BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014101
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLRE 341
+C V G GK+ LL S+ F Y PT + YAV V+ GG T+ LR+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGLRD 57
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 252 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 311
+L +I +PG P+ +VT K ++++K + R V + +G + + + +
Sbjct: 293 SLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLK--DYGNMSSATVFFIMDEMRKKSL 350
Query: 312 DNYTPTTDE--RYAVNVVDQPGGTKKTVVLREIP 343
+N TT E + V PG T +TVVLR +P
Sbjct: 351 ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 326
+ +C V G GK+ LL S+ F + Y PT + YAV+V
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 59
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 252 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 311
+L +I +PG P+ +VT K ++++K + R V + +G + + + +
Sbjct: 293 SLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLK--DYGNMSSATVFFIMDEMRKKSL 350
Query: 312 DNYTPTTDE--RYAVNVVDQPGGTKKTVVLREIP 343
+N TT E + V PG T +TVVLR +P
Sbjct: 351 ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ FS Y PT + Y+ NV+
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM 55
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
Q +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 17 QGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 64
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C G GK+ +L S+ G F +Y PT + ++ NVV
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV 48
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 48
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344
+F+ + G GKS LL F ++D+Y T + + + T K + +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 404
E + S+ + V+D +D S+ + + E+ Y + V L+V K
Sbjct: 69 ERFRTITSS--YYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMEN---VNKLLVGNK 123
Query: 405 DDLDSFAMAIQDSTR 419
DL S + D R
Sbjct: 124 CDLVSKRVVTSDEGR 138
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 47
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 47
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 48
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 49
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 46
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 52
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 55
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 49
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 326
+C V G GK+ LL S+ F Y PT + YAV V
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV 44
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 48
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 49
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+ +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM 52
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+ +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 51
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344
+F+ V G GKS LL+ F+ + F D+ T + +++ G K + +
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 404
E + + AA A+ V+D + ++ T L + + ++ K
Sbjct: 70 ERFRSVTRSYYRGAAG--ALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 124
Query: 405 DDLDS 409
DLD+
Sbjct: 125 KDLDA 129
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344
+F+ V G GKS LL+ F+ + F D+ T + +++ G K + +
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 404
E + + AA A+ V+D + ++ T L + + ++ K
Sbjct: 71 ERFRSVTRSYYRGAAG--ALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 125
Query: 405 DDLDS 409
DLD+
Sbjct: 126 KDLDA 130
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ F Y P + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM 45
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 292 GPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 326
G GK+ LL F F ++YTPT ERY VN+
Sbjct: 41 GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C G GK+ LL S+ F +Y PT + ++ NVV
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV 50
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM 45
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 252 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 311
+L +I +PG P+ V K +D+KK +A R+V +G + + + + +
Sbjct: 884 SLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLS--EYGNMSSACVLFILDEMRKKSL 941
Query: 312 DNYTPTTDER--YAVNVVDQPGGTKKTVVLREIP 343
TT E + V PG T +TVVL IP
Sbjct: 942 KGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 975
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C G GK+ +L S+ F +Y PT + ++ NVV
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV 48
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 255 YIGYPGDPSSAIRVTRKRRID--RKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGR---- 308
++G+ P++ T+++ I+ K +Q + N V G GKS +NS +G
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 309 --PF-SDNYTPTTDER----YAVNVVDQPG 331
PF ++ P R + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 322
N ++ VFG GKS L+ F+ F ++Y PT ++ Y
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 255 YIGYPGDPSSAIRVTRKRRID--RKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGR---- 308
++G+ P++ T+++ I+ K +Q + N V G GKS +NS +G
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 309 --PF-SDNYTPTTDER----YAVNVVDQPG 331
PF ++ P R + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 255 YIGYPGDPSSAIRVTRKRRID--RKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGR---- 308
++G+ P++ T+++ I+ K +Q + N V G GKS +NS +G
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 309 --PF-SDNYTPTTDER----YAVNVVDQPG 331
PF ++ P R + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 255 YIGYPGDPSSAIRVTRKRRID--RKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGR---- 308
++G+ P++ T+++ I+ K +Q + N V G GKS +NS +G
Sbjct: 7 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 309 --PF-SDNYTPTTDER----YAVNVVDQPG 331
PF ++ P R + +N++D PG
Sbjct: 63 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 92
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
+C V G GK+ LL S+ Y PT + Y+ NV+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM 72
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344
+F+ V G GKS LL+ F+ + F D+ T + +++ G K V L+
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG---KYVKLQIWDT 64
Query: 345 EAVAKLLS-NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAA 403
+ + S + A+ V+D + ++ T L + + ++
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGN 121
Query: 404 KDDLDS 409
K DLD+
Sbjct: 122 KKDLDA 127
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G + GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN 325
V G + GK+ LL+ F F +NY PT E Y +
Sbjct: 28 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 63
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN 325
V G + GK+ LL+ F F +NY PT E Y +
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 47
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN 325
V G + GK+ LL+ F F +NY PT E Y +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 310
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 25 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 56
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 310
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 45 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 310
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 25 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 56
>pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|3CK5|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
Length = 371
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 71 DGALSDAE-LNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALF 128
DGA+ A L F + P P ++VG R+V+E G T+AG LH L+
Sbjct: 205 DGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVRES--------GHTIAGGENLHTLY 255
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 310
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 22 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 53
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 310
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 20 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 51
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK 349
V G +GK+ L F F Y T + + + PG T+ + +I + +
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 350 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408
+ +K A + + V+D ++ S++ + V E++ + +V K DL+
Sbjct: 71 KMLDKYIYGAQGV-LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 322
++ V G GKS L F+ F D Y PT ++ Y
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY 40
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 327
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 118 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 170
+ G F+H ++ R+ W ++ F + + AD ++P ++++R +++
Sbjct: 431 VGGNPFVH--HQDRNRMVKAWEKLETFIVHDFQWTPTARHADIVLPATTSYERNDIETIG 488
Query: 171 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDL-----FSTAP-ECPWDEAPYKDAAEK 223
+ +N I +K I E L++A D + E L F+ E W ++ Y DAA++
Sbjct: 489 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFTEGKDEMGWIKSFYDDAAKQ 548
Query: 224 TALGGLSLDGFLSEWA 239
GG+ + F + WA
Sbjct: 549 GKAGGVEMPAFDAFWA 564
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 260 GDPSSAIRVTRKRRIDR---KKQQAERNVFQCFVFGPKKAGKSVLLNSFLG 307
GD SS +++ +R I+ + ++ VF+ V G K GKS LN+ +G
Sbjct: 42 GDSSSG-KLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIG 91
>pdb|3RJ1|A Chain A, Architecture Of The Mediator Head Module
pdb|3RJ1|H Chain H, Architecture Of The Mediator Head Module
pdb|3RJ1|O Chain O, Architecture Of The Mediator Head Module
Length = 131
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 133 RLETTWTVLRKFGYNNDIKLADE-----LIPYSAFKRAPDQSVELTNEAIDFLKGIFE 185
RL+ + T LRK +I+L DE L+P + K+A Q E E +D L I +
Sbjct: 74 RLDKSTTQLRK-----EIQLLDENVGTRLLPINVNKKALGQDTEKXEEQLDLLSAILD 126
>pdb|4GWP|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 115
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 133 RLETTWTVLRKFGYNNDIKLADE-----LIPYSAFKRAPDQSVELTNEAIDFLKGIFE 185
RL+ + T LRK +I+L DE L+P + K+A Q E E +D L I +
Sbjct: 58 RLDKSTTQLRK-----EIQLLDENVGTRLLPINVNKKALGQDTEKMEEQLDLLSAILD 110
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA 323
+ G + AGKS L FL + F Y P ++ Y+
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS 59
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 118 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 170
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 171 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 223
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 224 TALGGLSLDGFLSEWA 239
G+ + F + WA
Sbjct: 591 GKAAGVQMPAFDAFWA 606
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 365 FVHDSSDESSWKRATELLVEVASYGED 391
F D DE SW + +LLV YG D
Sbjct: 12 FFRDMDDEESWIKEKKLLVSSEDYGRD 38
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 118 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 170
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 171 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 223
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 224 TALGGLSLDGFLSEWA 239
G+ + F + WA
Sbjct: 591 GKAAGVQMPAFDAFWA 606
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 326
+C G GK+ +L + F +Y PT + ++ NV
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV 50
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 357 LAAC-DIAVFVHDSSDESSWKRAT--ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA 413
++AC V VH S+D +WK+A V V Y +D G V AA+ D + F +
Sbjct: 176 MSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFID 235
Query: 414 IQDSTRVF 421
++S +F
Sbjct: 236 DENSRTLF 243
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 322
+FG GKS L+ FL + F Y PT + Y
Sbjct: 33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 358 AAC-DIAVFVHDSSDESSWKRAT--ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAI 414
+AC V VH S+D +WK+A V V Y +D G V AA+ D + F +
Sbjct: 177 SACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDD 236
Query: 415 QDSTRVF 421
++S +F
Sbjct: 237 ENSRTLF 243
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 118 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 170
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 171 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 223
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 224 TALGGLSLDGFLSEWA 239
G+ + F + WA
Sbjct: 591 GKAAGVEMPAFDAFWA 606
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2IKF|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2NOM|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2NOM|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2Q0C|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0C|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0D|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0D|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0E|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0E|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0F|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0F|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0G|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
pdb|2Q0G|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
Length = 353
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 149 DIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDAD 190
D+ + L P+ + D+ +EL + +DFL FD+D
Sbjct: 234 DVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSD 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,513,339
Number of Sequences: 62578
Number of extensions: 518491
Number of successful extensions: 1831
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 198
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)