Query 014100
Match_columns 430
No_of_seqs 171 out of 2252
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 01:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 8.3E-24 1.8E-28 231.6 20.1 300 38-394 599-904 (1153)
2 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.5E-25 207.0 19.3 286 37-376 620-910 (1153)
3 PLN00113 leucine-rich repeat r 99.9 6.1E-21 1.3E-25 208.1 16.4 310 42-394 108-439 (968)
4 PLN00113 leucine-rich repeat r 99.8 2.4E-20 5.2E-25 203.4 16.2 351 9-395 179-559 (968)
5 KOG0444 Cytoskeletal regulator 99.7 3.1E-19 6.8E-24 171.9 -5.6 258 9-310 23-300 (1255)
6 KOG4194 Membrane glycoprotein 99.7 7.8E-18 1.7E-22 161.3 3.2 334 14-392 98-448 (873)
7 KOG0444 Cytoskeletal regulator 99.6 3.4E-17 7.4E-22 158.0 -3.1 274 42-372 94-375 (1255)
8 KOG4194 Membrane glycoprotein 99.6 2.9E-16 6.3E-21 150.6 1.4 289 38-379 159-464 (873)
9 KOG4341 F-box protein containi 99.5 1.9E-16 4.2E-21 146.4 -7.4 288 79-395 138-438 (483)
10 KOG4341 F-box protein containi 99.4 1.3E-15 2.8E-20 141.0 -7.6 313 51-392 138-461 (483)
11 PRK15387 E3 ubiquitin-protein 99.4 4.2E-12 9.2E-17 131.2 14.4 254 51-394 201-456 (788)
12 KOG0472 Leucine-rich repeat pr 99.4 1E-14 2.2E-19 134.3 -5.1 331 38-412 193-557 (565)
13 KOG0618 Serine/threonine phosp 99.4 8.7E-14 1.9E-18 140.4 -0.2 214 164-394 217-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.4 5.9E-12 1.3E-16 130.1 13.1 245 38-371 211-457 (788)
15 KOG0472 Leucine-rich repeat pr 99.3 1.6E-14 3.5E-19 133.1 -9.3 157 218-397 155-311 (565)
16 PRK15370 E3 ubiquitin-protein 99.1 7.3E-11 1.6E-15 122.7 7.8 175 80-311 200-377 (754)
17 PRK15370 E3 ubiquitin-protein 99.1 1.3E-10 2.7E-15 120.9 9.5 243 79-395 178-427 (754)
18 KOG4658 Apoptotic ATPase [Sign 99.1 1.1E-10 2.4E-15 123.2 6.3 297 36-378 531-848 (889)
19 KOG0618 Serine/threonine phosp 99.0 2.1E-11 4.6E-16 123.4 -2.4 231 79-345 241-488 (1081)
20 KOG4658 Apoptotic ATPase [Sign 98.8 4E-09 8.7E-14 111.6 6.9 284 40-378 559-866 (889)
21 KOG0617 Ras suppressor protein 98.8 1.8E-10 4E-15 94.8 -2.6 159 77-292 31-189 (264)
22 cd00116 LRR_RI Leucine-rich re 98.8 1.2E-09 2.5E-14 104.1 0.5 93 77-177 21-119 (319)
23 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.7E-14 103.9 -0.1 89 222-312 192-289 (319)
24 KOG0617 Ras suppressor protein 98.7 7.8E-10 1.7E-14 91.1 -4.4 143 37-201 42-189 (264)
25 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3E-13 95.5 0.6 204 48-283 118-334 (505)
26 KOG3207 Beta-tubulin folding c 98.5 2.7E-08 5.8E-13 93.5 0.1 109 76-196 118-233 (505)
27 KOG2120 SCF ubiquitin ligase, 98.4 3.3E-09 7.3E-14 94.9 -6.7 158 136-312 207-374 (419)
28 KOG2120 SCF ubiquitin ligase, 98.3 2.2E-08 4.7E-13 89.8 -3.7 167 224-394 186-374 (419)
29 PF14580 LRR_9: Leucine-rich r 98.3 3.8E-07 8.2E-12 77.9 3.3 108 49-177 17-124 (175)
30 KOG1947 Leucine rich repeat pr 98.3 3.9E-08 8.4E-13 99.1 -4.0 72 101-181 184-258 (482)
31 KOG1947 Leucine rich repeat pr 98.2 5E-08 1.1E-12 98.3 -5.9 96 78-180 187-283 (482)
32 PRK15386 type III secretion pr 98.1 9.2E-06 2E-10 78.0 8.8 137 184-369 51-187 (426)
33 PF13855 LRR_8: Leucine rich r 98.1 5.4E-06 1.2E-10 57.9 4.2 59 79-149 1-59 (61)
34 PRK15386 type III secretion pr 98.1 3.2E-05 6.9E-10 74.3 10.7 38 78-121 51-88 (426)
35 PF14580 LRR_9: Leucine-rich r 98.1 3.5E-06 7.5E-11 72.0 3.7 121 38-176 29-150 (175)
36 KOG4237 Extracellular matrix p 98.0 1.9E-07 4.1E-12 86.9 -4.9 82 80-175 68-149 (498)
37 KOG4237 Extracellular matrix p 97.9 7.4E-07 1.6E-11 83.0 -2.8 248 36-310 75-355 (498)
38 KOG1259 Nischarin, modulator o 97.9 8.6E-06 1.9E-10 73.5 3.4 81 219-310 303-383 (490)
39 COG4886 Leucine-rich repeat (L 97.7 4.7E-05 1E-09 74.8 4.9 170 78-288 115-290 (394)
40 PF13855 LRR_8: Leucine rich r 97.6 0.00015 3.4E-09 50.4 5.7 58 223-285 1-59 (61)
41 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 81.3 1.9 112 50-178 121-232 (699)
42 KOG0532 Leucine-rich repeat (L 97.5 6.4E-06 1.4E-10 80.3 -3.8 116 38-177 85-200 (722)
43 COG4886 Leucine-rich repeat (L 97.5 8E-05 1.7E-09 73.2 3.6 178 44-265 109-291 (394)
44 KOG0532 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 77.9 -4.2 138 37-200 107-249 (722)
45 KOG1909 Ran GTPase-activating 97.3 0.00015 3.2E-09 67.0 2.4 101 38-149 17-130 (382)
46 KOG2982 Uncharacterized conser 97.2 6.1E-05 1.3E-09 68.1 -0.3 91 251-349 173-265 (418)
47 KOG3665 ZYG-1-like serine/thre 97.1 0.00023 5.1E-09 74.0 1.7 34 77-114 171-204 (699)
48 PLN03150 hypothetical protein; 97.0 0.001 2.2E-08 69.1 6.0 109 52-180 419-529 (623)
49 KOG1259 Nischarin, modulator o 97.0 0.00015 3.2E-09 65.7 -0.6 16 162-177 395-410 (490)
50 PLN03150 hypothetical protein; 96.9 0.0017 3.8E-08 67.4 6.7 83 81-178 420-502 (623)
51 PF12799 LRR_4: Leucine Rich r 96.8 0.0018 3.9E-08 41.6 3.7 39 79-121 1-39 (44)
52 KOG2982 Uncharacterized conser 96.5 0.0034 7.5E-08 57.1 4.7 68 43-115 89-156 (418)
53 KOG0531 Protein phosphatase 1, 96.1 0.0012 2.7E-08 65.2 -0.6 15 47-61 91-105 (414)
54 KOG1859 Leucine-rich repeat pr 95.8 0.00014 2.9E-09 73.4 -8.5 58 220-284 206-263 (1096)
55 KOG1644 U2-associated snRNP A' 95.7 0.024 5.2E-07 48.9 5.4 107 52-175 43-149 (233)
56 PF12799 LRR_4: Leucine Rich r 95.6 0.012 2.6E-07 37.7 2.8 33 52-89 2-34 (44)
57 KOG0531 Protein phosphatase 1, 95.2 0.0039 8.5E-08 61.6 -0.9 105 14-149 91-196 (414)
58 KOG1644 U2-associated snRNP A' 95.1 0.049 1.1E-06 47.0 5.6 84 78-177 41-124 (233)
59 KOG3864 Uncharacterized conser 95.1 0.003 6.4E-08 54.3 -1.7 38 138-177 150-187 (221)
60 KOG1859 Leucine-rich repeat pr 94.5 0.001 2.2E-08 67.3 -7.0 90 38-148 174-263 (1096)
61 KOG2739 Leucine-rich acidic nu 94.0 0.027 5.7E-07 50.5 1.5 15 101-115 87-101 (260)
62 KOG3864 Uncharacterized conser 93.9 0.0081 1.8E-07 51.7 -1.8 18 332-349 150-167 (221)
63 KOG2123 Uncharacterized conser 93.8 0.0022 4.8E-08 57.7 -5.5 105 50-173 18-124 (388)
64 KOG1909 Ran GTPase-activating 92.6 0.052 1.1E-06 50.6 1.2 148 16-177 155-309 (382)
65 KOG2123 Uncharacterized conser 92.2 0.016 3.5E-07 52.3 -2.5 87 77-181 17-103 (388)
66 PF13306 LRR_5: Leucine rich r 90.9 1.1 2.4E-05 35.8 7.3 13 101-113 31-43 (129)
67 KOG4579 Leucine-rich repeat (L 90.9 0.03 6.5E-07 45.3 -2.0 82 81-177 29-111 (177)
68 PF13504 LRR_7: Leucine rich r 89.7 0.26 5.7E-06 24.3 1.6 16 360-376 2-17 (17)
69 KOG2739 Leucine-rich acidic nu 89.7 0.2 4.2E-06 45.1 1.8 38 248-286 88-127 (260)
70 COG5238 RNA1 Ran GTPase-activa 88.9 0.084 1.8E-06 47.7 -1.0 72 38-116 17-103 (388)
71 PF00560 LRR_1: Leucine Rich R 88.8 0.32 7E-06 25.8 1.6 19 360-379 1-19 (22)
72 smart00367 LRR_CC Leucine-rich 86.1 0.46 1E-05 26.3 1.3 17 358-374 1-17 (26)
73 PF13306 LRR_5: Leucine rich r 84.5 10 0.00022 30.1 9.1 13 101-113 8-20 (129)
74 COG5238 RNA1 Ran GTPase-activa 79.8 0.41 9E-06 43.4 -0.9 146 162-313 88-254 (388)
75 KOG4579 Leucine-rich repeat (L 77.8 0.2 4.3E-06 40.7 -3.1 87 53-155 29-115 (177)
76 smart00370 LRR Leucine-rich re 58.3 5.5 0.00012 21.7 1.0 11 105-115 2-12 (26)
77 smart00369 LRR_TYP Leucine-ric 58.3 5.5 0.00012 21.7 1.0 11 105-115 2-12 (26)
78 PF13516 LRR_6: Leucine Rich r 54.7 7.9 0.00017 20.7 1.2 11 105-115 2-12 (24)
79 KOG3763 mRNA export factor TAP 42.2 14 0.0003 37.2 1.5 71 76-155 215-286 (585)
80 smart00365 LRR_SD22 Leucine-ri 34.1 36 0.00077 18.9 1.7 16 105-121 2-17 (26)
81 smart00368 LRR_RI Leucine rich 25.4 44 0.00095 18.7 1.1 11 105-115 2-12 (28)
82 PF07725 LRR_3: Leucine Rich R 23.5 43 0.00094 17.3 0.8 19 52-71 1-19 (20)
83 smart00364 LRR_BAC Leucine-ric 23.5 56 0.0012 18.2 1.3 16 185-200 2-17 (26)
84 KOG3763 mRNA export factor TAP 22.3 72 0.0016 32.4 2.6 39 49-89 216-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.3e-24 Score=231.64 Aligned_cols=300 Identities=19% Similarity=0.305 Sum_probs=202.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|... .+.+|++|++.++. +..+|.+. ..+++|+.|++++|.++..++. +..+++|++|++++|..
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSS 669 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCC
Confidence 4455665554 56899999999875 88888877 7899999999999877776543 66789999999999988
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNK 195 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~ 195 (430)
+..+ |..+ ..+++|+.|++++|..++.+|.. ..+++|+.|++++|..+..+| +.+|++|+++++
T Consensus 670 L~~l---------p~si-~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 670 LVEL---------PSSI-QYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred cccc---------chhh-hccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 8777 6665 88999999999999999988764 268999999999999888877 568999999998
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCc----hhhhhcccccEEeeccCcccccccCCc
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND----ESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~----~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
.+..+++ ...+++|++|.+.++... .++.... .....+++|+.|++++|+.+..+|..+
T Consensus 736 ~i~~lP~----------------~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 736 AIEEFPS----------------NLRLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred ccccccc----------------cccccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 8665441 123556666666553211 1110000 000233567777777766666666666
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
..+++|+.|++++|..++.+|.. ..+++|+.|++++|..+..+.. ...+|+.|++.+. .++.++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~ 863 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPW 863 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-----------cccccCEeECCCC-CCccChH
Confidence 66777777777777666666542 2466677777777766554421 0345556665552 4555543
Q ss_pred CCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
. ...+++|++|++.+|++++.+|.....+++|+.+++++|.
T Consensus 864 s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 W--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred H--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 2 2235666666666666666666555555666666665554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.1e-20 Score=207.03 Aligned_cols=286 Identities=24% Similarity=0.370 Sum_probs=209.9
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+..++.+...+++|+.|+++++..+..++. ...+++|+.|++++|..+..++.. +..+++|+.|++++|.
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCC
Confidence 366788888889999999999999887775442 256899999999999888876543 7889999999999999
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEe
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTT 192 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l 192 (430)
.++.+ |..+ .+++|+.|++++|..+..+|. ...+|++|++.++. ++.+| .++|++|.+
T Consensus 693 ~L~~L---------p~~i--~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 693 NLEIL---------PTGI--NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELIL 754 (1153)
T ss_pred CcCcc---------CCcC--CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-cccccccccccccccccc
Confidence 88877 5543 689999999999988877653 24688999998875 56666 356777777
Q ss_pred cCCCCCcccCCCcceeccCccccCC-cCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFD-EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
.++....... . ...+.. ....+++|+.|++++++.+..++ ..+ ..+++|+.|++.+|..+..+|...
T Consensus 755 ~~~~~~~l~~--~------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si---~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 755 CEMKSEKLWE--R------VQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSI---QNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccchhhccc--c------ccccchhhhhccccchheeCCCCCCccccC-hhh---hCCCCCCEEECCCCCCcCeeCCCC
Confidence 6644222110 0 000000 01235789999999887777664 334 788899999999998888887665
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
.+++|+.|++++|..+..+|. ...+|++|++.++ .+++++ .....+++|+.|++.+|++++.++.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP--------~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVP--------WWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred -CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccCh--------HHHhcCCCCCEEECCCCCCcCccCc
Confidence 788999999999988877653 2467888888764 444432 2334478888888888888888776
Q ss_pred CCcccCCCCccEEEeccCCCCcccc
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~ 376 (430)
.. ..+++|+.+++.+|..++.++
T Consensus 888 ~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 888 NI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cc--ccccCCCeeecCCCccccccc
Confidence 33 347888888888888876544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.1e-21 Score=208.07 Aligned_cols=310 Identities=16% Similarity=0.114 Sum_probs=157.4
Q ss_pred hhhhccc-CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccE
Q 014100 42 KCYEEMI-GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 42 ~l~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 120 (430)
.+|..+. .+++|++|+++++. +.. . .+...+++|++|++++| .+....|.. ++.+++|++|++++|.....
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~-l~~----~-~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNN-FTG----S-IPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred cCChHHhccCCCCCEEECcCCc-ccc----c-cCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCccccc
Confidence 4554444 66777777777665 221 1 22245677777777776 333333433 66677777777777743323
Q ss_pred eeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCC
Q 014100 121 VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNK 195 (430)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~ 195 (430)
+ |..+ ..+++|++|+++++.....+|.. +..+++|+.|++.+|.....+| .++|++|++++|
T Consensus 180 ~---------p~~~-~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 180 I---------PNSL-TNLTSLEFLTLASNQLVGQIPRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred C---------Chhh-hhCcCCCeeeccCCCCcCcCChH---HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 3 3333 66777777777766544444433 5667777777777765433343 456777777777
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
.+.+..+ ...+.+++|+.|+++++ .+....+..+ ..+++|+.|++++|.....+|..+..++
T Consensus 247 ~l~~~~p--------------~~l~~l~~L~~L~L~~n-~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 247 NLTGPIP--------------SSLGNLKNLQYLFLYQN-KLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred eeccccC--------------hhHhCCCCCCEEECcCC-eeeccCchhH---hhccCcCEEECcCCeeccCCChhHcCCC
Confidence 6443221 12333444555555443 2222222222 3444455555544433333333344444
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccc----------------ccccCCcceeecccceee
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ----------------VGEEAKGCVVFEELGYLG 339 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~~~~~~~L~~L~ 339 (430)
+|+.|+++++.....++. .+..+++|+.|++.+|.....+...- .+..+......++|+.|+
T Consensus 309 ~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 444444444332222221 12334444444444432211110000 000011112244555566
Q ss_pred cccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 340 LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 340 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+.++.-...++. ....+++|++|++.+|.....+|..+..+++|+.++++++.
T Consensus 387 l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 387 LFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 555432223332 22347788888888876666677777778888888887754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2.4e-20 Score=203.38 Aligned_cols=351 Identities=13% Similarity=0.089 Sum_probs=178.1
Q ss_pred cccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeec
Q 014100 9 TFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDD 88 (430)
Q Consensus 9 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 88 (430)
..|..+..+++|+++.+.+.. -...+|..+..+++|++|+++++.-...++... ..+++|++|++++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~ 245 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQ---------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVY 245 (968)
T ss_pred cCChhhhhCcCCCeeeccCCC---------CcCcCChHHcCcCCccEEECcCCccCCcCChhH----hcCCCCCEEECcC
Confidence 345556677888888874321 011244445555555555555544111111111 3445555555555
Q ss_pred CcCCCcCCchhHHhhcCCCCEEEEecCCCccEeec------------cc--cc-cCCcCCCcccccccceeecccccccc
Q 014100 89 CTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH------------LE--EL-NADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 89 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~------------~~--~~-~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
| ++....|.. +.++++|++|++++|.....++. +. .+ ...|.. +..+++|+.|++.++....
T Consensus 246 n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 246 N-NLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred c-eeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCC
Confidence 4 222222222 44455555555554421111100 00 00 000222 2445555555555543333
Q ss_pred ccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccC--------CCcceecc-Cc-cccCCc
Q 014100 154 RFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QI-QPLFDE 218 (430)
Q Consensus 154 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~-~~~~~~ 218 (430)
..+.. +..+++|+.|++.+|.....+| ..+|+.|++++|.+.+..+ ++.+.+.+ .. ......
T Consensus 323 ~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 323 KIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCChh---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 33222 4455666666666554333333 3456666666555432111 11111111 00 011122
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++.....++.....+++|+.|++++|.....+|. ..
T Consensus 400 ~~~~~~L~~L~L~~n-~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---~~ 472 (968)
T PLN00113 400 LGACRSLRRVRLQDN-SFSGELPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---SF 472 (968)
T ss_pred HhCCCCCCEEECcCC-EeeeECChhH---hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---cc
Confidence 344566666666664 3443333333 5666667777766654444444455666777777776654444443 12
Q ss_pred cccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCC
Q 014100 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 378 (430)
..++|+.|++++|.....+ +.....+++|+.|++++|.-...++. ....+++|++|++++|.....+|..
T Consensus 473 ~~~~L~~L~ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAV--------PRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ccccceEEECcCCccCCcc--------ChhhhhhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChh
Confidence 3466777777766432221 12223477888889888744444544 2234889999999998777778888
Q ss_pred CcCCCCceEEecccCCC
Q 014100 379 VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 379 ~~~~~~L~~l~l~~~~~ 395 (430)
+..+++|+.++++++..
T Consensus 543 ~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQL 559 (968)
T ss_pred HhCcccCCEEECCCCcc
Confidence 88899999999988764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=3.1e-19 Score=171.92 Aligned_cols=258 Identities=21% Similarity=0.273 Sum_probs=145.5
Q ss_pred cccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeec
Q 014100 9 TFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDD 88 (430)
Q Consensus 9 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 88 (430)
+||+...-+..++-+++ ..+.+.++|+++..+.+|++|.+.++. +..+.-.. ..+|.||.+++..
T Consensus 23 ~FP~~v~qMt~~~WLkL----------nrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKL----------NRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRD 87 (1255)
T ss_pred cCchhHHHhhheeEEEe----------chhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhc
Confidence 45555555666777777 557788899999999999999988776 55444333 6788888888877
Q ss_pred CcCCCcC-CchhHHhhcCCCCEEEEecCCCccEeec--------------cccccCCcCCCcccccccceeecccccccc
Q 014100 89 CTNMLSA-IPANLIRCLNNLRWLEVRNCDSLEEVLH--------------LEELNADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 89 c~~l~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
+ ++... .|.. +-++..|.+||+++| ++.+++. -..+..+|..++.++..|-.|++++ +.+.
T Consensus 88 N-~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe 163 (1255)
T KOG0444|consen 88 N-NLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLE 163 (1255)
T ss_pred c-ccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhh
Confidence 6 44432 2444 446788888888877 5555521 0112233444455555555555554 2444
Q ss_pred ccccCcccccCCCCccEEEEecCCC----ccccc-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 154 RFCNFTENIIEMPELRYLAIENCPD----METFI-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 154 ~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
.+|+. +..+..|++|++++++- ++++| ..+|+.|++++..-+ ...+..++..+.+|..+
T Consensus 164 ~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------------l~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 164 MLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------------LDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hcCHH---HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-------------hhcCCCchhhhhhhhhc
Confidence 44444 44455555555555542 22333 334555555544411 11122344455667777
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEE
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 308 (430)
+++. +++..++ +.+ ..+++|+.|++++ +.++++.-......+|++|.++. +.++.+|. .+..++.|+.|++
T Consensus 228 DlS~-N~Lp~vP-ecl---y~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 228 DLSE-NNLPIVP-ECL---YKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYA 298 (1255)
T ss_pred cccc-cCCCcch-HHH---hhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHh
Confidence 7765 4555553 333 5566777777766 35555544444555666666655 24555544 2344555665555
Q ss_pred cc
Q 014100 309 AD 310 (430)
Q Consensus 309 ~~ 310 (430)
.+
T Consensus 299 n~ 300 (1255)
T KOG0444|consen 299 NN 300 (1255)
T ss_pred cc
Confidence 43
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.8e-18 Score=161.25 Aligned_cols=334 Identities=15% Similarity=0.141 Sum_probs=202.3
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+.++|||+.|.+ -.|.+.++|.......+|+.|++.++. +..+... ....++.||.||++.+ .+.
T Consensus 98 f~nl~nLq~v~l----------~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se---~L~~l~alrslDLSrN-~is 162 (873)
T KOG4194|consen 98 FYNLPNLQEVNL----------NKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSE---ELSALPALRSLDLSRN-LIS 162 (873)
T ss_pred HhcCCcceeeee----------ccchhhhcccccccccceeEEeeeccc-cccccHH---HHHhHhhhhhhhhhhc-hhh
Confidence 456777777777 457778888888888888888888765 4432211 1245788888888875 445
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.++... +..=.++++|++++| .++.+ ..+.+..|.+|..|.++++ .++.+|... ...+|+|+.|++
T Consensus 163 ~i~~~s-fp~~~ni~~L~La~N-~It~l---------~~~~F~~lnsL~tlkLsrN-rittLp~r~--Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 163 EIPKPS-FPAKVNIKKLNLASN-RITTL---------ETGHFDSLNSLLTLKLSRN-RITTLPQRS--FKRLPKLESLDL 228 (873)
T ss_pred cccCCC-CCCCCCceEEeeccc-ccccc---------ccccccccchheeeecccC-cccccCHHH--hhhcchhhhhhc
Confidence 443222 445567888888887 55555 3444567778888888763 566665442 345788888888
Q ss_pred ecCCCccc------ccCCcceEEEecCCCCCcccC-----CCcceecc----CccccC-CcCCCCCCCcEEecccCCCce
Q 014100 174 ENCPDMET------FISNSVVHVTTDNKEPEKLTS-----EENFFLTD----QIQPLF-DEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 174 ~~c~~l~~------~~~~~L~~L~l~~~~~~~~~~-----~~~l~~~~----~~~~~~-~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.++. ++. -..++|+.|.+..|++..... +.+.+..+ ...++- ..+..+.+|+.|+++. +.+.
T Consensus 229 nrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~ 306 (873)
T KOG4194|consen 229 NRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQ 306 (873)
T ss_pred cccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhh
Confidence 7654 222 225677777777776543321 12222111 112221 1234466777777776 5666
Q ss_pred eecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchh
Q 014100 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.+..... ..+++|+.|+++. +.++.+++. +..+..|++|.+++. .+..+... .+..+.+|++|++... .+..
T Consensus 307 rih~d~W---sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~N-~ls~ 379 (873)
T KOG4194|consen 307 RIHIDSW---SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRSN-ELSW 379 (873)
T ss_pred eeecchh---hhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcCC-eEEE
Confidence 6666665 6667777777776 355555433 345667777777664 34444332 2445778888887663 3333
Q ss_pred hhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEeccc
Q 014100 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 392 (430)
.+ +.-+.....+++|++|++.+ ++++.++.. .+..++.|++|++.+...-..-|..+.++ .|+++.+..
T Consensus 380 ~I----EDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 380 CI----EDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EE----ecchhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 33 11112233488888899887 478877652 23458889999987765444444455555 788887733
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=3.4e-17 Score=158.01 Aligned_cols=274 Identities=22% Similarity=0.269 Sum_probs=175.3
Q ss_pred hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 42 KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 42 ~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
.+|..+..+..|..|+++++. +.+++.+. ..-+++-.|+++++ ++.+ +|..++-++..|-.||+++| .+..+
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~L----E~AKn~iVLNLS~N-~Iet-IPn~lfinLtDLLfLDLS~N-rLe~L 165 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNL----EYAKNSIVLNLSYN-NIET-IPNSLFINLTDLLFLDLSNN-RLEML 165 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhh----hhhcCcEEEEcccC-cccc-CCchHHHhhHhHhhhccccc-hhhhc
Confidence 477778888888888888665 66666555 56677777888775 4444 45555667778888888876 56655
Q ss_pred eccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc-ccc-----CCcceEEEecCC
Q 014100 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME-TFI-----SNSVVHVTTDNK 195 (430)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~-----~~~L~~L~l~~~ 195 (430)
|..+ ..+..|++|.+++++-. .+ ....+..+.+|++|.+++...-- .+| ..+|..++++.|
T Consensus 166 ---------PPQ~-RRL~~LqtL~Ls~NPL~-hf--QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 166 ---------PPQI-RRLSMLQTLKLSNNPLN-HF--QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred ---------CHHH-HHHhhhhhhhcCCChhh-HH--HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 5555 77888888888886632 22 11115566677788887765433 333 235777777777
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
++..++ .-+-.+++|+.|.|++ +.++.+.-. . ..-.+|++|+++. +.++.+|..+..++
T Consensus 233 ~Lp~vP---------------ecly~l~~LrrLNLS~-N~iteL~~~-~---~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 233 NLPIVP---------------ECLYKLRNLRRLNLSG-NKITELNMT-E---GEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCcch---------------HHHhhhhhhheeccCc-Cceeeeecc-H---HHHhhhhhhcccc-chhccchHHHhhhH
Confidence 765544 1233467788888877 466665322 1 4446777777777 46777777777777
Q ss_pred CCCEEEEccCCCcc--ccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC
Q 014100 276 NLATLEVSKCHGLI--NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 276 ~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 353 (430)
+|+.|.+... .++ -+|+ .++.+.+|+.+...+. .++- ++++..-+++|+.|.+. |+.+..+|...
T Consensus 292 kL~kLy~n~N-kL~FeGiPS--GIGKL~~Levf~aanN-~LEl--------VPEglcRC~kL~kL~L~-~NrLiTLPeaI 358 (1255)
T KOG0444|consen 292 KLTKLYANNN-KLTFEGIPS--GIGKLIQLEVFHAANN-KLEL--------VPEGLCRCVKLQKLKLD-HNRLITLPEAI 358 (1255)
T ss_pred HHHHHHhccC-cccccCCcc--chhhhhhhHHHHhhcc-cccc--------CchhhhhhHHHHHhccc-ccceeechhhh
Confidence 7777776543 333 3343 4666777777766553 3322 23344456777777775 35666777655
Q ss_pred cccCCCCccEEEeccCCCC
Q 014100 354 YALEFPSLEHVVVRQCPTM 372 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l 372 (430)
+. ++.|+.|+++..+++
T Consensus 359 Hl--L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 359 HL--LPDLKVLDLRENPNL 375 (1255)
T ss_pred hh--cCCcceeeccCCcCc
Confidence 55 677777777777766
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=2.9e-16 Score=150.63 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=177.8
Q ss_pred hhhhhhhhcccCC-CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMIGF-RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
|.+.+++..-.+- .++++|+++++. +..+-.+. ...+.+|..|.++++ .++.+++. .++.+++|+.|++..|
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~---F~~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN- 231 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH---FDSLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRN- 231 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccc-cccccccc---ccccchheeeecccC-cccccCHH-Hhhhcchhhhhhcccc-
Confidence 4445554443332 456666666544 44332222 134456666666664 44554433 3666777777777665
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccc------ccCCcceEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET------FISNSVVHV 190 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~------~~~~~L~~L 190 (430)
.++.+ ....+..+++|+.|.+.++ ++..+-.+. .-.+.++++|+++.+. ++. +..++|+.|
T Consensus 232 ~iriv---------e~ltFqgL~Sl~nlklqrN-~I~kL~DG~--Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 232 RIRIV---------EGLTFQGLPSLQNLKLQRN-DISKLDDGA--FYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred ceeee---------hhhhhcCchhhhhhhhhhc-CcccccCcc--eeeecccceeecccch-hhhhhcccccccchhhhh
Confidence 44333 2223466777777777653 344332222 3457778888887654 222 225678888
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT- 269 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~- 269 (430)
+++.|.+..+- .+....+++|+.|+|+. +.++.+.++.+ ..+..|+.|.+++. .++.+.+
T Consensus 299 ~lS~NaI~rih--------------~d~WsftqkL~~LdLs~-N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e~ 359 (873)
T KOG4194|consen 299 DLSYNAIQRIH--------------IDSWSFTQKLKELDLSS-NRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAEG 359 (873)
T ss_pred ccchhhhheee--------------cchhhhcccceeEeccc-cccccCChhHH---HHHHHhhhhccccc-chHHHHhh
Confidence 88888765433 12345678999999998 69999988888 88999999999984 5665543
Q ss_pred CcccCCCCCEEEEccCCC---ccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCC
Q 014100 270 PSWHLENLATLEVSKCHG---LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL 346 (430)
Q Consensus 270 ~~~~l~~L~~L~l~~c~~---l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 346 (430)
.+..+.+|++|+++...- +++... .+.++++|+.|.+.+ ++++.|... ....++.|++|++.+.+ +
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~--~f~gl~~LrkL~l~g-Nqlk~I~kr-------Afsgl~~LE~LdL~~Na-i 428 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAV--AFNGLPSLRKLRLTG-NQLKSIPKR-------AFSGLEALEHLDLGDNA-I 428 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchh--hhccchhhhheeecC-ceeeecchh-------hhccCcccceecCCCCc-c
Confidence 345778999999987431 233211 245699999999987 577777532 22338889999998754 5
Q ss_pred ceecCCCcccCCCCccEEEec------cCCCCccccCCC
Q 014100 347 TSFCLGNYALEFPSLEHVVVR------QCPTMKIFSQGV 379 (430)
Q Consensus 347 ~~~~~~~~~~~~~~L~~L~l~------~c~~l~~l~~~~ 379 (430)
.++-... +.++ .|++|.+. +| ++..++.|+
T Consensus 429 aSIq~nA-Fe~m-~Lk~Lv~nSssflCDC-ql~Wl~qWl 464 (873)
T KOG4194|consen 429 ASIQPNA-FEPM-ELKELVMNSSSFLCDC-QLKWLAQWL 464 (873)
T ss_pred eeecccc-cccc-hhhhhhhcccceEEec-cHHHHHHHH
Confidence 5554422 2223 78888764 34 455666664
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.50 E-value=1.9e-16 Score=146.38 Aligned_cols=288 Identities=16% Similarity=0.184 Sum_probs=189.4
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
..||.|++++|........-.+...+||+++|.+.+|.++++..- .++...+++|+.|++..|..|++....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~--------~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL--------LSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH--------HHHHHhcchhhhhhhcccchhHHHHHH
Confidence 357888888886655544444577788888888888876654311 122456788888888888877766432
Q ss_pred cccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
.. ...+++|++++++.|+.++... +..++.+...||.-.+.- .+....+..+-+.++++.
T Consensus 210 ~l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le------------~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 210 YL-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE------------ALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HH-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH------------HHHHHhccChHhhccchh
Confidence 22 4568888888888888766532 223555555555432211 011123456677788888
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCccccccc--CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
.|..+++.. .+.+...+..|+.|..++|...++.+ .-..+.++|+.+.+.+|..+.+........+++.|+.+++.
T Consensus 277 ~c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 277 HCNQLTDED--LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhccccchH--HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 887777643 22233667889999999988876433 22336788999999999888877655566788899999998
Q ss_pred ccccchhhhcccccccCCcceeecccceeecccCCCCceecC---CCcccCCCCccEEEeccCCCCcccc-CCCcCCCCc
Q 014100 310 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKL 385 (430)
Q Consensus 310 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L 385 (430)
+|....+-. .......++.|+.|.+++|..+++-.. +........|+.+++++|+.++.-. .....+++|
T Consensus 355 ~~~~~~d~t------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 355 ECGLITDGT------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred ccceehhhh------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 887665531 111234488899999998877766511 1122236678899999998887533 234567889
Q ss_pred eEEecccCCC
Q 014100 386 NKVKPTEEED 395 (430)
Q Consensus 386 ~~l~l~~~~~ 395 (430)
+.|++.+|+.
T Consensus 429 eri~l~~~q~ 438 (483)
T KOG4341|consen 429 ERIELIDCQD 438 (483)
T ss_pred ceeeeechhh
Confidence 9988877664
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.43 E-value=1.3e-15 Score=141.04 Aligned_cols=313 Identities=18% Similarity=0.171 Sum_probs=212.6
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
..|+.|.+.+|..+.+-.... ....+|+++.|.+++|.++++..-.++.+.|++|+.|++..|..++...- .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L----k-- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL----K-- 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH----H--
Confidence 468999999998666433222 22578999999999998888766666788899999999999988765511 1
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCCcccCC
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~ 203 (430)
.+...+++|++|+++.|+.++.-..... ..++..++++...+|.....-. ..-+.++++..|+....
T Consensus 210 --~la~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--- 283 (483)
T KOG4341|consen 210 --YLAEGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--- 283 (483)
T ss_pred --HHHHhhhhHHHhhhccCchhhcCcchHH-hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---
Confidence 1236789999999999987765210100 2345567777777776554322 22344555556653221
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccc--cCCcccCCCCCEEE
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL--VTPSWHLENLATLE 281 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~ 281 (430)
..++.-...+..|+.|+.++|.++++.....+. ..+.+|+.+.+.+|..+++. .....+.+.|+.++
T Consensus 284 ---------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 284 ---------EDLWLIACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred ---------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 112222345778999999999887776544442 66799999999999887743 22234778999999
Q ss_pred EccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCc
Q 014100 282 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 361 (430)
Q Consensus 282 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 361 (430)
+.+|....+........+++.|+.|.+++|..+++.-.. ...........|+.+++.+||.+++-..+ ....++.|
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~L 428 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---HLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNL 428 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh---hhhhccccccccceeeecCCCCchHHHHH-HHhhCccc
Confidence 999987766533345678999999999999888775111 01112234677999999999998775432 33458999
Q ss_pred cEEEeccCCCCccccCC--CcCCCCceEEeccc
Q 014100 362 EHVVVRQCPTMKIFSQG--VVDAPKLNKVKPTE 392 (430)
Q Consensus 362 ~~L~l~~c~~l~~l~~~--~~~~~~L~~l~l~~ 392 (430)
|++++.+|..++.-+.. ..++|+.+...+.+
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 99999999887654332 34567777666533
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=4.2e-12 Score=131.18 Aligned_cols=254 Identities=18% Similarity=0.128 Sum_probs=145.4
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.+-..|+++++. +..++... .++|+.|++.++ +++.++. ..++|++|++++| .+..+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsL--------- 257 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL--------- 257 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcch------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcc---------
Confidence 446677877764 55544322 347888888876 5666433 2578888888887 66655
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. ..++|+.|++.++ .+..++. .+.+|+.|++.+|. ++.+| +++|+.|++++|.+.+++.
T Consensus 258 P~----lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~------ 319 (788)
T PRK15387 258 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPA------ 319 (788)
T ss_pred cC----cccccceeeccCC-chhhhhh------chhhcCEEECcCCc-cccccccccccceeECCCCccccCCC------
Confidence 22 2367788888775 3555532 23567778887764 55565 4678888888877665431
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCc
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 288 (430)
..++|+.|+++++ .++.++. ...+|+.|+++++ .+..+|.. .++|+.|+++++ .+
T Consensus 320 ------------lp~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L 374 (788)
T PRK15387 320 ------------LPSELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RL 374 (788)
T ss_pred ------------CcccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhcc-cc
Confidence 1235666666653 4544431 1235667777663 45555432 235566666543 34
Q ss_pred cccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 014100 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..+|. ...+|+.|+++++ .+..+.. .+++|+.|+++++ .++.++.. ..+|+.|++++
T Consensus 375 ~~LP~-----l~~~L~~LdLs~N-~Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~ 431 (788)
T PRK15387 375 TSLPA-----LPSGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR 431 (788)
T ss_pred ccCcc-----cccccceEEecCC-cccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence 44442 1245666666654 2333210 1345666666664 35555421 24566666655
Q ss_pred CCCCccccCCCcCCCCceEEecccCC
Q 014100 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+ +++.+|..+..+++|+.+++++++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 3 455666666666667777766654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=1e-14 Score=134.34 Aligned_cols=331 Identities=15% Similarity=0.139 Sum_probs=187.3
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|++++.+.+|+.|++..+. +..++ ....+..|+.+++..+ ..+..|.....++++|.+||+.+| +
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-----ef~gcs~L~Elh~g~N--~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNK-IRFLP-----EFPGCSLLKELHVGEN--QIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcc-cccCC-----CCCccHHHHHHHhccc--HHHhhHHHHhcccccceeeecccc-c
Confidence 5566777888888888888877665 44333 1246777888887763 344456666778888888888887 6
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CC---cceE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SN---SVVH 189 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~---~L~~ 189 (430)
++++ |.++ ..+.+|++|+++++ .++..|.. .+++ .|+.|.+.+++ ++.+- .. -|++
T Consensus 264 lke~---------Pde~-clLrsL~rLDlSNN-~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 264 LKEV---------PDEI-CLLRSLERLDLSNN-DISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccC---------chHH-HHhhhhhhhcccCC-ccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 7777 6665 66777888888864 57777666 6677 77888777766 22111 10 1222
Q ss_pred EEe--cCCCCCcccCCCcceeccC-ccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeecc------
Q 014100 190 VTT--DNKEPEKLTSEENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE------ 260 (430)
Q Consensus 190 L~l--~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~------ 260 (430)
|+= .+.++......+.-. .+ -...|...-...+.+.|++++ .+++.++.+.+.+. .-.-....+++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~--~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~-~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETA--MTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA-KSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHhhccCCCCCCccccccc--CCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh-hhcceEEEecccchHhhh
Confidence 211 000000000000000 00 011122222234566666666 35666655544321 111233333333
Q ss_pred -----------------CcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccccc
Q 014100 261 -----------------CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVG 323 (430)
Q Consensus 261 -----------------c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 323 (430)
...++.+|..+..+++|..|++++ +-+.++|.. .+.+..|+.|+++.. ....++
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP----- 474 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLP----- 474 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh--hhhhhhhheeccccc-ccccch-----
Confidence 233334444556777888888865 346677764 456777888888764 222211
Q ss_pred ccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCCCCCccccc
Q 014100 324 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWE 403 (430)
Q Consensus 324 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 403 (430)
.-..-+-.++.+- ..-..+..++.. +...+.+|.+|++.+ ..+..+|...+++.+|++++++|++.....-..-
T Consensus 475 ---~~~y~lq~lEtll-as~nqi~~vd~~-~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 475 ---ECLYELQTLETLL-ASNNQIGSVDPS-GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred ---HHHhhHHHHHHHH-hccccccccChH-HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccCCCHHHHh
Confidence 1100011222222 233456666653 344578899999965 5677899999999999999999988765555554
Q ss_pred CchHHHHHH
Q 014100 404 GNLNDTIKK 412 (430)
Q Consensus 404 ~~~~~~i~~ 412 (430)
+....+|-+
T Consensus 549 mkgT~aiL~ 557 (565)
T KOG0472|consen 549 MKGTAAILS 557 (565)
T ss_pred ccChHHHHH
Confidence 444444433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=8.7e-14 Score=140.37 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=130.1
Q ss_pred CCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccC-------CCcceec------------------------
Q 014100 164 EMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS-------EENFFLT------------------------ 209 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~-------~~~l~~~------------------------ 209 (430)
.-++|+.|....|+-.+..+ +.++++++++.+.+...++ ++.+...
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 34566666666666544333 4577788777766443331 1111110
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhh----------------------hhcccccEEeeccCcccccc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN----------------------KAFANLIRLKISECSKLQKL 267 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l 267 (430)
++..-+......+.+|++|+|.. +++.+++...+... ...+.|+.|.+.+...-...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 02233333445577888888877 46666554322111 22344455555554333344
Q ss_pred cCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCc
Q 014100 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT 347 (430)
Q Consensus 268 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 347 (430)
.+.+.++.+|+.|+++.. .+..+|.. ...++..|++|++++ ++++.+. +....+++|+.|..-+ +.+.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas-~~~kle~LeeL~LSG-NkL~~Lp--------~tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPAS-KLRKLEELEELNLSG-NKLTTLP--------DTVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHH-HHhchHHhHHHhccc-chhhhhh--------HHHHhhhhhHHHhhcC-Ccee
Confidence 566778889999999874 46767654 357789999999988 4677765 1333477788777654 4577
Q ss_pred eecCCCcccCCCCccEEEeccCCCCccccCCCc-CCCCceEEecccCC
Q 014100 348 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEEE 394 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~l~l~~~~ 394 (430)
.+|. ...++.|+.++++ |.++..+-.... ..|+|++++++|+.
T Consensus 444 ~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFPE---LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred echh---hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 7772 2348999999995 667765433322 23899999999986
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=5.9e-12 Score=130.14 Aligned_cols=245 Identities=17% Similarity=0.122 Sum_probs=169.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+. ++|+.|.+.++. ++.++ ...++|++|+++++ +++.+++. .++|+.|++++| .
T Consensus 211 ~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP-------~lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 211 SGLTTLPDCLP--AHITTLVIPDNN-LTSLP-------ALPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-P 273 (788)
T ss_pred CCCCcCCcchh--cCCCEEEccCCc-CCCCC-------CCCCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-c
Confidence 45667777664 489999999765 66533 23589999999987 67765432 468999999988 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNK 195 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~ 195 (430)
+..+ |. .+++|+.|++.++ .++.+|. ..++|+.|+++++. ++.+| +.+|+.|++++|
T Consensus 274 L~~L---------p~----lp~~L~~L~Ls~N-~Lt~LP~------~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N 332 (788)
T PRK15387 274 LTHL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN 332 (788)
T ss_pred hhhh---------hh----chhhcCEEECcCC-ccccccc------cccccceeECCCCc-cccCCCCcccccccccccC
Confidence 5555 22 2357888999885 5666643 24789999999874 66665 557888999888
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
.+.+++ ...++|+.|++++ ++++.++. ...+|+.|+++++ .+..+|.. ..
T Consensus 333 ~L~~LP------------------~lp~~Lq~LdLS~-N~Ls~LP~-------lp~~L~~L~Ls~N-~L~~LP~l---~~ 382 (788)
T PRK15387 333 QLTSLP------------------TLPSGLQELSVSD-NQLASLPT-------LPSELYKLWAYNN-RLTSLPAL---PS 382 (788)
T ss_pred cccccc------------------ccccccceEecCC-CccCCCCC-------CCcccceehhhcc-ccccCccc---cc
Confidence 876644 1235789999987 57777642 2357888888774 56666643 35
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA 355 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 355 (430)
+|+.|+++++ .+..+|. ..++|+.|+++++. +..+.. .+.+|+.|++.++ .++.++.. .
T Consensus 383 ~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~s--l 441 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPES--L 441 (788)
T ss_pred ccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChH--H
Confidence 7889999875 4665553 23678999998863 444421 1456788888774 67777753 3
Q ss_pred cCCCCccEEEeccCCC
Q 014100 356 LEFPSLEHVVVRQCPT 371 (430)
Q Consensus 356 ~~~~~L~~L~l~~c~~ 371 (430)
..+++|++|++++++.
T Consensus 442 ~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 442 IHLSSETTVNLEGNPL 457 (788)
T ss_pred hhccCCCeEECCCCCC
Confidence 4578899999988754
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=1.6e-14 Score=133.07 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=123.4
Q ss_pred cCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccc
Q 014100 218 EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 218 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 297 (430)
+.+.+.++..+++.+ ++++..++..+ .++.|+.|+... +.++.+|+.++.+.+|..|++.+ +.+..+|. +
T Consensus 155 ~~~~~~~l~~l~~~~-n~l~~l~~~~i----~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f 224 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEG-NKLKALPENHI----AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPE---F 224 (565)
T ss_pred HHHHHHHHHHhhccc-cchhhCCHHHH----HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCC---C
Confidence 455667888888877 57777766543 488999999866 57889999999999999999977 46777775 6
Q ss_pred ccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC
Q 014100 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 377 (430)
++|..|++|+++. +.++-+.. +....++++..|++.. ++++++|.+.+. +.+|++|++++ ..+..+|.
T Consensus 225 ~gcs~L~Elh~g~-N~i~~lpa-------e~~~~L~~l~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 225 PGCSLLKELHVGE-NQIEMLPA-------EHLKHLNSLLVLDLRD-NKLKEVPDEICL--LRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred CccHHHHHHHhcc-cHHHhhHH-------HHhcccccceeeeccc-cccccCchHHHH--hhhhhhhcccC-CccccCCc
Confidence 7899999999976 45554432 1344589999999998 589999987655 88999999987 47889999
Q ss_pred CCcCCCCceEEecccCCCCC
Q 014100 378 GVVDAPKLNKVKPTEEEDGD 397 (430)
Q Consensus 378 ~~~~~~~L~~l~l~~~~~~~ 397 (430)
..+++ .|+.+.+.|++...
T Consensus 293 sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccc-eeeehhhcCCchHH
Confidence 99888 89999998877543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=7.3e-11 Score=122.66 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=78.9
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+|+.|+++++ ++..++. .+ ..+|++|++++| .+..+ |..+ .++|+.|+++++ .+..+|..
T Consensus 200 ~L~~L~Ls~N-~LtsLP~-~l---~~nL~~L~Ls~N-~LtsL---------P~~l---~~~L~~L~Ls~N-~L~~LP~~- 259 (754)
T PRK15370 200 QITTLILDNN-ELKSLPE-NL---QGNIKTLYANSN-QLTSI---------PATL---PDTIQEMELSIN-RITELPER- 259 (754)
T ss_pred CCcEEEecCC-CCCcCCh-hh---ccCCCEEECCCC-ccccC---------Chhh---hccccEEECcCC-ccCcCChh-
Confidence 4556666554 4444322 21 235666666655 34433 2221 234555555554 23344322
Q ss_pred ccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
+ ..+|+.|+++++ .++.+| +.+|+.|++++|.+..++ ....++|+.|++++ +.+
T Consensus 260 --l--~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP-----------------~~lp~sL~~L~Ls~-N~L 316 (754)
T PRK15370 260 --L--PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLP-----------------AHLPSGITHLNVQS-NSL 316 (754)
T ss_pred --H--hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCc-----------------ccchhhHHHHHhcC-Ccc
Confidence 1 135556665533 344443 335666666665544432 01123455555555 244
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+.++. ...++|+.|.+.+| .++.+|..+ .++|+.|++++|. +..+|.. + .++|+.|++++|
T Consensus 317 t~LP~------~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~--l--p~~L~~LdLs~N 377 (754)
T PRK15370 317 TALPE------TLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ-ITVLPET--L--PPTITTLDVSRN 377 (754)
T ss_pred ccCCc------cccccceeccccCC-ccccCChhh--cCcccEEECCCCC-CCcCChh--h--cCCcCEEECCCC
Confidence 44321 11245555555554 234444322 2456666665542 3333321 1 245666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.3e-10 Score=120.92 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=170.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+...|++++. .++.+|. . + .++|+.|++++| .+..+ |..+ +++|+.|+++++ .++.+|..
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~-I--p~~L~~L~Ls~N-~LtsL---------P~~l---~~nL~~L~Ls~N-~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-C-I--PEQITTLILDNN-ELKSL---------PENL---QGNIKTLYANSN-QLTSIPAT 238 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-c-c--ccCCcEEEecCC-CCCcC---------Chhh---ccCCCEEECCCC-ccccCChh
Confidence 46778999886 5676543 2 2 357999999988 67666 4433 368999999986 57777543
Q ss_pred cccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCC
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 235 (430)
+ .+.|+.|++++|. ++.+| +.+|+.|++++|.+..++ . ..+++|+.|+++++ +
T Consensus 239 ---l--~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~L~~LP---------------~--~l~~sL~~L~Ls~N-~ 294 (754)
T PRK15370 239 ---L--PDTIQEMELSINR-ITELPERLPSALQSLDLFHNKISCLP---------------E--NLPEELRYLSVYDN-S 294 (754)
T ss_pred ---h--hccccEEECcCCc-cCcCChhHhCCCCEEECcCCccCccc---------------c--ccCCCCcEEECCCC-c
Confidence 2 3579999999886 55666 568999999998877654 1 22358999999985 7
Q ss_pred ceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccch
Q 014100 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE 315 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 315 (430)
++.++.. ..++|+.|+++++ .+..+|..+ .++|+.|++++|. ++.+|.. -.++|+.|++++|. +.
T Consensus 295 Lt~LP~~------lp~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~----l~~sL~~L~Ls~N~-L~ 359 (754)
T PRK15370 295 IRTLPAH------LPSGITHLNVQSN-SLTALPETL--PPGLKTLEAGENA-LTSLPAS----LPPELQVLDVSKNQ-IT 359 (754)
T ss_pred cccCccc------chhhHHHHHhcCC-ccccCCccc--cccceeccccCCc-cccCChh----hcCcccEEECCCCC-CC
Confidence 7776432 2257899999885 566666533 3689999998874 6666531 23799999999874 44
Q ss_pred hhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCC----cCCCCceEEecc
Q 014100 316 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV----VDAPKLNKVKPT 391 (430)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~l~l~ 391 (430)
.+. . ...++|+.|++.+| .++.++... .+.|+.|+++++ +++.+|..+ ...+++..+.+.
T Consensus 360 ~LP--------~--~lp~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 360 VLP--------E--TLPPTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred cCC--------h--hhcCCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 332 1 11468999999987 577776532 357999999886 566777654 234788899997
Q ss_pred cCCC
Q 014100 392 EEED 395 (430)
Q Consensus 392 ~~~~ 395 (430)
+++.
T Consensus 424 ~Npl 427 (754)
T PRK15370 424 YNPF 427 (754)
T ss_pred CCCc
Confidence 7653
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-10 Score=123.20 Aligned_cols=297 Identities=20% Similarity=0.275 Sum_probs=170.7
Q ss_pred cchhhhhhhhcccCCCCcceeecccccc-ceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 36 LNSTIQKCYEEMIGFRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 36 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
.++.+..++... .+++|+.|-+.+... +..+..+ ....+|.|+.||+++|..+..+|.. ++.+-+|++|++++
T Consensus 531 ~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 531 MNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGE---FFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSD 604 (889)
T ss_pred eccchhhccCCC-CCCccceEEEeecchhhhhcCHH---HHhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccC
Confidence 334555554443 334677777776542 2221111 1245778888888887776665433 67788888888877
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC-Cccccc------CCcc
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI------SNSV 187 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~~------~~~L 187 (430)
. .+..+ |.++ ++|.+|.+|++..+..+..++.. ...+++|++|.+..-. ..+..- ..+|
T Consensus 605 t-~I~~L---------P~~l-~~Lk~L~~Lnl~~~~~l~~~~~i---~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 605 T-GISHL---------PSGL-GNLKKLIYLNLEVTGRLESIPGI---LLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred C-Ccccc---------chHH-HHHHhhheeccccccccccccch---hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 5 55555 6666 77778888888776655554322 4457788888776543 000000 2233
Q ss_pred eEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc----EEecccCCCceeecccCchhhhhcccccEEeeccCcc
Q 014100 188 VHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR----YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+.+.++..+. . +.......++|. .+.+.++.. ... ...+ ..+.+|+.|.+.+|..
T Consensus 671 ~~ls~~~~s~-~---------------~~e~l~~~~~L~~~~~~l~~~~~~~-~~~-~~~~---~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 671 ENLSITISSV-L---------------LLEDLLGMTRLRSLLQSLSIEGCSK-RTL-ISSL---GSLGNLEELSILDCGI 729 (889)
T ss_pred hhheeecchh-H---------------hHhhhhhhHHHHHHhHhhhhccccc-cee-eccc---ccccCcceEEEEcCCC
Confidence 3333322221 0 001111222222 233322221 221 2223 7778899999998876
Q ss_pred cccccCC-----ccc-CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccc--ccccCCcceeeccc
Q 014100 264 LQKLVTP-----SWH-LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ--VGEEAKGCVVFEEL 335 (430)
Q Consensus 264 l~~l~~~-----~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~~~~~~~L 335 (430)
.+..... ... ++++..+.+.+|...+++.+ ....++|+.|++..|..+++++... ..........+.++
T Consensus 730 ~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 730 SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred chhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 5422111 112 55777888888888877764 3456899999999999998887443 01111123446677
Q ss_pred ceee-cccCCCCceecCCCcccCCCCccEEEeccCCCCccccCC
Q 014100 336 GYLG-LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 336 ~~L~-l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 378 (430)
+.+. +.+.+.+..+.... ..++.|+.+.+..||+++.+|..
T Consensus 807 ~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 807 EGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 7773 66666666665422 33677999999999999888765
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-11 Score=123.44 Aligned_cols=231 Identities=21% Similarity=0.292 Sum_probs=139.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+|++++++.. ++..+ | .++..+++|+.+++.+| .+..+ |..+ ....+|+.|.+..| .+..+|..
T Consensus 241 ~nl~~~dis~n-~l~~l-p-~wi~~~~nle~l~~n~N-~l~~l---------p~ri-~~~~~L~~l~~~~n-el~yip~~ 305 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNL-P-EWIGACANLEALNANHN-RLVAL---------PLRI-SRITSLVSLSAAYN-ELEYIPPF 305 (1081)
T ss_pred ccceeeecchh-hhhcc-h-HHHHhcccceEecccch-hHHhh---------HHHH-hhhhhHHHHHhhhh-hhhhCCCc
Confidence 47778888775 45554 4 55778888888888876 44444 3333 44556666666654 45555443
Q ss_pred cccccCCCCccEEEEecCCCcccccCC-------cceEEEecCCCCCcccCCC--------cceecc-C-ccccCCcCCC
Q 014100 159 TENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSEE--------NFFLTD-Q-IQPLFDEKVA 221 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~~~-------~L~~L~l~~~~~~~~~~~~--------~l~~~~-~-~~~~~~~~~~ 221 (430)
...+..|++|++..+. +..+|.. ++..|..+.+.+...+... .|...+ . ....|..+-+
T Consensus 306 ---le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 306 ---LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred ---ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 4456667777776543 4444421 2333333333322222110 111111 1 1233444566
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 301 (430)
+++|+.|.|++ +.+..++...+ .++..|+.|.+++ ++++.+|..+..+..|++|...+ +.+..+|. ...++
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe---~~~l~ 452 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE---LAQLP 452 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh---hhhcC
Confidence 77888888887 57887777666 7888888888888 47888887777778888876644 34566663 56788
Q ss_pred CccEEEEcccccchhhhcccccccCCcceeecccceeecccCCC
Q 014100 302 NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 302 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
.|+.+|++ |+.+..+.... ....++|++|++++.+.
T Consensus 453 qL~~lDlS-~N~L~~~~l~~-------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLSEVTLPE-------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEecc-cchhhhhhhhh-------hCCCcccceeeccCCcc
Confidence 88888884 46666654221 01127888888888765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=4e-09 Score=111.56 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=169.6
Q ss_pred hhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 40 IQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 40 ~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
+..++.+ +..++.|+.|++++|..+.+++... +.+-+||+|+++++ .+..+ |.+ +++++.|.+|++..+..+
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t-~I~~L-P~~-l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDT-GISHL-PSG-LGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHH----hhhhhhhcccccCC-Ccccc-chH-HHHHHhhheecccccccc
Confidence 5566544 5679999999999998888877776 78999999999987 56665 444 889999999999988766
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccc-cccccccCcccccCCCCccEEEEecCCCc--ccc-cCCc----ceEE
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLKRFCNFTENIIEMPELRYLAIENCPDM--ETF-ISNS----VVHV 190 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~~-~~~~----L~~L 190 (430)
..+ .++...+++|++|.+..-. ..+.. ....+..+.+|+.+.+..+... ..+ .... .+.+
T Consensus 632 ~~~----------~~i~~~L~~Lr~L~l~~s~~~~~~~--~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 632 ESI----------PGILLELQSLRVLRLPRSALSNDKL--LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred ccc----------cchhhhcccccEEEeeccccccchh--hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh
Confidence 554 2333568999999986522 11111 1111455667777777554430 111 1112 2233
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceee--cccCchhhhh-cccccEEeeccCcccccc
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL--WKENDESNKA-FANLIRLKISECSKLQKL 267 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~~~-l~~L~~L~l~~c~~l~~l 267 (430)
.+.++.... .....+.+++|+.|.+.+|...+.. +...... .. ++++..+.+.+|.....+
T Consensus 700 ~~~~~~~~~---------------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~-~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 700 SIEGCSKRT---------------LISSLGSLGNLEELSILDCGISEIVIEWEESLIV-LLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhcccccce---------------eecccccccCcceEEEEcCCCchhhcccccccch-hhhHHHHHHHHhhcccccccc
Confidence 332322221 1134677889999999998553221 1111100 22 557777777777766654
Q ss_pred cCCcccCCCCCEEEEccCCCcccccccccccccc----------CccEE-EEcccccchhhhcccccccCCcceeecccc
Q 014100 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLV----------NLGRM-KIADCKMIEQIIQLQVGEEAKGCVVFEELG 336 (430)
Q Consensus 268 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~----------~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 336 (430)
......++|+.|.+..|..+.++... ...+. .++.+ .+.+...+.++. .....++.|+
T Consensus 764 -~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~--------~~~l~~~~l~ 832 (889)
T KOG4658|consen 764 -TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPFNKLEGLRMLCSLGGLPQLY--------WLPLSFLKLE 832 (889)
T ss_pred -chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEecccccccceeeecCCCCceeE--------ecccCccchh
Confidence 23346689999999999888876432 22223 33333 232222222221 1112244566
Q ss_pred eeecccCCCCceecCCCcccCCCCccEEEeccC-CCCccccCC
Q 014100 337 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC-PTMKIFSQG 378 (430)
Q Consensus 337 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c-~~l~~l~~~ 378 (430)
.+.+..||++.. +|.+..+.+.+| .++...|..
T Consensus 833 ~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 833 ELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred heehhcCccccc---------CccccccceeccccceeecCCc
Confidence 677777776543 456667777776 555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=1.8e-10 Score=94.83 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=108.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.++..|.++.+ +++..+|. +..+.||++|++++| +++++ |.++ ..+++|+.|++. +..+...|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~l---------p~~i-ssl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEEL---------PTSI-SSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhc---------Chhh-hhchhhhheecc-hhhhhcCc
Confidence 5677788888886 56666665 778999999999987 77777 7776 889999999986 56777777
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
.+ .+.+|.|+.|++.++. +..-. +.+ ....+..|+-|++++ +.+
T Consensus 96 rg---fgs~p~levldltynn-l~e~~-------------lpg------------------nff~m~tlralyl~d-ndf 139 (264)
T KOG0617|consen 96 RG---FGSFPALEVLDLTYNN-LNENS-------------LPG------------------NFFYMTTLRALYLGD-NDF 139 (264)
T ss_pred cc---cCCCchhhhhhccccc-ccccc-------------CCc------------------chhHHHHHHHHHhcC-CCc
Confidence 77 8899999999998865 22110 000 112234566666666 456
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 292 (430)
+.+++.. ..+++|+.|.+.+. .+-++|..++.+..|++|+|.+. .++.+|
T Consensus 140 e~lp~dv----g~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 140 EILPPDV----GKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ccCChhh----hhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence 6654432 66777777777663 45556666777777777777664 344443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.2e-09 Score=104.08 Aligned_cols=93 Identities=17% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCCCccEEEeecCcCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
.+.+|++|++++| .+.... ....+...++|++++++++.. .... .+....+.. +..+++|+.|+++++....
T Consensus 21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~--~~~~~~~~~-l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 21 KLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNET-GRIP--RGLQSLLQG-LTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccccc-CCcc--hHHHHHHHH-HHhcCceeEEEccCCCCCh
Confidence 3556778888776 332211 111244566677777776632 2100 000000111 2345677777777654322
Q ss_pred ccccCcccccCC---CCccEEEEecCC
Q 014100 154 RFCNFTENIIEM---PELRYLAIENCP 177 (430)
Q Consensus 154 ~~~~~~~~~~~l---~~L~~L~l~~c~ 177 (430)
..+.. +..+ ++|++|++++|.
T Consensus 96 ~~~~~---~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 96 DGCGV---LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred hHHHH---HHHHhccCcccEEEeeCCc
Confidence 22111 1122 336666666654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1.3e-09 Score=103.86 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=43.6
Q ss_pred CCCCcEEecccCCCceeecccCc-hhhhhcccccEEeeccCcccc-c---ccCCc-ccCCCCCEEEEccCCCccccc---
Q 014100 222 FPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ-K---LVTPS-WHLENLATLEVSKCHGLINVL--- 292 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~-~---l~~~~-~~l~~L~~L~l~~c~~l~~~~--- 292 (430)
+++|+.|++++| .++......+ .....+++|+.|++++|..-. . +.... ...+.|+.|++.+|. +++..
T Consensus 192 ~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~ 269 (319)
T cd00116 192 NCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKD 269 (319)
T ss_pred CCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHH
Confidence 457777777765 3332221111 011445667777777764322 1 10000 023677888887764 32110
Q ss_pred cccccccccCccEEEEcccc
Q 014100 293 TLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~ 312 (430)
.......+++|++++++++.
T Consensus 270 l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhcCCCccEEECCCCC
Confidence 00123345677888887754
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.65 E-value=7.8e-10 Score=91.14 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+..+|..+..+.+|+.|+++++. +++++... +++++|+.|.+.-+ .+.. .|-+ ++.+|-|++||+++|.
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i----ssl~klr~lnvgmn-rl~~-lprg-fgs~p~levldltynn 113 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI----SSLPKLRILNVGMN-RLNI-LPRG-FGSFPALEVLDLTYNN 113 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccch-hhhcChhh----hhchhhhheecchh-hhhc-Cccc-cCCCchhhhhhccccc
Confidence 35566777777778888888887543 66655444 67888888877643 3333 3444 6678888888888763
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVT 191 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~ 191 (430)
+.+-. .|..+ ..+..|+.|+++++ ..+-+|.. ++.+.+|+.|.+.++.-+ .+| .+.|++|+
T Consensus 114 -l~e~~-------lpgnf-f~m~tlralyl~dn-dfe~lp~d---vg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 114 -LNENS-------LPGNF-FYMTTLRALYLGDN-DFEILPPD---VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred -ccccc-------CCcch-hHHHHHHHHHhcCC-CcccCChh---hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 32211 02322 44566777777764 34445544 677777777777776533 334 45677777
Q ss_pred ecCCCCCccc
Q 014100 192 TDNKEPEKLT 201 (430)
Q Consensus 192 l~~~~~~~~~ 201 (430)
+.||-+..++
T Consensus 180 iqgnrl~vlp 189 (264)
T KOG0617|consen 180 IQGNRLTVLP 189 (264)
T ss_pred cccceeeecC
Confidence 7777655443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-08 Score=95.48 Aligned_cols=204 Identities=17% Similarity=0.207 Sum_probs=123.1
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC--chhHHhhcCCCCEEEEecCCCccEeeccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 125 (430)
..+++|+...|.+++ +...... .-...|++++.|+++. ++...+ ...++..+|+|+.|+++.|. +....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~--~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~--- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE--EYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI--- 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh--hhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhccccccc-ccCCc---
Confidence 367888888888776 5532211 1125688999999987 444323 34467789999999999874 32221
Q ss_pred cccCCcCCCcccccccceeecccccc-ccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCc
Q 014100 126 ELNADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 126 ~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~ 199 (430)
.......++.|+.|.+++|.. +.++-. ....||+|+.|.+..+..+.... +..|+.|++++|.+..
T Consensus 189 -----~s~~~~~l~~lK~L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 189 -----SSNTTLLLSHLKQLVLNSCGLSWKDVQW---ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred -----cccchhhhhhhheEEeccCCCCHHHHHH---HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 111124578899999988852 222211 15678999999998875333222 4468888998888665
Q ss_pred ccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeeccc---CchhhhhcccccEEeeccCccccccc--CCcccC
Q 014100 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKE---NDESNKAFANLIRLKISECSKLQKLV--TPSWHL 274 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l 274 (430)
... +.-.+.+|.|+.|.++.+ .+.++... +......+++|++|.+...+ +.+++ ..+..+
T Consensus 261 ~~~-------------~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 261 FDQ-------------GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTL 325 (505)
T ss_pred ccc-------------ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhcc
Confidence 431 123567888888888875 44444221 11112556788888887643 32221 223344
Q ss_pred CCCCEEEEc
Q 014100 275 ENLATLEVS 283 (430)
Q Consensus 275 ~~L~~L~l~ 283 (430)
++|+.|.+.
T Consensus 326 ~nlk~l~~~ 334 (505)
T KOG3207|consen 326 ENLKHLRIT 334 (505)
T ss_pred chhhhhhcc
Confidence 555665543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.7e-08 Score=93.55 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.++.+|+.+.+.+|+ +...+.......|++++.||+++| -+..... + ..+...||+|+.|+++.+. +...
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~---v----~~i~eqLp~Le~LNls~Nr-l~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP---V----LKIAEQLPSLENLNLSSNR-LSNF 187 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHH---H----HHHHHhcccchhccccccc-ccCC
Confidence 468889999999874 443332245778999999999987 3322211 1 1235678999999998753 3222
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCC
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKE 196 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~ 196 (430)
. +......++.|+.|.+..|.- +.-. .|+++.|.+..|+
T Consensus 188 ~-~s~~~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 188 I-SSNTTLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred c-cccchhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhccc
Confidence 1 111144677888888888762 2111 4556666666554
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.3e-09 Score=94.86 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=83.0
Q ss_pred ccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCC-cccCCCcce
Q 014100 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPE-KLTSEENFF 207 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~-~~~~~~~l~ 207 (430)
..|.+|+.|++++..--..+... +..=.+|+.|+++.|.+++.+. +..|.+|+++.|... ....
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt----- 278 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT----- 278 (419)
T ss_pred HHHHhhhhccccccccCcHHHHH---HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-----
Confidence 44555666666554322222111 3344456666666666655544 445666666666522 1110
Q ss_pred eccCccccCCcCCCCCCCcEEecccCCCceeecccCchh-hhhcccccEEeeccCccccc-ccCCcccCCCCCEEEEccC
Q 014100 208 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDES-NKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c 285 (430)
-. -...-++|+.|.+++|.. .+....+.. ...+++|..|++++|..+.. ....+..|+.|++|.++.|
T Consensus 279 ------v~--V~hise~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 279 ------VA--VAHISETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred ------HH--HhhhchhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 00 011235777777776632 111111111 16677788888877766652 2234557777888888888
Q ss_pred CCccccccccccccccCccEEEEcccc
Q 014100 286 HGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 286 ~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+-.-... .+.+.|.|.+|++.+|-
T Consensus 349 Y~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 349 YDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCCChHHee-eeccCcceEEEEecccc
Confidence 654321111 24567888888888773
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-08 Score=89.75 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=103.5
Q ss_pred CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCc
Q 014100 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303 (430)
Q Consensus 224 ~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 303 (430)
+|+.|||+. ..++.- ....++..|..|+.|.+.+...-+.+-..+..-.+|+.|+++.|++++......+..+|..|
T Consensus 186 Rlq~lDLS~-s~it~s--tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVS--TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcch-hheeHH--HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 577777776 233331 12223366777888888775433333334445567888888888887766555556778888
Q ss_pred cEEEEcccccchhhhcccccccCC---------------------cceeecccceeecccCCCCceecCCCcccCCCCcc
Q 014100 304 GRMKIADCKMIEQIIQLQVGEEAK---------------------GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 362 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~---------------------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 362 (430)
++|++++|...++++..-+..+.+ ....+|.|.+|+++.|..++.-+. ..+..|+.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchhe
Confidence 888888886555443111000000 012367788888888777765322 1234589999
Q ss_pred EEEeccCCCCcc-ccCCCcCCCCceEEecccCC
Q 014100 363 HVVVRQCPTMKI-FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 363 ~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~~~~ 394 (430)
+|.++.|..+-. .-.++...|+|.++++.|+-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999999976631 11345578999999998864
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=3.8e-07 Score=77.91 Aligned_cols=108 Identities=21% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
...++++|+++++. ++.+- .. ...+.+|+.|++++| .+..+.. +..+++|++|++++| .+.++
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L---~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i------- 79 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NL---GATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSI------- 79 (175)
T ss_dssp ---------------------S-----TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S--------
T ss_pred cccccccccccccc-ccccc-ch---hhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCcc-------
Confidence 33457777777765 55431 11 024677778888776 4554332 456777888888776 45444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+.++...+|+|++|+++++ .+.++..- ..+..+++|+.|++.++|
T Consensus 80 --~~~l~~~lp~L~~L~L~~N-~I~~l~~l-~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 --SEGLDKNLPNLQELYLSNN-KISDLNEL-EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS----SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred --ccchHHhCCcCCEEECcCC-cCCChHHh-HHHHcCCCcceeeccCCc
Confidence 1122235677888877763 34443221 115566777777776665
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.29 E-value=3.9e-08 Score=99.13 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=33.9
Q ss_pred HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc-cccccccc--cCcccccCCCCccEEEEecCC
Q 014100 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD-LPKLKRFC--NFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~ 177 (430)
...+++|+.|.+.+|..+.... + ..+...++.|+.|++.+ +......+ ... ....+++|+.|++..|.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~----~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS----L----DALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCG 254 (482)
T ss_pred HhhCchhhHhhhcccccCChhh----H----HHHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhh
Confidence 3345666666666665554320 0 11124556666666655 22221111 000 13345666666666665
Q ss_pred Cccc
Q 014100 178 DMET 181 (430)
Q Consensus 178 ~l~~ 181 (430)
.+++
T Consensus 255 ~isd 258 (482)
T KOG1947|consen 255 LVTD 258 (482)
T ss_pred ccCc
Confidence 4443
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.18 E-value=5e-08 Score=98.28 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC-CCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
+++|+.|.+.+|..+....-..+...+++|+.|++++| ....... .. ...+...+++|+.|++..+..+++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~--~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LL--LLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hH--hhhhhhhcCCcCccchhhhhccCchh
Confidence 56666666666655554322233556666666666653 1111110 00 00112445666666666655444331
Q ss_pred cCcccccCCCCccEEEEecCCCcc
Q 014100 157 NFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~ 180 (430)
.... ...+++|++|.+.+|..++
T Consensus 261 l~~l-~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 261 LSAL-ASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHH-HhhCCCcceEccCCCCccc
Confidence 1111 1236666666666666543
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=9.2e-06 Score=77.98 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcc
Q 014100 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+..++.|++++|.+..++ ...++|++|.+.+|++++.++. ...++|++|.+++|..
T Consensus 51 ~~~l~~L~Is~c~L~sLP------------------~LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP------------------VLPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPE 106 (426)
T ss_pred hcCCCEEEeCCCCCcccC------------------CCCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccc
Confidence 456677777777544422 2234677777777777665532 1224677777777766
Q ss_pred cccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 264 LQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 264 l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
+..+|. +|+.|++.+ .....+.. --++|++|.+.+........ . ....+++|+.|.+.+|
T Consensus 107 L~sLP~------sLe~L~L~~-n~~~~L~~-----LPssLk~L~I~~~n~~~~~~------l--p~~LPsSLk~L~Is~c 166 (426)
T PRK15386 107 ISGLPE------SVRSLEIKG-SATDSIKN-----VPNGLTSLSINSYNPENQAR------I--DNLISPSLKTLSLTGC 166 (426)
T ss_pred cccccc------ccceEEeCC-CCCccccc-----CcchHhheeccccccccccc------c--ccccCCcccEEEecCC
Confidence 655543 355555542 22222211 01345666664322110000 0 0112467777888777
Q ss_pred CCCceecCCCcccCCCCccEEEeccC
Q 014100 344 PSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 344 ~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
..+. ++.+. -.+|+.|.+..+
T Consensus 167 ~~i~-LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII-LPEKL----PESLQSITLHIE 187 (426)
T ss_pred Cccc-Ccccc----cccCcEEEeccc
Confidence 6442 22211 246777777553
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=5.4e-06 Score=57.88 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
|+|++|++++| ++..+++ ..+.++++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i---------~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSI---------PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEE---------ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCcc---------CHHHHcCCCCCCEEeCcCC
Confidence 35555666555 4444433 22555666666666654 44444 3334455555666555554
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=3.2e-05 Score=74.34 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=19.1
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
+.+++.|++++| ++..++. + -++|++|.+++|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---L--P~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---L--PNELTEITIENCNNLTTL 88 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---C--CCCCcEEEccCCCCcccC
Confidence 455566666655 4444321 1 124666666655555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.05 E-value=3.5e-06 Score=72.03 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=49.6
Q ss_pred hhhhhhhhccc-CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMI-GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
+.|+.+ +.+. .+.+|+.|+++++. ++.+. +. ..+++|+.|+++++ .+..+.+ .+...+++|++|.+++|
T Consensus 29 n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l----~~L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N- 98 (175)
T PF14580_consen 29 NQISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GL----PGLPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNN- 98 (175)
T ss_dssp --------S--TT-TT--EEE-TTS---S--T-T--------TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS-
T ss_pred cccccc-cchhhhhcCCCEEECCCCC-Ccccc-Cc----cChhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCC-
Confidence 555555 4555 57899999999887 77542 33 57899999999987 5666433 33457999999999988
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
.+.++-. +. . ...+++|+.|++.++|-...--....-+..+|+|+.|+-...
T Consensus 99 ~I~~l~~---l~----~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 KISDLNE---LE----P-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ---SCCC---CG----G-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCChHH---hH----H-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 5554421 11 1 267899999999997743221111111456888888876543
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=1.9e-07 Score=86.91 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=54.1
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
.-..|+|..+ .++.+ |...++.+++|+.||+++| .+..| ....+..+++|.+|.+.+.+++++++.+.
T Consensus 68 ~tveirLdqN-~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I---------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSI-PPGAFKTLHRLRRLDLSKN-NISFI---------APDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccC-CcccC-Chhhccchhhhceeccccc-chhhc---------ChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4456677664 45554 4455888888888888887 66666 34445778888888887777788776543
Q ss_pred ccccCCCCccEEEEec
Q 014100 160 ENIIEMPELRYLAIEN 175 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~ 175 (430)
...+.+|+.|.+.-
T Consensus 136 --F~gL~slqrLllNa 149 (498)
T KOG4237|consen 136 --FGGLSSLQRLLLNA 149 (498)
T ss_pred --hhhHHHHHHHhcCh
Confidence 44555666655543
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.93 E-value=7.4e-07 Score=83.02 Aligned_cols=248 Identities=18% Similarity=0.185 Sum_probs=143.8
Q ss_pred cchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 36 LNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 36 ~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
..|.|+.||+. ...+++|+.|+++++. ++.|-... ...+++|-.|.+.+..+++. .|...+.++..|+.|.+..
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~A---F~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDA---FKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred ccCCcccCChhhccchhhhceecccccc-hhhcChHh---hhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcCh
Confidence 34788899866 6688999999999776 66532222 13456677777777556776 4556688888888888876
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----------
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----------- 183 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----------- 183 (430)
| .+..+ +...+..+++|..|.+.+. .+..++.+. ...+..++.+.+...+.+-+-.
T Consensus 150 n-~i~Ci---------r~~al~dL~~l~lLslyDn-~~q~i~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 150 N-HINCI---------RQDALRDLPSLSLLSLYDN-KIQSICKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred h-hhcch---------hHHHHHHhhhcchhcccch-hhhhhcccc--ccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 6 44443 3334466777777777663 445554321 4455566666655444221110
Q ss_pred -----------CCcceEEEecC-------CCCCcccCCCcceeccCccccC--CcCCCCCCCcEEecccCCCceeecccC
Q 014100 184 -----------SNSVVHVTTDN-------KEPEKLTSEENFFLTDQIQPLF--DEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 184 -----------~~~L~~L~l~~-------~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
+..+.+-++.. |...+..+ ++.-.+.....- .-.+.+++|++|++++ +.++.+....
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s--~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~a 293 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS--RLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGA 293 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH--hhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhh
Confidence 00111111100 00000000 000000000000 0135678999999988 6888887777
Q ss_pred chhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
+ .....++.|.+... .+..+.. .+..+..|+.|++++. .++.+.+. .+..+.+|.+|.+-.
T Consensus 294 F---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~-aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 294 F---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPG-AFQTLFSLSTLNLLS 355 (498)
T ss_pred h---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecc-cccccceeeeeehcc
Confidence 7 88888999998874 5554433 3447788999999885 46555433 355677778877643
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=8.6e-06 Score=73.49 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=39.9
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
....|.++.|+++. +.+..+.. + ..+++|+.|++++. .++.+-.+-..+-+.+.|.+.+. .+.++. .++
T Consensus 303 vKL~Pkir~L~lS~-N~i~~v~n--L---a~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS---GL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQ-NRIRTVQN--L---AELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQN-KIETLS---GLR 371 (490)
T ss_pred hhhccceeEEeccc-cceeeehh--h---hhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhh-hHhhhh---hhH
Confidence 34456666666665 34444322 2 55566666666652 33333222224445555555542 344433 244
Q ss_pred cccCccEEEEcc
Q 014100 299 SLVNLGRMKIAD 310 (430)
Q Consensus 299 ~l~~L~~L~l~~ 310 (430)
.+-+|..|++++
T Consensus 372 KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 372 KLYSLVNLDLSS 383 (490)
T ss_pred hhhhheeccccc
Confidence 555556666554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.67 E-value=4.7e-05 Score=74.85 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=83.8
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhc-CCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCL-NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
++.++.|++.+. .+..+++. ...+ ++|++|+++++ .+..+ |..+ ..+++|+.|++..+ .+.+++
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l---------~~~~-~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESL---------PSPL-RNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred ccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhh---------hhhh-hccccccccccCCc-hhhhhh
Confidence 345555555543 34443332 2223 25666666555 33333 1121 45556666666553 344443
Q ss_pred cCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
.. ....+.|+.|+++++. ++.+| +..|+++.+++|...... .....+.++..+.+.
T Consensus 180 ~~---~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------------~~~~~~~~l~~l~l~ 240 (394)
T COG4886 180 KL---LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELL---------------SSLSNLKNLSGLELS 240 (394)
T ss_pred hh---hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecc---------------hhhhhcccccccccC
Confidence 32 2245556666665543 44444 223666666666422211 123445555555544
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCc
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 288 (430)
+ +.+..+ +..+ ..++++++|+++++ .+..++. +..+.+++.|++++....
T Consensus 241 ~-n~~~~~-~~~~---~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 241 N-NKLEDL-PESI---GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred C-ceeeec-cchh---ccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence 3 233332 2222 56666777777764 5555544 667777888877765433
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=0.00015 Score=50.41 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
|+|++|+++++ +++.++...+ ..+++|++|+++++ .+..+++ .+..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555666553 5555555544 55555555555543 3344432 2345555555555544
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.3e-05 Score=81.32 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
-.+|++|++++...+..-|... ....+|+|+.|.+.+-. +....-..+..++|||..|||+++ ++..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-------- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNL-------- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHH--HhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCc--------
Confidence 4668888888765555445332 11457888888887642 222112234667888888888876 45444
Q ss_pred CcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
.++ +.+.+|+.|.+.+++... ...-. .+..+.+|+.|+|++-..
T Consensus 189 --~GI-S~LknLq~L~mrnLe~e~-~~~l~-~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 --SGI-SRLKNLQVLSMRNLEFES-YQDLI-DLFNLKKLRVLDISRDKN 232 (699)
T ss_pred --HHH-hccccHHHHhccCCCCCc-hhhHH-HHhcccCCCeeecccccc
Confidence 222 667788888777654222 11111 156778888888876543
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.49 E-value=6.4e-06 Score=80.34 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=74.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+.++|.+...|..|+.+.+..+. +..++... ..+..|.+|+++.+ .+.. .|.. +..|+ |++|.+++| +
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~N-qlS~-lp~~-lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSN-QLSH-LPDG-LCDLP-LKVLIVSNN-K 154 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccc-hhhc-CChh-hhcCc-ceeEEEecC-c
Confidence 6777888888888888888877554 44333333 66777778888775 3343 3433 33444 788888876 6
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
++.+ |..+ +..+.|..|+.+.| .+..++.. ++.+.+|+.|.+.++.
T Consensus 155 l~~l---------p~~i-g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 155 LTSL---------PEEI-GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRNH 200 (722)
T ss_pred cccC---------Cccc-ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhhh
Confidence 6666 6666 46677777777764 45555444 5666666666666544
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.48 E-value=8e-05 Score=73.17 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=114.5
Q ss_pred hhcccCCCCcceeeccccccceeeccCCCCCCCCC-CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEee
Q 014100 44 YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFF-NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 44 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 122 (430)
+..+..++.+..|++.+.. +.++.... ..+ ++|+.|++++. .+..++.. ++.+++|+.|++++| .+.++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~-i~~i~~~~----~~~~~nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l- 178 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN-ITDIPPLI----GLLKSNLKELDLSDN-KIESLPSP--LRNLPNLKNLDLSFN-DLSDL- 178 (394)
T ss_pred chhhhcccceeEEecCCcc-cccCcccc----ccchhhccccccccc-chhhhhhh--hhccccccccccCCc-hhhhh-
Confidence 3445566788888888665 55543333 445 38888888876 45544312 667888999999888 55555
Q ss_pred ccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCC
Q 014100 123 HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPE 198 (430)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~ 198 (430)
|... ...++|+.|++++. .+.+++.. +.....|+++.+.++..+.... ...+..+.+.++.+.
T Consensus 179 --------~~~~-~~~~~L~~L~ls~N-~i~~l~~~---~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 179 --------PKLL-SNLSNLNNLDLSGN-KISDLPPE---IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred --------hhhh-hhhhhhhheeccCC-ccccCchh---hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee
Confidence 2221 26788888888874 56666543 2344558888888775333332 334555555555544
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 265 (430)
... ...+.+++++.|++++ +.++++.. + ....+++.|++++.....
T Consensus 246 ~~~---------------~~~~~l~~l~~L~~s~-n~i~~i~~--~---~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 246 DLP---------------ESIGNLSNLETLDLSN-NQISSISS--L---GSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ecc---------------chhccccccceecccc-cccccccc--c---cccCccCEEeccCccccc
Confidence 321 2356677899999988 47888765 3 788899999998854433
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=1.5e-05 Score=77.92 Aligned_cols=138 Identities=16% Similarity=0.214 Sum_probs=95.4
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+.-+|+.+..+..|.+|+|+.+. ++.++.+. .+--|+.|.++++ +++.+++. ++..+.|..|+.+.|
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l-----C~lpLkvli~sNN-kl~~lp~~--ig~~~tl~~ld~s~n- 176 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL-----CDLPLKVLIVSNN-KLTSLPEE--IGLLPTLAHLDVSKN- 176 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccch-hhcCChhh-----hcCcceeEEEecC-ccccCCcc--cccchhHHHhhhhhh-
Confidence 37788899999999999999998654 66544433 3456888988876 66765544 557888999999988
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVT 191 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~ 191 (430)
.+..+ |..+ ..+.+|+.|++..+ .+.++|.. .. .-.|..|+++ |.++..+| ...|++|.
T Consensus 177 ei~sl---------psql-~~l~slr~l~vrRn-~l~~lp~E---l~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 177 EIQSL---------PSQL-GYLTSLRDLNVRRN-HLEDLPEE---LC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhc---------hHHh-hhHHHHHHHHHhhh-hhhhCCHH---Hh-CCceeeeecc-cCceeecchhhhhhhhheeee
Confidence 55555 4444 66777777777764 45555544 44 2236677776 55677777 45777888
Q ss_pred ecCCCCCcc
Q 014100 192 TDNKEPEKL 200 (430)
Q Consensus 192 l~~~~~~~~ 200 (430)
+++|++.+-
T Consensus 241 LenNPLqSP 249 (722)
T KOG0532|consen 241 LENNPLQSP 249 (722)
T ss_pred eccCCCCCC
Confidence 888876553
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.27 E-value=0.00015 Score=67.01 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=58.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccce-ee--ccCCCCCCCCCCCccEEEeecCcCCCcCC----chh------HHhhc
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQ-EI--WHGQALPVSFFNNLRHLVVDDCTNMLSAI----PAN------LIRCL 104 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~------~~~~l 104 (430)
...+-+.+.+.++..+++++|+++. +. .. |.+. ...+-++|+..++++- ++..+ |.. .+.++
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~--~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNT-FGTEAARAIAK--VLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCc-hhHHHHHHHHH--HHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcC
Confidence 4455666777888999999999876 32 10 1110 1134567888777762 23222 111 24467
Q ss_pred CCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 105 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
++|++|++|+|---...+ .++.+ +...+..|++|.+.+|
T Consensus 92 ~~L~~ldLSDNA~G~~g~--~~l~~----ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGI--RGLEE----LLSSCTDLEELYLNNC 130 (382)
T ss_pred CceeEeeccccccCccch--HHHHH----HHHhccCHHHHhhhcC
Confidence 899999999884321110 01111 1345678899998887
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=6.1e-05 Score=68.05 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccccEEeeccCcccc--cccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCc
Q 014100 251 ANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 328 (430)
+.+++++...|...- .+-.....||++..+.+..|+ ++..........+|.+-.|.++. .++.++-.. +.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HH
Confidence 456666666664322 111122356667666666664 44443333344455555555543 233333211 13
Q ss_pred ceeecccceeecccCCCCcee
Q 014100 329 CVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 329 ~~~~~~L~~L~l~~c~~l~~~ 349 (430)
...|+.|..|++.+.|-...+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HcCCchhheeeccCCcccccc
Confidence 334666666666666654433
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.06 E-value=0.00023 Score=74.00 Aligned_cols=34 Identities=38% Similarity=0.469 Sum_probs=15.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
+||||+.||++++ ++..+ ..++.++||++|.+.+
T Consensus 171 sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCC-CccCc---HHHhccccHHHHhccC
Confidence 4555555555554 33332 1144445555554443
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.02 E-value=0.001 Score=69.13 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred Ccceeeccccccce-eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 52 DIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.++.|+|+++. +. .++.. ...+++|+.|++++| .+....|.. +..+++|+.|++++|.-...+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~----i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i--------- 482 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPND----ISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSI--------- 482 (623)
T ss_pred EEEEEECCCCC-ccccCCHH----HhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCC---------
Confidence 36777777665 33 22222 256788888888887 455444443 677888888888887433333
Q ss_pred cCCCcccccccceeeccccccccccccCcccccC-CCCccEEEEecCCCcc
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDME 180 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-l~~L~~L~l~~c~~l~ 180 (430)
|..+ ..+++|+.|+++++.....+|.. +.. ..++..+++.++..+-
T Consensus 483 P~~l-~~L~~L~~L~Ls~N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 483 PESL-GQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred chHH-hcCCCCCEEECcCCcccccCChH---HhhccccCceEEecCCcccc
Confidence 4444 67788888888877655555544 222 3456677777665443
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.97 E-value=0.00015 Score=65.69 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=8.3
Q ss_pred ccCCCCccEEEEecCC
Q 014100 162 IIEMPELRYLAIENCP 177 (430)
Q Consensus 162 ~~~l~~L~~L~l~~c~ 177 (430)
++++|.|+.+.+.+++
T Consensus 395 IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccHHHHHhhcCCC
Confidence 4555555555555444
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.92 E-value=0.0017 Score=67.44 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred ccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc
Q 014100 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
++.|+++++ .+....|.. +..+++|+.|++++|.-...+ |..+ ..+++|+.|+++++.....+|..
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~i---------P~~~-~~l~~L~~LdLs~N~lsg~iP~~-- 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNI---------PPSL-GSITSLEVLDLSYNSFNGSIPES-- 485 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcC---------ChHH-hCCCCCCEEECCCCCCCCCCchH--
Confidence 677888876 455445544 677888889988887433333 4443 77888888888887544455544
Q ss_pred cccCCCCccEEEEecCCC
Q 014100 161 NIIEMPELRYLAIENCPD 178 (430)
Q Consensus 161 ~~~~l~~L~~L~l~~c~~ 178 (430)
+..+++|+.|++++|..
T Consensus 486 -l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 486 -LGQLTSLRILNLNGNSL 502 (623)
T ss_pred -HhcCCCCCEEECcCCcc
Confidence 67788888888887753
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.81 E-value=0.0018 Score=41.55 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
++|++|+++++ .+..+++. +++|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 46788888876 56665442 667888888888887 45444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.0034 Score=57.06 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 43 CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 43 l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+..-+..+|+|+.|+++.++ +....... + ....+|+.|.+.+. .+.-....+....+|.+++|.++.|
T Consensus 89 I~~ile~lP~l~~LNls~N~-L~s~I~~l--p-~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNS-LSSDIKSL--P-LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHhcCccceEeeccCCc-CCCccccC--c-ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 33334566677777776443 44211111 1 23446667766654 2221112233555666666666655
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.09 E-value=0.0012 Score=65.22 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.1
Q ss_pred ccCCCCcceeecccc
Q 014100 47 MIGFRDIKYLQLGHF 61 (430)
Q Consensus 47 l~~~~~L~~L~l~~~ 61 (430)
+..+.+|+.|++.++
T Consensus 91 l~~~~~l~~l~l~~n 105 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN 105 (414)
T ss_pred cccccceeeeecccc
Confidence 444445555554443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.83 E-value=0.00014 Score=73.36 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 284 (430)
..++.|++|||+. +.+..++--.. ..+. |+.|.+.+. .++.+ .++.++.+|+.|+++.
T Consensus 206 r~l~~LkhLDlsy-N~L~~vp~l~~---~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSY-NCLRHVPQLSM---VGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred Hhccccccccccc-chhccccccch---hhhh-heeeeeccc-HHHhh-hhHHhhhhhhccchhH
Confidence 3455666666654 34444432221 2222 555555552 33333 2344555555555543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.66 E-value=0.024 Score=48.86 Aligned_cols=107 Identities=24% Similarity=0.303 Sum_probs=54.5
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+...++|+++. +.++ .....+++|..|.+.++ .++.+.|. +...+++|+.|.+.+| ++..+.+++.+
T Consensus 43 ~~d~iDLtdNd-l~~l-----~~lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pL---- 109 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL-----DNLPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPL---- 109 (233)
T ss_pred ccceecccccc-hhhc-----ccCCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhcchh----
Confidence 45556666554 2221 11134666777777665 45554332 2445667777777766 45544332211
Q ss_pred CCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 132 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
..||+|++|.+-+++--..--....-+..+|+|++|+..+
T Consensus 110 ----a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ----ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 4456777777766542211111111145566777776654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.64 E-value=0.012 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=16.3
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecC
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC 89 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 89 (430)
+|++|+++++. ++++.... ..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l----~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPEL----SNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHG----TTCTTSSEEEETSS
T ss_pred cceEEEccCCC-CcccCchH----hCCCCCCEEEecCC
Confidence 45666666554 44432212 45666666666655
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.18 E-value=0.0039 Score=61.64 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=72.2
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
...+.+|+.+.+ .++.+.++...+..+++|++|+++++. +.+++.. ..++.|+.|+++++ .+.
T Consensus 91 l~~~~~l~~l~l----------~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l-----~~l~~L~~L~l~~N-~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDL----------YDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL-----STLTLLKELNLSGN-LIS 153 (414)
T ss_pred cccccceeeeec----------cccchhhcccchhhhhcchheeccccc-cccccch-----hhccchhhheeccC-cch
Confidence 344666777776 667788886657889999999999776 7764432 46777999999986 344
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcC-CCcccccccceeecccc
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE-HIGPLFPKLFELTLMDL 149 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 149 (430)
.+.. +..+.+|+.+++++|. +..+ +. . ...+.+++.+.+.++
T Consensus 154 ~~~~---~~~l~~L~~l~l~~n~-i~~i---------e~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 154 DISG---LESLKSLKLLDLSYNR-IVDI---------ENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hccC---CccchhhhcccCCcch-hhhh---------hhhh-hhhccchHHHhccCC
Confidence 4222 4458889999999883 4333 11 1 156778888888774
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.13 E-value=0.049 Score=47.03 Aligned_cols=84 Identities=17% Similarity=0.365 Sum_probs=55.3
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
..+...+++.++. +..+ +. +.++++|..|.+.+| .+..+ ...+...+|+|..|.+.++ ++..+..
T Consensus 41 ~d~~d~iDLtdNd-l~~l-~~--lp~l~rL~tLll~nN-rIt~I---------~p~L~~~~p~l~~L~LtnN-si~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKL-DN--LPHLPRLHTLLLNNN-RITRI---------DPDLDTFLPNLKTLILTNN-SIQELGD 105 (233)
T ss_pred ccccceecccccc-hhhc-cc--CCCccccceEEecCC-cceee---------ccchhhhccccceEEecCc-chhhhhh
Confidence 4566778888763 3332 22 567889999999877 67776 4555577888999999874 3443321
Q ss_pred CcccccCCCCccEEEEecCC
Q 014100 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~ 177 (430)
- ..+..+|+|+.|.+-+++
T Consensus 106 l-~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 L-DPLASCPKLEYLTLLGNP 124 (233)
T ss_pred c-chhccCCccceeeecCCc
Confidence 1 115677788888777665
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.003 Score=54.28 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=18.0
Q ss_pred ccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 138 FPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 138 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.++|+.|++++|+.+++. +...+..+++|+.|.+.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG--GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechh--HHHHHHHhhhhHHHHhcCch
Confidence 345555555555555443 22224445555555554433
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.49 E-value=0.001 Score=67.30 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=54.4
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
|.+..+-.++.=++.|+.|+|+++. ++++- . ...+++|+.||++++ .+..++-.+ ..+|. |+.|++++| .
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk-~~~v~-~----Lr~l~~LkhLDlsyN-~L~~vp~l~-~~gc~-L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNK-FTKVD-N----LRRLPKLKHLDLSYN-CLRHVPQLS-MVGCK-LQLLNLRNN-A 243 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhh-hhhhH-H----HHhcccccccccccc-hhccccccc-hhhhh-heeeeeccc-H
Confidence 5666666666677888888888776 54422 1 256888888888875 455544433 22344 777887776 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccc
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
++.+. ++ .++.+|+.|+++.
T Consensus 244 l~tL~----------gi-e~LksL~~LDlsy 263 (1096)
T KOG1859|consen 244 LTTLR----------GI-ENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhh----------hH-HhhhhhhccchhH
Confidence 44442 11 4555555555554
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.97 E-value=0.027 Score=50.49 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=8.0
Q ss_pred HhhcCCCCEEEEecC
Q 014100 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c 115 (430)
+..+|+|++|++++|
T Consensus 87 ~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGN 101 (260)
T ss_pred hhhCCceeEEeecCC
Confidence 334455555555555
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.0081 Score=51.65 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=8.4
Q ss_pred ecccceeecccCCCCcee
Q 014100 332 FEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~ 349 (430)
.++|+.|++++|+.+++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG 167 (221)
T ss_pred ccchheeeccCCCeechh
Confidence 344444444444444443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.0022 Score=57.73 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
+.+.+.|++.+|. +.+|..+ ..++.|+.|.|+-+ ++.++.| +..|.+|++|.+..| .+.++ +.+..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic-----~kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN-~I~sl---dEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISIC-----EKMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKN-CIESL---DELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHH-----HhcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhc-ccccH---HHHHH
Confidence 4566777777776 6654333 36778888877764 4555444 556777888877766 33332 11111
Q ss_pred CcCCCcccccccceeeccccccccccccCcc--cccCCCCccEEEE
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTE--NIIEMPELRYLAI 173 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~l~~L~~L~l 173 (430)
..++|+|+.|-|..++-...-..... -+..+|+|++|+=
T Consensus 84 -----LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 -----LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred -----HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 25667777777766543322111000 0234677776653
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.63 E-value=0.052 Score=50.63 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=72.1
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCC---CCCCCCCCccEEEeecCcCC
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQA---LPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~L~~L~l~~c~~l 92 (430)
+-|.||++.+.++-+ .+..-..+-..+...+.|+.+.+..+. +. +.+.. .....+++|+.|++.++. +
T Consensus 155 ~~~~Lrv~i~~rNrl-----en~ga~~~A~~~~~~~~leevr~~qN~-I~--~eG~~al~eal~~~~~LevLdl~DNt-f 225 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRL-----ENGGATALAEAFQSHPTLEEVRLSQNG-IR--PEGVTALAEALEHCPHLEVLDLRDNT-F 225 (382)
T ss_pred CCcceEEEEeecccc-----ccccHHHHHHHHHhccccceEEEeccc-cc--CchhHHHHHHHHhCCcceeeecccch-h
Confidence 446778777733211 111122233334455778888777554 33 11110 111467888888888752 3
Q ss_pred CcCCchh---HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc-cCcccccCCCCc
Q 014100 93 LSAIPAN---LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NFTENIIEMPEL 168 (430)
Q Consensus 93 ~~~~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~l~~L 168 (430)
+...... .+..+++|++|++++| .+..- |....-..+....|+|+.|.+.++.--.+-. .....+...|.|
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dc-ll~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDC-LLENE----GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred hhHHHHHHHHHhcccchheeeccccc-ccccc----cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 3222211 2456677888888887 44333 1111111112346788888887753211100 000002335666
Q ss_pred cEEEEecCC
Q 014100 169 RYLAIENCP 177 (430)
Q Consensus 169 ~~L~l~~c~ 177 (430)
++|.+.+|.
T Consensus 301 ~kLnLngN~ 309 (382)
T KOG1909|consen 301 EKLNLNGNR 309 (382)
T ss_pred HHhcCCccc
Confidence 666666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.016 Score=52.34 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+.++|++.+| .+.+ .++..+++.|++|.++=| ++..+- . +..|.+|++|+|..+ .+.++-
T Consensus 17 dl~~vkKLNcwg~-~L~D---Isic~kMp~lEVLsLSvN-kIssL~----------p-l~rCtrLkElYLRkN-~I~sld 79 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDD---ISICEKMPLLEVLSLSVN-KISSLA----------P-LQRCTRLKELYLRKN-CIESLD 79 (388)
T ss_pred HHHHhhhhcccCC-CccH---HHHHHhcccceeEEeecc-ccccch----------h-HHHHHHHHHHHHHhc-ccccHH
Confidence 3667889999888 4554 355789999999999977 555541 1 378899999999863 333332
Q ss_pred cCcccccCCCCccEEEEecCCCccc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMET 181 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~ 181 (430)
.-.. +.++|+|+.|-+..++....
T Consensus 80 EL~Y-LknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 80 ELEY-LKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHH-HhcCchhhhHhhccCCcccc
Confidence 2111 66788999988877765443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.94 E-value=1.1 Score=35.80 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=4.9
Q ss_pred HhhcCCCCEEEEe
Q 014100 101 IRCLNNLRWLEVR 113 (430)
Q Consensus 101 ~~~l~~L~~L~l~ 113 (430)
+.++.+|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3444444444443
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.86 E-value=0.03 Score=45.30 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=45.8
Q ss_pred ccEEEeecCcCCCcCC-chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 81 LRHLVVDDCTNMLSAI-PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+..++++.|+ +..+. ..+.+.+...|...++++| .++++ |..+...+|.++.|++++ +.+.++|..
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~f---------p~kft~kf~t~t~lNl~~-neisdvPeE- 95 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKF---------PKKFTIKFPTATTLNLAN-NEISDVPEE- 95 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhC---------CHHHhhccchhhhhhcch-hhhhhchHH-
Confidence 3455666663 22222 1122334455666666666 45554 455556666777777765 356666554
Q ss_pred ccccCCCCccEEEEecCC
Q 014100 160 ENIIEMPELRYLAIENCP 177 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~ 177 (430)
...++.|+.|++..++
T Consensus 96 --~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 96 --LAAMPALRSLNLRFNP 111 (177)
T ss_pred --HhhhHHhhhcccccCc
Confidence 6667777777776655
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.75 E-value=0.26 Score=24.32 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=6.9
Q ss_pred CccEEEeccCCCCcccc
Q 014100 360 SLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~l~ 376 (430)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 55666666654 44443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.66 E-value=0.2 Score=45.06 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=18.8
Q ss_pred hhcccccEEeeccCcc--cccccCCcccCCCCCEEEEccCC
Q 014100 248 KAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~l~~c~ 286 (430)
..+++|+++.+++... +.++ ..+..+.+|..|++..|+
T Consensus 88 e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCC
Confidence 4446666666665321 1222 223455556666666554
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.90 E-value=0.084 Score=47.71 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccce-----eeccCCCCCCCCCCCccEEEeecCcCCCcCC----chh------HHh
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQ-----EIWHGQALPVSFFNNLRHLVVDDCTNMLSAI----PAN------LIR 102 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~------~~~ 102 (430)
.+.+.+.+++..+..+..++++++. +. .++... .+-.+|+...+++- .++.. +.. .+-
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNt-igtEA~e~l~~~i----a~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLl 89 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNT-IGTEAMEELCNVI----ANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALL 89 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCc-ccHHHHHHHHHHH----hhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHh
Confidence 4566677777778888888888876 32 111111 23445555555542 11111 111 245
Q ss_pred hcCCCCEEEEecCC
Q 014100 103 CLNNLRWLEVRNCD 116 (430)
Q Consensus 103 ~l~~L~~L~l~~c~ 116 (430)
+||+|+..++|+|.
T Consensus 90 kcp~l~~v~LSDNA 103 (388)
T COG5238 90 KCPRLQKVDLSDNA 103 (388)
T ss_pred cCCcceeeeccccc
Confidence 78888888888773
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.75 E-value=0.32 Score=25.79 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.4
Q ss_pred CccEEEeccCCCCccccCCC
Q 014100 360 SLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~l~~~~ 379 (430)
+|++|++++| .++.+|.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3566666666 555666553
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.07 E-value=0.46 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=12.2
Q ss_pred CCCccEEEeccCCCCcc
Q 014100 358 FPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 358 ~~~L~~L~l~~c~~l~~ 374 (430)
+++|++|++.+|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777777764
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.52 E-value=10 Score=30.05 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=4.5
Q ss_pred HhhcCCCCEEEEe
Q 014100 101 IRCLNNLRWLEVR 113 (430)
Q Consensus 101 ~~~l~~L~~L~l~ 113 (430)
+.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344445544443
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.79 E-value=0.41 Score=43.41 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=75.1
Q ss_pred ccCCCCccEEEEecCCCccccc---------CCcceEEEecCCCCCcccC---CCcceeccCccccCCcCCCCCCCcEEe
Q 014100 162 IIEMPELRYLAIENCPDMETFI---------SNSVVHVTTDNKEPEKLTS---EENFFLTDQIQPLFDEKVAFPQLRYLE 229 (430)
Q Consensus 162 ~~~l~~L~~L~l~~c~~l~~~~---------~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~L~~L~ 229 (430)
+..||+|++.+++++..-..+| .+.|.+|.+++|++..+-- .+.+..+. ..+-...-|.|+...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la----~nKKaa~kp~Le~vi 163 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA----YNKKAADKPKLEVVI 163 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH----HHhhhccCCCceEEE
Confidence 4578999999998887655555 3578999999988543220 00000000 000122346777766
Q ss_pred cccCCCceeecccCchhh-hhcccccEEeeccCccccc-----ccCCcccCCCCCEEEEccCCCccccccc---cccccc
Q 014100 230 LSRLHKVQHLWKENDESN-KAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLINVLTL---STSESL 300 (430)
Q Consensus 230 L~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l 300 (430)
... +.+...+..-.... ..-..|+.+.+.+...-.. +...+..+.+|+.|++.... ++...+. ......
T Consensus 164 cgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W 241 (388)
T COG5238 164 CGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW 241 (388)
T ss_pred ecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc
Confidence 654 34444322111110 2224677777766432111 11233456788888887643 2211110 012334
Q ss_pred cCccEEEEccccc
Q 014100 301 VNLGRMKIADCKM 313 (430)
Q Consensus 301 ~~L~~L~l~~c~~ 313 (430)
+.|++|.+.+|-.
T Consensus 242 ~~lrEL~lnDCll 254 (388)
T COG5238 242 NLLRELRLNDCLL 254 (388)
T ss_pred chhhhccccchhh
Confidence 6678888888743
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=77.79 E-value=0.2 Score=40.69 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=55.6
Q ss_pred cceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcC
Q 014100 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 132 (430)
Q Consensus 53 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 132 (430)
+..++++.|. +-.+.... -.......|...+++++ .+.. +|..+..+++.++.|++.+| .+.++ |.
T Consensus 29 ~h~ldLssc~-lm~i~dav-y~l~~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~n-eisdv---------Pe 94 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAV-YMLSKGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLANN-EISDV---------PE 94 (177)
T ss_pred hhhcccccch-hhHHHHHH-HHHhCCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcchh-hhhhc---------hH
Confidence 4556666664 22222111 01134556777888885 3444 45566777889999999987 66666 66
Q ss_pred CCcccccccceeecccccccccc
Q 014100 133 HIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 133 ~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.+ ..++.|+.|+++.++ +...
T Consensus 95 E~-Aam~aLr~lNl~~N~-l~~~ 115 (177)
T KOG4579|consen 95 EL-AAMPALRSLNLRFNP-LNAE 115 (177)
T ss_pred HH-hhhHHhhhcccccCc-cccc
Confidence 74 888999999998864 4333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.25 E-value=5.5 Score=21.73 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=5.3
Q ss_pred CCCCEEEEecC
Q 014100 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~c 115 (430)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34455555444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.25 E-value=5.5 Score=21.73 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=5.3
Q ss_pred CCCCEEEEecC
Q 014100 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~c 115 (430)
++|++|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34455555444
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.70 E-value=7.9 Score=20.65 Aligned_cols=11 Identities=36% Similarity=0.429 Sum_probs=5.9
Q ss_pred CCCCEEEEecC
Q 014100 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~c 115 (430)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 56667777666
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.22 E-value=14 Score=37.21 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=36.7
Q ss_pred CCCCCccEEEeecCcCCCcCC-chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAI-PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 154 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 154 (430)
.+++.+..++++++ .+..+- -.++.+..|+|+.|+|++|........ ++. -.+...|++|-+.|++-.+.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~--el~------K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES--ELD------KLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchh--hhh------hhcCCCHHHeeecCCccccc
Confidence 35666777777665 344332 222455667777777777632211100 000 12334567777777665555
Q ss_pred c
Q 014100 155 F 155 (430)
Q Consensus 155 ~ 155 (430)
+
T Consensus 286 f 286 (585)
T KOG3763|consen 286 F 286 (585)
T ss_pred h
Confidence 4
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.06 E-value=36 Score=18.90 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.1
Q ss_pred CCCCEEEEecCCCccEe
Q 014100 105 NNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 105 ~~L~~L~l~~c~~l~~~ 121 (430)
.+|++|++++| .++.+
T Consensus 2 ~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN-KIKKI 17 (26)
T ss_pred CccCEEECCCC-cccee
Confidence 56777777776 44443
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.39 E-value=44 Score=18.66 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=8.0
Q ss_pred CCCCEEEEecC
Q 014100 105 NNLRWLEVRNC 115 (430)
Q Consensus 105 ~~L~~L~l~~c 115 (430)
++|++|++++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 46777888776
No 82
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=23.53 E-value=43 Score=17.33 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=12.1
Q ss_pred CcceeeccccccceeeccCC
Q 014100 52 DIKYLQLGHFPRLQEIWHGQ 71 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~ 71 (430)
+|..|++.+. +++.+|.|.
T Consensus 1 ~LVeL~m~~S-~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYS-KLEKLWEGV 19 (20)
T ss_pred CcEEEECCCC-ChHHhcCcc
Confidence 3566777744 477777664
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=23.49 E-value=56 Score=18.18 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=8.7
Q ss_pred CcceEEEecCCCCCcc
Q 014100 185 NSVVHVTTDNKEPEKL 200 (430)
Q Consensus 185 ~~L~~L~l~~~~~~~~ 200 (430)
++|+.|++++|.+...
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 3555666666655443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.29 E-value=72 Score=32.40 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=17.4
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecC
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC 89 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 89 (430)
+++.+..++|+++. +..+..-. ......|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~s-slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALS-SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccch-hhchhhhh-HHHHhcchhheeecccc
Confidence 45555555555443 32211100 01134566666666654
Done!