.|.|+-..|.- +- .+.+++.+++.|+.+++
T Consensus 67 ~~~a~~~~id~I~p~~~~~----~e-~~~~~~~~e~~gi~~~g 104 (451)
T PRK08591 67 ISAAEITGADAIHPGYGFL----SE-NADFAEICEDSGFTFIG 104 (451)
T ss_pred HHHHHHhCCCEEEECCCcc----cc-CHHHHHHHHHCCCceEC
Confidence 5543 3688776644321 11 12567788888877654
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=49.87 E-value=60 Score=30.55 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCC-CceEE-cCCccCCCCCCCCCchHHHHH
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRLQ-IGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a-~~ki~-iG~~~t~GlGaG~dP~vG~~a 186 (430)
..+.++.|.|. |+.|..++.+|.+. |.+.+.++.+...+.... +.. ..++. +--++ .|++ .
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~-------~~~~----~ 73 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQA---GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDV-------TDHD----A 73 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccC-------CCHH----H
Confidence 34568999996 88999999999886 456677776655443210 000 00111 11011 1222 2
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.++..+++.+.+...|.||..||...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~~~ 99 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGMQF 99 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 33334555666778999999998754
No 318
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.68 E-value=35 Score=33.31 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=34.6
Q ss_pred CCCCCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEE
Q 014098 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237 (430)
Q Consensus 175 GaG~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIV 237 (430)
|.-.||..++++|+.-++ +++|+||-++ ++. | +.+.|++.|+.+|++-
T Consensus 160 g~~~D~~~a~~~a~~l~~------~G~DvI~~~~---~~~--g----~~~aa~~~g~~~IG~d 207 (258)
T cd06353 160 GSWFDPAKEKEAALALID------QGADVIYQHT---DSP--G----VIQAAEEKGVYAIGYV 207 (258)
T ss_pred cCCCCcHHHHHHHHHHHH------CCCcEEEecC---CCh--H----HHHHHHHhCCEEEeec
Confidence 455789999888865322 5999777776 222 2 5688899999999984
No 319
>PRK09224 threonine dehydratase; Reviewed
Probab=49.62 E-value=2.7e+02 Score=30.36 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHhhcCCCccEEEeeeeCC
Q 014098 325 IVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDK 365 (430)
Q Consensus 325 vLvnI~gg~dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~ide 365 (430)
-++.|.+|.++.+..+..+++. ..+.+.-...|-+.+.+
T Consensus 299 ~vv~i~sG~n~~~~~l~~~~~r--~~~~~~re~~l~v~iPe 337 (504)
T PRK09224 299 TLVAILSGANMNFDRLRYVAER--AELGEQREALLAVTIPE 337 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEeCC
Confidence 4566666678999988887765 33333345555555543
No 320
>PRK06179 short chain dehydrogenase; Provisional
Probab=49.47 E-value=1.2e+02 Score=28.67 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=48.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
.++.|.|. |+.|..++.+|.+. |.+.+++.-+...+.... ...+..+ ++ .|++- .++..+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~---g~~V~~~~r~~~~~~~~~---~~~~~~~-D~-------~d~~~----~~~~~~~ 66 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARA---GYRVFGTSRNPARAAPIP---GVELLEL-DV-------TDDAS----VQAAVDE 66 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCChhhccccC---CCeeEEe-ec-------CCHHH----HHHHHHH
Confidence 46888885 67888899999876 566777776665543211 1122221 11 23332 2333445
Q ss_pred HHHHhcCCCEEEEEccCCC
Q 014098 194 IEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGG 212 (430)
+.+.+...|+||.+||...
T Consensus 67 ~~~~~g~~d~li~~ag~~~ 85 (270)
T PRK06179 67 VIARAGRIDVLVNNAGVGL 85 (270)
T ss_pred HHHhCCCCCEEEECCCCCC
Confidence 5666678999999998754
No 321
>PRK06841 short chain dehydrogenase; Provisional
Probab=49.44 E-value=1.1e+02 Score=28.68 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=48.9
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceE-EcCCccCCCCCCCCCchHHHHHHHH
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki-~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
..+.++.|.|. |+.|..++.+|.+.+ ..++.+..+.............++ .+-.++ .+++ ..++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~----~~~~ 78 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKG---ARVALLDRSEDVAEVAAQLLGGNAKGLVCDV-------SDSQ----SVEA 78 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhhCCceEEEEecC-------CCHH----HHHH
Confidence 34568999996 889999999998864 566666655432211000001111 111111 1222 2233
Q ss_pred hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
..+++.+.+...|.|+-.||...
T Consensus 79 ~~~~~~~~~~~~d~vi~~ag~~~ 101 (255)
T PRK06841 79 AVAAVISAFGRIDILVNSAGVAL 101 (255)
T ss_pred HHHHHHHHhCCCCEEEECCCCCC
Confidence 34556666678999999998753
No 322
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.39 E-value=2.7e+02 Score=27.38 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=24.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
|||.|||. |.+|+.+++...+++ .+.-+|=-|...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEeChHh
Confidence 68999996 778999999988874 444444344433
No 323
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=49.36 E-value=1.3e+02 Score=27.52 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC-----CCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP-----VIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~-----~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..+|.|.|. |+.|..++.+|.++ |.+.+.+..+...+.... ...+..+.... + .|++- .
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-~-------~~~~~----~ 69 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD---GAKVVIYDSNEEAAEALAAELRAAGGEARVLVFD-V-------SDEAA----V 69 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCChhHHHHHHHHHHhcCCceEEEEcc-C-------CCHHH----H
Confidence 457999996 88999999999887 455677777655433210 00011111111 1 23322 2
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
....+++.+.+...|.|+.++|....
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~~~~ 95 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAGITRD 95 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 23344455556778999999987554
No 324
>PLN02650 dihydroflavonol-4-reductase
Probab=48.80 E-value=2.3e+02 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
+..+|.|.|. |..|.+++.+|++.+ .+.+++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3458999996 899999999999874 4555443
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=48.76 E-value=79 Score=31.29 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=60.9
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhccccc
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI~ 268 (430)
+..+.+++++....-++++ .|.||+|-+-.+..++....-.-..|+|+--.-|-.. .++ ..+-.
T Consensus 67 ~~~~~l~~~~~~~~Glili---sG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~------~~~-------~q~~v 130 (264)
T cd01129 67 ENLEIFRKLLEKPHGIILV---TGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI------PGI-------NQVQV 130 (264)
T ss_pred HHHHHHHHHHhcCCCEEEE---ECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC------CCc-------eEEEe
Confidence 4556677777655544444 4678999999888777665433334555433323110 000 00012
Q ss_pred CccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHh
Q 014098 269 PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQ 311 (430)
Q Consensus 269 pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~ 311 (430)
.....++|++....+-..+--++-+|+-.+...+..|++.|..
T Consensus 131 ~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t 173 (264)
T cd01129 131 NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT 173 (264)
T ss_pred CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc
Confidence 2334678988544444466778889998876555555555544
No 326
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=48.29 E-value=1e+02 Score=33.38 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=51.1
Q ss_pred HhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEec------------------cCC------
Q 014098 189 ESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATV------------------PFC------ 242 (430)
Q Consensus 189 e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTl------------------PF~------ 242 (430)
..-++|-+.| +++|.|++++.=|=.| =..-.+++...+.||+||-|.|+ ||-
T Consensus 323 ~~g~eIa~~Lk~dgVDAvILtstCgtCt--rcga~m~keiE~~GIPvV~i~~~~pI~~~vGanRiv~~~~i~~PlGnp~l 400 (431)
T TIGR01917 323 QFAKEFSKELLAAGVDAVILTSTUGTCT--RCGATMVKEIERAGIPVVHICTVTPIALTVGANRIIPAIAIPHPLGDPAL 400 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcch--hHHHHHHHHHHHcCCCEEEEeechhHHHhcCCCceecCCCCCCCCCCCCC
Confidence 3555577766 4899999998765444 44456777777789999888773 222
Q ss_pred ---chhHHHHHHHHHHHHHHHHhhc
Q 014098 243 ---FEGRRRAIQAQEGVANLRNNVD 264 (430)
Q Consensus 243 ---fEG~~r~~~A~~gL~~L~~~vD 264 (430)
.|-+.|+..-+.+|+.|..-++
T Consensus 401 ~~~~e~~~rr~~v~~AL~aL~t~~~ 425 (431)
T TIGR01917 401 DAAEEKALRRKIVEKALKALETEIE 425 (431)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444677788888888876554
No 327
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=47.84 E-value=45 Score=36.39 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
...+.++.|||.|..|..++.++... |.+.++++.|..
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e~dp~ 288 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGF---GARVVVTEIDPI 288 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCch
Confidence 34677999999999999999999765 456778887754
No 328
>PRK06523 short chain dehydrogenase; Provisional
Probab=47.71 E-value=1.8e+02 Score=27.26 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
..+.++.|.|. |+.|..++.+|.+. |.+.+++.-+.+..... ...+... ++ .|++- .++-
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~r~~~~~~~~----~~~~~~~-D~-------~~~~~----~~~~ 67 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEA---GARVVTTARSRPDDLPE----GVEFVAA-DL-------TTAEG----CAAV 67 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHC---CCEEEEEeCChhhhcCC----ceeEEec-CC-------CCHHH----HHHH
Confidence 34568999996 68899999999876 45666666554432110 1111111 11 23322 2233
Q ss_pred HHHHHHHhcCCCEEEEEccCC
Q 014098 191 KVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLG 211 (430)
.+++.+.+...|.||..||..
T Consensus 68 ~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK06523 68 ARAVLERLGGVDILVHVLGGS 88 (260)
T ss_pred HHHHHHHcCCCCEEEECCccc
Confidence 445666677899999999854
No 329
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=47.69 E-value=37 Score=38.10 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
.+|.|||.|..|..++..+.+.+. ..+.+++|.+.+.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d~~~~~~ 41 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVDRRAKSL 41 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEECChhHH
Confidence 479999999999999999988763 23567777766554
No 330
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=47.45 E-value=52 Score=35.24 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~ 150 (430)
....+|.|||+||.|+.++..|+..|+.. |..+|.|.
T Consensus 18 L~~s~VlliG~gglGsEilKNLvL~GIg~--~tIvD~~~ 54 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLPGIGS--FTIVDGSK 54 (425)
T ss_pred HhhCeEEEEcCcHHHHHHHHHHHHcCCCe--EEEECCCc
Confidence 35679999999999999999999987643 45566543
No 331
>PRK12367 short chain dehydrogenase; Provisional
Probab=47.24 E-value=75 Score=30.61 Aligned_cols=81 Identities=11% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCCCCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH-HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHH
Q 014098 108 VPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA-QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 108 ~~~~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~-q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~ 185 (430)
.+.+....++.|.|. ||.|..++.++.+. |.+.+++.-+. +.+.... ...... +- .|-
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~---G~~Vi~~~r~~~~~~~~~~-~~~~~~-~~----------~D~----- 67 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAK---GAKVIGLTHSKINNSESND-ESPNEW-IK----------WEC----- 67 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEECCchhhhhhhc-cCCCeE-EE----------eeC-----
Confidence 344555678899987 67899999999876 45666655443 2221100 000000 00 011
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCC
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
.+.+++.+.+...|.+|..||.+
T Consensus 68 ---~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 68 ---GKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred ---CCHHHHHHhcCCCCEEEECCccC
Confidence 12344556778899999999864
No 332
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=47.10 E-value=1.1e+02 Score=31.72 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=44.9
Q ss_pred chHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 180 PSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 180 P~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
|.+-.+..++-.+.++..++..|+|++..++=-|-+-..=--+++++++.|+.++
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vi 163 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVI 163 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 6677777777788888889999999988878777777777778889999988755
No 333
>PRK05866 short chain dehydrogenase; Provisional
Probab=46.96 E-value=1.3e+02 Score=29.63 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=49.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC--C-CCceE-EcCCccCCCCCCCCCchHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV--I-PENRL-QIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~--~-a~~ki-~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
...++.|.|. ||.|..++..|.++ |.+.+++.-+.+.++.... . ...++ .+--++ .|++ ..
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~---G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl-------~d~~----~v 104 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARR---GATVVAVARREDLLDAVADRITRAGGDAMAVPCDL-------SDLD----AV 104 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-------CCHH----HH
Confidence 3467999997 88899999999876 4566666655544432100 0 00011 111111 1332 23
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.+-.+++.+.+...|.||.+||.+.
T Consensus 105 ~~~~~~~~~~~g~id~li~~AG~~~ 129 (293)
T PRK05866 105 DALVADVEKRIGGVDILINNAGRSI 129 (293)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 3344555666678999999998643
No 334
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=46.76 E-value=92 Score=33.94 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=49.8
Q ss_pred eEEEEeeCcchHHHHHHHHHc-C--CCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIES-S--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~-~--~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
+|-+|||||.|-..+-+++.+ + ++|.+ +..+--.+.|.... -++.+|.. |
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD-~~~~~~t~~L~~~G----~~i~~gh~----------~------------ 61 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSD-LAESPMTQRLEALG----IEIFIGHD----------A------------ 61 (459)
T ss_pred eEEEEeeccccHHHHHHHHHhCCCceECcc-ccccHHHHHHHHCC----CeEeCCCC----------H------------
Confidence 799999999999988777665 2 33433 12222334454432 25555542 1
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
+-+.+.|.|++.+.+--+ =|.| ..|++.+++++
T Consensus 62 ---~ni~~~~~VV~s~Ai~~~-----NpEi-~~A~e~~ipi~ 94 (459)
T COG0773 62 ---ENILDADVVVVSNAIKED-----NPEI-VAALERGIPVI 94 (459)
T ss_pred ---HHcCCCceEEEecccCCC-----CHHH-HHHHHcCCCeE
Confidence 246677777777777433 3666 45677777654
No 335
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.75 E-value=30 Score=34.49 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=32.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|..|..++..+... |.+.+.+|.+.+.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHHH
Confidence 3899999999999999988776 6788889988888764
No 336
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=46.44 E-value=1e+02 Score=30.26 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
..+.+.+.++++|+|++...+.++......-.+.+.||+.|++++-
T Consensus 116 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 161 (309)
T PRK13508 116 FLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPVVL 161 (309)
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445677889999998875554443333344566788888876543
No 337
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.32 E-value=31 Score=34.31 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=31.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|-.|+.++..+.+. |.+.+.+|.+.+.++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d~~~~~~~~ 42 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLIDVMEGALER 42 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHH
Confidence 4799999999999999999876 4577788888776654
No 338
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=46.29 E-value=1.4e+02 Score=32.56 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=26.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+||+|||-|+..--++..+.+. ..+.+++++-.
T Consensus 1 mkVLviG~Ggrehal~~~l~~s-~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKS-TKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhC-CCCCEEEEEEC
Confidence 6899999999999999998665 34677777644
No 339
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=46.27 E-value=1.5e+02 Score=36.37 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCCCCchHHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCCCCC-CcHHHHHHHHHHcC--CcEEEEEe-----ccC--
Q 014098 174 LGAGGNPSVGMNAANESKVAIEEAIS--GADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIAT-----VPF-- 241 (430)
Q Consensus 174 lGaG~dP~vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGGTGT-GaaPvIA~~AKe~g--iltVaIVT-----lPF-- 241 (430)
+|.+..+. --++..+++.+.++ +-|.+|++.|= || -.|-.+++.+++.| +.+|+|-- +|.
T Consensus 172 LGS~R~kl----~~ee~~~~~le~lkkl~Id~LVvIGGD----gS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~ 243 (1328)
T PTZ00468 172 ICSGRHKI----ETEEQMRASLEICEKLKLHGLVVIGGD----DSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEV 243 (1328)
T ss_pred ccCcCCCC----CCHHHHHHHHHHHHHhCCCEEEEECCc----hHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCc
Confidence 56666552 13456677777775 78999997433 34 46778888888887 77777632 121
Q ss_pred C--chhH-HHHHHHHHHHHHHHHhhcc
Q 014098 242 C--FEGR-RRAIQAQEGVANLRNNVDT 265 (430)
Q Consensus 242 ~--fEG~-~r~~~A~~gL~~L~~~vD~ 265 (430)
. .-|. -..+.+.+.+..|...+.+
T Consensus 244 tD~S~GFdTA~k~iae~I~nl~~~A~S 270 (1328)
T PTZ00468 244 IETSFGYDTAVKTYSEQIGSIMDAIKT 270 (1328)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 0 1122 2334555677777765543
No 340
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=46.23 E-value=50 Score=34.78 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=52.7
Q ss_pred CeEEEEee-CcchHHHHHHHH-HcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMI-ESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~-~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
++|.|||. |-.|..+++.|. +...+-.+++.+-+...+ ..++.++.+ . ...++.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~--------g~~~~f~~~----------~-----~~v~~~~ 57 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLG--------QAAPSFGGT----------T-----GTLQDAF 57 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhC--------CCcCCCCCC----------c-----ceEEcCc
Confidence 37899998 888999999998 445655566665554322 111111110 0 0001111
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCc
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gil 232 (430)
.. +.+.+.|++|.++ |+..+-.++..+++.|..
T Consensus 58 ~~-~~~~~vDivffa~------g~~~s~~~~p~~~~aG~~ 90 (366)
T TIGR01745 58 DI-DALKALDIIITCQ------GGDYTNEIYPKLRESGWQ 90 (366)
T ss_pred cc-ccccCCCEEEEcC------CHHHHHHHHHHHHhCCCC
Confidence 11 2567899999987 445788888888888843
No 341
>PLN02253 xanthoxin dehydrogenase
Probab=46.10 E-value=1.2e+02 Score=28.97 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCceEE-cCCccCCCCCCCCCchHHHHHH
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..+.++.|.|. |+.|..++.+|.+. |.+.+.++-+.+.+.... .....++. +--++ .|++ ..
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~d~~----~~ 81 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKH---GAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDV-------TVED----DV 81 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeec-------CCHH----HH
Confidence 44567888886 57899999999886 456666665444332110 00011111 11111 1232 23
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
++..+.+.+.+...|.||-.||..+
T Consensus 82 ~~~~~~~~~~~g~id~li~~Ag~~~ 106 (280)
T PLN02253 82 SRAVDFTVDKFGTLDIMVNNAGLTG 106 (280)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCC
Confidence 3334456666678999999998754
No 342
>PLN03139 formate dehydrogenase; Provisional
Probab=45.97 E-value=22 Score=37.55 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
....+.+|.|||.|..|..++.+|... |.+.++.|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHC---CCEEEEECC
Confidence 356778999999999999999999765 566677664
No 343
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=45.95 E-value=1.1e+02 Score=30.01 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
.+.+.+.++++|+|++...+..+........+++.||+.|++++.=
T Consensus 117 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 162 (309)
T TIGR01231 117 LKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLD 162 (309)
T ss_pred HHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEE
Confidence 3455667899999988766544333345556777888888876543
No 344
>PRK13243 glyoxylate reductase; Reviewed
Probab=45.91 E-value=26 Score=35.93 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
...+.+|.|||.|..|..++.++...+ .+.+++|..
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~~ 182 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFG---MRILYYSRT 182 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 567889999999999999999997664 466666653
No 345
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.91 E-value=1.9e+02 Score=26.62 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcC----C-CCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS----P-VIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s----~-~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..+|.|.| -|+.|..++.+|.++ |.+.+++..+...+... . ...+..+..+. + .|++- .
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l-------~~~~~----~ 70 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD---GAEVIVVDICGDDAAATAELVEAAGGKARARQVD-V-------RDRAA----L 70 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC-C-------CCHHH----H
Confidence 35789999 578899999999887 45677777664333211 0 00011111111 1 23322 2
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
++..+++...+...|.||.++|+.+.
T Consensus 71 ~~~~~~~~~~~~~~d~vi~~ag~~~~ 96 (251)
T PRK12826 71 KAAVAAGVEDFGRLDILVANAGIFPL 96 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 33344555556789999999987654
No 346
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=45.85 E-value=33 Score=34.25 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=29.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
++|.|||+|..|..++.+|.+.+ .+.++.|-+.+.+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr~~~~~~ 37 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDVNQEAVD 37 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHH
Confidence 47999999999999999998864 56667787766544
No 347
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=45.79 E-value=4.2e+02 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCCCCCCCCCeEEEEeeC-cchHHHHHHHHHcC
Q 014098 106 SSVPNNNNEAKIKVIGVG-GGGSNAVNRMIESS 137 (430)
Q Consensus 106 ~~~~~~~~~~kIkVIGVG-GaG~NiV~~m~~~~ 137 (430)
+++........|.|+|.+ +.|..+++.|++.+
T Consensus 71 ~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 71 PPNNNSKKPTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred cCCCCCCCCCeEEEecCCCchhHHHHHHHHHCC
Confidence 445555667789999975 56788899999887
No 348
>PLN02494 adenosylhomocysteinase
Probab=45.76 E-value=42 Score=36.58 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q 151 (430)
.+.++.|+|.|..|..++.++... |+..++++.|..
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~---Ga~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAA---GARVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCch
Confidence 457899999999999999998655 557888887764
No 349
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=45.71 E-value=28 Score=35.42 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.....+|.|||.|..|..++.++... |.+.+++|...+....... ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~~~~~~~~~~~-----------------------------~~~ 180 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW---GFPLRCWSRSRKSWPGVQS-----------------------------FAG 180 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCCCCCCCcee-----------------------------ecc
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGT 214 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGT 214 (430)
.+++.++++++|+|+++.-+.-.|
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt~~T 204 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNTPET 204 (312)
T ss_pred cccHHHHHhcCCEEEECCCCCHHH
No 350
>PRK06194 hypothetical protein; Provisional
Probab=45.65 E-value=1.1e+02 Score=29.38 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=48.5
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CC-CCceEE-cCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~-a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++.|.|. |+.|..++.+|.+. |.+.++++.+...+.... .. ...++. +--++ .|++ ..+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~d~~----~~~ 71 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL---GMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDV-------SDAA----QVE 71 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCC-------CCHH----HHH
Confidence 357888885 78899999999886 456666666544333210 00 011221 11111 2232 122
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
+..+.+.+.....|+||-.||....
T Consensus 72 ~~~~~~~~~~g~id~vi~~Ag~~~~ 96 (287)
T PRK06194 72 ALADAALERFGAVHLLFNNAGVGAG 96 (287)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCC
Confidence 2334445555678999999998654
No 351
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=45.62 E-value=97 Score=29.15 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..++.|.|. |+.|..++.+|.++ |.+.+.++.|...+......-..++. +--++ .|++ ..++..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~~~~ 71 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE---GARVVIADIKPARARLAALEIGPAAIAVSLDV-------TRQD----SIDRIV 71 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHHhCCceEEEEccC-------CCHH----HHHHHH
Confidence 347899986 77899999999887 56777777776655432100011111 11111 1232 233345
Q ss_pred HHHHHHhcCCCEEEEEccCC
Q 014098 192 VAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLG 211 (430)
+++.+.+...|.|+-+||..
T Consensus 72 ~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 72 AAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 55666677899999988764
No 352
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=45.53 E-value=43 Score=34.26 Aligned_cols=104 Identities=24% Similarity=0.328 Sum_probs=67.8
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCC--CCC----C-cHHHHHHHHHHcCCcEEE-EEeccCCchhHHHHHHHHHHHHHH
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGG--TGT----G-AAPVIAGIAKSMGILTVG-IATVPFCFEGRRRAIQAQEGVANL 259 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGG--TGT----G-aaPvIA~~AKe~giltVa-IVTlPF~fEG~~r~~~A~~gL~~L 259 (430)
+.+..++.+..+.+|++++-.|-=.- ..+ | ..+.-.+.+++.| .|| |+..+|.-+|+
T Consensus 189 e~~i~~vl~~~~~~Dial~GIG~~~~~~~s~~~~~g~l~~~~~~~L~~~g--AVGdi~g~f~D~~G~------------- 253 (318)
T PRK15418 189 ENSVRDVMLAAQAADVAIVGIGAVNQKDDATILRSGYISQGEQLMIGRKG--AVGDILGYFFDADGE------------- 253 (318)
T ss_pred ChHHHHHHHHHHhCCEEEEEecCCCCCCCCceeecCCCCHHHHHHHHHCC--ceEEEeeeEECCCCC-------------
Confidence 34566677777899988886665332 111 3 4555555666666 456 77789999995
Q ss_pred HHhh-cccccCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCCc
Q 014098 260 RNNV-DTLIIPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLD 316 (430)
Q Consensus 260 ~~~v-D~lI~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd 316 (430)
.+ |+-+..-.|.+++++++.+= -.+ +.+.|..++ +|+..||..-+++
T Consensus 254 --~v~~~~~~~r~igi~le~Lk~ip-----~~I--~vA~G~~K~-~Ai~aALrgg~i~ 301 (318)
T PRK15418 254 --LVPDIKIHNELIGLPLSSLKTIP-----TVI--GVAGGEEKA-EAIIAALKGGYIN 301 (318)
T ss_pred --CcCCcccccceecCCHHHHcCCC-----CEE--EEecCHHHH-HHHHHHHhcCCCC
Confidence 34 33334446889999998762 244 445566555 5999999988875
No 353
>PLN02686 cinnamoyl-CoA reductase
Probab=45.51 E-value=1.2e+02 Score=31.10 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 014098 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 111 ~~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
.....+|.|.|. |..|..++.+|++.+ .+.+++.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~ 84 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAV 84 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEe
Confidence 344678999997 889999999999874 5555443
No 354
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=45.51 E-value=3.5e+02 Score=27.56 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..++|.|+=-|-+|-..+..++++ +++-+|+.+=-+ . +.--|. ..++.-++.+.+-.+
T Consensus 4 ~~~~IgvFDSGVGGLsVlrei~~~-LP~e~~iY~~D~-a-----------~~PYG~---------ks~e~I~~~~~~i~~ 61 (269)
T COG0796 4 PQPPIGVFDSGVGGLSVLREIRRQ-LPDEDIIYVGDT-A-----------RFPYGE---------KSEEEIRERTLEIVD 61 (269)
T ss_pred cCCeEEEEECCCCcHHHHHHHHHH-CCCCcEEEEecC-C-----------CCCCCC---------CCHHHHHHHHHHHHH
Confidence 356899999999999999998765 455555443111 1 111122 233333333333333
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHH-cCCcEEEEEeccCC
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS-MGILTVGIATVPFC 242 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe-~giltVaIVTlPF~ 242 (430)
.+.+ ++.+|++|+|.. |+-+..+.+|+ ..+++|||+ |--
T Consensus 62 ~l~~--~~ik~lVIACNT-------ASa~al~~LR~~~~iPVvGvi--Pai 101 (269)
T COG0796 62 FLLE--RGIKALVIACNT-------ASAVALEDLREKFDIPVVGVI--PAI 101 (269)
T ss_pred HHHH--cCCCEEEEecch-------HHHHHHHHHHHhCCCCEEEec--cch
Confidence 3322 359999999864 44444455554 679999997 753
No 355
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=45.37 E-value=40 Score=36.30 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=31.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
....||.+.|.|-||..+++.|...++..-++|.+|+
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~ 233 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDR 233 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEec
Confidence 4467999999999999999999999877656777765
No 356
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=45.36 E-value=2.2e+02 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
.+.+.+.++++|+|++..-.-++........+++.+|+.+++++
T Consensus 125 ~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~ 168 (304)
T cd01172 125 IERIAERLPEADVVILSDYGKGVLTPRVIEALIAAARELGIPVL 168 (304)
T ss_pred HHHHHHhhccCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEE
Confidence 34556678999999885322122222345556677888888754
No 357
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.22 E-value=32 Score=34.02 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=32.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|-.|..++..+... |.+.+.+|.+.+.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~ 41 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKN 41 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 4799999999999999999876 4578888988887753
No 358
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=45.06 E-value=98 Score=29.09 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred eEEEEeeC-cchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C---CCCceEE-cCCccCCCCCCCCCchHHHHHHH
Q 014098 116 KIKVIGVG-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQ-IGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 116 kIkVIGVG-GaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~---~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
+|.|.|.+ +.|..++.+|.+. |.+++.++.+...+.... . ....++. +--++ .|++--+
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~~i~---- 69 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEE---GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADA-------TSEQSVL---- 69 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccC-------CCHHHHH----
Confidence 58888874 5699999999876 567777777655443211 0 0001111 11111 1333222
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
...+++.+.+...|.||-+||....
T Consensus 70 ~~~~~~~~~~~~id~vv~~ag~~~~ 94 (259)
T PRK12384 70 ALSRGVDEIFGRVDLLVYNAGIAKA 94 (259)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCC
Confidence 2344566666789999999987543
No 359
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=45.03 E-value=1e+02 Score=30.78 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=63.1
Q ss_pred chHHHHHHHHhHHHHHHHhcCCCEEEEEccCC-CCCCCCcHHHHHH--------------------------HHHHcCCc
Q 014098 180 PSVGMNAANESKVAIEEAISGADMIFVTAGMG-GGTGTGAAPVIAG--------------------------IAKSMGIL 232 (430)
Q Consensus 180 P~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLG-GGTGTGaaPvIA~--------------------------~AKe~gil 232 (430)
|+.+.--.++-...++...++++.-||++.|+ |+-++...-++.. .+.+.|++
T Consensus 50 pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agip 129 (254)
T cd06557 50 DSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGIP 129 (254)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34333334555555666667777776777776 5555433333222 22334666
Q ss_pred EEE-EEeccCC--chh-HH----HHHHHHHHHHHHHHh----hcccccCccccccHHHHHHHHhhcCeeEEEEEEecC
Q 014098 233 TVG-IATVPFC--FEG-RR----RAIQAQEGVANLRNN----VDTLIIPGLVNVDFADVRAIMKDAGSSLMGIGTATG 298 (430)
Q Consensus 233 tVa-IVTlPF~--fEG-~~----r~~~A~~gL~~L~~~----vD~lI~pglINvDfaDvk~Il~~~G~A~mGiG~a~G 298 (430)
+++ |-.+|-. +.| .+ .-..|++.|++.+.+ +|.++.+++- -...+.|-+.-..-+||||.+.+
T Consensus 130 V~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~---~~~~~~i~~~v~iP~igiGaG~~ 204 (254)
T cd06557 130 VMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP---AELAKEITEALSIPTIGIGAGPD 204 (254)
T ss_pred eeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC---HHHHHHHHHhCCCCEEEeccCCC
Confidence 654 3234442 222 11 112356666666666 4666666653 24667777777778888887754
No 360
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=44.95 E-value=34 Score=34.11 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=30.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
++|.|||+|-.|..++.+|.+.+ .+.++.|-+.+...
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr~~~~~~ 37 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDRNPEAVE 37 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEECCHHHHH
Confidence 47999999999999999998864 56777888766554
No 361
>PRK06180 short chain dehydrogenase; Provisional
Probab=44.84 E-value=1.3e+02 Score=28.86 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=48.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
.++.|.|. |+.|..++.+|.+. |.+.+++..+...+.........++. +--++ .|++ ...+..+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~---G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-------~d~~----~~~~~~~ 70 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAA---GHRVVGTVRSEAARADFEALHPDRALARLLDV-------TDFD----AIDAVVA 70 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhC---cCEEEEEeCCHHHHHHHHhhcCCCeeEEEccC-------CCHH----HHHHHHH
Confidence 46899997 67889999999876 56677777766655432100001111 11011 1222 2233344
Q ss_pred HHHHHhcCCCEEEEEccCC
Q 014098 193 AIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLG 211 (430)
.+.+.+...|.||-+||..
T Consensus 71 ~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 71 DAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHhCCCCEEEECCCcc
Confidence 5556667899999999874
No 362
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=44.79 E-value=36 Score=39.11 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
....||.+.|.|.+|..+++.|...++..-++|.+|+.
T Consensus 183 ~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 183 IEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred hhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 44579999999999999999999876653356777754
No 363
>PRK06436 glycerate dehydrogenase; Provisional
Probab=44.62 E-value=36 Score=34.57 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=45.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
...+.+|.|||.|..|..++.++... |.+.+++|..... + |+ .. .
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r~~~~--------~-------------~~--~~---------~ 163 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF---GMNIYAYTRSYVN--------D-------------GI--SS---------I 163 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC---CCEEEEECCCCcc--------c-------------Cc--cc---------c
Confidence 56778999999999999999876543 5677777743110 0 00 00 0
Q ss_pred HHHHHHHhcCCCEEEEEccCCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
...+.+.++.+|+|+++.-+.-.
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~ 186 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDE 186 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCch
Confidence 12356778889999988877443
No 364
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=44.46 E-value=89 Score=32.82 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=76.4
Q ss_pred HHHHhcCC-CEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHH---HHHHhhcccc--
Q 014098 194 IEEAISGA-DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVA---NLRNNVDTLI-- 267 (430)
Q Consensus 194 I~~~L~ga-D~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~---~L~~~vD~lI-- 267 (430)
|.+.+.+. |.||+-.|-||-- +|++-.+..+. -.+.+|+| -|...-.-.+...+..-.. .....+|.+-
T Consensus 168 ileq~~~~~d~v~vpvGGGGLi-sGia~~~k~~~--p~~~vIGV--Ep~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~ 242 (347)
T COG1171 168 ILEQLPDLPDAVFVPVGGGGLI-SGIATALKALS--PEIKVIGV--EPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK 242 (347)
T ss_pred HHHhccccCCEEEEecCccHHH-HHHHHHHHHhC--CCCeEEEE--eeCCChHHHHHHHcCCceeecCCCCccccccccC
Confidence 45555565 9999999976655 56655554332 24888888 5766554443333310000 1112233332
Q ss_pred -------------cCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCCcCCccccCce-EEEEEeCC
Q 014098 268 -------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGI-VWNITGGT 333 (430)
Q Consensus 268 -------------~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd~~i~~A~gv-LvnI~gg~ 333 (430)
...+|-+|=.++...|...-.-.--+-+..|- +.-.||..-..+. .++- ++.|.+|-
T Consensus 243 ~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGA-----lalAal~~~~~~~----~~g~~v~~ilSGg 313 (347)
T COG1171 243 RPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGA-----LALAALLAGKIEP----LQGKTVVVILSGG 313 (347)
T ss_pred CCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHH-----HHHHHHHhhhhhh----cCCCeEEEEecCC
Confidence 22456677777777776643322233333331 1222222111111 2332 66666666
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccEEEeeee
Q 014098 334 DLTLFEVNTAAEVIYDLVDPSANLIFGAVI 363 (430)
Q Consensus 334 dl~L~Ev~~a~~~I~~~~~~~a~Ii~G~~i 363 (430)
++.+.-+.++.+. ...+.....+|=..+
T Consensus 314 N~d~~~~~~v~~~--~~~~~~~~~~~~~~~ 341 (347)
T COG1171 314 NIDFERLAEVLER--ALLGEGRKAYFAVTF 341 (347)
T ss_pred CCCHHHHHHHHhc--ccccCCCceEEEEec
Confidence 7888777776654 222333345554433
No 365
>PRK10436 hypothetical protein; Provisional
Probab=44.42 E-value=94 Score=33.66 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=67.0
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEec--cCCchhHHHHHHHHHHHHHHHHhhccc
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATV--PFCFEGRRRAIQAQEGVANLRNNVDTL 266 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTl--PF~fEG~~r~~~A~~gL~~L~~~vD~l 266 (430)
+..+.+++++....-++++ .|.||||-+-.+..++++..-...-|+|+ |-++.= .++.++.
T Consensus 205 ~~~~~l~~~~~~~~GliLv---tGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--------~gi~Q~~------ 267 (462)
T PRK10436 205 AQLAQFRQALQQPQGLILV---TGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--------AGINQTQ------ 267 (462)
T ss_pred HHHHHHHHHHHhcCCeEEE---ECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--------CCcceEe------
Confidence 4566778888766655555 35689999999887777765444556665 333210 0111000
Q ss_pred ccCccccccHHHH-HHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCC
Q 014098 267 IIPGLVNVDFADV-RAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPL 314 (430)
Q Consensus 267 I~pglINvDfaDv-k~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPL 314 (430)
+..-..++|++. +++|+ ..--+|-+|+-.+..-|..|++.|+.-.|
T Consensus 268 -v~~~~g~~f~~~lr~~LR-~dPDvI~vGEIRD~eta~~al~AA~TGHl 314 (462)
T PRK10436 268 -IHPKAGLTFQRVLRALLR-QDPDVIMVGEIRDGETAEIAIKAAQTGHL 314 (462)
T ss_pred -eCCccCcCHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHHHHcCCc
Confidence 112245789885 66665 45568889998887778888888876443
No 366
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.41 E-value=1.5e+02 Score=27.39 Aligned_cols=83 Identities=11% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC---CCCceE-EcCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV---IPENRL-QIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~---~a~~ki-~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++.|+|. |+.|..++.++.+. |...+.++.+...+..... ....++ .+--++ .+++ ..+
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~---G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~ 70 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK---GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANV-------TDEE----DVE 70 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-------CCHH----HHH
Confidence 457999998 99999999999886 4567777777654432100 000011 111111 1222 233
Q ss_pred HhHHHHHHHhcCCCEEEEEccC
Q 014098 189 ESKVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGL 210 (430)
+..+.+.+.+...|.||-.||.
T Consensus 71 ~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 71 ATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 3444455555678999998874
No 367
>PRK06949 short chain dehydrogenase; Provisional
Probab=44.26 E-value=1.1e+02 Score=28.50 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=48.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC-----CCCCceEEcCCccCCCCCCCCCchHHHH
Q 014098 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP-----VIPENRLQIGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 112 ~~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~-----~~a~~ki~iG~~~t~GlGaG~dP~vG~~ 185 (430)
....+|.|.|. |+.|..++.++.+. |.+.+++..+.+.++... ......+..+ ++ .+++-
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~---G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-D~-------~~~~~--- 72 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQA---GAKVVLASRRVERLKELRAEIEAEGGAAHVVSL-DV-------TDYQS--- 72 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEe-cC-------CCHHH---
Confidence 44578999996 88999999999876 456677766555443210 0001111111 11 12322
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccC
Q 014098 186 AANESKVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGL 210 (430)
.++..+++.+.....|.||-+||.
T Consensus 73 -~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 73 -IKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred -HHHHHHHHHHhcCCCCEEEECCCC
Confidence 223334455566789999999875
No 368
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=43.96 E-value=35 Score=35.61 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHh
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.....+|.|||.|..|..++.+|... |++.++.|...++...... .|+ .
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~---G~~ViV~~r~~~s~~~A~~---------------~G~--~----------- 61 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDS---GVEVVVGVRPGKSFEVAKA---------------DGF--E----------- 61 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHC---cCEEEEEECcchhhHHHHH---------------cCC--E-----------
Confidence 34567899999999999999999876 5677777643222111000 011 0
Q ss_pred HHHHHHHhcCCCEEEEEccC
Q 014098 191 KVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGL 210 (430)
...+.++++.+|+|++..-.
T Consensus 62 v~sl~Eaak~ADVV~llLPd 81 (335)
T PRK13403 62 VMSVSEAVRTAQVVQMLLPD 81 (335)
T ss_pred ECCHHHHHhcCCEEEEeCCC
Confidence 11467888899999998775
No 369
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.58 E-value=1.9e+02 Score=24.77 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=24.2
Q ss_pred CEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 202 DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 202 D~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
|++|++. ..|-| --.-..++.||+.|+++|+|...|-+
T Consensus 49 dl~I~iS-~SG~t--~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 49 SVVILAS-HSGNT--KETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred cEEEEEe-CCCCC--hHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 6666654 33332 34455567889999999999655443
No 370
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=43.53 E-value=53 Score=33.34 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=27.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
||.|||-|+.|..++..+.+. |+++++++.+..+
T Consensus 1 kililG~g~~~~~l~~aa~~~---G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL---GVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC
Confidence 689999999999998887665 6788888876543
No 371
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=43.52 E-value=1.2e+02 Score=28.69 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=52.7
Q ss_pred EEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHH
Q 014098 117 IKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIE 195 (430)
Q Consensus 117 IkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~ 195 (430)
|.|.| .|..|.+++..|.+. +.+.++++-+........ ...+. ...+ +...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~-----~~~~~------------~~~~--------~~~~ 52 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD---GHEVTILTRSPPAGANTK-----WEGYK------------PWAP--------LAES 52 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc---CCEEEEEeCCCCCCCccc-----ceeee------------cccc--------cchh
Confidence 45676 488999999999886 567777776654322110 00000 0000 2234
Q ss_pred HHhcCCCEEEEEccCCCCCC--------------CCcHHHHHHHHHHcCC
Q 014098 196 EAISGADMIFVTAGMGGGTG--------------TGAAPVIAGIAKSMGI 231 (430)
Q Consensus 196 ~~L~gaD~VfI~AGLGGGTG--------------TGaaPvIA~~AKe~gi 231 (430)
+.+.++|.||-+|+.-...+ ...+..+++.+++.++
T Consensus 53 ~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 53 EALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred hhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 56789999999998643222 2335667788888875
No 372
>PRK12862 malic enzyme; Reviewed
Probab=43.47 E-value=51 Score=37.93 Aligned_cols=37 Identities=11% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
...||.++|.|.+|..+++.|...++..-++|.+|+.
T Consensus 192 ~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 192 EDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred hhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 4579999999999999999998876643357777754
No 373
>PLN00198 anthocyanidin reductase; Provisional
Probab=43.46 E-value=1e+02 Score=30.62 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=45.0
Q ss_pred CCCCeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhh------hcCCCCCCceEEcCCccCCCCCCCCCchHHH
Q 014098 112 NNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM------KVSPVIPENRLQIGCDLTRGLGAGGNPSVGM 184 (430)
Q Consensus 112 ~~~~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L------~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~ 184 (430)
..+.+|.|.| .|..|..++.+|++.+ .+.+++..|...+ ....-...-.+..+. +
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-l-------------- 68 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG---YAVNTTVRDPENQKKIAHLRALQELGDLKIFGAD-L-------------- 68 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcC-C--------------
Confidence 3456899999 6778999999999874 4554443332211 111000011111221 1
Q ss_pred HHHHHhHHHHHHHhcCCCEEEEEccCC
Q 014098 185 NAANESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 185 ~aA~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
.+.+.+.+.++++|.||-+|+..
T Consensus 69 ----~d~~~~~~~~~~~d~vih~A~~~ 91 (338)
T PLN00198 69 ----TDEESFEAPIAGCDLVFHVATPV 91 (338)
T ss_pred ----CChHHHHHHHhcCCEEEEeCCCC
Confidence 12345666778899999999864
No 374
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=43.15 E-value=98 Score=34.55 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEE------eCcHHhhh---------------------cCC--C-CCC
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV------NTDAQAMK---------------------VSP--V-IPE 161 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iai------NTD~q~L~---------------------~s~--~-~a~ 161 (430)
....|..++|.|.-|||++..|+.-|++.+.|+-- |-=.|.|- ... + ..-
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG 417 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATG 417 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccccc
Confidence 45688999999999999999999888777665321 11223322 110 0 001
Q ss_pred ceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHH
Q 014098 162 NRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228 (430)
Q Consensus 162 ~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe 228 (430)
.++.|..- |+-.+ +...+.++.+.+.+++.+++-|+||+..--=. +==.|.+...+++
T Consensus 418 ~~lsIPMp---GH~I~---e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRE---SRWLPtll~a~~~ 475 (669)
T KOG2337|consen 418 YVLSIPMP---GHPIG---ESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRE---SRWLPTLLAAAKN 475 (669)
T ss_pred eEEeccCC---CCccc---hhhHHHHHHHHHHHHHHHhhcceEEEEeccch---hhhhHHHHHhhhc
Confidence 23333321 22111 22446778899999999999999999864322 2346777655544
No 375
>PRK05993 short chain dehydrogenase; Provisional
Probab=42.98 E-value=3.1e+02 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=28.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
.++.|.|. |+.|..++.+|.+. |.+.+++.-+...+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~---G~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD---GWRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHH
Confidence 46889998 88999999999876 567777776665554
No 376
>PRK07074 short chain dehydrogenase; Provisional
Probab=42.82 E-value=1.3e+02 Score=28.10 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=48.2
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC-CCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
.++.|.|. |+.|..++.+|.+. |.+++.++.+...++.... ....++. +--+. .|++- .....
T Consensus 3 k~ilItGat~~iG~~la~~L~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~~----~~~~~ 68 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA---GDRVLALDIDAAALAAFADALGDARFVPVACDL-------TDAAS----LAAAL 68 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhcCCceEEEEecC-------CCHHH----HHHHH
Confidence 36889987 78999999999886 4567777776655432100 0011221 11111 23322 22233
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
+++.+.+...|.||.++|..+
T Consensus 69 ~~~~~~~~~~d~vi~~ag~~~ 89 (257)
T PRK07074 69 ANAAAERGPVDVLVANAGAAR 89 (257)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 444555567899999998754
No 377
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=42.69 E-value=1.5e+02 Score=28.05 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..++.|.|. ||.|..++.+|.+. |.+.+.++-+.+.++........+++ +-.++ .|+ +...+..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 70 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE---GARVAVLDKSAAGLQELEAAHGDAVVGVEGDV-------RSL----DDHKEAV 70 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHhhcCCceEEEEecc-------CCH----HHHHHHH
Confidence 457888887 56799999999886 45666666655444322100011111 11111 122 1223334
Q ss_pred HHHHHHhcCCCEEEEEccCC
Q 014098 192 VAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLG 211 (430)
+++.+.+...|.+|-.||+.
T Consensus 71 ~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 71 ARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 45556667899999999874
No 378
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.54 E-value=2.2e+02 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
.+||.|||.|-.|+-++..|.+.+ .+..|..|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~ 38 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS 38 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence 478999999999999999998876 35555543
No 379
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=42.51 E-value=1.7e+02 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
..+++.+.++.+|++++.. .........+++.+|+.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~ 154 (293)
T TIGR02152 114 DIDAAEALIAESDIVLLQL----EIPLETVLEAAKIAKKHGVKVI 154 (293)
T ss_pred HHHHHHhhhccCCEEEEec----CCCHHHHHHHHHHHHHcCCEEE
Confidence 3444556788999988752 2233445567788888887644
No 380
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=42.44 E-value=1.3e+02 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=23.7
Q ss_pred HhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 197 AISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 197 ~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.++++|++|+++ |.+++--++..+.+.|..+|-
T Consensus 65 ~~~~~Divf~a~------~~~~s~~~~~~~~~~G~~VID 97 (347)
T PRK06728 65 SFEGVDIAFFSA------GGEVSRQFVNQAVSSGAIVID 97 (347)
T ss_pred HhcCCCEEEECC------ChHHHHHHHHHHHHCCCEEEE
Confidence 347899999986 456777777777777766554
No 381
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=42.40 E-value=79 Score=32.33 Aligned_cols=57 Identities=26% Similarity=0.539 Sum_probs=40.5
Q ss_pred CCCCCchHHHHHHHHhHHHHH-------------HH----hc-----------------C--CCEEEEEccCCCCCCCCc
Q 014098 175 GAGGNPSVGMNAANESKVAIE-------------EA----IS-----------------G--ADMIFVTAGMGGGTGTGA 218 (430)
Q Consensus 175 GaG~dP~vG~~aA~e~~e~I~-------------~~----L~-----------------g--aD~VfI~AGLGGGTGTGa 218 (430)
-+|-||++++..|.+-+++++ +. ++ . --.++++ ||.+|.|-
T Consensus 26 a~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILI---GGasGVGk 102 (299)
T COG2074 26 AAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILI---GGASGVGK 102 (299)
T ss_pred hcccChhHHHHHHHHHHHHHHhCCCeEeeHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCCeEEEe---cCCCCCCh
Confidence 377899999988876555432 21 11 1 1244544 99999999
Q ss_pred HHHHHHHHHHcCCcEE
Q 014098 219 APVIAGIAKSMGILTV 234 (430)
Q Consensus 219 aPvIA~~AKe~giltV 234 (430)
+-+-.++|+++||..+
T Consensus 103 StIA~ElA~rLgI~~v 118 (299)
T COG2074 103 STIAGELARRLGIRSV 118 (299)
T ss_pred hHHHHHHHHHcCCcee
Confidence 9999999999998754
No 382
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=42.40 E-value=45 Score=27.73 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=60.5
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHHH
Q 014098 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEE 196 (430)
Q Consensus 117 IkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~~ 196 (430)
|.|+|.|..|-.+++.|.+. +.+++.++.|.+....... ....+..|. ..+++.=+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d~~~~~~~~~-~~~~~i~gd--------~~~~~~l~----------~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRDPERVEELRE-EGVEVIYGD--------ATDPEVLE----------RA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESSHHHHHHHHH-TTSEEEES---------TTSHHHHH----------HT
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECCcHHHHHHHh-ccccccccc--------chhhhHHh----------hc
Confidence 57999999999999999884 4789999999876554221 122344443 22332221 22
Q ss_pred HhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcC--CcEEEEE
Q 014098 197 AISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIA 237 (430)
Q Consensus 197 ~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~g--iltVaIV 237 (430)
-++.++.|+++.+- --..-.++..+|+++ +.+++.+
T Consensus 59 ~i~~a~~vv~~~~~-----d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 59 GIEKADAVVILTDD-----DEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp TGGCESEEEEESSS-----HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CccccCEEEEccCC-----HHHHHHHHHHHHHHCCCCeEEEEE
Confidence 56789999998762 345567778889853 4556554
No 383
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=42.34 E-value=93 Score=34.33 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=67.5
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhccccc
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI~ 268 (430)
+..+.+++++....-++++ .|.||||-+..+..+++...-...-|+|+=-.-|-.. .++ ..+-.
T Consensus 303 ~~~~~l~~~~~~~~Glilv---~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~------~~~-------~q~~v 366 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLV---TGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL------PGI-------NQVNV 366 (564)
T ss_pred HHHHHHHHHHHhcCCeEEE---ECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC------CCc-------eEEEe
Confidence 4566788888776666665 4678999999998888877544455666422222110 001 00112
Q ss_pred CccccccHHHH-HHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCC
Q 014098 269 PGLVNVDFADV-RAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPL 314 (430)
Q Consensus 269 pglINvDfaDv-k~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPL 314 (430)
..-...+|++. +++|+ ..--+|-+|+-++..-+..|++.|+.-.+
T Consensus 367 ~~~~g~~~~~~l~~~LR-~dPDvI~vGEiRd~eta~~a~~aa~tGHl 412 (564)
T TIGR02538 367 NPKIGLTFAAALRSFLR-QDPDIIMVGEIRDLETAEIAIKAAQTGHL 412 (564)
T ss_pred ccccCCCHHHHHHHHhc-cCCCEEEeCCCCCHHHHHHHHHHHHcCCc
Confidence 22345788885 55554 55568889998887777778888776444
No 384
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=42.30 E-value=50 Score=35.28 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+.++.|+|.|..|.-++..+... |+..++++.|...+..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~---Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ---GARVIVTEVDPICALQ 240 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECChhhHHH
Confidence 466899999999999999988766 4567888888665543
No 385
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=42.27 E-value=1.6e+02 Score=27.36 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH-HhhhcCCCCCCceEEc-CCccCCCCCCCCCchHHHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA-QAMKVSPVIPENRLQI-GCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~-q~L~~s~~~a~~ki~i-G~~~t~GlGaG~dP~vG~~aA~e 189 (430)
.+.++.|.|. |+.|..++.+|.++ |.+++.+..+. +.+.........++.. --++ .+++- .+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~---G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~~----~~~ 69 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEA---GADIVGAGRSEPSETQQQVEALGRRFLSLTADL-------SDIEA----IKA 69 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCchHHHHHHHHHhcCCceEEEECCC-------CCHHH----HHH
Confidence 4567999998 67799999999986 45666655432 1111100000111111 1111 12322 223
Q ss_pred hHHHHHHHhcCCCEEEEEccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..+++.+.....|.|+-+||..
T Consensus 70 ~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 70 LVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 3444555667899999988764
No 386
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.08 E-value=99 Score=33.02 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
+.++.|+|.|-.|..++..|. . |+++++.|.
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~---g~~v~v~D~ 36 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N---KYDVIVYDD 36 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C---CCEEEEECC
Confidence 458999999999999988875 3 678888773
No 387
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=41.78 E-value=1.7e+02 Score=27.08 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=48.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C---CCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~---~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
.++.|.|. |+.|..++.+|.++ |.+.+.+..+...+.... . ...-.+... ++ .|++-- .
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dl-------~~~~~~----~ 69 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE---GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM-DV-------TDEEAI----N 69 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc-CC-------CCHHHH----H
Confidence 47999995 89999999999886 567777766544432210 0 001111221 11 234322 2
Q ss_pred HhHHHHHHHhcCCCEEEEEccCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
+..+++.+.+...|.||.+||..
T Consensus 70 ~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 70 AGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 33445566667899999999864
No 388
>PRK07574 formate dehydrogenase; Provisional
Probab=41.64 E-value=50 Score=34.87 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=28.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
.....+|.|||.|..|..++.++... |++.++.|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 45678999999999999999998765 567777764
No 389
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=41.55 E-value=40 Score=32.66 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=29.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
++|.|||.|-.|..++..|.+.+..-..+++.|-+.+.+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~ 39 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIA 39 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHH
Confidence 479999999999999999988764323355666665544
No 390
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=41.54 E-value=52 Score=34.69 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=28.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
...+.++.|||+|..|..++.++... |+++++.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~---G~~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGL---GWKVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHC---CCEEEEECC
Confidence 45678899999999999999998765 567777654
No 391
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=41.45 E-value=88 Score=28.75 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHH
Q 014098 182 VGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANL 259 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L 259 (430)
+-+.|+....+.|.+.+ ....-|+|++|=| .--|-+-++|+.+.+.|..+..+...|+..-. ..++..++.+
T Consensus 4 LME~Ag~~~a~~i~~~~~~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~~ 77 (169)
T PF03853_consen 4 LMENAGRAIAELIRKLFGSPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLVGPPEKLS----EDAKQQLEIL 77 (169)
T ss_dssp HHHHHHHHHHHHHHHHSTCCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEEeccccCC----HHHHHHHHHH
Confidence 34567777778888888 5666777777653 44467889999999999987776666665222 2344555555
Q ss_pred HHh
Q 014098 260 RNN 262 (430)
Q Consensus 260 ~~~ 262 (430)
++.
T Consensus 78 ~~~ 80 (169)
T PF03853_consen 78 KKM 80 (169)
T ss_dssp HHT
T ss_pred Hhc
Confidence 553
No 392
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.38 E-value=2.4e+02 Score=26.17 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=23.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEE
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV 146 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iai 146 (430)
..++.|.|. |+.|..++.+|.+++ .+++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G---~~V~~~ 36 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAG---AHVVVN 36 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 457999997 899999999998874 455444
No 393
>PRK05875 short chain dehydrogenase; Provisional
Probab=41.28 E-value=1.6e+02 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=28.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
...++.|.|. |+.|..++.+|.+.+ .+.+.+..+...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G---~~V~~~~r~~~~ 43 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG---AAVMIVGRNPDK 43 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeCCHHH
Confidence 3468999997 899999999998864 566666665443
No 394
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.21 E-value=44 Score=32.79 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
.||.|||.|-.|+.++..+.+.+ .+.+.+|-|.+.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHH
Confidence 47999999999999999998874 56777887777664
No 395
>PRK12861 malic enzyme; Reviewed
Probab=40.96 E-value=45 Score=38.42 Aligned_cols=38 Identities=13% Similarity=0.416 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
....||.+.|.|.+|..+++.|...++..-++|.+|..
T Consensus 187 l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~ 224 (764)
T PRK12861 187 IKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIE 224 (764)
T ss_pred hhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCC
Confidence 34579999999999999999998877643367887754
No 396
>PLN02712 arogenate dehydrogenase
Probab=40.93 E-value=41 Score=37.96 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=29.6
Q ss_pred CCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 108 ~~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
.++....++|.|||+|..|..++..|.+.+ .+.++++.+
T Consensus 46 ~~~~~~~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 46 NPDNTTQLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCccCCCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 344556679999999999999999998874 455555543
No 397
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.80 E-value=3.1e+02 Score=26.31 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=56.9
Q ss_pred CCCeEEEEeeCcchHHHH---HHHHHc---CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGVGGGGSNAV---NRMIES---SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV---~~m~~~---~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~a 186 (430)
++.||.+.|-||.-+++- ..|.-+ .-+...-+++.||...|..... +. |
T Consensus 40 ~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~N----------Dy----~----------- 94 (176)
T COG0279 40 NGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIAN----------DY----G----------- 94 (176)
T ss_pred cCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhc----------cc----c-----------
Confidence 567899999998888732 122111 2256778999999999876421 10 0
Q ss_pred HHHhHHHHHHHh-cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEE
Q 014098 187 ANESKVAIEEAI-SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237 (430)
Q Consensus 187 A~e~~e~I~~~L-~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIV 237 (430)
.++-..+--+++ +.-|++|=++..| + +.-.--.++.||++|+.||++.
T Consensus 95 yd~vFsRqveA~g~~GDvLigISTSG--N-S~nVl~Ai~~Ak~~gm~vI~lt 143 (176)
T COG0279 95 YDEVFSRQVEALGQPGDVLIGISTSG--N-SKNVLKAIEAAKEKGMTVIALT 143 (176)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCC--C-CHHHHHHHHHHHHcCCEEEEEe
Confidence 122233333444 4567777665543 1 2222233366888999999983
No 398
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=40.69 E-value=1.9e+02 Score=29.75 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch--HHHHHHHHh
Q 014098 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS--VGMNAANES 190 (430)
Q Consensus 114 ~~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~--vG~~aA~e~ 190 (430)
.+||.|+| -|-.|..+++.|.++ +.+++..+.++.....+. + ...+.+. +.|.++. .....-..+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~-~--~~~~~~~-------~~~~~~~~~~~~~v~~~~ 70 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKT-Y--GEAVRWQ-------LDGPIPEEVADMEVVSTD 70 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCc-c--ccccccc-------ccccccccccceEEEeCC
Confidence 47899998 799999999988754 567777775544332221 1 0001010 0011110 000000001
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+ .+.++|+||.+ ++.|.+.-+++.+++.|+.+|-
T Consensus 71 ~~----~~~~~DvVf~a------~p~~~s~~~~~~~~~~G~~vID 105 (349)
T PRK08664 71 PE----AVDDVDIVFSA------LPSDVAGEVEEEFAKAGKPVFS 105 (349)
T ss_pred HH----HhcCCCEEEEe------CChhHHHHHHHHHHHCCCEEEE
Confidence 11 24689999886 3456667776777778876543
No 399
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=40.64 E-value=1.6e+02 Score=29.29 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=25.5
Q ss_pred hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 198 ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 198 L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
+..-|++|++ +..|-| --.-.+++.||+.|+.+|+|...+.+
T Consensus 175 ~~~~Dv~i~i-S~sG~t--~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 175 LTPGDVVIAI-SFSGYT--REIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred CCCCCEEEEE-eCCCCc--HHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 3444666666 443333 23444557788999999999654433
No 400
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=40.63 E-value=2.6e+02 Score=27.98 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
+++|.|.|. |..|..++.+|.+.+ .+.++++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~ 35 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELG---AEVYGYS 35 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCC---CEEEEEe
Confidence 468999996 779999999999874 4555554
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.62 E-value=43 Score=32.64 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=27.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
+||.|||.|..|+-++..|.+.+ .+...++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~ 37 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLD 37 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHH
Confidence 58999999999999999998764 45555555444443
No 402
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=40.48 E-value=1.4e+02 Score=27.51 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..++.|.|. |+.|..++.+|.+++ ...+....+...+.........++. +.-+++ |+ +..++..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~----~~~~~~~ 71 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQG---AIVGLHGTRVEKLEALAAELGERVKIFPANLS-------DR----DEVKALG 71 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhCCceEEEEccCC-------CH----HHHHHHH
Confidence 457999985 778999999998875 3455555555444321100001111 111111 12 2333445
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
+++.+.+...|.||-+||.+.
T Consensus 72 ~~~~~~~~~id~vi~~ag~~~ 92 (245)
T PRK12936 72 QKAEADLEGVDILVNNAGITK 92 (245)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 566666778999999998753
No 403
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=40.46 E-value=1.9e+02 Score=28.81 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=24.0
Q ss_pred CEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 202 DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 202 D~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
|++|++ ...|.| --.-.+++.||+.|+++|+|...|.+
T Consensus 91 d~~i~i-S~sG~t--~~~~~~~~~ak~~g~~vI~iT~~~~s 128 (321)
T PRK11543 91 DVMLFI-SYSGGA--KELDLIIPRLEDKSIALLAMTGKPTS 128 (321)
T ss_pred CEEEEE-eCCCCc--HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 666665 443433 23445567788899999999655544
No 404
>PRK07024 short chain dehydrogenase; Provisional
Probab=40.38 E-value=1.6e+02 Score=27.76 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=48.9
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCceEE-cCCccCCCCCCCCCchHHHHHHHHh
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
.++.|.| -|+.|..++.+|.+. |.+.+.++.+.+.+.... .....++. +--++ .|++ ..++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~----~i~~~ 68 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ---GATLGLVARRTDALQAFAARLPKAARVSVYAADV-------RDAD----ALAAA 68 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCC-------CCHH----HHHHH
Confidence 4678887 578899999999886 456777776655543210 00000111 11111 1232 33344
Q ss_pred HHHHHHHhcCCCEEEEEccCCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGGG 213 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGG 213 (430)
.+++.+.....|.+|-.||...+
T Consensus 69 ~~~~~~~~g~id~lv~~ag~~~~ 91 (257)
T PRK07024 69 AADFIAAHGLPDVVIANAGISVG 91 (257)
T ss_pred HHHHHHhCCCCCEEEECCCcCCC
Confidence 45555556678999999987543
No 405
>PRK12939 short chain dehydrogenase; Provisional
Probab=40.29 E-value=1.7e+02 Score=27.00 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC-----CCCCceEEcCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP-----VIPENRLQIGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~-----~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA 187 (430)
..++.|.|. |+.|..++..|.+. |.+.+++..+...+.... ...+..+.... + .|++ ..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-l-------~~~~----~~ 71 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA---GATVAFNDGLAAEARELAAALEAAGGRAHAIAAD-L-------ADPA----SV 71 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc-C-------CCHH----HH
Confidence 467899996 89999999999886 456666666554333210 00011111111 1 1232 22
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
+...+++.+.+...|.||.++|...
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~~ 96 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAGITN 96 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 2334455555678999999987643
No 406
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=40.25 E-value=1.9e+02 Score=29.41 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc--HHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD--AQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD--~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
++.||.|.|+ |.-|.+++..|.+.+.+ .++.||-. ...+. |-.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVnp~~~~~~v~------------G~~-------------------- 52 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVTPGKGGTTVL------------GLP-------------------- 52 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC--EEEEECCCCCCCeEe------------Cee--------------------
Confidence 4678999999 44889999999887544 66677754 22211 111
Q ss_pred hHHHHHHHhcC--CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 190 SKVAIEEAISG--ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 190 ~~e~I~~~L~g--aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
.+..|.++-+. .|+++|+.. ....|-+.+.|-+.|+..+-|+|-=|.
T Consensus 53 ~y~sv~dlp~~~~~DlAvi~vp------~~~v~~~l~e~~~~gvk~avI~s~Gf~ 101 (291)
T PRK05678 53 VFNTVAEAVEATGANASVIYVP------PPFAADAILEAIDAGIDLIVCITEGIP 101 (291)
T ss_pred ccCCHHHHhhccCCCEEEEEcC------HHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 12223333333 899998754 345566666667789888888765554
No 407
>PRK07680 late competence protein ComER; Validated
Probab=40.23 E-value=46 Score=32.58 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=29.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCC-CcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~-~gve~iaiNTD~q~L~ 154 (430)
++|.|||.|..|..++..|.+.+. ...+.+++|-+.+.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~ 41 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY 41 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH
Confidence 479999999999999999988863 2235566776655443
No 408
>PTZ00175 diphthine synthase; Provisional
Probab=40.23 E-value=2.3e+02 Score=28.48 Aligned_cols=44 Identities=23% Similarity=0.074 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
.++|.+.+++-+.+|+++|--+-.+++.- +...|++.|+.+-.|
T Consensus 67 ~~~ii~~a~~~~Vv~L~~GDP~i~~t~~~--l~~~~~~~gi~vevI 110 (270)
T PTZ00175 67 CDEILEEAKEKNVAFLVVGDPFCATTHTD--LYLRAKKKGIEVEVI 110 (270)
T ss_pred HHHHHHHhCCCCEEEEECCCCCccCCHHH--HHHHHHHCCCcEEEE
Confidence 34455555677899999887776666554 344677788775444
No 409
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=40.19 E-value=1.7e+02 Score=29.48 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=101.6
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIE 195 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I~ 195 (430)
++-|||+|.+.....---.+.-+..+++++-.+-..++-.. .+.+..+.-| .....+. .++.|.
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~d~i~l-~~~k~v~~s~--------m~~Ei~R-------a~~Aie 67 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYLDLIEL-RPGKEVIRSG--------MREEIER-------AKEAIE 67 (249)
T ss_pred eEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHHHHHhc-CCCCEEEeCC--------cHhHHHH-------HHHHHH
Confidence 78999999998764333333334456665544433333221 1112222222 1111111 244456
Q ss_pred HHhcCCCEEEEEccCCCCCCC-CcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhhcccccCccccc
Q 014098 196 EAISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIIPGLVNV 274 (430)
Q Consensus 196 ~~L~gaD~VfI~AGLGGGTGT-GaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~vD~lI~pglINv 274 (430)
.+..|-+..+|. +|-.|- |.|..+.+++.+.+-..|-|=..|= -.. .+|..+ .|- +=+.+-+..+
T Consensus 68 lA~~G~~ValVS---sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPG----vTA-~~aaAa--~lG----APL~hDF~~I 133 (249)
T COG1010 68 LAAEGRDVALVS---SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPG----VTA-ALAAAA--RLG----APLGHDFCVI 133 (249)
T ss_pred HHhcCCeEEEEe---CCCccHHHhHHHHHHHHHhcCCCCccEEEeCC----hHH-HHHHHH--HhC----CCcccceEEE
Confidence 667788888887 455555 7899999999887733333322462 211 111111 110 0001223334
Q ss_pred cHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCCcCCccccCceEEEEEeC-CCCCHHHHHHHHHHHHhhcCC
Q 014098 275 DFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGG-TDLTLFEVNTAAEVIYDLVDP 353 (430)
Q Consensus 275 DfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd~~i~~A~gvLvnI~gg-~dl~L~Ev~~a~~~I~~~~~~ 353 (430)
-++|+-+=.. -+++=+..|.+. +.++.|+-. +.-.-..+.++++++.+.-.+
T Consensus 134 SLSDlLtPwe----------------~IekRl~aAA~a-----------dfVi~~YNP~s~~R~~~~~~a~eil~~~r~~ 186 (249)
T COG1010 134 SLSDLLTPWE----------------VIEKRLRAAAEA-----------DFVIALYNPISKRRPEQLGRAFEILREHRSP 186 (249)
T ss_pred EhHhcCCcHH----------------HHHHHHHHHhhC-----------CEEEEEECCccccchHHHHHHHHHHHHhcCC
Confidence 4455432211 122222333332 233344322 234446788999999999988
Q ss_pred CccEEEeeeeCCCCCCeEEEEEEe
Q 014098 354 SANLIFGAVIDKSLSNQVSITLIA 377 (430)
Q Consensus 354 ~a~Ii~G~~ide~l~d~vrVTvIA 377 (430)
+.-+.++-... .-+++++||.+.
T Consensus 187 ~tpVgivrnag-R~~e~v~ittL~ 209 (249)
T COG1010 187 DTPVGIVRNAG-REGEEVRITTLG 209 (249)
T ss_pred CCcEEEEecCC-CCCceEEEEEhH
Confidence 77776664443 124567777764
No 410
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=40.17 E-value=1.7e+02 Score=27.70 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCC---CCCceEE-cCCccCCCCCCCCCchHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV---IPENRLQ-IGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~---~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA 187 (430)
...++.|.|. |+.|..++.+|.+. |.+++.++.+.+.+..... ....++. +--++ .|++ ..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~---G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~----~~ 74 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKA---GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDV-------TDED----GV 74 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-------CCHH----HH
Confidence 4457888887 57788899999876 4666677766554432100 0001111 11111 1232 23
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
++..+++.+.+...|.|+..||..+
T Consensus 75 ~~~~~~~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 75 QAMVSQIEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCC
Confidence 3344556666677899999998754
No 411
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.11 E-value=18 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESS 137 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~ 137 (430)
....+||.|||.|-.|.+....|.+.+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag 33 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAG 33 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCC
Confidence 345789999999999999999998775
No 412
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.90 E-value=56 Score=27.21 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
...|...++.+|+|+++.+.= .-.+.-.+-+.||+.+++++-.
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~v---sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYV---SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCc---ChHHHHHHHHHHHHcCCcEEEE
Confidence 446889999999999998762 3367777888899999987654
No 413
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=39.86 E-value=1.8e+02 Score=28.43 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=28.1
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcH-HHHHHHHHHcCCcE
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAA-PVIAGIAKSMGILT 233 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaa-PvIA~~AKe~gilt 233 (430)
+..+++.+.++.+|.|+| |+|++++.. -.+.+.+++.+.++
T Consensus 81 ~~~~~~~~~~~~~davvi----g~Gl~~~~~~~~l~~~~~~~~~pv 122 (272)
T TIGR00196 81 WKVDEDEELLERYDVVVI----GPGLGQDPSFKKAVEEVLELDKPV 122 (272)
T ss_pred hhHHHHHhhhccCCEEEE----cCCCCCCHHHHHHHHHHHhcCCCE
Confidence 346677788889998888 555676653 33556677777764
No 414
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.77 E-value=1.4e+02 Score=30.39 Aligned_cols=94 Identities=15% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcc-eEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGV-EFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gv-e~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+..++.|||.|+.|-..+..+... .++ +...+|-+.+...... .++. +. .|. +. ...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~~~~----~~~~--~~----~~~--~~--------~~~ 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSRTFEKAYAFA----QEIQ--SK----FNT--EI--------YVV 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHH----HHHH--Hh----cCC--cE--------EEe
Confidence 345799999999999988777543 233 3445566655433210 0000 00 000 00 012
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+...+++.++|+|+.+.. ++ .|++. -.=+.|..+++|
T Consensus 184 ~~~~~~~~~aDiVi~aT~------s~-~p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 184 NSADEAIEEADIIVTVTN------AK-TPVFS-EKLKKGVHINAV 220 (325)
T ss_pred CCHHHHHhcCCEEEEccC------CC-CcchH-HhcCCCcEEEec
Confidence 334567789999887764 22 48876 433568888777
No 415
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.54 E-value=41 Score=33.25 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|-.|..++..+.+. |.+.+.+|-|.+.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~ 41 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH---GFDVTIYDISDEALEK 41 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 4799999999999999988776 4567778877766654
No 416
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=39.48 E-value=1.2e+02 Score=32.12 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
....+.|+|+||.|-+++......+. -..|++|++...|+.-. .+|.. .. -||. +.. .-.+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA--~~IiAvD~~~~Kl~~A~-------~fGAT--~~----vn~~---~~~-~vv~ 245 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGA--GRIIAVDINPEKLELAK-------KFGAT--HF----VNPK---EVD-DVVE 245 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCC--ceEEEEeCCHHHHHHHH-------hcCCc--ee----ecch---hhh-hHHH
Confidence 45579999999999999999877643 34688888877665421 12221 10 1221 000 2234
Q ss_pred HHHHHhc-CCCEEEEEccC
Q 014098 193 AIEEAIS-GADMIFVTAGM 210 (430)
Q Consensus 193 ~I~~~L~-gaD~VfI~AGL 210 (430)
.|.++-. ++|..|-++|-
T Consensus 246 ~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 246 AIVELTDGGADYAFECVGN 264 (366)
T ss_pred HHHHhcCCCCCEEEEccCC
Confidence 4555555 89999988654
No 417
>PRK09242 tropinone reductase; Provisional
Probab=39.29 E-value=1.5e+02 Score=27.86 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=49.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC-----CCCCceEE-cCCccCCCCCCCCCchHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP-----VIPENRLQ-IGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~-----~~a~~ki~-iG~~~t~GlGaG~dP~vG~~ 185 (430)
...++.|.|. |+.|..++.++.+. |.+.+++..+...+.... ..+..++. +--++ .++ +
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~---G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl-------~~~----~ 73 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGL---GADVLIVARDADALAQARDELAEEFPEREVHGLAADV-------SDD----E 73 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCC-------CCH----H
Confidence 3457888886 67899999999886 456777766554433210 00012221 11111 122 2
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCC
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..++..+++.+.+...|.|+.+||..
T Consensus 74 ~~~~~~~~~~~~~g~id~li~~ag~~ 99 (257)
T PRK09242 74 DRRAILDWVEDHWDGLHILVNNAGGN 99 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 33344556677778899999998763
No 418
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=39.27 E-value=44 Score=33.45 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
++|.|||.|-.|+.++..+.+. |.+.+++|-+.+.++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~---G~~V~v~d~~~~~~~ 39 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA---GHEVRLWDADPAAAA 39 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC---CCeeEEEeCCHHHHH
Confidence 4799999999999999999887 456777887766554
No 419
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=38.98 E-value=1.6e+02 Score=29.03 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIES 136 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~ 136 (430)
+||.|||+|..|..++..+.+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 6899999999999999888665
No 420
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.78 E-value=1.5e+02 Score=27.85 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CC-CCceEE-cCCccCCCCCCCCCchHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~-a~~ki~-iG~~~t~GlGaG~dP~vG~~aA 187 (430)
....+.|.|. ||.|..++.+|.+.+ .+.+.+..+.+.++... .. ...++. +--++ .|++- .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~~~----~ 73 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDV-------SQHQQ----V 73 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCHHH----H
Confidence 3457999998 678999999998874 56666666655543211 00 011211 11111 23322 2
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
++-.+++.+.+...|.++..||..
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 333445566667899999999864
No 421
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=38.69 E-value=1.3e+02 Score=31.92 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
..+||.|.|. |-.|.+++.+|++. |.+.++++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~---G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGR---GDEVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeC
Confidence 4578999996 88999999999987 467777764
No 422
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=38.63 E-value=3.8e+02 Score=28.00 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=74.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.-+.||||||.|+-.++.|-+.++ -.++.+|.|.-.|.+. +|+.+-+.. .|+- --+||..-...|
T Consensus 83 ~aVAiVGvGGVGSV~AeMLTRCGI--GkLlLfDYDkVElANM-----NRLFf~P~Q-aGls-------Kv~AA~~TL~~i 147 (422)
T KOG2336|consen 83 FAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKVELANM-----NRLFFQPDQ-AGLS-------KVDAAVQTLAEI 147 (422)
T ss_pred heeEEEecCchhHHHHHHHHhcCc--ceEEEeecchhhhhcc-----cccccCccc-ccch-------HHHHHHHHHHhc
Confidence 458999999999999999988876 3467889998888663 577665431 1110 012333222222
Q ss_pred HHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHH---cCCcEEEEEeccCCchhHHHHHHHHHHHHHHHH
Q 014098 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS---MGILTVGIATVPFCFEGRRRAIQAQEGVANLRN 261 (430)
Q Consensus 195 ~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe---~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~ 261 (430)
+.|.+|=+..+-=-|=-+.--.+-++-+- -|.++==|...=-.||-+-..++|-.-+...+-
T Consensus 148 -----NPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~Wm 212 (422)
T KOG2336|consen 148 -----NPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWM 212 (422)
T ss_pred -----CCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHH
Confidence 57777776666444433333333333321 244433344445679987666666665555443
No 423
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=38.58 E-value=2.7e+02 Score=31.25 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=36.7
Q ss_pred CCCCCCchHHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCCCCC-CcHHHHHHHHHHcC--CcEEEE
Q 014098 174 LGAGGNPSVGMNAANESKVAIEEAIS--GADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGI 236 (430)
Q Consensus 174 lGaG~dP~vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGGTGT-GaaPvIA~~AKe~g--iltVaI 236 (430)
+|++..+-. -++.++++.+.++ +-|.+|++.| .|| -.|-.+++.+++.| +.+|+|
T Consensus 166 LGS~R~k~~----~~e~~~~~~~~l~~l~Id~LViIGG----ddS~~~A~~Lae~~~~~g~~i~VIGV 225 (568)
T PLN02251 166 ICSGRDKIE----TPEQFKQAEETATKLDLDGLVVIGG----DDSNTNACLLAEYFRAKNLKTRVIGC 225 (568)
T ss_pred ecccCCCcC----CHHHHHHHHHHHHHcCCCEEEEeCC----chHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 466665421 2455667777775 8889999833 333 45778889888877 777776
No 424
>PRK08264 short chain dehydrogenase; Validated
Probab=38.50 E-value=2.5e+02 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
..++.|+|. |+.|..++.+|.+++.+ .++++..+...+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~--~V~~~~r~~~~~~ 45 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAA--KVYAAARDPESVT 45 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcc--cEEEEecChhhhh
Confidence 457899985 88999999999887532 5677777666554
No 425
>PRK06198 short chain dehydrogenase; Provisional
Probab=38.49 E-value=2e+02 Score=26.92 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=47.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcce-EEEEeCcHHhhhcCC--C-CCCceEE-cCCccCCCCCCCCCchHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVE-FWIVNTDAQAMKVSP--V-IPENRLQ-IGCDLTRGLGAGGNPSVGMNA 186 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve-~iaiNTD~q~L~~s~--~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~a 186 (430)
...++.|+|. |+.|..++.++.+.+ .+ .++++.+...+.... + ....++. +--+. .|++ .
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G---~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~~----~ 70 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERG---AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADL-------SDVE----D 70 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC---CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCHH----H
Confidence 3457889986 788999999998774 45 666665544332100 0 0011221 11111 1232 2
Q ss_pred HHHhHHHHHHHhcCCCEEEEEccCC
Q 014098 187 ANESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 187 A~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..+..+.+.+.+...|.||.++|..
T Consensus 71 ~~~~~~~~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 71 CRRVVAAADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 2333455555667899999998753
No 426
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=38.45 E-value=99 Score=30.71 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCC
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSM 138 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~ 138 (430)
+||.|.|. |..|.+++.+|.+.+.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC
Confidence 47899997 9999999999998753
No 427
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=38.32 E-value=2.2e+02 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=28.1
Q ss_pred hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 198 ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 198 L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
+..-|+++++ ...|-| -..--+++.||+.|+.+|+|.--|.+
T Consensus 185 ~~~~Dl~I~i-S~sG~t--~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 185 LQEGDVVLVV-SHSGRT--SDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CCCCCEEEEE-eCCCCC--HHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3445776665 454544 23556678889999999999765544
No 428
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=38.22 E-value=56 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
.....+|.|||.|..|..++.++... |.+.+++|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 45678999999999999999998765 456666663
No 429
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=37.95 E-value=2.5e+02 Score=26.00 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
...++.|.|. |+.|..++.+|.+. |.+.+++..+. +... ..++. +--+. .|++ ..++.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~---G~~v~~~~~~~--~~~~----~~~~~~~~~D~-------~~~~----~~~~~ 66 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEA---GAKVIGFDQAF--LTQE----DYPFATFVLDV-------SDAA----AVAQV 66 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEecch--hhhc----CCceEEEEecC-------CCHH----HHHHH
Confidence 3467899987 57899999999886 46666666554 2211 11111 11111 1222 23334
Q ss_pred HHHHHHHhcCCCEEEEEccC
Q 014098 191 KVAIEEAISGADMIFVTAGM 210 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGL 210 (430)
.+++.+.+...|+||-++|.
T Consensus 67 ~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 67 CQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 45566666778999988875
No 430
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=37.86 E-value=2.1e+02 Score=27.80 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=27.1
Q ss_pred hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 198 ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 198 L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
+..-|++|++ +..|-| --.-.+++.||+.|+.+|+|.-.|.+
T Consensus 173 ~~~~Dv~I~i-S~sg~~--~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 173 LSPDDLLLAI-SYSGER--RELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CCCCCEEEEE-cCCCCC--HHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 4455766655 454443 23446678889999999999655543
No 431
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.80 E-value=3.5e+02 Score=29.34 Aligned_cols=171 Identities=20% Similarity=0.344 Sum_probs=95.6
Q ss_pred CCCCeEEEEeeCc--chHHHH-HHHHHcCC--Cc-ceEEEEeCcHHhhhcCCCCCCceEEcCCcc------CCC--CCCC
Q 014098 112 NNEAKIKVIGVGG--GGSNAV-NRMIESSM--TG-VEFWIVNTDAQAMKVSPVIPENRLQIGCDL------TRG--LGAG 177 (430)
Q Consensus 112 ~~~~kIkVIGVGG--aG~NiV-~~m~~~~~--~g-ve~iaiNTD~q~L~~s~~~a~~ki~iG~~~------t~G--lGaG 177 (430)
...++|.|+=+|| .|.|.+ ..+.+.-. .+ .+.+.+.-=.+-|-... ..+-+.|..+. ..| ||+.
T Consensus 78 p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~--~~~~~~Lt~~~v~~i~~~GGTiLGTs 155 (443)
T PRK06830 78 PSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRY--GHDPVELTPEVVADIHEFGGTILGSS 155 (443)
T ss_pred CcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhcc--CCCEEECCHHHHhhHHhCCCccccCC
Confidence 4568888888887 466633 33333211 12 34555554444432210 01112221110 112 6776
Q ss_pred CCchHHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCCCCC-CcHHHHHHHHHHcC--CcEEEEEeccCC----------
Q 014098 178 GNPSVGMNAANESKVAIEEAIS--GADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIATVPFC---------- 242 (430)
Q Consensus 178 ~dP~vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGGTGT-GaaPvIA~~AKe~g--iltVaIVTlPF~---------- 242 (430)
..|. +.++|.+.|+ +.|.+|++.|= || -+|-.|++.+++.| +.+|+| |-.
T Consensus 156 R~~~--------~~~~iv~~L~~~~I~~L~vIGGd----gT~~gA~~l~ee~~~~g~~I~VIGI---PKTIDNDi~~td~ 220 (443)
T PRK06830 156 RGPQ--------DPEEIVDTLERMNINILFVIGGD----GTLRGASAIAEEIERRGLKISVIGI---PKTIDNDINFIQK 220 (443)
T ss_pred CCch--------hHHHHHHHHHHcCCCEEEEeCCc----hHHHHHHHHHHHHHHhCCCceEEEe---ccccCCCCcCccc
Confidence 6553 5677888884 89999999443 44 35667778777766 677776 432
Q ss_pred chh-HHHHHHHHHHHHHHHHhhccc---c----------------------------cCc-ccccc-----HHHHHHHHh
Q 014098 243 FEG-RRRAIQAQEGVANLRNNVDTL---I----------------------------IPG-LVNVD-----FADVRAIMK 284 (430)
Q Consensus 243 fEG-~~r~~~A~~gL~~L~~~vD~l---I----------------------------~pg-lINvD-----faDvk~Il~ 284 (430)
.-| ....+.|.+.+..+...+.+. | +|- .+++| +..|+.-++
T Consensus 221 S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~ 300 (443)
T PRK06830 221 SFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLA 300 (443)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHH
Confidence 112 234567788888887765432 1 110 12333 346777777
Q ss_pred hcCeeEEEEEEecCC
Q 014098 285 DAGSSLMGIGTATGK 299 (430)
Q Consensus 285 ~~G~A~mGiG~a~G~ 299 (430)
..+.+++=+.++-|.
T Consensus 301 ~~~~~VIVVAEGag~ 315 (443)
T PRK06830 301 ERGHAVIVVAEGAGQ 315 (443)
T ss_pred hCCceEEEEecCccc
Confidence 788899988887653
No 432
>PRK08265 short chain dehydrogenase; Provisional
Probab=37.79 E-value=1.6e+02 Score=28.02 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
..++.|.|. |+.|..++.+|.+.+ .+.+.++-+.+.+.........++. +--++ .|+ +..++..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~~~~~~ 71 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAG---ARVAIVDIDADNGAAVAASLGERARFIATDI-------TDD----AAIERAV 71 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhCCeeEEEEecC-------CCH----HHHHHHH
Confidence 457899987 788999999998874 5666666655443321100011111 11111 122 2233345
Q ss_pred HHHHHHhcCCCEEEEEccCC
Q 014098 192 VAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLG 211 (430)
+++.+.+...|.||-.||..
T Consensus 72 ~~~~~~~g~id~lv~~ag~~ 91 (261)
T PRK08265 72 ATVVARFGRVDILVNLACTY 91 (261)
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 55666677899999998754
No 433
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=37.77 E-value=1.7e+02 Score=29.61 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=27.1
Q ss_pred HhcCCCEEEEEccCCCCCCCCcHHHHH---HHHHHcCCcEEEEEeccC
Q 014098 197 AISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIATVPF 241 (430)
Q Consensus 197 ~L~gaD~VfI~AGLGGGTGTGaaPvIA---~~AKe~giltVaIVTlPF 241 (430)
.+..-|++|+++.= |-+|.+. +.||+.|++||+|...|.
T Consensus 123 ~l~~~DvvI~IS~S------G~T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 123 HLTKNDVVVGIAAS------GRTPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCCCCEEEEEeCC------CCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35667888887643 3355554 567889999999976555
No 434
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.76 E-value=2.2e+02 Score=25.33 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHhHHHHHHHhcCCCEEEE--EccCCCCCCC--------------CcHHHHHHHHHHcCCcEEEEEec--cCC-chh-HH
Q 014098 188 NESKVAIEEAISGADMIFV--TAGMGGGTGT--------------GAAPVIAGIAKSMGILTVGIATV--PFC-FEG-RR 247 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI--~AGLGGGTGT--------------GaaPvIA~~AKe~giltVaIVTl--PF~-fEG-~~ 247 (430)
....+++++.++..++-+. .......... --..-.+++|+++|+..+.+..- +.. ... ..
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH
Confidence 4568889999987665533 3333333321 12345557889999999887644 111 111 24
Q ss_pred HHHHHHHHHHHHHHhh---cccc----cCcccc---ccHHHHHHHHhhcCeeEEEEEEec
Q 014098 248 RAIQAQEGVANLRNNV---DTLI----IPGLVN---VDFADVRAIMKDAGSSLMGIGTAT 297 (430)
Q Consensus 248 r~~~A~~gL~~L~~~v---D~lI----~pglIN---vDfaDvk~Il~~~G~A~mGiG~a~ 297 (430)
...++.+.|++|.+.+ +..| .++... .++.++..+++.-+.--+|+-.-.
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~D~ 165 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICFDT 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEEEH
T ss_pred HHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEEeh
Confidence 6677888888888877 3223 233222 224788888887765446665543
No 435
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=37.75 E-value=1.1e+02 Score=30.89 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=25.0
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD 149 (430)
...++.|||.||++..++-.|...++. +...+|-+
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~--~i~i~nRt 157 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRR 157 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEeCC
Confidence 345899999999988777778776554 34556644
No 436
>PRK09186 flagellin modification protein A; Provisional
Probab=37.55 E-value=2.2e+02 Score=26.50 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
+.++.|.|. |+.|..++.+|.+.+ .+.+.+..+...+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g---~~v~~~~r~~~~~ 41 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG---GIVIAADIDKEAL 41 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecChHHH
Confidence 457889987 789999999998864 5666666554443
No 437
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=37.49 E-value=2.4e+02 Score=26.64 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=52.9
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC--cHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT--DAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 116 kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT--D~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
||.+||+|.++-.-+.-=...-++.++.++.++ ....+...+. ....+.+++.. .......++..+.
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~~~~l~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~ 69 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPP-QAELIDVGKRP----------GCHSKKQEEINRL 69 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCCHHHHhhCCC-CCEEEeCCCCC----------CCCCCCHHHHHHH
Confidence 588999999876533322222245677777755 2233433221 11233333221 1000111222333
Q ss_pred HHHH-hcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCc
Q 014098 194 IEEA-ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232 (430)
Q Consensus 194 I~~~-L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gil 232 (430)
|.+. .++-+++|++.|--+=-|+ .-.+++.+++.++.
T Consensus 70 i~~~~~~g~~V~~l~~GDP~~~~~--~~~l~~~~~~~~~~ 107 (236)
T TIGR01469 70 LVELAREGKKVVRLKGGDPFVFGR--GGEEAEALAEAGIP 107 (236)
T ss_pred HHHHHHCCCeEEEEeCcCcccccC--HHHHHHHHHHCCCC
Confidence 4443 3577888888777655444 34666667766654
No 438
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=37.44 E-value=64 Score=33.39 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=68.9
Q ss_pred CchHHHHHH-HHhHHHHHHHhcCCCEEEEEccCCCCCCC----Cc-HHHHHHHHHHcCCcEEE-EEeccCCchhHHHHHH
Q 014098 179 NPSVGMNAA-NESKVAIEEAISGADMIFVTAGMGGGTGT----GA-APVIAGIAKSMGILTVG-IATVPFCFEGRRRAIQ 251 (430)
Q Consensus 179 dP~vG~~aA-~e~~e~I~~~L~gaD~VfI~AGLGGGTGT----Ga-aPvIA~~AKe~giltVa-IVTlPF~fEG~~r~~~ 251 (430)
+|+.-+... +-...++.+..+.+|+.|+-.|-=.-..+ |. .+...+..++.| .|| |....|..+|.
T Consensus 185 s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~~~~~g~~~~~~~~~l~~~g--aVGdi~g~ffD~~G~----- 257 (321)
T COG2390 185 SPELREALLQEPSVREVLDLARSADLALVGIGSLSANSTLVRSGFIYEEELEALLAKG--AVGDILGRFFDANGQ----- 257 (321)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccchhhhhcCCCHHHHHHHHhCC--cceecccceecCCCC-----
Confidence 455544443 33566667777899999997654432222 11 122222223333 455 44567777773
Q ss_pred HHHHHHHHHHhhcccccCccccccHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCCc
Q 014098 252 AQEGVANLRNNVDTLIIPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLD 316 (430)
Q Consensus 252 A~~gL~~L~~~vD~lI~pglINvDfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLLd 316 (430)
.+|+.+..=.|-+++.|++++=. . |+.|.|+.++ +|+..||...+++
T Consensus 258 ----------~~~~~ln~r~igl~L~~l~~ip~-----v--I~vAgG~~K~-~AI~aaL~gg~~n 304 (321)
T COG2390 258 ----------PVDTPLNDRVIGLSLDDLRQIPK-----V--IAVAGGESKA-EAILAALRGGYIN 304 (321)
T ss_pred ----------CccccccCceecCCHHHHhcCCc-----E--EEEeCCcccH-HHHHHHHhCCCCC
Confidence 45655555678999999987643 3 4556566655 5999999988885
No 439
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=37.20 E-value=83 Score=32.45 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=48.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVA 193 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~ 193 (430)
.|+.|+|. |-+|.-++..|..+ +.++...+..+.+ +. + . +
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~-~~-------------------------~--------~---~ 42 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR-KD-------------------------A--------A---E 42 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc-cC-------------------------c--------C---C
Confidence 47889987 44666777777555 6788877755432 00 0 0 1
Q ss_pred HHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 194 I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
..+.++++|++|++. +.|.+.-++..+.+.|..+|
T Consensus 43 ~~~~~~~~D~vFlal------p~~~s~~~~~~~~~~g~~VI 77 (310)
T TIGR01851 43 RAKLLNAADVAILCL------PDDAAREAVSLVDNPNTCII 77 (310)
T ss_pred HhHhhcCCCEEEECC------CHHHHHHHHHHHHhCCCEEE
Confidence 234557899999975 45677777777777777655
No 440
>PRK06482 short chain dehydrogenase; Provisional
Probab=37.17 E-value=1.4e+02 Score=28.36 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=47.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE--cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ--IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~--iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
.++.|.|. |+.|..++.+|.+.+ ...+++..+.+.+.........++. -. +. .|++ ..++..
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-D~-------~~~~----~~~~~~ 67 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG---DRVAATVRRPDALDDLKARYGDRLWVLQL-DV-------TDSA----AVRAVV 67 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhccCceEEEEc-cC-------CCHH----HHHHHH
Confidence 36888985 889999999998874 5666666655544321100011111 11 11 1232 222233
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
+++.+.+...|.||-+||...
T Consensus 68 ~~~~~~~~~id~vi~~ag~~~ 88 (276)
T PRK06482 68 DRAFAALGRIDVVVSNAGYGL 88 (276)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 445555677899999998753
No 441
>PRK06181 short chain dehydrogenase; Provisional
Probab=37.05 E-value=3e+02 Score=25.82 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=47.6
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C-CCCceEE-cCCccCCCCCCCCCchHHHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
.++.|.|. |+.|..++.++.+. +.++++++.+...+.... . ....+++ +-.++ .|++ ..++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~---g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl-------~~~~----~~~~ 67 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA---GAQLVLAARNETRLASLAQELADHGGEALVVPTDV-------SDAE----ACER 67 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-------CCHH----HHHH
Confidence 36888988 88899999999876 456777776654432110 0 0011111 11111 1222 2333
Q ss_pred hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
..+++.+.+...|.||-+||...
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGITM 90 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCccc
Confidence 34445555668899999987643
No 442
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=36.98 E-value=45 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=34.8
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCC-cEEEEEe
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGI-LTVGIAT 238 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gi-ltVaIVT 238 (430)
.+..+.+..++....+=+ +.++||..+.+++-.|.++|+++|. +.||+|+
T Consensus 57 ~~~L~~~L~~~~~~gIkv-I~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~ 107 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKV-ITNAGGLNPAGCADIVREIARELGLSLKVAVVY 107 (362)
T ss_pred HHHHHHHHHHHHhCCCCE-EEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEE
Confidence 344444444444433333 4478999999999999999999986 5577775
No 443
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=36.83 E-value=4.7e+02 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=17.6
Q ss_pred CCeEEEEeeCcchHH-HHHHHHHcCC
Q 014098 114 EAKIKVIGVGGGGSN-AVNRMIESSM 138 (430)
Q Consensus 114 ~~kIkVIGVGGaG~N-iV~~m~~~~~ 138 (430)
.-+|.||.-|++-+- +.|.+...+.
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~ 281 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGG 281 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC
Confidence 357889988877666 5577776654
No 444
>COG3596 Predicted GTPase [General function prediction only]
Probab=36.80 E-value=4.4e+02 Score=27.28 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=84.3
Q ss_pred CCCCCeEEEEeeCcchH-HHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 111 NNNEAKIKVIGVGGGGS-NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~-NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
....++|.+.|-=|+|- +.+|+|......-+.-+.+.||..-....... .+.+.|= .+.|+|=|.+.+ .+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lw--DtPG~gdg~~~D------~~ 106 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLW--DTPGLGDGKDKD------AE 106 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEe--cCCCcccchhhh------HH
Confidence 45678899999988884 58899987666667777778876633221111 2333332 267888776554 34
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCC-CCCcHHHHHHHHHH-cCCcEEEEEe-----ccC---CchhHHHHHHHHHHHHHH
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGT-GTGAAPVIAGIAKS-MGILTVGIAT-----VPF---CFEGRRRAIQAQEGVANL 259 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGT-GTGaaPvIA~~AKe-~giltVaIVT-----lPF---~fEG~~r~~~A~~gL~~L 259 (430)
..+.+++.+...|+|++.--++--- |+- .-.+-+++-. .+..++.+|| +|- .+.+....-..++.+++=
T Consensus 107 ~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 107 HRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 5777899999999777765443222 221 2222233322 3477888887 563 344443333344444433
Q ss_pred HHhhcccc
Q 014098 260 RNNVDTLI 267 (430)
Q Consensus 260 ~~~vD~lI 267 (430)
.+..+.+|
T Consensus 186 ~~~~~~~~ 193 (296)
T COG3596 186 AEALGRLF 193 (296)
T ss_pred HHHHHHHH
Confidence 33333333
No 445
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.66 E-value=2.8e+02 Score=29.18 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=58.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh--hhcCCC----------CCCceEEcCCccCCCCCCCCCchH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA--MKVSPV----------IPENRLQIGCDLTRGLGAGGNPSV 182 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~--L~~s~~----------~a~~ki~iG~~~t~GlGaG~dP~v 182 (430)
++|.|+|+|+.|-.++..|. . |.+....|.+... +....+ ....-+... .|.- -.+|++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~---G~~V~~~D~~~~~~~~~~~gi~~~~~~~~~~~~~d~vv~s----p~i~-~~~~~~ 71 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K---FGGVDIFDDKFTESHKDEEGNLLLPSNDFDPNKSDLEIPS----PGIP-PSHPLI 71 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C---CCeEEEEcCCCCccchhhcCCEEecHHHcCcCCCCEEEEC----CCCC-CCCHHH
Confidence 57999999999997777765 4 5666676643111 111000 000111111 1111 124554
Q ss_pred HHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 183 GMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 183 G~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
- +|++-..++.-+.+-...++-++|--|-|- .+-.++.++++.|..+-+.+-.|+.
T Consensus 72 ~--~a~~i~~~~e~~~~~~~~~i~ITGT~GKTT--Tt~ml~~iL~~~g~~~~gniG~p~~ 127 (401)
T PRK03815 72 Q--KAKNLISEYDYFYDVMPFSIWISGTNGKTT--TTQMTTHLLEDFGAVSGGNIGTPLA 127 (401)
T ss_pred H--HHHHHhhHHHHHHHhcCCEEEEECCCcHHH--HHHHHHHHHHHCCCcEEEEecHhHH
Confidence 2 222222222111111233566667666663 3557888888888666667667764
No 446
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=36.63 E-value=2.7e+02 Score=26.17 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C-CCCceEE-cCCccCCCCCCCCCchHHHHHH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA 187 (430)
.+.++.|.|. |+.|..++.+|.+++ ...+.+..+...++... + ....++. +--++ .|++ ..
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl-------~d~~----~i 76 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG---ARVVLSARKAEELEEAAAHLEALGIDALWIAADV-------ADEA----DI 76 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCHH----HH
Confidence 3468999985 888999999998864 56666665544432210 0 0011211 11111 2333 22
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
++..+++.+.+...|.||-+||..
T Consensus 77 ~~~~~~~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 77 ERLAEETLERFGHVDILVNNAGAT 100 (259)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 333455555667889999998764
No 447
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=36.60 E-value=3.3e+02 Score=26.27 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILT 233 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gilt 233 (430)
+.+.+.++++|++++..-+...........+++.+++.++.+
T Consensus 119 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 160 (304)
T TIGR03828 119 EKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKV 160 (304)
T ss_pred HHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 345567899999988754433333344556667788888764
No 448
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.47 E-value=59 Score=28.57 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcC
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~g 230 (430)
+.|.++++.+|+|+++ ||||-|..-...+..++++
T Consensus 50 ~~i~~~~~~~Dlvitt----GG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 50 AALIEASREADLVLTT----GGTGVGRRDVTPEALAELG 84 (133)
T ss_pred HHHHHHHhcCCEEEEC----CCCCCCCCcchHHHHHHhc
Confidence 4455666779988887 4566666555555555554
No 449
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.47 E-value=45 Score=33.38 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
+.++|.|||.|..|+-+.-+|.+.+ ..|.+++-+. .+++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~-~~~~~ 43 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD-YEAVR 43 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC-HHHHH
Confidence 3479999999999999999998875 4566776654 44443
No 450
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=36.40 E-value=2.8e+02 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=28.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEE-EEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFW-IVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~i-aiNTD~q~L~ 154 (430)
++|.+||+|..|.-++..+ +.+..+++++ +.|+|.....
T Consensus 1 l~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~ 40 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDEEKAK 40 (255)
T ss_pred CeEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCHHHHH
Confidence 5799999999999877665 5554678864 4778776544
No 451
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=36.35 E-value=55 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=30.1
Q ss_pred CeEEEEeeC-------cchHHHHHHHHHcCCCcceEEEEeCcHHh
Q 014098 115 AKIKVIGVG-------GGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (430)
Q Consensus 115 ~kIkVIGVG-------GaG~NiV~~m~~~~~~gve~iaiNTD~q~ 152 (430)
+|+.|+|+| |.|-.++++|.+...++++++-..|....
T Consensus 1 ~~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt~~~~ 45 (156)
T PRK11544 1 MTDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGSAPEN 45 (156)
T ss_pred CcEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCCCHHH
Confidence 478999999 78999999997776667887777776543
No 452
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=36.10 E-value=2.5e+02 Score=23.18 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=53.9
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceE-EEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEF-WIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~-iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..++.|+|+|+.|...+..+.+. .+..+ .++++|...+.. ++. | -|- ..+.+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G~-------~i~-g-----------ipV------~~~~~ 55 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDVDPEKIGK-------EIG-G-----------IPV------YGSMD 55 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEECTTTTTS-------EET-T-----------EEE------ESSHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEcCCCccCc-------EEC-C-----------EEe------eccHH
Confidence 46899999999999988544443 23332 567777664322 110 1 011 01355
Q ss_pred HHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEe
Q 014098 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT 238 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVT 238 (430)
++.+.+ +.|+.+|+. ..-.++-.++.+-+.|+..|-..|
T Consensus 56 ~l~~~~-~i~iaii~V------P~~~a~~~~~~~~~~gIk~i~nft 94 (96)
T PF02629_consen 56 ELEEFI-EIDIAIITV------PAEAAQEVADELVEAGIKGIVNFT 94 (96)
T ss_dssp HHHHHC-TTSEEEEES-------HHHHHHHHHHHHHTT-SEEEEES
T ss_pred Hhhhhh-CCCEEEEEc------CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 566666 599988887 334455566655567888776543
No 453
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=36.02 E-value=74 Score=32.30 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 110 ~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
....+.++.|||.|..|..++.++... |.+.+++|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 356788999999999999999888554 566777664
No 454
>PRK05650 short chain dehydrogenase; Provisional
Probab=35.98 E-value=3.1e+02 Score=26.04 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--C-CCCceEE-cCCccCCCCCCCCCchHHHHHHHHh
Q 014098 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 116 kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
++.|.|. |+.|..++.+|.+. |.+.+++.-+...+.... . ....++. +.-+++ |++ ..++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~----~~~~~ 67 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE---GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVR-------DYS----QLTAL 67 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCC-------CHH----HHHHH
Confidence 5788885 78899999999886 456666665544432110 0 0011111 111211 222 22334
Q ss_pred HHHHHHHhcCCCEEEEEccCCC
Q 014098 191 KVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.+.+.+.+...|.||-.||...
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~~ 89 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVAS 89 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 5556667778999999988653
No 455
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=35.98 E-value=57 Score=32.51 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=30.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~ 155 (430)
.+|.|||.|-.|..++..|.+.+ .+++++|-+.+.++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~~~~~~~~ 39 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDVNPQAVDA 39 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcCCHHHHHH
Confidence 37999999999999999998874 567777877666543
No 456
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.94 E-value=3.4e+02 Score=24.76 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=44.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC-cHHhhhcCC--C-CCCceEE-cCCccCCCCCCCCCchHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKVSP--V-IPENRLQ-IGCDLTRGLGAGGNPSVGMNAA 187 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNT-D~q~L~~s~--~-~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA 187 (430)
+.++.|.|. |+.|..++.+|.+.+ .+.+.+.. +...+.... . ....++. +-.++ .|++- .
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~~----~ 70 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG---ANVVINYASSEAGAEALVAEIGALGGKALAVQGDV-------SDAES----V 70 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCC-------CCHHH----H
Confidence 457889886 788999999998874 45434332 221111000 0 0011221 11111 22322 2
Q ss_pred HHhHHHHHHHhcCCCEEEEEccCCC
Q 014098 188 NESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 188 ~e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
.+..+++.+.+...|.||.+||...
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~~~ 95 (248)
T PRK05557 71 ERAVDEAKAEFGGVDILVNNAGITR 95 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCC
Confidence 2334455666678999999987654
No 457
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=35.93 E-value=1.8e+02 Score=29.06 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=25.8
Q ss_pred CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCC
Q 014098 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC 242 (430)
Q Consensus 201 aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~ 242 (430)
-|++|++ ...|.| --.--+++.||+.|+++|+|..-|.+
T Consensus 95 ~d~~I~i-S~sG~t--~~~~~~~~~ak~~g~~vi~iT~~~~s 133 (326)
T PRK10892 95 QDVVIAI-SNSGES--SEILALIPVLKRLHVPLICITGRPES 133 (326)
T ss_pred CCEEEEE-eCCCCC--HHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 3665555 444433 34555667889999999999776654
No 458
>PRK07060 short chain dehydrogenase; Provisional
Probab=35.85 E-value=1.3e+02 Score=27.69 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
...++.|.|. |+.|..++..+.++ +.+.+.+..+.+.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~---g~~V~~~~r~~~~~ 46 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQR---GARVVAAARNAAAL 46 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHC---CCEEEEEeCCHHHH
Confidence 3468999998 78999999999886 45677777665544
No 459
>PLN02735 carbamoyl-phosphate synthase
Probab=35.75 E-value=7.4e+02 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=28.9
Q ss_pred CCCeEEEEeeCc--ch---------HHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 113 NEAKIKVIGVGG--GG---------SNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 113 ~~~kIkVIGVGG--aG---------~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
+..||.|+|.|. .| ..++..+.+. |++.+++|+|.....
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~---G~~tI~v~~npetvs 622 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDA---GYETIMMNSNPETVS 622 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHc---CCeEEEEeCCCcccc
Confidence 467999999997 34 3355666554 789999999888654
No 460
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=35.46 E-value=5.3e+02 Score=26.82 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=110.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcH-HhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDA-QAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iai-NTD~-q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
++||.|||.|..|..++..+.+. ++++++++ +.+. ..+.. . ++. -. .
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~-~--------~~v--------~~------------~ 51 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT-E--------TPV--------YA------------V 51 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh-c--------CCc--------cc------------c
Confidence 58999999999999988877654 57887764 5552 32221 0 010 00 0
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHh-hcccccCc
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN-VDTLIIPG 270 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~-vD~lI~pg 270 (430)
.++.+.+.+.|+|+|++.- .+= .|.+.+++ +.|+.||.-- -|... .....+-|.+..+. -..-+...
T Consensus 52 ~d~~e~l~~iDVViIctPs----~th-~~~~~~~L-~aG~NVV~s~-~~h~~-----~p~~~~~ld~AAk~~g~vsvi~~ 119 (324)
T TIGR01921 52 ADDEKHLDDVDVLILCMGS----ATD-IPEQAPYF-AQFANTVDSF-DNHRD-----IPRHRQVMDAAAKAAGNVSVIST 119 (324)
T ss_pred CCHHHhccCCCEEEEcCCC----ccC-HHHHHHHH-HcCCCEEECC-CcccC-----CHHHHHHHHHHHHHcCCEEEEEC
Confidence 1133345789999998432 222 56655554 4788887752 12221 11122233333332 12222111
Q ss_pred cccccHHHHHHHHhhc----C--eeEEEEEEecCCch-----------------HHHHHHHHHhCCCCcCCccccCceEE
Q 014098 271 LVNVDFADVRAIMKDA----G--SSLMGIGTATGKSR-----------------ARDAALNAIQSPLLDIGIETATGIVW 327 (430)
Q Consensus 271 lINvDfaDvk~Il~~~----G--~A~mGiG~a~G~~r-----------------a~~Av~~AL~sPLLd~~i~~A~gvLv 327 (430)
=++-+|--++.++.++ | .++.|=|...|... +++|+..+++--.-+..-..+..--.
T Consensus 120 GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip~~dal~~v~~Ge~~~l~~~~~h~r~~ 199 (324)
T TIGR01921 120 GWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLPSEDALEKARRGEAPELTGKQTHKRQC 199 (324)
T ss_pred CCCcChHHHHHHHHhccCCCCcceeccCCCcCchhhhhhcccCCcccceEEEEehHHHHHHHHcCCccccccccceeeeE
Confidence 2344455555555442 2 34555444444322 34455555532222333344444444
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhcC-CCccEEEeeeeCCCCCCeE-----EEEEEeecCCC
Q 014098 328 NITGGTDLTLFEVNTAAEVIYDLVD-PSANLIFGAVIDKSLSNQV-----SITLIATGFKG 382 (430)
Q Consensus 328 nI~gg~dl~L~Ev~~a~~~I~~~~~-~~a~Ii~G~~ide~l~d~v-----rVTvIATGf~~ 382 (430)
.+.....-.+.+|.+.+...-..+. .+..|.|= -++++.... -+-||-+|...
T Consensus 200 ~vv~e~g~~~~~v~~~i~~~p~yf~~~~t~v~~i--~~~~~~~~~~~~~hg~~~~r~g~t~ 258 (324)
T TIGR01921 200 FVVLKDGADHERVENEIRTMPDYFVGYETEVNFI--DEATFDSEHTGMPHGGHVIRTGDSG 258 (324)
T ss_pred EEEecCCCCHHHHHHHHhhCcccccCCCcEEEEe--ChHHHHHhcCCCCCceEEEEEecCC
Confidence 4444444567777777665555553 45555553 222221111 35677777543
No 461
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=35.41 E-value=2.3e+02 Score=28.58 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHHHHh----hcccccCccccccHHHHHHHHhhcCeeEEEEEEecC
Q 014098 252 AQEGVANLRNN----VDTLIIPGLVNVDFADVRAIMKDAGSSLMGIGTATG 298 (430)
Q Consensus 252 A~~gL~~L~~~----vD~lI~pglINvDfaDvk~Il~~~G~A~mGiG~a~G 298 (430)
|.+.|++.+.+ +|.++.+++ +-...+.|-+.-..-+||||.+.+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v---~~~~~~~i~~~l~iP~igiGaG~~ 207 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECV---PAELAKEITEALSIPTIGIGAGPD 207 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC---CHHHHHHHHHhCCCCEEEeccCCC
Confidence 55666666665 466666665 225667777777778888887654
No 462
>PRK05586 biotin carboxylase; Validated
Probab=35.38 E-value=1.5e+02 Score=31.35 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHh--hhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA--MKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~--L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
.||.|+|-|..|..++....+. |++.+++.++... .... .++..+.++... +. + +..+.+
T Consensus 3 kkvli~g~G~~~~~~~~aa~~l---G~~~v~v~~~~d~~a~~~~--~aD~~~~~~~~~--------~~----~-~y~~~~ 64 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREM---GIETVAVYSEADKDALHVQ--LADEAVCIGPAS--------SK----D-SYLNIQ 64 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHc---CCcEEEEcChHhccCcchh--hCCEEEEeCCCC--------hh----h-cccCHH
Confidence 4899999999999999998776 5666777655332 2211 246667776420 00 0 111233
Q ss_pred HHHHHh--cCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 193 AIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 193 ~I~~~L--~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.|.+.. .++|.|+-..|.= .--+.+++++++.|+..++
T Consensus 65 ~i~~~~~~~~~d~i~p~~~~~-----~E~~~~a~~~~~~gi~~~g 104 (447)
T PRK05586 65 NIISATVLTGAQAIHPGFGFL-----SENSKFAKMCKECNIVFIG 104 (447)
T ss_pred HHHHHHHHcCCCEEEcCcccc-----ccCHHHHHHHHHCCCcEEC
Confidence 444443 4788776432211 1114777777777866554
No 463
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=35.17 E-value=1.2e+02 Score=26.43 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=42.0
Q ss_pred CCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHHHHHHHHHHHHhh
Q 014098 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNV 263 (430)
Q Consensus 201 aD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~A~~gL~~L~~~v 263 (430)
+..|+++.|-+.+.+..=+.+.++.+.++|++.-.|..-|.+.- ...||....+-|++.-
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~---T~ena~~~~~~~~~~~ 94 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTN---TYENARFSAELLRERG 94 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCC---HHHHHHHHHHHHHhcC
Confidence 66777765555554566789999999999986655655555433 5678888877777653
No 464
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=35.16 E-value=66 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
...+.+|.|||.|..|..++.++... |.+.+++|.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 45678999999999999999999765 456777764
No 465
>PLN02928 oxidoreductase family protein
Probab=34.96 E-value=49 Score=34.16 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
...+.++.|||.|..|..++.++... |.+.+++|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPF---GVKLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 46678999999999999999998755 457777765
No 466
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.91 E-value=58 Score=33.50 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=31.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~ 154 (430)
.+|.|||.|-.|..++..+... |.+....|.+.+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~ 44 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEA 44 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHH
Confidence 4799999999999999998876 678888888877654
No 467
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=34.78 E-value=1.8e+02 Score=29.01 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCCCC-CCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEeccCCchhHHHHHH
Q 014098 173 GLGAG-GNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQ 251 (430)
Q Consensus 173 GlGaG-~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlPF~fEG~~r~~~ 251 (430)
|.|.| |||++----| .+.|+.+|.||+- +.+|.-+ =|--++.+.++ -+...+ .+-.|..+|.+...++
T Consensus 6 gVGvGPGDPeLlTlkA-------i~~L~~adVi~~P-~~~g~~s-lAr~Iv~~y~~-~~~~~~-~l~fPm~~~~~e~~~~ 74 (234)
T COG2243 6 GVGLGPGDPELLTLKA-------IRALKKADVVYVP-SKKGKGS-LAREIVEDYLT-PGSRIV-ELHFPMTTDMREELED 74 (234)
T ss_pred EEecCCCChhhhhHHH-------HHHHhhCCEEEEe-cCCCccc-hHHHHHHHhcC-CCceee-EEEeccCCchHHHHHH
Confidence 44555 7997543211 3578999999999 6666553 22222223333 233333 3336998884222222
Q ss_pred -HHHHHHHHHHhhcccccCccccc-------cHHHHHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCC
Q 014098 252 -AQEGVANLRNNVDTLIIPGLVNV-------DFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL 315 (430)
Q Consensus 252 -A~~gL~~L~~~vD~lI~pglINv-------DfaDvk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLL 315 (430)
-++..+++..+.+.==.-+++.+ =|.-+..-|+..| +.+=.-.|-. +..|.-.++.-||-
T Consensus 75 ~~~e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~---~e~e~VPGVs-S~~a~aa~~~~pL~ 142 (234)
T COG2243 75 AWEEAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERG---FEVEVVPGVS-SFSACAARLGVPLV 142 (234)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccC---CceEEeCCcc-hHHHHHHHhCCcee
Confidence 22222333333221100012221 2566777777765 3333333432 34456666665654
No 468
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=34.68 E-value=1.9e+02 Score=32.17 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred CeEEEEeeCc--chHHHHHHHHHcCC---CcceEEEEeCcHHhhh
Q 014098 115 AKIKVIGVGG--GGSNAVNRMIESSM---TGVEFWIVNTDAQAMK 154 (430)
Q Consensus 115 ~kIkVIGVGG--aG~NiV~~m~~~~~---~gve~iaiNTD~q~L~ 154 (430)
..|.+||||| -|-.++-..++.-. ..+.|+ -|+|...+.
T Consensus 152 ~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fv-sNvDp~~~~ 195 (533)
T PRK14095 152 TTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFI-SNVDPDDAA 195 (533)
T ss_pred ceEEEEecCcchHhHHHHHHHHHhhccCCceEEEE-CCCCHHHHH
Confidence 4689999999 67777766444311 124344 377776654
No 469
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=34.67 E-value=1.1e+02 Score=31.78 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=57.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCc--eEEc-CCccCCCCCCCCCchHH-HHHH--H
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPEN--RLQI-GCDLTRGLGAGGNPSVG-MNAA--N 188 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~--ki~i-G~~~t~GlGaG~dP~vG-~~aA--~ 188 (430)
|||.++|.|..|+-.+..|+... |.+.+.++.+....+.... +. ++.+ |.. +....++ -.+. .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~--qglY~v~~~~~~-------~~~~~i~~v~~~~~~ 69 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNK--RKSYQVIVVGEN-------EQVETVSNVSAINSA 69 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhc--CCCeEEEEecCC-------CcEEEEeeEeeeCCC
Confidence 68999999999997788877663 4566667776655444321 22 2222 221 0111110 0111 1
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHH
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe 228 (430)
.. +++.+.+..+|+|.++++.. .=..+++.|++.+++
T Consensus 70 ~~-~~~~~~~~~~dlvt~~v~~~--~~~s~~~~l~~~L~~ 106 (381)
T PRK02318 70 DE-EAVIEAIAEADLVTTAVGPN--ILPFIAPLIAKGLKK 106 (381)
T ss_pred CH-HHHHHHhcCCCEEEeCCCcc--cchhHHHHHHHHHHH
Confidence 22 67777888999777766421 112567777776644
No 470
>PRK06270 homoserine dehydrogenase; Provisional
Probab=34.54 E-value=2.6e+02 Score=28.66 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHc
Q 014098 115 AKIKVIGVGGGGSNAVNRMIES 136 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~ 136 (430)
++|.|+|+|..|...++.+.++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 6899999999999999887665
No 471
>PRK06500 short chain dehydrogenase; Provisional
Probab=34.49 E-value=1.8e+02 Score=26.82 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCc-eEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPEN-RLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~-ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
+.++.|.|. |+.|..++.+|.+.+ .+++.+..+...+.... ..... .++.. + .|++ ....
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D--~-------~~~~----~~~~ 69 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG---ARVAITGRDPASLEAARAELGESALVIRAD--A-------GDVA----AQKA 69 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHhCCceEEEEec--C-------CCHH----HHHH
Confidence 457889986 888999999998874 56777766544433210 00011 11111 1 1221 2233
Q ss_pred hHHHHHHHhcCCCEEEEEccCCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
-.+.+.+.+...|.||-.||...
T Consensus 70 ~~~~~~~~~~~id~vi~~ag~~~ 92 (249)
T PRK06500 70 LAQALAEAFGRLDAVFINAGVAK 92 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCC
Confidence 34556666778999999997643
No 472
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=34.45 E-value=1.3e+02 Score=32.67 Aligned_cols=117 Identities=27% Similarity=0.420 Sum_probs=68.7
Q ss_pred CCCeEEEEeeCcchHH-HHHHHHHc--CCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 113 NEAKIKVIGVGGGGSN-AVNRMIES--SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~N-iV~~m~~~--~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
...||.+||-|..+-- .|.-.+.+ .++..+++.+|-|...|+.+...+ +|+ + +-.|+.-. -+
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~-~~~-v-----~~~g~~~k--------v~ 66 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILA-KKL-V-----EEAGAPVK--------VE 66 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHH-HHH-H-----HhhCCCeE--------EE
Confidence 3578999997766543 33333333 366789999999998887331100 000 0 00010000 01
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCC--------------------CCCCc-------HHHHHHHHHHc-------------
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGG--------------------TGTGA-------APVIAGIAKSM------------- 229 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGG--------------------TGTGa-------aPvIA~~AKe~------------- 229 (430)
.-...+++|+|||.|+...=.||= +|-|. .|+|.++|+.+
T Consensus 67 ~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNyt 146 (442)
T COG1486 67 ATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYT 146 (442)
T ss_pred EecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEecc
Confidence 122347899999999987755542 13232 79999999774
Q ss_pred --------------C-CcEEEEEeccCCch
Q 014098 230 --------------G-ILTVGIATVPFCFE 244 (430)
Q Consensus 230 --------------g-iltVaIVTlPF~fE 244 (430)
+ +.+||++=.|+..+
T Consensus 147 NP~~~vTeAv~r~~~~~K~VGlCh~~~g~~ 176 (442)
T COG1486 147 NPAAIVTEAVRRLYPKIKIVGLCHGPIGIA 176 (442)
T ss_pred ChHHHHHHHHHHhCCCCcEEeeCCchHHHH
Confidence 3 67888887777644
No 473
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=34.44 E-value=1e+02 Score=31.55 Aligned_cols=97 Identities=7% Similarity=0.080 Sum_probs=53.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
....++. +||-|+.++.+|.. |+. ..+.+|-|.-.+++.. ++...+. .| .+. . ++|.+..
T Consensus 74 L~~s~Vl---~GGLGs~va~~La~-GVg--~L~ivD~D~Ve~SNL~------~L~~~~d---iG---~~K-~-~~a~~~L 133 (318)
T TIGR03603 74 LKKSKVL---LGKFGANIAYNLCN-NVG--ALFISDKTYFQETAEI------DLYSKEF---IL---KKD-I-RDLTSNL 133 (318)
T ss_pred HhhCeee---cccchHHHHHHHhC-CCC--EEEEEcCCEechhhHH------HHhChhh---cC---cHH-H-HHHHHHH
Confidence 3344555 99999999999987 763 3456777665544321 2222110 11 111 1 1222222
Q ss_pred H---------HHHHHhcCCCEEEEEccCCCCCCCCcHH---HHHHHHHHcCCcEE
Q 014098 192 V---------AIEEAISGADMIFVTAGMGGGTGTGAAP---VIAGIAKSMGILTV 234 (430)
Q Consensus 192 e---------~I~~~L~gaD~VfI~AGLGGGTGTGaaP---vIA~~AKe~giltV 234 (430)
. .+.+.++++|+|+.++ ..=.++ .|-+.+.+.+++-|
T Consensus 134 ~~lnp~v~i~~~~~li~~~DlVid~t------Dn~~~r~L~~iN~ac~~~~~PlV 182 (318)
T TIGR03603 134 DALELTKNVDELKDLLKDYNYIIICT------EHSNISLLRGLNKLSKETKKPNT 182 (318)
T ss_pred HHhCCCCEEeeHHHHhCCCCEEEECC------CCccHhHHHHHHHHHHHHCCCEE
Confidence 2 2466778999988876 222333 35577788776654
No 474
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.37 E-value=1.1e+02 Score=33.68 Aligned_cols=139 Identities=14% Similarity=0.274 Sum_probs=89.3
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEec--cCCchhHHHHHHHHHHHHHHHHhhccc
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATV--PFCFEGRRRAIQAQEGVANLRNNVDTL 266 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTl--PF~fEG~~r~~~A~~gL~~L~~~vD~l 266 (430)
.+.+.+.++++..--+++++ |-||||=+-.+-.+++++.-...-|+|. |-.+. ..|+.++.
T Consensus 245 ~~~~~~~~~~~~p~GliLvT---GPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~--------~~gI~Q~q------ 307 (500)
T COG2804 245 FQLARLLRLLNRPQGLILVT---GPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ--------LPGINQVQ------ 307 (500)
T ss_pred HHHHHHHHHHhCCCeEEEEe---CCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee--------cCCcceee------
Confidence 45677888998888777775 5699999999999888876555556665 33221 11222111
Q ss_pred ccCccccccHHH-HHHHHhhcCeeEEEEEEecCCchHHHHHHHHHhCCCC--cCCccccCceEEEEEeCCCCCHHHHHHH
Q 014098 267 IIPGLVNVDFAD-VRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL--DIGIETATGIVWNITGGTDLTLFEVNTA 343 (430)
Q Consensus 267 I~pglINvDfaD-vk~Il~~~G~A~mGiG~a~G~~ra~~Av~~AL~sPLL--d~~i~~A~gvLvnI~gg~dl~L~Ev~~a 343 (430)
+.--+.++|+. +|++|+.- --+|-+|+-+...-|+-|++.|+.--|. ...-+.|.+++.=+.. -.+.-.++...
T Consensus 308 -VN~k~gltfa~~LRa~LRqD-PDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~ai~RL~~-mGv~~~~l~s~ 384 (500)
T COG2804 308 -VNPKIGLTFARALRAILRQD-PDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLE-MGVEPYLLASS 384 (500)
T ss_pred -cccccCCCHHHHHHHHhccC-CCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHHHHHHHHH-cCCCHHHHHHH
Confidence 22357899998 57777653 4578899999888899999999976554 2334556555543221 12444555555
Q ss_pred HHHH
Q 014098 344 AEVI 347 (430)
Q Consensus 344 ~~~I 347 (430)
+..|
T Consensus 385 l~gV 388 (500)
T COG2804 385 LLGV 388 (500)
T ss_pred HHHH
Confidence 5444
No 475
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.12 E-value=2.8e+02 Score=25.64 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=47.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC-----CCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP-----VIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~-----~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
.++.|.|. |+.|..++.+|.+++ .+.++++-+.+.+.... ......+..+ ++ .|++ ...
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-D~-------~~~~----~~~ 71 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG---WDLALVARSQDALEALAAELRSTGVKAAAYSI-DL-------SNPE----AIA 71 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEc-cC-------CCHH----HHH
Confidence 46888886 889999999999875 46666776554432210 0001112222 11 1232 122
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
...+++.+.....|+||-.||...
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~ 95 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAY 95 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccC
Confidence 334455556667999999987643
No 476
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=34.11 E-value=2.9e+02 Score=26.26 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=36.2
Q ss_pred hHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 181 SVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 181 ~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+=+.|+..-.+.|.+.+....-|+|+||-|..= |=+-++|+.+++.++.++.
T Consensus 25 ~LME~Ag~~va~~i~~~~~~~~~v~vl~G~GNNG--GDGlv~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 25 LLMENAGKAVAQAVLQAFPLAGHVIIFCGPGNNG--GDGFVVARHLKGFGVEVFL 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCc--cHHHHHHHHHHhCCCEEEE
Confidence 3456677777777777766566788888876333 4566899999887765433
No 477
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.08 E-value=1.1e+02 Score=31.12 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCCCCeEEEEeeCc-chHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHH
Q 014098 111 NNNEAKIKVIGVGG-GGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 111 ~~~~~kIkVIGVGG-aG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
+..+.++.|||-|. .|--++..|... +.....++...
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~---gatVtv~~s~t--------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQK---NASVTILHSRS--------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCc---------------------------------------
Confidence 35678999999999 888887777654 45555555321
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEEEecc
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaIVTlP 240 (430)
..+.+.++.+|+||.++|--+ .+-.++.|+ |..+|=|-+-|
T Consensus 193 --~~l~~~~~~ADIVIsAvg~p~-------~i~~~~vk~-gavVIDvGi~~ 233 (286)
T PRK14175 193 --KDMASYLKDADVIVSAVGKPG-------LVTKDVVKE-GAVIIDVGNTP 233 (286)
T ss_pred --hhHHHHHhhCCEEEECCCCCc-------ccCHHHcCC-CcEEEEcCCCc
Confidence 135678899999998875522 233344433 66666655433
No 478
>PRK08263 short chain dehydrogenase; Provisional
Probab=33.95 E-value=1.9e+02 Score=27.65 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=47.7
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhHH
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESKV 192 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~e 192 (430)
..+.|.| -|+.|..++.+|.+++ .+.+.+.-+.+.+.........++. +--+. .|++ ..++..+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~~~~~ 69 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERG---DRVVATARDTATLADLAEKYGDRLLPLALDV-------TDRA----AVFAAVE 69 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhccCCeeEEEccC-------CCHH----HHHHHHH
Confidence 4688888 4778999999998864 5566666555555321100011111 11111 1222 2233345
Q ss_pred HHHHHhcCCCEEEEEccCCC
Q 014098 193 AIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 193 ~I~~~L~gaD~VfI~AGLGG 212 (430)
.+.+.+...|.||.+||...
T Consensus 70 ~~~~~~~~~d~vi~~ag~~~ 89 (275)
T PRK08263 70 TAVEHFGRLDIVVNNAGYGL 89 (275)
T ss_pred HHHHHcCCCCEEEECCCCcc
Confidence 55666778999999998753
No 479
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=33.92 E-value=76 Score=33.50 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
...+.++.|||+|..|..++.++... |.+.++.|
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 45678999999999999999998765 56777765
No 480
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=33.90 E-value=1.3e+02 Score=30.92 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=21.0
Q ss_pred CCCCCCCCcHHHHHHHHHHcCCcE
Q 014098 210 MGGGTGTGAAPVIAGIAKSMGILT 233 (430)
Q Consensus 210 LGGGTGTGaaPvIA~~AKe~gilt 233 (430)
++|.+|+|-+++..++|+.+|..+
T Consensus 97 I~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCE
Confidence 578899999999999999998874
No 481
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=33.88 E-value=3.4e+02 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=9.7
Q ss_pred cCCCEEEEEccCC
Q 014098 199 SGADMIFVTAGMG 211 (430)
Q Consensus 199 ~gaD~VfI~AGLG 211 (430)
...|+|||..|+=
T Consensus 66 ~~~d~vii~~G~N 78 (185)
T cd01832 66 LRPDLVTLLAGGN 78 (185)
T ss_pred cCCCEEEEecccc
Confidence 4788888877654
No 482
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=33.74 E-value=1.2e+02 Score=36.82 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=58.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhHHHH
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAI 194 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~e~I 194 (430)
.||+|+|-|..+..++..+.+. |++.+++++|..........++..+.++..... . ...+.+.|
T Consensus 2 ~kvLI~g~Geia~~iiraak~l---Gi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~-----~--------sy~d~e~I 65 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRM---GIRSVAVYSDADAASQHVLDADEAVCLGGAPAA-----E--------SYLDIDKI 65 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHc---CCeEEEEECCCCCCccchhhCCEEEEcCCCCcc-----c--------CCCCHHHH
Confidence 4899999999999999999886 677888888765432211124677777642100 0 01234555
Q ss_pred HHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 195 EEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 195 ~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
.+..+ ++|.|+. |.| -=+-- ..+++.+.+.|+..++
T Consensus 66 l~~a~~~~idaIiP--G~g--flsE~-~~~a~~~e~~Gi~~iG 103 (1201)
T TIGR02712 66 LAAAKKTGAQAIHP--GYG--FLSEN-AAFAEACEAAGIVFVG 103 (1201)
T ss_pred HHHHHHHCCCEEEe--CCc--ccccC-HHHHHHHHHcCCcEEC
Confidence 55554 5666654 321 10111 2456777777866554
No 483
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=33.72 E-value=1.4e+02 Score=29.28 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC--cHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHH
Q 014098 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT--DAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMN 185 (430)
Q Consensus 108 ~~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT--D~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~ 185 (430)
.+-..++.++.|||-|..+.+=+..|++.+. .+..++-.. +.+.|.. ..++.+-+.. .
T Consensus 19 i~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~-----~~~i~~~~r~---------~----- 78 (223)
T PRK05562 19 ISLLSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKK-----YGNLKLIKGN---------Y----- 78 (223)
T ss_pred eEEECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHh-----CCCEEEEeCC---------C-----
Confidence 3344567799999999999998999988752 244443232 2333322 1223222110 0
Q ss_pred HHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 186 aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+ ..-|+++++||.+++ -.-.-..|++.|++.++++..+
T Consensus 79 ---~-----~~dl~g~~LViaATd-----D~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 79 ---D-----KEFIKDKHLIVIATD-----DEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred ---C-----hHHhCCCcEEEECCC-----CHHHHHHHHHHHHHcCCeEEEc
Confidence 0 112567777777643 2245566777777776665433
No 484
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=33.48 E-value=67 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 014098 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (430)
Q Consensus 112 ~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNT 148 (430)
....++.|+|.|..|..++.++.+.+. -+.+..|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~--~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG--KKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 445689999999999999999988753 34444454
No 485
>PRK05717 oxidoreductase; Validated
Probab=33.42 E-value=2.1e+02 Score=26.94 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=46.2
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+.++.|.|. |+.|..++.+|.+.+ .+.+.++.+...+.........++. +--++ .|++ ...+..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~~----~~~~~~ 75 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG---WQVVLADLDRERGSKVAKALGENAWFIAMDV-------ADEA----QVAAGV 75 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHHcCCceEEEEccC-------CCHH----HHHHHH
Confidence 457999997 788999999998874 5666665443322211000011111 11111 1222 222334
Q ss_pred HHHHHHhcCCCEEEEEccCCC
Q 014098 192 VAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGG 212 (430)
+++.+.+...|+||-.||...
T Consensus 76 ~~~~~~~g~id~li~~ag~~~ 96 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIAD 96 (255)
T ss_pred HHHHHHhCCCCEEEECCCccc
Confidence 455555667899999997654
No 486
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=33.30 E-value=72 Score=30.23 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=27.4
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 115 ~kIkVIG-VGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
+||.||| .|..|..++..|.+.+ .+.+..+-+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~~~~~ 37 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRDLEKA 37 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcCHHHH
Confidence 5899997 8999999999998875 4445556655544
No 487
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=33.14 E-value=90 Score=31.22 Aligned_cols=47 Identities=30% Similarity=0.495 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHhHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCc--EEEEE
Q 014098 178 GNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL--TVGIA 237 (430)
Q Consensus 178 ~dP~vG~~aA~e~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~gil--tVaIV 237 (430)
.||..++++|+.- .. +++|+||-+||. + .+-+.+.|++.|.. +|++-
T Consensus 172 ~D~~~~~~~a~~l----i~--~GaDvI~~~ag~---~----~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 172 NDPAKAKEAAEAL----ID--QGADVIFPVAGG---S----GQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp S-HHHHHHHHHHH----HH--TT-SEEEEE-CC---C----HHHHHHHHHHHTHETEEEEEE
T ss_pred CchHHHHHHHHHH----hh--cCCeEEEECCCC---C----chHHHHHHHHcCCceEEEEec
Confidence 6898888887642 12 899999987653 3 45567888999988 99984
No 488
>PRK07478 short chain dehydrogenase; Provisional
Probab=33.07 E-value=2.8e+02 Score=25.94 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=47.6
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CC-CCceE-EcCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~-a~~ki-~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++.|.|. ||.|..++.+|.+.+ .+.+.+..+...+.... .. ...++ .+-.++ .|++ ..+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~ 71 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREG---AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDV-------RDEA----YAK 71 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-------CCHH----HHH
Confidence 347888886 567999999998864 56666665555443210 00 00011 111111 1332 223
Q ss_pred HhHHHHHHHhcCCCEEEEEccCCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMGG 212 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLGG 212 (430)
+-.+++.+.....|.||..||..+
T Consensus 72 ~~~~~~~~~~~~id~li~~ag~~~ 95 (254)
T PRK07478 72 ALVALAVERFGGLDIAFNNAGTLG 95 (254)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCC
Confidence 334455555668999999998754
No 489
>PRK07340 ornithine cyclodeaminase; Validated
Probab=32.96 E-value=1.1e+02 Score=30.90 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHH-cCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGVGGGGSNAVNRMIE-SSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGVGGaG~NiV~~m~~-~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+..++.|||.|+.|.-.+..+.. .+++ +..+.|-+........ .++ ... +. . +. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~--~v~v~~r~~~~a~~~a----~~~--~~~---~~------~----~~---~ 179 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVR--RVWVRGRTAASAAAFC----AHA--RAL---GP------T----AE---P 179 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHH----HHH--Hhc---CC------e----eE---E
Confidence 45689999999999999998865 3333 3455565544332210 011 000 00 0 00 1
Q ss_pred HHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEEE
Q 014098 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVaI 236 (430)
+.+.+++.++|+|+.+..-. .|++-... +-|..+.+|
T Consensus 180 ~~~~~av~~aDiVitaT~s~-------~Pl~~~~~-~~g~hi~~i 216 (304)
T PRK07340 180 LDGEAIPEAVDLVVTATTSR-------TPVYPEAA-RAGRLVVAV 216 (304)
T ss_pred CCHHHHhhcCCEEEEccCCC-------CceeCccC-CCCCEEEec
Confidence 33566778999999875521 37775432 356666666
No 490
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=32.93 E-value=38 Score=35.86 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=29.1
Q ss_pred cccccCCCCCCCCCCCeEEEEeeCcchHHHHHHHHHcCCC
Q 014098 100 SESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMT 139 (430)
Q Consensus 100 ~~~~~~~~~~~~~~~~kIkVIGVGGaG~NiV~~m~~~~~~ 139 (430)
.+.++.. -+.+..+..+.|||.||-||-++.+|...++-
T Consensus 53 lpe~gV~-GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG 91 (427)
T KOG2017|consen 53 LPEFGVH-GQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVG 91 (427)
T ss_pred ccccccc-cccccCCccEEEEccCCCCCHHHHHHHHcCCC
Confidence 3444422 34455567899999999999999999998753
No 491
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.90 E-value=1.6e+02 Score=35.08 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=54.2
Q ss_pred CCCeEEEEeeCcc--h---------HHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCch
Q 014098 113 NEAKIKVIGVGGG--G---------SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPS 181 (430)
Q Consensus 113 ~~~kIkVIGVGGa--G---------~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~ 181 (430)
++.||.|+|.|.. | ..++..|.+. |.+.+.+|.+........-.+ .++.+- |
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~---G~~vI~vn~npetvs~~~~~a-D~~y~e------------p- 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE---GYETIMINNNPETVSTDYDTA-DRLYFE------------P- 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc---CCEEEEEeCCccccccccccC-ceEEEc------------c-
Confidence 4679999999863 2 2345555544 789999999987643321111 233331 2
Q ss_pred HHHHHHHHhHHHHHHHhc--CCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEEE
Q 014098 182 VGMNAANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (430)
Q Consensus 182 vG~~aA~e~~e~I~~~L~--gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltVa 235 (430)
...+.|.+.++ +.|.|+. ++||-| +..+++.+.+.|+.+++
T Consensus 617 -------~~~e~vl~I~~~e~~dgVI~--~~g~~~----~~~la~~le~~Gi~ilG 659 (1068)
T PRK12815 617 -------LTLEDVLNVAEAENIKGVIV--QFGGQT----AINLAKGLEEAGLTILG 659 (1068)
T ss_pred -------CCHHHHHHHHhhcCCCEEEE--ecCcHH----HHHHHHHHHHCCCeEEC
Confidence 12445555553 6787766 445443 34556666777876554
No 492
>PRK06932 glycerate dehydrogenase; Provisional
Probab=32.85 E-value=62 Score=32.91 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 014098 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (430)
Q Consensus 111 ~~~~~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiN 147 (430)
...+.++.|||.|..|..++.++... |.+.++++
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcC---CCEEEEEC
Confidence 56778999999999999999887544 45666654
No 493
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.71 E-value=2.1e+02 Score=26.12 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhc----CCCCCCceEEcCCccCCCCCCCCCchHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV----SPVIPENRLQIGCDLTRGLGAGGNPSVGMNAAN 188 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~----s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~ 188 (430)
..++.|.|. |+.|..++.+|.++ |..+++++.|.+.+.. ... ....+.. .+. .|++ ..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~-~D~-------~~~~----~~~ 70 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR---GARVALIGRGAAPLSQTLPGVPA-DALRIGG-IDL-------VDPQ----AAR 70 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC---CCeEEEEeCChHhHHHHHHHHhh-cCceEEE-eec-------CCHH----HHH
Confidence 457999986 88899999999887 4567777665443221 100 0011111 111 1221 223
Q ss_pred HhHHHHHHHhcCCCEEEEEccCC
Q 014098 189 ESKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 189 e~~e~I~~~L~gaD~VfI~AGLG 211 (430)
+..+++.+.....|.||-.+|..
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 71 RAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHHHHHhCCcCEEEECCccc
Confidence 34555566667899999988764
No 494
>PRK11142 ribokinase; Provisional
Probab=32.57 E-value=3.3e+02 Score=26.40 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCCEEEEEccCCCCCCCCcHHHHHHHHHHcCCcEE
Q 014098 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~giltV 234 (430)
..+.+.+.++++|++++.. .+.......+++.||+.|++++
T Consensus 122 ~~~~~~~~l~~~~~v~~~~----~~~~~~~~~~~~~a~~~g~~v~ 162 (306)
T PRK11142 122 LVEAHRELIANADALLMQL----ETPLETVLAAAKIAKQHGTKVI 162 (306)
T ss_pred HHHHHHhhhccCCEEEEeC----CCCHHHHHHHHHHHHHcCCEEE
Confidence 3444556789999888752 2222455667788888888754
No 495
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=32.56 E-value=3e+02 Score=25.93 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEEcCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 113 ~~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
.+..+.|.|. |+.|..++.+|.+. |.+.+.++.+...+... +-..+--++ .|+ +..++-.
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~---G~~v~~~~~~~~~~~~~-----~~~~~~~D~-------~~~----~~~~~~~ 68 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLAN---GANVVNADIHGGDGQHE-----NYQFVPTDV-------SSA----EEVNHTV 68 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCccccccC-----ceEEEEccC-------CCH----HHHHHHH
Confidence 3457888885 68899999999886 45666665544333211 111111111 122 2233344
Q ss_pred HHHHHHhcCCCEEEEEccCC
Q 014098 192 VAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLG 211 (430)
+++.+.+...|.||-+||..
T Consensus 69 ~~~~~~~g~id~li~~Ag~~ 88 (266)
T PRK06171 69 AEIIEKFGRIDGLVNNAGIN 88 (266)
T ss_pred HHHHHHcCCCCEEEECCccc
Confidence 45555667889999998864
No 496
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=32.54 E-value=68 Score=34.73 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=29.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHhh
Q 014098 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (430)
Q Consensus 115 ~kIkVIGVGGaG~NiV~~m~~~~~~gve~iaiNTD~q~L 153 (430)
.+|.|||+|-.|.+++.+|.+++ .+..+.|-+.+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr~~~~~ 37 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNRTYEKT 37 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeCCHHHH
Confidence 47999999999999999999875 5677778776654
No 497
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=32.41 E-value=52 Score=28.08 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=32.9
Q ss_pred HHHHHHHh---cCCCEEEEEccCCCCCCCCcHHHHHHHHHHc-CCcEEEEEeccCCchhH
Q 014098 191 KVAIEEAI---SGADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGR 246 (430)
Q Consensus 191 ~e~I~~~L---~gaD~VfI~AGLGGGTGTGaaPvIA~~AKe~-giltVaIVTlPF~fEG~ 246 (430)
.+++++.+ ...|-++|++-|+|||-.. ..++...+. .+.+|+-+.+|.-.|--
T Consensus 44 ~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n---~a~~~~~~~~~~~vi~G~Nlpmlle~~ 100 (116)
T PF03610_consen 44 EEKLEEAIEELDEGDGVLILTDLGGGSPFN---EAARLLLDKPNIRVISGVNLPMLLEAL 100 (116)
T ss_dssp HHHHHHHHHHCCTTSEEEEEESSTTSHHHH---HHHHHHCTSTTEEEEES--HHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEeeCCCCccch---HHHHHhccCCCEEEEecccHHHHHHHH
Confidence 44444444 6789999999999987322 223333333 45688888899987654
No 498
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.33 E-value=1.6e+02 Score=27.92 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=47.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCceEE-cCCccCCCCCCCCCchHHHHHHHHh
Q 014098 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANES 190 (430)
Q Consensus 115 ~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~ 190 (430)
+++.|.|. ||.|..++.+|.+. |.+++.+.-+...+.... +....+++ +--+. .|++ ..++-
T Consensus 1 m~vlItGas~gIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv-------~d~~----~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK---GARVVISSRNEENLEKALKELKEYGEVYAVKADL-------SDKD----DLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCC-------CCHH----HHHHH
Confidence 46888886 66888899999886 456666666655443210 00000111 11111 1332 23334
Q ss_pred HHHHHHHhcCCCEEEEEccCC
Q 014098 191 KVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 191 ~e~I~~~L~gaD~VfI~AGLG 211 (430)
.+++.+.+...|+||-.||..
T Consensus 67 ~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 67 VKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 455556667899999998864
No 499
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=32.32 E-value=1.7e+02 Score=27.62 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCCCCCCceEE-cCCccCCCCCCCCCchHHHHHHHHhH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANESK 191 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e~~ 191 (430)
+.++.|.|. ||.|..++.+|.+. |.+.+.++-+.+.++........++. +-.++ .|++ ..++..
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~~~~ 71 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE---GARVAVLERSAEKLASLRQRFGDHVLVVEGDV-------TSYA----DNQRAV 71 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhCCcceEEEccC-------CCHH----HHHHHH
Confidence 457888887 67899999999886 45666666665544332100011111 11111 1222 233344
Q ss_pred HHHHHHhcCCCEEEEEccCC
Q 014098 192 VAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 192 e~I~~~L~gaD~VfI~AGLG 211 (430)
+++.+.+...|.+|-.||..
T Consensus 72 ~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 72 DQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHHHhcCCCCEEEECCCCc
Confidence 45555567889999998863
No 500
>PRK06138 short chain dehydrogenase; Provisional
Probab=32.29 E-value=2e+02 Score=26.67 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHhhhcCC--CCCCceEE-cCCccCCCCCCCCCchHHHHHHHH
Q 014098 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCDLTRGLGAGGNPSVGMNAANE 189 (430)
Q Consensus 114 ~~kIkVIGV-GGaG~NiV~~m~~~~~~gve~iaiNTD~q~L~~s~--~~a~~ki~-iG~~~t~GlGaG~dP~vG~~aA~e 189 (430)
+.++.|.|. |+.|..++.+|.+. |.+++.+..+.+.+.... .....++. +--++ .|++ ..++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~~~~ 70 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE---GARVVVADRDAEAAERVAAAIAAGGRAFARQGDV-------GSAE----AVEA 70 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC---CCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCC-------CCHH----HHHH
Confidence 347888887 78899999999886 456666665544332210 00011111 11111 2332 2333
Q ss_pred hHHHHHHHhcCCCEEEEEccCC
Q 014098 190 SKVAIEEAISGADMIFVTAGMG 211 (430)
Q Consensus 190 ~~e~I~~~L~gaD~VfI~AGLG 211 (430)
..+++.+.+...|.||-++|..
T Consensus 71 ~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 71 LVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 4455666667899999998864
Done!