RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014098
(430 letters)
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 460 bits (1187), Expect = e-162
Identities = 173/374 (46%), Positives = 230/374 (61%), Gaps = 63/374 (16%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
N + A IKVIGVGGGG+NAVNRMIE+ + GVE+ VNTDAQA+ +S E ++QIG
Sbjct: 7 NIDGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAK 64
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAG NP VG AA ESK IEEA+ GADM+FVTAGMGGGTGTGAAPVIA IAK +
Sbjct: 65 LTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDL 124
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII--------------------- 268
G LTVG+ T PF FEGR+R +QA G++ ++ VDTLI+
Sbjct: 125 GALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFR 184
Query: 269 -------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNA 309
PGL+N+DFADV+ IM + GS+LMGIG ATG++RA +AA A
Sbjct: 185 EADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKA 244
Query: 310 IQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSN 369
I SPLL+ I+ A G++ NITGGT+L+L+EV AA+++ D N+IFG+VI+++L +
Sbjct: 245 ISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKD 304
Query: 370 QVSITLIATGFKGDKLEGKGTHLSHNDVSLG---------------------MSRRSSNS 408
++ +T+IATGF + + + S+ +SR +S
Sbjct: 305 EIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQNTVSRHTSQP 364
Query: 409 GSGSVEIPEFLRQR 422
+++IP FLR R
Sbjct: 365 ADDTLDIPTFLRNR 378
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 458 bits (1181), Expect = e-161
Identities = 162/379 (42%), Positives = 214/379 (56%), Gaps = 68/379 (17%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
P +N A IKV+G+GGGG NAVNRMIE + GVEF +NTDAQA+ +S + +L +G
Sbjct: 6 PPHNYLAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGR 63
Query: 169 DLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
D TRGLGAG +P VG AA ++K IEE + GADM+FVTAG GGGTGTG APV+A IA+
Sbjct: 64 DSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARK 123
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII-------------------- 268
+G LTVG+ T PF FEG+RR+ QA+ G+A LR + DTLI+
Sbjct: 124 LGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAF 183
Query: 269 --------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALN 308
PGL+NVDFADV+ IM AG++LMGIG+A G+ R+ AA
Sbjct: 184 RSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEI 243
Query: 309 AIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS 368
AI SPLL+ +E A G++ +I GG+DL LFE+N AA ++ D P AN+IFG VID SL
Sbjct: 244 AINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLG 303
Query: 369 NQVSITLIATGFKGDKLEGK--------------------------GTHLSHNDVSLGMS 402
++V +T+IA GF K + +
Sbjct: 304 DEVRVTVIAAGFDVSGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGA 363
Query: 403 RRSSNSGSGSVEIPEFLRQ 421
S V++P F+R+
Sbjct: 364 TLSIGGDDDDVDVPPFMRR 382
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 456 bits (1175), Expect = e-160
Identities = 162/377 (42%), Positives = 211/377 (55%), Gaps = 65/377 (17%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
N+ A +KVIGVGGGG+NAVNRMI+ M VEF +NTD QA+ +S E+++QIG
Sbjct: 12 QGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGE 69
Query: 169 DLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
LTRGLGAG NP +G AA ES+ IE+AI GADM+FVT+GMGGGTGTGAAPV+A IAK
Sbjct: 70 KLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKE 129
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII-------------------- 268
MG LTVG+ T PF FEGR+R QA GV ++ VDTLI+
Sbjct: 130 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAF 189
Query: 269 --------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALN 308
G VN+DFADV+ IM + GS+LMGIG ++G++RA +AA
Sbjct: 190 KEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKK 249
Query: 309 AIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS 368
AI SPLL+ I A G++ NITGG L+LFE AA+++ D D N+IFG VI+ L
Sbjct: 250 AISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQ 309
Query: 369 NQVSITLIATGFKGDKLEGKGTHLS-----------------------HNDVSLGMSRRS 405
+++ +T+IATGF S ++ S
Sbjct: 310 DEIVVTVIATGFDDKPTSHGRKSGSTGFGTSVNTSSNATSKDESFTSNSSNAQATDSVSE 369
Query: 406 SNSGSGSVEIPEFLRQR 422
+ +IP F+R R
Sbjct: 370 RTHTTKEDDIPSFIRNR 386
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 449 bits (1158), Expect = e-158
Identities = 122/336 (36%), Positives = 184/336 (54%), Gaps = 41/336 (12%)
Query: 92 KEGLGKSVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
+E +S ++ +AKI V+G GG G+N + R+ + G + +NTDAQ
Sbjct: 15 EEFNELELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQ 74
Query: 152 AMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
+ + + ++ IG LTRGLGAGGNP +G AA ES I+ AI +DM+F+T G+G
Sbjct: 75 QLIRTKA--DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLG 132
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII--- 268
GGTGTG+APV+A I+K +G LTV + T+PF EG+ R A EG+ L+ + DTL++
Sbjct: 133 GGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPN 192
Query: 269 ------------------------------------PGLVNVDFADVRAIMKDAGSSLMG 292
GL+NVDFADV+A+M + G +++G
Sbjct: 193 EKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIG 252
Query: 293 IGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVD 352
IG + + RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E + +D
Sbjct: 253 IGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLD 312
Query: 353 PSANLIFGAVIDKSLSNQVSITLIATGFKGDKLEGK 388
P+A +I+GA ID++L N V + L+ TG +
Sbjct: 313 PNATIIWGATIDENLENTVRVLLVITGVQSRIEFTD 348
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 440 bits (1133), Expect = e-154
Identities = 132/328 (40%), Positives = 187/328 (57%), Gaps = 45/328 (13%)
Query: 100 SESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI 159
E +++ N KIKVIGVGG G+NA+NRMIE + GVEF VNTD Q ++ S
Sbjct: 7 VEKKKENRNIPQANNLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA- 65
Query: 160 PENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAA 219
+ ++QIG ++TRGLGAGG P +G AA ES+ I E + M+F+TAG GGGTGTGA+
Sbjct: 66 -DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGAS 124
Query: 220 PVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII----------- 268
PVIA IAK MGILTV I T PF FEG R +A EG+ LR +VDTLI
Sbjct: 125 PVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELP 184
Query: 269 -----------------------------PGLVNVD--FADVRAIMKDAGSSLMGIGTAT 297
G + + FA + ++MKDAG++++GIG
Sbjct: 185 RDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGK 244
Query: 298 GKSRARDAALNAIQSPLLDIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANL 357
G+ RAR+AA A++S L++ +E A+ IV+NIT +++ + EV+ AA +I A++
Sbjct: 245 GEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADV 304
Query: 358 IFGAVIDKSLSN-QVSITLIATGFKGDK 384
FG + D + + ++ + IAT F +
Sbjct: 305 KFGLIFDDEVPDDEIRVIFIATRFPDED 332
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 438 bits (1129), Expect = e-154
Identities = 127/320 (39%), Positives = 175/320 (54%), Gaps = 43/320 (13%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
+ N KIKVIGVGGGGSNAVNRM E + GVE + +NTD Q + V N++QIG
Sbjct: 1 MEEFVNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKV--PNKIQIG 58
Query: 168 CDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
+TRGLGAG P VG AA E I+E + DM+F++AG+GGGTGTGAAPVIA AK
Sbjct: 59 EKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAK 118
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII------------------- 268
MGILTV +AT+PF FEG R+ +A +G+ L+ + D I+
Sbjct: 119 EMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDA 178
Query: 269 ---------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAAL 307
P ++NVDFADVR +++ G S++G+G G +A A
Sbjct: 179 FKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVE 238
Query: 308 NAIQSPLL-DIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKS 366
A+ SPLL IE A ++ I D+ V+ E I+ V P A +IFGAV++
Sbjct: 239 KAVTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQ 298
Query: 367 LSNQVSITLIATGFKGDKLE 386
+ + + ++AT F +K +
Sbjct: 299 EQDFIRVAIVATDFPEEKFQ 318
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 432 bits (1113), Expect = e-151
Identities = 144/363 (39%), Positives = 197/363 (54%), Gaps = 48/363 (13%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
V N A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G
Sbjct: 5 VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62
Query: 168 CDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
+T+GLGAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63 PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII------------------- 268
MGILTV + T PF FEGR+R A EG+ L +VD+LI
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAA 182
Query: 269 ---------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAAL 307
PG++NVDFADV+ +M + G ++MG G A+G +RAR+A
Sbjct: 183 FAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATE 242
Query: 308 NAIQSPLL-DIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKS 366
AI++PLL D+ ++ A GI+ NIT G DL+L E + +I A + G VID
Sbjct: 243 AAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDAD 302
Query: 367 LSNQVSITLIATGFKGD-----KLEGKGTHLSHNDVSLGMSRRSSNSGSGSVEIPEFLRQ 421
+ +++ +T++ATG K+ S + R + ++ P +R
Sbjct: 303 MRDELHVTVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQREQQSVNYRDLDRPTVMRN 362
Query: 422 RPH 424
+ H
Sbjct: 363 QSH 365
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 427 bits (1100), Expect = e-150
Identities = 138/316 (43%), Positives = 184/316 (58%), Gaps = 43/316 (13%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
V N A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G
Sbjct: 5 VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62
Query: 168 CDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
+T+GLGAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63 PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII------------------- 268
MGILTV + T PF FEGR+R A EG+ L +VD+LI
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAA 182
Query: 269 ---------------------PGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAAL 307
PG++NVDFADV+ +M + G ++MG G A+G +RAR+A
Sbjct: 183 FAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATE 242
Query: 308 NAIQSPLL-DIGIETATGIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKS 366
AI++PLL D+ ++ A GI+ NIT G DL+L E + +I A + G VID
Sbjct: 243 AAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDAD 302
Query: 367 LSNQVSITLIATGFKG 382
+ +++ +T++ATG
Sbjct: 303 MRDELHVTVVATGLGA 318
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 228 bits (582), Expect = 5e-71
Identities = 52/353 (14%), Positives = 97/353 (27%), Gaps = 83/353 (23%)
Query: 110 NNNNEAKIKVIGVGGGGSN------AVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENR 163
N K +G+G GG I+++ +VNT++Q + +N
Sbjct: 11 QGNISLKFGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEI--KNT 68
Query: 164 LQIGCDLTRGL--GAGGNPSVGMNAANESKVAIEEAIS----GADMIFVTAGMGGGTGTG 217
+ G GA NP VG A + + I EA+ D I++T G+GGGTGTG
Sbjct: 69 GNVRKIQLEGYEQGAARNPQVGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTG 128
Query: 218 AAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN---VDTLII------ 268
A + + T+P E + A + ++ N ++++
Sbjct: 129 ALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKL 188
Query: 269 ----------------------------------------PGLVNVDFADVRAIMKDAGS 288
+ D ++ ++ G
Sbjct: 189 YRKFEEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQVINTPGV 248
Query: 289 SLMGIGTATGKS-------RARDAALNAIQSPLLDIG----IETATGIVWNITGGT---- 333
+ NA++ +L +E+A +I
Sbjct: 249 LSLAKLELKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKKSALSIVTSPLRAG 308
Query: 334 -DLTLFEVNTAAEVIYDLVDP----SANLIFGAVIDKSLSNQVSITLIATGFK 381
+N + + K + V + G
Sbjct: 309 RLYNFSFLNQMENFLKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGLP 361
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 189 bits (480), Expect = 2e-56
Identities = 41/303 (13%), Positives = 87/303 (28%), Gaps = 42/303 (13%)
Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTR 172
+ KI +G GG N V+ ++ +NT + + + I
Sbjct: 3 MKNKIVFAPIGQGGGNIVDTLLGIC-GDYNALFINTSKKDLDSLKHAK-HTYHIPYAEGC 60
Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--G 230
G + I E S D++ A M GG G+G P I G+AK M
Sbjct: 61 GKERKKAVGYAQTYYKQIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYPN 120
Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDT------------------------- 265
+ +P E + A ++ + +
Sbjct: 121 KHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKREKESDINKEFA 180
Query: 266 ---------LIIPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL- 315
VD ++ ++ S+++ K + A +++ +
Sbjct: 181 TLFNDFMNMSESHAEGVVDEDEISKLLTMKKSNVI--LEFDDKEDIQVALAKSLKESIFA 238
Query: 316 DIGIETATGIVWNITGGTDL-TLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSIT 374
+ T + + T D+ + + + + N++ I+ + +
Sbjct: 239 EYTTNTCEFMGISTTRVVDVEAIKSIVGYPRRTFKGYNSKKNIVVATGIEPQKTTVQMMN 298
Query: 375 LIA 377
I
Sbjct: 299 EII 301
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 73.8 bits (180), Expect = 2e-14
Identities = 41/254 (16%), Positives = 72/254 (28%), Gaps = 34/254 (13%)
Query: 101 ESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIE----SSMTGVEFWIVNTDAQ-AMKV 155
E + ++ N+ + VIG G G+ + + T VN M +
Sbjct: 29 EHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHL 88
Query: 156 SPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKVAIEEAI----------------- 198
+I E+R+ GA PSV + +
Sbjct: 89 QNIIKEDRIHFD----GLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEG 144
Query: 199 -SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIATVPFCFEGRRR-AIQAQE 254
D + G GGG GTG ++ + + + ++P A+
Sbjct: 145 EVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLS 204
Query: 255 GVANLRNNVDTLIIP----GLVNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAI 310
+ D L L NV D + + S ++ A + +
Sbjct: 205 EIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNV 264
Query: 311 QSPLLDIGIETATG 324
S L +I I
Sbjct: 265 VSTLHEINIIPENY 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 2e-09
Identities = 63/482 (13%), Positives = 124/482 (25%), Gaps = 169/482 (35%)
Query: 16 ISKETQISRASSVKILDYRSDSWGACPRNVKDFLRLKCSAKAHNVSPNHSKDPFLDLHPE 75
I E + + ++ R + K +NVS P+L L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----------YNVS---RLQPYLKLRQA 143
Query: 76 VSMLSGDGTNV-LFGSMKEGLGKSV--SESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNR 132
+ L NV + G + G GK+ + V + +
Sbjct: 144 LLELR-PAKNVLIDG-VL-GSGKTWVALDVCLSYKVQCKMD--------------FKI-- 184
Query: 133 MIESSMTGVEFWI----VNTDAQAMKVSPVIPENRL--QIGCDLTRGLGAGGNPSVGMNA 186
FW+ N+ ++ +L QI + T N + +++
Sbjct: 185 ----------FWLNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 187 ANESK------------------VAIEEAISGADM---IFVTAGMGGGTGTGAAPVIAGI 225
V +A + ++ I +T T V +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--------TRFKQVTDFL 281
Query: 226 AKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDT----------LIIPGLVNVD 275
T + + E + L +D P +++
Sbjct: 282 --------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI- 332
Query: 276 FADVRAIMKDAGSSLMGIGTATG--------KSRARDAALNAIQSPLL------------ 315
A ++D G+ T + +++LN ++
Sbjct: 333 IA---ESIRD------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 316 DIGIETAT-GIVWNITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQ---- 370
I T ++W +VI V N + SL +
Sbjct: 384 SAHIPTILLSLIWF----------------DVIKSDVMVVVNKL----HKYSLVEKQPKE 423
Query: 371 --VSITLIATGFKGDKLEGKGTHLSHNDV--SLGMSRRSSNSGSGSVEIPEFLRQRPHI- 425
+SI I K KLE + H + + + + + ++ HI
Sbjct: 424 STISIPSIYLELKV-KLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIG 478
Query: 426 YH 427
+H
Sbjct: 479 HH 480
Score = 43.3 bits (101), Expect = 1e-04
Identities = 47/403 (11%), Positives = 108/403 (26%), Gaps = 134/403 (33%)
Query: 97 KSVSESLRQ--SS--------VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV 146
K V + + S + + + V + +E + +++
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 147 NTDAQAMKVSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANESKV-AIEEAISG---AD 202
+ +K P ++ + L N + + +A+ A
Sbjct: 96 S----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 203 MIFVTAGMGGGTGTG----AAPVIA--GIAKSM--GI--LTVGIATVP---------FCF 243
+ + G+ G+G A V + M I L + P +
Sbjct: 152 NVLID-GVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 244 EGRRRAIQAQEGVANLRNNVDTLIIPGLVNVDFADVRAIMKDAGSSLMGIGTATGKSRAR 303
+ + +N++ + ++ + L+ KS+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-----------------QAELRRLL-------KSKPY 243
Query: 304 DAALNAIQSPL-LDIGIETATGIVWN---------------ITGGTDLTLFEVNTAAEVI 347
+ L L L V N T +T F ++ A
Sbjct: 244 ENCL------LVLL--------NVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTH 288
Query: 348 YDLVDPSANL-------IFGAVID---KSLSNQVS------ITLIATGFKGDKLEGKGT- 390
L S L + +D + L +V +++IA + +G T
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATW 344
Query: 391 ----HLSHNDVSLGMSRRSSNSGSGSVEI--PEFLRQRPHIYH 427
H++ + ++ + S+ + P R+ +
Sbjct: 345 DNWKHVNCDKLTTIIES--------SLNVLEPAEYRKM---FD 376
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 56.8 bits (136), Expect = 4e-09
Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLG 175
K+ +I GG G N ++++ + D + V + + G
Sbjct: 4 KVCLIFAGGTGMNVATKLVD--LGEAVHCFDTCDKNVVDVHRSVNVTLTK------GTRG 55
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AGGN V + A+ + I AD V +GGG+G+ P+I G V
Sbjct: 56 AGGNRKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVS 115
Query: 236 IATVPF-CFEGRRRAIQAQEGVANLRNNVDTLII 268
+ I + + + N I+
Sbjct: 116 FVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIV 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 25/122 (20%), Positives = 34/122 (27%), Gaps = 35/122 (28%)
Query: 4 RISTCF----APSHT-------------CISKETQISRASSVKI--------LDYRSDSW 38
+ S F +P H+ + + A ++I D R S
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSG 473
Query: 39 GACPRNVKDFLRLKCS-AKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMKEGLGK 97
R V +RL H LD P SG G L K+G G
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATH----ILDFGP--GGASGLGV--LTHRNKDGTGV 525
Query: 98 SV 99
V
Sbjct: 526 RV 527
Score = 37.7 bits (87), Expect = 0.007
Identities = 60/343 (17%), Positives = 99/343 (28%), Gaps = 114/343 (33%)
Query: 35 SDSWGACPRNVKDFLRL--KCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTNVLFGSMK 92
+DSW + +V+ + + + + PN S L P + S + + M
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS------LPPSILEDSLENNEGVPSPM- 338
Query: 93 EGLGKSVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152
L S+S +L Q V + + N + + VE +VN A+
Sbjct: 339 --L--SIS-NLTQEQV-----QDYVN----------KTNSHLPAGKQ-VEISLVNG-AKN 376
Query: 153 MKVSPVIPENRLQIGCDLTRGLGAGGNPS--VGMNAANESKVAIEEAISGAD---MIFVT 207
+ VS G P G+N K A SG D + F
Sbjct: 377 LVVS---------------------GPPQSLYGLNLTLR-KAK---APSGLDQSRIPF-- 409
Query: 208 AGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF---CFEGRRRAIQAQEGVANLRNNVD 264
+ S L V PF I N+ N
Sbjct: 410 --------SERKLKF-----SNRFLPV---ASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 265 TLIIPGLV--NVDFADVRAIMKDAGSSLMGIGTATGKSRAR---DAALNAIQSPLLDIG- 318
+ IP V D +D+R + + + R + + +LD G
Sbjct: 454 DIQIP--VYDTFDGSDLRVLSGSISERI--VDCII---RLPVKWETTTQFKATHILDFGP 506
Query: 319 ------------IETATGI-VWNITGGTDLTLFEVNTAAEVIY 348
+ TG+ V I GT ++N + +
Sbjct: 507 GGASGLGVLTHRNKDGTGVRV--IVAGT----LDINPDDDYGF 543
Score = 36.6 bits (84), Expect = 0.020
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 47/131 (35%)
Query: 172 RGL--------GAGGNPSVGMNAANESKVAI---EEAISGADMIFVTAGMGGGTGTGAAP 220
RG+ G + GM A N +VA +EA+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-------------------- 1828
Query: 221 VIAGIAKSMGILTVGIA--------TVPFCFEGRRRAIQAQEGVANL--RNNVDTLIIPG 270
V+ + K G L V I V G RA+ V N +D + +
Sbjct: 1829 VVERVGKRTGWL-VEIVNYNVENQQYV--A-AGDLRALDTVTNVLNFIKLQKIDIIELQ- 1883
Query: 271 LVNVDFADVRA 281
++ +V
Sbjct: 1884 -KSLSLEEVEG 1893
Score = 31.9 bits (72), Expect = 0.51
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFG-AVIDKSLSNQVSITLIATGFKGDKL 385
G DL ++ + AA+ +++ D +G +++D ++N V++T+ G KG ++
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural
genomics, APC62130.1, methyltransferase, PSI-2, P
structure initiative; 2.00A {Bacteroides fragilis} PDB:
3fq6_A
Length = 115
Score = 30.1 bits (69), Expect = 0.43
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 216 TGAAPVIAGIAKSMGILTVGIATVPFCFEG-------RRRAIQAQEGVANLRNNVDTLII 268
+ A + + S G+ FCFEG R +++ L + T++
Sbjct: 1 SNATAFVPALVAS------GLPNEKFCFEGFLPQKKGRMTKLKS------LVDEHRTMVF 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 149 DAQAMK-VSPVIPENRLQIGCDLTRGLGAGGNPSVGMNAANE 189
+ QA+K + + L++ P++ + A E
Sbjct: 18 EKQALKKL-----QASLKL-------YADDSAPALAIKATME 47
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 30.1 bits (67), Expect = 1.6
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV----IPENRLQ 165
+N + I + GGGS ++ + + + + + R
Sbjct: 22 SNMKKKSFS-IVIAGGGSTFTPGIVLMLLD---------HLEEFPIRKLKLYDNDKERQD 71
Query: 166 IGCDLTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGG 212
P + A + EEA + D + +G
Sbjct: 72 RIAGACDVFIREKAPDIEFAATTD----PEEAFTDVDFVMAHIRVGK 114
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 29.8 bits (66), Expect = 1.8
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 116 KIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
KI +IG GS + + S ++G +++ D E RL
Sbjct: 5 KIGIIG---AGSAVFSLRLVSDLCKTPGLSGSTVTLMDID-----------EERLDAILT 50
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGG 212
+ + VG + E + +++ I AD + TA +GG
Sbjct: 51 IAKKYVE----EVGADLKFEKTMNLDDVIIDADFVINTAMVGG 89
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 29.2 bits (66), Expect = 2.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
+ AN S VA+EE G D + + AGMG G G V +A+ +G
Sbjct: 206 SLGVAN-SIVAVEE---GCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNH 253
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 29.0 bits (64), Expect = 3.8
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 116 KIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
KI IG GGS+ ++E + E W+V+ + +L+I
Sbjct: 9 KIATIG---GGSSYTPELVEGLIKRYHELPVGELWLVDIPEG---------KEKLEIVGA 56
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT 216
L + + + ++ + A+ GAD + +GG
Sbjct: 57 LAKRMVEKAGVPIEIHLTLD----RRRALDGADFVTTQFRVGGLEAR 99
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac
beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma
cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A*
1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A
3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A*
2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ...
Length = 648
Score = 28.6 bits (63), Expect = 4.1
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 243 FEGRRRAIQAQEGVANLRNNVDTLIIPGLVNVD-----FADVRAIMKDAGSSLMGIG 294
F+ + + ++ V + +P LVNVD AD R +SL+
Sbjct: 25 FKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADAR-YETSFDNSLIDTV 80
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 28.3 bits (64), Expect = 6.0
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIA 237
IE+A++ D++ ++ GG G + A + + +G + GIA
Sbjct: 239 LIEKAVNVGDVVVIS----GGASGGTKDLTASVIEELGEVKVHGIA 280
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 27.9 bits (63), Expect = 6.3
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 184 MNAANESKVAIEEAISGADMIFVTAGM--GGGTGTGAAPVIAGIAKSMGILTVGIAT 238
MN K+A + A+ +V A G G+G+ I + + +A
Sbjct: 1 MNQLEMKKLAAQAALQ-----YVKADRIVGVGSGSTVNCFIEALGTIKDKIQGAVAA 52
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 27.9 bits (61), Expect = 6.3
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLG 175
K+ V G G G V + D +A + + + + L + + G
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFAD-EAERWTKALGADELTVIVNEKDGTQ 62
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVT 207
+ + E AISGAD++ +T
Sbjct: 63 TEVKSRPKVITKD-----PEIAISGADVVILT 89
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 27.0 bits (59), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 217 GAAPVIAGIAKSMGILTVG 235
AA +IAG A+SMG+ VG
Sbjct: 121 AAARMIAGSARSMGVEVVG 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,470,558
Number of extensions: 410930
Number of successful extensions: 1254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 61
Length of query: 430
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 334
Effective length of database: 4,021,377
Effective search space: 1343139918
Effective search space used: 1343139918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)