RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014098
(430 letters)
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 182 bits (464), Expect = 2e-56
Identities = 89/154 (57%), Positives = 108/154 (70%), Gaps = 2/154 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGL 174
A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G +T+GL
Sbjct: 2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLGPGVTKGL 59
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK MGILTV
Sbjct: 60 GAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV 119
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268
+ T PF FEGR+R A EG+ L +VD+LI
Sbjct: 120 AVVTRPFPFEGRKRMQIADEGIRALAESVDSLIT 153
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 171 bits (434), Expect = 5e-52
Identities = 95/173 (54%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGL 174
A IKV+G+GGGG NAVNRMIE + GVEF +NTDAQA+ +S + +L +G D TRGL
Sbjct: 2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGL 59
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG +P VG AA ++K IEE + GADM+FVTAG GGGTGTG APV+A IA+ +G LTV
Sbjct: 60 GAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTV 119
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIIPGLVNV-DFADVRAIMKDA 286
G+ T PF FEG+RR+ QA+ G+A LR + DTLI+ + D + DA
Sbjct: 120 GVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDA 172
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 161 bits (409), Expect = 3e-48
Identities = 72/158 (45%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDL 170
+AKI V+G GG G+N + R+ + G + +NTDAQ + + + ++ IG L
Sbjct: 12 QQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKA--DKKILIGKKL 69
Query: 171 TRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230
TRGLGAGGNP +G AA ES I+ AI +DM+F+T G+GGGTGTG+APV+A I+K +G
Sbjct: 70 TRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIG 129
Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268
LTV + T+PF EG+ R A EG+ L+ + DTL++
Sbjct: 130 ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVV 167
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 154 bits (391), Expect = 9e-46
Identities = 90/153 (58%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLG 175
KIKVIGVGG G+NA+NRMIE + GVEF VNTD Q ++ S + ++QIG ++TRGLG
Sbjct: 2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA--DVKIQIGENITRGLG 59
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AGG P +G AA ES+ I E + M+F+TAG GGGTGTGA+PVIA IAK MGILTV
Sbjct: 60 AGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVA 119
Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLII 268
I T PF FEG R +A EG+ LR +VDTLI
Sbjct: 120 IVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIK 152
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 121
Score = 122 bits (307), Expect = 2e-34
Identities = 39/114 (34%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
+ FA + ++MKDAG++++GIG G+ RAR+AA A++S L++ +E A+ IV+NIT
Sbjct: 4 LTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITA 63
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLS-NQVSITLIATGFKGDK 384
+++ + EV+ AA +I A++ FG + D + +++ + IAT F +
Sbjct: 64 PSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDED 117
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 116 bits (292), Expect = 2e-32
Identities = 58/107 (54%), Positives = 78/107 (72%)
Query: 274 VDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITGGT 333
VDFADV+ IM AG++LMGIG+A G+ R+ AA AI SPLL+ +E A G++ +I GG+
Sbjct: 1 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 60
Query: 334 DLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
DL LFE+N AA ++ D P AN+IFG VID SL ++V +T+IA GF
Sbjct: 61 DLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGF 107
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 111 bits (278), Expect = 3e-30
Identities = 46/113 (40%), Positives = 73/113 (64%)
Query: 272 VNVDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLLDIGIETATGIVWNITG 331
+NVDFADV+A+M + G +++GIG + + RA++A A+ SPLLD+ I+ ATG + ++ G
Sbjct: 1 INVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMG 60
Query: 332 GTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDK 384
DLTL E + +DP+A +I+GA ID++L N V + L+ TG +
Sbjct: 61 PEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRI 113
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 110 bits (276), Expect = 5e-30
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 274 VDFADVRAIMKDAGSSLMGIGTATGKSRARDAALNAIQSPLL-DIGIETATGIVWNITGG 332
VDFADV+ +M + G ++MG G A+G +RAR+A AI++PLL D+ ++ A GI+ NIT G
Sbjct: 1 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 60
Query: 333 TDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGF 380
DL+L E + +I A + G VID + +++ +T++ATG
Sbjct: 61 PDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGL 108
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 33.5 bits (76), Expect = 0.043
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCDLTRGLGAGG 178
V GVG GG+ + + G IV + SPV+ + Q G +G+GAG
Sbjct: 164 VAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK---SPVL--SGGQPGKHAIQGIGAGF 218
Query: 179 NPSVGMNAANESKVAI--EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
P + + + + + EEA A + G+ G +GA +A K
Sbjct: 219 VPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGAN--VAAALK 267
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 28.6 bits (64), Expect = 1.3
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 31 LDYRSDSWGACPRNVKDFLRLKCS 54
+ Y + CP + + + C
Sbjct: 281 IGYHHPPYDNCPLDKEVYNSNNCE 304
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
jannaschii [TaxId: 2190]}
Length = 100
Score = 26.7 bits (59), Expect = 2.4
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 106 SSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMT--GVEFWIVNTDAQAMKVSPVIPENR 163
++ N A I + G G G + I ++ V +++ + +S V+ E
Sbjct: 7 KAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEED 66
Query: 164 LQ 165
+
Sbjct: 67 VD 68
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 25.0 bits (55), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 217 GAAPVIAGIAKSMGILTVG 235
AA +AG A+SMG+ G
Sbjct: 51 AAANTVAGTARSMGVTIEG 69
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 24.6 bits (54), Expect = 6.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 217 GAAPVIAGIAKSMGILTV 234
A +I G AKSMGI V
Sbjct: 53 AAMKIIEGTAKSMGIEVV 70
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 24.8 bits (54), Expect = 7.2
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 117 IKVIGVGGGGSNAVNRM--IESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCD 169
+K + V G G RM G+ W V DA+ +P + I +
Sbjct: 1 MKQVCVLGNGQLG--RMLRQAGEPLGIAVWPVGLDAE----PAAVPFQQSVITAE 49
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 24.6 bits (54), Expect = 7.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 217 GAAPVIAGIAKSMGI 231
AA +IAG A+SMG+
Sbjct: 52 AAARMIAGSARSMGV 66
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 25.3 bits (55), Expect = 7.8
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 328 NITGGTDLTLFEVNTAAEVIYDLVDPSANLIFGAVIDKSLSNQVSITLIATGFKGDKLEG 387
+ D+ E + +V+ D P A +D + + L T K + L+
Sbjct: 26 ELVLKVDVNGVEELDSPDVVIDFSSPEA---LPKTVDLCKKYRAGLVLGTTALKEEHLQM 82
Query: 388 KGTHLSHNDVSLGMSRRSSNSGSGSVEIPEFL 419
V S + G+++ EFL
Sbjct: 83 LRELSKEVPVVQAYS--RTVFAIGALKAAEFL 112
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 24.5 bits (54), Expect = 8.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 217 GAAPVIAGIAKSMGI 231
A +I G A+SMGI
Sbjct: 57 AAMRMIEGTARSMGI 71
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase
(glucan 1,4-alpha-maltohydrolase), domain D {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 81
Score = 24.6 bits (53), Expect = 9.6
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 81 GDGTNVLFGSMKEGLGKSVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVN 131
G + KS + + + VPN + GG SN +
Sbjct: 28 GTTQGTVTFGGVTATVKSWTSNRIEVYVPNMAAGLTDVKVTAGGVSSNLYS 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,508,759
Number of extensions: 68432
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 31
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)