Query 014100
Match_columns 430
No_of_seqs 171 out of 2252
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 3.6E-22 1.2E-26 191.2 21.4 299 16-394 42-344 (347)
2 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 9.8E-26 188.0 23.4 305 15-394 42-350 (390)
3 4eco_A Uncharacterized protein 99.9 6.5E-22 2.2E-26 204.6 17.6 347 8-395 196-599 (636)
4 3t6q_A CD180 antigen; protein- 99.9 5.7E-20 2E-24 189.1 31.7 242 135-394 274-534 (606)
5 3rgz_A Protein brassinosteroid 99.9 1.5E-21 5.3E-26 206.2 20.2 61 332-394 655-715 (768)
6 3t6q_A CD180 antigen; protein- 99.9 1.2E-20 4.1E-25 194.2 26.0 72 38-115 43-115 (606)
7 4ecn_A Leucine-rich repeat pro 99.9 3.2E-21 1.1E-25 203.8 21.6 344 10-395 440-839 (876)
8 1o6v_A Internalin A; bacterial 99.9 1.4E-20 4.8E-25 187.6 25.1 313 14-394 64-386 (466)
9 3rgz_A Protein brassinosteroid 99.9 1.2E-21 4E-26 207.1 17.7 336 9-394 284-691 (768)
10 4eco_A Uncharacterized protein 99.9 4.2E-21 1.4E-25 198.5 21.2 324 10-372 239-600 (636)
11 2id5_A Lingo-1, leucine rich r 99.9 1.2E-20 4.2E-25 188.5 23.2 305 38-395 21-332 (477)
12 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-20 5.9E-25 193.0 24.9 159 220-395 396-557 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-20 1.3E-24 190.5 25.6 63 331-395 471-533 (606)
14 3oja_B Anopheles plasmodium-re 99.9 2.2E-20 7.6E-25 191.8 23.8 300 16-370 49-356 (597)
15 2z7x_B TOLL-like receptor 1, v 99.9 6.8E-20 2.3E-24 185.1 26.3 156 220-395 321-480 (520)
16 3v47_A TOLL-like receptor 5B a 99.9 6.8E-20 2.3E-24 181.9 25.2 332 18-395 30-407 (455)
17 4fmz_A Internalin; leucine ric 99.9 3E-20 1E-24 177.8 20.5 279 48-395 41-323 (347)
18 2z81_A CD282 antigen, TOLL-lik 99.9 6.9E-20 2.4E-24 186.2 24.1 159 222-394 333-508 (549)
19 3o6n_A APL1; leucine-rich repe 99.9 3.9E-20 1.3E-24 180.0 21.1 291 8-371 58-351 (390)
20 3bz5_A Internalin-J, INLJ; leu 99.8 5.6E-20 1.9E-24 182.4 21.5 295 14-395 38-351 (457)
21 4ecn_A Leucine-rich repeat pro 99.8 5.5E-20 1.9E-24 194.5 20.5 321 39-395 436-818 (876)
22 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.5E-24 183.7 23.9 157 221-394 371-529 (570)
23 1o6v_A Internalin A; bacterial 99.8 1.7E-19 6E-24 179.6 22.9 311 17-395 45-365 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.5E-19 8.5E-24 182.8 24.2 153 220-394 350-508 (562)
25 3oja_B Anopheles plasmodium-re 99.8 1.2E-19 4.3E-24 186.2 21.2 278 15-344 72-356 (597)
26 2id5_A Lingo-1, leucine rich r 99.8 6.8E-19 2.3E-23 175.8 24.1 301 7-370 23-331 (477)
27 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-19 1.3E-23 180.8 20.1 343 7-395 17-485 (549)
28 3bz5_A Internalin-J, INLJ; leu 99.8 3.3E-19 1.1E-23 176.9 19.2 278 13-369 59-349 (457)
29 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-18 6.1E-23 180.4 25.1 334 18-394 25-441 (680)
30 1ziw_A TOLL-like receptor 3; i 99.8 8.9E-19 3E-23 182.7 22.5 347 13-394 44-465 (680)
31 3v47_A TOLL-like receptor 5B a 99.8 8.5E-19 2.9E-23 174.0 20.3 312 38-395 20-383 (455)
32 3j0a_A TOLL-like receptor 5; m 99.8 2.3E-18 8E-23 183.7 24.8 116 11-149 41-158 (844)
33 4fcg_A Uncharacterized protein 99.8 7E-19 2.4E-23 167.0 18.3 206 49-314 79-290 (328)
34 2z7x_B TOLL-like receptor 1, v 99.8 1E-18 3.5E-23 176.5 19.4 136 248-396 321-457 (520)
35 2z63_A TOLL-like receptor 4, v 99.8 5.4E-18 1.9E-22 172.9 23.6 326 14-395 120-506 (570)
36 1xku_A Decorin; proteoglycan, 99.8 6.6E-18 2.3E-22 160.4 21.6 114 40-177 43-156 (330)
37 4fcg_A Uncharacterized protein 99.8 1.9E-18 6.5E-23 164.0 17.6 223 17-310 80-310 (328)
38 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-17 4.5E-22 177.9 24.7 331 17-395 23-438 (844)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-17 4.2E-22 170.2 23.4 135 248-396 350-486 (562)
40 2ft3_A Biglycan; proteoglycan, 99.8 6E-18 2.1E-22 160.8 18.5 151 224-393 173-330 (332)
41 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-17 5.6E-22 157.8 20.3 279 39-369 44-330 (332)
42 1xku_A Decorin; proteoglycan, 99.8 3.2E-17 1.1E-21 155.7 20.8 207 38-285 62-273 (330)
43 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-16 5.3E-21 163.9 26.0 134 251-395 445-579 (635)
44 3zyj_A Leucine-rich repeat-con 99.7 8E-17 2.7E-21 159.1 21.5 232 38-312 53-290 (440)
45 3zyi_A Leucine-rich repeat-con 99.7 6.9E-17 2.4E-21 160.2 20.7 232 38-312 64-301 (452)
46 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-16 5.8E-21 162.4 22.9 253 52-394 41-295 (622)
47 1jl5_A Outer protein YOPM; leu 99.7 1.2E-16 4.2E-21 158.2 21.1 175 51-285 111-287 (454)
48 1jl5_A Outer protein YOPM; leu 99.7 1.5E-16 5.1E-21 157.6 21.2 265 79-396 91-370 (454)
49 1ogq_A PGIP-2, polygalacturona 99.7 2.4E-17 8.4E-22 155.3 14.2 252 51-374 50-306 (313)
50 3zyj_A Leucine-rich repeat-con 99.7 1.7E-16 5.8E-21 156.8 20.1 221 18-286 64-290 (440)
51 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 8E-21 161.4 20.8 257 18-373 40-298 (622)
52 3zyi_A Leucine-rich repeat-con 99.7 2.3E-16 8E-21 156.4 20.0 221 18-286 75-301 (452)
53 1ogq_A PGIP-2, polygalacturona 99.7 7.2E-17 2.5E-21 152.1 14.4 248 79-394 50-302 (313)
54 2z80_A TOLL-like receptor 2, v 99.7 6.7E-16 2.3E-20 147.9 20.7 256 78-394 51-312 (353)
55 2z80_A TOLL-like receptor 2, v 99.7 9.1E-17 3.1E-21 154.0 13.3 257 37-344 40-312 (353)
56 2p1m_B Transport inhibitor res 99.7 1.5E-18 5.3E-23 177.9 0.5 253 14-282 62-345 (594)
57 3o53_A Protein LRIM1, AGAP0063 99.7 5.9E-17 2E-21 153.0 10.6 221 37-311 19-247 (317)
58 1ozn_A Reticulon 4 receptor; N 99.7 5.6E-16 1.9E-20 143.9 16.9 215 39-312 22-236 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.7 2.4E-17 8.1E-22 155.7 6.7 241 77-373 32-276 (317)
60 4g8a_A TOLL-like receptor 4; l 99.7 2E-15 6.7E-20 155.7 21.3 131 19-177 53-184 (635)
61 3ogk_B Coronatine-insensitive 99.7 1.2E-17 4.1E-22 171.2 3.8 355 14-394 69-474 (592)
62 2z66_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 143.1 16.4 119 38-177 17-137 (306)
63 2z66_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 145.8 13.2 236 7-312 19-259 (306)
64 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-18 5.6E-23 172.1 -4.3 244 14-285 24-294 (461)
65 4ay9_X Follicle-stimulating ho 99.7 3.1E-15 1E-19 143.2 18.1 230 38-310 19-255 (350)
66 2p1m_B Transport inhibitor res 99.6 1.6E-17 5.6E-22 170.3 -0.4 62 332-394 455-517 (594)
67 2xwt_C Thyrotropin receptor; s 99.6 6.3E-15 2.1E-19 133.1 16.5 210 40-313 23-238 (239)
68 1ozn_A Reticulon 4 receptor; N 99.6 9.2E-15 3.1E-19 135.7 17.7 213 7-287 23-237 (285)
69 3oja_A Leucine-rich immune mol 99.6 9.3E-16 3.2E-20 153.3 10.9 215 76-344 31-248 (487)
70 3oja_A Leucine-rich immune mol 99.6 6.1E-15 2.1E-19 147.4 16.6 241 21-314 3-250 (487)
71 3ogk_B Coronatine-insensitive 99.6 1E-16 3.5E-21 164.3 3.6 329 14-390 188-545 (592)
72 2xwt_C Thyrotropin receptor; s 99.6 1.2E-14 4.2E-19 131.2 16.8 178 80-310 32-214 (239)
73 4ay9_X Follicle-stimulating ho 99.6 2E-14 6.9E-19 137.5 17.4 226 78-368 29-255 (350)
74 1p9a_G Platelet glycoprotein I 99.5 1.6E-13 5.6E-18 127.5 17.5 106 47-177 6-111 (290)
75 2ast_B S-phase kinase-associat 99.5 1.6E-15 5.5E-20 144.1 2.5 234 51-351 70-310 (336)
76 2z62_A TOLL-like receptor 4, v 99.5 2.9E-13 9.9E-18 124.9 17.3 213 39-311 18-234 (276)
77 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.3E-18 128.9 14.9 82 219-312 147-228 (308)
78 2o6q_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 122.8 17.6 84 221-311 131-215 (270)
79 1h6u_A Internalin H; cell adhe 99.5 1.8E-13 6E-18 128.5 14.4 186 49-286 39-228 (308)
80 1z7x_W Ribonuclease inhibitor; 99.5 2.2E-16 7.5E-21 156.7 -5.8 343 17-395 2-382 (461)
81 1wwl_A Monocyte differentiatio 99.5 3.3E-15 1.1E-19 140.6 2.5 108 220-343 198-306 (312)
82 2o6q_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 123.6 15.9 189 39-286 27-216 (270)
83 2z62_A TOLL-like receptor 4, v 99.5 3.7E-13 1.3E-17 124.2 15.2 203 18-286 28-235 (276)
84 3rfs_A Internalin B, repeat mo 99.5 1.6E-13 5.5E-18 126.4 12.7 61 220-285 154-215 (272)
85 1wwl_A Monocyte differentiatio 99.5 7.3E-13 2.5E-17 124.5 15.0 199 77-312 93-307 (312)
86 2ast_B S-phase kinase-associat 99.4 5.6E-14 1.9E-18 133.4 6.5 245 51-343 22-282 (336)
87 1p9a_G Platelet glycoprotein I 99.4 3.2E-12 1.1E-16 118.8 17.8 194 76-312 7-206 (290)
88 2ca6_A RAN GTPase-activating p 99.4 3.1E-14 1.1E-18 138.0 3.2 269 26-344 7-314 (386)
89 3rfs_A Internalin B, repeat mo 99.4 7.6E-13 2.6E-17 121.9 12.2 196 48-292 38-239 (272)
90 3m19_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 116.3 12.1 61 221-286 129-190 (251)
91 4glp_A Monocyte differentiatio 99.4 7.4E-12 2.5E-16 117.5 14.4 211 49-311 89-304 (310)
92 3m19_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 111.9 15.2 83 222-311 106-189 (251)
93 2ca6_A RAN GTPase-activating p 99.3 1.5E-13 5.2E-18 133.2 0.5 257 7-312 21-314 (386)
94 4glp_A Monocyte differentiatio 99.3 2.2E-12 7.5E-17 121.1 6.8 229 79-344 64-305 (310)
95 1h6t_A Internalin B; cell adhe 99.3 2E-11 6.8E-16 113.5 12.6 168 77-312 44-211 (291)
96 1h6t_A Internalin B; cell adhe 99.3 4E-11 1.4E-15 111.4 13.7 170 101-344 42-211 (291)
97 4ezg_A Putative uncharacterize 99.2 4.2E-11 1.4E-15 104.5 11.8 82 221-311 110-191 (197)
98 3goz_A Leucine-rich repeat-con 99.2 1.3E-12 4.6E-17 125.4 2.4 67 47-116 18-91 (362)
99 4ezg_A Putative uncharacterize 99.2 3.6E-11 1.2E-15 104.9 10.7 150 49-261 42-191 (197)
100 1m9s_A Internalin B; cell inva 99.2 4.1E-11 1.4E-15 122.4 11.7 123 49-199 41-167 (605)
101 1m9s_A Internalin B; cell inva 99.2 7.3E-11 2.5E-15 120.5 12.4 165 76-286 40-208 (605)
102 3cvr_A Invasion plasmid antige 99.2 1.8E-10 6.2E-15 116.5 15.0 114 51-199 59-174 (571)
103 3goz_A Leucine-rich repeat-con 99.1 5.8E-12 2E-16 120.9 1.1 239 79-344 22-295 (362)
104 2o6s_A Variable lymphocyte rec 99.1 5.5E-10 1.9E-14 98.2 12.0 83 51-149 28-110 (208)
105 1xeu_A Internalin C; cellular 99.1 1.6E-10 5.6E-15 105.6 8.3 166 49-285 17-182 (263)
106 1xeu_A Internalin C; cellular 99.1 1.6E-10 5.5E-15 105.6 8.1 154 38-261 29-182 (263)
107 2v70_A SLIT-2, SLIT homolog 2 99.1 1.2E-09 4.2E-14 96.9 13.0 61 221-286 103-164 (220)
108 3cvr_A Invasion plasmid antige 99.1 7E-10 2.4E-14 112.2 12.7 186 19-269 60-248 (571)
109 2xot_A Amphoterin-induced prot 99.0 1.7E-09 5.9E-14 103.5 12.0 169 38-261 28-199 (361)
110 2v9t_B SLIT homolog 2 protein 99.0 1.7E-09 5.8E-14 96.0 11.0 119 38-177 21-139 (220)
111 3e6j_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 96.8 10.9 118 38-177 29-146 (229)
112 2o6s_A Variable lymphocyte rec 99.0 4.2E-09 1.4E-13 92.4 12.8 60 221-285 98-158 (208)
113 3e6j_A Variable lymphocyte rec 99.0 4.4E-09 1.5E-13 93.9 12.7 60 221-286 110-170 (229)
114 2v9t_B SLIT homolog 2 protein 99.0 9.5E-09 3.3E-13 91.1 13.9 60 221-285 102-162 (220)
115 1dce_A Protein (RAB geranylger 98.9 5E-11 1.7E-15 120.9 -1.6 200 15-281 346-566 (567)
116 3sb4_A Hypothetical leucine ri 98.9 1.1E-08 3.9E-13 96.5 14.5 86 222-317 225-312 (329)
117 1dce_A Protein (RAB geranylger 98.9 2.7E-11 9.1E-16 122.9 -4.3 85 219-311 459-543 (567)
118 2ell_A Acidic leucine-rich nuc 98.9 1.6E-09 5.4E-14 91.7 7.2 118 42-177 40-158 (168)
119 2xot_A Amphoterin-induced prot 98.9 1.1E-08 3.7E-13 97.9 13.5 83 221-310 110-198 (361)
120 2v70_A SLIT-2, SLIT homolog 2 98.9 2.5E-08 8.7E-13 88.3 14.0 38 220-261 126-163 (220)
121 2je0_A Acidic leucine-rich nuc 98.9 2.6E-09 8.9E-14 88.5 6.0 130 17-174 16-148 (149)
122 1w8a_A SLIT protein; signaling 98.8 1.9E-08 6.6E-13 87.1 9.0 120 38-177 18-137 (192)
123 3sb4_A Hypothetical leucine ri 98.8 6.3E-08 2.1E-12 91.3 13.0 101 274-389 225-327 (329)
124 2ell_A Acidic leucine-rich nuc 98.8 1.4E-08 4.7E-13 85.9 7.5 12 358-369 146-157 (168)
125 2wfh_A SLIT homolog 2 protein 98.7 3E-08 1E-12 86.0 8.4 118 38-177 20-137 (193)
126 4b8c_D Glucose-repressible alc 98.7 1.7E-08 5.7E-13 105.5 7.3 118 38-178 211-328 (727)
127 2je0_A Acidic leucine-rich nuc 98.7 2.1E-08 7.2E-13 82.9 6.4 85 220-311 39-123 (149)
128 1a9n_A U2A', U2A'; complex (nu 98.7 5.4E-08 1.8E-12 82.9 9.0 88 219-312 60-151 (176)
129 1a9n_A U2A', U2A'; complex (nu 98.7 1.8E-08 6.1E-13 85.9 5.7 107 52-177 43-151 (176)
130 2wfh_A SLIT homolog 2 protein 98.7 5.6E-08 1.9E-12 84.2 8.6 116 7-150 22-137 (193)
131 2o6r_A Variable lymphocyte rec 98.6 9.2E-08 3.1E-12 81.5 9.0 119 38-177 17-135 (177)
132 1w8a_A SLIT protein; signaling 98.6 1.7E-07 5.9E-12 81.0 10.5 103 54-177 11-113 (192)
133 4fdw_A Leucine rich hypothetic 98.6 6.6E-06 2.3E-10 79.6 21.8 224 38-311 122-355 (401)
134 1ds9_A Outer arm dynein; leuci 98.6 1.9E-09 6.4E-14 94.0 -3.1 151 1-177 1-151 (198)
135 4fdw_A Leucine rich hypothetic 98.6 3.8E-06 1.3E-10 81.3 19.5 256 49-367 111-378 (401)
136 4b8c_D Glucose-repressible alc 98.6 7.8E-08 2.7E-12 100.5 7.5 157 15-201 170-332 (727)
137 2o6r_A Variable lymphocyte rec 98.5 1.1E-06 3.8E-11 74.6 11.9 86 220-312 49-135 (177)
138 3e4g_A ATP synthase subunit S, 98.4 1E-07 3.5E-12 80.4 3.2 65 51-120 61-129 (176)
139 3g39_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 74.3 8.6 35 79-115 30-64 (170)
140 1ds9_A Outer arm dynein; leuci 98.3 4.5E-09 1.5E-13 91.6 -7.5 140 4-172 34-180 (198)
141 2r9u_A Variable lymphocyte rec 98.3 1.5E-06 5.2E-11 73.7 8.6 37 77-115 55-91 (174)
142 3g39_A Variable lymphocyte rec 98.3 8.4E-07 2.9E-11 75.0 6.7 97 36-150 17-113 (170)
143 2r9u_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 74.4 7.0 102 54-177 15-116 (174)
144 3e4g_A ATP synthase subunit S, 98.3 5.5E-07 1.9E-11 75.9 4.7 39 334-373 115-153 (176)
145 4fs7_A Uncharacterized protein 98.2 0.00013 4.5E-09 70.2 20.5 284 49-390 69-373 (394)
146 2ifg_A High affinity nerve gro 98.1 5.2E-06 1.8E-10 78.6 7.6 95 39-150 20-114 (347)
147 2ra8_A Uncharacterized protein 98.0 3.8E-06 1.3E-10 79.9 4.8 194 19-239 108-322 (362)
148 2ra8_A Uncharacterized protein 97.9 9.8E-06 3.4E-10 77.1 6.5 174 76-290 136-321 (362)
149 2ifg_A High affinity nerve gro 97.9 2.4E-05 8.1E-10 74.0 8.3 103 55-177 12-114 (347)
150 4fs7_A Uncharacterized protein 97.9 0.00081 2.8E-08 64.6 18.7 59 76-148 68-126 (394)
151 3un9_A NLR family member X1; l 97.8 3.8E-07 1.3E-11 87.4 -5.7 42 220-262 208-250 (372)
152 3un9_A NLR family member X1; l 97.8 2.4E-06 8.1E-11 81.9 -1.4 70 220-291 180-254 (372)
153 4gt6_A Cell surface protein; l 97.6 0.011 3.7E-07 56.7 22.4 67 235-309 252-319 (394)
154 4gt6_A Cell surface protein; l 97.6 0.018 6.1E-07 55.1 22.9 104 273-393 263-367 (394)
155 4h09_A Hypothetical leucine ri 96.9 0.32 1.1E-05 45.9 25.9 125 222-367 216-341 (379)
156 1io0_A Tropomodulin; LRR prote 96.3 0.0011 3.6E-08 56.5 1.4 123 43-177 28-162 (185)
157 4h09_A Hypothetical leucine ri 96.1 0.24 8.1E-06 46.8 16.8 128 136-292 214-348 (379)
158 3rw6_A Nuclear RNA export fact 95.8 0.0076 2.6E-07 54.3 4.8 38 77-115 168-206 (267)
159 3rw6_A Nuclear RNA export fact 95.6 0.0034 1.1E-07 56.6 1.6 66 48-117 167-232 (267)
160 1io0_A Tropomodulin; LRR prote 95.3 0.0036 1.2E-07 53.2 0.6 60 251-311 93-161 (185)
161 3rfe_A Platelet glycoprotein I 85.0 1.5 5.3E-05 34.2 5.6 35 223-261 31-65 (130)
162 3rfe_A Platelet glycoprotein I 78.5 2.4 8.2E-05 33.1 4.5 16 133-148 49-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 53.8 5.6 0.00019 33.6 2.0 39 222-261 69-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 49.4 4.4 0.00015 34.2 0.6 16 222-238 97-112 (197)
165 2lz0_A Uncharacterized protein 25.1 81 0.0028 22.9 4.1 16 132-147 13-28 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.6e-22 Score=191.24 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=213.5
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.+++|+++.+.+ +.+..++ .+..+++|++|+++++. +..+.. ...+++|++|++++| .+...
T Consensus 42 ~l~~L~~L~l~~----------~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n-~i~~~ 103 (347)
T 4fmz_A 42 ELESITKLVVAG----------EKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTN-KITDI 103 (347)
T ss_dssp HHTTCSEEECCS----------SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC
T ss_pred hcccccEEEEeC----------Cccccch-hhhhcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCC-cccCc
Confidence 477788888733 3334443 36678899999999875 554332 367899999999987 55553
Q ss_pred CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 96 IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
+. +.++++|++|++++| .+..+ +. +..+++|+.|+++++..+..++. +..+++|++|++.+
T Consensus 104 -~~--~~~l~~L~~L~l~~n-~i~~~---------~~--~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 104 -SA--LQNLTNLRELYLNED-NISDI---------SP--LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTE 164 (347)
T ss_dssp -GG--GTTCTTCSEEECTTS-CCCCC---------GG--GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCS
T ss_pred -hH--HcCCCcCCEEECcCC-cccCc---------hh--hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecC
Confidence 32 778999999999988 44444 22 36788999999998876665543 67888999999988
Q ss_pred CCCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcc
Q 014100 176 CPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 176 c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~ 251 (430)
|.. +..+ .++|++|++++|.+.+.. ....+++|+.|+++++ .++.... + ..++
T Consensus 165 ~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~----------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~~~ 221 (347)
T 4fmz_A 165 SKV-KDVTPIANLTDLYSLSLNYNQIEDIS----------------PLASLTSLHYFTAYVN-QITDITP--V---ANMT 221 (347)
T ss_dssp SCC-CCCGGGGGCTTCSEEECTTSCCCCCG----------------GGGGCTTCCEEECCSS-CCCCCGG--G---GGCT
T ss_pred CCc-CCchhhccCCCCCEEEccCCcccccc----------------cccCCCccceeecccC-CCCCCch--h---hcCC
Confidence 763 3332 568999999988876644 2456789999999885 5665433 3 7889
Q ss_pred cccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCccee
Q 014100 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|++++| .+..+++ +..+++|+.|++++| .+..++ ....+++|++|++++| .+.++. ....
T Consensus 222 ~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~---------~~~~ 285 (347)
T 4fmz_A 222 RLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS---------VLNN 285 (347)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG---------GGGG
T ss_pred cCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh---------hhcC
Confidence 9999999987 4555544 678899999999887 455554 3577899999999887 344332 2234
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|++.+|. ++..... ....+++|++|++++|+ ++.++. ...+++|++++++++.
T Consensus 286 l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 7899999999874 4443321 23358999999999986 444433 5678999999997765
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.9e-21 Score=188.04 Aligned_cols=305 Identities=16% Similarity=0.155 Sum_probs=217.0
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
..+++++.+.+ .++.++.+|.. +..+++|++|+++++. +..+.... ...+++|++|++++| .+.
T Consensus 42 ~~l~~l~~l~l----------~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~ 106 (390)
T 3o6n_A 42 ITLNNQKIVTF----------KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIR 106 (390)
T ss_dssp GGGCCCSEEEE----------ESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCC
T ss_pred cccCCceEEEe----------cCCchhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCC-CCC
Confidence 45678888887 44566777766 4678999999999876 66544322 267899999999988 566
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
..++.. +.++++|++|++++| .+..+ |..++..+++|++|+++++. +..++.. .+..+++|++|++
T Consensus 107 ~~~~~~-~~~l~~L~~L~L~~n-~l~~l---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~l 172 (390)
T 3o6n_A 107 YLPPHV-FQNVPLLTVLVLERN-DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQL 172 (390)
T ss_dssp CCCTTT-TTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTSSCTTCCEEEC
T ss_pred cCCHHH-hcCCCCCCEEECCCC-ccCcC---------CHHHhcCCCCCcEEECCCCc-cCccChh--hccCCCCCCEEEC
Confidence 655543 778999999999998 56555 56656788999999999864 4444322 1667899999999
Q ss_pred ecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhc
Q 014100 174 ENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAF 250 (430)
Q Consensus 174 ~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l 250 (430)
+++. ++.++ .++|+.|++++|.+.... ..++|+.|+++++ .++.++. ...
T Consensus 173 ~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~L~~L~l~~n-~l~~~~~------~~~ 225 (390)
T 3o6n_A 173 SSNR-LTHVDLSLIPSLFHANVSYNLLSTLA-------------------IPIAVEELDASHN-SINVVRG------PVN 225 (390)
T ss_dssp CSSC-CSBCCGGGCTTCSEEECCSSCCSEEE-------------------CCSSCSEEECCSS-CCCEEEC------CCC
T ss_pred CCCc-CCccccccccccceeecccccccccC-------------------CCCcceEEECCCC-eeeeccc------ccc
Confidence 9876 44444 568899999888765532 3468899999884 6666643 334
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcce
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV 330 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 330 (430)
++|+.|+++++. +... +.+..+++|+.|+++++. +..+... .+..+++|++|+++++. +..+. ....
T Consensus 226 ~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~--------~~~~ 292 (390)
T 3o6n_A 226 VELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVALN--------LYGQ 292 (390)
T ss_dssp SSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSSC-CCEEE--------CSSS
T ss_pred ccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCCc-CcccC--------cccC
Confidence 789999998874 4443 456788899999998874 4444322 35678899999998863 44332 1223
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|+.|+++++ .++.++.. ...+++|++|++++|. ++.++ ...+++|+.+++++++
T Consensus 293 ~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 4788999999887 56666652 3347899999998874 55555 4567899999997764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=6.5e-22 Score=204.60 Aligned_cols=347 Identities=11% Similarity=0.085 Sum_probs=216.5
Q ss_pred ccccCCcccccceeeeEeecccc-------cccCcc-chhhhhhhhccc--CCCCcceeeccccccceeeccCCCCCCCC
Q 014100 8 KTFSQGIVSTPKLHEVQVKGELR-------RWEGNL-NSTIQKCYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSF 77 (430)
Q Consensus 8 ~~~~~~~~~~~~L~~~~~~~~~~-------~~~~~~-~~~~~~l~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 77 (430)
..+|..+..+++|+++.+.+... .|.... ......+|..+. .+++|++|+++++.-...++... ..
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~ 271 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KA 271 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TT
T ss_pred ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hc
Confidence 34677788899999999965311 111100 111223888888 99999999999887444444333 67
Q ss_pred CCCccEEEeecCcCCCc-CCchhHHhhc------CCCCEEEEecCCCccEeeccccccCCcC--CCcccccccceeeccc
Q 014100 78 FNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVRNCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMD 148 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~ 148 (430)
+++|++|++++|..+.. ..|.. +..+ ++|++|++++| .+..+ |. .+ ..+++|+.|++++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~i---------p~~~~l-~~l~~L~~L~L~~ 339 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTF---------PVETSL-QKMKKLGMLECLY 339 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSC---------CCHHHH-TTCTTCCEEECCS
T ss_pred CCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCcc---------Cchhhh-ccCCCCCEEeCcC
Confidence 88999999998743554 33443 4444 88888888887 44444 33 22 5666777777766
Q ss_pred cccccccccCcccccCCCCccEEEEecCCCccccc-----CCc-ceEEEecCCCCCcccC------CCcceecc----Cc
Q 014100 149 LPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTS------EENFFLTD----QI 212 (430)
Q Consensus 149 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~------~~~l~~~~----~~ 212 (430)
+.....+| . +..+++|++|++++|. ++.+| .++ |++|++++|.+..++. +.++...+ ..
T Consensus 340 N~l~g~ip-~---~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 340 NQLEGKLP-A---FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CCCEEECC-C---CEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcCccchh-h---hCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC
Confidence 53222554 2 5556666666666654 33443 234 6666666666443331 01222211 00
Q ss_pred cc-cCCcCC-------CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc--------CCC
Q 014100 213 QP-LFDEKV-------AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH--------LEN 276 (430)
Q Consensus 213 ~~-~~~~~~-------~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------l~~ 276 (430)
.. ...... .+++|+.|+++++ .++.++...+ ..+++|+.|+++++. +..+|..... +++
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGG
T ss_pred CCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCCC-CCCcCHHHhccccccccccCC
Confidence 00 001122 4568999999884 6776654433 568899999999874 4477765432 228
Q ss_pred CCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------CCceec
Q 014100 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------SLTSFC 350 (430)
Q Consensus 277 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~ 350 (430)
|+.|+++++. +..++.......+++|++|+++++. +..+ +.....+++|+.|+++++. -...++
T Consensus 490 L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~i--------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 490 LTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKF--------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp CCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSC--------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCc--------ChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 9999998874 5566643111378999999998864 3333 2233448899999996543 233444
Q ss_pred CCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 351 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
. ....+++|++|++++|.. +.+|..+. ++|+.+++++++.
T Consensus 560 ~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 560 E--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp T--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred H--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 4 334589999999998755 88888764 7999999988764
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=5.7e-20 Score=189.14 Aligned_cols=242 Identities=17% Similarity=0.086 Sum_probs=117.1
Q ss_pred cccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCc-cc-----CC
Q 014100 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-LT-----SE 203 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~-~~-----~~ 203 (430)
+..+++|++|+++++ .++.+|.. +..+++|++|++++|......+ .++|++|++++|.+.. .. .+
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 345566666666654 34445443 4556666666666654222111 3456666666665331 11 11
Q ss_pred Ccceecc----Ccccc---CCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCC
Q 014100 204 ENFFLTD----QIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLE 275 (430)
Q Consensus 204 ~~l~~~~----~~~~~---~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~ 275 (430)
+++...+ ..... ....+.+++|+.|+++++ .+....+..+ ..+++|+.|+++++......++. +..++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 1222111 00000 112344555666666553 4444444444 55566666666655333322222 44556
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA 355 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 355 (430)
+|+.|++++|. +...+.. .+..+++|++|++++|......+ ........+++|+.|++++| .++.+... ..
T Consensus 426 ~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~ 496 (606)
T 3t6q_A 426 LLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFC-DLSSIDQH-AF 496 (606)
T ss_dssp TCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTS-CCCEECTT-TT
T ss_pred cCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCC-ccCccChh-hh
Confidence 66666666553 2222111 23456666666666653221111 00112233666777777765 44444321 22
Q ss_pred cCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 356 LEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 356 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
..+++|++|++++|......|..+..+++| +++++++.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 346677777777665444445555666677 77776654
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.5e-21 Score=206.17 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=32.9
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|+++++.--..++. ....+++|++|+++++.....+|..+..+++|++++++++.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 45555555555432223443 22235666666666655444566666666666666665543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.2e-20 Score=194.24 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=34.4
Q ss_pred hhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 38 STIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|++++| .+....|.. ++++++|++|++++|
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDT---FQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQT 115 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTS
T ss_pred CccCcCChhHhccCccceEEECCCCc-cceeChhh---ccCccccCeeeCCCC-cccccChhh-hcccccccEeecccc
Confidence 333444 2345556666666666554 33221111 144556666666555 333333322 445555666666555
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.2e-21 Score=203.84 Aligned_cols=344 Identities=14% Similarity=0.085 Sum_probs=219.7
Q ss_pred ccCCcccccceeeeEeecccccc-------cCcc-chhhhhhhhccc--CCCCcceeeccccccceeeccCCCCCCCCCC
Q 014100 10 FSQGIVSTPKLHEVQVKGELRRW-------EGNL-NSTIQKCYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSFFN 79 (430)
Q Consensus 10 ~~~~~~~~~~L~~~~~~~~~~~~-------~~~~-~~~~~~l~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 79 (430)
+|..+..+++|+++.+.+....- .... +..-..+|..+. .+++|++|++++|.-...++... ..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l----~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL----YDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG----GGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH----hCCC
Confidence 67778889999999996532110 0000 011123788877 89999999999886444444333 6788
Q ss_pred CccEEEeecCcCCCc-CCchhHHhhc-------CCCCEEEEecCCCccEeeccccccCCcC--CCcccccccceeecccc
Q 014100 80 NLRHLVVDDCTNMLS-AIPANLIRCL-------NNLRWLEVRNCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMDL 149 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~-~~~~~~~~~l-------~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 149 (430)
+|+.|++++|..+.. ..|.. +..+ ++|++|++++| .+..+ |. .+ ..+++|+.|+++++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~i---------p~~~~l-~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEF---------PASASL-QKMVKLGLLDCVHN 583 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBC---------CCHHHH-TTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCcc---------CChhhh-hcCCCCCEEECCCC
Confidence 889999988743554 23433 3344 48888888887 44444 44 33 67778888888775
Q ss_pred ccccccccCcccccCCCCccEEEEecCCCccccc-----CCc-ceEEEecCCCCCcccCC------Ccceecc----Cc-
Q 014100 150 PKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTSE------ENFFLTD----QI- 212 (430)
Q Consensus 150 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~~------~~l~~~~----~~- 212 (430)
. +..+| . +..+++|+.|++++|. ++.+| .++ |+.|++++|.+..++.. .++...+ ..
T Consensus 584 ~-l~~lp-~---~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 584 K-VRHLE-A---FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp C-CCBCC-C---CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred C-cccch-h---hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 3 44555 2 6677778888887765 33444 234 77777777775543320 1122211 01
Q ss_pred ---cccCCcCC--CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc--------CCCCCE
Q 014100 213 ---QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH--------LENLAT 279 (430)
Q Consensus 213 ---~~~~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------l~~L~~ 279 (430)
..+....+ ..++|+.|+++++ .++.++...+ ..+++|+.|+++++ .+..+|..... +++|+.
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CccccchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccChHHhccccccccccCCccE
Confidence 11111122 2358999999885 6666544333 57789999999987 55577765443 238999
Q ss_pred EEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------CCceecCCC
Q 014100 280 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------SLTSFCLGN 353 (430)
Q Consensus 280 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~~~~ 353 (430)
|++++| .+..+|.......+++|+.|+++++. +..+ +.....+++|+.|++++++ -...++.
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~l--------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-- 800 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSF--------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-- 800 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSC--------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCcc--------chhhhcCCCCCEEECCCCCCcccccccccChH--
Confidence 999987 46666643111378999999998864 3333 2233458899999998743 2334443
Q ss_pred cccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 354 YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|++|++++|.. +.+|..+. ++|+.+++++++.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 334589999999999855 88888864 6999999988763
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.4e-20 Score=187.56 Aligned_cols=313 Identities=12% Similarity=0.186 Sum_probs=177.7
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+..+++|+++.+ ..+.+..++. +..+++|++|+++++. +..+.. ...+++|++|++++| .+.
T Consensus 64 ~~~l~~L~~L~L----------s~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 64 VEYLNNLTQINF----------SNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp GGGCTTCCEEEC----------CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCC
T ss_pred hhhhcCCCEEEC----------CCCccCCchh-hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCC
Confidence 334555666655 2233444443 5667777777777664 433221 256777777777776 455
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
..++ +.++++|++|++++| .+..+.. +..+++|+.|++.+ .+...+. +..+++|++|++
T Consensus 126 ~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l~~--~~~~~~~----~~~l~~L~~L~l 184 (466)
T 1o6v_A 126 DIDP---LKNLTNLNRLELSSN-TISDISA-----------LSGLTSLQQLSFGN--QVTDLKP----LANLTTLERLDI 184 (466)
T ss_dssp CCGG---GTTCTTCSEEEEEEE-EECCCGG-----------GTTCTTCSEEEEEE--SCCCCGG----GTTCTTCCEEEC
T ss_pred CChH---HcCCCCCCEEECCCC-ccCCChh-----------hccCCcccEeecCC--cccCchh----hccCCCCCEEEC
Confidence 5433 566777777777776 2333211 13444455554432 1111111 344555666666
Q ss_pred ecCCCccccc----CCcceEEEecCCCCCcccC------CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccC
Q 014100 174 ENCPDMETFI----SNSVVHVTTDNKEPEKLTS------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 174 ~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
++|. ++.++ .++|++|++++|.+.+..+ ++.+.+.+....-......+++|+.|+++++ .++...+
T Consensus 185 ~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-- 260 (466)
T 1o6v_A 185 SSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-- 260 (466)
T ss_dssp CSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--
T ss_pred cCCc-CCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh--
Confidence 5554 22222 3455555555555433321 1111111100000123455678888888875 5555432
Q ss_pred chhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccccc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVG 323 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 323 (430)
+ ..+++|+.|++++| .+..+++ +..+++|+.|++++|. +..++. +..+++|+.|++++|. +.++.
T Consensus 261 ~---~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~----- 325 (466)
T 1o6v_A 261 L---SGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDIS----- 325 (466)
T ss_dssp G---TTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCG-----
T ss_pred h---hcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCch-----
Confidence 3 67788888888876 3444444 5677888888888764 444443 4678888888888874 33332
Q ss_pred ccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 324 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 324 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
....+++|+.|++.+| .++.++ ....+++|++|++++|......| ...+++|+.+++.++.
T Consensus 326 ----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 ----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 1234788888888887 455553 23458889999998886544444 5678889999887764
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.2e-21 Score=207.12 Aligned_cols=336 Identities=13% Similarity=0.005 Sum_probs=199.8
Q ss_pred cccCCccc-ccceeeeEeecccccccCccchhhh-hhhhcccCCCCcceeeccccccce-eeccCCCCCCCCCCCccEEE
Q 014100 9 TFSQGIVS-TPKLHEVQVKGELRRWEGNLNSTIQ-KCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 9 ~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~ 85 (430)
..|..+.. +++|+++.+.+ +.+. .+|..+..+++|++|+++++. +. .++... ...+++|++|+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~----------n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~---l~~l~~L~~L~ 349 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSG----------NHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDT---LLKMRGLKVLD 349 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCS----------SEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHH---HTTCTTCCEEE
T ss_pred ccCHHHHhhcCcCCEEECcC----------CcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHH---HhcCCCCCEEe
Confidence 34555555 48999999833 3333 456677888999999999886 43 433221 25788999999
Q ss_pred eecCcCCCcCCchhHHhhcC-CCCEEEEecCCCccEeeccccccCCcCCC-cccccccceeeccccccccccccCccccc
Q 014100 86 VDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHI-GPLFPKLFELTLMDLPKLKRFCNFTENII 163 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 163 (430)
+++| .+....|.. +..++ +|++|++++|.-...+ |..+ ...+++|++|++.+|.....+|.. +.
T Consensus 350 Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~ 415 (768)
T 3rgz_A 350 LSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPT---LS 415 (768)
T ss_dssp CCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEEC---------CTTTTCSTTCCCCEEECCSSEEEEECCGG---GG
T ss_pred CcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCc---------ChhhhhcccCCccEEECCCCccccccCHH---Hh
Confidence 9988 454334444 55566 8999999988432222 2222 112567788888776544344443 66
Q ss_pred CCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee
Q 014100 164 EMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 238 (430)
.+++|++|++++|......| .++|++|++++|.+.+..+ ...+.+++|+.|+++++ .++.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--------------~~~~~l~~L~~L~L~~N-~l~~ 480 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--------------QELMYVKTLETLILDFN-DLTG 480 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--------------GGGGGCTTCCEEECCSS-CCCS
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--------------HHHcCCCCceEEEecCC-cccC
Confidence 77777777777765332333 4567777777777554321 22345666777777664 4443
Q ss_pred ecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhh
Q 014100 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 318 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 318 (430)
..+..+ ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|. .+..+++|+.|++++|.....+.
T Consensus 481 ~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 481 EIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCC
Confidence 333434 5666677777776655556666666666777777766654334443 24556667777766654322211
Q ss_pred ccc--------------------------------------------------------------ccccCCcceeecccc
Q 014100 319 QLQ--------------------------------------------------------------VGEEAKGCVVFEELG 336 (430)
Q Consensus 319 ~~~--------------------------------------------------------------~~~~~~~~~~~~~L~ 336 (430)
..- .+..+.....+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 000 000011112246677
Q ss_pred eeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 337 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 337 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.|+++++.--..++. ....+++|++|+++++.....+|..+..+++|+.++++++.
T Consensus 636 ~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCSSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 777777643334544 22347778888887776555777777777788888876654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.2e-21 Score=198.49 Aligned_cols=324 Identities=13% Similarity=0.088 Sum_probs=217.7
Q ss_pred ccCCcc--cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccce--eeccCCC--CCCCCCCCccE
Q 014100 10 FSQGIV--STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQ--EIWHGQA--LPVSFFNNLRH 83 (430)
Q Consensus 10 ~~~~~~--~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~--~~~~~~~--~~~~~~~~L~~ 83 (430)
+|..+. .+++|+++.+.+. .-...+|..+..+++|++|+++++..++ .++.... .....+++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n---------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNC---------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECC---------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCC---------cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 777777 8999999999332 2234677888899999999999886344 2332220 00022489999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc-EeeccccccCCcCCCcccccccceeeccccccccccccCcccc
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENI 162 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 162 (430)
|++++| .+..++....++++++|++|++++|. +. .+ | . +..+++|+.|+++++ .+..+|.. +
T Consensus 310 L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i---------p-~-~~~l~~L~~L~L~~N-~l~~lp~~---l 372 (636)
T 4eco_A 310 IYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKL---------P-A-FGSEIKLASLNLAYN-QITEIPAN---F 372 (636)
T ss_dssp EECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEEC---------C-C-CEEEEEESEEECCSS-EEEECCTT---S
T ss_pred EECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccch---------h-h-hCCCCCCCEEECCCC-ccccccHh---h
Confidence 999998 56665542348889999999999984 44 55 4 3 377788888888875 35566554 6
Q ss_pred cCCCC-ccEEEEecCCCccccc-------CCcceEEEecCCCCCccc------------CCCcceecc----CccccCCc
Q 014100 163 IEMPE-LRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLT------------SEENFFLTD----QIQPLFDE 218 (430)
Q Consensus 163 ~~l~~-L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~------------~~~~l~~~~----~~~~~~~~ 218 (430)
..+++ |++|+++++. ++.+| .++|+.|++++|.+.+.. ...++...+ ....+...
T Consensus 373 ~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 373 CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp EEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred hhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 67777 8888888776 44555 126888888888765422 112333221 11222222
Q ss_pred -CCCCCCCcEEecccCCCceeecccCchhh----hhcccccEEeeccCcccccccCCcc--cCCCCCEEEEccCCCcccc
Q 014100 219 -KVAFPQLRYLELSRLHKVQHLWKENDESN----KAFANLIRLKISECSKLQKLVTPSW--HLENLATLEVSKCHGLINV 291 (430)
Q Consensus 219 -~~~~~~L~~L~L~~~~~l~~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~~ 291 (430)
...+++|+.|+++++ .++.++...+... ..+++|+.|+++++ .++.+|..+. .+++|+.|+++++. +..+
T Consensus 452 ~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKF 528 (636)
T ss_dssp HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSC
T ss_pred HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCc
Confidence 224789999999985 7777665544110 12339999999997 4558887776 89999999999875 5556
Q ss_pred ccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 014100 292 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 292 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 371 (430)
|. .+..+++|+.|+++++..+..--. .+..+.....+++|+.|+++++. ++.++... +++|++|++++|+.
T Consensus 529 p~--~~~~l~~L~~L~Ls~N~~ls~N~l--~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~----~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 529 PT--QPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQIGSND-IRKVNEKI----TPNISVLDIKDNPN 599 (636)
T ss_dssp CC--GGGGCSSCCEEECCSCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC----CTTCCEEECCSCTT
T ss_pred Ch--hhhcCCCCCEEECCCCcccccCcc--cccChHHHhcCCCCCEEECCCCc-CCccCHhH----hCcCCEEECcCCCC
Confidence 54 356899999999976542111000 02233344558999999999974 58887643 48999999999865
Q ss_pred C
Q 014100 372 M 372 (430)
Q Consensus 372 l 372 (430)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=188.50 Aligned_cols=305 Identities=16% Similarity=0.157 Sum_probs=215.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+..+|..+ .+++++|+++++. +..+.... ...+++|++|++++| .+....+.. +.++++|++|++++| .
T Consensus 21 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 21 KRFVAVPEGI--PTETRLLDLGKNR-IKTLNQDE---FASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp CCCSSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCcCcCCCCC--CCCCcEEECCCCc-cceECHhH---ccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-c
Confidence 4455666654 3578899998776 66543221 257888999999887 566654443 778889999999887 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ |...+..+++|++|+++++. +..+... .+..+++|++|++.++. ++.++ .++|++|+
T Consensus 92 l~~~---------~~~~~~~l~~L~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 92 LKLI---------PLGVFTGLSNLTKLDISENK-IVILLDY--MFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CCSC---------CTTSSTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEE
T ss_pred CCcc---------CcccccCCCCCCEEECCCCc-cccCChh--HccccccCCEEECCCCc-cceeChhhccCCCCCCEEE
Confidence 5555 55555788899999998764 4443221 15678889999998875 33332 46888999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+.++.. .....+++|+.|+++++ .+..+....+ ..+++|+.|++++|..+..+++..
T Consensus 159 l~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 159 LEKCNLTSIPT--------------EALSHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp EESCCCSSCCH--------------HHHTTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTT
T ss_pred CCCCcCcccCh--------------hHhcccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCccc
Confidence 98888765441 12456789999999984 6777766666 788999999999998888888777
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
....+|+.|++++|. ++.++.. .+..+++|++|+++++. +..+.. .....+++|+.|++.++ .++.+..
T Consensus 221 ~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~ 289 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEP 289 (477)
T ss_dssp TTTCCCSEEEEESSC-CCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECT
T ss_pred ccCccccEEECcCCc-ccccCHH-HhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECH
Confidence 777799999998874 6665532 35678999999998864 443321 12233788999999886 5666643
Q ss_pred CCcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEecccCCC
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~~~ 395 (430)
. ....+++|++|+++++ .++.++.. +..+++|+.+++.+++.
T Consensus 290 ~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 Y-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp T-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred H-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 2 2345889999999887 55566654 45778999999977653
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.7e-20 Score=193.01 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCCCCcEEecccCCCceeecc-cCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccc-ccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLSTS 297 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~ 297 (430)
..+++|+.|+++++ .+....+ ..+ ..+++|+.|++++|......|..+..+++|+.|++++|..... ++. .+
T Consensus 396 ~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~ 469 (606)
T 3vq2_A 396 MGLEELQHLDFQHS-TLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VF 469 (606)
T ss_dssp TTCTTCCEEECTTS-EEESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CC
T ss_pred cCCCCCCeeECCCC-ccCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hh
Confidence 33445555555543 3333222 222 4555666666665544444444455566666666665532221 221 24
Q ss_pred ccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC
Q 014100 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 377 (430)
..+++|++|++++|. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|++++|. ++.+|.
T Consensus 470 ~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQ-LEQIS-------WGVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEES
T ss_pred ccCCCCCEEECCCCc-CCccC-------hhhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCH
Confidence 556666666666653 22221 112233677888888876 44444221 23347888888888874 667887
Q ss_pred CCcCCC-CceEEecccCCC
Q 014100 378 GVVDAP-KLNKVKPTEEED 395 (430)
Q Consensus 378 ~~~~~~-~L~~l~l~~~~~ 395 (430)
.+..++ +|+++++.+++.
T Consensus 539 ~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CGGGSCTTCCEEECCSCCC
T ss_pred hHhhhcccCcEEEccCCCc
Confidence 776666 588888877654
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.7e-20 Score=190.54 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
.+++|+.|++++| .++.+... ....+++|++|++++|......|..+..+++|++++++++..
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred cCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 3677888888776 45555432 233478888888888755544566777788888888877653
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.2e-20 Score=191.83 Aligned_cols=300 Identities=16% Similarity=0.185 Sum_probs=166.8
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCc
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS 94 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 94 (430)
.+.+++.+.+ .++.+..+|.. +..+++|++|+++++. +..+.... ...+++|++|++++| .+..
T Consensus 49 ~l~~l~~l~l----------~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTF----------KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIRY 113 (597)
T ss_dssp GGCCCSEEEE----------SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCC
T ss_pred cCCCceEEEe----------eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCC-cCCC
Confidence 3456666666 33556666655 4568889999998876 66544321 257888999999887 4666
Q ss_pred CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEe
Q 014100 95 AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIE 174 (430)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 174 (430)
+++. .++++++|++|++++| .+..+ |..++..+++|++|+++++. +..++.. .+..+++|++|+++
T Consensus 114 ~~~~-~~~~l~~L~~L~L~~n-~l~~l---------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 114 LPPH-VFQNVPLLTVLVLERN-DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLS 179 (597)
T ss_dssp CCTT-TTTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTTTCTTCCEEECT
T ss_pred CCHH-HHcCCCCCCEEEeeCC-CCCCC---------CHHHhccCCCCCEEEeeCCc-CCCCChh--hhhcCCcCcEEECc
Confidence 5543 3678899999999888 55555 55555788888888888864 4444322 15678888888888
Q ss_pred cCCCccccc---CCcceEEEecCCCCCcccC---CCcceeccC-ccccCCcCCCCCCCcEEecccCCCceeecccCchhh
Q 014100 175 NCPDMETFI---SNSVVHVTTDNKEPEKLTS---EENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 175 ~c~~l~~~~---~~~L~~L~l~~~~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 247 (430)
+|. ++.++ .++|+.|++++|.+.++.. ++.+.+.+. ...+ . ....++|+.|+++++ .++.. ..+
T Consensus 180 ~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~-~~~~~~L~~L~L~~n-~l~~~--~~l--- 250 (597)
T 3oja_B 180 SNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-R-GPVNVELTILKLQHN-NLTDT--AWL--- 250 (597)
T ss_dssp TSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-E-CSCCSCCCEEECCSS-CCCCC--GGG---
T ss_pred CCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc-c-cccCCCCCEEECCCC-CCCCC--hhh---
Confidence 875 44444 5677788887776554321 111111000 0000 0 112245555555553 33332 112
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++......|..+..+++|+.|+++++ .+..++. ....+++|+.|++++|. +..+. .
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~--------~ 318 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVE--------R 318 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCG--------G
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccC--------c
Confidence 45555666666555333333444455556666666554 2333332 22345556666665542 22221 1
Q ss_pred cceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 014100 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
....+++|+.|++.++ .++.++.+ .+++|++|++++++
T Consensus 319 ~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 NQPQFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHND 356 (597)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSC
T ss_pred ccccCCCCCEEECCCC-CCCCcChh----hcCCCCEEEeeCCC
Confidence 1223555666666554 24444321 25556666665543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.8e-20 Score=185.12 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=118.0
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc--cccCCcccCCCCCEEEEccCCCccc-cccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLIN-VLTLST 296 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~ 296 (430)
..+++|++|+++++ .++...+..+ ..+++|+.|++++|.... .+|..+..+++|+.|+++++. +.. ++.. .
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-D 394 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-S
T ss_pred hhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccc-h
Confidence 57889999999985 6666445555 788999999999975443 455567789999999999875 444 5543 2
Q ss_pred cccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcccc
Q 014100 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 376 (430)
+..+++|++|++++|.....++. . ..++|+.|+++++ .++.++... ..+++|++|++++| .++.+|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~--------~--l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR--------C--LPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG--------S--CCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCC
T ss_pred hccCccCCEEECcCCCCCcchhh--------h--hcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccC
Confidence 46789999999999854333321 1 1279999999997 677777633 36999999999997 667888
Q ss_pred CC-CcCCCCceEEecccCCC
Q 014100 377 QG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 377 ~~-~~~~~~L~~l~l~~~~~ 395 (430)
.. +..+++|+++++++++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 87 67889999999977653
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=6.8e-20 Score=181.88 Aligned_cols=332 Identities=13% Similarity=0.102 Sum_probs=198.9
Q ss_pred cceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ ..+.+..+ +..+..+++|++|+++++.-...+... ....+++|++|++++| .+....
T Consensus 30 ~~l~~L~L----------s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n-~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDL----------SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYN-QFLQLE 95 (455)
T ss_dssp TTCCEEEC----------CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTC-TTCEEC
T ss_pred CccCEEEe----------cCCccCcCChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCC-ccCccC
Confidence 56777777 33444454 455677888888888877532232211 1256778888888876 455544
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+.. +.++++|++|++++|. +..... +...+..+++|++|+++++. +..+..... +..+++|++|+++++
T Consensus 96 ~~~-~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 96 TGA-FNGLANLEVLTLTQCN-LDGAVL-------SGNFFKPLTSLEMLVLRDNN-IKKIQPASF-FLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTT-TTTCTTCCEEECTTSC-CBTHHH-------HSSTTTTCTTCCEEECCSSB-CCSCCCCGG-GGGCTTCCEEECTTC
T ss_pred hhh-ccCcccCCEEeCCCCC-CCcccc-------CcccccCcccCCEEECCCCc-cCccCcccc-cCCCCcccEEeCCCC
Confidence 433 6678888888888773 322100 12223667788888887754 443322111 456778888888776
Q ss_pred CCccccc-------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec---------
Q 014100 177 PDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW--------- 240 (430)
Q Consensus 177 ~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--------- 240 (430)
......+ ..+++.|+++++.+........- .........+++|+.|+++++ .++...
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~------~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG------WEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIA 237 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT------HHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTT
T ss_pred cccccChhhhhccccccccccccccCcccccchhhcc------ccccccccccceeeeEecCCC-cccccchhhhhcccc
Confidence 5322211 24566777777665443210000 000001122345555555553 221111
Q ss_pred ----------------------------ccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccc
Q 014100 241 ----------------------------KENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 241 ----------------------------~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 292 (430)
...+.. ...++|+.|+++++......+..+..+++|+.|+++++. +..++
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 315 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKID 315 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred ccceeeEeeccccccccccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccC
Confidence 111100 123688999998876655566677889999999999875 55443
Q ss_pred cccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC
Q 014100 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM 372 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 372 (430)
.. .+..+++|++|++++|. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|+++++ .+
T Consensus 316 ~~-~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 316 DN-AFWGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp TT-TTTTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred hh-HhcCcccCCEEECCCCc-cCCcC-------hhHhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-cc
Confidence 32 35678999999999874 34332 112234889999999997 56666432 2345899999999986 56
Q ss_pred ccccCC-CcCCCCceEEecccCCC
Q 014100 373 KIFSQG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 373 ~~l~~~-~~~~~~L~~l~l~~~~~ 395 (430)
+.+|.. +..+++|+++++++++.
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCHhHhccCCcccEEEccCCCc
Confidence 667765 46889999999977653
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=3e-20 Score=177.79 Aligned_cols=279 Identities=12% Similarity=0.159 Sum_probs=214.4
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
..+++|++|+++++. +..+. + ...+++|++|++++| .+...++ +.++++|++|++++| .+..+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~-~----~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~------ 103 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQ-G----IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI------ 103 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCT-T----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC------
T ss_pred hhcccccEEEEeCCc-cccch-h----hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc------
Confidence 367889999999876 55432 1 257999999999998 5666544 778999999999998 55544
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCC
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~ 203 (430)
+ . +..+++|++|+++++. +..++. ...+++|++|++++|.....++ .++|++|++++|.+....
T Consensus 104 ---~-~-~~~l~~L~~L~l~~n~-i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-- 171 (347)
T 4fmz_A 104 ---S-A-LQNLTNLRELYLNEDN-ISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-- 171 (347)
T ss_dssp ---G-G-GTTCTTCSEEECTTSC-CCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG--
T ss_pred ---h-H-HcCCCcCCEEECcCCc-ccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch--
Confidence 2 1 4788999999999864 555543 6789999999999998777665 578999999999876644
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEc
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 283 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 283 (430)
....+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..+++ +..+++|+.|+++
T Consensus 172 --------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 172 --------------PIANLTDLYSLSLNYN-QIEDISP--L---ASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIG 229 (347)
T ss_dssp --------------GGGGCTTCSEEECTTS-CCCCCGG--G---GGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECC
T ss_pred --------------hhccCCCCCEEEccCC-ccccccc--c---cCCCccceeecccC-CCCCCch-hhcCCcCCEEEcc
Confidence 2467899999999986 6666543 3 88899999999997 4444443 6788999999999
Q ss_pred cCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccE
Q 014100 284 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 363 (430)
Q Consensus 284 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 363 (430)
+|. +..++. ...+++|++|++++|. +.++. ....+++|+.|++++| .+++++ ....+++|++
T Consensus 230 ~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~ 291 (347)
T 4fmz_A 230 NNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNS 291 (347)
T ss_dssp SSC-CCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSE
T ss_pred CCc-cCCCcc---hhcCCCCCEEECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCE
Confidence 874 555543 5789999999999873 44331 2234889999999997 566664 2345899999
Q ss_pred EEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 364 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 364 L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
|++++|......+..+..+++|++++++++..
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999965555555567789999999988864
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=6.9e-20 Score=186.22 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=87.1
Q ss_pred CCCCcEEecccCCCceeecc---cCchhhhhcccccEEeeccCccccccc---CCcccCCCCCEEEEccCCCcccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~~~~~~ 295 (430)
+++|+.|+++++ .+....+ ..+ ..+++|+.|++++| .++.++ ..+..+++|+.|++++| .++.+|.
T Consensus 333 l~~L~~L~Ls~N-~l~~~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-- 404 (549)
T 2z81_A 333 LKSLEFLDLSEN-LMVEEYLKNSACK---GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD-- 404 (549)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHTCT---TSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--
T ss_pred CccccEEEccCC-ccccccccchhhh---hccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh--
Confidence 566667776664 3333211 112 44566666666665 333332 12445566666666655 3444443
Q ss_pred ccccccCccEEEEcccccchhhhcccc----------cccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 014100 296 TSESLVNLGRMKIADCKMIEQIIQLQV----------GEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 365 (430)
.+..+++|++|++++|. +..+..... -........+++|+.|+++++ +++.++.. ..+++|++|+
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~ 479 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMK 479 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEE
T ss_pred hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEe
Confidence 23445556666655543 221110000 000000123778888888886 56677642 2378999999
Q ss_pred eccCCCCccccC-CCcCCCCceEEecccCC
Q 014100 366 VRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~ 394 (430)
++++ .++.++. .+..+++|+.+++++++
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9887 4445544 46778999999997776
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.9e-20 Score=180.03 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=216.1
Q ss_pred ccccCC-cccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 8 KTFSQG-IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 8 ~~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
+.++.. +..+++|+++.+ .++.+..++. .+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 58 ~~l~~~~~~~l~~L~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~ 123 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNL----------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLV 123 (390)
T ss_dssp SEECTHHHHHCCCCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEE
T ss_pred hhCChhHhcccccCcEEEC----------CCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEE
Confidence 344444 355889999998 3345556654 57789999999999886 5543322 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
+++| .+..++ ...+.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++ ...+
T Consensus 124 L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~l 185 (390)
T 3o6n_A 124 LERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLI 185 (390)
T ss_dssp CCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBC---------CTTTTSSCTTCCEEECCSS-CCSBCC-----GGGC
T ss_pred CCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCcc---------ChhhccCCCCCCEEECCCC-cCCccc-----cccc
Confidence 9998 566644 444678999999999998 45444 3333488999999999986 354442 6778
Q ss_pred CCccEEEEecCCCccccc-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCc
Q 014100 166 PELRYLAIENCPDMETFI-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND 244 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 244 (430)
++|+.|+++++. ++.++ +.++++|++++|.+.... ...+++|+.|+++++ .++.. ..+
T Consensus 186 ~~L~~L~l~~n~-l~~~~~~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~~L~l~~n-~l~~~--~~l 244 (390)
T 3o6n_A 186 PSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVR-----------------GPVNVELTILKLQHN-NLTDT--AWL 244 (390)
T ss_dssp TTCSEEECCSSC-CSEEECCSSCSEEECCSSCCCEEE-----------------CCCCSSCCEEECCSS-CCCCC--GGG
T ss_pred cccceeeccccc-ccccCCCCcceEEECCCCeeeecc-----------------ccccccccEEECCCC-CCccc--HHH
Confidence 999999999875 55544 779999999999877654 244689999999985 66654 233
Q ss_pred hhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccc
Q 014100 245 ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE 324 (430)
Q Consensus 245 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 324 (430)
..+++|+.|+++++......|..+..+++|+.|+++++ .++.++. ....+++|++|++++|. +..+.
T Consensus 245 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~------ 311 (390)
T 3o6n_A 245 ---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVE------ 311 (390)
T ss_dssp ---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCG------
T ss_pred ---cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCCc-ceecC------
Confidence 88899999999998554444667778999999999986 4666654 24678999999999974 44432
Q ss_pred cCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 014100 325 EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 325 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 371 (430)
.....+++|+.|++.++ .++.++.. .+++|++|++++++-
T Consensus 312 --~~~~~l~~L~~L~L~~N-~i~~~~~~----~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 312 --RNQPQFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHNDW 351 (390)
T ss_dssp --GGHHHHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSCE
T ss_pred --ccccccCcCCEEECCCC-ccceeCch----hhccCCEEEcCCCCc
Confidence 12334899999999987 46666543 389999999998753
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=5.6e-20 Score=182.39 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=200.6
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+..+++|+++.+. ++.+..+| .+..+++|++|+++++. +..++ ...+++|++|++++| .+.
T Consensus 38 ~~~l~~L~~L~Ls----------~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~------~~~l~~L~~L~Ls~N-~l~ 98 (457)
T 3bz5_A 38 EEQLATLTSLDCH----------NSSITDMT-GIEKLTGLTKLICTSNN-ITTLD------LSQNTNLTYLACDSN-KLT 98 (457)
T ss_dssp HHHHTTCCEEECC----------SSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC------CTTCTTCSEEECCSS-CCS
T ss_pred hhHcCCCCEEEcc----------CCCcccCh-hhcccCCCCEEEccCCc-CCeEc------cccCCCCCEEECcCC-CCc
Confidence 4457888988883 34445554 57789999999999886 66532 367899999999998 466
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.. + +.++++|++|++++| .+..+ + +..+++|++|+++++ .++.++ +..+++|++|++
T Consensus 99 ~~-~---~~~l~~L~~L~L~~N-~l~~l---------~---~~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l 155 (457)
T 3bz5_A 99 NL-D---VTPLTKLTYLNCDTN-KLTKL---------D---VSQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDC 155 (457)
T ss_dssp CC-C---CTTCTTCCEEECCSS-CCSCC---------C---CTTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEEC
T ss_pred ee-e---cCCCCcCCEEECCCC-cCCee---------c---CCCCCcCCEEECCCC-ccceec-----cccCCcCCEEEC
Confidence 64 3 567999999999998 45444 2 377899999999886 355442 677899999999
Q ss_pred ecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhc
Q 014100 174 ENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAF 250 (430)
Q Consensus 174 ~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l 250 (430)
++|..+..++ .++|+.|++++|.+.++. .+.+++|+.|+++++ .++.+ .+ ..+
T Consensus 156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----------------l~~l~~L~~L~l~~N-~l~~~---~l---~~l 211 (457)
T 3bz5_A 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD-----------------VSQNKLLNRLNCDTN-NITKL---DL---NQN 211 (457)
T ss_dssp TTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----------------CTTCTTCCEEECCSS-CCSCC---CC---TTC
T ss_pred CCCCcccccccccCCcCCEEECCCCccceec-----------------cccCCCCCEEECcCC-cCCee---cc---ccC
Confidence 9987666654 568999999999876643 456778888888874 56554 23 677
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc----------ccccchhhhcc
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA----------DCKMIEQIIQL 320 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~----------~c~~l~~~~~~ 320 (430)
++|+.|+++++ .++.+| +..+++|+.|+++++. ++.++ ...+++|+.|+++ +|..+..+.
T Consensus 212 ~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 212 IQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred CCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 88888888886 455565 5677888888888763 55444 2345555555443 333222221
Q ss_pred cccccCCcceeecccceeecccCCCCceecCCC------cccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 321 QVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
...+++|+.|++++|+.+..++... ....+++|++|+++++ +++.++ +..+++|+.++++++.
T Consensus 282 --------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 282 --------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp --------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred --------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 1226788888888887665554311 1123566777777654 344443 5567888888887655
Q ss_pred C
Q 014100 395 D 395 (430)
Q Consensus 395 ~ 395 (430)
.
T Consensus 351 l 351 (457)
T 3bz5_A 351 I 351 (457)
T ss_dssp C
T ss_pred C
Confidence 3
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5.5e-20 Score=194.47 Aligned_cols=321 Identities=13% Similarity=0.118 Sum_probs=199.8
Q ss_pred hhhhhhhcccCCCCcceeecccccccee------------------eccCCCCCCC--CCCCccEEEeecCcCCCcCCch
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIPA 98 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~ 98 (430)
.+..+|..+..+++|++|+++++. +.. ++... . .+++|++|++++|..... .|.
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~-iP~ 509 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ-LPD 509 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS-CCG
T ss_pred cccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc-ChH
Confidence 444488889999999999999887 554 33222 4 789999999999854444 443
Q ss_pred hHHhhcCCCCEEEEecCCCccE--eeccccccCCcCCC------cccccccceeecccccccccccc--CcccccCCCCc
Q 014100 99 NLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHI------GPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPEL 168 (430)
Q Consensus 99 ~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L 168 (430)
. +.++++|++|++++|..+.. + |..+ +..+++|+.|+++++. +..+|. . +..+++|
T Consensus 510 ~-l~~L~~L~~L~Ls~N~~lsg~~i---------P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~---l~~L~~L 575 (876)
T 4ecn_A 510 F-LYDLPELQSLNIACNRGISAAQL---------KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS---LQKMVKL 575 (876)
T ss_dssp G-GGGCSSCCEEECTTCTTSCHHHH---------HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH---HTTCTTC
T ss_pred H-HhCCCCCCEEECcCCCCcccccc---------hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh---hhcCCCC
Confidence 3 78999999999999963543 3 2221 2455699999999864 557765 4 7889999
Q ss_pred cEEEEecCCCccccc----CCcceEEEecCCCCCcccC----CCc-ceec---c-CccccCCcCCCC--CCCcEEecccC
Q 014100 169 RYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS----EEN-FFLT---D-QIQPLFDEKVAF--PQLRYLELSRL 233 (430)
Q Consensus 169 ~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~----~~~-l~~~---~-~~~~~~~~~~~~--~~L~~L~L~~~ 233 (430)
+.|++++|. ++.+| .++|+.|++++|.+..++. +.+ +..+ + ....+....... ++|+.|+++++
T Consensus 576 ~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 576 GLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCC
Confidence 999999986 44665 5689999999998764441 111 2211 1 111111111222 23566666553
Q ss_pred CCceeecccCchhhh--hcccccEEeeccCcccccccCCcc-cCCCCCEEEEccCCCccccccccc------cccccCcc
Q 014100 234 HKVQHLWKENDESNK--AFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNLG 304 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~------~~~l~~L~ 304 (430)
.+....+....... .+++|+.|++++| .+..+|..+. .+++|+.|+++++ .+..++...+ ..++++|+
T Consensus 655 -~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 655 -KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp -CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred -cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCcc
Confidence 33221111000001 2346777777665 3335554433 5677777777765 3445543211 11234788
Q ss_pred EEEEcccccchhhhcccccccCCcce--eecccceeecccCCCCceecCCCcccCCCCccEEEecc------CCCCcccc
Q 014100 305 RMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIFS 376 (430)
Q Consensus 305 ~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~ 376 (430)
.|++++| .+..+. .... .+++|+.|+++++ .++.++. ....+++|++|++++ |.....+|
T Consensus 732 ~L~Ls~N-~L~~lp--------~~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 732 TIDLRFN-KLTSLS--------DDFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp EEECCSS-CCCCCC--------GGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred EEECCCC-CCccch--------HHhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccCh
Confidence 8888776 333332 1222 4778888888875 4555654 234588888888865 44455677
Q ss_pred CCCcCCCCceEEecccCCC
Q 014100 377 QGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 377 ~~~~~~~~L~~l~l~~~~~ 395 (430)
..+..+++|+.|+++++..
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 7777888888888888765
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.9e-19 Score=183.72 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=94.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCcccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
.+++|+.|+++++ .+..++.. + ..+++|++|++++|......+ ..+..+++|+.|++++|......+. .+..
T Consensus 371 ~~~~L~~L~l~~n-~l~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~ 443 (570)
T 2z63_A 371 GTTSLKYLDLSFN-GVITMSSN-F---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNG 443 (570)
T ss_dssp TCSCCCEEECCSC-SEEEEEEE-E---ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--TTTT
T ss_pred ccCccCEEECCCC-cccccccc-c---cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--hhhc
Confidence 3455555555553 34443332 3 555666666666653332222 2345667777777777643322222 3456
Q ss_pred ccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcccc-CC
Q 014100 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QG 378 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 378 (430)
+++|++|++++|...... .+.....+++|+.|++++| .++.+... ....+++|++|++++| .++.++ ..
T Consensus 444 l~~L~~L~l~~n~l~~~~-------~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENF-------LPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp CTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCcCcEEECcCCcCcccc-------chhhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCC-cCCCCCHHH
Confidence 778888888776532111 1123334788999999987 46665332 2345899999999987 455555 44
Q ss_pred CcCCCCceEEecccCC
Q 014100 379 VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 379 ~~~~~~L~~l~l~~~~ 394 (430)
+..+++|+.+++++++
T Consensus 514 ~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcccCCcEEEecCCc
Confidence 6788999999997765
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.7e-19 Score=179.62 Aligned_cols=311 Identities=13% Similarity=0.191 Sum_probs=212.2
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
+++|+++.+ ..+.++.++ .+..+++|++|+++++. +..+.. ...+++|++|++++| .+...+
T Consensus 45 l~~l~~L~l----------~~~~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQA----------DRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-----LKNLTKLVDILMNNN-QIADIT 106 (466)
T ss_dssp HHTCCEEEC----------CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCG
T ss_pred hccccEEec----------CCCCCccCc-chhhhcCCCEEECCCCc-cCCchh-----hhccccCCEEECCCC-ccccCh
Confidence 567888887 334445554 36779999999999886 665432 368999999999998 556544
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+ +.++++|++|++++| .+..+ +. +..+++|++|+++++. +..++. +..+++|+.|++.++
T Consensus 107 ~---~~~l~~L~~L~L~~n-~l~~~---------~~--~~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 107 P---LANLTNLTGLTLFNN-QITDI---------DP--LKNLTNLNRLELSSNT-ISDISA----LSGLTSLQQLSFGNQ 166 (466)
T ss_dssp G---GTTCTTCCEEECCSS-CCCCC---------GG--GTTCTTCSEEEEEEEE-ECCCGG----GTTCTTCSEEEEEES
T ss_pred h---hcCCCCCCEEECCCC-CCCCC---------hH--HcCCCCCCEEECCCCc-cCCChh----hccCCcccEeecCCc
Confidence 4 778999999999998 55554 22 4788999999999874 555542 778999999999753
Q ss_pred CCccccc----CCcceEEEecCCCCCcccC------CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchh
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTS------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDES 246 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 246 (430)
+...+ .++|++|++++|.+..... ++.+.+.+....-....+.+++|+.|+++++ .++.+. .+
T Consensus 167 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~l-- 239 (466)
T 1o6v_A 167 --VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG--TL-- 239 (466)
T ss_dssp --CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GG--
T ss_pred --ccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch--hh--
Confidence 33322 5789999999998665432 2222222111111112455778888888774 555542 22
Q ss_pred hhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccC
Q 014100 247 NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 247 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++|. +..+++ +..+++|+.|++++|. +..++. ...+++|++|++++|. +.++.
T Consensus 240 -~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------- 303 (466)
T 1o6v_A 240 -ASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS-------- 303 (466)
T ss_dssp -GGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG--------
T ss_pred -hcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch--------
Confidence 677888888888864 344433 6677888888888764 444443 5678888888888864 33332
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|+.|++++| .++++.. ...+++|++|++.+| .++.++ ....+++|+.+++.++..
T Consensus 304 -~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 304 -PISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp -GGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred -hhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 1234788999999887 4555442 234899999999887 455553 455789999999988764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.5e-19 Score=182.78 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=113.0
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccc---ccCCcccCCCCCEEEEccCCCccc-ccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK---LVTPSWHLENLATLEVSKCHGLIN-VLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~ 295 (430)
+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++ .++. +|..+..+++|+.|+++++. +.. ++..
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~- 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR- 422 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-
T ss_pred cCCCCceEEECCCC-ccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-
Confidence 56788999999885 5665444555 77889999999886 4443 34456788899999998875 443 5443
Q ss_pred ccccccCccEEEEcccccchhhhcccccccCCcceee-cccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcc
Q 014100 296 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 374 (430)
....+++|++|+++++.-...++. .+ ++|+.|+++++ .++.++.+. ..+++|++|+++++ .++.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCC
T ss_pred hhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCC
Confidence 356788999999988753222221 13 68999999987 788887644 36899999999886 5668
Q ss_pred ccCC-CcCCCCceEEecccCC
Q 014100 375 FSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 375 l~~~-~~~~~~L~~l~l~~~~ 394 (430)
+|.. +..+++|+.+++++++
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCC
T ss_pred CCHHHHhcCCCCCEEEecCCC
Confidence 8887 7789999999997775
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.2e-19 Score=186.24 Aligned_cols=278 Identities=16% Similarity=0.124 Sum_probs=199.6
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
..+++|+++.+ .++.+..++. .+..+++|++|+++++. +..+.... ...+++|++|++++| .+.
T Consensus 72 ~~l~~L~~L~L----------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~ 136 (597)
T 3oja_B 72 DSFRQVELLNL----------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLS 136 (597)
T ss_dssp HHCCCCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCC
T ss_pred ccCCCCcEEEC----------CCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH---HcCCCCCCEEEeeCC-CCC
Confidence 45788999998 3345556654 67889999999999886 65433221 267899999999998 567
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.+++ ..+.++++|++|++++| .+..+ +...+..+++|+.|+++++ .+..++ ...+++|+.|++
T Consensus 137 ~l~~-~~~~~l~~L~~L~Ls~N-~l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~l~~L~~L~l 199 (597)
T 3oja_B 137 SLPR-GIFHNTPKLTTLSMSNN-NLERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANV 199 (597)
T ss_dssp CCCT-TTTTTCTTCCEEECCSS-CCCBC---------CTTTTTTCTTCCEEECTTS-CCSBCC-----GGGCTTCSEEEC
T ss_pred CCCH-HHhccCCCCCEEEeeCC-cCCCC---------ChhhhhcCCcCcEEECcCC-CCCCcC-----hhhhhhhhhhhc
Confidence 6544 44678999999999998 45544 3333488899999999986 354442 566788888888
Q ss_pred ecCCCccccc-CCcceEEEecCCCCCcccC-----CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhh
Q 014100 174 ENCPDMETFI-SNSVVHVTTDNKEPEKLTS-----EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 174 ~~c~~l~~~~-~~~L~~L~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 247 (430)
+++. ++.++ +.+|+.|++++|.+..+.. ++.+.+.+....-....+.+++|+.|+++++ .++...+..+
T Consensus 200 ~~n~-l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~--- 274 (597)
T 3oja_B 200 SYNL-LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF--- 274 (597)
T ss_dssp CSSC-CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGG---
T ss_pred ccCc-cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHh---
Confidence 8765 44443 6677888887777543321 2222222211111234567899999999995 7887766666
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++ .+..+|.....+++|+.|++++|. +..+|. .+..+++|+.|++++|. +..+.
T Consensus 275 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--------- 340 (597)
T 3oja_B 275 VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNS-IVTLK--------- 340 (597)
T ss_dssp TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------
T ss_pred cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCCC-CCCcC---------
Confidence 88999999999996 566788777789999999999875 556654 35779999999999975 33321
Q ss_pred cceeecccceeecccCC
Q 014100 328 GCVVFEELGYLGLDCLP 344 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~ 344 (430)
...+++|+.|++++++
T Consensus 341 -~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCTTCCCSEEECCSSC
T ss_pred -hhhcCCCCEEEeeCCC
Confidence 2337899999999875
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=6.8e-19 Score=175.83 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=210.6
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhh-hcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCY-EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++++.+.+ ..+.+..++ ..+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 23 l~~ip~~~--~~~l~~L~L----------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~ 86 (477)
T 2id5_A 23 FVAVPEGI--PTETRLLDL----------GKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPG---AFNNLFNLRTLG 86 (477)
T ss_dssp CSSCCSCC--CTTCSEEEC----------CSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEE
T ss_pred cCcCCCCC--CCCCcEEEC----------CCCccceECHhHccCCCCCCEEECCCCc-cCEeChh---hhhCCccCCEEE
Confidence 33444433 246888887 335555654 467889999999999885 6654222 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
++++ .+..+++ ..+.++++|++|++++| .+..+ +...+..+++|++|+++++. +..+... .+..+
T Consensus 87 L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l 151 (477)
T 2id5_A 87 LRSN-RLKLIPL-GVFTGLSNLTKLDISEN-KIVIL---------LDYMFQDLYNLKSLEVGDND-LVYISHR--AFSGL 151 (477)
T ss_dssp CCSS-CCCSCCT-TSSTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEEECCTT-CCEECTT--SSTTC
T ss_pred CCCC-cCCccCc-ccccCCCCCCEEECCCC-ccccC---------ChhHccccccCCEEECCCCc-cceeChh--hccCC
Confidence 9997 5666544 34778999999999998 55555 33335889999999999863 5444322 26788
Q ss_pred CCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceee
Q 014100 166 PELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL 239 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 239 (430)
++|++|++.+|. ++.++ .++|+.|++++|.+....+ .....+++|+.|++++++.+..+
T Consensus 152 ~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--------------~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 152 NSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRD--------------YSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECT--------------TCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeCh--------------hhcccCcccceeeCCCCcccccc
Confidence 999999999985 55544 5789999999998766441 23456789999999988777777
Q ss_pred cccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhh
Q 014100 240 WKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 318 (430)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 318 (430)
+... ....+|++|++++| .++.+|. .+..+++|+.|+++++. +..++.. .+..+++|++|+++++. +..+.
T Consensus 217 ~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~ 288 (477)
T 2id5_A 217 TPNC----LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGGQ-LAVVE 288 (477)
T ss_dssp CTTT----TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSSC-CSEEC
T ss_pred Cccc----ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChh-hccccccCCEEECCCCc-cceEC
Confidence 5544 33458999999887 4555653 45678899999998865 5555432 35678899999998863 33332
Q ss_pred cccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 014100 319 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 319 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
+.....+++|+.|+++++ .++.++.. .+..+++|++|++.+++
T Consensus 289 -------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 289 -------PYAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp -------TTTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred -------HHHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 112233788999999886 56666542 22347888999887764
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=3.7e-19 Score=180.82 Aligned_cols=343 Identities=15% Similarity=0.175 Sum_probs=182.4
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ +++|+++.+. .+.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|+
T Consensus 17 l~~ip~~~--~~~L~~L~Ls----------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~ 80 (549)
T 2z81_A 17 FTSIPSGL--TAAMKSLDLS----------FNKITYIGHGDLRACANLQVLILKSSR-INTIEGDA---FYSLGSLEHLD 80 (549)
T ss_dssp CSSCCSCC--CTTCCEEECC----------SSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEE
T ss_pred cccccccC--CCCccEEECc----------CCccCccChhhhhcCCcccEEECCCCC-cCccChhh---ccccccCCEEE
Confidence 44445443 2678888883 3344444 3456777888888888775 55433221 25677888888
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
+++| .+...++. .++++++|++|++++|. +..+.. |.. +..+++|++|+++++..++.++... +..+
T Consensus 81 Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~-~~~l~~L~~L~L~~n~~~~~~~~~~--~~~l 147 (549)
T 2z81_A 81 LSDN-HLSSLSSS-WFGPLSSLKYLNLMGNP-YQTLGV-------TSL-FPNLTNLQTLRIGNVETFSEIRRID--FAGL 147 (549)
T ss_dssp CTTS-CCCSCCHH-HHTTCTTCCEEECTTCC-CSSSCS-------SCS-CTTCTTCCEEEEEESSSCCEECTTT--TTTC
T ss_pred CCCC-ccCccCHH-HhccCCCCcEEECCCCc-ccccch-------hhh-hhccCCccEEECCCCccccccCHhh--hhcc
Confidence 8876 45554443 36678888888888773 332100 122 2556666666666654444443211 4455
Q ss_pred CCccEEEEecCCCccccc-----------------------------CCcceEEEecCCCCCccc-----------CCCc
Q 014100 166 PELRYLAIENCPDMETFI-----------------------------SNSVVHVTTDNKEPEKLT-----------SEEN 205 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~-----------------------------~~~L~~L~l~~~~~~~~~-----------~~~~ 205 (430)
++|++|+++++..-...+ .++|++|++++|.+.+.. .++.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 566666665544221111 346777777776654421 1111
Q ss_pred ceeccC------ccccC------------------------------CcCCCC---------------------------
Q 014100 206 FFLTDQ------IQPLF------------------------------DEKVAF--------------------------- 222 (430)
Q Consensus 206 l~~~~~------~~~~~------------------------------~~~~~~--------------------------- 222 (430)
+.+.+. ...+. .....+
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 111000 00000 000111
Q ss_pred --CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc---CCcccCCCCCEEEEccCCCcccccc-ccc
Q 014100 223 --PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLT-LST 296 (430)
Q Consensus 223 --~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 296 (430)
++|+.|+++++ .++.++...+ ..+++|+.|+++++.....+| ..+..+++|+.|++++|. ++.++. ...
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 382 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPCSFS---QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI 382 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCHHHH---HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH
T ss_pred hcccceEEEeccC-ccccCCHHHH---hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhh
Confidence 23444444442 3333322211 457788888888775544442 235577888888888764 444432 123
Q ss_pred cccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC----------------cccCCCC
Q 014100 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN----------------YALEFPS 360 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~ 360 (430)
+..+++|++|++++| .++.+. .....+++|+.|+++++. ++.++... ....+++
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp--------~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~ 452 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMP--------DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPR 452 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCC--------SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTT
T ss_pred hhcCCCCCEEECCCC-CCccCC--------hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCCh
Confidence 567888888888886 344332 122234556666665542 32222110 0013678
Q ss_pred ccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 361 LEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 361 L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
|++|++++| +++.+|.. ..+++|++++++++..
T Consensus 453 L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 453 LQELYISRN-KLKTLPDA-SLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCEEECCSS-CCSSCCCG-GGCTTCCEEECCSSCC
T ss_pred hcEEECCCC-ccCcCCCc-ccCccCCEEecCCCcc
Confidence 888888776 55677763 4578888888877653
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.3e-19 Score=176.86 Aligned_cols=278 Identities=17% Similarity=0.140 Sum_probs=195.2
Q ss_pred CcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCC
Q 014100 13 GIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 92 (430)
++..+++|+++.+ ..+.+..++ +..+++|++|+++++. +..+. ...+++|++|++++| .+
T Consensus 59 ~l~~l~~L~~L~L----------s~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~------~~~l~~L~~L~L~~N-~l 118 (457)
T 3bz5_A 59 GIEKLTGLTKLIC----------TSNNITTLD--LSQNTNLTYLACDSNK-LTNLD------VTPLTKLTYLNCDTN-KL 118 (457)
T ss_dssp TGGGCTTCSEEEC----------CSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC------CTTCTTCCEEECCSS-CC
T ss_pred hhcccCCCCEEEc----------cCCcCCeEc--cccCCCCCEEECcCCC-Cceee------cCCCCcCCEEECCCC-cC
Confidence 5677899999999 334455554 7789999999999886 66532 367999999999998 56
Q ss_pred CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEE
Q 014100 93 LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172 (430)
Q Consensus 93 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 172 (430)
..+ + +..+++|++|++++| .+..+ + ...+++|++|+++++..++.++ +..+++|++|+
T Consensus 119 ~~l-~---~~~l~~L~~L~l~~N-~l~~l---------~---l~~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ 176 (457)
T 3bz5_A 119 TKL-D---VSQNPLLTYLNCARN-TLTEI---------D---VSHNTQLTELDCHLNKKITKLD-----VTPQTQLTTLD 176 (457)
T ss_dssp SCC-C---CTTCTTCCEEECTTS-CCSCC---------C---CTTCTTCCEEECTTCSCCCCCC-----CTTCTTCCEEE
T ss_pred Cee-c---CCCCCcCCEEECCCC-cccee---------c---cccCCcCCEEECCCCCcccccc-----cccCCcCCEEE
Confidence 664 3 568999999999998 45443 1 3678999999999987676652 67789999999
Q ss_pred EecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhh
Q 014100 173 IENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 173 l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~ 249 (430)
+++|. ++.++ .++|+.|++++|.+.+.. .+.+++|+.|+++++ .++.++ + ..
T Consensus 177 ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~-----------------l~~l~~L~~L~Ls~N-~l~~ip---~---~~ 231 (457)
T 3bz5_A 177 CSFNK-ITELDVSQNKLLNRLNCDTNNITKLD-----------------LNQNIQLTFLDCSSN-KLTEID---V---TP 231 (457)
T ss_dssp CCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC-----------------CTTCTTCSEEECCSS-CCSCCC---C---TT
T ss_pred CCCCc-cceeccccCCCCCEEECcCCcCCeec-----------------cccCCCCCEEECcCC-cccccC---c---cc
Confidence 99875 55555 568999999999877643 567899999999985 677753 3 77
Q ss_pred cccccEEeeccCcccccccCCcccCCCC----------CEEEEccCCCccccccccccccccCccEEEEcccccchhhhc
Q 014100 250 FANLIRLKISECSKLQKLVTPSWHLENL----------ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~~~~l~~L----------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+++|+.|+++++ .++.++ ...+++| +.|++++|..+..++ ...+++|+.|++++|..+..+..
T Consensus 232 l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 232 LTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc
Confidence 899999999987 455444 2344544 455555555555544 35689999999999987666542
Q ss_pred ccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 014100 320 LQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
....-..-.....++|+.|++.++ +++.++. ..+++|++|+++++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~l----~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNT-ELTELDV----SHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTC-CCSCCCC----TTCTTCSEEECCSS
T ss_pred CCCcceEechhhcccCCEEECCCC-ccccccc----ccCCcCcEEECCCC
Confidence 100000000112345555555553 3444432 34888999998775
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.8e-18 Score=180.41 Aligned_cols=334 Identities=12% Similarity=0.092 Sum_probs=180.5
Q ss_pred cceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++++++.+ ..+.+..++. .+..+++|++|+++++. +..+.... ...+++|++|++++| .+..++
T Consensus 25 ~~l~~L~L----------s~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNL----------THNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPEL---CQKLPMLKVLNLQHN-ELSQLS 89 (680)
T ss_dssp TTCSEEEC----------CSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTH---HHHCTTCCEEECCSS-CCCCCC
T ss_pred CCCcEEEC----------CCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHH---HhcccCcCEEECCCC-ccCccC
Confidence 56888887 3344555554 36678888888888765 44322111 145788888888887 566654
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+. .+.++++|++|++++| .+..+ +...+..+++|++|+++++. +...+.. .+..+++|++|+++++
T Consensus 90 ~~-~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 90 DK-TFAFCTNLTELHLMSN-SIQKI---------KNNPFVKQKNLITLDLSHNG-LSSTKLG--TQVQLENLQELLLSNN 155 (680)
T ss_dssp TT-TTTTCTTCSEEECCSS-CCCCC---------CSCTTTTCTTCCEEECCSSC-CSCCCCC--SSSCCTTCCEEECCSS
T ss_pred hh-hhccCCCCCEEECCCC-ccCcc---------ChhHccccCCCCEEECCCCc-ccccCch--hhcccccCCEEEccCC
Confidence 43 2667888888888887 44444 33334778888888888764 3333221 1557788888888876
Q ss_pred CCccccc--------CCcceEEEecCCCCCcccC-----CCcce------------------------------ecc-Cc
Q 014100 177 PDMETFI--------SNSVVHVTTDNKEPEKLTS-----EENFF------------------------------LTD-QI 212 (430)
Q Consensus 177 ~~l~~~~--------~~~L~~L~l~~~~~~~~~~-----~~~l~------------------------------~~~-~~ 212 (430)
. ++..+ .++|++|++++|.+.+..+ +.++. +.+ ..
T Consensus 156 ~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 156 K-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp C-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred c-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 5 33322 3578888888876554331 11111 000 00
Q ss_pred ccc-CCcCCCC--CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcc
Q 014100 213 QPL-FDEKVAF--PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 213 ~~~-~~~~~~~--~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 289 (430)
... ......+ ++|+.|+++++ .++.+.+..+ ..+++|++|+++++......+..+..+++|+.|+++++..-.
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred cccChhHhhccCcCCCCEEECCCC-CcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 000 0011122 34777777764 5565555555 666777777777764444444455666777777776532111
Q ss_pred -----cccc--ccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------------------
Q 014100 290 -----NVLT--LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------------------ 344 (430)
Q Consensus 290 -----~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------------------ 344 (430)
.++. ...+..+++|++|+++++. +..+.. .....+++|+.|+++++.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-------TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-------hHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 1110 0013456666777666543 222110 011124445555554432
Q ss_pred ---------CCceecCCCcccCCCCccEEEeccCCCCcccc-CCCcCCCCceEEecccCC
Q 014100 345 ---------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 345 ---------~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~l~l~~~~ 394 (430)
.++.+... ....+++|++|+++++.....+| ..+..+++|++++++++.
T Consensus 383 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 383 LHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 23333221 12245667777776654433344 234456677777776654
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=8.9e-19 Score=182.72 Aligned_cols=347 Identities=16% Similarity=0.150 Sum_probs=204.8
Q ss_pred CcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcC
Q 014100 13 GIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTN 91 (430)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 91 (430)
.+..+++|+++.+.+ +.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|++++| .
T Consensus 44 ~~~~l~~L~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~ 108 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGF----------NTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKT---FAFCTNLTELHLMSN-S 108 (680)
T ss_dssp GGGGGTTCSEEECCS----------SCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-C
T ss_pred HHhCCCcCcEEECCC----------CccCccCHHHHhcccCcCEEECCCCc-cCccChhh---hccCCCCCEEECCCC-c
Confidence 356688899999833 333333 3345667888888888775 55443321 256788888888887 4
Q ss_pred CCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEE
Q 014100 92 MLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYL 171 (430)
Q Consensus 92 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L 171 (430)
+..+++.. +.++++|++|++++|. +... +...+..+++|++|+++++. ++.++........+++|++|
T Consensus 109 l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 109 IQKIKNNP-FVKQKNLITLDLSHNG-LSST---------KLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp CCCCCSCT-TTTCTTCCEEECCSSC-CSCC---------CCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEE
T ss_pred cCccChhH-ccccCCCCEEECCCCc-cccc---------CchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEE
Confidence 55554433 6678888888888873 3333 22223566777777776642 33332211112234566666
Q ss_pred EEecCCCccccc---------------------------------CCcceEEEecCCCCCcccC----------CCccee
Q 014100 172 AIENCPDMETFI---------------------------------SNSVVHVTTDNKEPEKLTS----------EENFFL 208 (430)
Q Consensus 172 ~l~~c~~l~~~~---------------------------------~~~L~~L~l~~~~~~~~~~----------~~~l~~ 208 (430)
++++|. ++.++ .++|+.|++++|.+.+..+ ++.+.+
T Consensus 177 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 177 ELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp ECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred ECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 666553 22221 1356666666665443221 222222
Q ss_pred cc-CccccC-CcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc-----cccC----CcccCCCC
Q 014100 209 TD-QIQPLF-DEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ-----KLVT----PSWHLENL 277 (430)
Q Consensus 209 ~~-~~~~~~-~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~----~~~~l~~L 277 (430)
.+ ...... ...+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++..-. .+|. .+..+++|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL---HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTT---TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred CCCCcCccCcccccCcccccEeeCCCC-ccCccChhhh---cCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 11 111111 23567899999999985 7777766666 888999999998753221 2221 45577888
Q ss_pred CEEEEccCCCccccccccccccccCccEEEEccccc-----------------chhhhccc--c-cccCCcceeecccce
Q 014100 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM-----------------IEQIIQLQ--V-GEEAKGCVVFEELGY 337 (430)
Q Consensus 278 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-----------------l~~~~~~~--~-~~~~~~~~~~~~L~~ 337 (430)
+.|+++++. +..++.. .+..+++|++|++++|.. ++.+.... . +..+.....+++|+.
T Consensus 332 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 332 EHLNMEDND-IPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CEEECCSCC-BCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CEEECCCCc-cCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 999888764 4444322 345678888888876531 11000000 0 001112234788999
Q ss_pred eecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 338 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 338 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
|++.++.-...++. .....+++|++|++++|......+..+..+++|+.+++.++.
T Consensus 410 L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 410 LDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EeCCCCcCccccCc-ccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 99998743333432 233458999999999986544445567789999999998765
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=8.5e-19 Score=173.95 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=206.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|. + .++|++|+++++. +..+... ....+++|++|++++|.....+++ ..+.++++|++|++++| .
T Consensus 20 ~~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n-~ 90 (455)
T 3v47_A 20 RGLHQVPE-L--PAHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN-Q 90 (455)
T ss_dssp SCCSSCCC-C--CTTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC-T
T ss_pred CCcccCCC-C--CCccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC-c
Confidence 44566665 2 2789999999886 6654222 226899999999999843334333 33788999999999998 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++.-....+.. ..+..+++|++|++++|......| .++|++|+
T Consensus 91 l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 91 FLQL---------ETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TCEE---------CTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred cCcc---------ChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 5555 2333488999999999997533222222 126678999999999987433322 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCC--CCCCcEEecccCCCceeecccCchh-----hhhcccccEEeeccCccc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDES-----NKAFANLIRLKISECSKL 264 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~L~~L~L~~~~~l~~~~~~~~~~-----~~~l~~L~~L~l~~c~~l 264 (430)
+++|.+.+..+ ..... .++|+.|+++++ .+..+....+.. ...+++|+.|+++++...
T Consensus 161 L~~n~l~~~~~--------------~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 161 LTFNKVKSICE--------------EDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CTTCCBSCCCT--------------TTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred CCCCcccccCh--------------hhhhccccccccccccccC-cccccchhhccccccccccccceeeeEecCCCccc
Confidence 99998766441 11222 268899999885 555543332210 024577888888887433
Q ss_pred ccccCCc-------------------------------------c--cCCCCCEEEEccCCCccccccccccccccCccE
Q 014100 265 QKLVTPS-------------------------------------W--HLENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 265 ~~l~~~~-------------------------------------~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 305 (430)
...+..+ . ..++|+.|+++++. +...+.. .+..+++|++
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~ 303 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQ 303 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCE
T ss_pred ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchh-hcccCCCCCE
Confidence 2221110 0 12578888888765 3333222 3577899999
Q ss_pred EEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCc
Q 014100 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKL 385 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 385 (430)
|+++++. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|++++|......|..+..+++|
T Consensus 304 L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 304 LTLAQNE-INKID-------DNAFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp EECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EECCCCc-ccccC-------hhHhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccc
Confidence 9998874 33332 112233789999999987 56666432 23458999999999985544447778889999
Q ss_pred eEEecccCCC
Q 014100 386 NKVKPTEEED 395 (430)
Q Consensus 386 ~~l~l~~~~~ 395 (430)
++++++++..
T Consensus 374 ~~L~L~~N~l 383 (455)
T 3v47_A 374 KELALDTNQL 383 (455)
T ss_dssp CEEECCSSCC
T ss_pred cEEECCCCcc
Confidence 9999988654
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.3e-18 Score=183.68 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=60.2
Q ss_pred cCCcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecC
Q 014100 11 SQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC 89 (430)
Q Consensus 11 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 89 (430)
+..+..+++|+++.+.+. ..+..+ +..+..+++|++|+++++. +..+... ....+++|++|++++|
T Consensus 41 ~~~~~~l~~L~~LdLs~n---------~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~---~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQ---------YTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPD---AFQGLFHLFELRLYFC 107 (844)
T ss_dssp SSSCSSCCSCSEEEECTT---------CCCCEECTTTTSSCTTCCEEECTTCC-CCEECTT---SSCSCSSCCCEECTTC
T ss_pred hhHCcccccCeEEeCCCC---------CCccccCHHHhcCCCCCCEEECCCCc-CcccCHh---HccCCcccCEeeCcCC
Confidence 445666778888887332 112333 3445666677777776665 4433111 1145666666666665
Q ss_pred cCCCc-CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 90 TNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 90 ~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
.+.. .+....++++++|++|++++|. +..+. +...+..+++|++|+++++
T Consensus 108 -~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~--------~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 108 -GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLY--------LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp -CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCC--------CCGGGGTCSSCCEEEEESS
T ss_pred -CCCcccccCccccccCCCCEEECCCCc-ccccc--------cchhHhhCCCCCEEECCCC
Confidence 3333 2222235566666666666663 22221 1112355666666666554
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=7e-19 Score=167.03 Aligned_cols=206 Identities=16% Similarity=0.237 Sum_probs=114.2
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
...++++|+++++. +..++... ..+++|++|+++++ .+..++. . +.++++|++|++++| .+..+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~~lp~-~-~~~l~~L~~L~Ls~n-~l~~l------- 142 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLMELPD-T-MQQFAGLETLTLARN-PLRAL------- 142 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCCCCCS-C-GGGGTTCSEEEEESC-CCCCC-------
T ss_pred cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-CccchhH-H-HhccCCCCEEECCCC-ccccC-------
Confidence 35778888888765 55544433 56788888888877 4554433 2 667888888888887 44444
Q ss_pred CCcCCCcccccccceeeccccccccccccCccc------ccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN------IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~------~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~ 202 (430)
|..+ ..+++|++|++++|..++.+|..... +..+++|++|++++|. ++.+|
T Consensus 143 --p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp------------------- 199 (328)
T 4fcg_A 143 --PASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLP------------------- 199 (328)
T ss_dssp --CGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC-------------------
T ss_pred --cHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcch-------------------
Confidence 4443 67788888888887767666554210 2236777777777664 33333
Q ss_pred CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEE
Q 014100 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 282 (430)
...+.+++|+.|+++++ .++.++. .+ ..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 200 --------------~~l~~l~~L~~L~L~~N-~l~~l~~-~l---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 200 --------------ASIANLQNLKSLKIRNS-PLSALGP-AI---HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp --------------GGGGGCTTCCEEEEESS-CCCCCCG-GG---GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred --------------HhhcCCCCCCEEEccCC-CCCcCch-hh---ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 11233444555555442 3333322 12 44445555555554444444444444555555555
Q ss_pred ccCCCccccccccccccccCccEEEEcccccc
Q 014100 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 283 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++|+....+|. .+..+++|++|++++|+.+
T Consensus 261 ~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 261 KDCSNLLTLPL--DIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp TTCTTCCBCCT--TGGGCTTCCEEECTTCTTC
T ss_pred CCCCchhhcch--hhhcCCCCCEEeCCCCCch
Confidence 55444444433 1344455555555554433
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=176.47 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=95.4
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccc-ccccccccCccEEEEcccccchhhhcccccccC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|++|+++++.....+|..+..+++|+.|++++|. +..++. ...+..+++|++|+++++.....+...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 466888999998876555567777888999999998875 443321 113567889999999887532223210
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~ 396 (430)
....+++|+.|+++++.-...++... .++|++|++++| .++.+|.....+++|++++++++...
T Consensus 394 -~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 394 -DCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -SCCCCTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhccCccCCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC
Confidence 12336889999999875333333211 268999999987 66688988778999999999887543
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=5.4e-18 Score=172.93 Aligned_cols=326 Identities=18% Similarity=0.179 Sum_probs=215.4
Q ss_pred cccccceeeeEeecccccccCccchhhhh--hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCc----cEEEee
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQK--CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNL----RHLVVD 87 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L----~~L~l~ 87 (430)
+..+++|+++.+. ++.+.. +|..+..+++|++|+++++. +..+.... ...+.+| +.|+++
T Consensus 120 ~~~l~~L~~L~L~----------~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 120 IGHLKTLKELNVA----------HNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD---LRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTCTTCCEEECC----------SSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGG---GHHHHTCTTCCCEEECT
T ss_pred ccccccccEEecC----------CCccceecChhhhcccCCCCEEeCcCCc-cceecHHH---ccchhccchhhhhcccC
Confidence 6678899999983 344443 57778889999999999876 55432211 1234455 566776
Q ss_pred cCcCCCcCCchhHHhhcCCCCEEEEecCCCc------------------------------cEee---------------
Q 014100 88 DCTNMLSAIPANLIRCLNNLRWLEVRNCDSL------------------------------EEVL--------------- 122 (430)
Q Consensus 88 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l------------------------------~~~~--------------- 122 (430)
++ .+...++.. +..+ +|++|++++|... ..+.
T Consensus 186 ~n-~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 186 LN-PMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TC-CCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CC-CceecCHHH-hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 65 344433322 3322 5666666654110 0000
Q ss_pred ccc---cc-cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCC
Q 014100 123 HLE---EL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNK 195 (430)
Q Consensus 123 ~~~---~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~ 195 (430)
.+. .+ ...+.. +..+++|+.|++.++ .+..++.. ...+ +|++|++.+|. ++.+| .++|+.|++++|
T Consensus 263 ~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~l~~~---~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 263 RLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIERVKDF---SYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEETTEEESCSTTT-TGGGTTCSEEEEESC-EECSCCBC---CSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESC
T ss_pred hhhcchhhhhhchhh-hcCcCcccEEEecCc-cchhhhhh---hccC-CccEEeeccCc-ccccCcccccccCEEeCcCC
Confidence 000 11 112233 478899999999986 45566654 5566 99999999986 44555 568999999998
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec--ccCchhhhhcccccEEeeccCcccccccCCccc
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW--KENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 273 (430)
...... ....+++|+.|+++++ .++... +..+ ..+++|++|++++|. +..+++.+..
T Consensus 336 ~~~~~~----------------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~ 394 (570)
T 2z63_A 336 KGGNAF----------------SEVDLPSLEFLDLSRN-GLSFKGCCSQSD---FGTTSLKYLDLSFNG-VITMSSNFLG 394 (570)
T ss_dssp BSCCBC----------------CCCBCTTCCEEECCSS-CCBEEEEEEHHH---HTCSCCCEEECCSCS-EEEEEEEEET
T ss_pred cccccc----------------ccccCCCCCEEeCcCC-ccCccccccccc---cccCccCEEECCCCc-cccccccccc
Confidence 865533 1267899999999985 566543 2233 778999999999974 5555555778
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCC-ceecCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLG 352 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~ 352 (430)
+++|+.|++++|. +...+....+..+++|++|++++|...... +.....+++|+.|++.+|.-. ..++.
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~p~- 464 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPD- 464 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECS-
T ss_pred cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccc--------hhhhhcCCcCcEEECcCCcCccccchh-
Confidence 9999999999875 443332223577899999999998532221 112233789999999997533 24553
Q ss_pred CcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|++|++++|......|..+..+++|++++++++..
T Consensus 465 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 465 -IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp -CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 334589999999999865544577788899999999988753
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=6.6e-18 Score=160.42 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=57.0
Q ss_pred hhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc
Q 014100 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 119 (430)
+..+|..+ .++|++|+++++. +..+.... ...+++|++|++++| .+....|.. +.++++|++|++++| .+.
T Consensus 43 l~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~ 113 (330)
T 1xku_A 43 LEKVPKDL--PPDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLK 113 (330)
T ss_dssp CCSCCCSC--CTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred ccccCccC--CCCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCC
Confidence 34444433 2466666666554 44332211 245666666666665 344443332 555666666666665 343
Q ss_pred EeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+ |..+ +++|++|+++++ .+..++.. ....+++|++|+++++.
T Consensus 114 ~l---------~~~~---~~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 114 EL---------PEKM---PKTLQELRVHEN-EITKVRKS--VFNGLNQMIVVELGTNP 156 (330)
T ss_dssp BC---------CSSC---CTTCCEEECCSS-CCCBBCHH--HHTTCTTCCEEECCSSC
T ss_pred cc---------Chhh---cccccEEECCCC-cccccCHh--HhcCCccccEEECCCCc
Confidence 33 2322 256666666654 23333211 13455666666666554
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.9e-18 Score=164.02 Aligned_cols=223 Identities=21% Similarity=0.275 Sum_probs=166.0
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
+++++++.+ .++.+..+|..+..+++|++|+++++. +..++... ..+++|++|++++| .+..+
T Consensus 80 ~~~l~~L~L----------~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~l~~l- 142 (328)
T 4fcg_A 80 QPGRVALEL----------RSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-PLRAL- 142 (328)
T ss_dssp STTCCEEEE----------ESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-CCCCC-
T ss_pred ccceeEEEc----------cCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-ccccC-
Confidence 467888888 445667888889999999999999886 65554433 68999999999998 56655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCC--------cccccccceeeccccccccccccCcccccCCCCc
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI--------GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPEL 168 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 168 (430)
|.. +.++++|++|++++|..+..+ |..+ +..+++|++|+++++ .++.+|.. +..+++|
T Consensus 143 p~~-l~~l~~L~~L~L~~n~~~~~~---------p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~---l~~l~~L 208 (328)
T 4fcg_A 143 PAS-IASLNRLRELSIRACPELTEL---------PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS---IANLQNL 208 (328)
T ss_dssp CGG-GGGCTTCCEEEEEEETTCCCC---------CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG---GGGCTTC
T ss_pred cHH-HhcCcCCCEEECCCCCCcccc---------ChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh---hcCCCCC
Confidence 433 788999999999999777666 3333 245899999999986 56666654 7788899
Q ss_pred cEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhh
Q 014100 169 RYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNK 248 (430)
Q Consensus 169 ~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 248 (430)
++|++++|. ++.++ ...+.+++|+.|+++++.....+ +..+ .
T Consensus 209 ~~L~L~~N~-l~~l~---------------------------------~~l~~l~~L~~L~Ls~n~~~~~~-p~~~---~ 250 (328)
T 4fcg_A 209 KSLKIRNSP-LSALG---------------------------------PAIHHLPKLEELDLRGCTALRNY-PPIF---G 250 (328)
T ss_dssp CEEEEESSC-CCCCC---------------------------------GGGGGCTTCCEEECTTCTTCCBC-CCCT---T
T ss_pred CEEEccCCC-CCcCc---------------------------------hhhccCCCCCEEECcCCcchhhh-HHHh---c
Confidence 999998875 33222 12455677888888876544443 3444 6
Q ss_pred hcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 249 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 249 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
.+++|+.|++++|.....+|..+..+++|+.|++++|+....+|. .+..+++|+.+++..
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 778888888888877777777777888888888888877777765 367778888887754
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.3e-17 Score=177.91 Aligned_cols=331 Identities=16% Similarity=0.129 Sum_probs=203.1
Q ss_pred ccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.++|+++.+ ..+.+..+ +..+..+++|++|+++++.....+.... ...+++|++|++++| .+...
T Consensus 23 p~~l~~LdL----------s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~~L~~L~Ls~N-~l~~~ 88 (844)
T 3j0a_A 23 LNTTERLLL----------SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSS-KIYFL 88 (844)
T ss_dssp CTTCCEEEE----------ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT---TSSCTTCCEEECTTC-CCCEE
T ss_pred CCCcCEEEC----------CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH---hcCCCCCCEEECCCC-cCccc
Confidence 467999998 33445555 4567899999999999986555542221 267899999999998 56665
Q ss_pred CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 96 IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
.|.. +.++++|++|++++|.-...++ +...+..+++|++|+++++. +........ +..+++|++|++++
T Consensus 89 ~p~~-~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 89 HPDA-FQGLFHLFELRLYFCGLSDAVL--------KDGYFRNLKALTRLDLSKNQ-IRSLYLHPS-FGKLNSLKSIDFSS 157 (844)
T ss_dssp CTTS-SCSCSSCCCEECTTCCCSSCCS--------TTCCCSSCSSCCEEEEESCC-CCCCCCCGG-GGTCSSCCEEEEES
T ss_pred CHhH-ccCCcccCEeeCcCCCCCcccc--------cCccccccCCCCEEECCCCc-ccccccchh-HhhCCCCCEEECCC
Confidence 5544 7889999999999984332221 22234789999999999864 444322111 67899999999998
Q ss_pred CCCccccc-------CCcceEEEecCCCCCcccC--------------CCcceeccC-----c-----------------
Q 014100 176 CPDMETFI-------SNSVVHVTTDNKEPEKLTS--------------EENFFLTDQ-----I----------------- 212 (430)
Q Consensus 176 c~~l~~~~-------~~~L~~L~l~~~~~~~~~~--------------~~~l~~~~~-----~----------------- 212 (430)
+..-...+ .++|+.|++++|.+.+..+ ++.+.+.+. .
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 75322111 1466666666665433211 111111100 0
Q ss_pred -------------------cccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc
Q 014100 213 -------------------QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 213 -------------------~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 273 (430)
...|.. ...++|+.|+++++ .+..+.+..+ ..+++|+.|+++++......+..+..
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAG-LARSSVRHLDLSHG-FVFSLNSRVF---ETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTT-TTTSCCCEEECTTC-CCCEECSCCS---SSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred cccccccccccccccCCCChhhhhc-cccCCccEEECCCC-cccccChhhh---hcCCCCCEEECCCCcCCCCChHHhcC
Confidence 000000 01357888888874 6666666655 77788888888886444333455667
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 353 (430)
+++|+.|+++++. +..+... .+..+++|+.|+++++ .+..+. +.....+++|+.|+++++ .++.++.
T Consensus 313 l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQ-------DQTFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CSSCCEEEEESCC-CSCCCSC-SCSSCTTCCEEECCSC-CCCCCC-------SSCSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCCCCEEECCCCC-CCccCHH-HhcCCCCCCEEECCCC-CCCccC-------hhhhcCCCCCCEEECCCC-CCCcccC--
Confidence 8888888888764 4443222 3566788888888776 333332 112233677888888775 3444332
Q ss_pred cccCCCCccEEEeccCCCCccccCC----------------------CcCCCCceEEecccCCC
Q 014100 354 YALEFPSLEHVVVRQCPTMKIFSQG----------------------VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~l~~~----------------------~~~~~~L~~l~l~~~~~ 395 (430)
+++|+.|.+.++. ++.+|.. ...+++|+.+++.++..
T Consensus 380 ----~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 380 ----IPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ----CCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ----CCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 5566666665542 2233322 12567788888776653
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.2e-17 Score=170.18 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=96.2
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccc-ccccccccCccEEEEcccccchhhhcccccccC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|++|+++++.....+|..+..+++|+.|+++++ .++.++. ...+..+++|++|+++++.....+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-------
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-------
Confidence 45688999999887655556777788899999999886 4554432 11356789999999988753221221
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCC-CCccEEEeccCCCCccccCCCcCCCCceEEecccCCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~ 396 (430)
.....+++|+.|+++++.--..++. .+ ++|++|++++| .++.+|.....+++|++++++++...
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence 1223478999999998753222332 13 69999999987 77789988889999999999887643
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=6e-18 Score=160.84 Aligned_cols=151 Identities=12% Similarity=0.112 Sum_probs=75.2
Q ss_pred CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCc
Q 014100 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303 (430)
Q Consensus 224 ~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 303 (430)
+|+.|+++++ .++.++.. ..++|+.|+++++......+..+..+++|+.|+++++. +..++.. .+..+++|
T Consensus 173 ~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L 243 (332)
T 2ft3_A 173 KLNYLRISEA-KLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTL 243 (332)
T ss_dssp CCSCCBCCSS-BCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTC
T ss_pred ccCEEECcCC-CCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCC
Confidence 5666666653 44443221 12566666666643222222345556666666666543 3333321 23456666
Q ss_pred cEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc-----cCCCCccEEEeccCCCC--cccc
Q 014100 304 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFPSLEHVVVRQCPTM--KIFS 376 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~L~~L~l~~c~~l--~~l~ 376 (430)
++|+++++. +..+. .....+++|+.|++.++ .++.++..... ...++|+.|++.+++.. ...|
T Consensus 244 ~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 244 RELHLDNNK-LSRVP--------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp CEEECCSSC-CCBCC--------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred CEEECCCCc-CeecC--------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 666666652 22221 12233566666666664 45554432111 11456777777776543 2333
Q ss_pred CCCcCCCCceEEecccC
Q 014100 377 QGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 377 ~~~~~~~~L~~l~l~~~ 393 (430)
..+..+++|+.+++.++
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 44455677777777554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.7e-17 Score=157.82 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=138.9
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+ .++|++|+++++. +..+.... ...+++|++|++++| .+....+.. +.++++|++|++++| .+
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CC
T ss_pred CccccCCCC--CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cC
Confidence 344555444 3566666666654 44332211 245666666666665 344443332 556666666666665 33
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc--ccc----CCcceEEEe
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME--TFI----SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~----~~~L~~L~l 192 (430)
..+ |..+ +++|++|+++++ .+..++... +..+++|++|++.++..-. ..+ ..+|++|++
T Consensus 115 ~~l---------~~~~---~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 115 VEI---------PPNL---PSSLVELRIHDN-RIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp CSC---------CSSC---CTTCCEEECCSS-CCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred Ccc---------Cccc---cccCCEEECCCC-ccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 333 3332 156666666654 344343221 4456666666666654211 111 115666666
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPS 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~ 271 (430)
++|.+..++ ....++|+.|+++++ .++.+.+..+ ..+++|+.|+++++. +..++ ..+
T Consensus 180 ~~n~l~~l~-----------------~~~~~~L~~L~l~~n-~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~~~ 237 (332)
T 2ft3_A 180 SEAKLTGIP-----------------KDLPETLNELHLDHN-KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENGSL 237 (332)
T ss_dssp CSSBCSSCC-----------------SSSCSSCSCCBCCSS-CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTTGG
T ss_pred cCCCCCccC-----------------ccccCCCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChhHh
Confidence 666555433 122356777777663 5555544444 566677777776653 33333 245
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCc-eec
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFC 350 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~ 350 (430)
..+++|+.|+++++ .+..+|. .+..+++|++|+++++ .+..+....+... ......++|+.|++.+++... .+.
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHcccc-ccccccccccceEeecCcccccccC
Confidence 56667777777665 3445543 2455667777777664 3333321100000 000114556667776655321 122
Q ss_pred CCCcccCCCCccEEEeccC
Q 014100 351 LGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~~c 369 (430)
. .....+++|+.+++.++
T Consensus 313 ~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 313 P-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp G-GGGTTBCCSTTEEC---
T ss_pred c-ccccccchhhhhhcccc
Confidence 1 12233566666666554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=3.2e-17 Score=155.66 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=131.0
Q ss_pred hhhhhhhh-cccCCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 38 STIQKCYE-EMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+.+..++. .+..+++|++|+++++. +..+ +.. ...+++|++|+++++ .+..++.. + .++|++|++++|
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l~~L~~L~Ls~n-~l~~l~~~-~---~~~L~~L~l~~n 131 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGA----FAPLVKLERLYLSKN-QLKELPEK-M---PKTLQELRVHEN 131 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT----TTTCTTCCEEECCSS-CCSBCCSS-C---CTTCCEEECCSS
T ss_pred CcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHH----hcCCCCCCEEECCCC-cCCccChh-h---cccccEEECCCC
Confidence 55666665 57789999999999876 5543 222 267899999999997 56664432 1 379999999998
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc---CCcceEEEe
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTT 192 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l 192 (430)
.+..+ +...+..+++|+.|+++++. +............+++|++|+++++. ++.+| .++|++|++
T Consensus 132 -~l~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 132 -EITKV---------RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL 199 (330)
T ss_dssp -CCCBB---------CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred -ccccc---------CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence 55544 33334788999999999864 33211111226778899999998875 44444 346666666
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 272 (430)
++|.+.+..+ .....+++|+.|+++++ .++.+.+..+ ..+++|+.|++++| .+..+|..+.
T Consensus 200 ~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~ 260 (330)
T 1xku_A 200 DGNKITKVDA--------------ASLKGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLA 260 (330)
T ss_dssp TTSCCCEECT--------------GGGTTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTT
T ss_pred CCCcCCccCH--------------HHhcCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhc
Confidence 6666544321 12344566666666653 4555544444 55566666666664 3445555555
Q ss_pred cCCCCCEEEEccC
Q 014100 273 HLENLATLEVSKC 285 (430)
Q Consensus 273 ~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++
T Consensus 261 ~l~~L~~L~l~~N 273 (330)
T 1xku_A 261 DHKYIQVVYLHNN 273 (330)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 5566666666554
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.6e-16 Score=163.93 Aligned_cols=134 Identities=19% Similarity=0.092 Sum_probs=84.4
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcce
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV 330 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 330 (430)
++++.++++.+......+.....+++|+.|+++++.....+... .+..+++|++|++++| .++.+.. ....
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~ 515 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSP-------TAFN 515 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-------TTTT
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcCh-------HHHc
Confidence 34444444433222222334446677888888877655443322 3567888999999887 4444421 1223
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCC-CCceEEecccCCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEEED 395 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~l~l~~~~~ 395 (430)
.+++|+.|+++++ +++.++.. ....+++|++|+++++......|..+..+ ++|+.+++++++.
T Consensus 516 ~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 516 SLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 3788999999986 67776542 23458899999998875444445556665 5899999977664
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=8e-17 Score=159.14 Aligned_cols=232 Identities=14% Similarity=0.136 Sum_probs=178.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|..+. ++++.|+++++. +..+.... ...+++|++|++++| .+..+.+. .+.++++|++|++++| .
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-R 123 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-c
Confidence 55677877653 789999999876 66554322 267899999999997 56665543 3788999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++ .+..++... ...+++|++|++.+|..++.++ .++|++|+
T Consensus 124 l~~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 124 LTTI---------PNGAFVYLSKLKELWLRNN-PIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSC---------CTTTSCSCSSCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCee---------CHhHhhccccCceeeCCCC-cccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6655 5555688999999999986 466664322 6778999999999988887766 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+..+. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 192 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 192 LAMCNLREIP----------------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTSCCSSCC----------------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCcccc----------------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCceeEEChhhh
Confidence 9999877654 3567889999999985 8888877777 889999999999975443334567
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .++.++.. .+..+++|+.|++++++
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 78999999999986 46666543 35678999999997654
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=6.9e-17 Score=160.18 Aligned_cols=232 Identities=14% Similarity=0.104 Sum_probs=177.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+..+|..+. +++++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENN-IQMIQADT---FRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-W 134 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCcCccCCCCC--CCccEEECcCCc-CceECHHH---cCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-c
Confidence 45667776553 689999999876 66543222 267899999999987 566655443 778999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++ .+..++... ...+++|++|++.+|..++.++ .++|++|+
T Consensus 135 l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 135 LTVI---------PSGAFEYLSKLRELWLRNN-PIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CSBC---------CTTTSSSCTTCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred CCcc---------ChhhhcccCCCCEEECCCC-CcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 6655 5555688999999999986 466664432 6778999999999988887776 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+.++. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 203 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 203 LGMCNIKDMP----------------NLTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp CTTSCCSSCC----------------CCTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCcccccc----------------cccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHh
Confidence 9999877654 3567889999999984 7888777766 888999999999975444445567
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .++.++.. .+..+++|+.|++++++
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 78899999999987 46666543 35678999999998754
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.7e-16 Score=162.41 Aligned_cols=253 Identities=19% Similarity=0.134 Sum_probs=126.3
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+++.|+++++. +..++... .++|++|++++| ++..+++ .+++|++|++++| .+..+ |
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l---------p 97 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL---------P 97 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCC------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCC---------C
T ss_pred CCcEEEecCCC-cCccChhh------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcC---------C
Confidence 46666666544 44333222 256666666665 3444333 3566666666665 34333 2
Q ss_pred CCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCcceec
Q 014100 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 132 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
. .+++|++|+++++ .++.++. .+++|+.|++++|. ++.+| .++|++|++++|.+.++.
T Consensus 98 ~----~l~~L~~L~Ls~N-~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~-------- 157 (622)
T 3g06_A 98 V----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP-------- 157 (622)
T ss_dssp C----CCTTCCEEEECSC-CCCCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC--------
T ss_pred C----CCCCCCEEECcCC-cCCCCCC------CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC--------
Confidence 2 3456666666654 3443321 34566666666553 44444 356666666666554432
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 289 (430)
..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++|+.|++++| .++
T Consensus 158 ----------~~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~ 214 (622)
T 3g06_A 158 ----------ALPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RLT 214 (622)
T ss_dssp ----------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCS
T ss_pred ----------CccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCC-ccc
Confidence 12345566666552 444432 22355666666554 3333432 2345556665554 233
Q ss_pred ccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 014100 290 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 290 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
.++. .+++|+.|+++++ .+..+. ..+++|+.|+++++ .++.++. .+++|++|++++|
T Consensus 215 ~l~~-----~~~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 215 SLPA-----LPSGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp SCCC-----CCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred ccCC-----CCCCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence 3331 2355666666554 232221 11455666666554 4444443 1455666666554
Q ss_pred CCCccccCCCcCCCCceEEecccCC
Q 014100 370 PTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 370 ~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.++.+|..+..+++|+.+++++++
T Consensus 272 -~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 -QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -CCCcCCHHHhhccccCEEEecCCC
Confidence 344555555555666666665543
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.2e-16 Score=158.23 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=104.7
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. +..+. ...++|++|++++| .+..+ |. +.++++|++|++++| .+..+
T Consensus 111 ~~L~~L~l~~n~-l~~l~-------~~~~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~l--------- 168 (454)
T 1jl5_A 111 QSLKSLLVDNNN-LKALS-------DLPPLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKL--------- 168 (454)
T ss_dssp TTCCEEECCSSC-CSCCC-------SCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCC---------
T ss_pred CCCcEEECCCCc-cCccc-------CCCCCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCccc---------
Confidence 567777776654 33211 11257888888877 45554 32 667888888888887 44444
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|.. .++|++|+++++ .++.++ . +..+++|++|++++|. ++.+| +.+|++|++++|.+..+.
T Consensus 169 p~~----~~~L~~L~L~~n-~l~~l~-~---~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp------- 231 (454)
T 1jl5_A 169 PDL----PPSLEFIAAGNN-QLEELP-E---LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP------- 231 (454)
T ss_dssp CCC----CTTCCEEECCSS-CCSSCC-C---CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-------
T ss_pred CCC----cccccEEECcCC-cCCcCc-c---ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-------
Confidence 222 257888888875 455554 2 6778888888888775 44444 457888888888765433
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
..+.+++|+.|+++++ .++.++ ..+++|+.|+++++. +..+|.. +++|+.|+++++
T Consensus 232 ---------~~~~l~~L~~L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 232 ---------ELQNLPFLTTIYADNN-LLKTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp ---------CCTTCTTCCEEECCSS-CCSSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred ---------ccCCCCCCCEEECCCC-cCCccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 2345666666666663 444432 122556666666542 3334332 245555555554
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.5e-16 Score=157.62 Aligned_cols=265 Identities=15% Similarity=0.101 Sum_probs=144.1
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|++|+++++ .+..++. .+++|++|++++| .+..+ + ...++|++|+++++ .++.+| .
T Consensus 91 ~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l---------~----~~~~~L~~L~L~~n-~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKAL---------S----DLPPLLEYLGVSNN-QLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCC---------C----SCCTTCCEEECCSS-CCSSCC-C
T ss_pred CCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcc---------c----CCCCCCCEEECcCC-CCCCCc-c
Confidence 56677777665 4444322 1356777777666 33333 1 11257888888875 455555 2
Q ss_pred cccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccC---CCcceecc-CccccCCcCCCCCCCcEEeccc
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTS---EENFFLTD-QIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~---~~~l~~~~-~~~~~~~~~~~~~~L~~L~L~~ 232 (430)
+..+++|++|+++++. ++.+| +.+|++|++++|.+.++.. ++++...+ ....+-.-....++|+.|++++
T Consensus 149 ---~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 149 ---LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred ---cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 6778888888888774 55555 4578888888887665432 11111111 0000000001224666666666
Q ss_pred CCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++.++ .+ ..+++|+.|+++++ .+..+|. .+++|+.|++++|. +..++. .+++|++|+++++.
T Consensus 225 n-~l~~lp--~~---~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 225 N-ILEELP--EL---QNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI 288 (454)
T ss_dssp S-CCSSCC--CC---TTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC
T ss_pred C-cCCccc--cc---CCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc
Confidence 4 444433 13 56666777777664 3444443 23567777776653 444432 23677777777653
Q ss_pred cchhhhccc-------c-cccCCcc-eeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCC
Q 014100 313 MIEQIIQLQ-------V-GEEAKGC-VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP 383 (430)
Q Consensus 313 ~l~~~~~~~-------~-~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 383 (430)
+..+.... . ...-... ...++|+.|+++++ .++.++. .+++|++|++++| .++.+|. .++
T Consensus 289 -l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~ 357 (454)
T 1jl5_A 289 -FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQ 357 (454)
T ss_dssp -CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCT
T ss_pred -cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhh
Confidence 22211000 0 0000000 01246666776664 4554443 1578999999887 5667777 478
Q ss_pred CceEEecccCCCC
Q 014100 384 KLNKVKPTEEEDG 396 (430)
Q Consensus 384 ~L~~l~l~~~~~~ 396 (430)
+|++++++++...
T Consensus 358 ~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 358 NLKQLHVEYNPLR 370 (454)
T ss_dssp TCCEEECCSSCCS
T ss_pred hccEEECCCCCCC
Confidence 9999999887643
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=2.4e-17 Score=155.32 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=126.9
Q ss_pred CCcceeeccccccce---eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc-Eeecccc
Q 014100 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEE 126 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~ 126 (430)
.++++|+++++. +. .++... ..+++|++|+++++.++....|.. +.++++|++|++++| .+. .+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~----- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAI----- 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEEC-----
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcC-----
Confidence 456666666554 32 222222 456666666666432444333333 556666666666666 333 22
Q ss_pred ccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcc
Q 014100 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENF 206 (430)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l 206 (430)
|..+ ..+++|++|+++++.-...++.. +..+++|++|++++|.....+|
T Consensus 118 ----p~~~-~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p----------------------- 166 (313)
T 1ogq_A 118 ----PDFL-SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNRISGAIP----------------------- 166 (313)
T ss_dssp ----CGGG-GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCEEECC-----------------------
T ss_pred ----CHHH-hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCCcccCcCC-----------------------
Confidence 2222 55666666666664322233322 4556666666665554211221
Q ss_pred eeccCccccCCcCCCCC-CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 207 FLTDQIQPLFDEKVAFP-QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
...+.++ +|+.|+++++ .++...+..+ ..++ |+.|+++++......+..+..+++|+.|+++++
T Consensus 167 ----------~~l~~l~~~L~~L~L~~N-~l~~~~~~~~---~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 167 ----------DSYGSFSKLFTSMTISRN-RLTGKIPPTF---ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp ----------GGGGCCCTTCCEEECCSS-EEEEECCGGG---GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred ----------HHHhhhhhcCcEEECcCC-eeeccCChHH---hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 1223344 6666666663 4443333333 3443 666666665444444445556666666666665
Q ss_pred CCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 014100 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 286 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 365 (430)
.--..++. ...+++|++|+++++.....+ +.....+++|+.|+++++.--..++.. ..+++|++++
T Consensus 232 ~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~ 297 (313)
T 1ogq_A 232 SLAFDLGK---VGLSKNLNGLDLRNNRIYGTL--------PQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSA 297 (313)
T ss_dssp EECCBGGG---CCCCTTCCEEECCSSCCEECC--------CGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGG
T ss_pred ceeeecCc---ccccCCCCEEECcCCcccCcC--------ChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHH
Confidence 42222221 345566777777665321111 112233566777777665322234432 2366777777
Q ss_pred eccCCCCcc
Q 014100 366 VRQCPTMKI 374 (430)
Q Consensus 366 l~~c~~l~~ 374 (430)
+.+++.+..
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 776665543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.7e-16 Score=156.81 Aligned_cols=221 Identities=17% Similarity=0.201 Sum_probs=172.6
Q ss_pred cceeeeEeecccccccCccchhhhhhh-hcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCY-EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++++.+.+ .++.+..++ ..+..+++|++|+++++. +..+.... ...+++|++|++++| .+..++
T Consensus 64 ~~l~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 64 TNTRLLNL----------HENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp TTCSEEEC----------CSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSCC
T ss_pred CCCcEEEc----------cCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCeeC
Confidence 45777777 335555655 457889999999999886 66544322 257899999999998 677655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+. .+.++++|++|++++| .+..+ +...+..+++|++|++.++..+..++... +..+++|++|++++|
T Consensus 129 ~~-~~~~l~~L~~L~L~~N-~i~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 129 NG-AFVYLSKLKELWLRNN-PIESI---------PSYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMC 195 (440)
T ss_dssp TT-TSCSCSSCCEEECCSC-CCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCSSCCEEECTTS
T ss_pred Hh-HhhccccCceeeCCCC-ccccc---------CHHHhhhCcccCEeCCCCCCCcceeCcch--hhcccccCeecCCCC
Confidence 43 3778999999999998 56666 55556889999999999988888775432 677999999999998
Q ss_pred CCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN 252 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~ 252 (430)
. ++.+| .++|+.|++++|.+.+..+ .....+++|+.|++++ +.++.+.+..+ ..+++
T Consensus 196 ~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~ 256 (440)
T 3zyj_A 196 N-LREIPNLTPLIKLDELDLSGNHLSAIRP--------------GSFQGLMHLQKLWMIQ-SQIQVIERNAF---DNLQS 256 (440)
T ss_dssp C-CSSCCCCTTCSSCCEEECTTSCCCEECT--------------TTTTTCTTCCEEECTT-CCCCEECTTSS---TTCTT
T ss_pred c-CccccccCCCcccCEEECCCCccCccCh--------------hhhccCccCCEEECCC-CceeEEChhhh---cCCCC
Confidence 5 56665 5689999999998776541 3356789999999998 48888877777 88999
Q ss_pred ccEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 253 LIRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 253 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
|+.|+++++ .++.+++. +..+++|+.|++++++
T Consensus 257 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 999999997 56666544 5678999999998865
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=2.3e-16 Score=161.38 Aligned_cols=257 Identities=17% Similarity=0.094 Sum_probs=192.5
Q ss_pred cceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 97 (430)
.++++|.+ .++.++.+|..+. ++|++|+++++. ++.++ ..+++|++|++++| .+..++.
T Consensus 40 ~~l~~L~l----------s~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp-------~~l~~L~~L~Ls~N-~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNV----------GESGLTTLPDCLP--AHITTLVIPDNN-LTSLP-------ALPPELRTLEVSGN-QLTSLPV 98 (622)
T ss_dssp HCCCEEEC----------CSSCCSCCCSCCC--TTCSEEEECSCC-CSCCC-------CCCTTCCEEEECSC-CCSCCCC
T ss_pred CCCcEEEe----------cCCCcCccChhhC--CCCcEEEecCCC-CCCCC-------CcCCCCCEEEcCCC-cCCcCCC
Confidence 34777777 4456677877664 899999999886 66432 25789999999998 5666544
Q ss_pred hhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 98 ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+++|++|++++| .+..+ |. .+++|+.|+++++ .++.++. .+++|++|++++|.
T Consensus 99 -----~l~~L~~L~Ls~N-~l~~l---------~~----~l~~L~~L~L~~N-~l~~lp~------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 99 -----LPPGLLELSIFSN-PLTHL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ 152 (622)
T ss_dssp -----CCTTCCEEEECSC-CCCCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC
T ss_pred -----CCCCCCEEECcCC-cCCCC---------CC----CCCCcCEEECCCC-CCCcCCC------CCCCCCEEECcCCc
Confidence 5899999999998 55554 22 5689999999986 4666643 35899999999985
Q ss_pred Cccccc--CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccE
Q 014100 178 DMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 178 ~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
++.+| +.+|+.|++++|.+..+. ..+++|+.|+++++ .++.++ ..+++|+.
T Consensus 153 -l~~l~~~~~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~ 205 (622)
T 3g06_A 153 -LASLPALPSELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDN-QLASLP-------TLPSELYK 205 (622)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCE
T ss_pred -CCCcCCccCCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCC-CCCCCC-------CccchhhE
Confidence 66665 678999999999877643 34689999999984 676654 23478999
Q ss_pred EeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeeccc
Q 014100 256 LKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 256 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
|.+++| .+..+|. .+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+. . .+++|
T Consensus 206 L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp--------~---~~~~L 263 (622)
T 3g06_A 206 LWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLP--------M---LPSGL 263 (622)
T ss_dssp EECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCC--------C---CCTTC
T ss_pred EECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCC--------c---ccccC
Confidence 999986 5666654 3578999999886 566665 45689999999886 455443 1 37889
Q ss_pred ceeecccCCCCceecCCCcccCCCCccEEEeccCCCCc
Q 014100 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 336 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+.|++++| .++.++. ....+++|++|++++++...
T Consensus 264 ~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 264 LSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred cEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 99999986 6777765 34568999999999886543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.3e-16 Score=156.36 Aligned_cols=221 Identities=18% Similarity=0.221 Sum_probs=173.0
Q ss_pred cceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ .++.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|+++++ .+..++
T Consensus 75 ~~l~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~ 139 (452)
T 3zyi_A 75 SNTRYLNL----------MENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDN-WLTVIP 139 (452)
T ss_dssp TTCSEEEC----------CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCSBCC
T ss_pred CCccEEEC----------cCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCC-cCCccC
Confidence 46788887 34555555 3557889999999999886 66544222 257899999999998 566654
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+ ..+.++++|++|++++| .+..+ +...+..+++|++|+++++..++.++... ...+++|++|++++|
T Consensus 140 ~-~~~~~l~~L~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 140 S-GAFEYLSKLRELWLRNN-PIESI---------PSYAFNRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMC 206 (452)
T ss_dssp T-TTSSSCTTCCEEECCSC-CCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCTTCCEEECTTS
T ss_pred h-hhhcccCCCCEEECCCC-Cccee---------CHhHHhcCCcccEEeCCCCCCccccChhh--ccCCCCCCEEECCCC
Confidence 4 34778999999999998 56666 55556899999999999988888876432 678999999999998
Q ss_pred CCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN 252 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~ 252 (430)
. ++.++ .++|++|++++|.+.+..+ .....+++|+.|+++++ .++.+.+..+ ..+++
T Consensus 207 ~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~ 267 (452)
T 3zyi_A 207 N-IKDMPNLTPLVGLEELEMSGNHFPEIRP--------------GSFHGLSSLKKLWVMNS-QVSLIERNAF---DGLAS 267 (452)
T ss_dssp C-CSSCCCCTTCTTCCEEECTTSCCSEECG--------------GGGTTCTTCCEEECTTS-CCCEECTTTT---TTCTT
T ss_pred c-ccccccccccccccEEECcCCcCcccCc--------------ccccCccCCCEEEeCCC-cCceECHHHh---cCCCC
Confidence 5 55555 5689999999999876541 23567899999999984 7888877777 88999
Q ss_pred ccEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 253 LIRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 253 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
|+.|+++++ .++.+++. +..+++|+.|++++++
T Consensus 268 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 999999997 56666644 5678999999999865
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=7.2e-17 Score=152.10 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=174.8
Q ss_pred CCccEEEeecCcCCCc--CCchhHHhhcCCCCEEEEecCCCcc-EeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 79 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.+++.|+++++ .+.. ..|.. +.++++|++|+++++..+. .+ |..+ ..+++|++|+++++.-...+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~---------p~~l-~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPI---------PPAI-AKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCC---------CGGG-GGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccC---------ChhH-hcCCCCCEEECcCCeeCCcC
Confidence 68999999987 4554 33433 7789999999999633443 23 4444 78889999999886533345
Q ss_pred ccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCC
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 235 (430)
|.. +..+++|++|+++++.....+| ...+.+++|++|+++++ .
T Consensus 118 p~~---~~~l~~L~~L~Ls~N~l~~~~p---------------------------------~~~~~l~~L~~L~L~~N-~ 160 (313)
T 1ogq_A 118 PDF---LSQIKTLVTLDFSYNALSGTLP---------------------------------PSISSLPNLVGITFDGN-R 160 (313)
T ss_dssp CGG---GGGCTTCCEEECCSSEEESCCC---------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred CHH---HhCCCCCCEEeCCCCccCCcCC---------------------------------hHHhcCCCCCeEECcCC-c
Confidence 443 6677888888887764211111 23466899999999985 6
Q ss_pred ceeecccCchhhhhcc-cccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccc
Q 014100 236 VQHLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++...+..+ ..++ +|+.|+++++.....+|..+..++ |+.|+++++. +...... .+..+++|+.|+++++...
T Consensus 161 l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 161 ISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASV-LFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGG-GCCTTSCCSEEECCSSEEC
T ss_pred ccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCH-HHhcCCCCCEEECCCCcee
Confidence 774445555 6676 999999999866657777777776 9999999875 4433222 3578999999999987532
Q ss_pred hhhhcccccccCCcceeecccceeecccCCCCc-eecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccC
Q 014100 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~ 393 (430)
..+. ....+++|+.|+++++. ++ .++. ....+++|++|+++++.....+|.. ..+++|+.+++.++
T Consensus 235 ~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLG---------KVGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGG---------GCCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecC---------cccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 2221 12347899999999874 54 4554 3445899999999998665577776 67889999999776
Q ss_pred C
Q 014100 394 E 394 (430)
Q Consensus 394 ~ 394 (430)
+
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 5
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=6.7e-16 Score=147.95 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=160.2
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|++|+++++ .+..+++.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 456777777665 455443322 556677777777766 44444 2222356666777776654 3333322
Q ss_pred CcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.. +..+++|++|+++++ .+..+.. ......+++|+.|+++++..++
T Consensus 118 ~~--~~~l~~L~~L~L~~n-------------------~l~~l~~-------------~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 118 SW--FKPLSSLTFLNLLGN-------------------PYKTLGE-------------TSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp HH--HTTCTTCSEEECTTC-------------------CCSSSCS-------------SCSCTTCTTCCEEEEEESSSCC
T ss_pred hH--hCCCccCCEEECCCC-------------------CCcccCc-------------hhhhccCCCCcEEECCCCcccc
Confidence 10 234555555555554 3332220 0124568899999999876678
Q ss_pred eecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhh
Q 014100 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
.+.+..+ ..+++|+.|+++++......|..+..+++|+.|+++++. +..++.. +...+++|++|+++++. +..+
T Consensus 164 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 164 KIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI-FVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH-HHHHTTTEEEEEEESCB-CTTC
T ss_pred ccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh-hhhhcccccEEECCCCc-cccc
Confidence 8766666 788999999999986555556777889999999998875 5555432 34458899999998874 3332
Q ss_pred hcccccccCCcceeecccceeecccCCCCc-----eecCCCcccCCCCccEEEeccCCCCccccCCC-cCCCCceEEecc
Q 014100 318 IQLQVGEEAKGCVVFEELGYLGLDCLPSLT-----SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPT 391 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~ 391 (430)
.... . ......+.++.+++.++. +. .++. ....+++|++|++++| .++.+|... ..+++|++++++
T Consensus 238 ~~~~---l-~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 238 HFSE---L-STGETNSLIKKFTFRNVK-ITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCC----------CCCCCCEEEEESCB-CCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccc---c-ccccccchhhcccccccc-ccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 2100 0 011224556677776652 22 2332 2235899999999987 666888875 689999999997
Q ss_pred cCC
Q 014100 392 EEE 394 (430)
Q Consensus 392 ~~~ 394 (430)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 775
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=9.1e-17 Score=154.03 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=170.5
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
++.++.+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+....+.. +.++++|++|++++|
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN- 110 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-
T ss_pred CCCccccccccc--ccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-
Confidence 356677777654 589999998776 66554322 267889999999887 566654433 677889999999887
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHV 190 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L 190 (430)
.+..+ +...+..+++|++|+++++ .++.++... ....+++|++|++++|..++.++ .++|++|
T Consensus 111 ~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 111 YLSNL---------SSSWFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSC---------CHHHHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred cCCcC---------CHhHhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 45444 3333467889999999875 455554411 16678899999999886666554 4578889
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-C
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-T 269 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~ 269 (430)
++++|.+.+..+ ...+.+++|++|+++++ .++.++...+ ..+++|+.|+++++. ++.++ .
T Consensus 180 ~l~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~l~~~~~~~~---~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 180 EIDASDLQSYEP--------------KSLKSIQNVSHLILHMK-QHILLLEIFV---DVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp EEEETTCCEECT--------------TTTTTCSEEEEEEEECS-CSTTHHHHHH---HHTTTEEEEEEESCB-CTTCCCC
T ss_pred ECCCCCcCccCH--------------HHHhccccCCeecCCCC-ccccchhhhh---hhcccccEEECCCCc-ccccccc
Confidence 998888765431 23566788999999885 5555443322 567899999998874 33322 1
Q ss_pred C---cccCCCCCEEEEccCCCccc-----cccccccccccCccEEEEcccccchhhhcccccccCCc-ceeecccceeec
Q 014100 270 P---SWHLENLATLEVSKCHGLIN-----VLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG-CVVFEELGYLGL 340 (430)
Q Consensus 270 ~---~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~~L~~L~l 340 (430)
. ....+.++.+++.++. +.+ ++. .+..+++|++|+++++ .+..+. .. ...+++|+.|++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~--------~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVK-ITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVP--------DGIFDRLTSLQKIWL 308 (353)
T ss_dssp ------CCCCCCEEEEESCB-CCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCC--------TTTTTTCTTCCEEEC
T ss_pred ccccccccchhhcccccccc-ccCcchhhhHH--HHhcccCCCEEECCCC-CCCccC--------HHHHhcCCCCCEEEe
Confidence 1 2245667888887753 222 221 3466888999999886 344432 11 133788899999
Q ss_pred ccCC
Q 014100 341 DCLP 344 (430)
Q Consensus 341 ~~c~ 344 (430)
.+++
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 8875
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.5e-18 Score=177.90 Aligned_cols=253 Identities=19% Similarity=0.182 Sum_probs=140.2
Q ss_pred cccccceeeeEeeccc----c-----cccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEE
Q 014100 14 IVSTPKLHEVQVKGEL----R-----RWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHL 84 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~----~-----~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 84 (430)
+.+||+|+++.+.+.. . .|.+.....+..+. ..+++|++|+++++. +.+..... ....+++|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-~~~~~~~~--l~~~~~~L~~L 135 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS---SSYTWLEEIRLKRMV-VTDDCLEL--IAKSFKNFKVL 135 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH--HHHHCTTCCEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH---HhCCCCCeEEeeCcE-EcHHHHHH--HHHhCCCCcEE
Confidence 4568999999998731 1 23333333344443 468899999999886 44211111 01258999999
Q ss_pred EeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccc-cccccccCccccc
Q 014100 85 VVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLKRFCNFTENII 163 (430)
Q Consensus 85 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~ 163 (430)
++++|..+.......++.++++|++|++++|. +.... ...+.. +...+++|++|+++++. .+........ ..
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~-~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~l~~l-~~ 208 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS-GHWLSH----FPDTYTSLVSLNISCLASEVSFSALERL-VT 208 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC-GGGGGG----SCTTCCCCCEEECTTCCSCCCHHHHHHH-HH
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc-hHHHHH----HhhcCCcCcEEEecccCCcCCHHHHHHH-HH
Confidence 99999765543333446689999999999985 43321 111111 23467899999999875 1211100000 34
Q ss_pred CCCCccEEEEecCCCccccc-----CCcceEEEecCCCCC--------------cccCCCcce-ecc-CccccCCcCCCC
Q 014100 164 EMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE--------------KLTSEENFF-LTD-QIQPLFDEKVAF 222 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~--------------~~~~~~~l~-~~~-~~~~~~~~~~~~ 222 (430)
.+++|++|++.+|..++.++ .++|++|.++++... ....++.+. ..+ +...+......+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 57999999999987666654 568888887655310 001111110 000 000000111245
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEE
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 282 (430)
++|++|++++|. ++...... ....+++|++|++.+|..-..++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~-l~~~~l~~--~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 289 SRLTTLNLSYAT-VQSYDLVK--LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TTCCEEECTTCC-CCHHHHHH--HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCEEEccCCC-CCHHHHHH--HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 778888887764 44321110 1145677777777766211122222224566666666
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=5.9e-17 Score=152.96 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=108.0
Q ss_pred chhhhhhhhcc-cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 37 NSTIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 37 ~~~~~~l~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.+.+...+..+ ..+++|++|+++++. +..+... ....+++|++|++++| .+...++ +..+++|++|++++|
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHH---HHTTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSS
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHH---HhhCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCC
Confidence 34455444433 345577777777764 4432211 1146777777777776 3444333 556777777777776
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceE
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
.+..+ ...++|++|+++++ .+..++ ...+++|++|+++++. ++.++ .++|++
T Consensus 91 -~l~~l--------------~~~~~L~~L~l~~n-~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 91 -YVQEL--------------LVGPSIETLHAANN-NISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp -EEEEE--------------EECTTCCEEECCSS-CCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEE
T ss_pred -ccccc--------------cCCCCcCEEECCCC-ccCCcC-----ccccCCCCEEECCCCC-CCCccchhhhccCCCCE
Confidence 44444 23367777777764 344332 2235666666666654 22222 234555
Q ss_pred EEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc
Q 014100 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 268 (430)
|++++|.+.+... ... ..+++|+.|+++++ .++.++.. ..+++|+.|+++++ .++.++
T Consensus 149 L~Ls~N~l~~~~~--------------~~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~ 207 (317)
T 3o53_A 149 LDLKLNEIDTVNF--------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMG 207 (317)
T ss_dssp EECTTSCCCEEEG--------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEEC
T ss_pred EECCCCCCCcccH--------------HHHhhccCcCCEEECCCC-cCcccccc-----cccccCCEEECCCC-cCCcch
Confidence 5555554433220 001 12345555555542 34443211 22445555555543 333344
Q ss_pred CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 269 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+.+..+++|+.|+++++ .++.++. .+..+++|+.|+++++
T Consensus 208 ~~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGN 247 (317)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTC
T ss_pred hhhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCC
Confidence 44444455555555443 2333332 1234445555555443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.6e-16 Score=143.90 Aligned_cols=215 Identities=16% Similarity=0.089 Sum_probs=125.7
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+ .++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++|..+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTC
T ss_pred CcccCCcCC--CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCc
Confidence 344555433 3567777777655 55433221 245677777777765 445443332 556777777777776444
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++. +..++.. .+..+++|++|+++++. +.
T Consensus 94 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-------------------l~ 142 (285)
T 1ozn_A 94 RSV---------DPATFHGLGRLHTLHLDRCG-LQELGPG--LFRGLAALQYLYLQDNA-------------------LQ 142 (285)
T ss_dssp CCC---------CTTTTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSSC-------------------CC
T ss_pred ccc---------CHHHhcCCcCCCEEECCCCc-CCEECHh--HhhCCcCCCEEECCCCc-------------------cc
Confidence 444 22223566677777776653 3333211 13445556666555543 22
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLA 278 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 278 (430)
.... ...+.+++|+.|+++++ .++.++...+ ..+++|+.|+++++......|..+..+++|+
T Consensus 143 ~~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 143 ALPD--------------DTFRDLGNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CCCT--------------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccCH--------------hHhccCCCccEEECCCC-cccccCHHHh---cCccccCEEECCCCcccccCHhHccCccccc
Confidence 2210 12355678888888874 6777665555 6778888888888654444456667778888
Q ss_pred EEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 279 TLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 279 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.|+++++. +..++.. .+..+++|++|++++++
T Consensus 205 ~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFANN-LSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred EeeCCCCc-CCcCCHH-HcccCcccCEEeccCCC
Confidence 88887763 5544432 24567788888887754
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=2.4e-17 Score=155.73 Aligned_cols=241 Identities=13% Similarity=0.093 Sum_probs=135.7
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|++|++++| .+...++.. +.++++|++|++++| .+.... . +..+++|++|+++++. ++.+
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~---------~--~~~l~~L~~L~Ls~n~-l~~l- 95 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETL---------D--LESLSTLRTLDLNNNY-VQEL- 95 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEE---------E--ETTCTTCCEEECCSSE-EEEE-
T ss_pred cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcch---------h--hhhcCCCCEEECcCCc-cccc-
Confidence 4678999999887 566654433 778899999999888 454442 1 3677888888888763 4443
Q ss_pred cCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccC
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 233 (430)
...++|++|++++|. ++.++ .++|++|++++|.+.+..+ ...+.+++|+.|+++++
T Consensus 96 ------~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 96 ------LVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ------EECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGG--------------BCTGGGSSEEEEECTTS
T ss_pred ------cCCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccc--------------hhhhccCCCCEEECCCC
Confidence 234778888887765 33333 3456667776666554331 12334566677777663
Q ss_pred CCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccccc
Q 014100 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++...+..+ ...+++|+.|+++++. ++.++.. ..+++|+.|+++++ .+..++.. +..+++|++|+++++ .
T Consensus 155 -~l~~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 155 -EIDTVNFAEL--AASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-K 225 (317)
T ss_dssp -CCCEEEGGGG--GGGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-C
T ss_pred -CCCcccHHHH--hhccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-c
Confidence 5555433322 0345666666666653 4444322 24666666666664 34444332 445666666666664 2
Q ss_pred chhhhcccccccCCcceeecccceeecccCCCC-ceecCCCcccCCCCccEEEeccCCCCc
Q 014100 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+..+. .....+++|+.|++.+++-. ..++. ....+++|+.+++.++..++
T Consensus 226 l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHH
T ss_pred ccchh--------hHhhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchhcc
Confidence 33221 11223556666666655432 11211 22235556666665554443
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2e-15 Score=155.68 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=95.0
Q ss_pred ceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc
Q 014100 19 KLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 97 (430)
+++++.+ -.+.++.++. .+..+++|++|+++++. ++.+..+. ...+++|++|++++| .+..+++
T Consensus 53 ~~~~LdL----------s~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~---f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDL----------SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TCCEEEC----------TTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCEEEe----------eCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhH---hcCCCCCCEEEccCC-cCCCCCH
Confidence 5777777 4466777774 47788999999999876 77655433 256889999999987 5776554
Q ss_pred hhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 98 ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
..+.++++|++|++++| .+..+ +...+..+++|++|+++++. +..+..... ...+++|++|+++++.
T Consensus 118 -~~f~~L~~L~~L~Ls~N-~l~~l---------~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 118 -GAFSGLSSLQKLVAVET-NLASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp -GGGTTCTTCCEEECTTS-CCCCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred -HHhcCCCCCCEEECCCC-cCCCC---------ChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcc
Confidence 34788999999999988 55555 45545888999999998863 443321111 6678899999998765
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=1.2e-17 Score=171.23 Aligned_cols=355 Identities=12% Similarity=0.049 Sum_probs=192.7
Q ss_pred cccccceeeeEeeccc---------ccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCC-ccE
Q 014100 14 IVSTPKLHEVQVKGEL---------RRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN-LRH 83 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-L~~ 83 (430)
..++|+|+++.+.+.. ..|.+.....+..+ ...+++|++|+++++. +.+..... ....+++ |++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~-i~~~~~~~--l~~~~~~~L~~ 142 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI---SNNLRQLKSVHFRRMI-VSDLDLDR--LAKARADDLET 142 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH---HHHCTTCCEEEEESCB-CCHHHHHH--HHHHHGGGCCE
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH---HhhCCCCCeEEeeccE-ecHHHHHH--HHHhccccCcE
Confidence 4568999999997731 12333333333333 2368999999999885 44211000 0012555 999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccc----cccccCc
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL----KRFCNFT 159 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l----~~~~~~~ 159 (430)
|++++|..+.......+..++++|++|++++|. +.... .+++. .+...+++|++|+++++..- ..++..
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~-~~~l~----~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~- 215 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKD-GKWLH----ELAQHNTSLEVLNFYMTEFAKISPKDLETI- 215 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCC-SHHHH----HHHHHCCCCCEEECTTCCCSSCCHHHHHHH-
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcc-hhHHH----HHHhcCCCccEEEeeccCCCccCHHHHHHH-
Confidence 999998643322222345689999999999983 22110 00000 01246788888888765321 122111
Q ss_pred ccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCC-c-------cc---CCCcceecc-CccccCCcCCCC
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE-K-------LT---SEENFFLTD-QIQPLFDEKVAF 222 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~-~-------~~---~~~~l~~~~-~~~~~~~~~~~~ 222 (430)
...+++|++|++.+|. +..++ .++|++|.+++.... . .. .++.+.+.+ ....+......+
T Consensus 216 --~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 216 --ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp --HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred --HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 4567888888888875 33333 567888888653211 0 00 111111110 001111123345
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc----------CCCccccc
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVL 292 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~----------c~~l~~~~ 292 (430)
++|++|++++|. ++..... .....+++|+.|++.++..-..++.....+++|++|++++ |+.+++..
T Consensus 293 ~~L~~L~Ls~~~-l~~~~~~--~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETEDHC--TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGCCEEEETTCC-CCHHHHH--HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred CCCcEEecCCCc-CCHHHHH--HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 677777777764 3332111 1115567777777764322223333334567788888874 66665443
Q ss_pred cccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeeccc---CCCCceecCC----CcccCCCCccEEE
Q 014100 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVV 365 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~~~~L~~L~ 365 (430)
.......+++|++|++ .|..+.+..... ....+++|+.|++.+ |+.+++.+.. .....+++|++|+
T Consensus 370 ~~~l~~~~~~L~~L~l-~~~~l~~~~~~~------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 370 LIALAQGCQELEYMAV-YVSDITNESLES------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp HHHHHHHCTTCSEEEE-EESCCCHHHHHH------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCccCeEEEe-ecCCccHHHHHH------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 3223456788888888 445544332110 111267888888874 5566654221 0123488999999
Q ss_pred eccCCC-Ccc--ccCCCcCCCCceEEecccCC
Q 014100 366 VRQCPT-MKI--FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~-l~~--l~~~~~~~~~L~~l~l~~~~ 394 (430)
+.+|.. ++. +......+++|+++++.++.
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 987753 221 11112347889999997665
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=143.10 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC--chhHHhhcCCCCEEEEecC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c 115 (430)
..++.+|..+ .++|++|+++++. +..++... ...+++|++|+++++ .+.... +.. +.++++|++|++++|
T Consensus 17 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred CCcccCCCCC--CCCCCEEECCCCc-cCccCHhH---hhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC
Confidence 4456676654 3689999999876 65544322 257889999999887 444322 233 556899999999988
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+..+ |.. +..+++|++|+++++ .+..++... ....+++|++|++++|.
T Consensus 89 -~i~~l---------~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 89 -GVITM---------SSN-FLGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTH 137 (306)
T ss_dssp -SEEEE---------EEE-EETCTTCCEEECTTS-EEESSTTTT-TTTTCTTCCEEECTTSC
T ss_pred -ccccC---------hhh-cCCCCCCCEEECCCC-cccccccch-hhhhccCCCEEECCCCc
Confidence 45555 333 367889999999875 344443211 15677888888887765
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=4.9e-16 Score=145.82 Aligned_cols=236 Identities=16% Similarity=0.152 Sum_probs=140.5
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++|+++.+ .++.+..++.. +..+++|++|+++++. +..+.... .....+++|++|+
T Consensus 19 l~~ip~~~--~~~l~~L~L----------~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~L~~L~ 84 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLEL----------ESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCS-QSDFGTTSLKYLD 84 (306)
T ss_dssp CSSCCSCC--CTTCCEEEC----------CSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEE-HHHHSCSCCCEEE
T ss_pred cccCCCCC--CCCCCEEEC----------CCCccCccCHhHhhccccCCEEECCCCc-cCcccCcc-cccccccccCEEE
Confidence 44455443 357999988 44556677765 5789999999999876 55321000 1114589999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcC-CCcccccccceeeccccccccccccCcccccC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE-HIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 164 (430)
+++| .+..+++. +.++++|++|++++| .+..+ +. ..+..+++|++|+++++. +...... .+..
T Consensus 85 Ls~n-~i~~l~~~--~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~ 148 (306)
T 2z66_A 85 LSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQM---------SEFSVFLSLRNLIYLDISHTH-TRVAFNG--IFNG 148 (306)
T ss_dssp CCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESS---------TTTTTTTTCTTCCEEECTTSC-CEECSTT--TTTT
T ss_pred CCCC-ccccChhh--cCCCCCCCEEECCCC-ccccc---------ccchhhhhccCCCEEECCCCc-CCccchh--hccc
Confidence 9998 45554433 668999999999998 44433 22 334788999999999874 3333221 1567
Q ss_pred CCCccEEEEecCCCcc-cccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccC
Q 014100 165 MPELRYLAIENCPDME-TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 165 l~~L~~L~l~~c~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
+++|++|+++++.... ..+ .....+++|+.|+++++ .++.+.+..
T Consensus 149 l~~L~~L~l~~n~l~~~~~~---------------------------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 194 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLP---------------------------------DIFTELRNLTFLDLSQC-QLEQLSPTA 194 (306)
T ss_dssp CTTCCEEECTTCEEGGGEEC---------------------------------SCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred CcCCCEEECCCCccccccch---------------------------------hHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence 8888888888775222 111 11334556666666653 455554444
Q ss_pred chhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc-cCccEEEEcccc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADCK 312 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~ 312 (430)
+ ..+++|+.|+++++. +..++. .+..+++|+.|+++++. +...... .+..+ ++|++|++++++
T Consensus 195 ~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 F---NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp T---TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred h---cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 4 555666666666543 333322 34455666666666553 2222211 12334 366666665543
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.6e-18 Score=172.14 Aligned_cols=244 Identities=15% Similarity=0.071 Sum_probs=129.8
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCC----CccEEEeecC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFN----NLRHLVVDDC 89 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~L~~L~l~~c 89 (430)
+..+++|+++.+.+... .......++..+..+++|++|+++++. +.+..... ....++ +|++|++++|
T Consensus 24 ~~~~~~L~~L~L~~~~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~--l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC--VLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH--HHHTTCSTTCCCCEEECTTS
T ss_pred HhhcCCccEEEccCCCC-----CHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH--HHHHHhhCCCceeEEEccCC
Confidence 45578888888854321 223345677778888999999999876 54210000 001233 7999999988
Q ss_pred cCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC--cccccC
Q 014100 90 TNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF--TENIIE 164 (430)
Q Consensus 90 ~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~ 164 (430)
.+.... ....+.++++|++|++++|. +.... .......+....++|++|++++|. ++..... ...+..
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG----LQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRA 168 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH----HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH----HHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhh
Confidence 444311 12236788999999999884 43220 110011111234578889888873 3322100 001445
Q ss_pred CCCccEEEEecCCCccccc-----------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccC
Q 014100 165 MPELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 165 l~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 233 (430)
+++|++|++++|. ++... .++|++|++++|.+.... ...+......+++|++|+++++
T Consensus 169 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----------~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 169 KPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----------CRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----------HHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----------HHHHHHHHHhCCCccEEeccCC
Confidence 7888888888876 43321 347888888888765421 0000011223456666666654
Q ss_pred CCceeecccCchh--hhhcccccEEeeccCccccc-----ccCCcccCCCCCEEEEccC
Q 014100 234 HKVQHLWKENDES--NKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 234 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c 285 (430)
.++......+.. ...+++|++|++++|. ++. ++..+..+++|+.|+++++
T Consensus 238 -~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 238 -KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred -cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 333321111000 0124556666666552 222 3333444555666666554
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=3.1e-15 Score=143.21 Aligned_cols=230 Identities=19% Similarity=0.194 Sum_probs=176.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++++|..+ .+++++|+++++. ++.++.+. ...+++|++|++++|..... .+...+.++++|+++.+.++..
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA---FSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTS---STTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHH---HcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCc
Confidence 5667888766 4789999999876 88776543 25789999999999843343 4444477889988877776668
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccC-------CcceEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHV 190 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-------~~L~~L 190 (430)
+..+ +.+.+..+++|++|+++++ .+..++... .....++..+++.++..++.++. ..++.|
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~l~~n-~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 92 LLYI---------NPEAFQNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEE---------CTTSBCCCTTCCEEEEEEE-CCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cccc---------Cchhhhhcccccccccccc-ccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8888 5566689999999999986 455554321 34456788899988887877662 368889
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP 270 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 270 (430)
++++|.+..+. .......+|++|.+.+++.++.++...+ ..+++|+.|+++++ .++.+|..
T Consensus 160 ~L~~N~i~~i~---------------~~~f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 160 WLNKNGIQEIH---------------NSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp ECCSSCCCEEC---------------TTSSTTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS
T ss_pred ccccccccCCC---------------hhhccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh
Confidence 99999887655 2334456899999998889999887777 88999999999986 68888763
Q ss_pred cccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 271 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
.+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred --hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 478899999999999998885 57889999999864
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.6e-17 Score=170.25 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=30.6
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcc-ccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|++++|. +++.........+++|++|++++|+.... +......+++|+++++++|.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 4556666666553 32221111112366777777777654211 11122345677777776664
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=6.3e-15 Score=133.12 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=136.0
Q ss_pred hhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc
Q 014100 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 119 (430)
++.+|. + .++|++|+++++. ++.+.... ...+++|++|+++++..+..+++.. +.++++|++|++++|..+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCC
T ss_pred ccccCC-C--CCcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCee
Confidence 556665 2 2378888888776 66554422 2567888888888874466655433 6778888888888855777
Q ss_pred EeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCcc---EEEEecCCCcccccCCcceEEEecCCC
Q 014100 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELR---YLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
.+ +...+..+++|++|+++++. ++.++. ...+++|+ +|++++++.++.+++.
T Consensus 95 ~i---------~~~~f~~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~----------- 149 (239)
T 2xwt_C 95 YI---------DPDALKELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN----------- 149 (239)
T ss_dssp EE---------CTTSEECCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT-----------
T ss_pred Ec---------CHHHhCCCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCcc-----------
Confidence 76 44445778888888888753 555543 34455555 7777766445444321
Q ss_pred CCcccCCCcceeccCccccCCcCCCCCCCc-EEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccC
Q 014100 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL 274 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l 274 (430)
....+++|+ .|++++ +.++.++...+ .. ++|+.|+++++..++.+++ .+..+
T Consensus 150 ---------------------~~~~l~~L~~~L~l~~-n~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 150 ---------------------AFQGLCNETLTLKLYN-NGFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp ---------------------TTTTTBSSEEEEECCS-CCCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ---------------------cccchhcceeEEEcCC-CCCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 134567788 888877 36666655544 33 6788888888755666654 34566
Q ss_pred -CCCCEEEEccCCCccccccccccccccCccEEEEccccc
Q 014100 275 -ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 275 -~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
++|+.|+++++ .++.++. ..+++|+.|++.++..
T Consensus 204 ~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 204 YSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTWT 238 (239)
T ss_dssp SBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC--
T ss_pred ccCCcEEECCCC-ccccCCh----hHhccCceeeccCccC
Confidence 78888888774 4566553 2577888888877653
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=9.2e-15 Score=135.66 Aligned_cols=213 Identities=19% Similarity=0.190 Sum_probs=148.3
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++|+++.+ .++.+..++. .+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 23 l~~ip~~~--~~~l~~L~l----------~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~ 86 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFL----------HGNRISHVPAASFRACRNLTILWLHSNV-LARIDAA---AFTGLALLEQLD 86 (285)
T ss_dssp CSSCCTTC--CTTCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEE
T ss_pred cccCCcCC--CCCceEEEe----------eCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHh---hcCCccCCCEEe
Confidence 44444433 467888888 4455566663 47789999999999875 6654221 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
++++..+....+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++... +..+
T Consensus 87 l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l 152 (285)
T 1ozn_A 87 LSDNAQLRSVDPAT-FHGLGRLHTLHLDRC-GLQEL---------GPGLFRGLAALQYLYLQDN-ALQALPDDT--FRDL 152 (285)
T ss_dssp CCSCTTCCCCCTTT-TTTCTTCCEEECTTS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTC
T ss_pred CCCCCCccccCHHH-hcCCcCCCEEECCCC-cCCEE---------CHhHhhCCcCCCEEECCCC-cccccCHhH--hccC
Confidence 99985567654443 778999999999998 44444 3333578999999999986 455553321 4567
Q ss_pred CCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCch
Q 014100 166 PELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE 245 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 245 (430)
++|++|+++++. ++.+++ .....+++|+.|+++++ .++...+..+
T Consensus 153 ~~L~~L~l~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~- 197 (285)
T 1ozn_A 153 GNLTHLFLHGNR-ISSVPE--------------------------------RAFRGLHSLDRLLLHQN-RVAHVHPHAF- 197 (285)
T ss_dssp TTCCEEECCSSC-CCEECT--------------------------------TTTTTCTTCCEEECCSS-CCCEECTTTT-
T ss_pred CCccEEECCCCc-ccccCH--------------------------------HHhcCccccCEEECCCC-cccccCHhHc-
Confidence 888888887764 333321 11345788888888884 6777766666
Q ss_pred hhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCC
Q 014100 246 SNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHG 287 (430)
Q Consensus 246 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~ 287 (430)
..+++|+.|+++++ .+..+++ .+..+++|+.|++++++.
T Consensus 198 --~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 198 --RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp --TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred --cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 77888999999886 4444443 366788899999988753
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=9.3e-16 Score=153.32 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=128.6
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|++|++++| .+...++.. +.++++|++|++++| .+.... | +..+++|+.|+++++ .++.+
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~---l~~l~~L~~L~Ls~N-~l~~l 95 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETL--------D---LESLSTLRTLDLNNN-YVQEL 95 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEE--------E---CTTCTTCCEEECCSS-EEEEE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCc--------c---cccCCCCCEEEecCC-cCCCC
Confidence 35678999999987 566655544 788999999999988 455442 1 377889999999886 45544
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEeccc
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 232 (430)
+ ..++|++|++++|. ++.++ .++|+.|++++|.+.+..+ ...+.+++|+.|++++
T Consensus 96 ~-------~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 96 L-------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKL 153 (487)
T ss_dssp E-------ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTT
T ss_pred C-------CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCC
Confidence 2 33788888888775 33333 4466777777776555431 1234466777777766
Q ss_pred CCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++...+..+. ..+++|+.|++++|. ++.++. ...+++|+.|+++++. +..++.. +..+++|+.|+++++.
T Consensus 154 N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 154 N-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK 225 (487)
T ss_dssp S-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC
T ss_pred C-CCCCcChHHHh--hhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCCc
Confidence 3 55554443330 255677777776653 444433 2246667777776653 4444332 4456666666666642
Q ss_pred cchhhhcccccccCCcceeecccceeecccCC
Q 014100 313 MIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
+..+. .....+++|+.|++.+++
T Consensus 226 -l~~lp--------~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 226 -LVLIE--------KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCEEC--------TTCCCCTTCCEEECTTCC
T ss_pred -Ccccc--------hhhccCCCCCEEEcCCCC
Confidence 22221 122235566666666553
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=6.1e-15 Score=147.38 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=166.7
Q ss_pred eeeEeecccccccCccchhhhh-hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchh
Q 014100 21 HEVQVKGELRRWEGNLNSTIQK-CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPAN 99 (430)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 99 (430)
+.+.+.|..|....-....+.. +......+++|++|+++++. +..+... ....+++|++|++++| .+...++
T Consensus 3 ~~l~~ng~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~-- 75 (487)
T 3oja_A 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD-- 75 (487)
T ss_dssp CEEEEETTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSC-CCCCCGG---GGTTCTTCCEEECTTS-CCEEEEE--
T ss_pred ceecCCCceeecccCchhhhHHHHHHhcccCCCccEEEeeCCc-CCCCCHH---HHhCCCCCCEEEeeCC-CCCCCcc--
Confidence 3455555444433322222222 22223345589999999876 6543321 1267899999999987 4555444
Q ss_pred HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCc
Q 014100 100 LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 100 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 179 (430)
+..+++|++|++++| .+..+ ...++|+.|+++++. +..++ ...+++|+.|++++|..-
T Consensus 76 -l~~l~~L~~L~Ls~N-~l~~l--------------~~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 76 -LESLSTLRTLDLNNN-YVQEL--------------LVGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANNKIT 133 (487)
T ss_dssp -CTTCTTCCEEECCSS-EEEEE--------------EECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSSCCC
T ss_pred -cccCCCCCEEEecCC-cCCCC--------------CCCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCCCCC
Confidence 668999999999998 56655 234899999999864 55443 234789999999988633
Q ss_pred cccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccc
Q 014100 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANL 253 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L 253 (430)
...+ .++|+.|++++|.+.+..+ ... +.+++|+.|+++++ .++.++.. ..+++|
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L 193 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNF--------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKL 193 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEG--------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTC
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcCh--------------HHHhhhCCcccEEecCCC-cccccccc-----ccCCCC
Confidence 3222 4689999999998776431 122 25789999999985 67776433 458899
Q ss_pred cEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccc
Q 014100 254 IRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 254 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
+.|+++++ .++.+|+.+..+++|+.|+++++. +..+|. .+..+++|+.|++++++..
T Consensus 194 ~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 194 KTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred CEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccccch--hhccCCCCCEEEcCCCCCc
Confidence 99999986 566777778889999999999864 666665 3567899999999887644
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1e-16 Score=164.32 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=179.7
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
...+++|+++.+.+.... ......++.....+++|++|++++|. +..+.... ..+++|++|+++.+....
T Consensus 188 ~~~~~~L~~L~L~~n~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~----~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFA-----KISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF----KAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp HHHCCCCCEEECTTCCCS-----SCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH----HHCTTCCEEEECBCCCCT
T ss_pred HhcCCCccEEEeeccCCC-----ccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH----hhhhHHHhhccccccccc
Confidence 345788999988442211 01123444445667889999998875 43322222 467888888887532221
Q ss_pred cC-CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEE
Q 014100 94 SA-IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172 (430)
Q Consensus 94 ~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 172 (430)
.. .....+..+++|+.|+++++. ...+ |. +...+++|++|++++|. +........ +..+++|++|+
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~-~~~l---------~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~ 324 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMG-PNEM---------PI-LFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLE 324 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCC-TTTG---------GG-GGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEE
T ss_pred chHHHHHHhhccccccccCccccc-hhHH---------HH-HHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEe
Confidence 10 111124567788888877642 1111 22 23567788888888775 332211111 45678888888
Q ss_pred EecCCCccccc-----CCcceEEEecC----------CC-CCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 173 IENCPDMETFI-----SNSVVHVTTDN----------KE-PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 173 l~~c~~l~~~~-----~~~L~~L~l~~----------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
+.++-.-..++ +++|++|++++ +. +.... +......+++|++|++ .|+++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-------------LIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-------------HHHHHHHCTTCSEEEE-EESCC
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-------------HHHHHhhCccCeEEEe-ecCCc
Confidence 87432111111 56788888874 33 22110 0001234678888888 44566
Q ss_pred eeecccCchhhhhcccccEEeecc---Cccccccc------CCcccCCCCCEEEEccCCC-ccccccccccccccCccEE
Q 014100 237 QHLWKENDESNKAFANLIRLKISE---CSKLQKLV------TPSWHLENLATLEVSKCHG-LINVLTLSTSESLVNLGRM 306 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~---c~~l~~l~------~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L 306 (430)
+......+ ...+++|+.|++++ |..++..| ..+..+++|+.|+++.|.+ +.+.....+...+++|++|
T Consensus 391 ~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 391 TNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred cHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 55332222 13477888888874 44555432 1244578888888877654 3332222233457888888
Q ss_pred EEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC--CCcCCCC
Q 014100 307 KIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ--GVVDAPK 384 (430)
Q Consensus 307 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~ 384 (430)
++++|. +.+.. .......+++|++|++++|+ +++.........+++|++|++++|. ++.... -...+|.
T Consensus 469 ~L~~n~-l~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 469 LLGYVG-ESDEG------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY 539 (592)
T ss_dssp EECSCC-SSHHH------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT
T ss_pred eccCCC-CCHHH------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC
Confidence 888775 33211 00011236788888888886 5432111122347888888888886 433211 1234566
Q ss_pred ceEEec
Q 014100 385 LNKVKP 390 (430)
Q Consensus 385 L~~l~l 390 (430)
++...+
T Consensus 540 l~~~~~ 545 (592)
T 3ogk_B 540 WNIELI 545 (592)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 655544
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.2e-14 Score=131.22 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=96.5
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+|++|+++++ .+..+++.. +.++++|++|++++|..+..+ +...+..+++|++|++++|..++.++...
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i---------~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQL---------ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEE---------CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCccee---------CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 6777777765 455544322 556777777777776445555 33334566677777776644555554221
Q ss_pred ccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc---EEecccCCCc
Q 014100 160 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHKV 236 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~---~L~L~~~~~l 236 (430)
...+++|++|+++++. ++.+ + ..+.+++|+ .|++++++.+
T Consensus 101 --f~~l~~L~~L~l~~n~-l~~l------------------p----------------~~~~l~~L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 101 --LKELPLLKFLGIFNTG-LKMF------------------P----------------DLTKVYSTDIFFILEITDNPYM 143 (239)
T ss_dssp --EECCTTCCEEEEEEEC-CCSC------------------C----------------CCTTCCBCCSEEEEEEESCTTC
T ss_pred --hCCCCCCCEEeCCCCC-Cccc------------------c----------------ccccccccccccEEECCCCcch
Confidence 3455666666665553 2211 1 123344554 7777775466
Q ss_pred eeecccCchhhhhccccc-EEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc-cCccEEEEcc
Q 014100 237 QHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIAD 310 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 310 (430)
+.++...+ ..+++|+ .|+++++ .++.+|......++|+.|+++++..++.++.. .+..+ ++|++|++++
T Consensus 144 ~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 144 TSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTT
T ss_pred hhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCC
Confidence 66665555 6667777 7777664 34455544333355666666655444444332 12334 4455555544
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2e-14 Score=137.51 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=135.5
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.+++++|+++++ ++..+++ ..+.++++|++|++++|...+.+ +.+.+..++++.++.+.++..+..++.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i---------~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEE---------CTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCcc---------ChhHhhcchhhhhhhcccCCcccccCc
Confidence 356777777776 4565443 23667777777777777555555 444456667766655555556666643
Q ss_pred CcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.. ...+++|++|++.++. ++.++.. ......++..|++.++..+.
T Consensus 98 ~~--f~~l~~L~~L~l~~n~-l~~~~~~--------------------------------~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 98 EA--FQNLPNLQYLLISNTG-IKHLPDV--------------------------------HKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp TS--BCCCTTCCEEEEEEEC-CSSCCCC--------------------------------TTCCBSSCEEEEEESCTTCC
T ss_pred hh--hhhccccccccccccc-cccCCch--------------------------------hhcccchhhhhhhccccccc
Confidence 31 4566777777776654 2222210 01223456666666666666
Q ss_pred eecccCchhhhhc-ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchh
Q 014100 238 HLWKENDESNKAF-ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.++...+ ..+ ..++.|+++++ .++.+++......+|+.+.+.+++.++.++.. .+..+++|++|+++++ .++.
T Consensus 143 ~l~~~~f---~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 143 TIERNSF---VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp EECTTSS---TTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCC
T ss_pred cccccch---hhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCc
Confidence 6655544 333 35667777663 55666665555566777777777777776643 2456777777777765 4444
Q ss_pred hhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 014100 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+.. ..+.+|+.|++.++.+++.++. ...+++|+.+++.+
T Consensus 217 lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred cCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 431 1266777777777777777763 23477777777754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=1.6e-13 Score=127.54 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccc
Q 014100 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 126 (430)
+..++++++++++++. ++.++.+ -.++++.|+++++ .+....+. .+.++++|++|++++| .+..+.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~------~~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~---- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPD------LPKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQ---- 71 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSC------CCTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEE----
T ss_pred ccccCCccEEECCCCC-CCcCCCC------CCCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCccc----
Confidence 3456667777776544 5543322 2357777777776 34443332 3666777777777776 455541
Q ss_pred ccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.. ..+++|++|+++++ .+..++.. ...+++|++|+++++.
T Consensus 72 -----~~--~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 72 -----VD--GTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNR 111 (290)
T ss_dssp -----CC--SCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSC
T ss_pred -----CC--CCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCc
Confidence 11 45677777777764 45555443 4556666666666654
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.6e-15 Score=144.09 Aligned_cols=234 Identities=14% Similarity=0.182 Sum_probs=126.4
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++++.|+++++. +...+... ..+++|++|++++|. +........+.++++|++|++++|. +....
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~-------- 134 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI-------- 134 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--------
Confidence 556666666544 33222221 345666666666653 3321112235566666666666663 22110
Q ss_pred cCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+..+ ..+++|++|++++|..++. ++.. +..+++|++|++++|..++... +.
T Consensus 135 ~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~----------------~~------- 187 (336)
T 2ast_B 135 VNTL-AKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKH----------------VQ------- 187 (336)
T ss_dssp HHHH-TTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHH----------------HH-------
T ss_pred HHHH-hcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHH----------------HH-------
Confidence 1111 3456666666666544432 2111 3445566666665553333210 00
Q ss_pred ccCccccCCcCCCCC-CCcEEecccCC-Cceee-cccCchhhhhcccccEEeeccCcccc-cccCCcccCCCCCEEEEcc
Q 014100 209 TDQIQPLFDEKVAFP-QLRYLELSRLH-KVQHL-WKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~L~~L~L~~~~-~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~ 284 (430)
.....++ +|++|++++|. .+++. .+..+ ..+++|+.|++++|..++ ..+..+..+++|+.|++++
T Consensus 188 --------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 188 --------VAVAHVSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp --------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred --------HHHHhcccCCCEEEeCCCcccCCHHHHHHHH---hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 1134567 88888888864 34321 11122 677889999998887444 4455667888999999998
Q ss_pred CCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceee-cccceeecccCCCCceecC
Q 014100 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 285 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~ 351 (430)
|..+.+.... .+..+++|++|++++| +.+.. ...+ ..++.|++. ++.++....
T Consensus 257 ~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~----------~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 257 CYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGT----------LQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp CTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTC----------HHHHHHHSTTSEES-CCCSCCTTC
T ss_pred CCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHH----------HHHHHhhCcceEEe-cccCccccC
Confidence 8755433221 2466899999999888 22211 0112 347777775 456665443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2.9e-13 Score=124.86 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=126.3
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+.++|..+. ++|++|+++++. +..+... ....+++|++|++++| .+..+++.. +.++++|++|++++| .+
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 88 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSY---SFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PI 88 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTT---TTTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CC
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHh---HhccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCC-cc
Confidence 3455655442 468888887765 5544321 1256777888888776 455544322 567778888888777 45
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|++.++. +..++.. .+..+++|++|+++++. +.
T Consensus 89 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-------------------l~ 137 (276)
T 2z62_A 89 QSL---------ALGAFSGLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHNL-------------------IQ 137 (276)
T ss_dssp CEE---------CTTTTTTCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSSC-------------------CC
T ss_pred Ccc---------ChhhhcCCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCCc-------------------cc
Confidence 554 33334667777777777653 3333221 14456666666666554 22
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccccc----EEeeccCcccccccCCcccC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHL 274 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l 274 (430)
+.. +....+.+++|+.|+++++ .++.+....+ ..+++|+ +|+++++ .+..+++.....
T Consensus 138 ~~~-------------l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~ 199 (276)
T 2z62_A 138 SFK-------------LPEYFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE 199 (276)
T ss_dssp CCC-------------CCGGGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred eec-------------CchhhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCC
Confidence 110 0022455678888888874 6777665555 5555555 7777775 455565555555
Q ss_pred CCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
.+|+.|+++++. ++.++.. .+..+++|+.|+++++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSS
T ss_pred CcccEEECCCCc-eeecCHh-HhcccccccEEEccCC
Confidence 578888887764 5555442 2456777888887753
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=1.5e-13 Score=128.91 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=50.6
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..+++ +..+++|+.|++++|. +..++. +.
T Consensus 147 l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~---l~ 214 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSP---LA 214 (308)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGG---GT
T ss_pred ccCCCCccEEEccCC-cCCCChh--h---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCcccc---cc
Confidence 345667777777764 5555433 3 66677777777765 3444443 5567777777777653 444442 45
Q ss_pred cccCccEEEEcccc
Q 014100 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|+.|++++++
T Consensus 215 ~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 215 NTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCe
Confidence 67777777777654
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=5.3e-13 Score=122.76 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCcccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
.+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .+..+++ .+..+++|+.|+++++ .++.++.. .+..
T Consensus 131 ~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~ 203 (270)
T 2o6q_A 131 SLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDS 203 (270)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTT
T ss_pred cCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-Hhcc
Confidence 4455555555553 4444443333 44555555555554 2333332 2344555666666554 34443322 2344
Q ss_pred ccCccEEEEccc
Q 014100 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|+.|+++++
T Consensus 204 l~~L~~L~l~~N 215 (270)
T 2o6q_A 204 LEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEecCC
Confidence 556666666543
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1.8e-13 Score=128.51 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..+. +. ..+++|++|++++| .+...++ +.++++|++|++++|. +..+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~------- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV------- 100 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC-------
T ss_pred HcCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc-------
Confidence 46788888888775 55432 22 56888888888887 5565444 6678888888888873 5444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
+ . +..+++|++|+++++. ++.++. +..+++|++|++++|. ++.++ .++|++|++++|.+.+..
T Consensus 101 --~-~-~~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~--- 167 (308)
T 1h6u_A 101 --S-A-IAGLQSIKTLDLTSTQ-ITDVTP----LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT--- 167 (308)
T ss_dssp --G-G-GTTCTTCCEEECTTSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred --h-h-hcCCCCCCEEECCCCC-CCCchh----hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCCh---
Confidence 1 1 3677888888888763 555542 6778888888888875 44443 568888999888876644
Q ss_pred cceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc
Q 014100 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 284 (430)
....+++|+.|+++++ .++.+.+ + ..+++|+.|++++| .+..+++ +..+++|+.|++++
T Consensus 168 -------------~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 168 -------------PLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN 226 (308)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred -------------hhcCCCCCCEEECCCC-ccCcChh--h---cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccC
Confidence 2567889999999985 6776543 3 78899999999997 4555553 67899999999998
Q ss_pred CC
Q 014100 285 CH 286 (430)
Q Consensus 285 c~ 286 (430)
++
T Consensus 227 N~ 228 (308)
T 1h6u_A 227 QT 228 (308)
T ss_dssp EE
T ss_pred Ce
Confidence 65
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=2.2e-16 Score=156.75 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=199.5
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeec-cCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIW-HGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.++|+++.+.+... .+..... .+..+++|++|++++|. +.... ...+.....+++|++|+++++ .+...
T Consensus 2 ~~~l~~L~Ls~~~l-----~~~~~~~---~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEEL-----SDARWAE---LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDV 71 (461)
T ss_dssp CEEEEEEEEESCCC-----CHHHHHH---HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHH
T ss_pred Cccceehhhhhccc-----CchhHHH---HHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChH
Confidence 36678888844321 1111222 24567889999999887 54210 000001145799999999987 45443
Q ss_pred CchhHHhhcC----CCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc---cccCCCCc
Q 014100 96 IPANLIRCLN----NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE---NIIEMPEL 168 (430)
Q Consensus 96 ~~~~~~~~l~----~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~l~~L 168 (430)
.+..+...++ +|++|++++|. +... +....+.. +..+++|++|+++++. +++...... .....++|
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~----~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCC-LTGA----GCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSC-CBGG----GHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHhhCCCceeEEEccCCC-CCHH----HHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcc
Confidence 3444455676 79999999984 4321 11111222 3678899999999875 433211100 01235689
Q ss_pred cEEEEecCCCcccc-----c-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCce
Q 014100 169 RYLAIENCPDMETF-----I-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 169 ~~L~l~~c~~l~~~-----~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~ 237 (430)
++|++++|. ++.. + .++|++|++++|.+..... ..+.... ...++|++|++++| .++
T Consensus 145 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~----------~~l~~~l~~~~~~L~~L~L~~n-~l~ 212 (461)
T 1z7x_W 145 EKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGV----------RVLCQGLKDSPCQLEALKLESC-GVT 212 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH----------HHHHHHHHHSCCCCCEEECTTS-CCB
T ss_pred eEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH----------HHHHHHHhcCCCCceEEEccCC-CCc
Confidence 999999985 4432 1 4789999999988653210 0000001 13569999999986 555
Q ss_pred eecccCc-hhhhhcccccEEeeccCccccc----ccCC-cccCCCCCEEEEccCCCcccccc---ccccccccCccEEEE
Q 014100 238 HLWKEND-ESNKAFANLIRLKISECSKLQK----LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKI 308 (430)
Q Consensus 238 ~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~----l~~~-~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l 308 (430)
......+ .....+++|++|++++|..-.. +.+. ...+++|+.|++++| .++.... ...+..+++|++|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEEC
Confidence 4211111 1125679999999999843221 2121 225789999999998 4554211 112456899999999
Q ss_pred cccccchhhhcccccccCCcc-eeecccceeecccCCCCceecC---CCcccCCCCccEEEeccCCCCccc-cC----CC
Q 014100 309 ADCKMIEQIIQLQVGEEAKGC-VVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIF-SQ----GV 379 (430)
Q Consensus 309 ~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l-~~----~~ 379 (430)
+++. +.+..... ..... ...++|+.|++.+|. ++.... ......+++|++|++++| .++.. +. ..
T Consensus 292 s~n~-i~~~~~~~---l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 292 AGNE-LGDEGARL---LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGL 365 (461)
T ss_dssp TTCC-CHHHHHHH---HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH
T ss_pred CCCC-CchHHHHH---HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHH
Confidence 9874 43321100 00000 113689999999985 443211 012234789999999988 44432 11 11
Q ss_pred c-CCCCceEEecccCCC
Q 014100 380 V-DAPKLNKVKPTEEED 395 (430)
Q Consensus 380 ~-~~~~L~~l~l~~~~~ 395 (430)
. ..++|++++++++..
T Consensus 366 ~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDV 382 (461)
T ss_dssp TSTTCCCCEEECTTSCC
T ss_pred cCCCCceEEEECCCCCC
Confidence 1 267999999988753
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=3.3e-15 Score=140.60 Aligned_cols=108 Identities=18% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
+.+++|++|+++++ .++.++.........+++|+.|+++++......| +....+++|+.|+++++. ++.+|.. +.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG--LP 273 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS--CC
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh--cc
Confidence 45667777777764 4543221111111345677777777754333232 233456677777777653 4555432 11
Q ss_pred cccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|++|+++++ .++.+. . ...+++|+.|++.+.
T Consensus 274 --~~L~~L~Ls~N-~l~~~p--------~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 --AKLSVLDLSYN-RLDRNP--------S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp --SEEEEEECCSS-CCCSCC--------C-TTTSCEEEEEECTTC
T ss_pred --CCceEEECCCC-CCCCCh--------h-HhhCCCCCEEeccCC
Confidence 67777777765 333331 1 223677777777764
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=3.9e-13 Score=123.62 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=106.7
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+..+|..+. ++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++| .+
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n-~l 97 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSK---AFHRLTKLRLLYLNDN-KLQTLPA-GIFKELKNLETLWVTDN-KL 97 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CSCCCTT---SSSSCTTCCEEECCSS-CCSCCCT-TTTSSCTTCCEEECCSS-CC
T ss_pred CCCccCCCCC--CCCCEEECcCCC-CCeeCHH---HhcCCCCCCEEECCCC-ccCeeCh-hhhcCCCCCCEEECCCC-cC
Confidence 3444444332 456666666554 4432211 1244566666666665 3444322 22455666666666665 33
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++ .++.++... +..+++|++|++++ |.+.
T Consensus 98 ~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~-------------------n~l~ 146 (270)
T 2o6q_A 98 QAL---------PIGVFDQLVNLAELRLDRN-QLKSLPPRV--FDSLTKLTYLSLGY-------------------NELQ 146 (270)
T ss_dssp CCC---------CTTTTTTCSSCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCS-------------------SCCC
T ss_pred CcC---------CHhHcccccCCCEEECCCC-ccCeeCHHH--hCcCcCCCEEECCC-------------------CcCC
Confidence 333 3333455566666666653 233332211 23445555555554 4433
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENL 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 277 (430)
++.. .....+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|
T Consensus 147 ~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 147 SLPK--------------GVFDKLTSLKELRLYNN-QLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ccCH--------------hHccCCcccceeEecCC-cCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCC
Confidence 3220 12356789999999884 6777766655 77889999999887 55566553 5678899
Q ss_pred CEEEEccCC
Q 014100 278 ATLEVSKCH 286 (430)
Q Consensus 278 ~~L~l~~c~ 286 (430)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998865
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=3.7e-13 Score=124.17 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=135.4
Q ss_pred cceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ ..+.+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+...+
T Consensus 28 ~~l~~L~l----------s~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDL----------SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLA 92 (276)
T ss_dssp TTCCEEEC----------TTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEEC
T ss_pred CCccEEEC----------CCCcccccCHhHhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCC-ccCccC
Confidence 46999998 3455556654 57789999999999885 66544322 267899999999997 566655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEe
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIE 174 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~ 174 (430)
+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++. +.. ++.. +..+++|++|+++
T Consensus 93 ~~~-~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~---~~~l~~L~~L~Ls 157 (276)
T 2z62_A 93 LGA-FSGLSSLQKLVAVET-NLASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLS 157 (276)
T ss_dssp TTT-TTTCTTCCEEECTTS-CCCCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECC
T ss_pred hhh-hcCCccccEEECCCC-Ccccc---------CchhcccCCCCCEEECcCCc-cceecCchh---hccCCCCCEEECC
Confidence 433 778999999999998 44444 23224788999999999864 444 2333 6778888888888
Q ss_pred cCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc-EEecccCCCceeecccCchhhhhcccc
Q 014100 175 NCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANL 253 (430)
Q Consensus 175 ~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~~~~~l~~L 253 (430)
+|. ++.+++..+ .....++.+. +|++++ +.++.++...+ ...+|
T Consensus 158 ~N~-l~~~~~~~~-----------------------------~~l~~L~~l~l~L~ls~-n~l~~~~~~~~----~~~~L 202 (276)
T 2z62_A 158 SNK-IQSIYCTDL-----------------------------RVLHQMPLLNLSLDLSL-NPMNFIQPGAF----KEIRL 202 (276)
T ss_dssp SSC-CCEECGGGG-----------------------------HHHHTCTTCCEEEECCS-SCCCEECTTSS----CSCCE
T ss_pred CCC-CCcCCHHHh-----------------------------hhhhhccccceeeecCC-CcccccCcccc----CCCcc
Confidence 875 333322111 1111222333 677776 46666655443 23478
Q ss_pred cEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 254 IRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 254 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
+.|+++++. ++.+++. +..+++|+.|++++++
T Consensus 203 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 888888764 5566554 4578888888888754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.6e-13 Score=126.41 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
+.+++|+.|+++++ .++.+++..+ ..+++|+.|++++|. +..+++ .+..+++|+.|+++++
T Consensus 154 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 154 DKLTNLTELDLSYN-QLQSLPEGVF---DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCccCCEEECCCC-CcCccCHHHh---cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 34556666666653 4554444333 455566666665543 333332 2345555666655554
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=7.3e-13 Score=124.52 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=119.1
Q ss_pred CCCCccEEEeecCcCCCcCCchhH-HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccc-----cccceeeccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-----PKLFELTLMDLP 150 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 150 (430)
.+++|++|++++| .+....|..+ +..+++|++|++++| .+..+ |..+ ..+ ++|++|+++++.
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~~-~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATR---------DAWL-AELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS---------SSHH-HHHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcch---------hHHH-HHHHHhhcCCCcEEEeeCCC
Confidence 4677777777776 3443334332 256777777777776 33332 1111 233 677777777653
Q ss_pred cccccccCcccccCCCCccEEEEecCCCccc---------ccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCC
Q 014100 151 KLKRFCNFTENIIEMPELRYLAIENCPDMET---------FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVA 221 (430)
Q Consensus 151 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 221 (430)
+..++.. .+..+++|++|+++++..... -..++|++|++++|.+.+...+. ......
T Consensus 161 -l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------~~~~~~ 226 (312)
T 1wwl_A 161 -SLNFSCE--QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC-----------SALAAA 226 (312)
T ss_dssp -CCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-----------HHHHHT
T ss_pred -CccchHH--HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH-----------HHHHhc
Confidence 4444321 155677777777777663322 11456777777777765322000 001134
Q ss_pred CCCCcEEecccCCCceeecc-cCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+++|+.|+++++ .++...+ ..+ ..+++|+.|+++++ .++.+|..+. ++|+.|+++++ .++.+|. ...+
T Consensus 227 l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l 295 (312)
T 1wwl_A 227 RVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDEL 295 (312)
T ss_dssp TCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTS
T ss_pred CCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhC
Confidence 678888888874 5665432 222 55688888888886 4557776554 78888888875 4666643 5678
Q ss_pred cCccEEEEcccc
Q 014100 301 VNLGRMKIADCK 312 (430)
Q Consensus 301 ~~L~~L~l~~c~ 312 (430)
++|++|++++++
T Consensus 296 ~~L~~L~L~~N~ 307 (312)
T 1wwl_A 296 PQVGNLSLKGNP 307 (312)
T ss_dssp CEEEEEECTTCT
T ss_pred CCCCEEeccCCC
Confidence 888888887753
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=5.6e-14 Score=133.38 Aligned_cols=245 Identities=14% Similarity=0.090 Sum_probs=134.1
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhc--CCCCEEEEecCCCccEeecccccc
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
..|..-++..+..+..-|.... ..-..++.++++++. +. + ..+..+ +++++|++++|. +...
T Consensus 22 ~~L~~~d~~~~~~vc~~W~~~~---~~~~~~~~l~l~~~~-~~---~-~~~~~~~~~~l~~L~l~~n~-l~~~------- 85 (336)
T 2ast_B 22 SCLCLPELLKVSGVCKRWYRLA---SDESLWQTLDLTGKN-LH---P-DVTGRLLSQGVIAFRCPRSF-MDQP------- 85 (336)
T ss_dssp TTSCHHHHHHTTSSCHHHHHHH---TCSTTSSEEECTTCB-CC---H-HHHHHHHHTTCSEEECTTCE-ECSC-------
T ss_pred HhCCHHHHHHHHHHHHHHHHHh---cCchhheeecccccc-CC---H-HHHHhhhhccceEEEcCCcc-cccc-------
Confidence 3343344445554444455441 112347788888752 22 2 235556 889999988873 3322
Q ss_pred CCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCccc-cc-----CCcceEEEecCCC-CCc
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMET-FI-----SNSVVHVTTDNKE-PEK 199 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~-----~~~L~~L~l~~~~-~~~ 199 (430)
+..+ ..+++|++|+++++. +.. ++.. ...+++|++|++++|. ++. .+ .++|++|++++|. +.+
T Consensus 86 --~~~~-~~~~~L~~L~L~~~~-l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 86 --LAEH-FSPFRVQHMDLSNSV-IEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp --CCSC-CCCBCCCEEECTTCE-ECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred --chhh-ccCCCCCEEEccCCC-cCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 2222 567889999998875 332 3222 5678888888888875 332 21 4566666666662 332
Q ss_pred ccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec-ccCchhhhhcc-cccEEeeccCc-cc--ccccCCcccC
Q 014100 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHL 274 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~~~~l 274 (430)
.. +......+++|++|++++|..++... +..+ ..++ +|++|++++|. .+ ..++..+..+
T Consensus 158 ~~-------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 158 FA-------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp HH-------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred HH-------------HHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---HhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 10 00113346677777777764555421 1112 5566 77777777764 23 2344444566
Q ss_pred CCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|+.|++++|..+++.... .+..+++|++|++++|..+.+... .....+++|+.|++.+|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 77777777776644432211 245567777777777653322210 01122667777777766
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.44 E-value=3.2e-12 Score=118.82 Aligned_cols=194 Identities=15% Similarity=0.074 Sum_probs=138.7
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++++.++++++ .+..+++. + .+++++|++++| .+..+ +...+..+++|+.|+++++ .++.+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~--~--~~~l~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPD--L--PKDTTILHLSEN-LLYTF---------SLATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSC--C--CTTCCEEECTTS-CCSEE---------EGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCC--C--CCCCCEEEcCCC-cCCcc---------CHHHhhcCCCCCEEECCCC-ccCcc
Confidence 46889999999986 67775543 2 368999999998 56655 2333478899999999986 46666
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEec
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLEL 230 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L 230 (430)
+. ...+++|++|+++++. ++.+| .++|++|++++|.+.++.+ .....+++|+.|++
T Consensus 71 ~~----~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~--------------~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 71 QV----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL--------------GALRGLGELQELYL 131 (290)
T ss_dssp EC----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS--------------STTTTCTTCCEEEC
T ss_pred cC----CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCH--------------HHHcCCCCCCEEEC
Confidence 44 3678999999999875 55555 4578888888888766441 22456778888888
Q ss_pred ccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc-ccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 231 SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
+++ .++.++...+ ..+++|+.|+++++ .++.+|+.. ..+++|+.|+++++ .++.++.. +...++|+.|++.
T Consensus 132 ~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~--~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 132 KGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLH 203 (290)
T ss_dssp TTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECC
T ss_pred CCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChh--hcccccCCeEEeC
Confidence 874 7777766655 67788888888875 556666543 56788888888775 46666542 4456678888887
Q ss_pred ccc
Q 014100 310 DCK 312 (430)
Q Consensus 310 ~c~ 312 (430)
+++
T Consensus 204 ~Np 206 (290)
T 1p9a_G 204 GNP 206 (290)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=3.1e-14 Score=138.01 Aligned_cols=269 Identities=12% Similarity=0.071 Sum_probs=140.4
Q ss_pred ecccccccCccchhhhhhhhcccCCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecC--cCCCcCCchhH--
Q 014100 26 KGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANL-- 100 (430)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~-- 100 (430)
.+..+.+.+-....+..++..+..+++|++|+++++. +... ....+.....+++|++|++++| ..+....|..+
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 3444455544557788888888889999999999885 4421 1000001256899999999987 23333334332
Q ss_pred ----HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc--cccCC---------
Q 014100 101 ----IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE--NIIEM--------- 165 (430)
Q Consensus 101 ----~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~l--------- 165 (430)
+..+++|++|++++|. +... +....+.. +..+++|++|++++|. ++....... .+..+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNA-FGPT----AQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNA 158 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCC-CCTT----THHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhCCcccEEECCCCc-CCHH----HHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccC
Confidence 3678999999999884 3221 00111222 2567888888888764 322110000 01122
Q ss_pred CCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee-----ec
Q 014100 166 PELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-----LW 240 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-----~~ 240 (430)
++|++|++++|. ++... .. .+...+..+++|++|+++++ .++. +.
T Consensus 159 ~~L~~L~L~~n~-l~~~~----------------~~------------~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~ 208 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGS----------------MK------------EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLL 208 (386)
T ss_dssp CCCCEEECCSSC-CTGGG----------------HH------------HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHH----------------HH------------HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHH
Confidence 666666666654 21100 00 00011233456666666664 3431 11
Q ss_pred ccCchhhhhcccccEEeeccCccc----ccccCCcccCCCCCEEEEccCCCccccccc---ccc--ccccCccEEEEccc
Q 014100 241 KENDESNKAFANLIRLKISECSKL----QKLVTPSWHLENLATLEVSKCHGLINVLTL---STS--ESLVNLGRMKIADC 311 (430)
Q Consensus 241 ~~~~~~~~~l~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~--~~l~~L~~L~l~~c 311 (430)
+..+ ..+++|+.|++++|..- ..++..+..+++|+.|++++|. +...... ..+ ..+++|+.|++++|
T Consensus 209 ~~~l---~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 209 LEGL---AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HTTG---GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHh---hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 1122 45566666666665432 3444455566677777776654 3322100 011 22667777777665
Q ss_pred ccchh----hhcccccccCCcc-eeecccceeecccCC
Q 014100 312 KMIEQ----IIQLQVGEEAKGC-VVFEELGYLGLDCLP 344 (430)
Q Consensus 312 ~~l~~----~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 344 (430)
.--.. +. ... ..+++|+.|++.+++
T Consensus 285 ~i~~~g~~~l~--------~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 285 EIELDAVRTLK--------TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCBHHHHHHHH--------HHHHHHCTTCCEEECTTSB
T ss_pred cCCHHHHHHHH--------HHHHhcCCCceEEEccCCc
Confidence 42221 21 111 125677777777653
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=7.6e-13 Score=121.86 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=126.1
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
..+++|++|+++++. +..+ .+. ..+++|++|++++| .+... + .+..+++|++|++++| .+..+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~-~~l----~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~n-~l~~~------ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV-QGI----QYLPNVRYLALGGN-KLHDI-S--ALKELTNLTYLILTGN-QLQSL------ 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECTTS-CCCCC-G--GGTTCTTCCEEECTTS-CCCCC------
T ss_pred ccccceeeeeeCCCC-cccc-ccc----ccCCCCcEEECCCC-CCCCc-h--hhcCCCCCCEEECCCC-ccCcc------
Confidence 346777888877665 4432 122 46778888888876 34442 3 2667788888888877 45444
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCccc
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~ 201 (430)
+...+..+++|++|+++++. +..++... +..+++|++|++++|. ++.++ .++|+.|++++|.+.+..
T Consensus 101 ---~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 101 ---PNGVFDKLTNLKELVLVENQ-LQSLPDGV--FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp ---CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ---ChhHhcCCcCCCEEECCCCc-CCccCHHH--hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccC
Confidence 34444677788888887753 44443321 4567788888887774 44443 357888888888766544
Q ss_pred CCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEE
Q 014100 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE 281 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 281 (430)
+ ...+.+++|+.|+++++ .++.+++..+ ..+++|+.|++++++.. +.+++|+.|+
T Consensus 174 ~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~~-------~~~~~l~~l~ 228 (272)
T 3rfs_A 174 E--------------GVFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPWD-------CTCPGIRYLS 228 (272)
T ss_dssp T--------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCBC-------CCTTTTHHHH
T ss_pred H--------------HHhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCcc-------ccCcHHHHHH
Confidence 1 12456789999999885 6777766555 77889999999887433 3455677776
Q ss_pred EccCCCccccc
Q 014100 282 VSKCHGLINVL 292 (430)
Q Consensus 282 l~~c~~l~~~~ 292 (430)
+..+.....+|
T Consensus 229 ~~~n~~~g~ip 239 (272)
T 3rfs_A 229 EWINKHSGVVR 239 (272)
T ss_dssp HHHHHTGGGBB
T ss_pred HHHHhCCCccc
Confidence 66544333333
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=3.1e-12 Score=116.27 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 286 (430)
.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|++++++
T Consensus 129 ~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTN-QLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCC-cCCccCHHHc---CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3556666666553 5555544444 55566666666664 3333333 34556667777776653
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=7.4e-12 Score=117.50 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc---hhHHhhcCCCCEEEEecCCCccEeeccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 125 (430)
.+++|++|+++++. +....... .....+++|++|+++++. +....+ ...+..+++|++|++++| .+..+
T Consensus 89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~---- 160 (310)
T 4glp_A 89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQA-HSPAF---- 160 (310)
T ss_dssp HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCC----
T ss_pred ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCC-Ccchh----
Confidence 34668888888775 33211111 000457788888888873 443222 111346788888888887 44444
Q ss_pred cccCCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCC
Q 014100 126 ELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 126 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~ 203 (430)
+...+..+++|++|+++++...+. ++.... ...+++|++|++++|. ++.++. ..
T Consensus 161 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~---------------~~-- 216 (310)
T 4glp_A 161 -----SCEQVRAFPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRNTG-METPTG---------------VC-- 216 (310)
T ss_dssp -----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCSSC-CCCHHH---------------HH--
T ss_pred -----hHHHhccCCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCCCC-CCchHH---------------HH--
Confidence 333346778888888887643321 211111 3466777777777764 332210 00
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEc
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 283 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 283 (430)
....+.+++|++|+++++ .++...+..+..+..+++|++|+++++ .++.+|..+. ++|+.|+++
T Consensus 217 ------------~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 217 ------------AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp ------------HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECC
T ss_pred ------------HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECC
Confidence 000123455566666552 444442222211122256666666654 3445554432 566777776
Q ss_pred cCCCccccccccccccccCccEEEEccc
Q 014100 284 KCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 284 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
++. ++.++. ...+++|+.|+++++
T Consensus 281 ~N~-l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 281 SNR-LNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCC-CCSCCC---TTSCCCCSCEECSST
T ss_pred CCc-CCCCch---hhhCCCccEEECcCC
Confidence 543 444432 345667777777664
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=1.4e-11 Score=111.85 Aligned_cols=83 Identities=23% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|+++++ .+..++.. .+..+
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 178 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRL 178 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTC
T ss_pred cCCCCEEEcCCC-cCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCC
Confidence 344455555442 4444433333 44455555555553 3333333 2344555555555543 23333321 13344
Q ss_pred cCccEEEEccc
Q 014100 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|+.|+++++
T Consensus 179 ~~L~~L~l~~N 189 (251)
T 3m19_A 179 GKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEEeeCC
Confidence 55555555443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=1.5e-13 Score=133.16 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=148.6
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCC-------CCCCCC
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQAL-------PVSFFN 79 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~-------~~~~~~ 79 (430)
++.++..+..+++|+++.+.+... .......+...+..+++|++|+++++. +..+....+. ....++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcCCCccEEECCCCCC-----CHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCC
Confidence 445556666788999999844311 113344566667889999999999874 2211111000 014689
Q ss_pred CccEEEeecCcCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccc---------cccceeecc
Q 014100 80 NLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF---------PKLFELTLM 147 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~ 147 (430)
+|++|++++| .+.... ....+..+++|++|++++|. +.... ....+.. ...+ ++|++|+++
T Consensus 95 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~----~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 95 KLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQA----GAKIARA-LQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHH----HHHHHHH-HHHHHHHHHHHTCCCCCEEECC
T ss_pred cccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHH----HHHHHHH-HHHHhhhhhcccCCCCcEEECC
Confidence 9999999998 455421 11236789999999999984 43220 0000011 1233 899999999
Q ss_pred cccccc--ccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCC-cCCCCCC
Q 014100 148 DLPKLK--RFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFD-EKVAFPQ 224 (430)
Q Consensus 148 ~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 224 (430)
++. ++ .++.....+..+++|++|++++|. ++.... ..+.. ....+++
T Consensus 168 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~----------------------------~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 168 RNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGI----------------------------EHLLLEGLAYCQE 217 (386)
T ss_dssp SSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHH----------------------------HHHHHTTGGGCTT
T ss_pred CCC-CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHH----------------------------HHHHHHHhhcCCC
Confidence 874 33 222110114567888888888875 321000 00001 2345677
Q ss_pred CcEEecccCCCceee----cccCchhhhhcccccEEeeccCccccc----ccCCc--ccCCCCCEEEEccCCCccc----
Q 014100 225 LRYLELSRLHKVQHL----WKENDESNKAFANLIRLKISECSKLQK----LVTPS--WHLENLATLEVSKCHGLIN---- 290 (430)
Q Consensus 225 L~~L~L~~~~~l~~~----~~~~~~~~~~l~~L~~L~l~~c~~l~~----l~~~~--~~l~~L~~L~l~~c~~l~~---- 290 (430)
|+.|+++++ .++.. .+..+ ..+++|++|++++|..-.. ++..+ ..+++|+.|++++|. +..
T Consensus 218 L~~L~Ls~n-~l~~~g~~~l~~~l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~ 292 (386)
T 2ca6_A 218 LKVLDLQDN-TFTHLGSSALAIAL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR 292 (386)
T ss_dssp CCEEECCSS-CCHHHHHHHHHHHG---GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH
T ss_pred ccEEECcCC-CCCcHHHHHHHHHH---ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHH
Confidence 778887774 44311 11222 5667788888877753322 33333 237788888888765 443
Q ss_pred -cccccccccccCccEEEEcccc
Q 014100 291 -VLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 291 -~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.. +..++++|++|++++|+
T Consensus 293 ~l~~~-l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 293 TLKTV-IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHH-HHHHCTTCCEEECTTSB
T ss_pred HHHHH-HHhcCCCceEEEccCCc
Confidence 3321 22457888888888765
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=121.12 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=135.6
Q ss_pred CCccEEEeecCcCCCcCCchh--HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCc-ccccccceeecccccccccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPAN--LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG-PLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~ 155 (430)
..++.|.+.++. +....... -...+++|++|++++|.-.... |..++ ..+++|++|+++++.--...
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTM---------PPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC---------CCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccch---------hhhhhhccCCCCCEEEeecccccchh
Confidence 345666666652 22110000 1223566888888777322222 22222 56677888887775422211
Q ss_pred ccC-cccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 156 CNF-TENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 156 ~~~-~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+.. ......+++|++|++++|.. +..+ .++|++|++++|.+.+...+ ......+.+++|++|
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGL----------MAALCPHKFPAIQNL 202 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHH----------HTTSCTTSSCCCCSC
T ss_pred hhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhh----------hHHHhhhcCCCCCEE
Confidence 100 00134577888888877763 3332 45788888888875431100 000113578899999
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccC---CCCCEEEEccCCCccccccccccccccCccE
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 305 (430)
+++++ .++.++.........+++|++|+++++..-...|+.+..+ ++|+.|+++++ .++.+|.. + .++|++
T Consensus 203 ~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--~--~~~L~~ 276 (310)
T 4glp_A 203 ALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG--L--PAKLRV 276 (310)
T ss_dssp BCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC--C--CSCCSC
T ss_pred ECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh--h--cCCCCE
Confidence 99995 6765433211112577999999999976544446666665 69999999886 46676642 2 389999
Q ss_pred EEEcccccchhhhcccccccCCcceeecccceeecccCC
Q 014100 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+++++. ++.+. ....+++|+.|++.+.+
T Consensus 277 L~Ls~N~-l~~~~---------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSNR-LNRAP---------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSCC-CCSCC---------CTTSCCCCSCEECSSTT
T ss_pred EECCCCc-CCCCc---------hhhhCCCccEEECcCCC
Confidence 9998864 44432 12237899999999864
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=2e-11 Score=113.47 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=92.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|++++| .+..++. +..+++|++|++++| .+..+ +. +..+++|+.|+++++ .++.++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~---------~~--l~~l~~L~~L~l~~n-~l~~~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LANLKNLGWLFLDEN-KVKDLS 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------GG--GTTCTTCCEEECCSS-CCCCGG
T ss_pred hcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCC---------cc--cccCCCCCEEECCCC-cCCCCh
Confidence 4666777777766 3444322 556777777777766 34333 12 256667777777664 344433
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
. +..+++|++|++++|. ++.++ ....+++|+.|+++++ .+
T Consensus 107 ~----l~~l~~L~~L~L~~n~-i~~~~----------------------------------~l~~l~~L~~L~l~~n-~l 146 (291)
T 1h6t_A 107 S----LKDLKKLKSLSLEHNG-ISDIN----------------------------------GLVHLPQLESLYLGNN-KI 146 (291)
T ss_dssp G----GTTCTTCCEEECTTSC-CCCCG----------------------------------GGGGCTTCCEEECCSS-CC
T ss_pred h----hccCCCCCEEECCCCc-CCCCh----------------------------------hhcCCCCCCEEEccCC-cC
Confidence 2 4556666666666553 22211 1234556666666653 44
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+.+ ..+ ..+++|+.|++++| .+..+++ +..+++|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 147 ~~~--~~l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 TDI--TVL---SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCC--GGG---GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred Ccc--hhh---ccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 443 122 55666666666665 3344433 556666666666665 3444432 4556677777776653
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=4e-11 Score=111.38 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=121.2
Q ss_pred HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc
Q 014100 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 180 (430)
...+++|++|++++| .+..+ + + +..+++|++|+++++ .++.++. +..+++|++|++++|. ++
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~---------~-~-~~~l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~ 103 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSV---------Q-G-IQYLPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDENK-VK 103 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCC---------T-T-GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CC
T ss_pred hhhcCcccEEEccCC-CcccC---------h-h-HhcCCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCCc-CC
Confidence 446888999999887 45444 2 2 367788888888875 3544432 5566777777776654 22
Q ss_pred cccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeecc
Q 014100 181 TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE 260 (430)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 260 (430)
+. ...+.+++|+.|+++++ .++.+ ..+ ..+++|+.|++++
T Consensus 104 ------------------~~----------------~~l~~l~~L~~L~L~~n-~i~~~--~~l---~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 104 ------------------DL----------------SSLKDLKKLKSLSLEHN-GISDI--NGL---VHLPQLESLYLGN 143 (291)
T ss_dssp ------------------CG----------------GGGTTCTTCCEEECTTS-CCCCC--GGG---GGCTTCCEEECCS
T ss_pred ------------------CC----------------hhhccCCCCCEEECCCC-cCCCC--hhh---cCCCCCCEEEccC
Confidence 21 12567889999999985 66665 233 7889999999999
Q ss_pred CcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeec
Q 014100 261 CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGL 340 (430)
Q Consensus 261 c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 340 (430)
| .+..+ +.+..+++|+.|++++| .+..++. +..+++|+.|+++++ .+.++. ....+++|+.|++
T Consensus 144 n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~---------~l~~l~~L~~L~l 207 (291)
T 1h6t_A 144 N-KITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLEL 207 (291)
T ss_dssp S-CCCCC-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEEE
T ss_pred C-cCCcc-hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCCh---------hhccCCCCCEEEC
Confidence 7 45555 46778999999999987 4666543 678999999999987 444432 2334889999999
Q ss_pred ccCC
Q 014100 341 DCLP 344 (430)
Q Consensus 341 ~~c~ 344 (430)
.+++
T Consensus 208 ~~n~ 211 (291)
T 1h6t_A 208 FSQE 211 (291)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 9863
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=4.2e-11 Score=104.49 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=38.5
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
.+++|+.|+++++ .++...+..+ ..+++|+.|++++|..++.++ .+..+++|+.|++++|. +.+++ .+..+
T Consensus 110 ~l~~L~~L~Ls~n-~i~~~~~~~l---~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l 180 (197)
T 4ezg_A 110 GLTSLTLLDISHS-AHDDSILTKI---NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDF 180 (197)
T ss_dssp TCTTCCEEECCSS-BCBGGGHHHH---TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGC
T ss_pred CCCCCCEEEecCC-ccCcHhHHHH---hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccC
Confidence 3445555555543 3332222222 444555555555554344443 34455556666665543 33333 13445
Q ss_pred cCccEEEEccc
Q 014100 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|+.|++++.
T Consensus 181 ~~L~~L~l~~N 191 (197)
T 4ezg_A 181 PKLNQLYAFSQ 191 (197)
T ss_dssp SSCCEEEECBC
T ss_pred CCCCEEEeeCc
Confidence 56666666543
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1.3e-12 Score=125.36 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=37.8
Q ss_pred ccCCCCcceeeccccccceeeccCC-CCCCCCCC-CccEEEeecCcCCCcCCchhHHhhc-----CCCCEEEEecCC
Q 014100 47 MIGFRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCL-----NNLRWLEVRNCD 116 (430)
Q Consensus 47 l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~ 116 (430)
+...++|++|+++++. +....... ......++ +|++|++++| .+....+.. +..+ ++|++|++++|.
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC
T ss_pred HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc
Confidence 3344458888888776 54322100 00013456 7888888877 455544433 3333 778888888773
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=3.6e-11 Score=104.94 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++ +. ..+++|++|++++| .+... +. +..+++|++|++++| .+....
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~~--l~~l~~L~~L~l~~n-~l~~~~------ 104 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-NP--ISGLSNLERLRIMGK-DVTSDK------ 104 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-GG--GTTCTTCCEEEEECT-TCBGGG------
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-hh--hhcCCCCCEEEeECC-ccCccc------
Confidence 34566666666554 44332 22 45666666666665 33332 21 555666666666665 232210
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+.. +..+++|++|+++++.-....+.. +..+++|++|++++|..++.++
T Consensus 105 --~~~-l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~------------------------- 153 (197)
T 4ezg_A 105 --IPN-LSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIM------------------------- 153 (197)
T ss_dssp --SCC-CTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCG-------------------------
T ss_pred --Chh-hcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccH-------------------------
Confidence 122 255666666666664322112211 4455666666666654333322
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
....+++|+.|+++++ .++.+. .+ ..+++|+.|+++++
T Consensus 154 ---------~l~~l~~L~~L~l~~n-~i~~~~--~l---~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 ---------PLKTLPELKSLNIQFD-GVHDYR--GI---EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ---------GGGGCSSCCEEECTTB-CCCCCT--TG---GGCSSCCEEEECBC
T ss_pred ---------hhcCCCCCCEEECCCC-CCcChH--Hh---ccCCCCCEEEeeCc
Confidence 2345667777777764 566654 23 66677777777664
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=4.1e-11 Score=122.37 Aligned_cols=123 Identities=15% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. . ...+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~----l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-G----IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-T----GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC-------
T ss_pred cCCCCCEEECcCCC-CCCCh-H----HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCC-------
Confidence 45667777777665 44332 1 245777777777776 4555433 556777777777776 44333
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCc
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~ 199 (430)
+ . +..+++|+.|+++++. +..++. +..+++|+.|++++|. ++.++ .++|+.|++++|.+.+
T Consensus 103 --~-~-l~~l~~L~~L~Ls~N~-l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 103 --S-S-LKDLKKLKSLSLEHNG-ISDING----LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp --T-T-STTCTTCCEEECTTSC-CCCCGG----GGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred --h-h-hccCCCCCEEEecCCC-CCCCcc----ccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCC
Confidence 1 2 2566777777777653 444321 5566777777776654 22222 3344444444444433
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=7.3e-11 Score=120.50 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+ +. +..+++|+.|+++++ .+..+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~---------~~--l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCC---------GG--GGGCTTCCEEECCSS-CCCCC
T ss_pred hcCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCC---------hh--hccCCCCCEEECcCC-CCCCC
Confidence 46889999999987 4665432 678999999999998 45544 22 378899999999986 45555
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
+. +..+++|+.|++++|. ++.++ .++|+.|++++|.+.++. .+..+++|+.|+|+
T Consensus 103 ~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~----------------~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 103 SS----LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT----------------VLSRLTKLDTLSLE 161 (605)
T ss_dssp TT----STTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCCG----------------GGGSCTTCSEEECC
T ss_pred hh----hccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCch----------------hhcccCCCCEEECc
Confidence 42 7788899999998876 33333 456666666666654432 23455666666666
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCC
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 286 (430)
++ .+..+.+ + ..+++|+.|++++| .+..++ .+..+++|+.|++++|+
T Consensus 162 ~N-~l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CC-cCCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 64 4554433 2 55666666666665 334442 34556666666666553
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.20 E-value=1.8e-10 Score=116.46 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.+|+.|+++++. +..++. .-+++|++|++++| .+..++ ..+++|++|++++| .+..+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~------~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~i--------- 115 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD------NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTL--------- 115 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS------CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCC---------
T ss_pred CCccEEEeCCCC-CCccCH------hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCc---------
Confidence 378899998775 554332 23578999999887 566544 24788999999888 55544
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCc
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~ 199 (430)
|. + .. +|+.|+++++ .++.+|. .+++|+.|++++|. ++.+| +++|++|++++|.+.+
T Consensus 116 p~-l-~~--~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 116 PE-L-PA--SLKHLDVDNN-QLTMLPE------LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CC-C-CT--TCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSC
T ss_pred ch-h-hc--CCCEEECCCC-cCCCCCC------cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCC
Confidence 33 2 22 8888888875 4554532 46777777777765 44444 3456666666665544
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=5.8e-12 Score=120.89 Aligned_cols=239 Identities=11% Similarity=0.004 Sum_probs=115.3
Q ss_pred CCccEEEeecCcCCCcCCch---hHHhhcC-CCCEEEEecCCCccEeeccccccCCcCCCccc-----ccccceeecccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPL-----FPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-----l~~L~~L~l~~~ 149 (430)
++|++|++++| .+....+. ..+.+++ +|++|++++| .+..... .. +.. +++|++|+++++
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~--------~~-l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS--------DE-LVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH--------HH-HHHHHHTSCTTCCEEECCSS
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH--------HH-HHHHHhccCCCccEEECcCC
Confidence 44777777776 35554431 2245566 6777777776 3332210 00 112 266777777765
Q ss_pred ccccccccCcc--cccCC-CCccEEEEecCCCccccc-----------CCcceEEEecCCCCCcccCCCcceeccCcccc
Q 014100 150 PKLKRFCNFTE--NIIEM-PELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPL 215 (430)
Q Consensus 150 ~~l~~~~~~~~--~~~~l-~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 215 (430)
. ++....... .+..+ ++|++|++++|. ++..+ +.+|++|++++|.+.... ...+
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----------~~~l 158 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS----------SDEL 158 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC----------HHHH
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH----------HHHH
Confidence 3 332211100 01223 677777777665 34333 246777777777654311 0000
Q ss_pred CCcCCCCC-CCcEEecccCCCceeecccCch-hhhhc-ccccEEeeccCccccc-----ccCCccc-CCCCCEEEEccCC
Q 014100 216 FDEKVAFP-QLRYLELSRLHKVQHLWKENDE-SNKAF-ANLIRLKISECSKLQK-----LVTPSWH-LENLATLEVSKCH 286 (430)
Q Consensus 216 ~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~ 286 (430)
.......+ +|++|+++++ .++......+. ....+ ++|+.|++++|. ++. ++..+.. .++|+.|+++++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 01112233 7777777774 55544332221 01233 477777777764 332 3333333 3477777777753
Q ss_pred Ccccccc---ccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC
Q 014100 287 GLINVLT---LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 287 ~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
+.+.+. ......+++|+.|++++|. +.++..............+++|+.|++++++
T Consensus 237 -l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 -LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 443322 1123556778888887764 1111000001111122235667777777653
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=5.5e-10 Score=98.15 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. +..+.... ...+++|++|+++++ .+..+++ ..+..+++|++|++++| .+..+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~--------- 91 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGV---FDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTN-QLQSL--------- 91 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC---------
T ss_pred CCCcEEEcCCCc-cCcCChhh---hcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCC-cCCcc---------
Confidence 456666666553 33222111 134556666666654 3444322 22445566666666655 33333
Q ss_pred cCCCcccccccceeecccc
Q 014100 131 KEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~ 149 (430)
+...+..+++|++|+++++
T Consensus 92 ~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHhHhcCccCCCEEEcCCC
Confidence 2333345555555555543
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=1.6e-10 Score=105.61 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=87.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+.++..++++++. +.++. .. ..+++|++|++++| .+..++ . +..+++|++|++++| .+..+
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N-~i~~~------- 78 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQ----KELSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHN-QISDL------- 78 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CH----HHHTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSS-CCCCC-------
T ss_pred HHHHHHHHHhcCCC-ccccc-ch----hhcCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCC-ccCCC-------
Confidence 45556666666544 44332 11 45677777777776 455543 1 556777777777776 44444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+. +..+++|+.|+++++ .++.++. ... ++|+.|++++| .+.+..
T Consensus 79 --~~--l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N-------------------~l~~~~------- 122 (263)
T 1xeu_A 79 --SP--LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN-------------------ELRDTD------- 122 (263)
T ss_dssp --GG--GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS-------------------CCSBSG-------
T ss_pred --hh--hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC-------------------ccCCCh-------
Confidence 22 356677777777764 3443322 111 44444444443 322211
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
....+++|+.|+++++ .++.++ .+ ..+++|+.|+++++ .+..+ ..+..+++|+.|+++++
T Consensus 123 ---------~l~~l~~L~~L~Ls~N-~i~~~~--~l---~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 123 ---------SLIHLKNLEILSIRNN-KLKSIV--ML---GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ---------GGTTCTTCCEEECTTS-CCCBCG--GG---GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ---------hhcCcccccEEECCCC-cCCCCh--HH---ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 2345566666666663 455442 22 55566666666654 23333 33445555555555554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=1.6e-10 Score=105.62 Aligned_cols=154 Identities=17% Similarity=0.254 Sum_probs=104.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..++ .+..+++|++|+++++. +..+. +. ..+++|++|++++| .+...++ +.++++|++|++++| .
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-C
T ss_pred CCccccc-chhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-c
Confidence 3344444 45678999999999885 66543 22 67899999999998 5676544 778999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEP 197 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~ 197 (430)
+..+ +.. .. ++|+.|+++++ .++.++. +..+++|+.|+++++. ++.++
T Consensus 97 l~~l---------~~~--~~-~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~Ls~N~-i~~~~-------------- 144 (263)
T 1xeu_A 97 LKNL---------NGI--PS-ACLSRLFLDNN-ELRDTDS----LIHLKNLEILSIRNNK-LKSIV-------------- 144 (263)
T ss_dssp CSCC---------TTC--CC-SSCCEEECCSS-CCSBSGG----GTTCTTCCEEECTTSC-CCBCG--------------
T ss_pred cCCc---------Ccc--cc-CcccEEEccCC-ccCCChh----hcCcccccEEECCCCc-CCCCh--------------
Confidence 5554 222 22 89999999986 4655532 6778888888888765 33322
Q ss_pred CcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
..+.+++|+.|+++++ .++.+ ..+ ..+++|+.|+++++
T Consensus 145 --------------------~l~~l~~L~~L~L~~N-~i~~~--~~l---~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 --------------------MLGFLSKLEVLDLHGN-EITNT--GGL---TRLKKVNWIDLTGQ 182 (263)
T ss_dssp --------------------GGGGCTTCCEEECTTS-CCCBC--TTS---TTCCCCCEEEEEEE
T ss_pred --------------------HHccCCCCCEEECCCC-cCcch--HHh---ccCCCCCEEeCCCC
Confidence 1344566666666663 45544 223 56666777777664
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=1.2e-09 Score=96.93 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccc-cCCcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~ 286 (430)
.+++|++|++++ +.++.+.+..+ ..+++|+.|+++++. ++.+ |..+..+++|+.|++++++
T Consensus 103 ~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRS-NRITCVGNDSF---IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTT-SCCCCBCTTSS---TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCC-CcCCeECHhHc---CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 344555555554 24444444434 445555555555542 2322 3344455666666665543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=7e-10 Score=112.15 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=123.1
Q ss_pred ceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCch
Q 014100 19 KLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPA 98 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 98 (430)
+|+.|.+ .++.+..+|..+ +++|++|+++++. +..++ ..+++|++|++++| .+..++.
T Consensus 60 ~L~~L~L----------s~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip-------~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQL----------NRLNLSSLPDNL--PPQITVLEITQNA-LISLP-------ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TCSEEEC----------CSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CccEEEe----------CCCCCCccCHhH--cCCCCEEECcCCC-Ccccc-------cccCCCCEEEccCC-CCCCcch-
Confidence 6778887 334556677665 4899999999886 66433 45899999999998 6776544
Q ss_pred hHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 99 NLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 99 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
+.+ +|++|++++| .+..+ |. .+++|+.|+++++ .++.++. .+++|++|++++|.
T Consensus 118 --l~~--~L~~L~Ls~N-~l~~l---------p~----~l~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~- 171 (571)
T 3cvr_A 118 --LPA--SLKHLDVDNN-QLTML---------PE----LPALLEYINADNN-QLTMLPE------LPTSLEVLSVRNNQ- 171 (571)
T ss_dssp --CCT--TCCEEECCSS-CCSCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-
T ss_pred --hhc--CCCEEECCCC-cCCCC---------CC----cCccccEEeCCCC-ccCcCCC------cCCCcCEEECCCCC-
Confidence 322 9999999998 55555 33 5789999999986 4665543 57899999999986
Q ss_pred ccccc--CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccccE
Q 014100 179 METFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 179 l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
++.+| .++|+.|++++|.+..++. +...+ ...+.|+.|++++ +.++.++.. + ..+++|+.
T Consensus 172 L~~lp~l~~~L~~L~Ls~N~L~~lp~------------~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~-l---~~l~~L~~ 234 (571)
T 3cvr_A 172 LTFLPELPESLEALDVSTNLLESLPA------------VPVRNHHSEETEIFFRCRE-NRITHIPEN-I---LSLDPTCT 234 (571)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSSCCC------------CC--------CCEEEECCS-SCCCCCCGG-G---GGSCTTEE
T ss_pred CCCcchhhCCCCEEECcCCCCCchhh------------HHHhhhcccccceEEecCC-CcceecCHH-H---hcCCCCCE
Confidence 55454 3678888888887665441 00000 0112237777776 366655432 2 44677777
Q ss_pred EeeccCcccccccC
Q 014100 256 LKISECSKLQKLVT 269 (430)
Q Consensus 256 L~l~~c~~l~~l~~ 269 (430)
|+++++.....+|.
T Consensus 235 L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 235 IILEDNPLSSRIRE 248 (571)
T ss_dssp EECCSSSCCHHHHH
T ss_pred EEeeCCcCCCcCHH
Confidence 77777654444443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.01 E-value=1.7e-09 Score=103.54 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=101.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCC-CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
+.++.+|..+ .+.++.|+++++. +..+.... .. .+++|++|+++++ .+..+++.. +.++++|++|++++|
T Consensus 28 ~~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~---~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 28 QQLPNVPQSL--PSYTALLDLSHNN-LSRLRAEW---TPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN- 98 (361)
T ss_dssp SCCSSCCSSC--CTTCSEEECCSSC-CCEECTTS---SSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-
T ss_pred CCcCccCccC--CCCCCEEECCCCC-CCccChhh---hhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-
Confidence 4556676654 3458888888765 66554433 12 6788888888876 566654433 667888888888887
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCC
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
.+..+ +...+..+++|+.|+++++. +..+... .+..+++|+.|+++++. ++.++.
T Consensus 99 ~l~~~---------~~~~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N~-l~~l~~------------ 153 (361)
T 2xot_A 99 HLHTL---------DEFLFSDLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQNQ-ISRFPV------------ 153 (361)
T ss_dssp CCCEE---------CTTTTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSSC-CCSCCG------------
T ss_pred cCCcC---------CHHHhCCCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCCc-CCeeCH------------
Confidence 56666 44445777888888888753 4444221 14556677777766654 332221
Q ss_pred CCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc--ccEEeeccC
Q 014100 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN--LIRLKISEC 261 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~--L~~L~l~~c 261 (430)
..|.....+++|+.|++++ +.++.++...+ ..++. ++.|++.++
T Consensus 154 -----------------~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~---~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 154 -----------------ELIKDGNKLPKLMLLDLSS-NKLKKLPLTDL---QKLPAWVKNGLYLHNN 199 (361)
T ss_dssp -----------------GGTC----CTTCCEEECCS-SCCCCCCHHHH---HHSCHHHHTTEECCSS
T ss_pred -----------------HHhcCcccCCcCCEEECCC-CCCCccCHHHh---hhccHhhcceEEecCC
Confidence 1112224567788888877 46666554433 44554 366777654
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=1.7e-09 Score=96.01 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=79.5
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~---~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGA---FSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTS---STTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhH---hhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC-c
Confidence 45566766553 688888888775 66544322 256788888888887 466554443 777888888888887 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ |..++..+++|+.|+++++ .+..++.. .+..+++|+.|+++++.
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 92 ITEL---------PKSLFEGLFSLQLLLLNAN-KINCLRVD--AFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred CCcc---------CHhHccCCCCCCEEECCCC-CCCEeCHH--HcCCCCCCCEEECCCCc
Confidence 5555 5565677888888888875 45544322 14566777777776654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.00 E-value=1.6e-09 Score=96.80 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=75.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+. ++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++| .
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPG---VFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-C
T ss_pred CCcCccCCCCC--CCCCEEEcCCCc-cCccCHH---HhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCC-c
Confidence 44566665543 778888888765 5533211 1256778888888876 4555433 33567888888888877 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|+.|+++++ .+..+|.. +..+++|+.|+++++.
T Consensus 100 l~~l---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 100 LTVL---------PSAVFDRLVHLKELFMCCN-KLTELPRG---IERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCCSCCTT---GGGCTTCSEEECCSSC
T ss_pred CCcc---------ChhHhCcchhhCeEeccCC-cccccCcc---cccCCCCCEEECCCCc
Confidence 5555 4444567788888888774 45566544 5667777777776653
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=4.2e-09 Score=92.43 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|+.|+++++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 3455555555552 4444443333 45555666666554 33333332 345666666666655
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.98 E-value=4.4e-09 Score=93.90 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 286 (430)
.+++|+.|++++ +.++.++ ..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|++.+++
T Consensus 110 ~l~~L~~L~Ls~-N~l~~lp-~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCC-NKLTELP-RGI---ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCS-SCCCSCC-TTG---GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccC-CcccccC-ccc---ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 344555555554 2444332 222 45555555555553 3344432 24455666666666543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.95 E-value=9.5e-09 Score=91.12 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
.+++|+.|++++ +.++.+.+..+ ..+++|+.|+++++ .++.+++ .+..+++|+.|+++++
T Consensus 102 ~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNA-NKINCLRVDAF---QDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCC-CCCCEeCHHHc---CCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 455666666665 35555544444 55566666666654 3333332 2445566666666554
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=5e-11 Score=120.95 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeec--------cCC-CCCCCCCCCccEEE
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIW--------HGQ-ALPVSFFNNLRHLV 85 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~--------~~~-~~~~~~~~~L~~L~ 85 (430)
...++|+.+.+ -.+.+..+|.++..+++|+.|+++++..+.... .+. +.....+++|+.|+
T Consensus 346 ~~~~~L~~L~L----------s~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCEL----------SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCC----------CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccC----------ChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 34555666665 457788999999999999999986553111000 000 00013345555555
Q ss_pred -eecCcCCCcCCchh----HHhh--cCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 86 -VDDCTNMLSAIPAN----LIRC--LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 86 -l~~c~~l~~~~~~~----~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++.+ .+..+.... .+.. ..+|++|++++| .+..+ |. +..+++|+.|+++++ .++.+|..
T Consensus 416 ~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~l---------p~--~~~l~~L~~L~Ls~N-~l~~lp~~ 481 (567)
T 1dce_A 416 PMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVL---------CH--LEQLLLVTHLDLSHN-RLRALPPA 481 (567)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSC---------CC--GGGGTTCCEEECCSS-CCCCCCGG
T ss_pred chhhc-ccchhhhhhhhcccccccCccCceEEEecCC-CCCCC---------cC--ccccccCcEeecCcc-cccccchh
Confidence 2221 111111000 0111 124666777666 44444 32 356666777777664 34455443
Q ss_pred cccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee
Q 014100 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 238 (430)
+..+++|+.|+++++. +.+++ ..+.+++|+.|++++ +.++.
T Consensus 482 ---~~~l~~L~~L~Ls~N~-------------------l~~lp----------------~l~~l~~L~~L~Ls~-N~l~~ 522 (567)
T 1dce_A 482 ---LAALRCLEVLQASDNA-------------------LENVD----------------GVANLPRLQELLLCN-NRLQQ 522 (567)
T ss_dssp ---GGGCTTCCEEECCSSC-------------------CCCCG----------------GGTTCSSCCEEECCS-SCCCS
T ss_pred ---hhcCCCCCEEECCCCC-------------------CCCCc----------------ccCCCCCCcEEECCC-CCCCC
Confidence 5566666666666543 33211 245677888888887 46766
Q ss_pred ec-ccCchhhhhcccccEEeeccCcccccccCCcc----cCCCCCEEE
Q 014100 239 LW-KENDESNKAFANLIRLKISECSKLQKLVTPSW----HLENLATLE 281 (430)
Q Consensus 239 ~~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~ 281 (430)
+. +..+ ..+++|+.|+++++ .++.+|+... .+++|+.|+
T Consensus 523 ~~~p~~l---~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAIQPL---VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTTGGG---GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcHHH---hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 64 4555 77888888888886 4555544332 367787775
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.1e-08 Score=96.48 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCC-EEEEccCCCcccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~ 299 (430)
+++|+++++.++ +++.++...+ ..+.+|+.+++.+. +..++.. +..+++|+ .+.+.. .++.+... .+.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTT
T ss_pred cCCCeEEECCCC-CcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhC
Confidence 678999999873 6888887777 88889999998773 6666543 45778888 888876 56666544 3567
Q ss_pred ccCccEEEEcccccchhh
Q 014100 300 LVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~ 317 (430)
|++|+.+++.. +.++.+
T Consensus 296 c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 296 CDNLRYVLATG-DKITTL 312 (329)
T ss_dssp CTTEEEEEECS-SCCCEE
T ss_pred CccCCEEEeCC-CccCcc
Confidence 88899998854 244444
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=2.7e-11 Score=122.93 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++.++ ..+ ..+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+.....+.
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp-~~~---~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALP-PAL---AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCC-GGG---GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred ccccccCcEeecCcc-cccccc-hhh---hcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 344556666666653 455442 233 55566666666654 344444 4555566666666554 233331011244
Q ss_pred cccCccEEEEccc
Q 014100 299 SLVNLGRMKIADC 311 (430)
Q Consensus 299 ~l~~L~~L~l~~c 311 (430)
.+++|+.|+++++
T Consensus 531 ~l~~L~~L~L~~N 543 (567)
T 1dce_A 531 SCPRLVLLNLQGN 543 (567)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEEecCC
Confidence 5555555555554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=1.6e-09 Score=91.75 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=54.1
Q ss_pred hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 42 KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 42 ~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
.+|..+..+++|++|+++++. +..+ .. ...+++|++|++++| .+...++. .+..+++|++|++++| .+..+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~ 110 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVG-LISV-SN----LPKLPKLKKLELSEN-RIFGGLDM-LAEKLPNLTHLNLSGN-KLKDI 110 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSC-CCCC-SS----CCCCSSCCEEEEESC-CCCSCCCH-HHHHCTTCCEEECBSS-SCCSS
T ss_pred hHHHHHHhCCCCCEEeCcCCC-CCCh-hh----hccCCCCCEEECcCC-cCchHHHH-HHhhCCCCCEEeccCC-ccCcc
Confidence 344444555566666666554 4432 11 134556666666655 33332222 2444666666666655 33332
Q ss_pred eccccccCCcCCCcccccccceeeccccccccccccC-cccccCCCCccEEEEecCC
Q 014100 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF-TENIIEMPELRYLAIENCP 177 (430)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~ 177 (430)
.. +.. +..+++|+.|+++++. +..++.. ...+..+++|++|++.+|.
T Consensus 111 ~~-------~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 111 ST-------LEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GG-------GGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hh-------HHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 10 011 2445556666665542 3333220 0013445555555555554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.91 E-value=1.1e-08 Score=97.93 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc----ccCCCCCEEEEccCCCccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS----WHLENLATLEVSKCHGLINVLTLST 296 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~ 296 (430)
.+++|+.|+|++ +.++.+.+..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .++.++.. .
T Consensus 110 ~l~~L~~L~L~~-N~i~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~ 182 (361)
T 2xot_A 110 DLQALEVLLLYN-NHIVVVDRNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-D 182 (361)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-H
T ss_pred CCcCCCEEECCC-CcccEECHHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-H
Confidence 345555555555 24554444444 55555555555553 344444332 34566666666553 34444321 1
Q ss_pred cccccC--ccEEEEcc
Q 014100 297 SESLVN--LGRMKIAD 310 (430)
Q Consensus 297 ~~~l~~--L~~L~l~~ 310 (430)
+..++. |+.|++.+
T Consensus 183 ~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHSCHHHHTTEECCS
T ss_pred hhhccHhhcceEEecC
Confidence 233333 35566554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.89 E-value=2.5e-08 Score=88.34 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
..+++|+.|++++ +.++.+.+..+ ..+++|+.|+++++
T Consensus 126 ~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N 163 (220)
T 2v70_A 126 IGLSSVRLLSLYD-NQITTVAPGAF---DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCSEEECTT-SCCCCBCTTTT---TTCTTCCEEECCSC
T ss_pred CCCccCCEEECCC-CcCCEECHHHh---cCCCCCCEEEecCc
Confidence 3455666666665 35555544444 55566666666554
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=2.6e-09 Score=88.45 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=80.3
Q ss_pred ccceeeeEeecccccccCccchhhh--hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCc
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQ--KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS 94 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 94 (430)
.++|+.+.+ .++.+. .+|..+..+++|++|+++++. +..+ .. ...+++|++|++++| .+..
T Consensus 16 ~~~l~~L~l----------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~n-~i~~ 78 (149)
T 2je0_A 16 PSDVKELVL----------DNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-AN----LPKLNKLKKLELSDN-RVSG 78 (149)
T ss_dssp GGGCSEEEC----------TTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TT----CCCCTTCCEEECCSS-CCCS
T ss_pred CccCeEEEc----------cCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hh----hhcCCCCCEEECCCC-cccc
Confidence 466777777 223344 566666778888888888775 5543 22 256788888888877 4555
Q ss_pred CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC-cccccCCCCccEEEE
Q 014100 95 AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF-TENIIEMPELRYLAI 173 (430)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~l 173 (430)
..|. .+.++++|++|++++| .+..+.. +.. +..+++|++|+++++ .+..++.. ...+..+++|+.|++
T Consensus 79 ~~~~-~~~~l~~L~~L~ls~N-~i~~~~~-------~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 79 GLEV-LAEKCPNLTHLNLSGN-KIKDLST-------IEP-LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTHH-HHHHCTTCCEEECTTS-CCCSHHH-------HGG-GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hHHH-HhhhCCCCCEEECCCC-cCCChHH-------HHH-HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 3333 3666888888888887 3443310 122 367788888888876 34444330 011556777777765
Q ss_pred e
Q 014100 174 E 174 (430)
Q Consensus 174 ~ 174 (430)
+
T Consensus 148 ~ 148 (149)
T 2je0_A 148 Y 148 (149)
T ss_dssp B
T ss_pred C
Confidence 4
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.77 E-value=1.9e-08 Score=87.07 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=77.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+. .+|++|+++++. +..+.... ....+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 18 ~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~ 89 (192)
T 1w8a_A 18 RGLKEIPRDIP--LHTTELLLNDNE-LGRISSDG--LFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-K 89 (192)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSC--SGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-C
T ss_pred CCcCcCccCCC--CCCCEEECCCCc-CCccCCcc--ccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-c
Confidence 45566776553 388888888775 55433210 1256788888888887 566654443 677888888888887 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|++|+++++. +..+... .+..+++|++|++.+++
T Consensus 90 l~~~---------~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEI---------SNKMFLGLHQLKTLNLYDNQ-ISCVMPG--SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEE---------CSSSSTTCTTCCEEECCSSC-CCEECTT--SSTTCTTCCEEECTTCC
T ss_pred CCcc---------CHHHhcCCCCCCEEECCCCc-CCeeCHH--HhhcCCCCCEEEeCCCC
Confidence 6665 34434777888888888753 4444221 15567777777776655
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=6.3e-08 Score=91.33 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccc-eeecccCCCCceecCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCLG 352 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~ 352 (430)
+++|+.+++.++ .++.++... +.++.+|+++++.+. ++.+... ....+++|+ .+.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence 567777777754 366665542 456777888777652 3333210 112256677 777765 67777653
Q ss_pred CcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEe
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVK 389 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~ 389 (430)
.+..|++|+.+++.+ ..++.++.. +..+++|+.|.
T Consensus 292 -aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred -hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 234678888888754 356566553 55677887765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=1.4e-08 Score=85.88 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.3
Q ss_pred CCCccEEEeccC
Q 014100 358 FPSLEHVVVRQC 369 (430)
Q Consensus 358 ~~~L~~L~l~~c 369 (430)
+++|++|++.+|
T Consensus 146 l~~L~~L~l~~n 157 (168)
T 2ell_A 146 LPQLTYLDGYDR 157 (168)
T ss_dssp CSSCCEETTEET
T ss_pred CccCcEecCCCC
Confidence 566666666555
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.71 E-value=3e-08 Score=85.96 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=70.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+ .++|++|+++++. +..++... ..+++|++|+++++ .+..+++. .+.++++|++|++++| .
T Consensus 20 ~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~----~~l~~L~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 20 KGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKEL----SNYKHLTLIDLSNN-RISTLSNQ-SFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGG----GGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-C
T ss_pred CCCCcCCCCC--CCCCCEEECCCCc-CchhHHHh----hcccCCCEEECCCC-cCCEeCHh-HccCCCCCCEEECCCC-c
Confidence 4455666554 3577777777665 55443222 56777777777776 45554433 2667777777777776 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|+.|+++++ .++.++... ...+++|+.|++.+++
T Consensus 90 l~~i---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCI---------PPRTFDGLKSLRLLSLHGN-DISVVPEGA--FNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBC---------CTTTTTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSSC
T ss_pred cCEe---------CHHHhCCCCCCCEEECCCC-CCCeeChhh--hhcCccccEEEeCCCC
Confidence 5544 3333466777777777764 455554321 3456666666666554
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=1.7e-08 Score=105.50 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+...+..+..+++|+.|+++++. +..++... ..+++|++|+|++| .+..++ .. +.++++|++|++++| .
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~l~~L~~L~Ls~N-~l~~lp-~~-~~~l~~L~~L~Ls~N-~ 281 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANI----FKYDFLTRLYLNGN-SLTELP-AE-IKNLSNLRVLDLSHN-R 281 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGG----GGCCSCSCCBCTTS-CCSCCC-GG-GGGGTTCCEEECTTS-C
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhh----cCCCCCCEEEeeCC-cCcccC-hh-hhCCCCCCEEeCcCC-c
Confidence 3344455667778888888888776 55544444 56788888888887 566543 33 677888888888887 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
+..+ |..+ ..+++|++|+|+++ .++.+|.. +..+++|++|+++++..
T Consensus 282 l~~l---------p~~~-~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 282 LTSL---------PAEL-GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSSC---------CSSG-GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTSCC
T ss_pred CCcc---------Chhh-cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCCcc
Confidence 5555 5554 77888888888876 56677655 77788888888888763
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=2.1e-08 Score=82.89 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
..+++|+.|+++++ .++.+ ..+ ..+++|++|+++++.....+|.....+++|+.|+++++. ++.++....+..
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~--~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI--ANL---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC--TTC---CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred hhcCCCcEEECcCC-CCCCc--hhh---hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 34556666666553 44443 222 455556666665543322243333345556666665543 333321112344
Q ss_pred ccCccEEEEccc
Q 014100 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|++|++++|
T Consensus 112 l~~L~~L~l~~N 123 (149)
T 2je0_A 112 LENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEeCcCC
Confidence 555555555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=5.4e-08 Score=82.94 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC--CcccCCCCCEEEEccCCCccccccc--
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTL-- 294 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~~~-- 294 (430)
.+.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+|. .+..+++|+.|++++++ +..++..
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~ 133 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL 133 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence 455677777777773 6666654433 66777777777775 3455554 45567777777777654 3333321
Q ss_pred cccccccCccEEEEcccc
Q 014100 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|+.|+++++.
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 014556777777776654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=1.8e-08 Score=85.94 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+|++|+++++. +..+ ... ..+++|++|++++| .+..+++ ..+..+++|++|++++| .+..+ |
T Consensus 43 ~L~~L~Ls~N~-l~~~-~~l----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~---------~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL-DGF----PLLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNN-SLVEL---------G 104 (176)
T ss_dssp CCSEEECCSSC-CCEE-CCC----CCCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSC-CCCCG---------G
T ss_pred CCCEEECCCCC-CCcc-ccc----ccCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCC-cCCcc---------h
Confidence 66666666554 4443 111 45566666666665 3444332 22455666666666665 33333 1
Q ss_pred C-CCcccccccceeeccccccccccccCc-ccccCCCCccEEEEecCC
Q 014100 132 E-HIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENCP 177 (430)
Q Consensus 132 ~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~c~ 177 (430)
. ..+..+++|+.|++++++ +..++... ..+..+++|+.|+++++.
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 1 112455666666666543 33332210 003445555555555543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=5.6e-08 Score=84.23 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=87.8
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEe
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVV 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 86 (430)
++.+|.++ .++|+++.+ .++.+..+|..+..+++|++|+++++. ++.+.... ...+++|++|++
T Consensus 22 l~~ip~~~--~~~l~~L~L----------~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~L 85 (193)
T 2wfh_A 22 LKVLPKGI--PRDVTELYL----------DGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS---FSNMTQLLTLIL 85 (193)
T ss_dssp CSSCCSCC--CTTCCEEEC----------CSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEEC
T ss_pred CCcCCCCC--CCCCCEEEC----------CCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH---ccCCCCCCEEEC
Confidence 34445443 357888888 446667788888899999999999876 66543222 267899999999
Q ss_pred ecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccc
Q 014100 87 DDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 87 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
+++ .+..+++.. +.++++|++|++++| .+..+ +...+..+++|+.|++.+++
T Consensus 86 s~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVV---------PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBC---------CTTTTTTCTTCCEEECCSSC
T ss_pred CCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCee---------ChhhhhcCccccEEEeCCCC
Confidence 997 577765543 788999999999998 56665 55556889999999999864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=9.2e-08 Score=81.50 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=74.5
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+ .++|++|+++++. +..+.... ...+++|++|+++++ .+..+++ ..+..+++|++|++++| .
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-C
T ss_pred CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHH---hcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-C
Confidence 4455566443 3678888888765 55332211 245778888888876 5565443 33567888888888877 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|++|+++++ .++.++... ...+++|++|++.+++
T Consensus 88 l~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSL---------PNGVFDKLTQLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred cccc---------CHHHhhCCcccCEEECcCC-cceEeCHHH--hcCCcccCEEEecCCC
Confidence 5544 4444467788888888775 455554431 3456777777776665
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.62 E-value=1.7e-07 Score=81.00 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=66.6
Q ss_pred ceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCC
Q 014100 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 133 (430)
++++++++. +..++.. -.++|++|+++++ .+..+++...+..+++|++|++++| .+..+ +..
T Consensus 11 ~~l~~s~~~-l~~ip~~------~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRD------IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI---------EPN 72 (192)
T ss_dssp TEEECTTSC-CSSCCSC------CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB---------CTT
T ss_pred CEEEcCCCC-cCcCccC------CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCc---------CHh
Confidence 567777654 5544332 2448888888887 5666555444678888999999887 45444 233
Q ss_pred CcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+..+++|++|+++++ .++.++... +..+++|++|+++++.
T Consensus 73 ~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 73 AFEGASHIQELQLGEN-KIKEISNKM--FLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSSS--STTCTTCCEEECCSSC
T ss_pred HcCCcccCCEEECCCC-cCCccCHHH--hcCCCCCCEEECCCCc
Confidence 3477888888888875 455553321 4556777777777654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=6.6e-06 Score=79.57 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=110.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+......-.+|+.+.+.+. ++.+.... ..-.+|+.+.+.. ++..+... .+.+|++|+.+++.++ .
T Consensus 122 ~~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~a----F~~~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n-~ 191 (401)
T 4fdw_A 122 NSVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMA----FFNSTVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKT-K 191 (401)
T ss_dssp TTCCEECTTTTTTCCCSEEECCTT--CCEECTTT----TTTCCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTS-C
T ss_pred CccCEehHhhcccCCccEEEeCCC--ccEECHHh----cCCCCceEEEeCC--CccEehHH-HhhCcccCCeeecCCC-c
Confidence 334444444333346777776532 55443333 1113577777764 45554332 3667777777777654 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEe
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTT 192 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l 192 (430)
+..+ +...+. +.+|+.+.+.+ .++.+... ....+++|+.+.+.. .++.++ ..+|+.+.+
T Consensus 192 l~~I---------~~~aF~-~~~L~~l~lp~--~l~~I~~~--aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 192 ITKL---------PASTFV-YAGIEEVLLPV--TLKEIGSQ--AFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp CSEE---------CTTTTT-TCCCSEEECCT--TCCEECTT--TTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE
T ss_pred ceEe---------chhhEe-ecccCEEEeCC--chheehhh--HhhCCCCCCEEecCC--CccCccccccccCCccEEEe
Confidence 5555 344333 45666666653 24444222 134556666666643 233333 234555555
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCC----CceeecccCchhhhhcccccEEeeccCccccccc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH----KVQHLWKENDESNKAFANLIRLKISECSKLQKLV 268 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~----~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 268 (430)
.++ +..+.. .....+++|+.+.+.+.. .+..+....+ ..|++|+.+.+.+ .+..+.
T Consensus 256 p~~-i~~I~~--------------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~--~i~~I~ 315 (401)
T 4fdw_A 256 PNG-VTNIAS--------------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE--SIRILG 315 (401)
T ss_dssp ETT-CCEECT--------------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT--TCCEEC
T ss_pred CCC-ccEECh--------------hHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC--ceEEEh
Confidence 322 221110 112345666666665421 1123444545 6666666666653 344443
Q ss_pred C-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 269 T-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 269 ~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
. .+..+++|+.+.+.. .++.+.... +.++ +|+.+++.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred hhhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 2 233556666666643 344444332 3345 6666666553
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.59 E-value=1.9e-09 Score=94.01 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCCCCCcccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCC
Q 014100 1 MTRCPNMKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN 80 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 80 (430)
|++++.++.-.+.+...+++..+.+.+ ....|. .+.++.+|..+..+++|++|+++++. +..+. .. ..+++
T Consensus 1 m~~~~~~~~~~~~~~~~~~l~~l~l~~--~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~ 71 (198)
T 1ds9_A 1 MAKATTIKDAIRIFEERKSVVATEAEK--VELHGM-IPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMEN 71 (198)
T ss_dssp CCCCSCHHHHHHHHHHTTCCCCTTCSE--EECCBC-CTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTT
T ss_pred CcchhHHHHHHHHHHhcccccCcchhe--eEeccc-cCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCC
Confidence 455555544433333344444444322 111222 24566777778888899999998775 55433 22 56788
Q ss_pred ccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc
Q 014100 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
|++|++++| .+..++. .+..+++|++|++++| .+..+ | . +..+++|+.|+++++ .+..++.. .
T Consensus 72 L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N-~l~~l---------~-~-~~~l~~L~~L~l~~N-~i~~~~~~-~ 134 (198)
T 1ds9_A 72 LRILSLGRN-LIKKIEN--LDAVADTLEELWISYN-QIASL---------S-G-IEKLVNLRVLYMSNN-KITNWGEI-D 134 (198)
T ss_dssp CCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEE-ECCCH---------H-H-HHHHHHSSEEEESEE-ECCCHHHH-H
T ss_pred CCEEECCCC-Ccccccc--hhhcCCcCCEEECcCC-cCCcC---------C-c-cccCCCCCEEECCCC-cCCchhHH-H
Confidence 999999887 4565443 2666788999999888 45444 2 2 367788888888875 34443321 1
Q ss_pred cccCCCCccEEEEecCC
Q 014100 161 NIIEMPELRYLAIENCP 177 (430)
Q Consensus 161 ~~~~l~~L~~L~l~~c~ 177 (430)
.+..+++|++|++.+|+
T Consensus 135 ~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHTTTTTCSEEEECSCH
T ss_pred HHhcCCCCCEEEecCCc
Confidence 15667888888887765
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=3.8e-06 Score=81.26 Aligned_cols=256 Identities=10% Similarity=0.051 Sum_probs=167.9
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+..++.+.+.+ .++.+.... . .. .+|+.+.+.. ++..+.... +.++ +|+.+.+.+ .+..+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~a-F--~~-~~L~~i~l~~--~i~~I~~~a-F~~~-~L~~i~lp~--~l~~I------- 171 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDA-F--RN-SQIAKVVLNE--GLKSIGDMA-FFNS-TVQEIVFPS--TLEQL------- 171 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTT-T--TT-CCCSEEECCT--TCCEECTTT-TTTC-CCCEEECCT--TCCEE-------
T ss_pred ecCCccEEEECC--ccCEehHhh-c--cc-CCccEEEeCC--CccEECHHh-cCCC-CceEEEeCC--CccEe-------
Confidence 347788888774 366555444 1 22 4799999876 567655443 5554 799999985 67777
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~ 202 (430)
+...+..+++|+.+++.++ .+..++.. ...+.+|+.+.+.. .++.++ +.+|+.+.+.++ +..+.
T Consensus 172 --~~~aF~~c~~L~~l~l~~n-~l~~I~~~---aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~- 241 (401)
T 4fdw_A 172 --KEDIFYYCYNLKKADLSKT-KITKLPAS---TFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIG- 241 (401)
T ss_dssp --CSSTTTTCTTCCEEECTTS-CCSEECTT---TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEEC-
T ss_pred --hHHHhhCcccCCeeecCCC-cceEechh---hEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcc-
Confidence 5666789999999999863 56777655 33368999999964 355555 567888888764 22222
Q ss_pred CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccc----cccc-CCcccCCCC
Q 014100 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKL----QKLV-TPSWHLENL 277 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~l~-~~~~~l~~L 277 (430)
...|. -.+|+.+.+. ++++.+....+ ..+++|+.+.+.+.... ..++ ..+..+++|
T Consensus 242 ----------~~aF~----~~~L~~i~lp--~~i~~I~~~aF---~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 242 ----------QEAFR----ESGITTVKLP--NGVTNIASRAF---YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp ----------TTTTT----TCCCSEEEEE--TTCCEECTTTT---TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred ----------ccccc----cCCccEEEeC--CCccEEChhHh---hCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 11122 2689999995 47888888877 89999999999874321 1343 345578899
Q ss_pred CEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccC
Q 014100 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALE 357 (430)
Q Consensus 278 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 357 (430)
+.+.+.. .++.+... .+.+|.+|+.+++.. .++.+-. . ....+ +|+.+.+.+. .+..+..+. +..
T Consensus 303 ~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~---~----aF~~~-~L~~l~l~~n-~~~~l~~~~-F~~ 367 (401)
T 4fdw_A 303 ARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA--NVTQINF---S----AFNNT-GIKEVKVEGT-TPPQVFEKV-WYG 367 (401)
T ss_dssp CEECCCT--TCCEECTT-TTTTCCSCCEEEECT--TCCEECT---T----SSSSS-CCCEEEECCS-SCCBCCCSS-CCC
T ss_pred CeEEeCC--ceEEEhhh-hhcCCCCccEEEECc--cccEEcH---H----hCCCC-CCCEEEEcCC-CCccccccc-ccC
Confidence 9999973 57777654 356789999999954 2443321 0 11225 8999999875 444544322 222
Q ss_pred CC-CccEEEec
Q 014100 358 FP-SLEHVVVR 367 (430)
Q Consensus 358 ~~-~L~~L~l~ 367 (430)
++ .++.|.+.
T Consensus 368 ~~~~l~~l~vp 378 (401)
T 4fdw_A 368 FPDDITVIRVP 378 (401)
T ss_dssp SCTTCCEEEEC
T ss_pred CCCCccEEEeC
Confidence 43 45666653
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.55 E-value=7.8e-08 Score=100.46 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=83.0
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccce-eeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
.+.+.++++++ ..+.+...+..+....+|..+.+....... .+.... .....+++|+.|+++++ .+.
T Consensus 170 ~s~~~~~~l~L----------~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~-~~~~~l~~L~~L~Ls~n-~l~ 237 (727)
T 4b8c_D 170 VSTPLTPKIEL----------FANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPK-DSKYDDQLWHALDLSNL-QIF 237 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTS-CCS
T ss_pred ecCCccceEEe----------eCCCCCcchhhHhhcCccCcccccCccccccceecCh-hhhccCCCCcEEECCCC-CCC
Confidence 33456677776 334555566566566666666655432111 001000 11256789999999997 466
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.+++. +.++++|++|++++| .+..+ |..+ ..+++|+.|+|+++ .++.+|.. +..+++|++|++
T Consensus 238 ~l~~~--~~~l~~L~~L~Ls~N-~l~~l---------p~~~-~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L 300 (727)
T 4b8c_D 238 NISAN--IFKYDFLTRLYLNGN-SLTEL---------PAEI-KNLSNLRVLDLSHN-RLTSLPAE---LGSCFQLKYFYF 300 (727)
T ss_dssp CCCGG--GGGCCSCSCCBCTTS-CCSCC---------CGGG-GGGTTCCEEECTTS-CCSSCCSS---GGGGTTCSEEEC
T ss_pred CCChh--hcCCCCCCEEEeeCC-cCccc---------Chhh-hCCCCCCEEeCcCC-cCCccChh---hcCCCCCCEEEC
Confidence 54443 448999999999998 55555 5554 88999999999986 46677665 788999999999
Q ss_pred ecCCCccccc-----CCcceEEEecCCCCCccc
Q 014100 174 ENCPDMETFI-----SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 174 ~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~ 201 (430)
++|. ++.+| .++|+.|++++|.+.+..
T Consensus 301 ~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 301 FDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCC-CCccChhhhcCCCccEEeCCCCccCCCC
Confidence 9885 56666 458899999999876543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.49 E-value=1.1e-06 Score=74.64 Aligned_cols=86 Identities=24% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccCCCccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
+.+++|++|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|+.|+++++ .++.++.. .+.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~ 121 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFD 121 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTT
T ss_pred cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-Hhc
Confidence 45667777777763 5666554444 56677777777765 34444433 456677777777665 34544432 234
Q ss_pred cccCccEEEEcccc
Q 014100 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|++|++++++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56677777776653
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1e-07 Score=80.38 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhh----cCCCCEEEEecCCCccE
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRC----LNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~ 120 (430)
.+|++|++++|. +++. +. .....+++|++|++++|..+++..-.. +.. +++|++|+|++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~--GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--GF-DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG--GG-GGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH--HH-HHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCH
Confidence 346666666555 4421 11 111345555555555555444322111 222 23455555555554433
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.36 E-value=1.1e-06 Score=74.27 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
++|++|+++++ .+..+++.. +.++++|++|++++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC
Confidence 44444444443 333332221 334444555555444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=4.5e-09 Score=91.57 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred CCCcccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccE
Q 014100 4 CPNMKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRH 83 (430)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 83 (430)
.|.++.++..+..+++|+++.+ .++.+..+| .+..+++|++|+++++. +..++... ..+++|++
T Consensus 34 ~~~l~~l~~~~~~l~~L~~L~l----------s~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~ 97 (198)
T 1ds9_A 34 IPPIEKMDATLSTLKACKHLAL----------STNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLEE 97 (198)
T ss_dssp CTTCCCCHHHHHHTTTCSEEEC----------SEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSE
T ss_pred cCcHhhhhHHHhcCCCCCEEEC----------CCCCCcccc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCCE
Confidence 3556666777888999999998 345555666 77788999999999886 55433222 45689999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC-----
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF----- 158 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----- 158 (430)
|++++| .+..+ + .+.++++|++|++++| .+..+.. ......+++|++|++.+++-....+..
T Consensus 98 L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~--------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 98 LWISYN-QIASL-S--GIEKLVNLRVLYMSNN-KITNWGE--------IDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp EEEEEE-ECCCH-H--HHHHHHHSSEEEESEE-ECCCHHH--------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred EECcCC-cCCcC-C--ccccCCCCCEEECCCC-cCCchhH--------HHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 999998 56653 3 2778999999999998 4444311 011367899999999987533222110
Q ss_pred --cccccCCCCccEEE
Q 014100 159 --TENIIEMPELRYLA 172 (430)
Q Consensus 159 --~~~~~~l~~L~~L~ 172 (430)
...+..+++|+.|+
T Consensus 165 ~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHCSSCSEEC
T ss_pred HHHHHHHhCCCcEEEC
Confidence 01145678888886
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.32 E-value=1.5e-06 Score=73.72 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.+++|++|+++++ .+..+++ ..+.++++|++|++++|
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC
Confidence 3444444444444 3333222 12334444444444444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.31 E-value=8.4e-07 Score=75.02 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=73.1
Q ss_pred cchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 36 LNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 36 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.++.++.+|..+ .++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++|
T Consensus 17 s~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 17 SGKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPG---VFDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCcCccCccC--CCCCcEEEcCCCc-CCccChh---hhcCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC
Confidence 335677788766 4899999999876 6654222 1267899999999997 5776554 44678999999999998
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccc
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
.+..+ +...+..+++|+.|++++++
T Consensus 89 -~l~~~---------~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 -QLKSI---------PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCC---------CTTTTTTCTTCCEEECCSSC
T ss_pred -ccCEe---------CHHHhcCCCCCCEEEeCCCC
Confidence 66666 55555788999999998864
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.28 E-value=1.2e-06 Score=74.40 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=77.0
Q ss_pred ceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCC
Q 014100 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 133 (430)
+.++++++. +..++.+ -.++|++|+++++ .+..+++.. +.++++|++|++++| .+..+ |..
T Consensus 15 ~~l~~~~n~-l~~iP~~------~~~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i---------~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAG------IPTDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAI---------PTG 75 (174)
T ss_dssp SEEECCSSC-CSSCCSC------CCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCC---------CTT
T ss_pred cEEEeCCCC-CCccCCC------cCCCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCcc---------Chh
Confidence 567777654 5544432 2488999999987 566655543 778999999999998 67666 666
Q ss_pred CcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
++..+++|+.|+++++ .++.++... +..+++|+.|++.+++
T Consensus 76 ~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDN-HLKSIPRGA--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC
T ss_pred HhCCcchhhEEECCCC-ccceeCHHH--hccccCCCEEEeCCCC
Confidence 6688999999999985 566665432 5679999999999886
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=5.5e-07 Score=75.89 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=16.6
Q ss_pred ccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCc
Q 014100 334 ELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 334 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+|++|++++|+++++-... ....+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 3444444444444442221 11124455555555554444
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=0.00013 Score=70.19 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=134.3
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe-------
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV------- 121 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~------- 121 (430)
.+.+|+.+.+.. .++.+.... ...+.+|+.+++.. ++..+.. ..+.++.+|+.+.+... +..+
T Consensus 69 ~c~~L~~i~lp~--~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~-~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIGEFA---FENCSKLEIINIPD--SVKMIGR-CTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred CCCCceEEEeCC--CccCcchhH---hhCCCCCcEEEeCC--CceEccc-hhhcccccchhhcccCc--eeeecceeeec
Confidence 567777777753 255443332 14567788887764 3444332 33666777776655421 2111
Q ss_pred ------eccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceE
Q 014100 122 ------LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 122 ------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
........+....+..+++|+.+.+.+ .+..+... ....+.+|+.+.+... ++.++ +..|+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~--~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNG--LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT--TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCB
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCC--ccceeccc--cccCCCCceEEEcCCC--ceEeCchhhccccccce
Confidence 111122222344457778888888864 23333222 1445677777776432 33332 334444
Q ss_pred EEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-
Q 014100 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV- 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~- 268 (430)
+.+.++... +. .......+|+.+.+.. .++.+....+ ..+..++.+.+... ...+.
T Consensus 213 i~~~~~~~~-i~---------------~~~~~~~~l~~i~ip~--~~~~i~~~~f---~~~~~l~~~~~~~~--~~~i~~ 269 (394)
T 4fs7_A 213 MEFPNSLYY-LG---------------DFALSKTGVKNIIIPD--SFTELGKSVF---YGCTDLESISIQNN--KLRIGG 269 (394)
T ss_dssp CCCCTTCCE-EC---------------TTTTTTCCCCEEEECT--TCCEECSSTT---TTCSSCCEEEECCT--TCEECS
T ss_pred eecCCCceE-ee---------------hhhcccCCCceEEECC--Cceecccccc---cccccceeEEcCCC--cceeec
Confidence 444332210 00 1112345677776643 4455554544 66667777766542 22222
Q ss_pred CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCce
Q 014100 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 348 (430)
Q Consensus 269 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 348 (430)
.....+..++.+..... .++.. ....+.+|+.+.+.+ .++.+-.. ....+.+|+.+.+. .+++.
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp--~~v~~ 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLP--YLVEE 333 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCC--TTCCE
T ss_pred cccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh-------hhcCCCCCCEEEeC--CcccE
Confidence 12234455555544321 11111 234456666666532 12222100 01114556655553 23555
Q ss_pred ecCCCcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEec
Q 014100 349 FCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP 390 (430)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l 390 (430)
+... .+..|.+|+.+.+.. .++.++.. +..+++|+.+.+
T Consensus 334 I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 334 IGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred EhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 5432 223456666666643 24444433 345566666665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.09 E-value=5.2e-06 Score=78.60 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+..+|. +..+++|++|+|++++.+..+.... ...+++|+.|+|+++ .+..+++.. +.++++|++|+|++| .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-cc
Confidence 5677888 8889999999998745577665332 257899999999987 677765543 778999999999988 56
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccc
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
..+ |..++..++ |+.|++.+++
T Consensus 93 ~~~---------~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESL---------SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCC---------CSTTTCSCC-CCEEECCSSC
T ss_pred cee---------CHHHcccCC-ceEEEeeCCC
Confidence 655 455445555 8888887743
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=3.8e-06 Score=79.93 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=99.8
Q ss_pred ceeeeEeecccccccC-ccchhhhhhhhcccCCCCcceeecccccc--ceeeccCC---CCCCCCCCCccEEEeecCcCC
Q 014100 19 KLHEVQVKGELRRWEG-NLNSTIQKCYEEMIGFRDIKYLQLGHFPR--LQEIWHGQ---ALPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~L~~L~l~~~~~--l~~~~~~~---~~~~~~~~~L~~L~l~~c~~l 92 (430)
+++.+.+ ..|.+.| .....+..+...+..|++|+.|.+.+... ..-.|... ......+|+|+.|.+++|..+
T Consensus 108 ~v~~L~l--g~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 108 SLKQITI--GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GCSEEEE--CCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hcceEEE--cccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3444444 2344443 12134556666666777888887765321 00012111 000135678888888776322
Q ss_pred CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccc-------ccccccCcccccCC
Q 014100 93 LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK-------LKRFCNFTENIIEM 165 (430)
Q Consensus 93 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------l~~~~~~~~~~~~l 165 (430)
.+++ + .+++|++|++..|. +..- ++..+ ....+|+|++|+|..... +..+... .....+
T Consensus 186 -~l~~---~-~~~~L~~L~L~~~~-l~~~----~l~~l---~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~ 251 (362)
T 2ra8_A 186 -SIGK---K-PRPNLKSLEIISGG-LPDS----VVEDI---LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRF 251 (362)
T ss_dssp -BCCS---C-BCTTCSEEEEECSB-CCHH----HHHHH---HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTC
T ss_pred -eecc---c-cCCCCcEEEEecCC-CChH----HHHHH---HHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCC
Confidence 2222 2 26788888887663 3211 00000 012567888887742111 1111111 002357
Q ss_pred CCccEEEEecCCCcccc-------c-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 166 PELRYLAIENCPDMETF-------I-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~-------~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
|+|+.|.+.+|...... + .++|+.|+++.|.+.... ...+...+..+++|+.|+++.| .++
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G----------~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG----------ARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH----------HHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH----------HHHHHhhcccCCcceEEECCCC-cCC
Confidence 88888888877643211 1 457888888877655421 0011122345789999999876 677
Q ss_pred ee
Q 014100 238 HL 239 (430)
Q Consensus 238 ~~ 239 (430)
+.
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=9.8e-06 Score=77.09 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCCCccEEEeecCcC----C---CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc
Q 014100 76 SFFNNLRHLVVDDCTN----M---LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~----l---~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
..+++|+.|.+.+... + .......++..+|+|+.|.+++|..+. + +. + ..++|++|++..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l---------~~-~--~~~~L~~L~L~~ 202 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I---------GK-K--PRPNLKSLEIIS 202 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C---------CS-C--BCTTCSEEEEEC
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e---------cc-c--cCCCCcEEEEec
Confidence 3577888887754210 0 000112346677888888888763321 1 11 1 267788888765
Q ss_pred cccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 149 LPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 149 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+. +............+|+|+.|+++.+..... . +..+.. ....+. .+.+|+|+.|
T Consensus 203 ~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~----------~~~~~~------------l~~~l~-~~~~p~Lr~L 257 (362)
T 2ra8_A 203 GG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYG-F----------DGDMNV------------FRPLFS-KDRFPNLKWL 257 (362)
T ss_dssp SB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGT-C----------CSCGGG------------TGGGSC-TTTCTTCCEE
T ss_pred CC-CChHHHHHHHHccCCCCcEEEEeccccccc-c----------chhHHH------------HHHHHh-cCCCCCcCEE
Confidence 43 222111100012577777777753211000 0 000000 000111 2457899999
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCccccc-----ccCCcccCCCCCEEEEccCCCccc
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~ 290 (430)
.+.+| .+.......+.....+++|++|+++.+ .++. ++..+..+++|+.|+++.|. +.+
T Consensus 258 ~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 258 GIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp EEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred eCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 99886 333221111111135789999999765 4443 44455678999999998774 443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.90 E-value=2.4e-05 Score=73.98 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=65.0
Q ss_pred eeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCC
Q 014100 55 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI 134 (430)
Q Consensus 55 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 134 (430)
.++.++.+++..++. . ..+.+|+.|+|+++..+..+++.. +.++++|++|++++| .+..+ +...
T Consensus 12 ~v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~---------~~~~ 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFV---------APDA 75 (347)
T ss_dssp CEECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEE---------CTTG
T ss_pred EEEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-cccee---------CHHH
Confidence 345555433554443 3 567788888887633666655433 677888888888887 57666 4444
Q ss_pred cccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+++|+.|+|+++ .+..++.. ......|+.|++.+++
T Consensus 76 ~~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFN-ALESLSWK---TVQGLSLQELVLSGNP 114 (347)
T ss_dssp GGSCSCCCEEECCSS-CCSCCCST---TTCSCCCCEEECCSSC
T ss_pred hcCCcCCCEEeCCCC-ccceeCHH---HcccCCceEEEeeCCC
Confidence 577888888888874 56666543 2222237777776654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.87 E-value=0.00081 Score=64.64 Aligned_cols=59 Identities=7% Similarity=-0.043 Sum_probs=41.9
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
..+.+|+.+.+.. ++..+.. ..+.+|.+|+.+++.+ .++.+ +...+..+++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I---------~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIGE-FAFENCSKLEIINIPD--SVKMI---------GRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCT--TCCEECT-TTTTTCTTCCEECCCT--TCCEE---------CTTTTTTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCC--CccCcch-hHhhCCCCCcEEEeCC--CceEc---------cchhhcccccchhhcccC
Confidence 4567899999874 5666544 4488899999999975 36666 455567777887776653
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=3.8e-07 Score=87.44 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=25.4
Q ss_pred CCCCCCcEEecccCCCceeecccCch-hhhhcccccEEeeccCc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECS 262 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~ 262 (430)
...++|+.|++++| .+++.....+. .....++|++|++++|.
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34567888888775 66654433221 11455778888888764
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.75 E-value=2.4e-06 Score=81.86 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=43.2
Q ss_pred CCCCCCcEEecccCCCceeecccCch-hhhhcccccEEeeccCcccc----cccCCcccCCCCCEEEEccCCCcccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~c~~l~~~ 291 (430)
...++|++|+|+++ .+++.....+. .....++|+.|++++|..-. .+...+...++|++|++++|. +.+.
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 45678899998885 55543211110 11556789999999875322 233334456889999998874 5443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.011 Score=56.65 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=32.9
Q ss_pred CceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 235 KVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
.++.+....+ ..+..|+.+.+... ...+. .....+++|+.+.+. ..++.++.. .+.+|.+|+.+++.
T Consensus 252 ~v~~i~~~aF---~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~-aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 252 GVARIETHAF---DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPES-VFAGCISLKSIDIP 319 (394)
T ss_dssp TEEEECTTTT---TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCEEECC
T ss_pred cceEccccee---eecccccEEecccc--cceecCcccccccccccccCC--CcccccCce-eecCCCCcCEEEeC
Confidence 3445444444 56666666666431 22222 123345666666664 234444433 23456666666663
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.56 E-value=0.018 Score=55.12 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred cCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCC
Q 014100 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 352 (430)
.+.+|+.+.+.. .+..+... ...++..|+.+.+.. .++.+... ....+.+|+.+.+-. +++.+...
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~-aF~~c~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTG-AFMNCPALQDIEFSS--RITELPES-------VFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred ecccccEEeccc--ccceecCc-ccccccccccccCCC--cccccCce-------eecCCCCcCEEEeCC--cccEehHh
Confidence 445566666543 22333222 234567777777642 22222100 112266788887753 57777653
Q ss_pred CcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEecccC
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 393 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~ 393 (430)
.+..|.+|+.+.+-. .++.++.. +..+.+|+.+++.+.
T Consensus 329 -aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred -HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 234688999999953 45555543 457899999998654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.32 Score=45.87 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=61.2
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+.+|+.+.+.. .++.+....+ ..+..|+.+.+.. .++.+.. ....+.+|+.+.+.. .++.++.. ...++
T Consensus 216 ~~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c 285 (379)
T 4h09_A 216 GKNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGC 285 (379)
T ss_dssp CSSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTC
T ss_pred ccccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-ccccc
Confidence 45566666543 4555554444 5666677766643 2333322 233456677766643 34444332 23556
Q ss_pred cCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 014100 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 367 (430)
.+|+.+.+.+. .++.+-.. ....+.+|+.+.+- .+++.+... .+..|++|+.+.+.
T Consensus 286 ~~L~~i~l~~~-~i~~I~~~-------aF~~c~~L~~i~lp--~~l~~I~~~-aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNS-AIETLEPR-------VFMDCVKLSSVTLP--TALKTIQVY-AFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCT-TCCEECTT-------TTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCCCCCC
T ss_pred ccccccccccc-ccceehhh-------hhcCCCCCCEEEcC--ccccEEHHH-HhhCCCCCCEEEEC
Confidence 77777766432 22222100 11114566666653 235555442 22345666666653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.30 E-value=0.0011 Score=56.52 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=68.0
Q ss_pred hhhcccCCCCcceeecccccccee-----eccCCCCCCCCCCCccEEEeecCcCCCcCCc---hhHHhhcCCCCEEEEec
Q 014100 43 CYEEMIGFRDIKYLQLGHFPRLQE-----IWHGQALPVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 43 l~~~l~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~ 114 (430)
+...+...++|++|+++++..+.+ +.... ...++|++|++++| .+..... ...+...++|++|++++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L----~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL----KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH----TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH----HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 444466788999999998833552 11111 34678999999987 3443221 11245668899999998
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeec--cccccccccccC--cccccCCCCccEEEEecCC
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTL--MDLPKLKRFCNF--TENIIEMPELRYLAIENCP 177 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~~l~~~~~~--~~~~~~l~~L~~L~l~~c~ 177 (430)
| .+... |...+...+ ...+.|++|++ .++ .+++.... ...+...++|++|++++|.
T Consensus 103 N-~i~~~----g~~~l~~~L-~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 N-FISGS----GILALVEAL-QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp S-CCCHH----HHHHHHHGG-GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred C-cCCHH----HHHHHHHHH-HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8 44332 111111122 44567888888 443 33332100 0003344667777766654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.08 E-value=0.24 Score=46.76 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=77.2
Q ss_pred ccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceec
Q 014100 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
..+.+|+.+.+.. .+..+... ....+..|+.+.+... ++.++ +.+++.+.+.+. +..+.
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~--~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~-------- 278 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDG--AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVP-------- 278 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTT--TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEEC--------
T ss_pred ccccccceeeecc--ceeEEccc--cccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecc--------
Confidence 3445566666543 23333211 1456778888888542 44443 456777777543 22111
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l 288 (430)
......+++|+.+.+.+ +.++.+....+ ..|.+|+.+.+.. .++.+.. .+.++.+|+.+.+.. .+
T Consensus 279 ------~~aF~~c~~L~~i~l~~-~~i~~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v 344 (379)
T 4h09_A 279 ------YLLCSGCSNLTKVVMDN-SAIETLEPRVF---MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SI 344 (379)
T ss_dssp ------TTTTTTCTTCCEEEECC-TTCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TC
T ss_pred ------ccccccccccccccccc-cccceehhhhh---cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--cc
Confidence 01234578999999976 46888877777 8899999999964 3555543 345677888877743 34
Q ss_pred cccc
Q 014100 289 INVL 292 (430)
Q Consensus 289 ~~~~ 292 (430)
+.+.
T Consensus 345 ~~I~ 348 (379)
T 4h09_A 345 TLIE 348 (379)
T ss_dssp CEEC
T ss_pred CEEc
Confidence 4443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.84 E-value=0.0076 Score=54.30 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCCccEEEeecCcCCCcCCch-hHHhhcCCCCEEEEecC
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c 115 (430)
.+++|+.|+|+++ .+..+.+. ..+..+++|+.|++++|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 3566666666665 34443221 23456667777777666
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.64 E-value=0.0034 Score=56.65 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=44.6
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+++|+.|+|+++. +..+.... .....+++|+.|+|+++ .+.+......+..+ +|++|++++|+-
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC
Confidence 468999999999886 65432111 01136999999999987 55554232223334 899999999864
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.31 E-value=0.0036 Score=53.17 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=28.6
Q ss_pred ccccEEeeccCcccc----cccCCcccCCCCCEEEE--ccCCCccccccc---cccccccCccEEEEccc
Q 014100 251 ANLIRLKISECSKLQ----KLVTPSWHLENLATLEV--SKCHGLINVLTL---STSESLVNLGRMKIADC 311 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l--~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c 311 (430)
++|++|++++|..-. .+...+...++|++|++ +++ .+.+-... ..+...+.|++|++++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 455555555543211 12233444556777777 333 34332111 12233467777777665
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.00 E-value=1.5 Score=34.24 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=20.0
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
++|+.|+|++ +.++.++...+ ..+++|+.|+|.+.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCSS
T ss_pred cCCCEEECCC-CcCCccChhhh---hhccccCEEEecCC
Confidence 4566666666 45666555544 55555555555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.47 E-value=2.4 Score=33.12 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=7.1
Q ss_pred CCcccccccceeeccc
Q 014100 133 HIGPLFPKLFELTLMD 148 (430)
Q Consensus 133 ~~~~~l~~L~~L~l~~ 148 (430)
+.+..+++|+.|+|.+
T Consensus 49 ~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 49 GLLDALPALRTAHLGA 64 (130)
T ss_dssp TTGGGCTTCCEEECCS
T ss_pred hhhhhccccCEEEecC
Confidence 3334444444444444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=53.81 E-value=5.6 Score=33.57 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=17.7
Q ss_pred CCCCcEEecccCCCceeecccCchh-hhhcccccEEeeccC
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDES-NKAFANLIRLKISEC 261 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~c 261 (430)
-..|+.|+|+++ .+.+.....+.. +..-++|++|+++++
T Consensus 69 N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 69 SKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp CSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 345666666653 444332222210 123355666666554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=49.42 E-value=4.4 Score=34.22 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=10.2
Q ss_pred CCCCcEEecccCCCcee
Q 014100 222 FPQLRYLELSRLHKVQH 238 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~ 238 (430)
-..|++|+|++ +.+..
T Consensus 97 N~tL~~L~L~~-N~Ig~ 112 (197)
T 1pgv_A 97 SPSLRVLNVES-NFLTP 112 (197)
T ss_dssp CSSCCEEECCS-SBCCH
T ss_pred CCccCeEecCC-CcCCH
Confidence 45788888876 34444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.09 E-value=81 Score=22.90 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=7.8
Q ss_pred CCCcccccccceeecc
Q 014100 132 EHIGPLFPKLFELTLM 147 (430)
Q Consensus 132 ~~~~~~l~~L~~L~l~ 147 (430)
...+..+.+|+.+.|-
T Consensus 13 ~~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQ 28 (100)
T ss_dssp SCTTTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcC
Confidence 3334455555555553
Done!