RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014098
(430 letters)
>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
Length = 384
Score = 437 bits (1126), Expect = e-152
Identities = 170/376 (45%), Positives = 219/376 (58%), Gaps = 65/376 (17%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
N A IKVIGVGGGG NAVNRMIE + GVEF NTDAQA+ S ++Q+G
Sbjct: 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKA--PVKIQLGEK 66
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAG NP VG AA ES+ I EA+ GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 67 LTRGLGAGANPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKEL 126
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII--------------------- 268
GILTV + T PF FEG++R QA+EG+ LR +VDTLI+
Sbjct: 127 GILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFK 186
Query: 269 -------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNA 309
PGL+N+DFADV+ +M + G ++MGIG A+G+ RAR+AA A
Sbjct: 187 AADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLAMMGIGEASGEDRAREAAEKA 246
Query: 310 IQSPLLD-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS 368
I SPLL+ + I A G++ NITGG DLTLFEV AAE+I + DP AN+IFG VID+ L
Sbjct: 247 ISSPLLEDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELG 306
Query: 369 NQVSITLIATGFKGDKL----------------EGKGTHLSHNDVSLGMSRRSSNSGSGS 412
+++ +T+IATGF + + S+ + S
Sbjct: 307 DEIRVTVIATGFGRQAVVPEKQEQQPVETRTDEAPVAPLPQEPQAVAEPAEASAAVEAQS 366
Query: 413 ------VEIPEFLRQR 422
++IP FLR++
Sbjct: 367 EKDEDDLDIPAFLRRQ 382
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 304
Score = 393 bits (1013), Expect = e-136
Identities = 168/306 (54%), Positives = 210/306 (68%), Gaps = 43/306 (14%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGL 174
AKIKVIGVGGGG NAVNRMIES + GVEF NTDAQA+ S N++Q+G +LTRGL
Sbjct: 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKA--PNKIQLGKELTRGL 58
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAGG+P VG AA ES+ I+EA+ GADM+F+TAGMGGGTGTGAAPVIA IAK MG LTV
Sbjct: 59 GAGGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTV 118
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII-------------------------- 268
+ T PF FEG++R QA+EG+ LR +VDTLI+
Sbjct: 119 AVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFKLADDV 178
Query: 269 --------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPL 314
PGL+N+DFADV+ +MK+ G +LMGIG A+G++RA +AA AI SPL
Sbjct: 179 LAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPL 238
Query: 315 LD-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSI 373
L+ I A G++ NITGG+DLTL EVN AAE+I + VDP AN+IFGA ID+SL +++ +
Sbjct: 239 LEDDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRV 298
Query: 374 TLIATG 379
T+IATG
Sbjct: 299 TVIATG 304
>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional.
Length = 378
Score = 345 bits (888), Expect = e-117
Identities = 146/376 (38%), Positives = 204/376 (54%), Gaps = 42/376 (11%)
Query: 92 KEGLGKSVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
KE L S E + + ++ KI V+G GG G+N +NR+ E + G E +NTDAQ
Sbjct: 6 KEALIDSEQEKEEKKASDDDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ 65
Query: 152 AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
+ + + ++ IG LTRGLGAGG+P VG AA ES+ I+E + GAD++FVTAGMG
Sbjct: 66 HLAMIKA--DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLKGADLVFVTAGMG 123
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII--- 268
GGTGTGAAPV+A IAK G L VG+ T PF FEGR R +A+EG+ LR DT+I+
Sbjct: 124 GGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDN 183
Query: 269 ------------------------------------PGLVNVDFADVRAIMKDAGSSLMG 292
P L+N+DFADV+++MK G ++MG
Sbjct: 184 NRLLDIVPNLPIADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVAMMG 243
Query: 293 IGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVD 352
+G A G++RA +A A+ +PLLD+ A G + +ITGG DLTL E N AA I + +D
Sbjct: 244 VGEAKGQNRAMEAVRAALANPLLDVDYRGAKGALVHITGGPDLTLKEANEAASRITEELD 303
Query: 353 PSANLIFGAVIDKSLSNQVSITLIATGFKGDKLEGKGTHLSHNDVSLGMSRRSSNSGSGS 412
P AN+I+GA ID + +V + +I TG K ++ G GT +S RS
Sbjct: 304 PEANIIWGARIDPDMEGKVRVMVIMTGVKSAQILGPGTQ-PQAIISRRSGERSRGKDELG 362
Query: 413 VEIPEFLRQRPHIYHP 428
++ +
Sbjct: 363 IDSIVAHQAGLSFPSR 378
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 337 bits (867), Expect = e-114
Identities = 153/334 (45%), Positives = 203/334 (60%), Gaps = 47/334 (14%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
+N+AKIKVIGVGGGG+N VNRM+E + GVEF +NTDAQ +K + + ++ IG
Sbjct: 13 QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKA--DKKILIGKK 70
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAGGNP +G AA ES+ I + + GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 71 LTRGLGAGGNPEIGRKAAEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKEL 130
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII--------------------- 268
G LTV + T PF FEG +R +A+EG+ L+ VDTLI+
Sbjct: 131 GALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPNLPLNDAFKV 190
Query: 269 ------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKS---RARDAAL 307
PGL+N+DFADVRA+M G ++MGIG A G+ RA +A
Sbjct: 191 ADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEALGEDTANRAFEAVR 250
Query: 308 NAIQSPLLD-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKS 366
A+ SPLLD I A G + +ITGG DLTL E E+I +D AN+I+GA+ID +
Sbjct: 251 KALSSPLLDVDKISGAKGALVHITGGADLTLLEAEEIQEIITSELDQDANIIWGAIIDPN 310
Query: 367 LSNQVSITLIATGFKGDKLEGKGTHLSHNDVSLG 400
L +++ +T++ATG K G+ S + VSL
Sbjct: 311 LEDEIRVTIVATGVKSQI--FFGSEKSKDTVSLP 342
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 319 bits (820), Expect = e-107
Identities = 164/320 (51%), Positives = 201/320 (62%), Gaps = 42/320 (13%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
P + +A+IKVIGVGG G NAVNRMIE + GVEF +NTDAQA+K S + ++ IG
Sbjct: 6 PEESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKA--DRKILIGE 63
Query: 169 DLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
+TRGLGAG NP VG AA ES IEEA+ GADM+FVTAGMGGGTGTGAAPV+A IAK
Sbjct: 64 SITRGLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKE 123
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII-------------------- 268
+G LTV + T+PF FEG R A+EG+ LR VDTLI+
Sbjct: 124 LGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFN 183
Query: 269 -------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNA 309
PGLVNVDFADVR +MK G +LMGIG A+G+ RAR+A A
Sbjct: 184 EADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKA 243
Query: 310 IQSPLLDIG-IETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS 368
+ SPLLD IE A G + NITGG DLTL EV A E I +++DP A++I+GA ID L
Sbjct: 244 LNSPLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLR 303
Query: 369 NQVSITLIATGFKGDKLEGK 388
++V + +IATG + GK
Sbjct: 304 DEVRVLVIATGIRSSIALGK 323
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 233 bits (595), Expect = 6e-74
Identities = 110/305 (36%), Positives = 153/305 (50%), Gaps = 42/305 (13%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGL 174
AKI VIG GG G N V++ +E G VNTDAQ + + ENR+ IG T+GL
Sbjct: 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLL--GLEAENRVLIGQARTKGL 58
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG NP +G AA E + AI+ DM+F+TAG+GGGTGTG APV+A K +G LTV
Sbjct: 59 GAGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTV 118
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI--------------------------- 267
+ T+PF EG R + A EG L VD L+
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEKASLEGAFDHADEVL 178
Query: 268 ------------IPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL 315
I G +NVDFADV+ +M G +++G G+ +RA +A A PLL
Sbjct: 179 VRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLL 238
Query: 316 D-IGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSIT 374
IE A G + + G DL L E+ + + + SA + G ID + ++V+++
Sbjct: 239 LPCEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVS 298
Query: 375 LIATG 379
++ TG
Sbjct: 299 IVLTG 303
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 197 bits (504), Expect = 1e-61
Identities = 83/153 (54%), Positives = 101/153 (66%), Gaps = 3/153 (1%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLG 175
KIKV GVGGGG NAVN +E ++ NTDAQA+ + ++Q G + TRGLG
Sbjct: 1 KIKVFGVGGGGPNAVNVDLEP--GVIDGVRANTDAQALNPESLAS-GKIQAGNNWTRGLG 57
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AG +P VG AA ES I E + GAD +F+TAGMGGGTGTGAAPVIA IAK GILTV
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVA 117
Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268
+ T PF FEG R A+ G+ LR +VD+LI+
Sbjct: 118 VVTKPFSFEGVVRPYNAELGLEELREHVDSLIV 150
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 132 bits (335), Expect = 1e-37
Identities = 57/112 (50%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLD-IGIETATGIVWNIT 330
+NVDFADV+ +M G ++MGIG A+G++RA +AA AI SPLL+ I A G++ NIT
Sbjct: 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEDSNIMGAKGVLVNIT 60
Query: 331 GGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS-NQVSITLIATGFK 381
GG DLTL EVN A E I + DP A +I+G VID+ L +++ +T+IATG
Sbjct: 61 GGPDLTLKEVNEAMERIREKADPDAFIIWGPVIDEELGGDEIRVTVIATGIG 112
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 131 bits (332), Expect = 4e-36
Identities = 71/189 (37%), Positives = 93/189 (49%), Gaps = 39/189 (20%)
Query: 117 IKVIGVGGGGSNAVNRMIE----------------------------SSMTGVEFWIVNT 148
I VIGVGG G+N N + E + G F ++T
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDT 60
Query: 149 DAQAMKVSPVIPENRLQIGCDLTRGL-GAGGNPSVGMN----AANESKVAIEEAI---SG 200
D Q + N+L IG +LT+GL GAG NP+VG AA ES I + + G
Sbjct: 61 DPQVLNEIKAG--NKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDG 118
Query: 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANL 259
D F+TAG+GGGTG+GAAPVIA I K + G LTV + T PF EG R A G+ L
Sbjct: 119 LDGFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKEL 178
Query: 260 RNNVDTLII 268
+ D++I+
Sbjct: 179 IEHSDSVIV 187
>gnl|CDD|204882 pfam12327, FtsZ_C, FtsZ family, C-terminal domain. This family
includes the bacterial FtsZ family of proteins. Members
of this family are involved in polymer formation. FtsZ
is the polymer-forming protein of bacterial cell
division. It is part of a ring in the middle of the
dividing cell that is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ is a GTPase, like tubulin. FtsZ can polymerise into
tubes, sheets, and rings in vitro and is ubiquitous in
eubacteria and archaea.
Length = 95
Score = 126 bits (318), Expect = 2e-35
Identities = 49/95 (51%), Positives = 65/95 (68%)
Query: 287 GSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEV 346
G ++MG G A+G+ RA +AA AI SPLLD+ + A G++ NITGG DLTL E AAE
Sbjct: 1 GVAMMGTGEASGEDRAEEAAEAAISSPLLDVDLSGARGVLVNITGGPDLTLEEAEEAAER 60
Query: 347 IYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFK 381
I + VDP AN+IFGA ID L ++ +T++ATG
Sbjct: 61 IREEVDPDANIIFGASIDPELEGEIRVTVVATGID 95
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 80.5 bits (199), Expect = 1e-16
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVSPVIP-ENRLQIGCD 169
++ +IGVG G V+ + V +NT +K IP E+R+ IG
Sbjct: 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQS 61
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAI-----SGADMIFVTAGMGGGTGTGAAPVIAG 224
+G G G + +G A E + AI S AD I V AG+GGGTG+G APV+A
Sbjct: 62 EVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121
Query: 225 IAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267
K + +P EG R + A + L D +I
Sbjct: 122 ELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAII 165
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 60.5 bits (147), Expect = 4e-10
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFW----IVNTDAQAMKVSPVIP-ENRLQIGCDL 170
+I I +G G+ G +FW +V+T+ + + P IG +
Sbjct: 1 EIVTIQLGQAGNQ----------IGAKFWEQLVLVDTEPGVIDETLSGPYRLLFCIGQLI 50
Query: 171 TRGLGAGGNPSVGMNAANESKV-AIEEAI-------SGADMIFVTAGMGGGTGTGAAPVI 222
T G GAG N + G A E I + I F+T +GGGTG+G PV+
Sbjct: 51 THGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVL 110
Query: 223 AGIAKSM--GILTVGIATVPFCFEGRR-RAIQAQEGVANLRNNVDTL 266
A K L + + +P EG R + + L + D L
Sbjct: 111 AERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCL 157
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 32.9 bits (76), Expect = 0.34
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 186 AANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF 243
A + I ++ GAD I + G GGT GAAP+ +G+ T
Sbjct: 222 VAGHGEGDIAAGVAAAGADFITI-DGAEGGT--GAAPLT--FIDHVGLPTE--------- 267
Query: 244 EGRRRAIQAQEGVANLRNNVDTLIIPG 270
G RA QA LR+ V +LI G
Sbjct: 268 LGLARAHQALVK-NGLRDRV-SLIASG 292
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 32.7 bits (75), Expect = 0.36
Identities = 35/163 (21%), Positives = 50/163 (30%), Gaps = 64/163 (39%)
Query: 119 VIGVGGGGSN---AVNRMIESSMTG------VEFWIVNTDAQAM------------KVSP 157
+IG+GG GS+ + RMI G V F V+TD M +
Sbjct: 2 IIGLGGTGSDVLRRLRRMIVERYGGLENPPIVSFLYVDTDKNEMGESDKNSKGLGISLKE 61
Query: 158 VIPENRLQIGCDLTRGL--------------------------GAGGNPSVG----MNAA 187
+L + L GAG +VG +
Sbjct: 62 SEKIYAFVTSENLAKILDRLELYPHIAEWFPPELVENITSIEAGAGQIRAVGRLAFFHNY 121
Query: 188 NESKVAIEEAI-------------SGADMIFVTAGMGGGTGTG 217
+ AIE A+ G +FV + GGTG+G
Sbjct: 122 QAIRQAIETALKRTFLLSEGQKVGEGGVNVFVVGSLSGGTGSG 164
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 32.4 bits (74), Expect = 0.46
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 175 GAGGNPSVG-MNAANESKVAIEEAISGA----DMI---FVTAGMGGGTGTG 217
GAG N +VG M ++ +I E++ D + F+ +GGGTG+G
Sbjct: 97 GAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSG 147
>gnl|CDD|145385 pfam02200, STE, STE like transcription factor.
Length = 110
Score = 30.1 bits (68), Expect = 0.69
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 28 VKILDYRSDSWGACPRNVKDF-------LR-LKCSAKAHNVSPNHSKDPFLDL 72
V+ L +R ++G +N K F LR LK A P K PFLD
Sbjct: 32 VRCLSFRFQAFGRPVKNKKKFEEGIFSDLRNLKPGIDATLEEP---KSPFLDF 81
>gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal
catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate
aldolase (Also known as 4-hydroxy-2-ketovalerate
aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA))
converts 4-hydroxy-2-oxopentanoate to acetaldehyde and
pyruvate, the penultimate step in the meta-cleavage
pathway for the degradation of phenols, cresols and
catechol. This family includes the Escherichia coli
MhpE aldolase, the Pseudomonas DmpG aldolase, and the
Burkholderia xenovorans BphI pyruvate aldolase. In
Pseudomonas, the DmpG aldolase tightly associates with a
dehydrogenase (DmpF ) and is inactive without it. HOA
has a canonical TIM-barrel fold with a C-terminal
extension that forms a funnel leading to the active
site. This family belongs to the DRE-TIM metallolyase
superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 263
Score = 31.3 bits (72), Expect = 0.75
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
G+ AN S A+E GA I + AG+G G G V+ + + MGI T
Sbjct: 197 GLAVAN-SLAAVEA---GATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIET 244
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 31.8 bits (73), Expect = 0.76
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQ 251
+A A +GAD+I + G G GTGA+P+ + I GI G Q
Sbjct: 319 IAAGVAKAGADVITI-DGADG--GTGASPLTS-------IDHAGIPW----ELGLAETHQ 364
Query: 252 AQEGVANLRNNVDTLIIPGLVNVDFADV-RAIMKDAGSSLMGIGTA 296
LR+ V + GL DV +A G+ +G GTA
Sbjct: 365 TLVLN-GLRDKVKLIADGGLRTGA--DVAKAAA--LGADAVGFGTA 405
>gnl|CDD|203423 pfam06305, DUF1049, Protein of unknown function (DUF1049). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 68
Score = 28.3 bits (64), Expect = 1.3
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTL 266
G ++ IA ++G L + ++PF RRR + ++ + L ++ L
Sbjct: 13 FAQGEFPLSLLLLIAFALGFLLGWLLSLPFYLRLRRRLRRLKKQLKKLEKELEEL 67
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 30.3 bits (69), Expect = 1.9
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 171 TRGLGAGGNPSVGM----------NAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAP 220
GLG G PS G+ AA AI+ AI AG G G
Sbjct: 144 GCGLG-GVAPSWGLIGGIAVNAWKKAA--LAAAIKAAIKAG----AAAGEAAGIAAGKKA 196
Query: 221 VIAGIAKSMGILTVGIATVP 240
VI G+ GI T+G +
Sbjct: 197 VIEGLKSIFGISTLGGKDLK 216
>gnl|CDD|182152 PRK09932, PRK09932, glycerate kinase II; Provisional.
Length = 381
Score = 30.3 bits (68), Expect = 2.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 192 VAIEEAISGADMIFVTAG-MGGGTGTGAAPV-IAGIAKSMGILTVGIATV 239
V +E+A+ GA ++ G + T G AP+ +A +AK + +GIA V
Sbjct: 276 VNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 30.0 bits (67), Expect = 2.5
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 114 EAKIKVIGVGGGGS-NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTR 172
+ I V GVG GG+ V + ++ ++ +V S V+ Q G L +
Sbjct: 174 KVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVE-----SAVLSGG--QPGPHLIQ 226
Query: 173 GLGAGGNP-SVGMNAANES-KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA 223
G+G+G P ++ + +E +V EEAI A ++ + G+ G +GAA A
Sbjct: 227 GIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAA 279
>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase.
Members of this protein family are
4-hydroxy-2-oxovalerate aldolase, also called
4-hydroxy-2-ketovalerate aldolase and
2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of
the pathway for the meta-cleavage of catechol, produces
pyruvate and acetaldehyde. Acetaldehyde is then
converted by acetaldehyde dehydrogenase (acylating)
(DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are
tightly associated [Energy metabolism, Other].
Length = 333
Score = 29.6 bits (67), Expect = 2.7
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
+ AN S AIE GA I + G+G G G V + +G T
Sbjct: 200 SLAVAN-SIAAIEA---GATRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNT 247
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
2-hydroxycarboxylate dehydrogenase family. Members of
this family include ubiquitous enzymes like L-lactate
dehydrogenases (LDH), L-2-hydroxyisocaproate
dehydrogenases, and some malate dehydrogenases (MDH).
LDH catalyzes the last step of glycolysis in which
pyruvate is converted to L-lactate. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. The LDH/MDH-like proteins are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 263
Score = 29.6 bits (67), Expect = 3.0
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 117 IKVIGVGGG-GSNAVNRMIE-SSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCDLTRG 173
I VIG GG G + + S + +E + + I E +L+ + DL
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYD-----------IDEEKLKGVAMDLQDA 49
Query: 174 LGAGGNPSV--GMNAANESKVAIEEAISGADMIFVTAGMGGGTG 215
+ + V + EA AD++ +TAG+G G
Sbjct: 50 VEPLADIKVSITDDP--------YEAFKDADVVIITAGVGRKPG 85
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 29.8 bits (68), Expect = 3.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIATVP 240
A+ +A+ D++ + GGT GA V + + +G +L G+A P
Sbjct: 245 ALRKALKECDLVLL----SGGTSAGAGDVTYRVIEELGEVLVHGVAIKP 289
>gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional.
Length = 292
Score = 29.1 bits (66), Expect = 4.4
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 GMNAANESKVAIEEAISGADMIFVTA 208
G++AA E A EA GADMIF A
Sbjct: 164 GLDAAIERAQAYVEA--GADMIFPEA 187
>gnl|CDD|226648 COG4185, COG4185, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 28.2 bits (63), Expect = 5.8
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPE 161
V G G G + V + + VN D A ++SP P
Sbjct: 7 VAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQISPDNPT 48
>gnl|CDD|183857 PRK13057, PRK13057, putative lipid kinase; Reviewed.
Length = 287
Score = 28.7 bits (65), Expect = 6.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 194 IEEAISGADMIFVTAGMGGGTGT--GAAPVIAGIAKSMGILTVGIA 237
IE G D++ V GGG GT AAP + +GIL +G A
Sbjct: 44 IEAYADGVDLVIV----GGGDGTLNAAAPALVETGLPLGILPLGTA 85
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 28.9 bits (65), Expect = 6.1
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 14/60 (23%)
Query: 194 IEEAISGADMIFV-------TAGMGGGTGT------GAAPVIAGIAKSMGILTVGIATVP 240
+E+ ++ AD++FV T G+G G AA +IA ++KS I+ V +TVP
Sbjct: 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVP 130
>gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic
acid aldolase,; Validated.
Length = 337
Score = 28.6 bits (65), Expect = 7.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
G+ AN S A+E GA I + AG+G G G V+ + MG T
Sbjct: 201 GLGVAN-SLAAVEA---GATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWET 248
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 28.4 bits (64), Expect = 8.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 175 GAGGNPSVG-MNAANESKVAIEEAISGA----DMI---FVTAGMGGGTGTG 217
GAG N +VG ++ +I E I A D + F+ +GGGTG+G
Sbjct: 65 GAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSG 115
>gnl|CDD|214856 smart00852, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 138
Score = 27.2 bits (61), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGA 218
A+ EA++ AD++ T GGTG G
Sbjct: 52 ALREALAEADVVITT----GGTGPGP 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,417,620
Number of extensions: 2098198
Number of successful extensions: 2318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2291
Number of HSP's successfully gapped: 74
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)