Query 014101
Match_columns 430
No_of_seqs 420 out of 2612
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 01:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 2.6E-78 5.7E-83 595.3 32.0 416 1-427 139-559 (625)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.4E-31 7.4E-36 229.7 15.0 143 282-429 6-150 (205)
3 KOG0098 GTPase Rab2, small G p 100.0 2.3E-28 4.9E-33 209.5 14.9 143 283-430 4-147 (216)
4 KOG0078 GTP-binding protein SE 100.0 3.5E-28 7.7E-33 214.2 15.4 143 282-429 9-152 (207)
5 KOG0079 GTP-binding protein H- 100.0 2.7E-28 5.8E-33 200.9 12.0 141 284-430 7-148 (198)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 5.3E-28 1.2E-32 209.1 14.3 141 284-429 4-145 (200)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.3E-28 1.4E-32 208.5 14.5 143 283-429 20-163 (221)
8 KOG0080 GTPase Rab18, small G 100.0 1.2E-27 2.6E-32 199.8 12.7 143 283-429 9-152 (209)
9 KOG0087 GTPase Rab11/YPT3, sma 99.9 4.1E-27 9E-32 206.3 13.5 143 282-429 11-154 (222)
10 KOG0394 Ras-related GTPase [Ge 99.9 4.6E-27 1E-31 201.1 12.8 145 283-429 7-156 (210)
11 KOG0093 GTPase Rab3, small G p 99.9 1.7E-26 3.8E-31 190.1 13.2 143 283-430 19-162 (193)
12 KOG0095 GTPase Rab30, small G 99.9 2.3E-25 5.1E-30 183.8 12.2 141 283-428 5-146 (213)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.4E-24 3.1E-29 195.0 17.1 140 283-429 3-157 (182)
14 cd04121 Rab40 Rab40 subfamily. 99.9 1.8E-24 3.9E-29 195.4 17.7 140 284-429 5-145 (189)
15 cd04120 Rab12 Rab12 subfamily. 99.9 1.5E-24 3.3E-29 197.8 17.1 139 286-429 1-141 (202)
16 cd04131 Rnd Rnd subfamily. Th 99.9 2.1E-24 4.6E-29 193.3 16.7 137 286-429 2-153 (178)
17 KOG0086 GTPase Rab4, small G p 99.9 6.1E-25 1.3E-29 182.0 11.8 141 283-428 7-148 (214)
18 KOG0091 GTPase Rab39, small G 99.9 5.3E-25 1.2E-29 184.5 10.6 144 282-429 5-151 (213)
19 cd04133 Rop_like Rop subfamily 99.9 3.5E-24 7.6E-29 191.4 16.2 137 286-429 2-151 (176)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.5E-24 9.7E-29 198.2 17.2 139 284-429 12-165 (232)
21 cd04122 Rab14 Rab14 subfamily. 99.9 1.3E-23 2.8E-28 185.9 17.7 140 285-429 2-142 (166)
22 cd01867 Rab8_Rab10_Rab13_like 99.9 4.4E-23 9.5E-28 182.7 17.6 141 284-429 2-143 (167)
23 cd01865 Rab3 Rab3 subfamily. 99.9 5.4E-23 1.2E-27 181.8 17.8 139 286-429 2-141 (165)
24 cd04117 Rab15 Rab15 subfamily. 99.9 4.4E-23 9.5E-28 181.8 17.1 139 286-429 1-140 (161)
25 cd01875 RhoG RhoG subfamily. 99.9 3.5E-23 7.6E-28 187.6 16.9 138 285-429 3-155 (191)
26 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4.7E-23 1E-27 188.3 17.5 142 286-429 1-146 (201)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.6E-23 1E-27 183.7 16.7 140 285-429 2-142 (172)
28 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 8.9E-23 1.9E-27 180.3 17.5 140 285-429 2-142 (166)
29 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.7E-23 1.2E-27 184.8 16.3 138 286-429 1-144 (182)
30 cd04109 Rab28 Rab28 subfamily. 99.9 8.4E-23 1.8E-27 188.7 17.6 142 286-429 1-144 (215)
31 cd04127 Rab27A Rab27a subfamil 99.9 1.3E-22 2.8E-27 181.7 18.1 142 284-429 3-155 (180)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 9.7E-23 2.1E-27 188.2 17.4 137 286-429 2-153 (222)
33 cd04116 Rab9 Rab9 subfamily. 99.9 2.1E-22 4.5E-27 178.7 18.2 144 284-429 4-149 (170)
34 PF00071 Ras: Ras family; Int 99.9 6E-23 1.3E-27 180.5 14.6 138 287-429 1-139 (162)
35 cd04119 RJL RJL (RabJ-Like) su 99.9 1.4E-22 3E-27 178.7 16.7 142 286-429 1-145 (168)
36 cd01868 Rab11_like Rab11-like. 99.9 1.8E-22 3.9E-27 178.1 17.4 141 284-429 2-143 (165)
37 PLN03071 GTP-binding nuclear p 99.9 1.3E-22 2.7E-27 187.9 17.0 140 283-429 11-150 (219)
38 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.2E-22 2.6E-27 181.5 16.3 137 286-429 2-153 (175)
39 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2E-22 4.3E-27 179.3 17.3 139 287-429 2-143 (170)
40 COG5126 FRQ1 Ca2+-binding prot 99.9 4.5E-23 9.7E-28 176.7 12.1 146 45-240 8-156 (160)
41 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.5E-22 3.3E-27 184.3 16.3 141 286-428 1-167 (202)
42 cd01866 Rab2 Rab2 subfamily. 99.9 3E-22 6.6E-27 177.6 17.8 141 284-429 3-144 (168)
43 KOG0088 GTPase Rab21, small G 99.9 1.2E-23 2.6E-28 175.4 8.0 142 283-429 11-153 (218)
44 cd04110 Rab35 Rab35 subfamily. 99.9 3.1E-22 6.7E-27 182.7 17.9 140 284-429 5-145 (199)
45 cd04136 Rap_like Rap-like subf 99.9 2.1E-22 4.5E-27 177.1 15.9 139 286-429 2-141 (163)
46 cd04111 Rab39 Rab39 subfamily. 99.9 3.1E-22 6.8E-27 184.2 17.7 141 285-429 2-144 (211)
47 cd04106 Rab23_lke Rab23-like s 99.9 3.4E-22 7.4E-27 175.6 17.1 138 286-429 1-141 (162)
48 PLN00023 GTP-binding protein; 99.9 2.1E-22 4.5E-27 192.3 16.7 144 281-426 17-189 (334)
49 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.2E-22 9.1E-27 177.0 17.4 141 285-429 2-144 (170)
50 cd04125 RabA_like RabA-like su 99.9 4E-22 8.6E-27 180.2 17.5 139 286-429 1-140 (188)
51 cd01892 Miro2 Miro2 subfamily. 99.9 1.9E-22 4.1E-27 179.2 15.1 139 282-427 1-141 (169)
52 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.9E-22 8.4E-27 174.8 16.4 139 286-429 2-140 (162)
53 cd01864 Rab19 Rab19 subfamily. 99.9 7E-22 1.5E-26 174.5 18.0 139 284-427 2-141 (165)
54 cd04175 Rap1 Rap1 subgroup. T 99.9 3.6E-22 7.9E-27 176.1 15.6 139 286-429 2-141 (164)
55 PLN03110 Rab GTPase; Provision 99.9 5.7E-22 1.2E-26 183.2 17.5 142 283-429 10-152 (216)
56 cd04176 Rap2 Rap2 subgroup. T 99.9 4.7E-22 1E-26 175.1 15.7 139 286-429 2-141 (163)
57 PTZ00369 Ras-like protein; Pro 99.9 5.6E-22 1.2E-26 179.5 16.5 141 284-429 4-145 (189)
58 cd01871 Rac1_like Rac1-like su 99.9 7.3E-22 1.6E-26 176.3 16.9 137 286-429 2-153 (174)
59 KOG0081 GTPase Rab27, small G 99.9 9E-24 2E-28 176.2 4.0 143 284-430 8-160 (219)
60 cd04144 Ras2 Ras2 subfamily. 99.9 4.5E-22 9.8E-27 180.2 15.4 140 287-429 1-141 (190)
61 KOG0027 Calmodulin and related 99.9 1.9E-22 4.1E-27 175.7 12.3 145 50-239 1-148 (151)
62 cd04140 ARHI_like ARHI subfami 99.9 8.4E-22 1.8E-26 174.1 16.4 141 286-429 2-143 (165)
63 cd04113 Rab4 Rab4 subfamily. 99.9 1E-21 2.2E-26 172.6 16.8 139 286-429 1-140 (161)
64 cd01861 Rab6 Rab6 subfamily. 99.9 1.7E-21 3.7E-26 170.9 17.1 139 286-429 1-140 (161)
65 KOG0097 GTPase Rab14, small G 99.9 4E-22 8.8E-27 163.2 11.9 142 283-429 9-151 (215)
66 cd04112 Rab26 Rab26 subfamily. 99.9 1.5E-21 3.3E-26 176.9 17.1 139 286-429 1-141 (191)
67 PLN03108 Rab family protein; P 99.9 2.2E-21 4.7E-26 178.6 17.7 141 284-429 5-146 (210)
68 smart00175 RAB Rab subfamily o 99.9 2.3E-21 5E-26 170.5 17.1 139 286-429 1-140 (164)
69 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-21 4E-26 171.4 16.3 136 286-429 1-136 (161)
70 cd00877 Ran Ran (Ras-related n 99.9 1.5E-21 3.2E-26 173.0 15.7 137 286-429 1-137 (166)
71 cd01863 Rab18 Rab18 subfamily. 99.9 2.9E-21 6.4E-26 169.6 17.1 140 286-429 1-140 (161)
72 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.2E-21 4.8E-26 170.6 16.3 140 285-429 2-142 (164)
73 cd04132 Rho4_like Rho4-like su 99.9 3E-21 6.6E-26 174.1 17.0 137 286-429 1-145 (187)
74 smart00173 RAS Ras subfamily o 99.9 2E-21 4.4E-26 171.1 15.4 139 286-429 1-140 (164)
75 cd01873 RhoBTB RhoBTB subfamil 99.9 3E-21 6.5E-26 175.3 16.9 137 285-429 2-174 (195)
76 cd04134 Rho3 Rho3 subfamily. 99.9 2.4E-21 5.1E-26 175.4 16.1 136 287-429 2-152 (189)
77 cd04101 RabL4 RabL4 (Rab-like4 99.9 5.1E-21 1.1E-25 168.6 17.6 138 286-429 1-142 (164)
78 smart00176 RAN Ran (Ras-relate 99.9 2.5E-21 5.4E-26 176.3 15.7 132 291-429 1-132 (200)
79 cd04118 Rab24 Rab24 subfamily. 99.9 4E-21 8.6E-26 174.3 17.0 138 286-429 1-144 (193)
80 cd04126 Rab20 Rab20 subfamily. 99.9 3.1E-21 6.6E-26 178.1 16.2 130 286-425 1-150 (220)
81 cd01860 Rab5_related Rab5-rela 99.9 6.8E-21 1.5E-25 167.5 17.5 139 286-429 2-141 (163)
82 KOG0083 GTPase Rab26/Rab37, sm 99.9 4.8E-23 1E-27 167.0 3.1 135 290-429 2-138 (192)
83 cd04142 RRP22 RRP22 subfamily. 99.9 5.8E-21 1.3E-25 174.0 17.0 144 286-429 1-152 (198)
84 smart00174 RHO Rho (Ras homolo 99.9 4.7E-21 1E-25 170.6 14.9 135 288-429 1-150 (174)
85 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.2E-20 2.5E-25 168.2 16.2 137 286-429 1-152 (173)
86 cd04103 Centaurin_gamma Centau 99.9 8.4E-21 1.8E-25 166.7 15.0 133 286-429 1-137 (158)
87 KOG0395 Ras-related GTPase [Ge 99.9 5.2E-21 1.1E-25 173.1 13.3 140 285-429 3-143 (196)
88 cd01862 Rab7 Rab7 subfamily. 99.9 3E-20 6.4E-25 164.8 17.5 142 286-429 1-145 (172)
89 cd04123 Rab21 Rab21 subfamily. 99.8 3.7E-20 8E-25 162.2 17.3 139 286-429 1-140 (162)
90 cd04143 Rhes_like Rhes_like su 99.8 1.9E-20 4.1E-25 176.1 16.4 141 286-429 1-149 (247)
91 cd04146 RERG_RasL11_like RERG/ 99.8 1.1E-20 2.4E-25 166.8 13.4 139 287-429 1-141 (165)
92 cd04148 RGK RGK subfamily. Th 99.8 2.9E-20 6.2E-25 172.4 16.4 138 286-429 1-141 (221)
93 cd04177 RSR1 RSR1 subgroup. R 99.8 3.3E-20 7.1E-25 164.4 15.7 139 286-429 2-142 (168)
94 cd00154 Rab Rab family. Rab G 99.8 6.6E-20 1.4E-24 159.3 16.8 139 286-429 1-140 (159)
95 PLN03118 Rab family protein; P 99.8 6.3E-20 1.4E-24 169.0 17.4 142 283-429 12-155 (211)
96 cd04135 Tc10 TC10 subfamily. 99.8 6.7E-20 1.5E-24 163.1 15.9 137 286-429 1-152 (174)
97 cd04114 Rab30 Rab30 subfamily. 99.8 2.5E-19 5.4E-24 158.6 17.3 141 284-429 6-147 (169)
98 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.5E-20 7.6E-25 163.8 11.5 133 287-429 1-138 (164)
99 cd04139 RalA_RalB RalA/RalB su 99.8 2.4E-19 5.2E-24 157.5 16.6 139 286-429 1-140 (164)
100 KOG4252 GTP-binding protein [S 99.8 4.8E-21 1E-25 163.1 4.0 141 284-430 19-160 (246)
101 cd01870 RhoA_like RhoA-like su 99.8 5.3E-19 1.1E-23 157.5 16.8 134 286-426 2-149 (175)
102 PTZ00132 GTP-binding nuclear p 99.8 5.9E-19 1.3E-23 163.0 17.3 141 282-429 6-146 (215)
103 cd04149 Arf6 Arf6 subfamily. 99.8 3.6E-19 7.8E-24 158.0 15.1 128 284-421 8-135 (168)
104 cd00876 Ras Ras family. The R 99.8 5.7E-19 1.2E-23 154.3 16.1 138 287-429 1-139 (160)
105 cd04150 Arf1_5_like Arf1-Arf5- 99.8 7.7E-19 1.7E-23 154.4 15.2 116 286-410 1-116 (159)
106 smart00177 ARF ARF-like small 99.8 6.5E-19 1.4E-23 157.4 14.7 117 284-409 12-128 (175)
107 PLN00223 ADP-ribosylation fact 99.8 5.7E-19 1.2E-23 158.6 13.5 131 283-426 15-145 (181)
108 cd04137 RheB Rheb (Ras Homolog 99.8 1.5E-18 3.2E-23 155.5 16.1 139 286-429 2-141 (180)
109 KOG0393 Ras-related small GTPa 99.8 2.2E-19 4.7E-24 159.3 9.8 139 284-429 3-157 (198)
110 cd04147 Ras_dva Ras-dva subfam 99.8 1.8E-18 4E-23 157.6 15.8 138 287-429 1-141 (198)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.5E-18 5.5E-23 154.7 16.0 131 285-421 3-134 (183)
112 PTZ00133 ADP-ribosylation fact 99.8 1.7E-18 3.7E-23 155.7 14.9 118 283-409 15-132 (182)
113 cd00157 Rho Rho (Ras homology) 99.8 2E-18 4.3E-23 152.9 14.8 137 286-429 1-151 (171)
114 cd04129 Rho2 Rho2 subfamily. 99.8 2.8E-18 6E-23 155.0 15.9 137 286-429 2-151 (187)
115 cd04158 ARD1 ARD1 subfamily. 99.8 1.9E-18 4.2E-23 153.3 14.5 127 287-423 1-127 (169)
116 cd04154 Arl2 Arl2 subfamily. 99.8 2.8E-18 6.1E-23 152.8 15.5 129 283-421 12-140 (173)
117 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.8E-18 8.3E-23 151.2 14.9 116 287-411 1-116 (167)
118 PF08477 Miro: Miro-like prote 99.8 9.6E-19 2.1E-23 145.8 10.3 114 287-406 1-119 (119)
119 cd01893 Miro1 Miro1 subfamily. 99.8 6.8E-18 1.5E-22 149.3 15.9 131 286-424 1-135 (166)
120 PF08356 EF_assoc_2: EF hand a 99.8 7.7E-19 1.7E-23 135.1 8.5 86 89-176 2-88 (89)
121 cd04157 Arl6 Arl6 subfamily. 99.8 6.4E-18 1.4E-22 148.3 14.5 118 287-410 1-119 (162)
122 KOG0028 Ca2+-binding protein ( 99.8 3.4E-18 7.5E-23 143.1 11.1 144 46-238 22-168 (172)
123 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.2E-17 2.6E-22 149.0 14.5 117 284-409 14-130 (174)
124 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.2E-17 4.7E-22 144.7 14.4 115 287-409 1-115 (160)
125 smart00178 SAR Sar1p-like memb 99.7 6.3E-17 1.4E-21 145.7 15.1 125 284-418 16-140 (184)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.7E-17 1.9E-21 140.7 14.1 116 287-411 1-116 (158)
127 cd04151 Arl1 Arl1 subfamily. 99.7 8E-17 1.7E-21 141.1 13.7 115 287-410 1-115 (158)
128 COG1100 GTPase SAR1 and relate 99.7 1.1E-16 2.3E-21 148.0 15.2 121 286-411 6-127 (219)
129 cd00879 Sar1 Sar1 subfamily. 99.7 1.9E-16 4.1E-21 143.1 16.1 130 284-423 18-147 (190)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.2E-16 2.6E-21 141.0 13.9 127 287-422 1-133 (167)
131 cd04159 Arl10_like Arl10-like 99.7 2.7E-16 5.9E-21 136.6 15.1 116 287-410 1-116 (159)
132 KOG0073 GTP-binding ADP-ribosy 99.7 2E-16 4.3E-21 133.5 13.4 136 285-429 16-156 (185)
133 TIGR02528 EutP ethanolamine ut 99.7 7.3E-17 1.6E-21 138.7 10.4 116 287-429 2-123 (142)
134 cd01878 HflX HflX subfamily. 99.7 6.6E-16 1.4E-20 141.3 15.3 122 282-410 38-168 (204)
135 cd01898 Obg Obg subfamily. Th 99.7 3.4E-16 7.4E-21 138.4 12.7 140 287-428 2-148 (170)
136 cd04105 SR_beta Signal recogni 99.7 5E-16 1.1E-20 142.1 14.1 121 287-410 2-124 (203)
137 PF00025 Arf: ADP-ribosylation 99.7 7.9E-16 1.7E-20 137.4 14.2 127 283-419 12-138 (175)
138 cd04155 Arl3 Arl3 subfamily. 99.7 1.8E-15 4E-20 134.3 15.3 117 284-409 13-129 (173)
139 TIGR03156 GTP_HflX GTP-binding 99.7 1.3E-15 2.8E-20 150.1 15.3 120 283-409 187-315 (351)
140 PTZ00184 calmodulin; Provision 99.7 7.8E-16 1.7E-20 133.1 11.7 140 49-237 3-145 (149)
141 PTZ00183 centrin; Provisional 99.7 1.2E-15 2.7E-20 133.4 12.9 141 49-238 9-152 (158)
142 KOG0031 Myosin regulatory ligh 99.7 7.7E-16 1.7E-20 128.1 10.6 136 49-237 24-162 (171)
143 cd01890 LepA LepA subfamily. 99.7 1.9E-15 4E-20 135.0 13.8 131 287-427 2-150 (179)
144 PTZ00099 rab6; Provisional 99.6 2.4E-15 5.3E-20 134.3 14.3 117 308-429 3-120 (176)
145 TIGR00231 small_GTP small GTP- 99.6 3.1E-15 6.8E-20 129.3 14.3 132 286-422 2-135 (161)
146 KOG3883 Ras family small GTPas 99.6 4.4E-15 9.5E-20 123.8 13.3 142 284-429 8-153 (198)
147 cd04171 SelB SelB subfamily. 99.6 4.9E-15 1.1E-19 129.9 13.8 112 287-410 2-119 (164)
148 cd01891 TypA_BipA TypA (tyrosi 99.6 2.2E-15 4.8E-20 136.8 11.9 127 287-422 4-146 (194)
149 KOG1673 Ras GTPases [General f 99.6 1.2E-15 2.6E-20 127.4 8.8 140 284-429 19-164 (205)
150 cd01897 NOG NOG1 is a nucleola 99.6 9.2E-15 2E-19 129.1 14.2 133 287-429 2-146 (168)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4.5E-15 9.8E-20 150.4 13.8 132 283-429 201-339 (442)
152 cd01879 FeoB Ferrous iron tran 99.6 4.6E-15 1E-19 129.4 11.8 127 290-429 1-135 (158)
153 PRK12299 obgE GTPase CgtA; Rev 99.6 7.8E-15 1.7E-19 143.5 14.6 141 285-429 158-306 (335)
154 PF02421 FeoB_N: Ferrous iron 99.6 2E-15 4.3E-20 130.8 8.1 131 286-429 1-139 (156)
155 KOG0070 GTP-binding ADP-ribosy 99.6 3.3E-15 7.1E-20 129.5 9.3 119 283-410 15-133 (181)
156 TIGR02729 Obg_CgtA Obg family 99.6 1.1E-14 2.5E-19 142.2 14.0 143 285-429 157-307 (329)
157 KOG0075 GTP-binding ADP-ribosy 99.6 3.2E-15 7E-20 123.7 7.7 134 281-426 16-149 (186)
158 TIGR00436 era GTP-binding prot 99.6 1.8E-14 3.9E-19 137.7 13.8 130 287-425 2-137 (270)
159 PRK11058 GTPase HflX; Provisio 99.6 2.7E-14 5.8E-19 144.0 14.8 121 285-409 197-323 (426)
160 cd00882 Ras_like_GTPase Ras-li 99.6 7.3E-14 1.6E-18 119.3 14.6 135 290-429 1-138 (157)
161 PF08355 EF_assoc_1: EF hand a 99.6 2E-15 4.3E-20 113.3 3.9 70 211-280 1-75 (76)
162 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 6.3E-15 1.4E-19 127.4 7.1 123 283-411 8-130 (216)
163 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 3.9E-14 8.4E-19 124.9 12.3 115 287-410 2-117 (168)
164 PRK04213 GTP-binding protein; 99.6 2.2E-14 4.8E-19 130.8 10.6 127 284-426 8-159 (201)
165 TIGR03598 GTPase_YsxC ribosome 99.5 1.3E-13 2.8E-18 123.5 14.2 131 282-424 15-161 (179)
166 KOG0071 GTP-binding ADP-ribosy 99.5 1.1E-13 2.5E-18 113.7 12.0 127 284-420 16-142 (180)
167 PRK15494 era GTPase Era; Provi 99.5 1.1E-13 2.5E-18 136.1 13.6 131 283-425 50-188 (339)
168 KOG0074 GTP-binding ADP-ribosy 99.5 7E-14 1.5E-18 115.1 9.8 119 283-409 15-133 (185)
169 PRK03003 GTP-binding protein D 99.5 1.1E-13 2.5E-18 142.3 13.6 115 284-409 37-160 (472)
170 PRK03003 GTP-binding protein D 99.5 2.7E-13 5.8E-18 139.6 15.3 116 284-409 210-336 (472)
171 PRK12297 obgE GTPase CgtA; Rev 99.5 3.1E-13 6.8E-18 135.6 15.2 138 286-428 159-304 (424)
172 COG1159 Era GTPase [General fu 99.5 2E-13 4.3E-18 127.5 11.8 119 286-412 7-131 (298)
173 PRK15467 ethanolamine utilizat 99.5 1.3E-13 2.7E-18 121.1 9.6 116 287-429 3-125 (158)
174 cd01881 Obg_like The Obg-like 99.5 1.7E-13 3.6E-18 121.7 10.4 120 290-410 1-135 (176)
175 PRK05291 trmE tRNA modificatio 99.5 2E-13 4.4E-18 139.2 12.2 118 282-410 212-336 (449)
176 KOG0030 Myosin essential light 99.5 1.7E-13 3.6E-18 112.4 8.3 143 51-238 5-149 (152)
177 PRK12296 obgE GTPase CgtA; Rev 99.5 5.9E-13 1.3E-17 135.3 13.6 144 284-429 158-318 (500)
178 PRK12298 obgE GTPase CgtA; Rev 99.5 6.8E-13 1.5E-17 132.4 13.8 135 286-425 160-305 (390)
179 cd04163 Era Era subfamily. Er 99.5 9.7E-13 2.1E-17 115.0 13.0 131 285-424 3-141 (168)
180 PRK00089 era GTPase Era; Revie 99.5 7.9E-13 1.7E-17 127.9 13.4 132 286-425 6-144 (292)
181 KOG4423 GTP-binding protein-li 99.4 2.1E-15 4.5E-20 129.8 -4.3 143 283-427 23-169 (229)
182 cd00881 GTP_translation_factor 99.4 1.1E-12 2.4E-17 117.7 13.1 114 287-409 1-128 (189)
183 TIGR00487 IF-2 translation ini 99.4 2.2E-12 4.8E-17 134.8 16.6 128 283-425 85-215 (587)
184 cd01895 EngA2 EngA2 subfamily. 99.4 1.3E-12 2.9E-17 115.2 12.7 116 285-410 2-128 (174)
185 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.3E-12 2.8E-17 113.4 12.2 114 286-410 2-122 (157)
186 PRK00454 engB GTP-binding prot 99.4 2.4E-12 5.1E-17 116.7 14.2 118 281-410 20-150 (196)
187 cd01889 SelB_euk SelB subfamil 99.4 1.1E-12 2.5E-17 118.8 11.4 115 286-409 1-134 (192)
188 TIGR01393 lepA GTP-binding pro 99.4 2.6E-12 5.7E-17 134.9 15.3 132 286-427 4-153 (595)
189 cd01850 CDC_Septin CDC/Septin. 99.4 5E-12 1.1E-16 120.8 15.6 138 285-430 4-181 (276)
190 KOG0034 Ca2+/calmodulin-depend 99.4 1.3E-12 2.8E-17 116.2 10.4 140 49-239 25-174 (187)
191 PRK09554 feoB ferrous iron tra 99.4 2.9E-12 6.3E-17 137.8 14.5 134 285-429 3-146 (772)
192 PRK00093 GTP-binding protein D 99.4 2.7E-12 5.8E-17 131.1 13.5 111 286-409 2-123 (435)
193 cd01894 EngA1 EngA1 subfamily. 99.4 1.9E-12 4.2E-17 112.4 10.7 113 289-410 1-120 (157)
194 TIGR00475 selB selenocysteine- 99.4 4.6E-12 1E-16 132.9 14.8 125 286-424 1-135 (581)
195 KOG1707 Predicted Ras related/ 99.4 2.5E-12 5.5E-17 128.7 11.8 124 283-411 7-131 (625)
196 KOG0037 Ca2+-binding protein, 99.4 1.7E-12 3.7E-17 115.0 9.2 129 56-239 56-187 (221)
197 PF09439 SRPRB: Signal recogni 99.4 9.1E-13 2E-17 116.7 7.0 120 287-410 5-127 (181)
198 TIGR03594 GTPase_EngA ribosome 99.4 5.5E-12 1.2E-16 128.6 13.7 116 284-408 171-296 (429)
199 TIGR00437 feoB ferrous iron tr 99.4 3.3E-12 7.2E-17 134.1 11.5 127 292-429 1-133 (591)
200 cd04169 RF3 RF3 subfamily. Pe 99.4 1.5E-11 3.3E-16 117.0 14.9 131 287-427 4-154 (267)
201 TIGR03594 GTPase_EngA ribosome 99.4 5.2E-12 1.1E-16 128.8 12.6 112 287-411 1-123 (429)
202 cd04168 TetM_like Tet(M)-like 99.3 7.6E-12 1.6E-16 117.0 12.2 130 287-426 1-146 (237)
203 PRK09518 bifunctional cytidyla 99.3 1E-11 2.2E-16 133.8 14.8 116 284-409 449-575 (712)
204 COG0486 ThdF Predicted GTPase 99.3 2.9E-12 6.4E-17 126.4 9.6 124 277-410 209-339 (454)
205 COG2229 Predicted GTPase [Gene 99.3 2.6E-11 5.6E-16 105.2 14.1 129 284-422 9-147 (187)
206 TIGR00491 aIF-2 translation in 99.3 5.6E-12 1.2E-16 131.6 11.9 111 287-409 6-135 (590)
207 PRK00093 GTP-binding protein D 99.3 1.4E-11 3E-16 125.9 14.0 117 284-410 172-299 (435)
208 COG1084 Predicted GTPase [Gene 99.3 2.8E-11 6E-16 114.2 14.4 125 279-410 162-295 (346)
209 COG0218 Predicted GTPase [Gene 99.3 2.7E-11 5.8E-16 107.5 13.5 129 283-426 22-166 (200)
210 COG1160 Predicted GTPases [Gen 99.3 8.1E-12 1.7E-16 123.1 10.9 113 286-409 4-126 (444)
211 cd04167 Snu114p Snu114p subfam 99.3 7.8E-12 1.7E-16 115.2 10.3 113 287-408 2-136 (213)
212 cd01896 DRG The developmentall 99.3 3.8E-11 8.2E-16 112.1 14.3 85 287-373 2-91 (233)
213 CHL00189 infB translation init 99.3 2.5E-11 5.4E-16 128.9 14.4 115 283-409 242-361 (742)
214 PRK09518 bifunctional cytidyla 99.3 2E-11 4.4E-16 131.6 12.5 115 283-409 273-397 (712)
215 PRK05306 infB translation init 99.3 2.5E-11 5.5E-16 130.0 13.1 113 283-409 288-403 (787)
216 COG2262 HflX GTPases [General 99.3 5.9E-11 1.3E-15 115.3 14.1 127 280-410 187-319 (411)
217 cd00880 Era_like Era (E. coli 99.3 2.6E-11 5.7E-16 104.6 10.6 113 290-410 1-119 (163)
218 cd01876 YihA_EngB The YihA (En 99.3 6.4E-11 1.4E-15 103.7 13.1 110 287-410 1-125 (170)
219 cd04166 CysN_ATPS CysN_ATPS su 99.3 3.5E-11 7.5E-16 110.5 11.6 130 287-426 1-166 (208)
220 PF01926 MMR_HSR1: 50S ribosom 99.3 1E-10 2.2E-15 96.9 13.1 105 287-404 1-116 (116)
221 KOG1423 Ras-like GTPase ERA [C 99.3 1.6E-11 3.5E-16 114.2 8.7 124 280-410 67-200 (379)
222 KOG0076 GTP-binding ADP-ribosy 99.3 1.1E-11 2.4E-16 106.0 6.8 119 284-410 16-141 (197)
223 PF10662 PduV-EutP: Ethanolami 99.2 5.6E-11 1.2E-15 100.8 10.6 113 287-427 3-121 (143)
224 cd04170 EF-G_bact Elongation f 99.2 9.2E-11 2E-15 112.0 13.2 129 287-427 1-147 (268)
225 cd01888 eIF2_gamma eIF2-gamma 99.2 1.2E-10 2.6E-15 106.5 12.7 114 286-410 1-152 (203)
226 smart00010 small_GTPase Small 99.2 1.4E-10 3E-15 96.7 11.6 106 286-425 1-108 (124)
227 TIGR00483 EF-1_alpha translati 99.2 1.4E-10 3.1E-15 117.9 13.9 136 282-426 4-177 (426)
228 cd01885 EF2 EF2 (for archaea a 99.2 8.6E-11 1.9E-15 108.6 10.7 113 287-408 2-138 (222)
229 PRK12317 elongation factor 1-a 99.2 8.6E-11 1.9E-15 119.6 11.7 136 282-426 3-175 (425)
230 PRK05433 GTP-binding protein L 99.2 1.8E-10 3.8E-15 121.3 14.3 132 285-426 7-156 (600)
231 COG1160 Predicted GTPases [Gen 99.2 7.2E-11 1.6E-15 116.4 10.5 118 284-410 177-304 (444)
232 PF00009 GTP_EFTU: Elongation 99.2 1.1E-10 2.4E-15 105.4 10.8 117 284-409 2-136 (188)
233 PRK10218 GTP-binding protein; 99.2 2.5E-10 5.5E-15 119.7 15.0 118 284-410 4-135 (607)
234 PRK04004 translation initiatio 99.2 1.3E-10 2.7E-15 122.0 12.6 111 286-408 7-136 (586)
235 cd01884 EF_Tu EF-Tu subfamily. 99.2 3.2E-10 6.9E-15 102.9 13.5 133 285-426 2-153 (195)
236 cd04104 p47_IIGP_like p47 (47- 99.2 7E-11 1.5E-15 107.5 9.0 112 286-409 2-121 (197)
237 TIGR01394 TypA_BipA GTP-bindin 99.2 2.3E-10 4.9E-15 120.1 14.0 115 287-410 3-131 (594)
238 PLN02964 phosphatidylserine de 99.2 1.3E-10 2.7E-15 121.2 11.9 103 50-206 136-243 (644)
239 KOG0077 Vesicle coat complex C 99.2 1.1E-10 2.3E-15 99.2 9.0 116 286-410 21-136 (193)
240 cd05022 S-100A13 S-100A13: S-1 99.2 1.4E-10 3.1E-15 90.8 8.5 70 53-128 4-76 (89)
241 cd01886 EF-G Elongation factor 99.1 9.5E-10 2.1E-14 104.8 14.5 112 287-409 1-130 (270)
242 COG0370 FeoB Fe2+ transport sy 99.1 3E-10 6.6E-15 116.9 11.4 133 286-429 4-142 (653)
243 PRK00741 prfC peptide chain re 99.1 5.1E-10 1.1E-14 115.9 13.2 134 284-427 9-162 (526)
244 KOG0044 Ca2+ sensor (EF-Hand s 99.1 4.6E-10 1E-14 100.0 11.0 138 49-237 21-172 (193)
245 KOG0036 Predicted mitochondria 99.1 4.2E-10 9.1E-15 108.2 11.3 139 49-241 6-147 (463)
246 TIGR00503 prfC peptide chain r 99.1 1.1E-09 2.4E-14 113.6 14.3 117 284-409 10-146 (527)
247 cd01883 EF1_alpha Eukaryotic e 99.1 1.1E-09 2.4E-14 101.3 12.8 114 287-409 1-151 (219)
248 KOG1489 Predicted GTP-binding 99.1 6.5E-10 1.4E-14 104.2 10.9 138 284-425 195-340 (366)
249 KOG1191 Mitochondrial GTPase [ 99.1 2.6E-10 5.6E-15 112.6 8.4 126 283-410 266-404 (531)
250 cd05027 S-100B S-100B: S-100B 99.1 6E-10 1.3E-14 87.3 8.9 68 53-126 4-78 (88)
251 KOG4223 Reticulocalbin, calume 99.1 2.1E-10 4.6E-15 107.5 7.3 149 50-237 69-225 (325)
252 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 6.5E-10 1.4E-14 102.8 10.0 117 287-410 1-126 (232)
253 PRK12735 elongation factor Tu; 99.1 2E-09 4.3E-14 108.4 14.4 134 283-425 10-162 (396)
254 TIGR00485 EF-Tu translation el 99.1 1.5E-09 3.2E-14 109.3 13.4 135 282-425 9-162 (394)
255 PRK10512 selenocysteinyl-tRNA- 99.1 2.3E-09 5E-14 113.1 14.8 126 287-425 2-137 (614)
256 CHL00071 tufA elongation facto 99.1 2E-09 4.3E-14 108.9 13.8 135 282-425 9-162 (409)
257 PRK13351 elongation factor G; 99.0 1.5E-09 3.2E-14 117.1 13.2 129 284-426 7-155 (687)
258 PLN03126 Elongation factor Tu; 99.0 3.1E-09 6.8E-14 108.8 14.5 136 281-425 77-231 (478)
259 cd05026 S-100Z S-100Z: S-100Z 99.0 1.4E-09 3E-14 86.4 9.3 70 53-128 6-82 (93)
260 KOG0072 GTP-binding ADP-ribosy 99.0 3.2E-10 7E-15 94.0 5.6 118 284-410 17-134 (182)
261 KOG4223 Reticulocalbin, calume 99.0 5E-10 1.1E-14 105.0 7.4 138 57-242 163-307 (325)
262 PRK12736 elongation factor Tu; 99.0 4.6E-09 1E-13 105.7 14.3 136 282-426 9-163 (394)
263 cd04165 GTPBP1_like GTPBP1-lik 99.0 3.7E-09 7.9E-14 98.1 12.4 113 287-410 1-153 (224)
264 smart00027 EH Eps15 homology d 99.0 2E-09 4.3E-14 86.1 9.2 69 49-126 2-71 (96)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 7.7E-09 1.7E-13 94.0 13.9 119 286-410 1-131 (196)
266 TIGR03680 eif2g_arch translati 99.0 3.2E-09 7E-14 107.3 12.2 120 284-410 3-149 (406)
267 KOG0090 Signal recognition par 99.0 2.5E-09 5.4E-14 94.9 9.6 117 287-410 40-160 (238)
268 TIGR00484 EF-G translation elo 99.0 5E-09 1.1E-13 112.8 14.0 131 284-426 9-157 (689)
269 PF13499 EF-hand_7: EF-hand do 99.0 1.1E-09 2.4E-14 81.1 6.4 61 58-125 1-66 (66)
270 COG3596 Predicted GTPase [Gene 99.0 1.7E-09 3.7E-14 100.0 8.8 122 281-410 35-163 (296)
271 PRK04000 translation initiatio 99.0 4E-09 8.6E-14 106.6 12.1 117 283-410 7-154 (411)
272 cd00213 S-100 S-100: S-100 dom 99.0 4.1E-09 8.8E-14 82.9 9.5 68 53-126 4-78 (88)
273 cd05022 S-100A13 S-100A13: S-1 99.0 5.4E-10 1.2E-14 87.5 3.8 66 175-240 5-75 (89)
274 cd01853 Toc34_like Toc34-like 98.9 2.5E-08 5.5E-13 93.8 14.4 128 277-410 23-164 (249)
275 cd05025 S-100A1 S-100A1: S-100 98.9 7.9E-09 1.7E-13 82.0 9.3 69 53-127 5-80 (92)
276 PRK00049 elongation factor Tu; 98.9 2E-08 4.4E-13 101.1 14.5 118 283-409 10-142 (396)
277 COG0536 Obg Predicted GTPase [ 98.9 1.3E-08 2.7E-13 96.9 11.9 121 287-409 161-289 (369)
278 PLN00043 elongation factor 1-a 98.9 1.9E-08 4.2E-13 102.5 14.2 136 282-426 4-183 (447)
279 PLN03127 Elongation factor Tu; 98.9 2.5E-08 5.3E-13 101.7 14.5 119 282-409 58-191 (447)
280 cd05031 S-100A10_like S-100A10 98.9 9E-09 2E-13 82.0 8.5 68 53-126 4-78 (94)
281 cd05029 S-100A6 S-100A6: S-100 98.9 1.1E-08 2.5E-13 80.1 8.9 68 53-126 6-78 (88)
282 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.3E-08 7.2E-13 94.6 13.6 122 282-409 35-167 (313)
283 COG5126 FRQ1 Ca2+-binding prot 98.9 5.8E-09 1.3E-13 89.9 7.5 65 55-126 90-155 (160)
284 COG1163 DRG Predicted GTPase [ 98.9 2.1E-08 4.5E-13 94.6 11.7 88 285-374 63-155 (365)
285 PRK12739 elongation factor G; 98.8 4.4E-08 9.6E-13 105.5 15.1 131 283-425 6-154 (691)
286 PRK05124 cysN sulfate adenylyl 98.8 3.7E-08 8.1E-13 101.2 13.8 117 283-409 25-174 (474)
287 TIGR00490 aEF-2 translation el 98.8 1.2E-08 2.6E-13 110.2 10.3 118 283-409 17-152 (720)
288 PRK05506 bifunctional sulfate 98.8 3.1E-08 6.6E-13 105.8 13.0 118 282-409 21-171 (632)
289 PTZ00183 centrin; Provisional 98.8 4.1E-08 8.9E-13 85.6 11.6 102 58-208 54-156 (158)
290 KOG0044 Ca2+ sensor (EF-Hand s 98.8 2.2E-08 4.7E-13 89.4 9.3 111 57-206 64-175 (193)
291 TIGR02034 CysN sulfate adenyly 98.8 5E-08 1.1E-12 98.6 12.8 114 286-409 1-147 (406)
292 PRK00007 elongation factor G; 98.8 7.2E-08 1.6E-12 103.8 13.8 132 283-426 8-157 (693)
293 PTZ00258 GTP-binding protein; 98.8 1E-07 2.2E-12 94.6 13.6 88 283-370 19-126 (390)
294 cd05027 S-100B S-100B: S-100B 98.8 4.5E-09 9.7E-14 82.4 3.1 65 175-239 5-78 (88)
295 cd05023 S-100A11 S-100A11: S-1 98.7 5E-08 1.1E-12 76.6 8.5 69 53-127 5-80 (89)
296 KOG0027 Calmodulin and related 98.7 6.7E-08 1.5E-12 84.0 10.2 102 56-206 43-149 (151)
297 KOG0037 Ca2+-binding protein, 98.7 6.6E-08 1.4E-12 86.1 10.0 98 48-201 108-215 (221)
298 PF13499 EF-hand_7: EF-hand do 98.7 1.7E-09 3.8E-14 80.0 -0.1 58 180-237 2-65 (66)
299 COG0532 InfB Translation initi 98.7 2E-07 4.3E-12 93.9 14.0 112 286-409 6-121 (509)
300 cd01882 BMS1 Bms1. Bms1 is an 98.7 3.7E-07 8E-12 84.8 14.5 111 282-409 36-147 (225)
301 PRK12740 elongation factor G; 98.7 1.2E-07 2.7E-12 102.0 12.9 124 291-426 1-142 (668)
302 smart00027 EH Eps15 homology d 98.7 9.2E-09 2E-13 82.3 3.2 71 171-241 3-73 (96)
303 PF14658 EF-hand_9: EF-hand do 98.7 4.6E-08 9.9E-13 70.9 6.2 62 61-128 2-65 (66)
304 cd05026 S-100Z S-100Z: S-100Z 98.7 1.4E-08 3E-13 80.6 3.4 68 174-241 6-82 (93)
305 PTZ00141 elongation factor 1- 98.7 2.8E-07 6.1E-12 94.1 13.4 118 283-408 5-158 (446)
306 cd00052 EH Eps15 homology doma 98.7 1.1E-07 2.4E-12 70.2 7.6 60 59-127 1-61 (67)
307 KOG1145 Mitochondrial translat 98.6 5.4E-07 1.2E-11 90.3 14.3 113 284-409 152-267 (683)
308 KOG3886 GTP-binding protein [S 98.6 6.6E-08 1.4E-12 86.9 6.8 120 286-410 5-131 (295)
309 cd00052 EH Eps15 homology doma 98.6 1.6E-08 3.5E-13 74.8 2.2 62 181-242 2-63 (67)
310 PF04548 AIG1: AIG1 family; I 98.6 6.1E-07 1.3E-11 82.6 13.0 137 286-428 1-157 (212)
311 KOG0410 Predicted GTP binding 98.6 1.6E-07 3.6E-12 88.4 9.2 130 277-410 170-309 (410)
312 KOG1490 GTP-binding protein CR 98.6 1.1E-07 2.4E-12 94.3 8.3 125 281-411 164-297 (620)
313 PTZ00184 calmodulin; Provision 98.6 4.1E-07 8.9E-12 78.2 11.0 100 57-205 47-147 (149)
314 cd01899 Ygr210 Ygr210 subfamil 98.6 2.2E-07 4.7E-12 90.5 10.2 83 288-370 1-110 (318)
315 PRK09602 translation-associate 98.6 3.9E-07 8.4E-12 91.4 10.9 85 286-370 2-113 (396)
316 PTZ00416 elongation factor 2; 98.6 3.3E-07 7.1E-12 100.5 11.2 117 283-408 17-157 (836)
317 cd05025 S-100A1 S-100A1: S-100 98.6 4.6E-08 9.9E-13 77.5 3.4 65 175-239 6-79 (92)
318 PRK09866 hypothetical protein; 98.6 2.5E-06 5.5E-11 88.2 16.7 80 335-421 231-316 (741)
319 TIGR02836 spore_IV_A stage IV 98.6 1.3E-06 2.8E-11 85.9 13.9 139 283-428 15-212 (492)
320 PLN00116 translation elongatio 98.5 4.4E-07 9.5E-12 99.7 11.8 118 282-408 16-163 (843)
321 cd05031 S-100A10_like S-100A10 98.5 3.9E-08 8.4E-13 78.3 2.5 68 176-243 6-82 (94)
322 PF00735 Septin: Septin; Inte 98.5 9.9E-07 2.1E-11 84.5 12.6 138 285-429 4-179 (281)
323 KOG0377 Protein serine/threoni 98.5 4.7E-07 1E-11 87.9 10.0 147 56-242 463-617 (631)
324 cd00252 SPARC_EC SPARC_EC; ext 98.5 4.3E-07 9.4E-12 74.7 8.1 65 50-125 41-106 (116)
325 PF00350 Dynamin_N: Dynamin fa 98.5 6.1E-07 1.3E-11 79.1 9.7 62 336-405 103-168 (168)
326 cd05023 S-100A11 S-100A11: S-1 98.5 7.2E-08 1.6E-12 75.7 2.9 65 175-239 6-79 (89)
327 KOG0034 Ca2+/calmodulin-depend 98.5 1.8E-06 3.8E-11 77.1 12.0 119 47-209 47-178 (187)
328 cd05030 calgranulins Calgranul 98.5 6.8E-07 1.5E-11 70.1 8.2 69 53-127 4-79 (88)
329 KOG0038 Ca2+-binding kinase in 98.5 5.6E-08 1.2E-12 80.6 1.7 56 182-237 112-174 (189)
330 cd05029 S-100A6 S-100A6: S-100 98.4 1.2E-07 2.5E-12 74.4 2.9 67 175-241 7-80 (88)
331 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.6E-07 3.4E-12 77.3 3.4 62 175-238 45-106 (116)
332 PRK09601 GTP-binding protein Y 98.4 2E-06 4.3E-11 84.6 11.6 85 286-370 3-107 (364)
333 TIGR00993 3a0901s04IAP86 chlor 98.4 4E-06 8.8E-11 87.0 13.4 124 283-409 116-250 (763)
334 PF05049 IIGP: Interferon-indu 98.4 9.5E-07 2.1E-11 86.9 8.5 115 281-407 31-153 (376)
335 PRK07560 elongation factor EF- 98.4 1.6E-06 3.6E-11 94.0 11.2 118 283-409 18-153 (731)
336 cd01900 YchF YchF subfamily. 98.4 1.5E-06 3.3E-11 82.6 9.5 81 288-370 1-103 (274)
337 smart00053 DYNc Dynamin, GTPas 98.4 5.7E-06 1.2E-10 77.2 12.7 27 284-310 25-51 (240)
338 PTZ00327 eukaryotic translatio 98.4 2.7E-06 6E-11 86.7 11.4 121 283-410 32-186 (460)
339 cd00213 S-100 S-100: S-100 dom 98.4 2.8E-07 6E-12 72.4 3.2 67 175-241 5-80 (88)
340 PRK14845 translation initiatio 98.4 2E-06 4.4E-11 94.8 10.9 102 296-409 472-592 (1049)
341 PF13833 EF-hand_8: EF-hand do 98.4 9.9E-07 2.1E-11 62.3 5.6 50 70-126 1-52 (54)
342 COG5256 TEF1 Translation elong 98.3 3.6E-06 7.8E-11 82.3 11.2 121 282-409 4-159 (428)
343 KOG3905 Dynein light intermedi 98.3 5.1E-06 1.1E-10 78.4 11.7 95 284-383 51-152 (473)
344 KOG0028 Ca2+-binding protein ( 98.3 4.7E-06 1E-10 70.7 10.3 100 58-206 70-170 (172)
345 PF00036 EF-hand_1: EF hand; 98.3 4.6E-07 9.9E-12 55.1 3.1 28 58-85 1-28 (29)
346 KOG2643 Ca2+ binding protein, 98.3 3.7E-06 7.9E-11 82.0 10.8 141 56-249 232-393 (489)
347 TIGR00157 ribosome small subun 98.3 1.1E-06 2.5E-11 82.5 7.2 76 345-429 24-101 (245)
348 COG4917 EutP Ethanolamine util 98.3 1E-06 2.2E-11 71.8 5.4 113 287-426 3-120 (148)
349 PF00036 EF-hand_1: EF hand; 98.3 3.7E-07 8E-12 55.5 1.9 27 180-206 2-28 (29)
350 cd00051 EFh EF-hand, calcium b 98.3 4.9E-06 1.1E-10 59.5 7.7 59 59-124 2-61 (63)
351 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.3E-06 9.3E-11 73.1 7.5 56 284-343 101-156 (157)
352 KOG1532 GTPase XAB1, interacts 98.2 2.2E-05 4.7E-10 72.8 11.9 28 281-308 15-42 (366)
353 COG5019 CDC3 Septin family pro 98.2 3.1E-05 6.8E-10 74.9 13.5 139 284-430 22-200 (373)
354 PF13405 EF-hand_6: EF-hand do 98.2 2E-06 4.4E-11 53.3 3.4 28 58-85 1-28 (31)
355 PF05783 DLIC: Dynein light in 98.2 1.3E-05 2.9E-10 81.7 11.2 86 285-375 25-116 (472)
356 KOG0751 Mitochondrial aspartat 98.2 5.4E-06 1.2E-10 81.7 7.9 144 51-244 27-179 (694)
357 KOG0468 U5 snRNP-specific prot 98.1 1.1E-05 2.3E-10 82.7 9.7 118 282-408 125-262 (971)
358 KOG2655 Septin family protein 98.1 4.2E-05 9.1E-10 74.5 13.4 137 285-429 21-195 (366)
359 KOG0041 Predicted Ca2+-binding 98.1 8.3E-06 1.8E-10 71.5 7.6 71 50-127 92-163 (244)
360 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 5.5E-06 1.2E-10 71.1 6.4 54 287-344 85-138 (141)
361 COG1161 Predicted GTPases [Gen 98.1 1.5E-05 3.3E-10 77.9 10.2 59 282-344 129-187 (322)
362 COG2895 CysN GTPases - Sulfate 98.1 4.3E-05 9.3E-10 73.3 12.6 135 283-427 4-176 (431)
363 cd04178 Nucleostemin_like Nucl 98.1 8.8E-06 1.9E-10 72.2 7.4 57 283-343 115-171 (172)
364 KOG0705 GTPase-activating prot 98.1 3.9E-06 8.5E-11 84.1 5.3 135 284-429 29-167 (749)
365 PF03029 ATP_bind_1: Conserved 98.1 5.4E-06 1.2E-10 77.5 5.5 71 335-410 92-171 (238)
366 KOG0041 Predicted Ca2+-binding 98.0 1.9E-06 4E-11 75.5 2.0 71 171-241 92-164 (244)
367 PRK13768 GTPase; Provisional 98.0 1.5E-05 3.3E-10 75.4 7.8 72 335-410 98-177 (253)
368 KOG1486 GTP-binding protein DR 98.0 5.2E-05 1.1E-09 69.4 10.5 89 286-376 63-156 (364)
369 PF13202 EF-hand_5: EF hand; P 98.0 5.3E-06 1.2E-10 48.6 2.6 24 59-82 1-24 (25)
370 KOG1547 Septin CDC10 and relat 98.0 4.8E-05 1E-09 69.1 9.9 138 284-429 45-221 (336)
371 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.8E-05 6E-10 75.0 9.0 58 283-344 119-176 (287)
372 cd01856 YlqF YlqF. Proteins o 98.0 1.8E-05 3.9E-10 70.2 7.1 58 283-344 113-170 (171)
373 COG0480 FusA Translation elong 97.9 4E-05 8.7E-10 81.6 10.1 117 284-410 9-143 (697)
374 COG4108 PrfC Peptide chain rel 97.9 5.6E-05 1.2E-09 74.4 10.2 128 287-427 14-164 (528)
375 TIGR03596 GTPase_YlqF ribosome 97.9 3.2E-05 6.9E-10 74.1 8.3 58 283-344 116-173 (276)
376 KOG0036 Predicted mitochondria 97.9 7.4E-05 1.6E-09 72.6 10.4 122 57-237 51-180 (463)
377 cd01859 MJ1464 MJ1464. This f 97.9 3.3E-05 7.1E-10 67.3 7.4 56 284-343 100-155 (156)
378 PF13405 EF-hand_6: EF-hand do 97.9 6.3E-06 1.4E-10 51.1 1.9 26 180-205 2-27 (31)
379 PF13202 EF-hand_5: EF hand; P 97.9 6.8E-06 1.5E-10 48.1 1.9 25 180-204 1-25 (25)
380 KOG0462 Elongation factor-type 97.9 9.4E-05 2E-09 74.7 10.9 119 284-411 59-193 (650)
381 COG0012 Predicted GTPase, prob 97.9 3.6E-05 7.8E-10 74.9 7.5 84 285-370 2-108 (372)
382 cd05024 S-100A10 S-100A10: A s 97.9 0.00013 2.8E-09 56.9 9.0 68 53-127 4-76 (91)
383 COG1217 TypA Predicted membran 97.8 0.00011 2.4E-09 72.8 10.2 130 286-426 6-153 (603)
384 COG5192 BMS1 GTP-binding prote 97.8 0.0002 4.4E-09 72.3 12.0 114 282-413 66-181 (1077)
385 COG0481 LepA Membrane GTPase L 97.8 0.00013 2.7E-09 72.6 9.9 132 285-426 9-158 (603)
386 KOG1144 Translation initiation 97.8 6.9E-05 1.5E-09 77.8 8.2 111 286-408 476-605 (1064)
387 TIGR00073 hypB hydrogenase acc 97.8 0.00015 3.3E-09 66.3 9.7 26 283-308 20-45 (207)
388 KOG1954 Endocytosis/signaling 97.8 0.00012 2.5E-09 70.6 8.9 117 286-410 59-226 (532)
389 TIGR00092 GTP-binding protein 97.8 6.8E-05 1.5E-09 73.9 7.6 83 286-370 3-108 (368)
390 cd00051 EFh EF-hand, calcium b 97.8 1.6E-05 3.4E-10 56.7 2.3 58 180-237 2-61 (63)
391 KOG2562 Protein phosphatase 2 97.7 4.6E-05 1E-09 75.1 5.8 127 63-238 284-422 (493)
392 smart00275 G_alpha G protein a 97.7 0.00023 5E-09 70.3 10.7 87 316-410 170-266 (342)
393 cd05030 calgranulins Calgranul 97.7 2.6E-05 5.6E-10 61.2 3.2 65 175-239 5-78 (88)
394 cd01855 YqeH YqeH. YqeH is an 97.7 5.8E-05 1.3E-09 68.1 5.8 56 285-343 127-189 (190)
395 KOG4251 Calcium binding protei 97.7 9E-05 1.9E-09 67.1 6.5 149 55-237 99-261 (362)
396 KOG2486 Predicted GTPase [Gene 97.7 6.4E-05 1.4E-09 69.9 5.6 113 283-409 134-262 (320)
397 COG0050 TufB GTPases - transla 97.7 0.00017 3.6E-09 67.6 8.1 133 283-427 10-164 (394)
398 PRK09435 membrane ATPase/prote 97.7 0.00036 7.7E-09 68.3 10.7 62 334-411 149-210 (332)
399 PRK12289 GTPase RsgA; Reviewed 97.7 8.3E-05 1.8E-09 73.4 6.4 54 288-344 175-234 (352)
400 KOG0031 Myosin regulatory ligh 97.7 0.00018 4E-09 60.7 7.4 64 56-126 100-164 (171)
401 KOG0458 Elongation factor 1 al 97.6 0.00046 9.9E-09 70.4 11.5 120 282-409 174-329 (603)
402 cd00066 G-alpha G protein alph 97.6 0.00026 5.5E-09 69.3 9.6 73 333-409 160-242 (317)
403 PF12763 EF-hand_4: Cytoskelet 97.6 0.00014 3E-09 58.7 6.2 68 50-127 3-71 (104)
404 KOG0030 Myosin essential light 97.6 5.8E-05 1.3E-09 62.6 4.0 61 56-124 87-148 (152)
405 KOG0377 Protein serine/threoni 97.6 0.00016 3.4E-09 70.7 7.5 65 56-126 546-614 (631)
406 TIGR00750 lao LAO/AO transport 97.6 0.00034 7.4E-09 67.9 10.0 61 334-410 127-187 (300)
407 cd01849 YlqF_related_GTPase Yl 97.6 0.00012 2.7E-09 63.7 6.3 55 284-343 99-154 (155)
408 PF03193 DUF258: Protein of un 97.6 6.6E-05 1.4E-09 65.4 4.4 59 287-348 37-101 (161)
409 KOG0082 G-protein alpha subuni 97.6 0.00067 1.5E-08 66.2 11.4 73 334-410 195-277 (354)
410 PLN02964 phosphatidylserine de 97.6 0.00027 5.8E-09 74.4 9.1 71 50-127 172-243 (644)
411 KOG2643 Ca2+ binding protein, 97.6 0.00063 1.4E-08 66.8 10.8 47 191-237 401-450 (489)
412 PF13833 EF-hand_8: EF-hand do 97.6 1.1E-05 2.5E-10 56.8 -0.9 49 191-239 1-52 (54)
413 TIGR03348 VI_IcmF type VI secr 97.6 0.00034 7.3E-09 79.9 10.3 115 287-409 113-257 (1169)
414 cd05024 S-100A10 S-100A10: A s 97.5 7.9E-05 1.7E-09 58.1 3.6 66 175-241 5-77 (91)
415 PRK12288 GTPase RsgA; Reviewed 97.5 0.00019 4E-09 70.9 6.4 56 288-346 208-269 (347)
416 KOG0038 Ca2+-binding kinase in 97.5 0.00025 5.4E-09 59.2 5.8 65 59-125 110-175 (189)
417 KOG0040 Ca2+-binding actin-bun 97.5 0.00063 1.4E-08 75.1 10.3 111 46-205 2242-2360(2399)
418 TIGR00157 ribosome small subun 97.4 0.00026 5.6E-09 66.6 6.3 56 287-346 122-183 (245)
419 KOG1491 Predicted GTP-binding 97.4 0.00035 7.5E-09 66.9 6.9 84 284-370 19-125 (391)
420 KOG1424 Predicted GTP-binding 97.4 0.00018 3.9E-09 72.2 5.0 58 283-344 312-369 (562)
421 PRK13796 GTPase YqeH; Provisio 97.4 0.00034 7.3E-09 69.8 6.4 56 286-344 161-220 (365)
422 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00044 9.6E-09 66.7 6.7 68 354-428 73-141 (287)
423 PF10591 SPARC_Ca_bdg: Secrete 97.3 6E-05 1.3E-09 61.9 0.6 59 178-237 54-113 (113)
424 PRK00098 GTPase RsgA; Reviewed 97.3 0.00043 9.3E-09 67.1 6.3 69 355-429 76-145 (298)
425 cd01851 GBP Guanylate-binding 97.3 0.0016 3.5E-08 60.4 9.8 88 283-372 5-104 (224)
426 PF14658 EF-hand_9: EF-hand do 97.3 6.3E-05 1.4E-09 54.7 0.2 57 182-238 2-62 (66)
427 KOG0461 Selenocysteine-specifi 97.3 0.0028 6E-08 60.9 11.2 121 283-413 5-140 (522)
428 cd03112 CobW_like The function 97.3 0.0012 2.7E-08 57.6 8.2 22 288-309 3-24 (158)
429 PRK12309 transaldolase/EF-hand 97.3 0.00057 1.2E-08 68.2 6.7 53 54-126 331-384 (391)
430 TIGR03597 GTPase_YqeH ribosome 97.3 0.00055 1.2E-08 68.1 6.5 57 286-345 155-215 (360)
431 COG1162 Predicted GTPases [Gen 97.2 0.0007 1.5E-08 64.5 6.2 57 287-346 166-228 (301)
432 PRK12289 GTPase RsgA; Reviewed 97.2 0.00093 2E-08 66.0 7.0 50 354-409 84-134 (352)
433 KOG4273 Uncharacterized conser 97.1 0.0014 3.1E-08 60.0 7.2 115 286-411 5-125 (418)
434 KOG0448 Mitofusin 1 GTPase, in 97.1 0.0059 1.3E-07 63.6 12.5 119 283-410 107-276 (749)
435 KOG2484 GTPase [General functi 97.1 0.00044 9.5E-09 67.5 4.1 57 283-343 250-306 (435)
436 KOG0046 Ca2+-binding actin-bun 97.1 0.0018 3.9E-08 64.9 8.3 72 48-127 10-85 (627)
437 KOG0447 Dynamin-like GTP bindi 97.1 0.0069 1.5E-07 61.4 12.3 84 332-422 410-507 (980)
438 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.00092 2E-08 57.2 5.3 65 355-427 7-73 (141)
439 PRK00098 GTPase RsgA; Reviewed 97.0 0.0012 2.5E-08 64.1 6.3 56 287-345 166-227 (298)
440 PRK12309 transaldolase/EF-hand 97.0 0.0019 4.2E-08 64.5 7.8 52 177-239 333-384 (391)
441 cd01855 YqeH YqeH. YqeH is an 97.0 0.0017 3.7E-08 58.4 6.3 64 347-421 24-87 (190)
442 KOG3859 Septins (P-loop GTPase 96.9 0.0024 5.3E-08 59.5 6.7 118 284-409 41-190 (406)
443 KOG4251 Calcium binding protei 96.9 0.013 2.8E-07 53.4 11.1 172 60-237 143-342 (362)
444 KOG1143 Predicted translation 96.9 0.0038 8.2E-08 60.5 8.1 135 285-426 167-337 (591)
445 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.0021 4.5E-08 62.0 6.4 59 286-347 162-226 (287)
446 PRK12288 GTPase RsgA; Reviewed 96.7 0.0045 9.8E-08 61.2 7.4 68 356-429 117-186 (347)
447 TIGR03597 GTPase_YqeH ribosome 96.7 0.0033 7.2E-08 62.6 6.4 74 342-426 48-125 (360)
448 TIGR01425 SRP54_euk signal rec 96.7 0.024 5.1E-07 57.4 12.4 67 334-410 183-254 (429)
449 COG3276 SelB Selenocysteine-sp 96.7 0.02 4.3E-07 57.1 11.4 115 287-411 2-119 (447)
450 cd01859 MJ1464 MJ1464. This f 96.6 0.0027 5.8E-08 55.1 4.6 49 354-409 7-55 (156)
451 KOG4065 Uncharacterized conser 96.6 0.0052 1.1E-07 49.3 5.6 73 48-124 60-142 (144)
452 COG3523 IcmF Type VI protein s 96.6 0.0049 1.1E-07 69.0 7.4 114 287-409 127-270 (1188)
453 COG5257 GCD11 Translation init 96.6 0.0085 1.8E-07 57.2 7.9 133 283-422 8-170 (415)
454 cd03115 SRP The signal recogni 96.6 0.024 5.2E-07 50.0 10.6 82 334-428 83-169 (173)
455 KOG3887 Predicted small GTPase 96.5 0.0039 8.4E-08 57.0 5.1 122 286-410 28-150 (347)
456 KOG0460 Mitochondrial translat 96.5 0.017 3.7E-07 55.5 9.5 138 282-427 51-206 (449)
457 smart00054 EFh EF-hand, calciu 96.5 0.0029 6.2E-08 37.0 2.8 28 58-85 1-28 (29)
458 PRK14722 flhF flagellar biosyn 96.4 0.028 6E-07 55.9 10.9 22 286-307 138-159 (374)
459 COG1703 ArgK Putative periplas 96.4 0.044 9.5E-07 52.1 11.4 24 283-306 49-72 (323)
460 PF05621 TniB: Bacterial TniB 96.4 0.0067 1.4E-07 58.0 5.9 112 284-404 60-189 (302)
461 PRK12727 flagellar biosynthesi 96.3 0.037 7.9E-07 57.2 11.3 23 285-307 350-372 (559)
462 PRK13695 putative NTPase; Prov 96.3 0.02 4.3E-07 50.7 8.4 22 286-307 1-22 (174)
463 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0014 3E-08 53.8 0.9 64 51-123 48-112 (113)
464 PF02492 cobW: CobW/HypB/UreG, 96.3 0.0054 1.2E-07 54.7 4.6 60 358-425 112-171 (178)
465 PF12763 EF-hand_4: Cytoskelet 96.3 0.00092 2E-08 53.9 -0.4 69 172-241 4-72 (104)
466 KOG2485 Conserved ATP/GTP bind 96.3 0.0074 1.6E-07 57.4 5.6 64 280-344 138-206 (335)
467 PF06858 NOG1: Nucleolar GTP-b 96.3 0.015 3.3E-07 41.1 5.7 43 360-406 14-58 (58)
468 KOG0467 Translation elongation 96.3 0.012 2.6E-07 62.0 7.4 114 283-408 7-137 (887)
469 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.0057 1.2E-07 53.2 4.4 49 355-410 4-54 (157)
470 KOG0751 Mitochondrial aspartat 96.2 0.013 2.8E-07 58.5 6.9 65 180-244 181-248 (694)
471 PRK11537 putative GTP-binding 96.1 0.03 6.4E-07 54.8 9.0 22 287-308 6-27 (318)
472 COG1618 Predicted nucleotide k 96.1 0.032 6.9E-07 48.3 7.9 25 283-307 3-27 (179)
473 KOG2423 Nucleolar GTPase [Gene 96.1 0.0067 1.4E-07 59.3 4.1 127 240-374 253-389 (572)
474 TIGR00064 ftsY signal recognit 96.0 0.046 9.9E-07 52.2 9.8 22 285-306 72-93 (272)
475 smart00054 EFh EF-hand, calciu 96.0 0.0067 1.4E-07 35.4 2.7 27 180-206 2-28 (29)
476 PF13207 AAA_17: AAA domain; P 96.0 0.0054 1.2E-07 50.6 2.9 22 287-308 1-22 (121)
477 cd03222 ABC_RNaseL_inhibitor T 96.0 0.049 1.1E-06 48.5 9.1 89 286-387 26-119 (177)
478 COG1116 TauB ABC-type nitrate/ 95.9 0.0057 1.2E-07 56.7 3.0 24 287-310 31-54 (248)
479 COG5258 GTPBP1 GTPase [General 95.9 0.043 9.3E-07 53.7 8.9 135 282-423 114-286 (527)
480 PRK08118 topology modulation p 95.9 0.0064 1.4E-07 53.6 3.2 23 286-308 2-24 (167)
481 PRK10416 signal recognition pa 95.9 0.048 1E-06 53.3 9.3 23 285-307 114-136 (318)
482 PF09279 EF-hand_like: Phospho 95.8 0.03 6.4E-07 43.1 6.2 66 58-125 1-67 (83)
483 KOG0046 Ca2+-binding actin-bun 95.8 0.0067 1.5E-07 61.0 3.1 66 171-237 12-82 (627)
484 KOG4666 Predicted phosphate ac 95.8 0.022 4.7E-07 54.1 6.2 136 49-237 218-356 (412)
485 PRK14721 flhF flagellar biosyn 95.8 0.046 1E-06 55.2 9.0 22 286-307 192-213 (420)
486 cd01849 YlqF_related_GTPase Yl 95.8 0.016 3.4E-07 50.3 5.0 42 361-409 1-43 (155)
487 PRK07261 topology modulation p 95.7 0.008 1.7E-07 53.2 3.1 22 287-308 2-23 (171)
488 COG1419 FlhF Flagellar GTP-bin 95.7 0.11 2.4E-06 51.7 11.1 66 334-409 282-352 (407)
489 COG0563 Adk Adenylate kinase a 95.7 0.0084 1.8E-07 53.5 3.0 23 286-308 1-23 (178)
490 PF13671 AAA_33: AAA domain; P 95.6 0.008 1.7E-07 51.1 2.7 20 288-307 2-21 (143)
491 COG1126 GlnQ ABC-type polar am 95.6 0.013 2.8E-07 53.1 3.9 25 287-311 30-54 (240)
492 COG0194 Gmk Guanylate kinase [ 95.5 0.01 2.2E-07 52.6 2.7 24 286-309 5-28 (191)
493 COG0523 Putative GTPases (G3E 95.5 0.17 3.8E-06 49.4 11.5 58 359-425 116-174 (323)
494 KOG0464 Elongation factor G [T 95.5 0.0029 6.3E-08 62.0 -0.8 132 286-427 38-185 (753)
495 COG1136 SalX ABC-type antimicr 95.5 0.011 2.4E-07 54.4 3.0 24 287-310 33-56 (226)
496 cd03110 Fer4_NifH_child This p 95.4 0.084 1.8E-06 46.8 8.6 84 333-429 92-175 (179)
497 cd00009 AAA The AAA+ (ATPases 95.4 0.1 2.2E-06 43.5 8.6 24 286-309 20-43 (151)
498 PF13555 AAA_29: P-loop contai 95.4 0.016 3.5E-07 41.9 2.9 20 287-306 25-44 (62)
499 PF09547 Spore_IV_A: Stage IV 95.4 0.66 1.4E-05 46.5 15.0 138 284-428 16-212 (492)
500 cd02036 MinD Bacterial cell di 95.3 0.26 5.7E-06 43.2 11.4 82 335-427 64-145 (179)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=2.6e-78 Score=595.32 Aligned_cols=416 Identities=57% Similarity=0.947 Sum_probs=383.6
Q ss_pred ChhhhcccchhhhhhhhccccCCChhHHHHHhhhccccCCCCccccccCCccHHHHHHHHHHHHhhcCCCCCccCHHHHH
Q 014101 1 MMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSDAELN 80 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~ 80 (430)
|+|||++|++||+|||||||+..|++|+||+|||||+||++|||++..++|+|.++++|.|||.++|.|+||.+|..||+
T Consensus 139 ~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln 218 (625)
T KOG1707|consen 139 TLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELN 218 (625)
T ss_pred HHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCCcCHHhHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccC-CC
Q 014101 81 DFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELI-PY 159 (430)
Q Consensus 81 ~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~gi~~~eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~-~~ 159 (430)
.++++|||.|++..+++.++..+++..|+++...|++..+||.++.+|++++++|++|++||+|||+|+|.+.++++ |
T Consensus 219 ~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p- 297 (625)
T KOG1707|consen 219 DFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPP- 297 (625)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCc-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhhh
Q 014101 160 SAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+..+++++.++++.+++||..+|..||.|+||.++.+||+.+|+.+|..||....+......+..|++++++|++.|.
T Consensus 298 -~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 298 -RLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred -cccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999976677777778999999999999999
Q ss_pred hhhhcCHHHHHHHHHHhcCCCC---cchhhHHhhHHHHHHhhhhccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCC
Q 014101 240 LMTLLDPARSVENLIYIGYPGD---PSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP 316 (430)
Q Consensus 240 ~~~~~~~~~~~~~l~y~G~~~~---~~~a~~~t~~r~~~~~~~~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~ 316 (430)
+++++|+..++++|.|+||+.+ +.++++++|+|+++++.++..++++++.|+|+.++|||.|++.|+++.+...+..
T Consensus 377 L~Tlld~~~t~~~L~Ylgf~~~~~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~ 456 (625)
T KOG1707|consen 377 LMTLLDPRRTLEYLAYLGFPTDAGSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTG 456 (625)
T ss_pred HHhhccHHHHHHHHHhcCCcccccccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhcccccccccc
Confidence 9999999999999999999976 8999999999999999999999999999999999999999999999999887778
Q ss_pred CccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCC
Q 014101 317 TTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEV 396 (430)
Q Consensus 317 t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~ 396 (430)
+....+.++.+... +..+++++.+.|......+. ... ..||+++++||++++.||..+...+....... .+
T Consensus 457 ~~~~~~avn~v~~~-g~~k~LiL~ei~~~~~~~l~-~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~-----~~ 527 (625)
T KOG1707|consen 457 TTKPRYAVNSVEVK-GQQKYLILREIGEDDQDFLT-SKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDLY-----KI 527 (625)
T ss_pred CCCCceeeeeeeec-cccceEEEeecCcccccccc-Ccc--ceeeeEEEecccCCchHHHHHHHHHHHhhhcc-----CC
Confidence 88889999999998 67778888777765333232 223 78999999999999999998887766554432 79
Q ss_pred cEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCc
Q 014101 397 PCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 427 (430)
Q Consensus 397 PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~ 427 (430)
|+++|++|+|+.+.+ ....+..++|++++++
T Consensus 528 Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~ 559 (625)
T KOG1707|consen 528 PCLMVATKADLDEVPQRYSIQPDEFCRQLGLP 559 (625)
T ss_pred ceEEEeeccccchhhhccCCChHHHHHhcCCC
Confidence 999999999998864 2233449999999986
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-31 Score=229.72 Aligned_cols=143 Identities=20% Similarity=0.340 Sum_probs=135.5
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
-.+.+||+|+|++|||||+|+.||..+.|...+..|+|+++..++++++|...+++||||+|+++|+++. ..|||+|+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit--~syYR~ah 83 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH 83 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh--HhhccCCC
Confidence 3577999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCc-cc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV-LY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~-~f 429 (430)
+||+|||+|+.+||..+..|+.++.++... ++|.+|||||||+.+.+ ++.++++.|+.+++++ |+
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL 150 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence 999999999999999999999999998765 78999999999999975 8899999999999998 54
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-28 Score=209.52 Aligned_cols=143 Identities=16% Similarity=0.236 Sum_probs=135.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
.+.+|++++|+.|||||+|+.||+...|.+.+..|+|.++..+.+.+++...++++|||+|++.|+++. ..||+.+-+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~--~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT--RSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH--HHHhccCcc
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCcccC
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~fk 430 (430)
+++|||+++++||..+..|+.++.+... +++.++|+|||+||..++ |+.+++++||+++|+.|++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~---~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSN---ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcC---CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh
Confidence 9999999999999999999999998863 388999999999999875 9999999999999998863
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.5e-28 Score=214.16 Aligned_cols=143 Identities=15% Similarity=0.257 Sum_probs=135.8
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
....+||+++|++|||||+++.+|..+.|...+..|+|.+|..+++.+++....+++|||+|+++|+.+. ..|++.|+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~--~sYyrgA~ 86 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAM 86 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH--HHHHhhcC
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
++++|||+++..||+++..|++.+..+... .+|++|||||+|+..++ |+.+.++++|.++|++|+
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~ 152 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFF 152 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCeEE
Confidence 999999999999999999999999988654 79999999999999864 889999999999999987
No 5
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.7e-28 Score=200.92 Aligned_cols=141 Identities=21% Similarity=0.318 Sum_probs=133.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
+.+|.+|+|++|||||||+.+|..+.|+..|..|+|.++.+++++++|..+.++|||++|+|+|+.+. ..+++..+++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit--styyrgthgv 84 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT--STYYRGTHGV 84 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH--HHHccCCceE
Confidence 34688999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCcccC
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~fk 430 (430)
|+|||+++.+||.++.+|++++..++. .+|-|+||||+|.++++ |..++|+.||..+|+.+|.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCchhee
Confidence 999999999999999999999999874 69999999999999987 6799999999999999873
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.3e-28 Score=209.10 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=132.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|+++||||||+.||..+.|.....||+|..|..+++.+++..+++.||||+|+|+|+++. +.|||+|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla--pMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA--PMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc--cceecCCcEE
Confidence 46899999999999999999999999999888999999999999999889999999999999999998 8999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
|+|||+++.+||..++.|++++.+... +++-+.|||||+||.+ ++|..++++.||++.|+.||
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEE
Confidence 999999999999999999999998764 3677889999999999 46999999999999999987
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.3e-28 Score=208.49 Aligned_cols=143 Identities=18% Similarity=0.290 Sum_probs=133.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
-..+||+++|+.+|||||||+||+.+.|..+|.+|+|.+|-.+++.+.+....+++|||+|+|+|+.+. +.|++++.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--psY~Rds~v 97 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSV 97 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--hhhccCCeE
Confidence 344899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+|+|||+++..||++...|++.+.+..+.. ++-++|||||.||.+++ ++.++++..|+++|+.|+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFI 163 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEE
Confidence 999999999999999999999999887652 47789999999999874 889999999999999775
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=199.83 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=132.8
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||++||.+|||||||+.+|+.+.|.+....|+|.+|.++.+.++|...++-||||+|+|+|+.+. +.||+.|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--pSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--PSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC--HhHhccCce
Confidence 346899999999999999999999999999997789999999999999999999999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+|+|||++.+++|..+..|++++..+... +++-.++||||+|...++ |+.+++.+||++|++.|+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn--~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi 152 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTN--PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI 152 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCC--ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence 99999999999999999999999998754 477789999999998654 889999999999998775
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-27 Score=206.34 Aligned_cols=143 Identities=19% Similarity=0.259 Sum_probs=134.9
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
-.+.+||+++|+++||||-|+.||..++|...+.+|+|.++..+.+.+++...+.+||||+|+++|+.+. ..||+.|.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit--SaYYrgAv 88 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT--SAYYRGAV 88 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc--chhhcccc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999988 79999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
++++|||++.+.+|+++.+|+.+++..... +++++|||||+||.+.+ |..++++.+|++.+..|+
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 999999999999999999999999988654 89999999999999965 889999999999998775
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=201.15 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=133.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|++|||||||+++|.+.+|...+..|+|.++..+.+.+++....++||||+|+++|.++. ..+||.+|+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--VAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--cceecCCce
Confidence 567899999999999999999999999999999999999999999999888899999999999999998 789999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCC-CCCcEEEEEeCCCCCC---ccCcHHHHHHHHHHhC-Cccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTG-FEVPCLIVAAKDDLDS---FAMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~-~~~PiilVgnK~Dl~~---~~v~~~~~~~~~~~~g-~~~f 429 (430)
.++|||+++++||+.+..|-+++..+..... ...|+||+|||+|+.+ ++|+...|++||++.| +|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeE
Confidence 9999999999999999999999887755433 4689999999999977 5689999999999987 7887
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-26 Score=190.05 Aligned_cols=143 Identities=15% Similarity=0.286 Sum_probs=133.8
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+|++|+|++.||||||+.++.++.|.+.+..|.|.++.++++.-.....++++|||+|+|+++.+. -.+++.+++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT--TayyRgamg 96 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT--TAYYRGAMG 96 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH--HHHhhccce
Confidence 467899999999999999999999999999999999999999998887788999999999999999998 789999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCcccC
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~fk 430 (430)
+|+|||++|.+||..++.|...+..++-. ++|+|+||||||+.+++ ++.+.+..+++++|+.||.
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 99999999999999999999999998654 89999999999999987 6789999999999999873
No 12
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-25 Score=183.79 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=129.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|..|||||+|+++|..+-|++....|+|+++.++++++.|...+++||||+|+++|+++. ..|++.|++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit--qsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT--QSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH--HHHhhhcce
Confidence 346899999999999999999999999999998999999999999999999999999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCcc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~ 428 (430)
+|+|||++-..||+-+.+|+.++..+... ++--|+||||.|+.++ +++.+.+++|++.+.+-|
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 99999999999999999999999998643 5667999999999997 488899999998865433
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=1.4e-24 Score=195.01 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=123.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|++|||||||+++|..+.+...+.||++..+. +.+.+++....+.+|||+|++.|..+. ..+++++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~--~~~~~~ad~ 79 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 79 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhh--hhhcCCCCE
Confidence 45689999999999999999999999999888899987665 567788778889999999999999887 788999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-------------ccCcHHHHHHHHHHhCC-c
Q 014101 363 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-V 427 (430)
Q Consensus 363 vilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-------------~~v~~~~~~~~~~~~g~-~ 427 (430)
+++|||++++.||+++ ..|+..+.... +++|++|||||+||.+ ..++.++++++|+++|+ +
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999997 78999988764 3689999999999964 24889999999999996 7
Q ss_pred cc
Q 014101 428 LY 429 (430)
Q Consensus 428 ~f 429 (430)
||
T Consensus 156 ~~ 157 (182)
T cd04172 156 YI 157 (182)
T ss_pred EE
Confidence 76
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.92 E-value=1.8e-24 Score=195.39 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=126.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|..|||||||+++|..+.+...+.++.+.++....+.+++....+.+||++|++.+..++ ..+++++|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~--~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF--RSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhcCCCEE
Confidence 46899999999999999999999999888877888888887888888777888999999999999988 7889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||++++.||+++..|+.++.... +++|+||||||+|+... .++.++++++|++++++||
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999997654 37999999999999764 5788999999999999886
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.92 E-value=1.5e-24 Score=197.81 Aligned_cols=139 Identities=14% Similarity=0.260 Sum_probs=124.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
++|+++|.+|||||||+++|..+.|...+.+|++.++..+.+.+++....+.+||++|++.|..++ ..+++++|++|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--HHHhcCCCEEEE
Confidence 378999999999999999999999998888999999988889988777888999999999999998 789999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHh-CCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFL-VMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~-g~~~f 429 (430)
|||+++++||+.+..|+..+..... .++|+++||||+|+.. +++..++++++++++ ++.||
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~---~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFC 141 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEE
Confidence 9999999999999999998876542 3799999999999975 457888999999886 67665
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=2.1e-24 Score=193.32 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=121.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+|||+|++.+..+. +.+++++|++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR--PLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcc--hhhcCCCCEEEE
Confidence 79999999999999999999999999888899887765 567788777888999999999998887 688999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-------------ccCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-------------~~v~~~~~~~~~~~~g~-~~f 429 (430)
|||+++++||+.+ ..|+..+.... +++|++|||||+||.+ .+++.++++++|+++|+ +||
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEE
Confidence 9999999999996 78999988764 3689999999999964 24789999999999997 675
No 17
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.1e-25 Score=182.04 Aligned_cols=141 Identities=20% Similarity=0.322 Sum_probs=131.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+|++++|+.|.|||+|+++|+.+++...+..|+|.+|..+.+.+.+..++++||||+|+++|++.. +.||+.|-+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt--RsYYRGAAG 84 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAAG 84 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH--HHHhccccc
Confidence 456899999999999999999999999999998999999999999999999999999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCcc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~ 428 (430)
.++|||+++++||+.+..|+..++.... +++-+|++|||.||.+. +|+..++.+||++.++.+
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs---~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCC---CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 9999999999999999999999887654 37889999999999886 488999999999988754
No 18
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=5.3e-25 Score=184.49 Aligned_cols=144 Identities=21% Similarity=0.263 Sum_probs=128.4
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
..+.++++|||++-||||||++.|+.++++.-++||.|+++....+++. |...++++|||+|+++|+++. ..||+++
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsit--ksyyrns 82 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT--KSYYRNS 82 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH--HHHhhcc
Confidence 3467899999999999999999999999999999999999998888874 566788999999999999998 8999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCC-CcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFE-VPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~-~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
-++++|||++|++||+.+..|+++...+.. +|. +-+.|||+|+||..+ +|+.++++.||..+|+.|+
T Consensus 83 vgvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FV 151 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFV 151 (213)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEE
Confidence 999999999999999999999988766543 123 446799999999886 4899999999999999886
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=3.5e-24 Score=191.38 Aligned_cols=137 Identities=19% Similarity=0.309 Sum_probs=121.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+.+|..+.|...+.||++..+. ..+.+++....+.+|||+|++.+..+. ..+++++|++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR--PLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccc--hhhcCCCcEEEE
Confidence 69999999999999999999999999888899987764 556777777888999999999999887 779999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-----------cCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-----------AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-----------~v~~~~~~~~~~~~g~-~~f 429 (430)
|||+++++||+.+ ..|+..+.... +++|++|||||+|+.++ .+..++++++++++++ +||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999998 68999987654 26999999999999664 3778999999999998 465
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=4.5e-24 Score=198.15 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=123.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||+++|.++.|...+.||++..+. ..+.+++....+.+|||+|++.|..+. ..+++++|++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~--~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHH--HHHcCCCcEE
Confidence 4579999999999999999999999999999899988775 457788788889999999999999887 6899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-------------ccCcHHHHHHHHHHhCC-cc
Q 014101 364 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-VL 428 (430)
Q Consensus 364 ilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-------------~~v~~~~~~~~~~~~g~-~~ 428 (430)
++|||+++++||+.+ ..|+..+.... +++|+||||||+|+.+ ..++.++++++|+++|+ .|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999984 88999988754 2689999999999964 35889999999999998 47
Q ss_pred c
Q 014101 429 Y 429 (430)
Q Consensus 429 f 429 (430)
|
T Consensus 165 ~ 165 (232)
T cd04174 165 L 165 (232)
T ss_pred E
Confidence 5
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=1.3e-23 Score=185.86 Aligned_cols=140 Identities=15% Similarity=0.279 Sum_probs=124.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+.+....+.+||++|++.+..++ ..+++++|+++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--RSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEEE
Confidence 4799999999999999999999999988887888888887788888767788999999999999887 68899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+|||+++++||+.+..|+..+..... ++.|+++||||+|+...+ ++.+++.++++..+++||
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTN---PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEE
Confidence 99999999999999999998876543 368999999999998754 678899999999988876
No 22
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=4.4e-23 Score=182.71 Aligned_cols=141 Identities=16% Similarity=0.252 Sum_probs=125.3
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.+..+...+.||.+.++....+.+++....+.+||++|++.+..+. ..+++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhCCCCEE
Confidence 45899999999999999999999999999888999988888888888767788999999999988887 6888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||..+..|+..+..... .++|+++||||+|+.+. ++..+++.++++.++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHAS---EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999887542 27899999999999865 4677889999999988875
No 23
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.91 E-value=5.4e-23 Score=181.77 Aligned_cols=139 Identities=14% Similarity=0.262 Sum_probs=122.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.++++...+.||.+.++....+..++....+.+||++|++.+..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--TAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHccCCcEEEE
Confidence 799999999999999999999999988888899888877777777666788999999999998887 788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
|||++++++|+.+..|+..+...... ++|+++||||+|+.+.+ +..+++.++++.+++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999998765432 68999999999997754 667889999999988776
No 24
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.91 E-value=4.4e-23 Score=181.75 Aligned_cols=139 Identities=17% Similarity=0.259 Sum_probs=123.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.||.+.++....+.+++....+.+||++|++.+..+. ..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--KQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--HHHhcCCcEEEE
Confidence 489999999999999999999999988888999988887888888666778899999999998887 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+.+..|+..+..... .++|+++||||+|+.+. ++..+++..+++.++++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAP---EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999876542 26899999999999765 4778999999999998876
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.91 E-value=3.5e-23 Score=187.65 Aligned_cols=138 Identities=21% Similarity=0.296 Sum_probs=119.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|++|||||||+++|..+.|...+.||++..+. ..+.+++....+.+|||+|++.++.++ ..+++++|++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~--~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLR--TLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhccCCCEEE
Confidence 379999999999999999999999998888899987664 456677777888999999999999988 78899999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhC-Cccc
Q 014101 365 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g-~~~f 429 (430)
+|||+++++||+.+. .|+..+.... +++|++|||||+||.+. .+..++++++|++++ ++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999997 5888776543 27999999999999653 256789999999998 4676
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=4.7e-23 Score=188.34 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=123.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+++|++|||||||+++|+++.+...+.||++.++....+.++ +....+.+||++|++.+..++ ..+++++|+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--RVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--HHHhCCCCEEE
Confidence 589999999999999999999999988888999988888888887 677888999999999999888 78899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhC-Cccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~-~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g-~~~f 429 (430)
+|||+++++||+.+..|+..+...... ...++|++|||||+|+.+ ..+..+++.++++.++ .+||
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 999999999999999999888653211 123789999999999985 4577899999999998 4554
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=4.6e-23 Score=183.69 Aligned_cols=140 Identities=15% Similarity=0.256 Sum_probs=121.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|.+|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|++.+..++ ..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMR--DQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHh--HHHhhcCCEEE
Confidence 379999999999999999999999998888888876564 456777667788899999999999988 78899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
+|||++++.||..+..|+..+...... +++|+++||||+|+.+. +++.+++.++++.++++||
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 142 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLT--EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFF 142 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEE
Confidence 999999999999999998887764322 37999999999999764 4778899999999999886
No 28
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.90 E-value=8.9e-23 Score=180.35 Aligned_cols=140 Identities=20% Similarity=0.320 Sum_probs=124.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|++|||||||++++.++.+...+.+|.+.++....+.+.+....+.+||++|++.+..++ ..+++.+|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhCcCCEEE
Confidence 4799999999999999999999999988888898888888888888667788999999999998887 67889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
+|||+++++||..+..|+..+..... ++.|+++|+||+|+... .+..+++.++++.++++|+
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999877542 26899999999999764 4667899999999998876
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=5.7e-23 Score=184.78 Aligned_cols=138 Identities=14% Similarity=0.218 Sum_probs=119.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.||.+.++..+.+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--PLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--HHHCcCCCEEEE
Confidence 589999999999999999999999998888999998888888888777888999999999999887 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-----c-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-----F-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-----~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+++..|+..+...... .+| ++||||+|+.. . +...++++++++.+++++|
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 99999999999999999998775432 467 68899999952 1 2235788899999998775
No 30
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=8.4e-23 Score=188.69 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=124.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC-CeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+++|++|||||||+++|.++.+...+.||.+.++..+.+.+++ ....+.+||++|++.+..++ ..+++++|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML--DKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH--HHHhhcCCEEE
Confidence 5899999999999999999999999988889999988888888875 36788899999999998888 67899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
+|||+++++||+.+..|+..+.........++|+++|+||+|+.+ +++..+++.++++.++++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999998876532223578999999999975 45778899999999988765
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.90 E-value=1.3e-22 Score=181.73 Aligned_cols=142 Identities=11% Similarity=0.163 Sum_probs=122.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC----------CCeEEEEEEeCCChhHHHhhhcc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP----------GGTKKTVVLREIPEEAVAKLLSN 353 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~----------~~~~~~~i~d~~G~e~~~~~~~~ 353 (430)
+.+||+++|++|||||||++++.++.+...+.+|++.++....+.+. +....+.+||++|++.+..++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-- 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT-- 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH--
Confidence 45899999999999999999999999988888899888876666553 345778899999999999887
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
..+++++|++++|||+++++||..+..|+..+...... +++|+++||||+|+.+. .+..+++.++++++++++|
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC--ENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 78899999999999999999999999999998765322 36899999999999874 4778899999999998876
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.90 E-value=9.7e-23 Score=188.21 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=118.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+|+|++|||||||+++|.++.|...+.||++..+. ..+.+++....+.+||++|++.|..+. +.+++++|++++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~--~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR--PLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh--HHhccCCCEEEE
Confidence 79999999999999999999999999889899988775 466777777888899999999999887 788999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~-~~f 429 (430)
|||+++++||+.+. .|...+.... +++|+||||||+|+.+. +++.++++.+++++|+ +||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFC----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEE
Confidence 99999999999985 5666665543 37999999999999652 3678899999999996 776
No 33
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=2.1e-22 Score=178.68 Aligned_cols=144 Identities=13% Similarity=0.202 Sum_probs=125.1
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++....+.+||++|++.+..++ ..+++.+|++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 81 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--TPFYRGSDCC 81 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--HHHhcCCCEE
Confidence 46899999999999999999999999988887888888877788888777888999999999999888 6789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCC-CCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC-ccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDT-GFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~-~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~-~~f 429 (430)
++|||+++++||+.+..|+..+....... ..++|+++|+||+|+....+..+++++++++++. ++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEE
Confidence 99999999999999999999887654221 1368999999999998767888999999999885 444
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=6e-23 Score=180.54 Aligned_cols=138 Identities=22% Similarity=0.358 Sum_probs=126.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||+++|.++.+...+.+|.+.+.....+..++....+.+||++|++.+..+. ...++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--DIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--HHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 79999999999999999999999999998999889888899998888889999999999988876 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
||+++++||+.+..|+..+...... ++|++|||||+|+.+ +.++.+++++++++++++|+
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~ 139 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYF 139 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEE
T ss_pred ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhCCEEE
Confidence 9999999999999999999988752 689999999999997 56889999999999998886
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.90 E-value=1.4e-22 Score=178.71 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=124.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++++++.+...+.|+.+.++..+.+.+++....+.+||++|.+.+..+. ..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR--NEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH--HHHhccCCEEEE
Confidence 589999999999999999999999988888999998888888888778888999999999888877 778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCC--CCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDT--GFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~--~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++++|..+..|+..+....... ..+.|+++|+||+|+.+ ..+..++++.++++.++++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988764320 12689999999999974 35678888999999988776
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=1.8e-22 Score=178.09 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=124.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.++.+...+.|+.+.++....+..++....+.+||++|++.+..+. ..+++.++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~ 79 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--SAYYRGAVGA 79 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHCCCCEE
Confidence 35799999999999999999999999988888999988888888888666778899999999998887 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||++++.+|..+..|+..+...... ++|+++|+||+|+... .+..+++.++++..+++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 80 LLVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998876532 5899999999999764 4667889999998888775
No 37
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=1.3e-22 Score=187.89 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=123.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+++|.+|||||||+++++.+.+...+.+|.+.++....+..+++...+.+||++|++.+..++ ..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--DGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHcccccE
Confidence 566899999999999999999999999988888999988877777777677888999999999999887 678999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
+|+|||+++++||..+..|+..+.... +++|++|||||+|+..+.+..+++ ++++..+++||
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~ 150 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYY 150 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEE
Confidence 999999999999999999999998754 279999999999998766666665 78888888876
No 38
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.90 E-value=1.2e-22 Score=181.51 Aligned_cols=137 Identities=21% Similarity=0.286 Sum_probs=117.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|..+.+...+.||++..+. ..+.+++....+.+||++|++.+..++ ..+++++|++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhh--hhhcccCCEEEE
Confidence 79999999999999999999999998888899887775 345667666788899999999998877 678999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhC-Cccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g-~~~f 429 (430)
|||+++++||+.+. .|+..+.... +++|++|||||+|+.+. .+..+++++++++.+ +.||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 99999999999997 5888887653 26899999999998652 467889999999987 5665
No 39
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=2e-22 Score=179.28 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=121.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||+++|.++.+...+.||++.++....+.+.+....+.+||++|++.+..+. ..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--STYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--HHHhcCCCEEEEE
Confidence 89999999999999999999999998888999988887888888767788999999999999887 7889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc---CcHHHHHHHHHHhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~---v~~~~~~~~~~~~g~~~f 429 (430)
||+++++||..+..|+..+.+.... .++|+++||||+|+.+.. +..+++.+++++++++||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDP--SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 9999999999999999998765432 157899999999996542 346778899999888775
No 40
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=176.68 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=123.8
Q ss_pred ccccCCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHH
Q 014101 45 DQESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLF 123 (430)
Q Consensus 45 ~~~~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~ 123 (430)
.+...+||++++++|+++|.+||+|+||.|+..||..+++ .+|..++++++..|++.+ |. +++ |+|.+|+.
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~------d~-~~~~idf~~Fl~ 79 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEI------DA-GNETVDFPEFLT 79 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhc------cC-CCCccCHHHHHH
Confidence 3456789999999999999999999999999999999987 679999999999999998 44 555 99999999
Q ss_pred HHHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHh
Q 014101 124 LHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDL 203 (430)
Q Consensus 124 ~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~ 203 (430)
+|...+.+. ...+.|+.||+.||+|+||+|+..||..+
T Consensus 80 ~ms~~~~~~------------------------------------------~~~Eel~~aF~~fD~d~dG~Is~~eL~~v 117 (160)
T COG5126 80 VMSVKLKRG------------------------------------------DKEEELREAFKLFDKDHDGYISIGELRRV 117 (160)
T ss_pred HHHHHhccC------------------------------------------CcHHHHHHHHHHhCCCCCceecHHHHHHH
Confidence 986544221 12356899999999999999999999999
Q ss_pred hccCCCCC--CCCCcccccccccCCcccchhhHHhhhhh
Q 014101 204 FSTAPECP--WDEAPYKDAAEKTALGGLSLDGFLSEWAL 240 (430)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~~ 240 (430)
++..+... ...+.+++.+|.|+||.|+|++|+..|..
T Consensus 118 l~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 118 LKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99765432 23356889999999999999999998764
No 41
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.89 E-value=1.5e-22 Score=184.29 Aligned_cols=141 Identities=16% Similarity=0.036 Sum_probs=118.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-----CCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-----GGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-----~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.++ +....+.+||++|++.+..+. ..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~--~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR--AVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH--HHHhCcC
Confidence 589999999999999999999999998888999988877777764 346678899999999999888 7899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCC----------------CCCCCCcEEEEEeCCCCCCcc-Cc----HHHHHH
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGE----------------DTGFEVPCLIVAAKDDLDSFA-MA----IQDSTR 419 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~----------------~~~~~~PiilVgnK~Dl~~~~-v~----~~~~~~ 419 (430)
|++|+|||+++++||+++..|+.++..... ....++|++|||||+|+.+++ +. ......
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999876421 112369999999999997653 33 234667
Q ss_pred HHHHhCCcc
Q 014101 420 VFTFLVMVL 428 (430)
Q Consensus 420 ~~~~~g~~~ 428 (430)
+|++.|++.
T Consensus 159 ia~~~~~~~ 167 (202)
T cd04102 159 VAEQGNAEE 167 (202)
T ss_pred HHHhcCCce
Confidence 888888764
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=3e-22 Score=177.55 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=124.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+|+|++|||||||++++.+..+...+.++.+.++....+..++....+.+||++|++.+..+. ..+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999999988887888888887888888777788999999999988877 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||..+..|+..+..... +++|+++|+||+|+.++ .+..+++..++.++++++|
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSN---SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999877642 37999999999999854 4778899999999988876
No 43
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=175.39 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=130.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+++|..-||||||+-||+.++|......|....|..+.+.+.+....+.||||+|+++|..+. +-||+.+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--PIYYRgSnG 88 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--PIYYRGSNG 88 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--ceEEeCCCc
Confidence 456899999999999999999999999998887788888888889998878888999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+++|||++|++||+.++.|..+++...+. .+-+++||||+||.+++ |+.+++.++|+..|+.|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~ 153 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYM 153 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhhe
Confidence 99999999999999999999999987654 68899999999999875 889999999999998875
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.89 E-value=3.1e-22 Score=182.65 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=124.3
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+|+|++|||||||+++|.+..+...+.+|++.++....+.+++....+.+||++|++.+..++ ..++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--STYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--HHHhCCCcEE
Confidence 46899999999999999999999999988888999988888888888666778899999999998887 7889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||+.+..|+..+.... ..+|++|||||+|+.+.. +..+++.++++.++++||
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999987654 268999999999998754 567889999999988776
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=2.1e-22 Score=177.07 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=118.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++..+.+...+.||.+. ...+.+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR--DLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHH--HHHhhcCCEEEE
Confidence 69999999999999999999999988877777764 344667777666778899999999999887 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+.+..|+..+...... .++|+++|+||+|+.+. .+..+++.++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDT--ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceecHHHHHHHHHHcCCeEE
Confidence 99999999999999999998775432 36899999999999764 4667788889998887765
No 46
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=3.1e-22 Score=184.24 Aligned_cols=141 Identities=20% Similarity=0.254 Sum_probs=123.6
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
.+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+. +....+.+||++|++.+..+. ..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT--RSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH--HHHhcCCcEE
Confidence 4899999999999999999999999988888999988888888774 446778899999999998887 7889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||+.+..|+..+...... ..+|++|||||+|+.+. .+..+++.++++.++++|+
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~--~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQP--HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999999998765432 25789999999999774 4778899999999998776
No 47
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.89 E-value=3.4e-22 Score=175.61 Aligned_cols=138 Identities=16% Similarity=0.262 Sum_probs=121.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC--CCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP--GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~--~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
+||+++|++|||||||++++.++.+...+.+|.+.++....+.++ +....+.+||++|++.+..+. ..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--HHHhcCCCEE
Confidence 489999999999999999999999988888898888876777766 667888999999999999887 6789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||..+..|+..+.... .++|+++|+||+|+..+ .+..+++.++++.+++++|
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999887644 27999999999999764 4677889999999998876
No 48
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=2.1e-22 Score=192.31 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=122.8
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC-------------CeEEEEEEeCCChhHH
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------GTKKTVVLREIPEEAV 347 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-------------~~~~~~i~d~~G~e~~ 347 (430)
.....+||+|+|..|||||||+++|.++.+...+.+|+|.++..+.+.+++ ....+.+||++|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 345568999999999999999999999999888889999988877777642 3467889999999999
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCC---------CCCCCcEEEEEeCCCCCCcc-------
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED---------TGFEVPCLIVAAKDDLDSFA------- 411 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~---------~~~~~PiilVgnK~Dl~~~~------- 411 (430)
..++ ..++++++++|+|||+++++||+.+..|+..+...... ...++|++|||||+||..++
T Consensus 97 rsL~--~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 97 KDCR--SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhh--HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9998 78999999999999999999999999999999875320 01258999999999997642
Q ss_pred CcHHHHHHHHHHhCC
Q 014101 412 MAIQDSTRVFTFLVM 426 (430)
Q Consensus 412 v~~~~~~~~~~~~g~ 426 (430)
+..+++++||+++|+
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 257999999999986
No 49
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=4.2e-22 Score=177.01 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=123.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH-hhhccccccccccEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA-KLLSNKDSLAACDIA 363 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~-~~~~~~~~~~~ad~v 363 (430)
.+||+++|++|||||||+++++++.+...+.++.+.++....+.+++....+.+||++|++.+. .+. ..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV--QHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH--HHhhcCCCEE
Confidence 4799999999999999999999999888888888888888888888777888999999998886 355 6778999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||..+..|+..+...... .++|+++|+||+|+...+ +..++++++++.++++||
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLP--NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCC--CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999988875432 379999999999997654 678889999999988876
No 50
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=4e-22 Score=180.18 Aligned_cols=139 Identities=21% Similarity=0.261 Sum_probs=122.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++....+.+||++|.+.+..++ ..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--NSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--HHHccCCCEEEE
Confidence 589999999999999999999999988777899988887888888777778899999999998877 788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||..+..|+..+...... ++|+++||||+|+.+. .+..+++..+++.++++|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998876432 5899999999999864 4678889999999888775
No 51
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=1.9e-22 Score=179.22 Aligned_cols=139 Identities=42% Similarity=0.596 Sum_probs=118.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCC-CCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~-~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
+++++||+++|++|||||||+++|+++.+. ..+.||++.++....+.+++....+.+||++|++.+..+. ..+++++
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~ 78 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN--DAELAAC 78 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc--hhhhhcC
Confidence 367899999999999999999999999998 7888999988887888888766778899999998887776 6788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCc
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 427 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~ 427 (430)
|++++|||++++.+|+.+..|+..+... .++|+++|+||+|+.+.+ +...+++++++.+++.
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFML-----GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP 141 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhccC-----CCCeEEEEEEcccccccccccccCHHHHHHHcCCC
Confidence 9999999999999999999998876432 268999999999996543 4455678888888864
No 52
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=3.9e-22 Score=174.76 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=120.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++....+.+||++|++.+..++ ..+++.++++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH--HHHHhcCCEEEE
Confidence 6999999999999999999999998888878877655 4556777666677899999999999888 688999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.+|..+..|+..+.+.... .++|+++|+||+|+..+.+...++.++++.++++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDS--DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEE
Confidence 99999999999999999988775432 268999999999998866778889999998888765
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=7e-22 Score=174.52 Aligned_cols=139 Identities=18% Similarity=0.296 Sum_probs=121.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.++.+...+.++.+.++..+.+.+++....+.+||++|++.+..+. ..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT--QSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEE
Confidence 35899999999999999999999999888887888888887888888655678899999999998877 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~ 427 (430)
++|||++++.||+.+..|+..+..... .++|+++|+||+|+... .+..+++.++++.+++.
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYGA---SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGML 141 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 999999999999999999999876543 27899999999999765 46678899999988863
No 54
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=3.6e-22 Score=176.07 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=119.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||+++++.+.+...+.||++..+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHH--HHHHhhCCEEEE
Confidence 69999999999999999999999888777788876654 567777666777899999999999988 788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.||+.+..|+..+...... .++|+++|+||+|+...+ +...++.+++++++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEE
Confidence 99999999999999999998765322 379999999999998754 566778899999988775
No 55
>PLN03110 Rab GTPase; Provisional
Probab=99.89 E-value=5.7e-22 Score=183.18 Aligned_cols=142 Identities=17% Similarity=0.236 Sum_probs=126.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+++|++|||||||+++|.+..+...+.+|++.++....+.+++....+.+||++|++++..++ ..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--SAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhCCCCE
Confidence 456899999999999999999999999988888999999988888888777788999999999999887 788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+++|||++++.+|+.+..|+..+..... .++|+++|+||+|+...+ +..+++..+++.++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHAD---SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999887643 279999999999997654 667899999999988876
No 56
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=4.7e-22 Score=175.12 Aligned_cols=139 Identities=16% Similarity=0.225 Sum_probs=118.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||++++..+.+...+.+|.+ .+....+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchH--HHHHhhCCEEEE
Confidence 6999999999999999999999999888777775 4455677777666778899999999999888 778999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+++..|+..+...... .++|+++|+||+|+..+ .+...++..+++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGY--EKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999988775322 37999999999999664 4566788999988888765
No 57
>PTZ00369 Ras-like protein; Provisional
Probab=99.88 E-value=5.6e-22 Score=179.46 Aligned_cols=141 Identities=19% Similarity=0.248 Sum_probs=121.6
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|.+|||||||+++|.++.+...+.||.+..+ .+.+.+++....+.+||++|++.+..++ ..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR--DQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH--HHHhhcCCEE
Confidence 358999999999999999999999999888878887766 3566777667778899999999999988 6889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||+++++||+.+..|+..+...... .++|+++|+||+|+.+. .+...++.++++.++++||
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDK--DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999999988765432 37899999999999754 4677889999999888876
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=7.3e-22 Score=176.29 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=116.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+.+|..+.+...+.||.+..+. ..+.+++....+.+||++|++.+..++ ..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhcCCCCEEEE
Confidence 69999999999999999999999998888888865443 455667666788899999999998887 678999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~-~~f 429 (430)
|||+++++||..+. .|+..+.... +++|++|||||+|+.+. .+..+++.+++++++. +||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999996 5888776543 37999999999999642 3678999999999984 665
No 59
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9e-24 Score=176.24 Aligned_cols=143 Identities=12% Similarity=0.162 Sum_probs=125.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC---------CCeEEEEEEeCCChhHHHhhhccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP---------GGTKKTVVLREIPEEAVAKLLSNK 354 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~---------~~~~~~~i~d~~G~e~~~~~~~~~ 354 (430)
..+|.+.+|++||||||++.++..++|......|.|.++..+.+-+. +..+.+++|||+|+|+|+++. -
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT--T 85 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT--T 85 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH--H
Confidence 45788999999999999999999999998888899999988776542 124567799999999999998 7
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCcccC
Q 014101 355 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~fk 430 (430)
.++++|-+++++||+++..||-++..|+.++....-. .++-+|++|||+||++.+ |+..++.++|.++|+|||.
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 8999999999999999999999999999998776443 256799999999999976 7799999999999999984
No 60
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=4.5e-22 Score=180.20 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=118.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|.+|||||||+++|..+.+...+.+|++..+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALR--DQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHHhCCEEEEE
Confidence 6899999999999999999999998888788876654 455667666778899999999999887 7889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
||+++++||+.+..|+..+.........++|+++||||+|+... .+...++.++++.++++||
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFI 141 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999887654321237899999999999754 4677788999999998876
No 61
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-22 Score=175.70 Aligned_cols=145 Identities=20% Similarity=0.277 Sum_probs=120.6
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALF 128 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~ 128 (430)
.+++.+..+++++|..||+|+||+|+..||..+++. +|..++++++..+++.+ |.+++| |+|++|+.++...
T Consensus 1 ~~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~~------D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 1 ELSEEQILELKEAFQLFDKDGDGKISVEELGAVLRS-LGQNPTEEELRDLIKEI------DLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHh------CCCCCCeEcHHHHHHHHHhh
Confidence 367889999999999999999999999999999765 68889999999999999 678889 9999999997643
Q ss_pred HHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCC
Q 014101 129 IEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP 208 (430)
Q Consensus 129 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~ 208 (430)
...... . ....+.+++||+.||+||||+||.+||+.++...+
T Consensus 74 ~~~~~~-------------------------------~-------~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 74 GEEKTD-------------------------------E-------EASSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred hccccc-------------------------------c-------cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 211000 0 02334689999999999999999999999999865
Q ss_pred CCC--CCCCcccccccccCCcccchhhHHhhhh
Q 014101 209 ECP--WDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 209 ~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
... ..+..+++.+|.|+||.|+|++|+..+.
T Consensus 116 ~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 116 EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 433 3456788999999999999999998865
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.88 E-value=8.4e-22 Score=174.13 Aligned_cols=141 Identities=16% Similarity=0.243 Sum_probs=117.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++++++.+...+.|+.+..+ ...+...+....+.+||++|++.+..+. ..+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ--RLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHH--HHHhhcCCEEEE
Confidence 6999999999999999999999999888778776555 3445556566778899999999988876 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+.+..|+..+........+++|+++|+||+|+.. +.+..+++..++..++++||
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 143 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFM 143 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEE
Confidence 99999999999999998887765432224799999999999976 45677888999998888775
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=1e-21 Score=172.58 Aligned_cols=139 Identities=17% Similarity=0.294 Sum_probs=122.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+|+|++|||||||++++.++.+...+.++.+.++....+.+++....+.+||++|++.+.... ..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT--RSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH--HHHhcCCCEEEE
Confidence 589999999999999999999999988887888888877778888666788899999999988877 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.+|..+..|+..+..... +++|+++|+||+|+... .+..+++..+++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALAS---PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFL 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999998876542 37999999999999764 4678899999999988765
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=1.7e-21 Score=170.94 Aligned_cols=139 Identities=16% Similarity=0.274 Sum_probs=121.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++++..+...+.++.+.++....+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEEEE
Confidence 489999999999999999999999988888899888888888888666778999999999998887 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||..+..|+..+...... ++|+++|+||+|+... .+..++...+++..+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999998765422 6999999999999544 4677889999988887764
No 65
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4e-22 Score=163.21 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=130.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+|.+++|+-|||||+|++.|...+|...-..|+|+.+..+.+++.|...+++||||+|+++|+... +.|++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravt--rsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH--HHHhccccc
Confidence 457899999999999999999999999998887899999999999999999999999999999999998 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
.+.|||++.++++..+..|+...+.... ++..++++|||.||..++ |+.+++++|+++.|+.|.
T Consensus 87 almvyditrrstynhlsswl~dar~ltn---pnt~i~lignkadle~qrdv~yeeak~faeengl~fl 151 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTN---PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFL 151 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCC---CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEE
Confidence 9999999999999999999988776543 478899999999999875 889999999999998774
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=1.5e-21 Score=176.88 Aligned_cols=139 Identities=18% Similarity=0.311 Sum_probs=120.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+++|++|||||||+++|.++.+.. .+.+|++.++....+.+++....+.+||++|++.+.... ..+++.+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--HAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--HHHccCCCEEE
Confidence 589999999999999999999998864 456788878777777888777888899999999998877 67889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
+|||+++++||+++..|+..+...... ++|+++|+||+|+... .+..+++..+++.++++|+
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999998876532 6899999999999653 4677889999999998876
No 67
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=2.2e-21 Score=178.59 Aligned_cols=141 Identities=14% Similarity=0.226 Sum_probs=124.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+|+|++|||||||++++++..+...+.+|++.++....+.+++....+.+||++|++.+..++ ..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~--~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCEE
Confidence 46899999999999999999999999988888899988888888888767778899999999998877 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||++++.||..+..|+..+..... +++|+++|+||+|+... .++.+++++++++++++||
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999988776542 27899999999999875 4778899999999998876
No 68
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=2.3e-21 Score=170.47 Aligned_cols=139 Identities=19% Similarity=0.317 Sum_probs=122.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++....+.+||++|++.+.... ..+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT--SSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhCCCCEEEE
Confidence 589999999999999999999999888887888888888888888666788899999999888877 778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.+++.+..|+..+..... +++|+++|+||+|+... .+..+.+.++++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999887653 27999999999999774 4667889999999988765
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=1.8e-21 Score=171.36 Aligned_cols=136 Identities=21% Similarity=0.264 Sum_probs=115.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--ASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999988777777777766667777666778899999999999888 789999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.++..+..|+..+.... +++|+++|+||+|+... ...+..++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~ 136 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYR----PEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLY 136 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEECccCchh--HHHHHHHHHHHcCCeEE
Confidence 999999999999999999997653 26899999999998542 23556778888887765
No 70
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=1.5e-21 Score=172.95 Aligned_cols=137 Identities=14% Similarity=0.203 Sum_probs=117.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..+. ..+++.+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--DGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--HHHhcCCCEEEE
Confidence 589999999999999999999988887787888887776666667677888999999999888776 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||..+..|+..+..... ++|+++||||+|+..+.+. .+..++++..++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 137 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYY 137 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEE
Confidence 9999999999999999999987653 6999999999999865544 445678877777776
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=2.9e-21 Score=169.56 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=123.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.+..+...+.|+.+.++....+.+.+....+.+||++|++.+.... ..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--SSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999887777899888887777777666788999999998888776 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.+|+.+..|+..+...... .++|+++|+||+|+....+..+++.++++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTN--NDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFI 140 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCC--CCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988876543 379999999999999767778899999999998876
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=2.2e-21 Score=170.65 Aligned_cols=140 Identities=18% Similarity=0.302 Sum_probs=118.3
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+.+....+.+||++|++.+..+. ..+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR--EQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHH--HHHHhhCCEEE
Confidence 47999999999999999999999988777767776544 3556677666778899999999999887 68889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDR--DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 999999999999999999988765322 268999999999997754 567789999999888775
No 73
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=3e-21 Score=174.08 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=115.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+|+|++|||||||+++|.++.+...+.|+.+.++.. .+..+ +....+.+||++|++.+..+. ..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLR--PLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHH--HHhCCCCCEEE
Confidence 489999999999999999999999988887888776643 45554 556778899999999998887 67889999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-----cCcHHHHHHHHHHhCC-ccc
Q 014101 365 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-----AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-----~v~~~~~~~~~~~~g~-~~f 429 (430)
+|||+++++||+.+. .|+..+.... +++|+++||||+|+... .+...+++++++.+++ ++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFC----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 999999999999986 4887776543 26899999999999663 3568899999999987 665
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=2e-21 Score=171.11 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=117.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+|+|++|||||||+++++++.+...+.+|.+..+ ...+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMR--DQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhCCEEEE
Confidence 4899999999999999999999998887777776444 4566667666788899999999998887 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
|||++++++|+.+..|+..+.+.... .++|+++||||+|+.+.+ +..+++.++++.++++||
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDR--DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEE
Confidence 99999999999999999888765432 268999999999998753 667888999999988776
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=3e-21 Score=175.33 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=108.8
Q ss_pred eeEEEEeCCCCCCHHHHHH-HHhCCC-----CCCCcCCCccc-e-EEEE-------EEEcCCCeEEEEEEeCCChhHHHh
Q 014101 285 VFQCFVFGPKKAGKSVLLN-SFLGRP-----FSDNYTPTTDE-R-YAVN-------VVDQPGGTKKTVVLREIPEEAVAK 349 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~-~l~~~~-----~~~~~~~t~~~-~-~~~~-------~v~~~~~~~~~~i~d~~G~e~~~~ 349 (430)
.+||+++|++|||||||+. ++.++. +...+.||++. + +... .+.+++....+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 666543 44556688752 2 3222 1245667788899999999752
Q ss_pred hhccccccccccEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-------------------
Q 014101 350 LLSNKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS------------------- 409 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~------------------- 409 (430)
+. ..+++++|++++|||++++.||+.+. .|+..+.... +++|+++||||+||.+
T Consensus 80 ~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 DR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred hh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccccccchhhhccccccccccc
Confidence 33 56889999999999999999999997 5988887654 2689999999999963
Q ss_pred -ccCcHHHHHHHHHHhCCccc
Q 014101 410 -FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 410 -~~v~~~~~~~~~~~~g~~~f 429 (430)
+.++.++++++|+++|++||
T Consensus 154 ~~~V~~~e~~~~a~~~~~~~~ 174 (195)
T cd01873 154 ADILPPETGRAVAKELGIPYY 174 (195)
T ss_pred CCccCHHHHHHHHHHhCCEEE
Confidence 35789999999999999886
No 76
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=2.4e-21 Score=175.35 Aligned_cols=136 Identities=22% Similarity=0.247 Sum_probs=114.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR--SLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccc--cccccCCCEEEEE
Confidence 8999999999999999999999998888888877664 456666666788899999999998887 6789999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-------------CcHHHHHHHHHHhC-Cccc
Q 014101 367 HDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-------------v~~~~~~~~~~~~g-~~~f 429 (430)
||+++++||+.+. .|+..+.... +++|+++||||+|+.+.. +..+++.+++++++ ++||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHC----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL 152 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999986 5888887653 379999999999997642 45677888998887 5665
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.87 E-value=5.1e-21 Score=168.55 Aligned_cols=138 Identities=18% Similarity=0.300 Sum_probs=117.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCC--CCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~--~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+||+++|++|||||||++++.++ .+...+.+|.+.++..+.+.++ +....+.+||++|++.+..+. ..+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--SNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--HHHhCCCCE
Confidence 48999999999999999999865 6777888899888877777765 456788899999999988887 678899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
+++|||++++++|..+..|+..+.... .++|+++|+||+|+.+. ++...+++.++..++++++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFF 142 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999987764 26899999999999664 3566777888888887765
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.87 E-value=2.5e-21 Score=176.34 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=116.6
Q ss_pred eCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECC
Q 014101 291 FGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 291 vG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t 370 (430)
+|.+|||||||+++|+.+.+...+.||++.++....+.+++....+.+||++|++.+..++ ..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhcCCCEEEEEEECC
Confidence 6999999999999999999988888999988887888888778889999999999999988 68999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 371 DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 371 ~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
++.||..+..|+..+.+.. +++|++|||||+|+..+.+..+. .++++..+++||
T Consensus 79 ~~~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~~~ 132 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQYY 132 (200)
T ss_pred ChHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCHHH-HHHHHHcCCEEE
Confidence 9999999999999998764 27999999999999776665544 478888888876
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.87 E-value=4e-21 Score=174.25 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=118.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+|+|++|||||||+++|+++.+.. .+.+|++..+..+.+.+++....+.+||++|++.+..+. ..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--RIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HhhcCCCCEEE
Confidence 489999999999999999999999875 567888888877888888777778899999999888877 67889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-----cCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-----AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-----~v~~~~~~~~~~~~g~~~f 429 (430)
+|||++++.||+.+..|+..+.... +++|+++|+||+|+.+. ++..+++.++++.+++++|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999987653 26899999999998642 3456778899988887765
No 80
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=3.1e-21 Score=178.10 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=110.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||+++|.++.+.. +.+|++..+....+ +...+.+||++|++.+..+. ..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG--SMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH--HHHhccCCEEEE
Confidence 589999999999999999999999875 45888876654332 34667899999999999887 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC--------------------ccCcHHHHHHHHHHhC
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS--------------------FAMAIQDSTRVFTFLV 425 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~--------------------~~v~~~~~~~~~~~~g 425 (430)
|||+++++||..+..|+..+..... .++|+||||||+|+.+ +.++.+++.++|++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~---~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTAN---EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 9999999999999999888876432 3689999999999975 3577899999999987
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=6.8e-21 Score=167.47 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=122.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++++++.+...+.++.+..+....+.+++....+.+||++|++.+...+ ..+++.+|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA--PMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhccCCEEEE
Confidence 799999999999999999999999988777888888888888888777788999999999988877 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++++|..+..|+..+..... +++|+++|+||+|+... ....+++.++++.++++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFF 141 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999887653 37999999999999853 4677889999999887664
No 82
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=4.8e-23 Score=167.02 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=123.4
Q ss_pred EeCCCCCCHHHHHHHHhCCCCCCC-cCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEE
Q 014101 290 VFGPKKAGKSVLLNSFLGRPFSDN-YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 368 (430)
Q Consensus 290 vvG~~~vGKSSLi~~l~~~~~~~~-~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D 368 (430)
++|++++|||+|+-||..+.|-.. ..+|.|.++..+.+++++..+++++|||+|+++|++.. ..|++++|+++++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--HAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--Hhhhcccceeeeeee
Confidence 689999999999999988876543 45899999999999999999999999999999999998 899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 369 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 369 ~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
++++.||++++.|+.++.++... .+.+.++|||+|+..++ |..++++++++.+|+||.
T Consensus 80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFM 138 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCCce
Confidence 99999999999999999998754 68899999999997754 778999999999999985
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=5.8e-21 Score=173.97 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=112.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhh------cccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLAA 359 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~------~~~~~~~~ 359 (430)
+||+|+|.+|||||||+++|.++.+...+.||.+.+.....+.+++....+.+||++|.+.+.... .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888888877665667777666778899998854322110 01345789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHH-HhCCccc
Q 014101 360 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFT-FLVMVLY 429 (430)
Q Consensus 360 ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~-~~g~~~f 429 (430)
+|++++|||+++++||+.+..|+..+.........++|+++||||+|+...+ +..+++++++. .++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999998876542111379999999999997654 56677777765 5678776
No 84
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=4.7e-21 Score=170.59 Aligned_cols=135 Identities=20% Similarity=0.277 Sum_probs=114.2
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEE
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVH 367 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~ 367 (430)
|+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++....+.+||++|++.+..+. ..+++.+|++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLR--PLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhc--hhhcCCCCEEEEEE
Confidence 589999999999999999999998888777765554 456677666778899999999988877 67889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC-ccc
Q 014101 368 DSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 368 D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~-~~f 429 (430)
|+++++||+.+. .|+..+.... +++|+++||||+|+..+ .++.+++.++++++++ +||
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEE
Confidence 999999999986 5888887654 37999999999999752 2667889999999986 665
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.86 E-value=1.2e-20 Score=168.17 Aligned_cols=137 Identities=16% Similarity=0.254 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.++.+...+.||... .....+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLR--PLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhcccc--ccccCCCcEEEE
Confidence 58999999999999999999999998888676643 444567777666788899999999998887 678899999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-------------ccCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-------------~~v~~~~~~~~~~~~g~-~~f 429 (430)
|||+++++||+.+. .|+..+.... +++|+++||||+|+.. ..+..+++.++++++++ +|+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 152 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYI 152 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEE
Confidence 99999999999985 6888877542 2689999999999964 24678899999999987 554
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=8.4e-21 Score=166.73 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=109.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|+.+.+...+.|+ +..+ ...+.+++....+.+||++|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence 48999999999999999999999887766444 4445 36678886667788999999964 235678999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC---ccCcHHHHHHHHHHhC-Cccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS---FAMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~---~~v~~~~~~~~~~~~g-~~~f 429 (430)
|||+++++||+++..|+..+...... +++|+++||||+|+.. +.++.+++++++++++ ++||
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 137 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNI--SEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY 137 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEE
Confidence 99999999999999999999876432 3689999999999853 3577889999998874 7775
No 87
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=173.08 Aligned_cols=140 Identities=21% Similarity=0.290 Sum_probs=125.2
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.+||+++|.+|||||+|+.+|.++.|...+.||++..+ .+.+.++++...+.|+||+|++.+..+. ..+++++|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~--~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMR--DLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHH--HHhhccCcEEE
Confidence 47999999999999999999999999999999998544 4778888788888899999999999887 78999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
+||+++++.||+.+..++..+.+.... ..+|+++||||+|+.. +.|+.++++++++.++++|+
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~--~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGR--DDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCc--CCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 999999999999999999999554433 2689999999999998 46899999999999999975
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.85 E-value=3e-20 Score=164.79 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=119.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.+..+...+.++.+.++..+.+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG--VAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH--HHHhcCCCEEEE
Confidence 589999999999999999999999888887888888887888888777778899999999988887 688999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhC-Cccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~-~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g-~~~f 429 (430)
|||++++.+++++..|...+...... ...++|+++|+||+|+.. .....++...+++..+ .++|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF 145 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence 99999999999999998877655321 122689999999999984 4466788888988887 5544
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=3.7e-20 Score=162.18 Aligned_cols=139 Identities=17% Similarity=0.265 Sum_probs=118.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++++++.+...+.++.+..+....+.+.+....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--PIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--HHHhccCCEEEE
Confidence 589999999999999999999999887776777777766677777656678899999999888887 677899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++++..+..|+.++...... ++|+++|+||+|+... ++..+++.++++..++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999998876533 6899999999999864 4667788888888887765
No 90
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=1.9e-20 Score=176.09 Aligned_cols=141 Identities=18% Similarity=0.329 Sum_probs=115.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|+++.+...+.||++ ++..+.+.+++....+.+||++|++.+..+. ..++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR--RLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHH--HHHhccCCEEEE
Confidence 4899999999999999999999999888778876 4555677888666778899999999988876 567899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCC------CCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHh-CCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGE------DTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFL-VMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~------~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~-g~~~f 429 (430)
|||+++++||+++..|+.++..... ....++|+|+|+||+|+.. ..+..+++.+++... ++.||
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999875421 1123789999999999976 457777888877643 45554
No 91
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.85 E-value=1.1e-20 Score=166.83 Aligned_cols=139 Identities=22% Similarity=0.356 Sum_probs=112.4
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHH-HhhhccccccccccEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-AKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~-~~~~~~~~~~~~ad~vil 365 (430)
||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++....+.+||++|++.+ .... ..+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQL--ERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchH--HHHHHhCCEEEE
Confidence 689999999999999999999888777767765544 355666766677889999998752 2233 467889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|||+++++||+.+..|+..+...... ..++|+++||||+|+... .+..+++.++++.++++||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKR-DREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999888765420 136999999999999654 4678899999999998876
No 92
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=2.9e-20 Score=172.40 Aligned_cols=138 Identities=21% Similarity=0.312 Sum_probs=113.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCC-CCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccc-cccEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA-ACDIA 363 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~-~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~-~ad~v 363 (430)
+||+++|++|||||||+++|.++.+. ..+.++.+.++..+.+.+++....+.+||++|++.+ .. ..+++ .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~--~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TE--DSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HH--hHHhhcCCCEE
Confidence 58999999999999999999988886 566566665677778888877778889999999722 22 34456 89999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||++++.||+.+..|+..+...... .++|+|+|+||+|+... .+..+++.+++..++++|+
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQL--EDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE
Confidence 9999999999999999999988775422 27999999999999764 4677888999998888765
No 93
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.84 E-value=3.3e-20 Score=164.44 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=118.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||+++|.++.+...+.++.+..+ .+.+.+++....+.+||++|++.+..++ ..+++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR--ELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhh--HHHHhhCCEEEE
Confidence 6899999999999999999999998887778877554 4667777666788899999999999888 788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhC-Cccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g-~~~f 429 (430)
|||++++++++.+..|...+...... .++|+++|+||+|+... .+..+++.++++.++ +++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDS--DNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFY 142 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC--CCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEE
Confidence 99999999999999999888764322 37999999999999764 366778888988888 6665
No 94
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=6.6e-20 Score=159.35 Aligned_cols=139 Identities=19% Similarity=0.346 Sum_probs=122.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++.+..+...+.+|.+.++....+..++....+.+||++|.+.+.... ..+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT--PSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH--HHHhcCCCEEEE
Confidence 589999999999999999999999988877888888888888887666778899999999888877 788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC-CccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD-SFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~-~~~v~~~~~~~~~~~~g~~~f 429 (430)
|+|+++++++..+..|+..+..... ...|+++|+||+|+. ......+++.++++.++++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFF 140 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEE
Confidence 9999999999999999999887653 268999999999997 445678899999998888765
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.84 E-value=6.3e-20 Score=168.96 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=118.0
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+|+|++|||||||+++|.+..+. .+.++.+.++....+.+++....+.+||++|++.+..++ ..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT--SSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCE
Confidence 34589999999999999999999998875 445888888887888887667788999999999999887 788999999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 363 AVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
+++|||+++++||..+.. |...+...... .+.|+++|+||+|+... .+..+++.++++.++++||
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTN--QDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 999999999999999987 54555433221 26899999999999765 3667888899999888776
No 96
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.84 E-value=6.7e-20 Score=163.09 Aligned_cols=137 Identities=22% Similarity=0.346 Sum_probs=113.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++....+.+||++|++.+..+. ..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--cccCCCCCEEEE
Confidence 58999999999999999999999998777777665443 456667556667899999999988877 678899999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~-~~f 429 (430)
|||++++++|+.+. .|+..+.... +++|+++||||+|+.+. .++.+++..+++.+|+ +||
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYA----PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYV 152 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999986 5777776542 37999999999998653 4667889999999986 454
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=2.5e-19 Score=158.58 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=117.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+....+.+||++|++.+.... ..+++.+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--QSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999888877777888877777778887666778899999998888876 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
++|||++++.+|..+..|+..+...... ++|+++|+||+|+.+. ++.......+.+....+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~ 147 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYL 147 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888765432 6899999999999754 4556667778776665543
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.83 E-value=3.5e-20 Score=163.80 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=107.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
.|+++|++|||||||+++|.++.+...+.||.+... +.++++...+.+||++|++.+..++ ..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYW--KRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHH--HHHHhhCCEEEEE
Confidence 379999999999999999999988777778887653 2334456788999999999999888 6889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcH-----HHHHHHHHHhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAI-----QDSTRVFTFLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~-----~~~~~~~~~~g~~~f 429 (430)
||++++.+|..+..|+..+.... +++|+++|+||+|+...+... ..+.+++++.++.+|
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQ 138 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEE
Confidence 99999999999999998886543 279999999999997754221 235666666666554
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.83 E-value=2.4e-19 Score=157.45 Aligned_cols=139 Identities=21% Similarity=0.301 Sum_probs=117.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||++++++..+...+.++.+..+. .....++....+.+||++|++.+.... ..+++.++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIR--DNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHHH--HHHhhcCCEEEE
Confidence 58999999999999999999999988777777765554 455666667788999999999988887 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
|||++++.+|..+..|+..+...... .++|+++|+||+|+.. ......+..++++.++++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDD--DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999988876432 3799999999999987 34667788889998888775
No 100
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=4.8e-21 Score=163.13 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=130.1
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+|++|+|..+|||||+|+||+.+-|...+..|+|+++....+.+.+.......||++|++.+..+. ..|++.|.+-
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt--kAyyrgaqa~ 96 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT--KAYYRGAQAS 96 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH--HHHhccccce
Confidence 35899999999999999999999999999999999999998888888777888899999999999998 8999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCcccC
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~fk 430 (430)
++||+-+|+.||+.+.+|.+.+..... .+|.|+|-||+|+.++. +...+++.+++.+++.+|+
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhh
Confidence 999999999999999999999988763 79999999999998864 6789999999999998875
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=5.3e-19 Score=157.47 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=110.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
.||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|++.+..+. ..+++++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhcc--ccccCCCCEEEE
Confidence 58999999999999999999999998888788876654 456677666778899999999988876 567899999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM 426 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~ 426 (430)
|||+++++||+.+. .|+..+.... +++|+++|+||+|+.+. .+...+++++++.++.
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 99999999999985 4777776543 26899999999998652 2446788888888774
No 102
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=5.9e-19 Score=162.96 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=119.7
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
....+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++...+.+||++|++.+..++ ..+++.++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCC
Confidence 3456899999999999999999999998888888999988887777777788889999999999888877 67888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
++++|||+++..||..+..|+..+.... .++|+++|+||+|+.+..+..+ ..++++..++.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~ 146 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVKAR-QITFHRKKNLQYY 146 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCCHH-HHHHHHHcCCEEE
Confidence 9999999999999999999999987654 2689999999999976555433 3467777777664
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=3.6e-19 Score=157.97 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=103.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
+.+||+++|.+|||||||++++..+.+.. +.||++.++. .+.. ....+.+||++|++.+..++ ..+++++|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999887754 4578877653 3333 35778999999999998887 7889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHH
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 421 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~ 421 (430)
++|||++++.+|.++..|+.++...... .++|++||+||+|+.+ .+..+++.+++
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~i~~~~ 135 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREM--RDALLLVFANKQDLPD-AMKPHEIQEKL 135 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhh--cCCcEEEEEECcCCcc-CCCHHHHHHHc
Confidence 9999999999999999988887654211 2689999999999976 35566666654
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.81 E-value=5.7e-19 Score=154.27 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=116.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||++++++..+...+.++.+ +.....+...+....+.+||++|.+.+..+. ..+++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMR--DLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHHhcCCEEEEE
Confidence 689999999999999999999888777777766 4445566666556778899999998888877 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-ccCcHHHHHHHHHHhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-~~v~~~~~~~~~~~~g~~~f 429 (430)
||+++++++..+..|+..+...... ..+|+++|+||+|+.. ..+..+++.++++.++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFI 139 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEE
Confidence 9999999999999999888876532 2699999999999987 34677899999998887765
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=7.7e-19 Score=154.38 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=96.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|||||||++++..+.+.. +.||++.++. .+.. ....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEEEE
Confidence 489999999999999999998888864 5688876653 3333 35778899999999999888 788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|||++++.+|+.+..|+..+...... .++|++||+||+|+.+.
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNA 116 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCC
Confidence 99999999999999988887654221 25899999999999763
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=6.5e-19 Score=157.37 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=97.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++..+.+. .+.||++.++. .+... ...+.+||++|++.+..++ ..+++++|++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~ad~i 84 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLW--RHYYTNTQGL 84 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHH--HHHhCCCCEE
Confidence 3589999999999999999999877774 35578876654 33333 4678899999999999888 7889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++|||++++++++.+..|+..+...... .++|++||+||+|+.+
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~ 128 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPD 128 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCccc
Confidence 9999999999999999999887654211 2689999999999976
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=5.7e-19 Score=158.65 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=103.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+++|.+|||||||++++..+.+.. +.||++.++. .+... ...+.+||++|++.+..++ ..+++++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~--~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLW--RHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCE
Confidence 344799999999999999999999887763 5588876553 34433 5778899999999999988 788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
+|+|||+++++++.++..++..+...... +++|++||+||+|+.+. .. +.++.+.+|+
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~--~~~piilv~NK~Dl~~~-~~---~~~~~~~l~l 145 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNA-MN---AAEITDKLGL 145 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhh--CCCCEEEEEECCCCCCC-CC---HHHHHHHhCc
Confidence 99999999999999998888877643211 26899999999999763 32 3445555554
No 108
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=1.5e-18 Score=155.48 Aligned_cols=139 Identities=15% Similarity=0.244 Sum_probs=114.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
.||+++|.+|||||||++++.+..+...+.|+.+..+. ..+.+++....+.+||++|++.+..+. ..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKGQDYHLEIVDTAGQDEYSILP--QKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECCEEEEEEEEECCChHhhHHHH--HHHHhhCCEEEE
Confidence 58999999999999999999999887777777765543 555666555667899999999888777 678899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
|||+++..+++.+..|+..+.+.... .+.|+++|+||+|+...+ +...+...+++.++.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGK--ESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFL 141 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999888775432 268999999999997643 556678888888887665
No 109
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.80 E-value=2.2e-19 Score=159.34 Aligned_cols=139 Identities=19% Similarity=0.293 Sum_probs=121.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
..+|++|||+.+||||+|+..+..+.|+..+.||.-.++. ..+.++ |..+.+-+|||+|++.|..++ +-.|.++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys-~~v~V~dg~~v~L~LwDTAGqedYDrlR--plsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYS-ANVTVDDGKPVELGLWDTAGQEDYDRLR--PLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccce-EEEEecCCCEEEEeeeecCCCccccccc--ccCCCCCCE
Confidence 3479999999999999999999999999999999986665 567774 778888899999999999977 678999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-------------cCcHHHHHHHHHHhCC-c
Q 014101 363 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 427 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-------------~v~~~~~~~~~~~~g~-~ 427 (430)
+++||++.+++||+++. .|+.++...+ +++|+||||+|.||.+. .++.+++.++|+++|+ .
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence 99999999999999965 5999999987 47999999999999742 4778999999999994 4
Q ss_pred cc
Q 014101 428 LY 429 (430)
Q Consensus 428 ~f 429 (430)
|+
T Consensus 156 y~ 157 (198)
T KOG0393|consen 156 YL 157 (198)
T ss_pred ee
Confidence 43
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.8e-18 Score=157.59 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=109.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||+++|+++.+...+.++.. ......+.+.+....+.+||++|+..+..+. ..++..+|++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMR--KLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHH--HHHhhcCCEEEEE
Confidence 689999999999999999999998877766665 3444567777656778899999999888877 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc--cCcHHHHHHHHH-HhCCccc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF--AMAIQDSTRVFT-FLVMVLY 429 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~--~v~~~~~~~~~~-~~g~~~f 429 (430)
||++++.+|+.+..|+..+...... .++|+++|+||+|+... .+..+++.+... ..+++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 141 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKED--KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFV 141 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEE
Confidence 9999999999999999888876432 26999999999999652 344444444443 3445543
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=2.5e-18 Score=154.69 Aligned_cols=131 Identities=23% Similarity=0.280 Sum_probs=104.6
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
.+||+++|.+|||||||++++..+.+... .||.+.+.....+... +....+.+||++|++.+..++ ..+++++|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW--KSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH--HHHhccCCEE
Confidence 47999999999999999999999888654 4777766655555543 245778899999999998888 6789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHH
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 421 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~ 421 (430)
++|||+++++++..+..|+.++...... .+.|+++|+||+|+.. ....++...++
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~--~~~p~iiv~NK~D~~~-~~~~~~~~~~~ 134 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSEN--QGVPVLVLANKQDLPN-ALSVSEVEKLL 134 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhc--CCCcEEEEEECcCccc-cCCHHHHHHHh
Confidence 9999999999999999998887765332 2689999999999875 23344445444
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=1.7e-18 Score=155.67 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=97.0
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|++|||||||++++..+.+.. +.||.+.++. .+.. ....+.+||++|++.++.++ ..+++++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLW--RHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCE
Confidence 345899999999999999999998887765 4578776553 3443 34778899999999999888 788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+|+|||++++++|..+..++..+...... .++|++||+||+|+.+
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLPN 132 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCCC
Confidence 99999999999999998888877543211 2689999999999976
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=2e-18 Score=152.90 Aligned_cols=137 Identities=20% Similarity=0.298 Sum_probs=110.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|+++.+...+.++....+. ..+..++....+.+||++|++.+.... ...++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRLR--PLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--hhhcCCCCEEEE
Confidence 58999999999999999999999987666666654443 455666677788999999998877665 567799999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc------------CcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA------------MAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~------------v~~~~~~~~~~~~g~-~~f 429 (430)
|||++++.+|.... .|+..+..... +.|+++|+||+|+.... +..+++.+++..+++ +||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 99999999998765 47777766542 69999999999997653 246788889888887 554
No 114
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.79 E-value=2.8e-18 Score=154.97 Aligned_cols=137 Identities=22% Similarity=0.278 Sum_probs=111.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
.||+|+|++|||||||++++..+.+...+.++....+. ..+.+.+....+.+||++|++.+.... ..+++.+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLR--PLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccc--hhhcCCCCEEEE
Confidence 59999999999999999999988887776676655544 455666556677899999998877655 457799999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCC-----------ccCcHHHHHHHHHHhCC-ccc
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS-----------FAMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~-----------~~v~~~~~~~~~~~~g~-~~f 429 (430)
|||++++++|+.+. .|+..+.... +++|+++||||+|+.+ +.+..+++..+++++|+ +||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 99999999999997 5888887643 2699999999999854 23556889999999985 565
No 115
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=1.9e-18 Score=153.33 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=103.3
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|.+|||||||++++.+..+.. +.||.+..+. .+... ...+.+||++|++.+...+ ..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~--~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLW--KHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHH--HHHhccCCEEEEE
Confidence 68999999999999999999987754 5577776553 34433 5778899999998888877 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHH
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 423 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~ 423 (430)
||++++++|.++..|+..+...... .+.|+++|+||+|+.+ .+..+++.++++.
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~~~~~~~~ 127 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAG-ALSVEEMTELLSL 127 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCccc-CCCHHHHHHHhCC
Confidence 9999999999999999998765322 2589999999999975 4666777777653
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=2.8e-18 Score=152.79 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=101.2
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+||+++|++|||||||++++.+..+. .+.||.+.. ...+.+. ...+.+||++|++.+..++ ..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~~d~ 84 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYW--RNYFESTDA 84 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence 34579999999999999999999988654 344676643 3455554 3677899999999888887 678999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHH
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 421 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~ 421 (430)
+++|||++++.+|..+..|+..+...... .++|+++|+||+|+.+.. ..+++.++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~-~~~~~~~~~ 140 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERL--AGATLLILANKQDLPGAL-SEEEIREAL 140 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECcccccCC-CHHHHHHHh
Confidence 99999999999999998898887653221 379999999999997633 445555554
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.78 E-value=3.8e-18 Score=151.19 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=97.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
+|+++|++|||||||++++.+. +...+.||.+... ..+... ...+.+||++|++.+..++ ..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~--~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIW--VNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHH--HHHHcCCCEEEEE
Confidence 4899999999999999999977 6666668887653 344444 4778899999999999888 7899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
||++++.++..+..|+..+...... .++|+++|+||+|+.+..
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRV--SGKPILVLANKQDKKNAL 116 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccc--cCCcEEEEEeCCCCcCCC
Confidence 9999999999999999998765322 268999999999998743
No 118
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.78 E-value=9.6e-19 Score=145.76 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=86.3
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCC--CCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFS--DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~--~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
||+|+|++|||||||+++|++..+. ..+.++.+.++.............+.+||+.|++.+...+ ...+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--QFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--HHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--cchhhcCcEEE
Confidence 7999999999999999999998876 2223455556665666666556668899999998877665 44589999999
Q ss_pred EEEECCChhhHHHHHHH---HHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 365 FVHDSSDESSWKRATEL---LVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~---l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
+|||+++++||+++..+ +..+.... .++|++|||||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~----~~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRD----KNIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHS----SCSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccC----CCCCEEEEEeccC
Confidence 99999999999987554 55555432 2699999999998
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=6.8e-18 Score=149.29 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=99.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+ ++....+. ....+.+....+.+||++|.+.+...+ ..+++.+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPEIT-IPADVTPERVPTTIVDTSSRPQDRANL--AAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccceE-eeeeecCCeEEEEEEeCCCchhhhHHH--hhhcccCCEEEE
Confidence 48999999999999999999999987664 33333332 333455567788899999998877665 566799999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCc---HHHHHHHHHHh
Q 014101 366 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA---IQDSTRVFTFL 424 (430)
Q Consensus 366 v~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~---~~~~~~~~~~~ 424 (430)
|||++++.||+.+. .|+..+.... .++|+++|+||+|+.+.... .++...+++++
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 135 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLG----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF 135 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH
Confidence 99999999999986 5777776543 26899999999999875432 33444444444
No 120
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.78 E-value=7.7e-19 Score=135.07 Aligned_cols=86 Identities=58% Similarity=1.076 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCccCCCcCHHhHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccC-CCCcccCCCC
Q 014101 89 SPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELI-PYSAFKRAPD 167 (430)
Q Consensus 89 ~~~~~~e~~~i~~~~~~~~~~d~~~~gi~~~eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~-~~~~~~~~~~ 167 (430)
.|++.+++..|++.+.+..+++++.+|||+++|+.++++|+++||+|++|++||+|||+++|.+.++++ | .++++++
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p--~l~v~~~ 79 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP--KLDVPPD 79 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC--CccCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 8 7999999
Q ss_pred CccccCHHH
Q 014101 168 QSVELTNEA 176 (430)
Q Consensus 168 ~~~~~s~~~ 176 (430)
+++|+|+.+
T Consensus 80 ~svELS~~g 88 (89)
T PF08356_consen 80 QSVELSPEG 88 (89)
T ss_pred CeeecCcCc
Confidence 999999865
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.77 E-value=6.4e-18 Score=148.25 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=95.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCC-CCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~-~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+|+++|++|||||||++++.+..+ ...+.||.+.... .+.. +...+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLW--EHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHH--HHHHccCCEEEE
Confidence 589999999999999999998763 4455677775443 2332 35778899999999999888 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|+|++++.++..+..|+..+.........++|+++|+||+|+.+.
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999999999999999988876542221237999999999999763
No 122
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.4e-18 Score=143.10 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=120.0
Q ss_pred cccCCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHH
Q 014101 46 QESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFL 124 (430)
Q Consensus 46 ~~~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~ 124 (430)
+....+++++.+.++.+|..||.|++|+|..+||+.++ +|+|..+..+|+..|+..+ |.++.| |+|++|...
T Consensus 22 ~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAm-ralGFE~~k~ei~kll~d~------dk~~~g~i~fe~f~~~ 94 (172)
T KOG0028|consen 22 SPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAM-RALGFEPKKEEILKLLADV------DKEGSGKITFEDFRRV 94 (172)
T ss_pred CCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHH-HHcCCCcchHHHHHHHHhh------hhccCceechHHHHHH
Confidence 34567899999999999999999999999999998884 5789999999999999998 556778 999999998
Q ss_pred HHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhh
Q 014101 125 HALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLF 204 (430)
Q Consensus 125 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~ 204 (430)
|...+.. ....+.++.+|+.||-|++|.||+.+|+.+.
T Consensus 95 mt~k~~e------------------------------------------~dt~eEi~~afrl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 95 MTVKLGE------------------------------------------RDTKEEIKKAFRLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HHHHHhc------------------------------------------cCcHHHHHHHHHcccccCCCCcCHHHHHHHH
Confidence 7643311 1124568899999999999999999999999
Q ss_pred ccCCCCCC--CCCcccccccccCCcccchhhHHhhh
Q 014101 205 STAPECPW--DEAPYKDAAEKTALGGLSLDGFLSEW 238 (430)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~d~~~dg~i~~~ef~~~w 238 (430)
...+...- +..+|++++|.|+||.|+-+||+.-.
T Consensus 133 keLgenltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 133 KELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHhCccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 88755332 22467899999999999999998753
No 123
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.76 E-value=1.2e-17 Score=149.04 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.++.+.. +.||.+.++. .+... ...+.+||++|++.+...+ ..+++.+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSW--NTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHH--HHHhhcCCEE
Confidence 35799999999999999999999888775 4577776653 33433 4678899999999988887 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++|+|+++++++..+..++..+...... .++|+++|+||+|+.+
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~--~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDL--RKAVLLVLANKQDLKG 130 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECCCCCC
Confidence 9999999999999888888887654322 2689999999999976
No 124
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=2.2e-17 Score=144.71 Aligned_cols=115 Identities=25% Similarity=0.272 Sum_probs=95.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
+|+++|++|||||||+++|.++.+... .||.+..+ ..+..+ +...+.+||++|++.+...+ ..+++.+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~--~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVW--KCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHH--HHHhccCCEEEEE
Confidence 589999999999999999999988654 47776544 445544 45778899999999888877 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+|++++.++..+..|+..+...... .+.|+++|+||+|+..
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 115 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPG 115 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECccccc
Confidence 9999999999999998887654321 2699999999999965
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=6.3e-17 Score=145.72 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=97.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..++|+++|.+|||||||++++.++.+.. +.||.+... ..+... ...+.+||++|++.+..++ ..+++++|++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~--~~~~~~ad~i 88 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLW--KDYFPEVNGI 88 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCEE
Confidence 34799999999999999999999987754 346655433 334443 3677899999999888888 6889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHH
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDST 418 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~ 418 (430)
++|+|+++++++.....++..+...... .++|+++|+||+|+.. .++.++..
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~-~~~~~~i~ 140 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEEL--ATVPFLILGNKIDAPY-AASEDELR 140 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhh--cCCCEEEEEeCccccC-CCCHHHHH
Confidence 9999999999999999888887654222 2689999999999875 34444433
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=8.7e-17 Score=140.66 Aligned_cols=116 Identities=25% Similarity=0.241 Sum_probs=95.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|.+|||||||++++++..+. ...++.+... ..+.+. ...+.+||++|++.+...+ ..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLW--KHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHH--HHHhccCCEEEEE
Confidence 6899999999999999999999843 3446666544 344444 4678899999999988887 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
||+++++++.....|+..+...... .+.|+++|+||+|+....
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEEL--KGVPLLIFANKQDLPGAL 116 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCccc--CCCcEEEEeeccCCcccc
Confidence 9999999999999999887765322 378999999999998743
No 127
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=8e-17 Score=141.10 Aligned_cols=115 Identities=20% Similarity=0.175 Sum_probs=91.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
||+++|++|||||||++++..+.+.. +.||++.++. .+... ...+.+||++|.+.+..++ ..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYW--RCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHH--HHHhcCCCEEEEE
Confidence 68999999999999999998887754 3477766543 34433 4678899999999998887 6789999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+|++++.++.....++..+.+.... .++|+++|+||+|+.+.
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA 115 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC
Confidence 9999998988877777665443211 26899999999999753
No 128
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=147.98 Aligned_cols=121 Identities=27% Similarity=0.341 Sum_probs=106.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|++|||||||+++|.++.+...+.+|++..+........+......+||++|++.++.++ ..++..++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~--~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR--PEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH--HHHhcCCCEEEE
Confidence 899999999999999999999999999998898887777766666557788999999999999998 789999999999
Q ss_pred EEECCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 366 VHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 366 v~D~t~-~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
|||.++ ..+++....|...+...... ..|+++|+||+|+....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccch
Confidence 999999 55666678899888876532 68999999999998864
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=1.9e-16 Score=143.07 Aligned_cols=130 Identities=23% Similarity=0.270 Sum_probs=103.3
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..+||+++|++|||||||++++.++.+. .+.||.+... ..+.+. ...+.+||++|++.+...+ ..+++.+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~i 90 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLW--KDYFPEVDGI 90 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 3579999999999999999999988875 3446666543 345555 3567899999999888877 6788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHH
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 423 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~ 423 (430)
++|+|++++++|.....|+..+...... .+.|+++|+||+|+.. .+..++.+++++.
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~ 147 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEEL--ANVPFLILGNKIDLPG-AVSEEELRQALGL 147 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccc--cCCCEEEEEeCCCCCC-CcCHHHHHHHhCc
Confidence 9999999999999988898888764322 2689999999999975 5556667666653
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=1.2e-16 Score=141.01 Aligned_cols=127 Identities=22% Similarity=0.330 Sum_probs=96.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCC------CCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPF------SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~------~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
+|+++|++|||||||++++.+... ...+.+|.+..+ ..+.++ ...+.+||++|++.+..++ ..+++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLW--DKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHH--HHHhCCC
Confidence 589999999999999999976432 223345655555 334444 4678899999999988877 6788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHH
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 422 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~ 422 (430)
|++++|+|+++++++.....|+..+...... .++|+++|+||+|+... ....+..++.+
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~D~~~~-~~~~~~~~~~~ 133 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEAL--EGVPLLILANKQDLPDA-LSVEEIKEVFQ 133 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhh--cCCCEEEEEEccccccC-CCHHHHHHHhc
Confidence 9999999999999999999998887764322 26899999999998763 44444554443
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.71 E-value=2.7e-16 Score=136.60 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=97.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 366 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv 366 (430)
.|+++|++|||||||++++.+.++...+.|+.+.++. .+..+ ...+.+||++|.+.+...+ ..+++.+|++++|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v 74 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMW--ERYCRGVNAIVYV 74 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHH--HHHHhcCCEEEEE
Confidence 3799999999999999999999998888888877654 33433 3778899999999988887 6788999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 367 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 367 ~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+|++++.++.....|+..+...... .++|+++|+||+|+.+.
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 75 VDAADRTALEAAKNELHDLLEKPSL--EGIPLLVLGNKNDLPGA 116 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHcChhh--cCCCEEEEEeCccccCC
Confidence 9999999999988888887654322 26899999999998764
No 132
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.71 E-value=2e-16 Score=133.51 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=108.2
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.++|+++|..|+||||++++|.+.+..... ||.| |.++++.++ ...+.+||..|+..+++.| +.|+..+|++|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~-pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~W--~nYfestdglI 88 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS-PTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSYW--KNYFESTDGLI 88 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC-Cccc--eeeEEEEec--ceEEEEEEcCCcchhHHHH--HHhhhccCeEE
Confidence 689999999999999999999998855444 7766 455777777 4678899999999999999 89999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCc-----HHHHHHHHHHhCCccc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-----IQDSTRVFTFLVMVLY 429 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~-----~~~~~~~~~~~g~~~f 429 (430)
+|+|.+|+.++++....+..+....... ..|+++++||.|++..-.. .....+++++++.+.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 9999999999999888887766643332 5899999999999853111 2344555566666554
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.70 E-value=7.3e-17 Score=138.71 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=85.4
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh-----hHHHhhhcccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-----e~~~~~~~~~~~~~~ad 361 (430)
||+++|++|||||||+++|.+..+. +.+|.+.++ .+ .+||++|. +.+..+. ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~~-----~~iDt~G~~~~~~~~~~~~~---~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------ND-----GAIDTPGEYVENRRLYSALI---VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------cC-----eeecCchhhhhhHHHHHHHH---HHhhcCC
Confidence 8999999999999999999988763 334443322 21 47899997 2344443 3589999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC-ccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~-~~f 429 (430)
++++|||++++.++.. ..|...+ ..|+++|+||+|+.+..+..+++.++++..+. ++|
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~~---------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASIF---------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIF 123 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHhc---------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEE
Confidence 9999999999998765 3343321 24999999999997755667788888888776 454
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=6.6e-16 Score=141.29 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=88.0
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChh---------HHHhhhc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE---------AVAKLLS 352 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e---------~~~~~~~ 352 (430)
.++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+++ ...+.+||++|.. .+...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~-- 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRST-- 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHH--
Confidence 35568999999999999999999999875433323333333444555553 3367889999962 22222
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
...+..+|++++|+|++++.++..+..|...+..... .++|+++|+||+|+.+.
T Consensus 115 -~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 115 -LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDD 168 (204)
T ss_pred -HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCCh
Confidence 2346789999999999999888887777766655432 26899999999999764
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=3.4e-16 Score=138.43 Aligned_cols=140 Identities=19% Similarity=0.071 Sum_probs=93.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChh----HHHhhhc-ccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----AVAKLLS-NKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e----~~~~~~~-~~~~~~~ad 361 (430)
+|+++|.+|||||||++++.+........+..+.......+... +...+.+|||+|.. ....+.. ....+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999876532222222222333344444 33467899999963 1111110 012345699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHh-CCcc
Q 014101 362 IAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL-VMVL 428 (430)
Q Consensus 362 ~vilv~D~t~~-~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~-g~~~ 428 (430)
++++|+|++++ ++++.+..|++.+...... ..+.|+++|+||+|+.+.....+....+.... +.++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE-LLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc-ccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 99999999999 8999999999888765421 12689999999999977554445555565553 4444
No 136
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.68 E-value=5e-16 Score=142.06 Aligned_cols=121 Identities=22% Similarity=0.320 Sum_probs=91.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccc-cEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC-DIAVF 365 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a-d~vil 365 (430)
+|+++|++|||||||+++|..+.+..++. ++...........++....+.+||++|+..++..+ ..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--LETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccC-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHH--HHHHhccCCEEEE
Confidence 68999999999999999999998876653 33333332222222334668899999999998777 6788888 99999
Q ss_pred EEECCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 366 VHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 366 v~D~t~~-~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|+|+++. +++..+..|+..+........+.+|+++|+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999987 78888888887765432211237999999999999764
No 137
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.67 E-value=7.9e-16 Score=137.43 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=103.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|..||||||+++++..+.... ..||.|.+. ..+... ...+.+||..|+..++.+| ..++.++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w--~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLW--KSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGG--GGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeC--cEEEEEEeccccccccccc--eeeccccce
Confidence 567899999999999999999999876554 447776544 556665 3667899999999999999 789999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHH
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTR 419 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~ 419 (430)
+|||+|+++++.+.+....+..+...... .++|+++++||+|+.+ ....++...
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~-~~~~~~i~~ 138 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPEL--KDIPILILANKQDLPD-AMSEEEIKE 138 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTT-SSTHHHHHH
T ss_pred eEEEEecccceeecccccchhhhcchhhc--ccceEEEEeccccccC-cchhhHHHh
Confidence 99999999999999999999888875433 2799999999999887 333444443
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=1.8e-15 Score=134.30 Aligned_cols=117 Identities=26% Similarity=0.329 Sum_probs=93.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..++|+++|++|||||||++++.+..+.. ..++.+.+. ..+...+ ..+.+||++|+..+...+ ..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~--~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYW--RNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHH--HHHhcCCCEE
Confidence 35899999999999999999999987654 346666443 4455552 567899999998887776 5778999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++|+|+++..++.....|+..+...... .++|+++++||+|+.+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCcc
Confidence 9999999999999888888777654322 2699999999999866
No 139
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.66 E-value=1.3e-15 Score=150.09 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=90.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh---------hHHHhhhcc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLSN 353 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~---------e~~~~~~~~ 353 (430)
...++|+++|.+|||||||+|++++........+..+.+.....+.++++ ..+.+|||+|. +.|...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t--- 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT--- 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH---
Confidence 35689999999999999999999998754444444455566677777633 46789999996 233332
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
...+.++|++++|+|++++.++..+..|...+..... .+.|+++|+||+|+.+
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~---~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA---EDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc---CCCCEEEEEEeecCCC
Confidence 2467899999999999999888877666555544332 2689999999999975
No 140
>PTZ00184 calmodulin; Provisional
Probab=99.66 E-value=7.8e-16 Score=133.10 Aligned_cols=140 Identities=19% Similarity=0.321 Sum_probs=111.2
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
.++++++.+.+++.|..+|.|++|.|+.+||..++.. +|.++..+++..+++.+ |.+++| |+|++|+.++..
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~------d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEV------DADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhc------CcCCCCcCcHHHHHHHHHH
Confidence 3588999999999999999999999999999998765 47777888899999888 567788 999999987542
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccC
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 207 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~ 207 (430)
+... ....+.+..+|+.||.||+|.|+.+|+..++...
T Consensus 76 ~~~~------------------------------------------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 76 KMKD------------------------------------------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred hccC------------------------------------------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 2100 0112347789999999999999999999998764
Q ss_pred CC-CC-CCCCcccccccccCCcccchhhHHhh
Q 014101 208 PE-CP-WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 208 ~~-~~-~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
+. .+ .....+...+|.+++|.|+++||+..
T Consensus 114 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 114 GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 22 11 11234667899999999999999865
No 141
>PTZ00183 centrin; Provisional
Probab=99.66 E-value=1.2e-15 Score=133.43 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=113.2
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
..+++.++++++++|..+|.|++|.|+.+||..++..+ |..++.+++..++..+ |.+++| |+|++|+.++..
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~------d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADV------DKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHh------CCCCCCcEeHHHHHHHHHH
Confidence 45889999999999999999999999999999998765 7778888999999998 677888 999999987542
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccC
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 207 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~ 207 (430)
.... ....+.++.+|+.||.|++|.|+.+||..++...
T Consensus 82 ~~~~------------------------------------------~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 82 KLGE------------------------------------------RDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HhcC------------------------------------------CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 1100 0012457899999999999999999999998764
Q ss_pred CCCC--CCCCcccccccccCCcccchhhHHhhh
Q 014101 208 PECP--WDEAPYKDAAEKTALGGLSLDGFLSEW 238 (430)
Q Consensus 208 ~~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w 238 (430)
+... .....+...+|.|++|.|++++|....
T Consensus 120 ~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 120 GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3211 122346678999999999999998764
No 142
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.65 E-value=7.7e-16 Score=128.08 Aligned_cols=136 Identities=15% Similarity=0.270 Sum_probs=111.0
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
..++..|+++++++|.++|.|+||.|..++|+.++.. +|...++++++.+++.. +| |+|.-||.++..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~Ea----------~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS-LGKIASDEELDAMMKEA----------PGPINFTVFLTMFGE 92 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhC----------CCCeeHHHHHHHHHH
Confidence 3478899999999999999999999999999999876 57779999999999885 35 999999999764
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccC
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 207 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~ 207 (430)
.+..- ..++.+..||+.||.+|.|.|..+.|++++...
T Consensus 93 kL~gt------------------------------------------dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 93 KLNGT------------------------------------------DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HhcCC------------------------------------------CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh
Confidence 33111 123458899999999999999999999999874
Q ss_pred CC--CCCCCCcccccccccCCcccchhhHHhh
Q 014101 208 PE--CPWDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 208 ~~--~~~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
+. .+.+.+.+.+.+-.|..|.|+|.+|...
T Consensus 131 gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 131 GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 33 1123345667888889999999998765
No 143
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=1.9e-15 Score=135.04 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=93.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCC-------CCCCcCC------CccceEEEEEEEc-----CCCeEEEEEEeCCChhHHH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTP------TTDERYAVNVVDQ-----PGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~-------~~~~~~~------t~~~~~~~~~v~~-----~~~~~~~~i~d~~G~e~~~ 348 (430)
+|+++|.+|||||||+++|++.. +...+.+ +.+.++....+.+ ++....+.+|||+|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1112222 2233444333322 4456778899999999988
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
..+ ..+++.+|++++|||+++..++.....|.... . .++|+++|+||+|+.+.. ......++++.++++
T Consensus 82 ~~~--~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~ 150 (179)
T cd01890 82 YEV--SRSLAACEGALLLVDATQGVEAQTLANFYLAL-E------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLGLD 150 (179)
T ss_pred HHH--HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCC
Confidence 877 67889999999999999877776666664332 1 168999999999996532 234456777777764
No 144
>PTZ00099 rab6; Provisional
Probab=99.65 E-value=2.4e-15 Score=134.30 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=102.1
Q ss_pred CCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHh
Q 014101 308 RPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVAS 387 (430)
Q Consensus 308 ~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~ 387 (430)
+.|...+.||++.++..+.+.++++...+.+|||+|++.+..++ ..+++++|++|+|||+++++||+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~--~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI--PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhcc--HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45677788999999988888888888889999999999999887 7889999999999999999999999999999876
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 388 YGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 388 ~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
... +++|++|||||+|+... .+..+++..+++.+++.||
T Consensus 81 ~~~---~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 81 ERG---KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred hcC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 542 36899999999999753 5778899999999888765
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=3.1e-15 Score=129.30 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=102.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||++|+..+..++ ....+.+++++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--RLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhhhEEEE
Confidence 699999999999999999999999777777788887777667776444677899999998888776 567788999999
Q ss_pred EEECCCh-hhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHH
Q 014101 366 VHDSSDE-SSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 422 (430)
Q Consensus 366 v~D~t~~-~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~ 422 (430)
++|+... .++.... .|...+...... +.|+++|+||+|+............+..
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 135 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAKLKTHVAFLFAK 135 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcchhhHHHHHHHhh
Confidence 9999877 7777655 677666665432 6899999999999875533333333333
No 146
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.64 E-value=4.4e-15 Score=123.76 Aligned_cols=142 Identities=21% Similarity=0.261 Sum_probs=110.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCC--cCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN--YTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~--~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
...||+|+|..+||||+++.+++.+...+. ..||++..| +..++.+ |....+.++||+|-.......+ ..|+.-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLp-rhy~q~a 85 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELP-RHYFQFA 85 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhh-HhHhccC
Confidence 457999999999999999999987765443 346776544 4566655 4456777999999765522221 6788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhCCccc
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g~~~f 429 (430)
|++++||+..|++||+.+..+-++|.+.... ..+||++++||+|+.+. ++..+-|+.||++-.+.+|
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdK--KEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~ 153 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDK--KEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLW 153 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhcccc--ccccEEEEechhhcccchhcCHHHHHHHHhhhheeEE
Confidence 9999999999999999888777777664433 37999999999999765 4778999999999887765
No 147
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.63 E-value=4.9e-15 Score=129.92 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=77.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCC---CCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~---~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
.|+++|++|||||||++++++.. +.....++.+.+.....+.+.+ ...+.+|||+|++.+.... ..+++.+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~--~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNM--LAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHH--HhhhhcCCEE
Confidence 58999999999999999999743 3222223334444434455542 3567899999998887654 4678899999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 364 VFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 364 ilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
++|+|+++ +++...+. .+.... ..|+++|+||+|+...
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~~~-----~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILELLG-----IKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHHhC-----CCcEEEEEECccccCH
Confidence 99999987 34443332 222211 2489999999999764
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.63 E-value=2.2e-15 Score=136.82 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=90.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhC--CCCCCCc------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLG--RPFSDNY------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS 352 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~--~~~~~~~------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~ 352 (430)
+|+++|.+|||||||+++|++ +.+...+ .++.+.++......+..+...+.+||++|++.|....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~- 82 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV- 82 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH-
Confidence 899999999999999999996 4443322 1234444444444454456788899999999998877
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccC--cHHHHHHHHH
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--AIQDSTRVFT 422 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v--~~~~~~~~~~ 422 (430)
..+++.+|++++|||+++. .+.....++..+... ++|+++|+||+|+..... ..+++.++..
T Consensus 83 -~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 146 (194)
T cd01891 83 -ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFI 146 (194)
T ss_pred -HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999873 333444455544332 589999999999975432 2345555543
No 149
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=127.39 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=122.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
-.+||.++|++.+|||||+-++.++.+...+..+.|.++..+++.+.|....+.|||..|++++..+. +....++-++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~l--Piac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINML--PIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccC--ceeecCcEEE
Confidence 35799999999999999999999999988887899999999999999888999999999999999988 7888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc------cCcHHHHHHHHHHhCCccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF------AMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~------~v~~~~~~~~~~~~g~~~f 429 (430)
+++||++.++++..+.+|+.+.+..+.. -+| |+||+|.|+--+ .....+++.+|+.+++++|
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLF 164 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999998876643 466 578999997432 1236789999999998865
No 150
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.62 E-value=9.2e-15 Score=129.08 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=87.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHH----------Hhhhccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----------AKLLSNKDS 356 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~----------~~~~~~~~~ 356 (430)
+|+++|.+|||||||++++.+..+.....+..+.......+... ...+.+|||+|.... ..+. ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~---~~ 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAIT---AL 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHH---HH
Confidence 79999999999999999999988754332322333333333333 467889999997321 1110 11
Q ss_pred cccccEEEEEEECCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 357 LAACDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 357 ~~~ad~vilv~D~t~~~S~--~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
...+|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+...... .+..++++..+.++|
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 146 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVL 146 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCchhhH-HHHHHhhhhccCceE
Confidence 1236899999999987654 66667888776542 26899999999999764321 225555555555544
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=4.5e-15 Score=150.44 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=95.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhh------cccc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKD 355 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~------~~~~ 355 (430)
++.+||+++|++|||||||+|+|++..... ...|+++.++....+.+++ ..+.+|||+|........ ....
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 566899999999999999999999876532 2335555666666677764 446799999974433211 1246
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 356 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 356 ~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
+++.+|++++|||++++.+++.. |+..+... +.|+++|+||+|+... +...+++.++++++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~~~ 339 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLNSS 339 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCceE
Confidence 78999999999999998887765 76665432 5899999999999753 23455666666543
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=4.6e-15 Score=129.36 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=91.2
Q ss_pred EeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh------hcccccc--cccc
Q 014101 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDSL--AACD 361 (430)
Q Consensus 290 vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~------~~~~~~~--~~ad 361 (430)
++|.+|||||||++++.+........++.+.+.....+.+++ ..+.+|||+|.+.+... . ..++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVA--RDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHH--HHHhcCCCCc
Confidence 589999999999999999875555556666666666677764 46789999998665432 2 2334 4899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
++++|+|++++++.. .|+..+... ++|+++|+||+|+.+..........+++.++++++
T Consensus 77 ~vi~v~d~~~~~~~~---~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (158)
T cd01879 77 LIVNVVDATNLERNL---YLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV 135 (158)
T ss_pred EEEEEeeCCcchhHH---HHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE
Confidence 999999998765432 344444432 58999999999997754333445678888887665
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=7.8e-15 Score=143.50 Aligned_cols=141 Identities=15% Similarity=0.085 Sum_probs=100.9
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH-------HHhhhcccccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSL 357 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-------~~~~~~~~~~~ 357 (430)
...|.+||.||||||||++++++.+......|.++.......+.+. ....+.+||++|... +...+ ..++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~f--lrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRF--LKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHH--HHHh
Confidence 3479999999999999999999876554444545555555566664 345678999998521 11111 3466
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHHHhCCccc
Q 014101 358 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 358 ~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~~~g~~~f 429 (430)
+.++++++|+|+++.++++.+..|..++..+.... .+.|+++|+||+|+.+.. +.....+.+++..+.++|
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L-~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~ 306 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL-ADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVF 306 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc-ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEE
Confidence 78999999999999889999999999988764311 268999999999997643 333455556666655543
No 154
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=2e-15 Score=130.77 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=93.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH------HHhhhccccc--c
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA------VAKLLSNKDS--L 357 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~------~~~~~~~~~~--~ 357 (430)
++|+++|.||||||||+|++++.+......|..+.+.....+.+.+ ..+.++|+||-.. .+.+. ..+ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~--~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVA--RDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHH--HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHH--HHHHhh
Confidence 5899999999999999999999997766668888888777787774 7778899999321 11222 223 3
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 358 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 358 ~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
.+.|+++.|.|+++.+ .-.....++... ++|+|+|.||+|+..+.....+...+++.+|+|.+
T Consensus 77 ~~~D~ii~VvDa~~l~---r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLE---RNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVI 139 (156)
T ss_dssp TSSSEEEEEEEGGGHH---HHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EE
T ss_pred cCCCEEEEECCCCCHH---HHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEE
Confidence 6899999999998743 323344445443 68999999999998876545568888999998754
No 155
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.3e-15 Score=129.51 Aligned_cols=119 Identities=24% Similarity=0.236 Sum_probs=103.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
....+|+++|-.|+||||+++++..+++..+ .||+|... ..+.+. ...+.+||..|++.++.+| ..|+++.++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~yk--n~~f~vWDvGGq~k~R~lW--~~Y~~~t~~ 87 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYK--NISFTVWDVGGQEKLRPLW--KHYFQNTQG 87 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEc--ceEEEEEecCCCcccccch--hhhccCCcE
Confidence 4568999999999999999999999988777 48988544 566666 5788899999999999999 899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+|||+|.+|++.+.+..+-+..+...... .+.|+++.+||.|++..
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhcccc
Confidence 99999999999999999988888876543 37999999999999883
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=1.1e-14 Score=142.23 Aligned_cols=143 Identities=17% Similarity=0.050 Sum_probs=100.3
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH----HHhhh-cccccccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAA 359 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~----~~~~~-~~~~~~~~ 359 (430)
...|++||.+|||||||++++++........|.++.......+.++ +...+.+||++|... ...+. .....+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 3579999999999999999999876544444544444555556665 346678999998631 11111 00234567
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 360 CDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 360 ad~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
++++++|+|+++. ++++.+..|..++..+.... .+.|+++|+||+|+.+.....+..++++++++.+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l-~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi 307 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL-AEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVF 307 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh-ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEE
Confidence 9999999999986 68888888888877653211 268999999999998754444566677777665544
No 157
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.59 E-value=3.2e-15 Score=123.73 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=109.3
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
.....+.+.++|..++|||||+|....+.+...-.||.|.+. ..+..+...+.+||.+|+.+|+++| ..|++.+
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmW--erycR~v 89 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMW--ERYCRGV 89 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHH--HHHhhcC
Confidence 345568999999999999999999999888777778887643 3344467888899999999999999 8999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
+++++|+|+.+++.+...++-+..+....... .+|++++|||.|+++. -...++..++|.
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~A----L~~~~li~rmgL 149 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPGA----LSKIALIERMGL 149 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCccc----ccHHHHHHHhCc
Confidence 99999999999999998888888877765553 7999999999999883 223444455554
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.58 E-value=1.8e-14 Score=137.72 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=85.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHH-----Hhhh-ccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-----AKLL-SNKDSLAAC 360 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~-----~~~~-~~~~~~~~a 360 (430)
+|+++|.+|||||||+|++++.++...+..+.++......+...+ ...+.+|||+|.... ..+. ....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999987654432222222334444442 345789999995321 1111 113567899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 361 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
|++++|+|+++..+.. ..++..+... +.|+++|+||+|+............++...+
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 137 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILED 137 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcC
Confidence 9999999999876664 3334444332 6899999999999754333445555555444
No 159
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=2.7e-14 Score=144.05 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=87.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHH------Hhhhccccccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV------AKLLSNKDSLA 358 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~------~~~~~~~~~~~ 358 (430)
..+|+++|.+|||||||+|++++........+..+.+.....+.+++ .....+|||+|.... ..+......++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 46899999999999999999999876654445555566656677764 335678999996321 11111235578
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 359 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 359 ~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+|++++|+|++++.++..+..|...+..... .++|+++|+||+|+.+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~---~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDA---HEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc---CCCCEEEEEEcccCCC
Confidence 99999999999999888776544443333221 2689999999999975
No 160
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=7.3e-14 Score=119.27 Aligned_cols=135 Identities=22% Similarity=0.324 Sum_probs=98.0
Q ss_pred EeCCCCCCHHHHHHHHhCCCC-CCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEE
Q 014101 290 VFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 368 (430)
Q Consensus 290 vvG~~~vGKSSLi~~l~~~~~-~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D 368 (430)
|+|++|+|||||++++.+... .....++. .++........+....+.+||++|...+.... ...++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--RLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH--HHHhcCCCEEEEEEE
Confidence 589999999999999999887 44444555 66666666665556788899999988777665 567799999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHH--HHHHHHHhCCccc
Q 014101 369 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQD--STRVFTFLVMVLY 429 (430)
Q Consensus 369 ~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~--~~~~~~~~g~~~f 429 (430)
++++.++.....|+......... .+.|+++|+||+|+......... ........+.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEG--ENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYF 138 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhcc--CCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEE
Confidence 99999999888873222222111 37999999999999875433222 3444444455544
No 161
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.56 E-value=2e-15 Score=113.29 Aligned_cols=70 Identities=53% Similarity=0.971 Sum_probs=65.6
Q ss_pred CCCCCcccccccccCCcccchhhHHhhhhhhhhcCHHHHHHHHHHhcCCC-----CcchhhHHhhHHHHHHhhhh
Q 014101 211 PWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPG-----DPSSAIRVTRKRRIDRKKQQ 280 (430)
Q Consensus 211 ~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~~~~~~~~~~~l~y~G~~~-----~~~~a~~~t~~r~~~~~~~~ 280 (430)
||....+...+.+|.+|.||+++|+++|.+++++||+.++++|+|+||++ ++.+|++++|+|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 68667788899999999999999999999999999999999999999998 89999999999999988764
No 162
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.3e-15 Score=127.40 Aligned_cols=123 Identities=16% Similarity=0.236 Sum_probs=111.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
...+|++++|..|.|||+++++...+.|..++.+|.|..........+.+...+..|||+|+|.+-.+. ..++-.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr--dgyyI~~qc 85 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR--DGYYIQGQC 85 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc--cccEEecce
Confidence 357899999999999999999999999999999999998877666666677899999999999988877 788889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
+|++||++..-...++.+|..++.+.+. ++|||++|||.|...++
T Consensus 86 AiimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 86 AIIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK 130 (216)
T ss_pred eEEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc
Confidence 9999999999999999999999988874 79999999999998854
No 163
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=3.9e-14 Score=124.90 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=82.8
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
.|+++|.+|||||||+++|.+..+...+.++.+.+.....+... +....+.+|||+|++.+..++ ...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--ARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--HHHHhhcCEEEE
Confidence 58999999999999999999988776654444444444444443 134667899999998888777 567789999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|+|+++...... ...+..+... ++|+++|+||+|+...
T Consensus 80 v~d~~~~~~~~~-~~~~~~~~~~------~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 80 VVAADDGVMPQT-IEAIKLAKAA------NVPFIVALNKIDKPNA 117 (168)
T ss_pred EEECCCCccHHH-HHHHHHHHHc------CCCEEEEEEceecccc
Confidence 999987432111 1122222222 6899999999999753
No 164
>PRK04213 GTP-binding protein; Provisional
Probab=99.55 E-value=2.2e-14 Score=130.84 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=83.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC-----------hhHHHhhhc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAKLLS 352 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G-----------~e~~~~~~~ 352 (430)
..++|+++|.+|||||||++++.+..+.....|+. ++....+.+. .+.+|||+| ++.++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI- 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH-
Confidence 45799999999999999999999988765444433 3333344333 478999999 56666654
Q ss_pred ccccc----ccccEEEEEEECCChhhH-H---------HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHH
Q 014101 353 NKDSL----AACDIAVFVHDSSDESSW-K---------RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDST 418 (430)
Q Consensus 353 ~~~~~----~~ad~vilv~D~t~~~S~-~---------~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~ 418 (430)
..++ ..++++++|+|.++...+ . .....+..+.. .++|+++|+||+|+.+.. .+.+.
T Consensus 81 -~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~--~~~~~ 151 (201)
T PRK04213 81 -VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE------LGIPPIVAVNKMDKIKNR--DEVLD 151 (201)
T ss_pred -HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH------cCCCeEEEEECccccCcH--HHHHH
Confidence 3333 346788888887643221 0 01112222222 168999999999997643 45677
Q ss_pred HHHHHhCC
Q 014101 419 RVFTFLVM 426 (430)
Q Consensus 419 ~~~~~~g~ 426 (430)
++++.+++
T Consensus 152 ~~~~~~~~ 159 (201)
T PRK04213 152 EIAERLGL 159 (201)
T ss_pred HHHHHhcC
Confidence 78888776
No 165
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=1.3e-13 Score=123.48 Aligned_cols=131 Identities=18% Similarity=0.121 Sum_probs=85.1
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhh
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 351 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~ 351 (430)
.+..++|+++|.+|||||||++++++..+.....++.+.+.....+..+ + .+.+||++|. +.+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3566899999999999999999999987444444555555544444444 2 4779999993 2333332
Q ss_pred ccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc---CcHHHHHHHHHHh
Q 014101 352 SNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFL 424 (430)
Q Consensus 352 ~~~~~~~---~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~---v~~~~~~~~~~~~ 424 (430)
..+++ .++++++|+|++++-+.... .++..+... +.|+++|+||+|+.... ...+++++.++..
T Consensus 92 --~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 92 --EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred --HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 23443 46899999999875444443 222333222 68999999999997532 1234455555544
No 166
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-13 Score=113.74 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=103.1
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
..++|+++|-.++||||++.++.-+....+. ||+| |.+.++++. ..++.+||..|++..+.+| ..|+....++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~i-pTvG--FnvetVtyk--N~kfNvwdvGGqd~iRplW--rhYy~gtqgl 88 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPLW--RHYYTGTQGL 88 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccc-cccc--eeEEEEEee--eeEEeeeeccCchhhhHHH--HhhccCCceE
Confidence 3589999999999999999999877655443 7766 555777776 4788899999999999999 8999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHH
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRV 420 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~ 420 (430)
|||.|..+.+..++++.-+..+...... .+.|+++.+||.|+++.. .++++.++
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A~-~pqei~d~ 142 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREM--RDAIILILANKQDLPDAM-KPQEIQDK 142 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhh--hcceEEEEecCccccccc-CHHHHHHH
Confidence 9999999988888888877777665443 278999999999999842 33444433
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.52 E-value=1.1e-13 Score=136.11 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=85.7
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhH-HHhhh-----cccc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEA-VAKLL-----SNKD 355 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-~~~~~-----~~~~ 355 (430)
...++|+++|.+|||||||+|+|++..+...+. +.++.......+..++ ..+.+|||+|... +..+. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999998764332 2222233334555553 4578999999732 11111 1124
Q ss_pred ccccccEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 356 SLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 356 ~~~~ad~vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
.+..+|++++|+|.++ ++..... |+..+... +.|+++|+||+|+.+. ...++.++++..+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~ 188 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENH 188 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcC
Confidence 5789999999999764 5655544 44444432 4677889999999753 2445566655543
No 168
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.52 E-value=7e-14 Score=115.10 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=103.0
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|-.|+|||||++.+.+.+..... ||.| |..+.+... +...+.+||..|+...+..| ..|+.+.|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyW--sNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYW--SNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCC--cceEEEeec-CcEEEEEEecCCccccchhh--hhhhhccce
Confidence 55689999999999999999999988765544 6666 555788888 68889999999999999999 799999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 363 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+|+|+|.+|...|+++..-+-++....+.. .+|+++.+||.|+..
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllt 133 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLT 133 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHh
Confidence 999999999999999988888877765543 799999999999876
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=1.1e-13 Score=142.28 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=81.3
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChhH--------HHhhhccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNK 354 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~--------~~~~~~~~ 354 (430)
...+|+|+|.+|||||||+|++++....... .++++.+.....+.+.+ ..+.+|||+|.+. +.... .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~--~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQA--E 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHH--H
Confidence 3469999999999999999999998754333 34444444444555553 3577899999652 22222 4
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 355 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+++.+|++++|+|+++..++.. ..+...+... ++|+++|+||+|+..
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~------~~piilV~NK~Dl~~ 160 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRRS------GKPVILAANKVDDER 160 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCc
Confidence 57889999999999998766542 2344444322 689999999999865
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=2.7e-13 Score=139.55 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=85.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhhc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLS 352 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~~ 352 (430)
..+||+++|.+|||||||+|+|++..... ...++++.+.....+.+++ ..+.+|||+|. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~- 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR- 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH-
Confidence 45899999999999999999999987542 3335555555555666663 34578999994 3343332
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
...+++.+|++++|+|+++..++..+. ++..+... +.|+|+|+||+|+.+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~------~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA------GRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCC
Confidence 234678999999999999988887764 44444432 689999999999976
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=3.1e-13 Score=135.60 Aligned_cols=138 Identities=19% Similarity=0.073 Sum_probs=95.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH----HHhhh-ccccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAAC 360 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~----~~~~~-~~~~~~~~a 360 (430)
..|+++|.||||||||++++++.+......|.++.......+.++ ....+.+||++|... ...+. .....+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 479999999999999999999887554444544444444445554 235678999998521 11111 002345679
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCcc
Q 014101 361 DIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 361 d~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~ 428 (430)
+++++|+|+++. ++++....|..++..+.... .+.|++||+||+|+.. ..+..+++++.++.++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~~i 304 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPE---AEENLEEFKEKLGPKV 304 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcC---CHHHHHHHHHHhCCcE
Confidence 999999999865 67888888888887764321 2689999999999854 2355667777766544
No 172
>COG1159 Era GTPase [General function prediction only]
Probab=99.49 E-value=2e-13 Score=127.47 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=87.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH-----HHhhh-cccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-----VAKLL-SNKDSLAA 359 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-----~~~~~-~~~~~~~~ 359 (430)
--|+++|.||||||||+|++++.+.+..+...++++..+..+... +...+.++||||-.. .+.+. .....+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 469999999999999999999999999987777777777777666 467788999999311 11111 22567899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccC
Q 014101 360 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM 412 (430)
Q Consensus 360 ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v 412 (430)
+|+++||.|+++ .+..-.+++.+..+.. +.|++++.||+|......
T Consensus 86 vDlilfvvd~~~--~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 86 VDLILFVVDADE--GWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred CcEEEEEEeccc--cCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH
Confidence 999999999985 3333334443333221 589999999999888544
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.49 E-value=1.3e-13 Score=121.09 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=80.3
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh-----hHHHhhhcccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-----e~~~~~~~~~~~~~~ad 361 (430)
+|+++|.+|||||||+|++.+.... ..++.+. .+.+. .+||++|. +.+..+. ..++.+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~---~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALI---TTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEE-------EECCC----CcccCCccccCCHHHHHHHH---HHHhcCC
Confidence 7999999999999999998865421 1122222 22211 15999996 3444333 3478999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC--ccc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM--VLY 429 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~--~~f 429 (430)
++++|+|+++..++ +..|+..+. .+.|+++++||+|+.+ ...+.+.++++++++ ++|
T Consensus 67 ~il~v~d~~~~~s~--~~~~~~~~~-------~~~~ii~v~nK~Dl~~--~~~~~~~~~~~~~~~~~p~~ 125 (158)
T PRK15467 67 MLIYVHGANDPESR--LPAGLLDIG-------VSKRQIAVISKTDMPD--ADVAATRKLLLETGFEEPIF 125 (158)
T ss_pred EEEEEEeCCCcccc--cCHHHHhcc-------CCCCeEEEEEccccCc--ccHHHHHHHHHHcCCCCCEE
Confidence 99999999988776 334544431 1579999999999965 345667788888875 554
No 174
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.48 E-value=1.7e-13 Score=121.67 Aligned_cols=120 Identities=23% Similarity=0.173 Sum_probs=79.6
Q ss_pred EeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHH----Hhhh-ccccccccccEEE
Q 014101 290 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----AKLL-SNKDSLAACDIAV 364 (430)
Q Consensus 290 vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~----~~~~-~~~~~~~~ad~vi 364 (430)
++|++|||||||++++.+........+..+.......+.++ ....+.+||++|.... +.+. .....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999987522222222222222334444 1356789999996321 1111 0023567899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhcCCC----CCCCCcEEEEEeCCCCCCc
Q 014101 365 FVHDSSDE------SSWKRATELLVEVASYGED----TGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 365 lv~D~t~~------~S~~~~~~~l~~l~~~~~~----~~~~~PiilVgnK~Dl~~~ 410 (430)
+|+|++++ .++.....|...+...... ...+.|+++|+||+|+...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 99999988 5788888888777654321 0016899999999999764
No 175
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.48 E-value=2e-13 Score=139.17 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=86.3
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh------hccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNK 354 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~------~~~~ 354 (430)
.+..++|+++|.+|||||||+|++++..... ...+..+.++....+.+++ ..+.+|||+|.+.+... ....
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 3456899999999999999999999987532 3335555555556666663 45789999997543321 1123
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 355 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.+++.+|++++|+|++++.+++....|.. . .+.|+++|+||+|+.+.
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~-----~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE----L-----KDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh----c-----CCCCcEEEEEhhhcccc
Confidence 57889999999999999888876544433 1 26899999999999753
No 176
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.47 E-value=1.7e-13 Score=112.36 Aligned_cols=143 Identities=17% Similarity=0.303 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCCcCHHhHHHHHHHHHH
Q 014101 51 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 130 (430)
Q Consensus 51 lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~gi~~~eFl~~~~~~~~ 130 (430)
.++++..+++++|.+||+.+||+|+......+++. +|..++..++........+. -.+-.-|+|++||-++.-...
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~---~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRR---EMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccc---hhhhhhhhHHHHHHHHHHHHh
Confidence 46777899999999999999999999999999765 68888888877666554211 001123999999988642111
Q ss_pred cCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCC
Q 014101 131 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 210 (430)
Q Consensus 131 ~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~ 210 (430)
. .+ ....+...+-.+.||++|+|.|...||+.++.+.+..
T Consensus 81 n----------------------------------k~------q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek 120 (152)
T KOG0030|consen 81 N----------------------------------KD------QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK 120 (152)
T ss_pred c----------------------------------cc------cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh
Confidence 0 00 1123456788999999999999999999999887654
Q ss_pred CCCC--CcccccccccCCcccchhhHHhhh
Q 014101 211 PWDE--APYKDAAEKTALGGLSLDGFLSEW 238 (430)
Q Consensus 211 ~~~~--~~~~~~~d~~~dg~i~~~ef~~~w 238 (430)
.-+. +.+. .--.|.+|.|+|+.|+...
T Consensus 121 l~eeEVe~Ll-ag~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 121 LTEEEVEELL-AGQEDSNGCINYEAFVKHI 149 (152)
T ss_pred ccHHHHHHHH-ccccccCCcCcHHHHHHHH
Confidence 3221 2222 3344788999999998763
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=5.9e-13 Score=135.28 Aligned_cols=144 Identities=19% Similarity=0.092 Sum_probs=92.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChh----HHHhhh-ccccccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----AVAKLL-SNKDSLA 358 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e----~~~~~~-~~~~~~~ 358 (430)
...+|+|||.||||||||+|++++.+......|.++.......+.+.+ ..+.+||++|.. ....+. ....++.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 346899999999999999999998876554445555555555666653 568899999941 111110 0124568
Q ss_pred cccEEEEEEECCCh----hhHHHHHHHHHHHHhcCCC--------CCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 359 ACDIAVFVHDSSDE----SSWKRATELLVEVASYGED--------TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 359 ~ad~vilv~D~t~~----~S~~~~~~~l~~l~~~~~~--------~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
+||++++|+|+++. +.+..+..|..++..+... ...+.|+|||+||+|+.+.....+.........++
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~ 315 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW 315 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence 89999999999853 4566666666666554320 01268999999999997643222333333334455
Q ss_pred ccc
Q 014101 427 VLY 429 (430)
Q Consensus 427 ~~f 429 (430)
++|
T Consensus 316 ~Vf 318 (500)
T PRK12296 316 PVF 318 (500)
T ss_pred eEE
Confidence 543
No 178
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=6.8e-13 Score=132.38 Aligned_cols=135 Identities=19% Similarity=0.134 Sum_probs=94.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH--------HHhhhcccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNKDSL 357 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~--------~~~~~~~~~~~ 357 (430)
..|++||.||||||||+|++++.+......|.++.......+... ....+.++|++|... -..+ ...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~---l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRF---LKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHH---HHHH
Confidence 479999999999999999999887654444555555555556555 344578899999532 1112 2467
Q ss_pred ccccEEEEEEECC---ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 358 AACDIAVFVHDSS---DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 358 ~~ad~vilv~D~t---~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
+.+|++++|+|++ +.++++....|+.++..+.... .+.|+++|+||+|+.......+..+++.+.++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 8999999999998 4567788888888877653211 15899999999999764433445555655543
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.46 E-value=9.7e-13 Score=114.97 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhh------ccccccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLA 358 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~------~~~~~~~ 358 (430)
..+|+++|.+|+|||||++++.+..................... ......+.+||++|........ .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY-TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE-EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998876544322222222222222 2234667899999954322110 0134578
Q ss_pred cccEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHh
Q 014101 359 ACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFL 424 (430)
Q Consensus 359 ~ad~vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~ 424 (430)
.+|++++|+|++++. ..... +...+... +.|+++|+||+|+... ....+....+....
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELG 141 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhcc
Confidence 899999999999862 22222 23333322 5799999999999843 23334444444443
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.45 E-value=7.9e-13 Score=127.87 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh------hcccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDSLAA 359 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~------~~~~~~~~~ 359 (430)
-.|+|+|.+|||||||+|++++.+....+..+.+.......+... +...+.++||+|....... ......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 469999999999999999999998765553333333333333333 3367889999995321110 011346788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhC
Q 014101 360 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV 425 (430)
Q Consensus 360 ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g 425 (430)
+|++++|+|+++. +.....++...... .+.|+++|+||+|+... ........++.+.++
T Consensus 85 ~D~il~vvd~~~~--~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 85 VDLVLFVVDADEK--IGPGDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMD 144 (292)
T ss_pred CCEEEEEEeCCCC--CChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC
Confidence 9999999999872 22222333222222 15899999999999843 333455566655444
No 181
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=2.1e-15 Score=129.81 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=122.7
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCC-eEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~-~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
...+|++|+|.-||||||++++++...|+..+..|+|.++..+.+.++.. ..+..+||.+|++++..+. .-|++.++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt--rVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT--RVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE--EEEecCCc
Confidence 45689999999999999999999999999999999999998887777643 3456699999999999988 88999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCCCccCc--HHHHHHHHHHhCCc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFAMA--IQDSTRVFTFLVMV 427 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~-~~~~~~PiilVgnK~Dl~~~~v~--~~~~~~~~~~~g~~ 427 (430)
+..+|||+++...|+....|..++..... ..+..+|+|+.+||||....... .....+|++++|+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 99999999999999999999998766422 33457889999999999886433 58889999999864
No 182
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.45 E-value=1.1e-12 Score=117.65 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=80.1
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCc--------------cceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT--------------DERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS 352 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~--------------~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~ 352 (430)
+|+|+|.+|+|||||++++++........++. +.+.......+..+...+.+||++|...+...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~- 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEV- 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHH-
Confidence 48999999999999999999887665432211 111111122222234678899999988877766
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..+++.+|++++|+|+++..+.. ...++..+... +.|+++|+||+|+..
T Consensus 80 -~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~------~~~i~iv~nK~D~~~ 128 (189)
T cd00881 80 -IRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREG------GLPIIVAINKIDRVG 128 (189)
T ss_pred -HHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHC------CCCeEEEEECCCCcc
Confidence 57788999999999998765443 23344444432 689999999999986
No 183
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.44 E-value=2.2e-12 Score=134.82 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=92.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
....+|+++|.+++|||||++++.+..+.....++++.+.....+.++++ ..+.+|||+|++.|..++ ...+..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r--~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMR--ARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHH--HhhhccCCE
Confidence 34468999999999999999999998887766555655555566666532 367899999999999887 567889999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 363 AVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 363 vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
+++|+|+++. ++.+.+ ...... ++|+++++||+|+.+. ..++..+.++.+|
T Consensus 162 aILVVda~dgv~~qT~e~i----~~~~~~------~vPiIVviNKiDl~~~--~~e~v~~~L~~~g 215 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI----SHAKAA------NVPIIVAINKIDKPEA--NPDRVKQELSEYG 215 (587)
T ss_pred EEEEEECCCCCCHhHHHHH----HHHHHc------CCCEEEEEECcccccC--CHHHHHHHHHHhh
Confidence 9999999863 333322 222221 6899999999999652 2334444444433
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=1.3e-12 Score=115.15 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=77.2
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH----------Hhhhcc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----------AKLLSN 353 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~----------~~~~~~ 353 (430)
.++|+++|.+|+|||||++++++....... .++.+.......+...+ ..+.+||++|.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~-~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVL-RT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHH-HH
Confidence 479999999999999999999987644322 23222223223344442 34679999995322 111 11
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
...+..+|++++|+|++++.+.... .++..+... +.|+++|+||+|+.+.
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~------~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILEE------GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc------CCCEEEEEeccccCCc
Confidence 2456789999999999988776543 233333322 5899999999999775
No 185
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.43 E-value=1.3e-12 Score=113.42 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=80.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh------hccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDSLA 358 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~------~~~~~~~~ 358 (430)
++|+++|++|+|||||++++.+..... ...++.+..+....+... ...+.+||++|...+... ......+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999887532 222444444433444444 356788999996433211 11135667
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 359 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 359 ~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.+|++++|+|++++.+......+.. . .+.|+++|+||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----~-----~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----P-----ADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----h-----cCCCEEEEEEchhcCCc
Confidence 9999999999998877776554433 1 26899999999999764
No 186
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.43 E-value=2.4e-12 Score=116.70 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=78.5
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhh
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKL 350 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~ 350 (430)
..+..++|+++|.+|||||||++++++..+.....++.+.+.......+. ..+.+||++|. +.+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34567899999999999999999999987554554666655544444432 46789999993 344433
Q ss_pred hccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 351 LSNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 351 ~~~~~~~~---~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
. ..+++ .++++++|+|.+++.+.... .+...+. .. ++|+++++||+|+...
T Consensus 97 ~--~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~~-----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 97 I--EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-EY-----GIPVLIVLTKADKLKK 150 (196)
T ss_pred H--HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-Hc-----CCcEEEEEECcccCCH
Confidence 3 23343 44788899998875443321 1122222 11 6899999999999763
No 187
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.42 E-value=1.1e-12 Score=118.76 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCC----CCCCC---cC--CCccceEEEEEEEc----------CCCeEEEEEEeCCChhH
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGR----PFSDN---YT--PTTDERYAVNVVDQ----------PGGTKKTVVLREIPEEA 346 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~----~~~~~---~~--~t~~~~~~~~~v~~----------~~~~~~~~i~d~~G~e~ 346 (430)
++|+++|.+|||||||+++|++. .+... .. .|....+....+.. .+....+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999973 11111 11 22233332222221 12246778999999866
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+.... ......+|++++|+|+++.........+. +.... +.|+++|+||+|+..
T Consensus 81 ~~~~~--~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~-----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTI--IGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL-----CKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHH--HHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc-----CCCEEEEEECcccCC
Confidence 53322 24456789999999998744333332222 11111 479999999999975
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.42 E-value=2.6e-12 Score=134.91 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC-------CCCCcCC------CccceEEEEEEEc-----CCCeEEEEEEeCCChhHH
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTP------TTDERYAVNVVDQ-----PGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~-------~~~~~~~------t~~~~~~~~~v~~-----~~~~~~~~i~d~~G~e~~ 347 (430)
-+|+++|..++|||||+++|+... +...+.. ..|.++....+.+ ++....+.+|||+|+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998642 2222211 2244444443332 345577889999999999
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
.... ..+++.+|++++|+|+++..+.+....|...+. . ++|+++|+||+|+.+.. ......++++.+++.
T Consensus 84 ~~~v--~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYEV--SRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGLD 153 (595)
T ss_pred HHHH--HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCCC
Confidence 8877 678999999999999998777776666655442 1 58999999999997532 233445666666653
No 189
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.41 E-value=5e-12 Score=120.84 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCc----------CCCccceEEEEEEEcCCCeEEEEEEeCCChhH--------
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------- 346 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~----------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-------- 346 (430)
.++|+|+|.+|+|||||+|++++..+.... .+|.+.......+..+|....+.+|||+|-..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 479999999999999999999999875542 23333444444455555567788999999211
Q ss_pred ----------HHhhhcc-----c-cccc--cccEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 014101 347 ----------VAKLLSN-----K-DSLA--ACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDL 407 (430)
Q Consensus 347 ----------~~~~~~~-----~-~~~~--~ad~vilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl 407 (430)
+...... + ..+. .+|+++++++.+.. .+... ...++.+.. .+|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~-------~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK-------RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc-------cCCEEEEEECCCc
Confidence 1111100 1 2233 46788888887642 22221 334444432 4899999999999
Q ss_pred CCc---cCcHHHHHHHHHHhCCcccC
Q 014101 408 DSF---AMAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 408 ~~~---~v~~~~~~~~~~~~g~~~fk 430 (430)
... ......+.+.++.+++++|+
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEC
Confidence 663 23467788888899988774
No 190
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-12 Score=116.16 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=101.4
Q ss_pred CCccHHHHHHHHHHHHhhcCC-CCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCCcCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHD-RDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d-~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~gi~~~eFl~~~~~ 127 (430)
.+++..++..|-+.|..+|++ ++|.|+.+|+..+.. ..-.|+. ..|+..++.. .++.+|+|++|+.+...
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np~~----~rI~~~f~~~----~~~~~v~F~~Fv~~ls~ 95 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNPLA----DRIIDRFDTD----GNGDPVDFEEFVRLLSV 95 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCcHH----HHHHHHHhcc----CCCCccCHHHHHHHHhh
Confidence 568899999999999999999 999999999998863 2233333 3556665321 22333999999998653
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccC
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 207 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~ 207 (430)
|. | . ....+.++=||++||.|++|+|+.+||..++...
T Consensus 96 f~----------------------------~------~--------~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 96 FS----------------------------P------K--------ASKREKLRFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred hc----------------------------C------C--------ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 22 1 0 0111347779999999999999999999998763
Q ss_pred CCCCCC--CC-------cccccccccCCcccchhhHHhhhh
Q 014101 208 PECPWD--EA-------PYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 208 ~~~~~~--~~-------~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
-+.-+. .+ ..+.++|.|+||.|||+||.....
T Consensus 134 ~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 134 VGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 222222 11 234799999999999999998743
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.40 E-value=2.9e-12 Score=137.76 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=93.5
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc--------cccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS--------NKDS 356 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~--------~~~~ 356 (430)
.++|+++|.+|||||||+|++++........|..+.+.....+.. +...+.++|++|...+..... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 368999999999999999999988764433344444443334443 456788999999866543210 0122
Q ss_pred --cccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 357 --LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 357 --~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
...+|++++|+|+++.++- ..+..++.+. ++|+++|+||+|+.+++....+.+++++.+|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEE
Confidence 2479999999999875442 2344455443 68999999999997655445678889999998764
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=2.7e-12 Score=131.14 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=79.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCC-cCCCccceEEEEEEEcCCCeEEEEEEeCCChhH--------HHhhhccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDN-YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNKDS 356 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~-~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~--------~~~~~~~~~~ 356 (430)
.+|+++|.+|||||||+|++.+...... ..+..+.+.....+.+.+ ..+.+|||+|.+. +.... ..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~--~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQA--ELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHH--HHH
Confidence 5899999999999999999998875422 234444555555666664 6788999999865 12222 456
Q ss_pred cccccEEEEEEECCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 357 LAACDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 357 ~~~ad~vilv~D~t~~~S~--~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+..+|++++|+|+++..+. ..+..|+... +.|+++|+||+|+.+
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~---------~~piilv~NK~D~~~ 123 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS---------NKPVILVVNKVDGPD 123 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc---------CCcEEEEEECccCcc
Confidence 7899999999999875333 2344444321 589999999999765
No 193
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1.9e-12 Score=112.41 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred EEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh-----hh-cccccccccc
Q 014101 289 FVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-----LL-SNKDSLAACD 361 (430)
Q Consensus 289 ~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~-----~~-~~~~~~~~ad 361 (430)
+++|.+|||||||++++.+..... ...+..+.+.....+... ...+.+|||+|...+.. +. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875322 112333333443445544 25678999999766433 11 0134578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
++++|+|+.+..+.... .+...+... +.|+++|+||+|+.+.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~------~~piiiv~nK~D~~~~ 120 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS------KKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc------CCCEEEEEECcccCCh
Confidence 99999999875444332 122223222 5899999999999874
No 194
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.39 E-value=4.6e-12 Score=132.95 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=90.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC---CCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~---~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+.|+++|.+++|||||+++|++.. +.....++++.+.....+.+++ ..+.+||++|++.|.... ...+.++|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~--~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNA--IAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHH--HhhhccCCE
Confidence 368999999999999999999743 3333445555566555666663 678899999999888765 567889999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCcc---CcHHHHHHHHHHh
Q 014101 363 AVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFA---MAIQDSTRVFTFL 424 (430)
Q Consensus 363 vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~---v~~~~~~~~~~~~ 424 (430)
+++|+|+++ +++++.+. .+... ++| +++|+||+|+.+.. ...+++.++++..
T Consensus 77 aILVVDa~~G~~~qT~ehl~----il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLA----VLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY 135 (581)
T ss_pred EEEEEECCCCCcHHHHHHHH----HHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999987 44554432 22222 567 99999999998743 1245566666655
No 195
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=2.5e-12 Score=128.75 Aligned_cols=124 Identities=21% Similarity=0.263 Sum_probs=92.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
+..+||+++|+.||||||||..++..++.+.. |..-..+.+..--.+ ......++|+...+.-+... ...++.||+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvtP-e~vpt~ivD~ss~~~~~~~l--~~EirkA~v 82 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVTP-ENVPTSIVDTSSDSDDRLCL--RKEIRKADV 82 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccCc-CcCceEEEecccccchhHHH--HHHHhhcCE
Confidence 45689999999999999999999999998776 333232322211122 34457788987655544444 577899999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 363 AVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 363 vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
|+++|+++++++.+.+.. |+..+++..+. ..++|+||||||+|.....
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCcccc
Confidence 999999999999999866 77777765533 2489999999999997753
No 196
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-12 Score=115.01 Aligned_cols=129 Identities=17% Similarity=0.227 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCc
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRL 134 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~ 134 (430)
...+...|...|+|+.|.|+.+||..++......+.+.+-+..|+..+ |.+..| |.|.||.+||+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mf------d~~~~G~i~f~EF~~Lw~~------- 122 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMF------DRDNSGTIGFKEFKALWKY------- 122 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHh------cCCCCCccCHHHHHHHHHH-------
Confidence 448999999999999999999999999877778889999999999999 667778 999999999752
Q ss_pred hhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCC--CCC
Q 014101 135 ETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE--CPW 212 (430)
Q Consensus 135 ~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~--~~~ 212 (430)
++..+++|+.||+|++|.|+..||+.+|...+- .|.
T Consensus 123 ------------------------------------------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 123 ------------------------------------------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred ------------------------------------------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 233678999999999999999999999987643 221
Q ss_pred CCCcccccccccCCcccchhhHHhhhh
Q 014101 213 DEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 213 ~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
-.+-+.+..|.-+.|.|.|++|+++..
T Consensus 161 ~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 161 FYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHHhccccCCceeHHHHHHHHH
Confidence 112344677766689999999998743
No 197
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.37 E-value=9.1e-13 Score=116.66 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=77.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEc-CCCeEEEEEEeCCChhHHHhhh-ccccccccccEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQ-PGGTKKTVVLREIPEEAVAKLL-SNKDSLAACDIAV 364 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~d~~G~e~~~~~~-~~~~~~~~ad~vi 364 (430)
.|+++|++|+|||+|..+|..+....+..+. .... ...+ ......+.++|.||+.+.+... ....+...+.+||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 6899999999999999999998665554222 2222 1222 2234457789999998877633 1112478899999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 365 FVHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 365 lv~D~t~-~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
||+|++. +.....+.+++..+..........+|+++++||+|+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999974 566777888777766654433347999999999999774
No 198
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=5.5e-12 Score=128.61 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=79.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh---------hhcc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK---------LLSN 353 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~---------~~~~ 353 (430)
..++|+++|.+|||||||++++++......+ .+.++.+.....+...+ ..+.+|||+|...... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999988754322 23333333333444443 3678999999533211 1112
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
..+++.+|++++|+|+++..+..... ++..+... +.|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~------~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA------GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc------CCcEEEEEECcccC
Confidence 35678999999999999877766543 33444332 58999999999998
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.36 E-value=3.3e-12 Score=134.15 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc----cccc--cccccEEEE
Q 014101 292 GPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS----NKDS--LAACDIAVF 365 (430)
Q Consensus 292 G~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~----~~~~--~~~ad~vil 365 (430)
|++|||||||+|++++........|+.+.+.....+..++ ..+.+||++|...+..... ...+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999887555556666666656666663 3468999999876554310 0222 247899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
|+|+++.+. ...+..++.+. ++|+++|+||+|+.+++....+.+++++.+|++++
T Consensus 79 VvDat~ler---~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVV 133 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEE
Confidence 999987432 22333344332 68999999999997655444567899999998865
No 200
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.36 E-value=1.5e-11 Score=116.99 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=83.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc----------CC----------CccceEEEEEEEcCCCeEEEEEEeCCChhH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY----------TP----------TTDERYAVNVVDQPGGTKKTVVLREIPEEA 346 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~----------~~----------t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~ 346 (430)
+|+++|.+|+|||||+++++...-.... .. ..+.++......+..+...+.+|||+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 7999999999999999999743111000 00 012222333333343457888999999988
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
|.... ...++.+|++++|+|+++... .....++...... ++|+++++||+|+..... .....++.+.++.
T Consensus 84 f~~~~--~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDT--YRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRLR------GIPIITFINKLDREGRDP-LELLDEIEEELGI 153 (267)
T ss_pred HHHHH--HHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHhc------CCCEEEEEECCccCCCCH-HHHHHHHHHHHCC
Confidence 77654 567889999999999987432 2223444433322 689999999999876432 2224455555554
Q ss_pred c
Q 014101 427 V 427 (430)
Q Consensus 427 ~ 427 (430)
+
T Consensus 154 ~ 154 (267)
T cd04169 154 D 154 (267)
T ss_pred C
Confidence 3
No 201
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=5.2e-12 Score=128.80 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=78.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCCh--------hHHHhhhcccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPE--------EAVAKLLSNKDSL 357 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~--------e~~~~~~~~~~~~ 357 (430)
+|+++|.+|||||||+|++++....... .+..+.+.....+.+.+ ..+.+|||+|. +.+.... ..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~--~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQA--EIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHH--HHHH
Confidence 5899999999999999999998754332 24444444445556653 45889999995 3333333 5678
Q ss_pred ccccEEEEEEECCChhhHH--HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 358 AACDIAVFVHDSSDESSWK--RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 358 ~~ad~vilv~D~t~~~S~~--~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
+.+|++++|+|+++.-+.. .+..|+.. . +.|+++|+||+|+....
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~---~------~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRK---S------GKPVILVANKIDGKKED 123 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHH---h------CCCEEEEEECccCCccc
Confidence 9999999999998743332 23344332 2 58999999999987643
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.35 E-value=7.6e-12 Score=117.03 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=85.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCC--------c--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDN--------Y--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 350 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~--------~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~ 350 (430)
+|+++|.+|+|||||+++++...-... . ....+.+.......+..+...+.+|||+|+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 479999999999999999975321100 0 001122222222333334567889999999888776
Q ss_pred hccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 351 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 351 ~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
. ..+++.+|++++|+|+++.-+. ....++..+... ++|+++++||+|+..... .+...++.+.++.
T Consensus 81 ~--~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~a~~-~~~~~~i~~~~~~ 146 (237)
T cd04168 81 V--ERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAGADL-EKVYQEIKEKLSS 146 (237)
T ss_pred H--HHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccCCCH-HHHHHHHHHHHCC
Confidence 6 6788999999999999875443 344555555443 589999999999986321 3344444444443
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.35 E-value=1e-11 Score=133.79 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=83.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhhc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLS 352 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~~ 352 (430)
..+||+++|.+|||||||+|++++.+... ...++++.+.....+.+++. .+.+|||+|. +.+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~-r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSL-R 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHH-H
Confidence 45799999999999999999999987532 22344445554455666643 3568999994 223222 1
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
....++.+|++++|+|+++..++.... ++..+... +.|+++|+||+|+.+
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~ 575 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCC
Confidence 235678999999999999987777664 34444332 689999999999976
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.35 E-value=2.9e-12 Score=126.44 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=88.7
Q ss_pred hhhhccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh-----
Q 014101 277 KKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL----- 350 (430)
Q Consensus 277 ~~~~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~----- 350 (430)
+.+...+..+|++++|.||||||||+|.+++.+.+..+ .|.++.+.-...+.++| ..+.++||+|-..-...
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iG 286 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIG 286 (454)
T ss_pred hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHH
Confidence 34555678899999999999999999999999987765 35555566556667774 77788999995322211
Q ss_pred -hccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 351 -LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 351 -~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.++...+++||.|++|+|.+.+.+-... ..+. . .. .+.|+++|.||.|+...
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~-~--~~----~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE-L--LP----KKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH-h--cc----cCCCEEEEEechhcccc
Confidence 1345778999999999999985221111 1111 1 11 26899999999999874
No 205
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=2.6e-11 Score=105.24 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=91.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-----CCC-----ccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----TPT-----TDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSN 353 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----~~t-----~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~ 353 (430)
...||+|+|+.++||||+++++.......+. ... +++-.......+. +.....+++|+||++|.-+|
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~-- 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW-- 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH--
Confidence 4579999999999999999999988752221 111 1111111233344 33556689999999999999
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHH
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 422 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~ 422 (430)
.-+.+.+.++++++|.+.+..+ .....+.-+.... .+|+++.+||.||.+.. +.++.+++.+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~-ppe~i~e~l~ 147 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDAL-PPEKIREALK 147 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCC-CHHHHHHHHH
Confidence 7888999999999999999888 4455555544432 38999999999999843 3444444443
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.34 E-value=5.6e-12 Score=131.61 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=77.4
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC----------------CeEEEEEEeCCChhHHHhh
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG----------------GTKKTVVLREIPEEAVAKL 350 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~----------------~~~~~~i~d~~G~e~~~~~ 350 (430)
-|+++|.+++|||||+++|.+..+......+++.+.....+..+. ....+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 699999999999999999999877544322121111111111110 0113779999999999988
Q ss_pred hccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 351 LSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 351 ~~~~~~~~~ad~vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
. ..+++.+|++++|+|+++ +++++.+..+ ... ++|+++|+||+|+..
T Consensus 86 ~--~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~~------~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 86 R--KRGGALADLAILIVDINEGFKPQTQEALNIL----RMY------KTPFVVAANKIDRIP 135 (590)
T ss_pred H--HHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HHc------CCCEEEEEECCCccc
Confidence 7 567899999999999987 5555554322 221 689999999999964
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=1.4e-11 Score=125.93 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=79.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChh----------HHHhhhc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEE----------AVAKLLS 352 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e----------~~~~~~~ 352 (430)
..++|+++|.+|||||||++++++....... .+.++.+.....+... ...+.+|||+|.. .+.. ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~-~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSV-IR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHH-HH
Confidence 4689999999999999999999987643332 2333333322333334 3556789999942 2221 11
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
....++.+|++++|+|+++..+..... ++..+... +.|+++|+||+|+.+.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~------~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA------GRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc------CCcEEEEEECccCCCH
Confidence 234678999999999999876665543 33333332 5899999999999853
No 208
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.8e-11 Score=114.20 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=93.3
Q ss_pred hhccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh-----hHHHhh-hc
Q 014101 279 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKL-LS 352 (430)
Q Consensus 279 ~~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-----e~~~~~-~~ 352 (430)
.........|+|.|.||||||||++.+++.+....+.|.++....+.+++.+ ...++++||+|- +.-+.+ .+
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHH
Confidence 4445577899999999999999999999999998888988888888888766 467889999993 111111 11
Q ss_pred cccccc-cccEEEEEEECCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 353 NKDSLA-ACDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 353 ~~~~~~-~ad~vilv~D~t~~--~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+...++ -.++|+|+||.+.. -+.+.-..++.++...- +.|+++|.||+|+.+.
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccch
Confidence 112222 25889999999864 35566666777777654 5799999999998863
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.7e-11 Score=107.47 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=87.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCC-CCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 351 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~-~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~ 351 (430)
.....|+++|++|||||||||++++.+- +.++ .|.|.+..+..+.+.+. +.++|.+|- +....+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 4557899999999999999999999764 4444 78888888888888743 667899882 3333333
Q ss_pred ccccccc---cccEEEEEEECCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 352 SNKDSLA---ACDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 352 ~~~~~~~---~ad~vilv~D~t~~~S~--~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
..|++ +..++++++|+..+-.- .++-+|+.. . ++|+++|+||+|..............++.++.
T Consensus 98 --~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~---~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 98 --EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE---L------GIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred --HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH---c------CCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 33443 35788999998754322 123333333 2 79999999999998854444445555555543
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.32 E-value=8.1e-12 Score=123.05 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=81.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhH-----HHhhh--cccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEA-----VAKLL--SNKDSL 357 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-----~~~~~--~~~~~~ 357 (430)
..|+++|.||||||||+||+++.+.+..+. |.++.+.......+.+ ..+.++||+|-+. +.... ++...+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 479999999999999999999999877653 5666666666777774 3378899988542 22221 335677
Q ss_pred ccccEEEEEEECCCh-hh-HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 358 AACDIAVFVHDSSDE-SS-WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 358 ~~ad~vilv~D~t~~-~S-~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..||++|||+|...- .. -+.+..|+. .. +.|++||+||+|-..
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr----~~-----~kpviLvvNK~D~~~ 126 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR----RS-----KKPVILVVNKIDNLK 126 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH----hc-----CCCEEEEEEcccCch
Confidence 899999999998752 22 223444433 21 689999999999764
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.32 E-value=7.8e-12 Score=115.24 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc-----------------CCCccceEEEEE--EEc---CCCeEEEEEEeCCCh
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------------TPTTDERYAVNV--VDQ---PGGTKKTVVLREIPE 344 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----------------~~t~~~~~~~~~--v~~---~~~~~~~~i~d~~G~ 344 (430)
+|+++|..++|||||+++++........ ....+.++.... +.+ .+....+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865433220 001112221111 111 334577889999999
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
..+.... ..++..+|++++|+|+++..++.. ..++...... ++|+++|+||+|+.
T Consensus 82 ~~f~~~~--~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~------~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEV--AAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE------GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHH--HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECcccC
Confidence 8887665 577899999999999987666543 3444444332 58999999999986
No 212
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.31 E-value=3.8e-11 Score=112.12 Aligned_cols=85 Identities=18% Similarity=0.082 Sum_probs=58.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH----hhh-cccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA----KLL-SNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~----~~~-~~~~~~~~ad 361 (430)
+|+++|.+|||||||++++.+........+..+.+.....+.+.+ ..+.+||++|..... ... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998864433334333334444555553 567889999963221 110 1135789999
Q ss_pred EEEEEEECCChh
Q 014101 362 IAVFVHDSSDES 373 (430)
Q Consensus 362 ~vilv~D~t~~~ 373 (430)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 213
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.30 E-value=2.5e-11 Score=128.95 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=84.2
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEE--EEcCCCeEEEEEEeCCChhHHHhhhccccccccc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV--VDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 360 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~--v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~a 360 (430)
+....|+|+|..++|||||++++.+..+.....++++.+..... +...+....+.+|||+|++.|..++ ...+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr--~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR--SRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH--HHHHHHC
Confidence 44568999999999999999999988776544333333222222 3333345778899999999999887 6788999
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 361 DIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 361 d~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
|++++|+|+++. .+++.+. .+.. .++|+|+|+||+|+..
T Consensus 320 DiaILVVDA~dGv~~QT~E~I~----~~k~------~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEAIN----YIQA------ANVPIIVAINKIDKAN 361 (742)
T ss_pred CEEEEEEECcCCCChhhHHHHH----HHHh------cCceEEEEEECCCccc
Confidence 999999999873 3443332 2222 1689999999999976
No 214
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=2e-11 Score=131.56 Aligned_cols=115 Identities=20% Similarity=0.181 Sum_probs=77.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChhH--------HHhhhcc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSN 353 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~--------~~~~~~~ 353 (430)
....+|+++|.+|||||||+|++++....... .|+.+.+.......+. ...+.+|||+|.+. +....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~-- 348 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQA-- 348 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHH--
Confidence 34568999999999999999999988754333 2333333333334444 24577899999642 22222
Q ss_pred ccccccccEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..+++.+|++++|+|+++. +.... .|...+... +.|+++|+||+|+..
T Consensus 349 ~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRRA------GKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEECccccc
Confidence 4567899999999999863 22222 344444432 689999999999865
No 215
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.28 E-value=2.5e-11 Score=130.00 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=85.0
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 362 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~ 362 (430)
.....|+|+|..++|||||+++|.+..+.....+.++.+.....+.+++ ..+.+|||+|++.|..++ ...++.+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~--~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMR--ARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHH--HhhhhhCCE
Confidence 3456899999999999999999998877655544444444445566653 567899999999999887 567888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 363 AVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 363 vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+|+|||+++ +++.+.+ ...... ++|+|+|+||+|+..
T Consensus 364 aILVVdAddGv~~qT~e~i----~~a~~~------~vPiIVviNKiDl~~ 403 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAI----NHAKAA------GVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEECCCCCCHhHHHHH----HHHHhc------CCcEEEEEECccccc
Confidence 999999987 3343332 222221 689999999999975
No 216
>COG2262 HflX GTPases [General function prediction only]
Probab=99.28 E-value=5.9e-11 Score=115.30 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=91.1
Q ss_pred hccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC------hhHHHhhhcc
Q 014101 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP------EEAVAKLLSN 353 (430)
Q Consensus 280 ~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G------~e~~~~~~~~ 353 (430)
+.......|.++|.+|+|||||+|++++...........+.+...+.+.+++ ...+++-||+| +....++..+
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH
Confidence 3445678999999999999999999998776655555555566667788884 45566778877 2222222223
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
......+|+++.|+|+++|...+++..-..-+...... .+|+|+|.||+|+...
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLED 319 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCc
Confidence 46678999999999999997666665554444443322 6899999999998764
No 217
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.28 E-value=2.6e-11 Score=104.62 Aligned_cols=113 Identities=26% Similarity=0.269 Sum_probs=76.4
Q ss_pred EeCCCCCCHHHHHHHHhCCCCC-CCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhh-----ccccccccccEE
Q 014101 290 VFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL-----SNKDSLAACDIA 363 (430)
Q Consensus 290 vvG~~~vGKSSLi~~l~~~~~~-~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~-----~~~~~~~~ad~v 363 (430)
++|.+|+|||||++++++.... ....++............. ....+.+||++|........ .....++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 2222332223333333333 24578899999965433211 113467899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
++|+|+++..+..... +....... +.|+++|+||+|+...
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCCh
Confidence 9999999887766654 44444332 6899999999999874
No 218
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=6.4e-11 Score=103.69 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=74.3
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhhccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLSNKDS 356 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~~~~~~ 356 (430)
+|+++|.+|+|||||++.+.+..+.....++.+.+.....+...+ .+.+||++|. +.+.... ..+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~--~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLI--EEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHH--HHH
Confidence 479999999999999999997666555556666555555555552 6778999983 2233332 222
Q ss_pred c---ccccEEEEEEECCChhh--HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 357 L---AACDIAVFVHDSSDESS--WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 357 ~---~~ad~vilv~D~t~~~S--~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+ ..++++++++|.++..+ ...+..|+... +.|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~---------~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL---------GIPFLVVLTKADKLKK 125 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc---------CCCEEEEEEchhcCCh
Confidence 3 35688999999986532 22344444332 4799999999999653
No 219
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.27 E-value=3.5e-11 Score=110.53 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=79.8
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc-------------------------------CCCccceEEEEEEEcCCCeEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQPGGTKK 335 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~~~~~~ 335 (430)
+|+++|.+|+|||||+++++...-.... ....+.+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 5899999999999999999754322110 0111222222333333 346
Q ss_pred EEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc----
Q 014101 336 TVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---- 411 (430)
Q Consensus 336 ~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~---- 411 (430)
+.+|||+|++.|.... ...++.+|++++|+|+++... ......+..+.... ..|+|+|+||+|+....
T Consensus 79 ~~liDTpG~~~~~~~~--~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~~-----~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 79 FIIADTPGHEQYTRNM--VTGASTADLAILLVDARKGVL-EQTRRHSYILSLLG-----IRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred EEEEECCcHHHHHHHH--HHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHcC-----CCcEEEEEEchhcccCCHHHH
Confidence 6789999998876544 456789999999999986421 11222222222221 24578899999997521
Q ss_pred -CcHHHHHHHHHHhCC
Q 014101 412 -MAIQDSTRVFTFLVM 426 (430)
Q Consensus 412 -v~~~~~~~~~~~~g~ 426 (430)
....+.+++.+.++.
T Consensus 151 ~~i~~~~~~~~~~~~~ 166 (208)
T cd04166 151 EEIVADYLAFAAKLGI 166 (208)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 113455666677764
No 220
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.26 E-value=1e-10 Score=96.87 Aligned_cols=105 Identities=20% Similarity=0.372 Sum_probs=68.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCChh----------HHHhhhcccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEE----------AVAKLLSNKD 355 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e----------~~~~~~~~~~ 355 (430)
+|+|+|.+|||||||+|++++......+ .+..+.......+.++ ...+.++||+|-. .+... ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~---~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKF---LE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHH---HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHH---HH
Confidence 6899999999999999999986543322 2333333333445555 3445699999931 11222 24
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeC
Q 014101 356 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 404 (430)
Q Consensus 356 ~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK 404 (430)
.+..+|++++|+|.+++.. +.....+..+. . +.|+++|.||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--~-----~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK--N-----KKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH--T-----TSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh--c-----CCCEEEEEcC
Confidence 4488999999999877321 22333334442 1 6899999998
No 221
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-11 Score=114.21 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=89.5
Q ss_pred hccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh------hHHHhhh--
Q 014101 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------EAVAKLL-- 351 (430)
Q Consensus 280 ~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~------e~~~~~~-- 351 (430)
......+.|+|||.||||||||.|.+++.+..+.+....+++..+..+... +...+.++||+|- .+.....
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 334567899999999999999999999999999888777777766666666 5677889999993 1111111
Q ss_pred --ccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 352 --SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 352 --~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.....+..||+|++|+|+++....-. ...+..+..+. ++|-++|.||.|...+
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-----cCCceeeccchhcchh
Confidence 11355678999999999996332211 12333444443 7899999999998764
No 222
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.1e-11 Score=105.98 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=94.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCC---CCC----cCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPF---SDN----YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDS 356 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~---~~~----~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~ 356 (430)
.-+.|+++|..++|||||+.+...... ... -.||.| ..+.++++. ...+.+||-.|++..+++| ..|
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~--~~~l~fwdlgGQe~lrSlw--~~y 89 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVC--NAPLSFWDLGGQESLRSLW--KKY 89 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeec--cceeEEEEcCChHHHHHHH--HHH
Confidence 447899999999999999987753321 111 124444 344556666 4677899999999999999 899
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 357 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 357 ~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|..|+++|+++|+++++.|+.....++.+..+... .++|+++.+||.|+.+.
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhh
Confidence 99999999999999999999988888887766544 37999999999999883
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.24 E-value=5.6e-11 Score=100.80 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=80.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh-----hHHHhhhcccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-----e~~~~~~~~~~~~~~ad 361 (430)
||++||++|||||||++++.+.+. .+..|+...+... ++||+|. ..++.+. ....+||
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~------------~IDTPGEyiE~~~~y~aLi---~ta~dad 65 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDN------------TIDTPGEYIENPRFYHALI---VTAQDAD 65 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEeccc------------EEECChhheeCHHHHHHHH---HHHhhCC
Confidence 899999999999999999999765 3445655544333 3566664 2344443 4557899
Q ss_pred EEEEEEECCChhh-HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 362 IAVFVHDSSDESS-WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 362 ~vilv~D~t~~~S-~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
+|++|.|++++.+ |..- +... -+.|+|-|+||+|+..+....+.++++.+..|+.
T Consensus 66 ~V~ll~dat~~~~~~pP~------fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPPG------FASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK 121 (143)
T ss_pred EEEEEecCCCCCccCCch------hhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC
Confidence 9999999998654 2210 0111 1579999999999996556678888999888874
No 224
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.24 E-value=9.2e-11 Score=112.01 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=83.1
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcC------------------CCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYT------------------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~------------------~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
+|+++|.+|+|||||+++++......... ...+.......+.+. ...+.+|||+|...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 48999999999999999997532111100 011112222334443 3567889999998776
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
... ...++.+|++++|+|+++....... ..+..+... ++|+++|+||+|+.... ......++.+.++.+
T Consensus 79 ~~~--~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~~------~~p~iivvNK~D~~~~~-~~~~~~~l~~~~~~~ 147 (268)
T cd04170 79 GET--RAALRAADAALVVVSAQSGVEVGTE-KLWEFADEA------GIPRIIFINKMDRERAD-FDKTLAALQEAFGRP 147 (268)
T ss_pred HHH--HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECCccCCCC-HHHHHHHHHHHhCCC
Confidence 555 5778999999999999876544332 223333322 68999999999998742 234445555556653
No 225
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.22 E-value=1.2e-10 Score=106.50 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=70.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCc-----CCCccceEEEEEEE-----------------------cC--C----
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----TPTTDERYAVNVVD-----------------------QP--G---- 331 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----~~t~~~~~~~~~v~-----------------------~~--~---- 331 (430)
++|+++|..|+|||||+..+.+....... ..+....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999999754211100 01111111100000 00 0
Q ss_pred CeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 014101 332 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDL 407 (430)
Q Consensus 332 ~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~----~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl 407 (430)
....+.+||++|++.+.... ...+..+|++++|+|++++ .++..+. .+.... ..|+++|+||+|+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~----~~~~~~-----~~~iiivvNK~Dl 149 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLA----ALEIMG-----LKHIIIVQNKIDL 149 (203)
T ss_pred cccEEEEEECCChHHHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHH----HHHHcC-----CCcEEEEEEchhc
Confidence 01567899999998877655 5667889999999999873 2333332 222221 2479999999999
Q ss_pred CCc
Q 014101 408 DSF 410 (430)
Q Consensus 408 ~~~ 410 (430)
...
T Consensus 150 ~~~ 152 (203)
T cd01888 150 VKE 152 (203)
T ss_pred cCH
Confidence 763
No 226
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.22 E-value=1.4e-10 Score=96.72 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=79.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
+||+++|..|||||+|+.++....+...+. ++.+ +..+. ..+.+.+++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~--~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYD--PTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhcc--ccccCCCCEEE
Confidence 489999999999999999998887754443 3332 22222 45678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc-cCcHHHHHHHHHHhC
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV 425 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~-~v~~~~~~~~~~~~g 425 (430)
+||+.++++|++.+ |...+....+ .++|.++++||.|+.+. ++..+.+..+++..+
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~~k---~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~ 108 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVGNK---SDLPILVGGNRDVLEEERQVATEEGLEFAETSA 108 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhcCC---CCCcEEEEeechhhHhhCcCCHHHHHHHHHHhC
Confidence 99999999999876 7776665443 26899999999998543 455666777877654
No 227
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.21 E-value=1.4e-10 Score=117.95 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=87.8
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCC--CCCC-----------------------------CcCCCccceEEEEEEEcC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGR--PFSD-----------------------------NYTPTTDERYAVNVVDQP 330 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~v~~~ 330 (430)
.++.++|+++|..++|||||+.+++.. .... ......+.+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 356789999999999999999999852 1110 00112233333333433
Q ss_pred CCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHH--HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 331 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKR--ATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 331 ~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~--~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
+...+.+||++|++.|.... ...++.+|++++|+|+++.+++.. ...++....... ..|+++|+||+|+.
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNM--ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSV 154 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHH--HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhcc
Confidence 35678899999998876544 456789999999999998754321 111222222111 35799999999997
Q ss_pred Cc-c----CcHHHHHHHHHHhCC
Q 014101 409 SF-A----MAIQDSTRVFTFLVM 426 (430)
Q Consensus 409 ~~-~----v~~~~~~~~~~~~g~ 426 (430)
+. + ...+++.++++..++
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~ 177 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGY 177 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCC
Confidence 42 1 224677778877764
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.21 E-value=8.6e-11 Score=108.56 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=75.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc----------------CCCccceEEEEEEEcC--------CCeEEEEEEeCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY----------------TPTTDERYAVNVVDQP--------GGTKKTVVLREI 342 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~----------------~~t~~~~~~~~~v~~~--------~~~~~~~i~d~~ 342 (430)
+|+++|..++|||||+.+|+...-.... ...++.......+.+. +....+.+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999754211100 0001111111112222 235677899999
Q ss_pred ChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 343 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 343 G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
|++.|.... ...++.+|++++|+|+++..+.+. ...+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~--~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEV--TAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHH--HHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence 999888766 678899999999999998655543 2333333322 57999999999986
No 229
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.20 E-value=8.6e-11 Score=119.60 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=85.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-------------------------------CCCccceEEEEEEEcC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQP 330 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~v~~~ 330 (430)
.++.++|+++|.+++|||||+++++...-.... .+.++.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 356789999999999999999999843221100 122222333233333
Q ss_pred CCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 331 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 331 ~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~-~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+...+.+|||+|++.|.... ...++.+|++++|+|++++.++.. ...++..+.... ..|+++|+||+|+.+
T Consensus 82 -~~~~i~liDtpG~~~~~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVN 153 (425)
T ss_pred -CCeEEEEEECCCcccchhhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEcccccc
Confidence 35678899999998776533 345688999999999987323222 222222222221 246999999999975
Q ss_pred cc-----CcHHHHHHHHHHhCC
Q 014101 410 FA-----MAIQDSTRVFTFLVM 426 (430)
Q Consensus 410 ~~-----v~~~~~~~~~~~~g~ 426 (430)
.. ...+++.++++..++
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~ 175 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGY 175 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCC
Confidence 21 123566666666664
No 230
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.20 E-value=1.8e-10 Score=121.32 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=88.5
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCC--CC-----CCc------CCCccceEEEEEE--Ec---CCCeEEEEEEeCCChhH
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRP--FS-----DNY------TPTTDERYAVNVV--DQ---PGGTKKTVVLREIPEEA 346 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~--~~-----~~~------~~t~~~~~~~~~v--~~---~~~~~~~~i~d~~G~e~ 346 (430)
.-+|+++|..++|||||+.+++... +. ... ..+.|.++....+ .+ ++....+.+|||+|+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999997532 11 010 0122333332222 22 44457788999999999
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
|...+ ..+++.+|++++|+|+++.........|..... . ++|+++|+||+|+..... .....++.+.+++
T Consensus 87 F~~~v--~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~------~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSYEV--SRSLAACEGALLVVDASQGVEAQTLANVYLALE-N------DLEIIPVLNKIDLPAADP-ERVKQEIEDVIGI 156 (600)
T ss_pred HHHHH--HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C------CCCEEEEEECCCCCcccH-HHHHHHHHHHhCC
Confidence 98777 678899999999999998655555555544332 1 689999999999975322 2334455555554
No 231
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.20 E-value=7.2e-11 Score=116.40 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=81.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhHHH---------hhhcc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA---------KLLSN 353 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~---------~~~~~ 353 (430)
..+||+++|.||||||||+|++++.+....+. +.++.+.....++++ ...+.++||+|-.+-. +...+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~--~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD--GRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC--CeEEEEEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999998777662 333333333445544 4667789999943211 11233
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
...+..+|++++|.|++.+-+-+.. .....+.+. +.++|+|.||+|+.++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~------g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA------GRGIVIVVNKWDLVEE 304 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc------CCCeEEEEEccccCCc
Confidence 5567889999999999976443332 222233332 6899999999999875
No 232
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=1.1e-10 Score=105.39 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=79.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc------------------CCCccceEEEEEEEcCCCeEEEEEEeCCChh
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 345 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~------------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e 345 (430)
+..+|+++|..++|||||+.+++........ ....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999854422110 0112222222333312356788899999998
Q ss_pred HHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 346 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 346 ~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.|.... ...++.+|++|+|+|+.+.-.- ...+.+..+... ++|+++|.||+|+..
T Consensus 82 ~f~~~~--~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~------~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEM--IRGLRQADIAILVVDANDGIQP-QTEEHLKILREL------GIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHH--HHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT------T-SEEEEEETCTSSH
T ss_pred ceeecc--cceecccccceeeeeccccccc-cccccccccccc------ccceEEeeeeccchh
Confidence 877765 5668899999999999864332 233444444443 689999999999984
No 233
>PRK10218 GTP-binding protein; Provisional
Probab=99.20 E-value=2.5e-10 Score=119.66 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=86.0
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhC--CCCCCCc------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLG--RPFSDNY------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK 349 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~--~~~~~~~------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~ 349 (430)
..-+|+++|..++|||||+++++. +.+.... ..+.+.++..+...+..+...+.+||++|+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 345899999999999999999986 3332221 12445555555555554567889999999999988
Q ss_pred hhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 350 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.+ ..+++.+|++++|+|+++... .....++..+... ++|+++|+||+|+...
T Consensus 84 ~v--~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~~------gip~IVviNKiD~~~a 135 (607)
T PRK10218 84 EV--ERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFAY------GLKPIVVINKVDRPGA 135 (607)
T ss_pred HH--HHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHHc------CCCEEEEEECcCCCCC
Confidence 77 678899999999999986422 2333444444433 6899999999999764
No 234
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.19 E-value=1.3e-10 Score=121.98 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=75.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCC----CccceEEEEEEE--cCCCe-----E-----EEEEEeCCChhHHHh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP----TTDERYAVNVVD--QPGGT-----K-----KTVVLREIPEEAVAK 349 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~----t~~~~~~~~~v~--~~~~~-----~-----~~~i~d~~G~e~~~~ 349 (430)
..|+++|.+++|||||++++.+......... ++|..+...... ..+.. . .+.+|||+|++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 4699999999999999999987755433321 222222111000 00000 0 157999999999998
Q ss_pred hhccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 350 LLSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
++ ...++.+|++++|+|+++ ++++..+..+ ... ++|+++++||+|+.
T Consensus 87 ~~--~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~~------~vpiIvviNK~D~~ 136 (586)
T PRK04004 87 LR--KRGGALADIAILVVDINEGFQPQTIEAINIL----KRR------KTPFVVAANKIDRI 136 (586)
T ss_pred HH--HHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HHc------CCCEEEEEECcCCc
Confidence 87 567788999999999987 5666655422 221 68999999999985
No 235
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.19 E-value=3.2e-10 Score=102.87 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=83.0
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCC------CCc--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFS------DNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 350 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~------~~~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~ 350 (430)
.++|+++|..++|||||+++++..... ..+ ....+.+.....+.+..+...+.++||+|...+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 378999999999999999999753100 000 001222333333334334556789999999877654
Q ss_pred hccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccC----cHHHHHHHHHHhC
Q 014101 351 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVFTFLV 425 (430)
Q Consensus 351 ~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v----~~~~~~~~~~~~g 425 (430)
. ...+..+|++++|+|++..-. ......+..+... ++| +|+|.||+|+..+.. ..+++.++...+|
T Consensus 82 ~--~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 82 M--ITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred H--HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4 566789999999999975321 2233344444433 466 789999999964321 1335556655555
Q ss_pred C
Q 014101 426 M 426 (430)
Q Consensus 426 ~ 426 (430)
.
T Consensus 153 ~ 153 (195)
T cd01884 153 F 153 (195)
T ss_pred c
Confidence 3
No 236
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.18 E-value=7e-11 Score=107.55 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccc---eEEEEEEEcCCCeEEEEEEeCCChhHH----Hhhhccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE---RYAVNVVDQPGGTKKTVVLREIPEEAV----AKLLSNKDSLA 358 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~---~~~~~~v~~~~~~~~~~i~d~~G~e~~----~~~~~~~~~~~ 358 (430)
+||+++|.+|||||||+|.+++.........+.+. +.....+..+ ....+.+||++|.... ..... ...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~-~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLE-EMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHH-HhCcc
Confidence 79999999999999999999986654322222221 1111112222 2235678999996321 11110 22357
Q ss_pred cccEEEEEEECCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 359 ACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 359 ~ad~vilv~D~t~~~S~~~~~-~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+|++++|.+ .+|.... .|+..+... +.|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHHh------CCCEEEEEecccchh
Confidence 7899888843 2344433 344545443 479999999999943
No 237
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.18 E-value=2.3e-10 Score=120.12 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=82.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCC--CCCCCc------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGR--PFSDNY------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS 352 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~--~~~~~~------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~ 352 (430)
+|+++|..++|||||+.+++.. .+.... ....|.++..+...+......+.+|||+|+..|....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev- 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV- 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH-
Confidence 7999999999999999999852 222211 0122333333333333335778899999999988766
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
..+++.+|++++|+|+++ ....+...|+..+... ++|+++|+||+|+.+.
T Consensus 82 -~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 82 -ERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALEL------GLKPIVVINKIDRPSA 131 (594)
T ss_pred -HHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC------CCCEEEEEECCCCCCc
Confidence 678899999999999986 3345556677766653 5899999999999764
No 238
>PLN02964 phosphatidylserine decarboxylase
Probab=99.18 E-value=1.3e-10 Score=121.15 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=83.2
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcC-CCCCHHH---HHHHHHHHHhhhcCCccCCC-cCHHhHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFN-SPLQPSE---IVGVKRVVQEKLREGVNERG-LTLAGFLFL 124 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g-~~~~~~e---~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~ 124 (430)
.++..++++++++|..||+|+||.| |+.+++.+ | ..+++++ ++.+++.+ |.+++| |+|+||+.+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~fi~~mf~~~------D~DgdG~IdfdEFl~l 204 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETERSFARRILAIV------DYDEDGQLSFSEFSDL 204 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHHHHHHHHHHHh------CCCCCCeEcHHHHHHH
Confidence 5677889999999999999999997 88887664 6 4677777 67888877 677889 999999998
Q ss_pred HHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhh
Q 014101 125 HALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLF 204 (430)
Q Consensus 125 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~ 204 (430)
+..+.. ....+.++++|+.||+|+||+|+.+||++++
T Consensus 205 L~~lg~-------------------------------------------~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 205 IKAFGN-------------------------------------------LVAANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred HHHhcc-------------------------------------------CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 752110 0113458899999999999999999999998
Q ss_pred cc
Q 014101 205 ST 206 (430)
Q Consensus 205 ~~ 206 (430)
..
T Consensus 242 ~~ 243 (644)
T PLN02964 242 AL 243 (644)
T ss_pred Hh
Confidence 76
No 239
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.1e-10 Score=99.25 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=92.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 365 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vil 365 (430)
-|++++|-.|+|||||++.+..++..+-. ||..++. ..+.+ +...+..+|..|+..-+..+ ..++-.+|++++
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTlHPTS--E~l~I--g~m~ftt~DLGGH~qArr~w--kdyf~~v~~iv~ 93 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELSI--GGMTFTTFDLGGHLQARRVW--KDYFPQVDAIVY 93 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC-CCcCCCh--HHhee--cCceEEEEccccHHHHHHHH--HHHHhhhceeEe
Confidence 39999999999999999999888765433 4443322 12233 34667789999999999998 889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 366 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 366 v~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.+|+.|.+.|.+.+.-+..+......+ ++|+++.+||+|.+..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la--~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLA--TVPFLILGNKIDIPYA 136 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHh--cCcceeecccccCCCc
Confidence 999999999998888777766544332 7999999999999874
No 240
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.16 E-value=1.4e-10 Score=90.77 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcC-CCCCccCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHH
Q 014101 53 PRCVRALKRIFILCDH-DRDGALSDAELNDFQVKCFNSPLQP-SEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALF 128 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~dG~is~~El~~~~~~~~g~~~~~-~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~ 128 (430)
+..+..|+++|+.||+ |++|+|+.+||+.++.+-+|..++. ++++.+++.+ |.|++| |+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~------D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNL------DVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHh------CCCCCCCCcHHHHHHHHHHH
Confidence 5678899999999999 9999999999999988746777888 9999999998 788999 9999999987643
No 241
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.13 E-value=9.5e-10 Score=104.78 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=74.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCC--CCC---Cc-------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRP--FSD---NY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~--~~~---~~-------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
+|+++|.+|+|||||+++++... ... .. ...++.+.....+.+. ...+.++||+|...+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 47999999999999999996311 100 00 0112222222334444 4567789999988777
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
... ...++.+|++++|+|+++.-.- .....+..+... ++|+++++||+|+.+
T Consensus 79 ~~~--~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~~------~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEV--ERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADRY------NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHH--HHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHHc------CCCEEEEEECCCCCC
Confidence 665 6788999999999999764221 223344444433 689999999999975
No 242
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.13 E-value=3e-10 Score=116.91 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=99.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc----ccccc--cc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS----NKDSL--AA 359 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~----~~~~~--~~ 359 (430)
.+|+++|+||||||||.|++++.......-|..+++.....+...++. +.++|.+|--.+..... ++.++ .+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 579999999999999999999999887777888888888788777533 77899988422222110 02222 45
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 360 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 360 ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
.|+++-|.|+++.+.--.+. -++.+. +.|++++.|++|..+++.-.-+.+++.+.+|+|.+
T Consensus 82 ~D~ivnVvDAtnLeRnLylt---lQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv 142 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLT---LQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVV 142 (653)
T ss_pred CCEEEEEcccchHHHHHHHH---HHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEE
Confidence 79999999999855432222 233333 68999999999999987667788999999999865
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.13 E-value=5.1e-10 Score=115.95 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=85.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhC--CCCCCC-------------c--C---CCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLG--RPFSDN-------------Y--T---PTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~--~~~~~~-------------~--~---~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...+|+|+|.+++|||||+++++. +..... . . ...+.++....+.+..+...+.+|||+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 345899999999999999999963 211100 0 0 0112223323233333356788999999
Q ss_pred hhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHH
Q 014101 344 EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 423 (430)
Q Consensus 344 ~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~ 423 (430)
+..|.... ...++.+|++++|+|+++.-. .....++...... ++|+++++||+|+.... ..+...++.+.
T Consensus 89 ~~df~~~~--~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~~------~iPiiv~iNK~D~~~a~-~~~~l~~i~~~ 158 (526)
T PRK00741 89 HEDFSEDT--YRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRLR------DTPIFTFINKLDRDGRE-PLELLDEIEEV 158 (526)
T ss_pred chhhHHHH--HHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHhc------CCCEEEEEECCcccccC-HHHHHHHHHHH
Confidence 98887755 567899999999999987422 1233444443332 68999999999987633 22334455555
Q ss_pred hCCc
Q 014101 424 LVMV 427 (430)
Q Consensus 424 ~g~~ 427 (430)
++.+
T Consensus 159 l~~~ 162 (526)
T PRK00741 159 LGIA 162 (526)
T ss_pred hCCC
Confidence 5543
No 244
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=4.6e-10 Score=100.00 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=97.1
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
...++.+++.+-+-|.. .-..|.++.++++.++...|...-++.-.+.+++.+ |.+++| |+|.||+..+..
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~f------D~~~dg~i~F~Efi~als~ 92 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTF------DKNKDGTIDFLEFICALSL 92 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHh------cccCCCCcCHHHHHHHHHH
Confidence 34555555555555554 334899999999999888776444455555666666 678889 999999987542
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc-
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST- 206 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~- 206 (430)
.. ++ ...+.|+=+|++||.||||+||.+|+-.+...
T Consensus 93 ~~-rG------------------------------------------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 93 TS-RG------------------------------------------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred Hc-CC------------------------------------------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 11 11 11234667899999999999999999876654
Q ss_pred ---CCC--CC---CC----CCcccccccccCCcccchhhHHhh
Q 014101 207 ---APE--CP---WD----EAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 207 ---~~~--~~---~~----~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
.+. .| .. .+.+.+.+|.|.||.||++||+..
T Consensus 130 ~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 130 YQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred HHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 221 11 11 124668999999999999999976
No 245
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.12 E-value=4.2e-10 Score=108.18 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=97.1
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
..++++-...++.+|+.||.++||.++..+|...+.++-..+...+-...+++.. |.+.+| +||+||-..+..
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~------d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAM------DANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhc------ccCcCCcccHHHHHHHHHH
Confidence 3456777789999999999999999999999988776543336666677777776 678888 999999876431
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccC
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 207 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~ 207 (430)
.+..|.++|...|.|.||.|+.+|+.+-++..
T Consensus 80 ------------------------------------------------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 80 ------------------------------------------------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred ------------------------------------------------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh
Confidence 12335667777777777777777777766654
Q ss_pred CCCCC--CCCcccccccccCCcccchhhHHhhhhhh
Q 014101 208 PECPW--DEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 208 ~~~~~--~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
+..-. ..+.+.++.|.++++.|+++||-..-.+.
T Consensus 112 gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 112 GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 33221 11235567777777777777766654433
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.10 E-value=1.1e-09 Score=113.57 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=77.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhC--CCCCCC-------------c-----CCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLG--RPFSDN-------------Y-----TPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~--~~~~~~-------------~-----~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...+|+|+|.+++|||||+++++. +..... . ....+.++....+.+..+...+.+|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 445999999999999999999852 211100 0 00112333333344443457788999999
Q ss_pred hhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 344 EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 344 ~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+..|.... ...++.+|++++|+|+++.- ......++...... ++|+++++||+|+..
T Consensus 90 ~~df~~~~--~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~------~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDT--YRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRLR------DTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHH--HHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHhc------CCCEEEEEECccccC
Confidence 98877654 56789999999999998631 12233444433322 689999999999875
No 247
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.10 E-value=1.1e-09 Score=101.34 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=71.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCC---------------------------Cc----CCCccceEEEEEEEcCCCeEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSD---------------------------NY----TPTTDERYAVNVVDQPGGTKK 335 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~---------------------------~~----~~t~~~~~~~~~v~~~~~~~~ 335 (430)
+|+++|..++|||||+.+++...-.. .. ...++.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 47999999999999999996321100 00 0111222222333333 467
Q ss_pred EEEEeCCChhHHHhhhccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 336 TVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESS---WK---RATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 336 ~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S---~~---~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+.+||++|+..+.... ...+..+|++++|+|+++... |. .....+....... ..|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~~--~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNM--ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG-----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHH--HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC-----CCeEEEEEEcccccc
Confidence 8899999987776544 456788999999999987421 11 2222222222221 368999999999983
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.09 E-value=6.5e-10 Score=104.23 Aligned_cols=138 Identities=22% Similarity=0.178 Sum_probs=98.6
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChh----HHHhhh-ccccccc
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----AVAKLL-SNKDSLA 358 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e----~~~~~~-~~~~~~~ 358 (430)
.+..|-+||-||+|||||++.+...+......+.++....+.++.+++ ...+.+-|.+|-- .-+.+- .-...++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHH
Confidence 345689999999999999999999988777767666666666677663 3446677877721 111110 0124668
Q ss_pred cccEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 359 ACDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 359 ~ad~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
.|+.+++|+|++.. +.++.+...+.++..+.... .+.|.++|+||+|+++.+. ....++++.+.
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L-~~rp~liVaNKiD~~eae~--~~l~~L~~~lq 340 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL-ADRPALIVANKIDLPEAEK--NLLSSLAKRLQ 340 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh-ccCceEEEEeccCchhHHH--HHHHHHHHHcC
Confidence 89999999999998 88999998888887775543 2789999999999965221 12355555554
No 249
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.6e-10 Score=112.61 Aligned_cols=126 Identities=20% Similarity=0.135 Sum_probs=85.7
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhH-----HH--hhhccc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEA-----VA--KLLSNK 354 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-----~~--~~~~~~ 354 (430)
+..++|+++|+||||||||+|.|.+.+....+. |.++.+.....++++ ..++.+.||+|-.. .. .+..+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--GVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--CeEEEEEeccccccccCChhHHHhHHHHH
Confidence 455899999999999999999999999887762 333333333455555 46777899999533 11 122446
Q ss_pred cccccccEEEEEEEC--CChhhHHHHHHHHHHHHhcCC---CCCCCCcEEEEEeCCCCCCc
Q 014101 355 DSLAACDIAVFVHDS--SDESSWKRATELLVEVASYGE---DTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 355 ~~~~~ad~vilv~D~--t~~~S~~~~~~~l~~l~~~~~---~~~~~~PiilVgnK~Dl~~~ 410 (430)
..++.+|++++|+|+ ++-++-..+.+.+........ ......|++++.||+|+...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 677899999999999 554554455555554333211 11124789999999999764
No 250
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.08 E-value=6e-10 Score=87.34 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCD-HDRDG-ALSDAELNDFQVK----CFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG-~is~~El~~~~~~----~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+..+..|+++|+.|| +|||| .|+.+||+.+++. .+|..+++++++.+++.+ |.+++| |+|+||+.++
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~------D~n~dG~v~f~eF~~li 77 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL------DSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh------CCCCCCcCcHHHHHHHH
Confidence 456889999999998 89999 5999999999887 357778999999999998 678888 9999999987
Q ss_pred H
Q 014101 126 A 126 (430)
Q Consensus 126 ~ 126 (430)
.
T Consensus 78 ~ 78 (88)
T cd05027 78 A 78 (88)
T ss_pred H
Confidence 5
No 251
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.1e-10 Score=107.45 Aligned_cols=149 Identities=21% Similarity=0.272 Sum_probs=97.2
Q ss_pred CccHH-HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 50 ALKPR-CVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 50 ~lt~~-~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
+|+++ ....|.++|..+|.|+||.|+..||.+..+.......-. ...+.+... |.+.+| |+++|++..+..
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~----~~~~~~~~~---d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVE----EAARRWDEY---DKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHH----HHHHHHHHh---ccCccceeeHHHhhhhhhh
Confidence 45444 457899999999999999999999999976653332112 222222222 667889 999999876421
Q ss_pred HHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHH---HHHHHHhcCCCCCCCCHHHHHHhh
Q 014101 128 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFL---KGIFELFDADDDNSLRPIEVEDLF 204 (430)
Q Consensus 128 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l---~~~F~~fD~d~dG~is~~el~~~~ 204 (430)
.. . . | ......+.....+..+ ++-|++-|.||||.+|.+||...+
T Consensus 142 ~~------------------~----~----~------~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL 189 (325)
T KOG4223|consen 142 RV------------------D----L----P------DEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL 189 (325)
T ss_pred cc------------------c----C----c------cccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc
Confidence 10 0 0 0 0001112222222222 348999999999999999999988
Q ss_pred ccC--CCCC-CCCCcccccccccCCcccchhhHHhh
Q 014101 205 STA--PECP-WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 205 ~~~--~~~~-~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
... |.+. |-+.+-+...|.|+||.|+++||+.-
T Consensus 190 HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 190 HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 752 2221 33333446899999999999999976
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.07 E-value=6.5e-10 Score=102.83 Aligned_cols=117 Identities=13% Similarity=0.215 Sum_probs=75.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc---CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh---hccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY---TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL---LSNKDSLAAC 360 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~---~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~---~~~~~~~~~a 360 (430)
||+++|++++||||+.+-+.++-.+... .+|... ....+... +...+.+||.+|+..+... ......++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999877544322 133332 22344444 5668899999998654432 1235677999
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 361 DIAVFVHDSSDES---SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 361 d~vilv~D~t~~~---S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.++|+|+|+.+.+ .+..+...+..+.+.+ +++.+.+..+|+|+...
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s----p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS----PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS----TT-EEEEEEE-CCCS-H
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC----CCCeEEEEEeecccCCH
Confidence 9999999998443 3444555666666665 47899999999999764
No 253
>PRK12735 elongation factor Tu; Reviewed
Probab=99.07 E-value=2e-09 Score=108.45 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=83.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC-------CCCC---Cc----CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR-------PFSD---NY----TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~-------~~~~---~~----~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
++.++|+++|..++|||||++++++. .+.. .. ....|.+.......+..+...+.++||+|++.|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999999862 1100 00 0112233333333343334567899999998776
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEE-EEEeCCCCCCccCc----HHHHHHHHHH
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCL-IVAAKDDLDSFAMA----IQDSTRVFTF 423 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pii-lVgnK~Dl~~~~v~----~~~~~~~~~~ 423 (430)
... ...+..+|++++|+|+++... ....+.+..+... ++|.+ +++||+|+.+.... ..++.++.+.
T Consensus 90 ~~~--~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 90 KNM--ITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHH--HhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 544 456678999999999986321 2223444444332 57755 67999999753211 2356666666
Q ss_pred hC
Q 014101 424 LV 425 (430)
Q Consensus 424 ~g 425 (430)
++
T Consensus 161 ~~ 162 (396)
T PRK12735 161 YD 162 (396)
T ss_pred cC
Confidence 54
No 254
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.07 E-value=1.5e-09 Score=109.35 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=85.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCC------C------CCc--CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPF------S------DNY--TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~------~------~~~--~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
.++.++|+++|..++|||||+++|++... . ... ....|.+.....+.+......+.+||++|++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 35678999999999999999999974310 0 000 011233333344555444567789999999888
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEeCCCCCCccC----cHHHHHHHHH
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAAKDDLDSFAM----AIQDSTRVFT 422 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pi-ilVgnK~Dl~~~~v----~~~~~~~~~~ 422 (430)
.... ......+|++++|+|+++.-.. ...+.+..+... ++|. |+|+||+|+.+.+. ..+++.++++
T Consensus 89 ~~~~--~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 89 VKNM--ITGAAQMDGAILVVSATDGPMP-QTREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 6544 3455788999999999863211 122333333332 4665 47899999976321 1346777777
Q ss_pred HhC
Q 014101 423 FLV 425 (430)
Q Consensus 423 ~~g 425 (430)
.++
T Consensus 160 ~~~ 162 (394)
T TIGR00485 160 EYD 162 (394)
T ss_pred hcC
Confidence 766
No 255
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.06 E-value=2.3e-09 Score=113.15 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=81.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCC---CCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~---~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
-|+++|..++|||||++++++.. +.......++.+.....+..++ ...+.+||++|++.|.... ...+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m--~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNM--LAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHH--HHHhhcCCEE
Confidence 47899999999999999999743 2222222333333323344442 3346899999999886554 4667899999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccC---cHHHHHHHHHHhC
Q 014101 364 VFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM---AIQDSTRVFTFLV 425 (430)
Q Consensus 364 ilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v---~~~~~~~~~~~~g 425 (430)
++|+|+++ +.+.+.+ ..+... ++| +++|+||+|+.++.. ..+++.++....+
T Consensus 79 lLVVda~eg~~~qT~ehl----~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~ 137 (614)
T PRK10512 79 LLVVACDDGVMAQTREHL----AILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG 137 (614)
T ss_pred EEEEECCCCCcHHHHHHH----HHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC
Confidence 99999986 3333333 222222 355 679999999976321 1345555655544
No 256
>CHL00071 tufA elongation factor Tu
Probab=99.06 E-value=2e-09 Score=108.91 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=84.8
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCC------Cc--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD------NY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~------~~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
.++.++|+++|.+++|||||++++++..-.. .+ ....|.+.......+..+...+.++|++|+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4566899999999999999999998642110 00 001222222222333333456778999998877
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccCc----HHHHHHHHH
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAMA----IQDSTRVFT 422 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v~----~~~~~~~~~ 422 (430)
.... ...+..+|++++|+|++..- ..+..+.+..+... ++| +|++.||+|+.+.... ..++.++.+
T Consensus 89 ~~~~--~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 89 VKNM--ITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred HHHH--HHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 6544 45678899999999997532 12233334334333 578 7789999999763221 235566655
Q ss_pred HhC
Q 014101 423 FLV 425 (430)
Q Consensus 423 ~~g 425 (430)
..+
T Consensus 160 ~~~ 162 (409)
T CHL00071 160 KYD 162 (409)
T ss_pred HhC
Confidence 554
No 257
>PRK13351 elongation factor G; Reviewed
Probab=99.05 E-value=1.5e-09 Score=117.07 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=85.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCC-------------C-------cCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD-------------N-------YTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-------------~-------~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...+|+|+|..|+|||||+++++...-.. . ...|+. .....+.+. ...+.+|||+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEEC--CEEEEEEECCC
Confidence 45699999999999999999997432100 0 011111 112233333 46788999999
Q ss_pred hhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHH
Q 014101 344 EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 423 (430)
Q Consensus 344 ~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~ 423 (430)
+..+.... ..+++.+|++++|+|+++..+......| ..+... ++|+++|+||+|+..... ....+++...
T Consensus 83 ~~df~~~~--~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~------~~p~iiviNK~D~~~~~~-~~~~~~i~~~ 152 (687)
T PRK13351 83 HIDFTGEV--ERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY------GIPRLIFINKMDRVGADL-FKVLEDIEER 152 (687)
T ss_pred cHHHHHHH--HHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc------CCCEEEEEECCCCCCCCH-HHHHHHHHHH
Confidence 98887766 6788999999999999987666554434 333332 689999999999987421 2333444444
Q ss_pred hCC
Q 014101 424 LVM 426 (430)
Q Consensus 424 ~g~ 426 (430)
++.
T Consensus 153 l~~ 155 (687)
T PRK13351 153 FGK 155 (687)
T ss_pred HCC
Confidence 443
No 258
>PLN03126 Elongation factor Tu; Provisional
Probab=99.04 E-value=3.1e-09 Score=108.80 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=85.7
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCC------CCCc--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhH
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPF------SDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA 346 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~------~~~~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~ 346 (430)
..++.++|+++|..++|||||+++|++... ...+ ....+.+.......+......+.++|++|++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 356779999999999999999999985211 1100 11122222222222322345678999999988
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccC----cHHHHHHHH
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVF 421 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v----~~~~~~~~~ 421 (430)
|.... ...+..+|++++|+|+++... ....+++..+... ++| +|++.||+|+.+.+. ..+++.++.
T Consensus 157 f~~~~--~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 157 YVKNM--ITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred HHHHH--HHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 86544 455678999999999886422 2334444444433 577 788999999976321 123555665
Q ss_pred HHhC
Q 014101 422 TFLV 425 (430)
Q Consensus 422 ~~~g 425 (430)
+..|
T Consensus 228 ~~~g 231 (478)
T PLN03126 228 SSYE 231 (478)
T ss_pred HhcC
Confidence 5544
No 259
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.04 E-value=1.4e-09 Score=86.37 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCD-HDRDG-ALSDAELNDFQVKCF----NSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG-~is~~El~~~~~~~~----g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+..+..++++|+.|| +|+|| .||.+||+.++.+.+ +...++.+++.|++.+ |.+++| |+|+||+.++
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~el------D~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDL------DSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHh------CCCCCCCCCHHHHHHHH
Confidence 556889999999999 89999 599999999987643 3344778999999999 678888 9999999987
Q ss_pred HHH
Q 014101 126 ALF 128 (430)
Q Consensus 126 ~~~ 128 (430)
...
T Consensus 80 ~~l 82 (93)
T cd05026 80 AAL 82 (93)
T ss_pred HHH
Confidence 643
No 260
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.2e-10 Score=93.99 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=93.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
...+|+++|-.|+|||+++.++.-++...+- ||++... ..++.. ..++.+||..|+-..+..| +.|+.+.|++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnv--e~v~yK--NLk~~vwdLggqtSirPyW--RcYy~dt~av 89 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNV--ETVPYK--NLKFQVWDLGGQTSIRPYW--RCYYADTDAV 89 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCc--cccccc--cccceeeEccCcccccHHH--HHHhcccceE
Confidence 4579999999999999999999877765544 7877544 445543 5778899999999999999 8999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
|+|+|.+|++........+..+....... +..++|++||.|....
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq--~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQ--HAKLLVFANKQDYSGA 134 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhc--CceEEEEeccccchhh
Confidence 99999999888776666555555443332 5778999999998873
No 261
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=5e-10 Score=104.97 Aligned_cols=138 Identities=23% Similarity=0.279 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hcCCccCCC-cCHHhHHHHHHHHHHcCC
Q 014101 57 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEK--LREGVNERG-LTLAGFLFLHALFIEKGR 133 (430)
Q Consensus 57 ~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~--~~~d~~~~g-i~~~eFl~~~~~~~~~~~ 133 (430)
..=++-|+.-|.|+||.++.+|+.+||- +++...|...+-.. .--|.|++| |+++||+.=|...-. ..
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLH--------PEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~-~~ 233 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLH--------PEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG-NE 233 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccC--------hhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC-CC
Confidence 3447889999999999999999998842 23333333332211 111678999 999999974321000 00
Q ss_pred chhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCC--
Q 014101 134 LETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP-- 211 (430)
Q Consensus 134 ~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~-- 211 (430)
.+.-| .+++. .+.|...|+|+||+|+.+|+....-. ...
T Consensus 234 ~epeW--------------------------------v~~Er-----e~F~~~~DknkDG~L~~dEl~~WI~P--~~~d~ 274 (325)
T KOG4223|consen 234 EEPEW--------------------------------VLTER-----EQFFEFRDKNKDGKLDGDELLDWILP--SEQDH 274 (325)
T ss_pred CCccc--------------------------------ccccH-----HHHHHHhhcCCCCccCHHHHhcccCC--CCccH
Confidence 01111 11111 15677779999999999999976543 221
Q ss_pred --CCCCcccccccccCCcccchhhHHhhhhhhh
Q 014101 212 --WDEAPYKDAAEKTALGGLSLDGFLSEWALMT 242 (430)
Q Consensus 212 --~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~ 242 (430)
....-++-++|.|+||++|++|-+..|.++.
T Consensus 275 A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~Fv 307 (325)
T KOG4223|consen 275 AKAEARHLLHEADEDKDGKLSKEEILEHYDVFV 307 (325)
T ss_pred HHHHHHHHhhhhccCccccccHHHHhhCcceee
Confidence 1112355689999999999999999998763
No 262
>PRK12736 elongation factor Tu; Reviewed
Probab=99.01 E-value=4.6e-09 Score=105.73 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=85.4
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCC------------Cc--CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD------------NY--TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~------------~~--~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
.++.++|+++|..++|||||++++++..... .. ....|.+.......+..+...+.++|++|++.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3566899999999999999999998631100 00 012233333334444434556789999999887
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccCc----HHHHHHHHH
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAMA----IQDSTRVFT 422 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v~----~~~~~~~~~ 422 (430)
.... ...+..+|++++|+|+++.-. ....+.+..+... ++| +|+|+||+|+.+.+.. .++..++.+
T Consensus 89 ~~~~--~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 89 VKNM--ITGAAQMDGAILVVAATDGPM-PQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 6544 455678999999999986311 2223333333333 467 6789999999753211 235666666
Q ss_pred HhCC
Q 014101 423 FLVM 426 (430)
Q Consensus 423 ~~g~ 426 (430)
..+.
T Consensus 160 ~~~~ 163 (394)
T PRK12736 160 EYDF 163 (394)
T ss_pred HhCC
Confidence 5553
No 263
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.01 E-value=3.7e-09 Score=98.05 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=71.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCC----------------C-------ccceEEE---------------EEEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTP----------------T-------TDERYAV---------------NVVD 328 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~----------------t-------~~~~~~~---------------~~v~ 328 (430)
||+++|+.++|||||+++|..+.+...... | .+.+..- ..++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997666432100 0 0000000 0111
Q ss_pred cCCCeEEEEEEeCCChhHHHhhhcccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 329 QPGGTKKTVVLREIPEEAVAKLLSNKDSL--AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 329 ~~~~~~~~~i~d~~G~e~~~~~~~~~~~~--~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
. ....+.++|++|++.|.... ...+ ..+|++++|+|+....+ .....++..+... ++|+++|.||+|
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~--~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~------~ip~ivvvNK~D 149 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTT--LFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL------NIPVFVVVTKID 149 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHH--HHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc------CCCEEEEEECcc
Confidence 1 23456789999998886543 2223 46899999999876432 2233344444433 589999999999
Q ss_pred CCCc
Q 014101 407 LDSF 410 (430)
Q Consensus 407 l~~~ 410 (430)
+.++
T Consensus 150 ~~~~ 153 (224)
T cd04165 150 LAPA 153 (224)
T ss_pred ccCH
Confidence 8764
No 264
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.01 E-value=2e-09 Score=86.10 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=61.2
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 49 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 49 ~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
..++++++..++++|..||+|++|.|+.+||..+++. .| ++++++..|++.+ |.+++| |+|+||+.++.
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~--~~~~ev~~i~~~~------d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLK-SG--LPQTLLAKIWNLA------DIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-cC--CCHHHHHHHHHHh------cCCCCCCcCHHHHHHHHH
Confidence 4689999999999999999999999999999999876 34 6788999999988 566778 99999999865
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.00 E-value=7.7e-09 Score=93.99 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=71.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC--CCccceEEEEEEEcCCCeEEEEEEeCCChhHH-------H-hhhc-cc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT--PTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-------A-KLLS-NK 354 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~--~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~-------~-~~~~-~~ 354 (430)
++|+++|.+|||||||+|.+++........ +..+.........+. ...+.++||||-... . .+.. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 379999999999999999999987543331 222222222333444 346788999994221 1 1110 01
Q ss_pred cccccccEEEEEEECCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 355 DSLAACDIAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~-~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.....+|++++|.++.+. .....+.+++..+.... .-.++++|.||+|....
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~----~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK----VLDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH----hHhcEEEEEECccccCC
Confidence 234678999999998762 12223344444432211 12578899999997653
No 266
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.99 E-value=3.2e-09 Score=107.26 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=73.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc---C--CCccceEEEE------------EEEc----CC------CeEEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---T--PTTDERYAVN------------VVDQ----PG------GTKKT 336 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~---~--~t~~~~~~~~------------~v~~----~~------~~~~~ 336 (430)
+.++|+++|..++|||||++++.+....... . -|+...+... .+.. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999754221100 0 0111111000 0001 00 13467
Q ss_pred EEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 337 VVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 337 ~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.+||++|++.|...+ ...+..+|++++|+|+++.....+..+.+..+.... ..|+++|+||+|+.+.
T Consensus 83 ~liDtPGh~~f~~~~--~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHETLMATM--LSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHHHHHHH--HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEccccCCH
Confidence 899999999987765 456678899999999986321122222333332221 2468999999999763
No 267
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.5e-09 Score=94.95 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccc---cccEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA---ACDIA 363 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~---~ad~v 363 (430)
.|+++|+++||||+|.-++..+.+..+. +.+.+.-.. ..+. .....++|.||+.+.+.-. ..++. .+-+|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn~a~--~r~g--s~~~~LVD~PGH~rlR~kl--~e~~~~~~~akai 112 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPNEAT--YRLG--SENVTLVDLPGHSRLRRKL--LEYLKHNYSAKAI 112 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCee-eeeccceee--Eeec--CcceEEEeCCCcHHHHHHH--HHHccccccceeE
Confidence 7899999999999999999988665554 233332221 2222 2336789999999888755 34554 78999
Q ss_pred EEEEECC-ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 364 VFVHDSS-DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 364 ilv~D~t-~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+||+|.. ...-...+.+++..+..........+|+++++||.|+...
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999975 3455667777777766554222237899999999999763
No 268
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.98 E-value=5e-09 Score=112.80 Aligned_cols=131 Identities=15% Similarity=0.012 Sum_probs=85.1
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCC-----Cc-------------CCCccceEEEEEEEcCCCeEEEEEEeCCChh
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD-----NY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 345 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-----~~-------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e 345 (430)
+..+|+|+|..|+|||||+++++...-.. .. ...++.+.....+.+. ...+.+|||+|+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCc
Confidence 45599999999999999999996321110 00 0122222333444444 4677899999998
Q ss_pred HHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 346 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 346 ~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
.+.... ...++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+.... ......++.+.++
T Consensus 87 ~~~~~~--~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~------~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 87 DFTVEV--ERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY------EVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred chhHHH--HHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 776654 5778999999999999875444332 333334332 58999999999998633 2233445545444
Q ss_pred C
Q 014101 426 M 426 (430)
Q Consensus 426 ~ 426 (430)
.
T Consensus 157 ~ 157 (689)
T TIGR00484 157 A 157 (689)
T ss_pred C
Confidence 3
No 269
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=1.1e-09 Score=81.07 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHH----HHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGV----KRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i----~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
.|+++|+.||+|+||+|+.+||..++... +.+.+.++...+ ++.+ |.+++| |+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~------D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREF------DTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHH------TTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHh------CCCCcCCCcHHHHhccC
Confidence 47999999999999999999999997764 655555555544 6666 778899 9999999874
No 270
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=100.00 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=83.4
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH-------HHhhhcc
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSN 353 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~-------~~~~~~~ 353 (430)
.....++|+++|.+|||||||||+++.+...+...-..+.+......... +...+.+||++|-+. ++...
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~-- 111 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLY-- 111 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHH--
Confidence 35667899999999999999999999877665553333333332323222 236678999999543 55555
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
..++...|.++++.++.|+.- .--.+++..+..... +.|+++++|.+|....
T Consensus 112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGL----DKRVLFVVTQADRAEP 163 (296)
T ss_pred HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhcc----CceeEEEEehhhhhcc
Confidence 578889999999999987532 222334444444332 4799999999998553
No 271
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.97 E-value=4e-09 Score=106.63 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=71.0
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc---C--CCccceEEEEE------------EE----cC--C----CeEE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---T--PTTDERYAVNV------------VD----QP--G----GTKK 335 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~---~--~t~~~~~~~~~------------v~----~~--~----~~~~ 335 (430)
++.++|+++|..++|||||+.++.+....... . -|+...+.... .. .+ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999653211111 0 11111110000 00 00 0 0246
Q ss_pred EEEEeCCChhHHHhhhccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 336 TVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 336 ~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~----~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+.+||++|++.|.... ......+|++++|+|++++ .+...+. .+.... ..|+++|+||+|+.+.
T Consensus 87 i~liDtPG~~~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~~-----i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 87 VSFVDAPGHETLMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDIIG-----IKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEEECCCHHHHHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC-----CCcEEEEEEeeccccc
Confidence 7899999998876543 3445678999999999964 2333222 222221 2468999999999764
No 272
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.97 E-value=4.1e-09 Score=82.86 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhcC--CCCCccCHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCDH--DRDGALSDAELNDFQVKCFNSPL----QPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~--d~dG~is~~El~~~~~~~~g~~~----~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+++++.++++|..||+ |++|.|+.+||..+++..+|.++ +.++++.|+..+ |.+++| |+|++|+.++
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~------d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL------DVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh------ccCCCCcCcHHHHHHHH
Confidence 6788999999999999 89999999999999876455444 589999999998 567777 9999999987
Q ss_pred H
Q 014101 126 A 126 (430)
Q Consensus 126 ~ 126 (430)
.
T Consensus 78 ~ 78 (88)
T cd00213 78 G 78 (88)
T ss_pred H
Confidence 5
No 273
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.95 E-value=5.4e-10 Score=87.53 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCCHHHHHHhhcc-CCCCC---CCCCcccccccccCCcccchhhHHhhhhh
Q 014101 175 EAIDFLKGIFELFDA-DDDNSLRPIEVEDLFST-APECP---WDEAPYKDAAEKTALGGLSLDGFLSEWAL 240 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~-d~dG~is~~el~~~~~~-~~~~~---~~~~~~~~~~d~~~dg~i~~~ef~~~w~~ 240 (430)
.+..-|+++|+.||+ ||+|+|+.+||+.+++. .|... .+...+++.+|.|+||.|+|+||+.....
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 455679999999999 99999999999999987 55422 22456888999999999999999877543
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.92 E-value=2.5e-08 Score=93.77 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=74.5
Q ss_pred hhhhccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhHHH-------
Q 014101 277 KKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------- 348 (430)
Q Consensus 277 ~~~~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~------- 348 (430)
+.+......++|+|+|.+|||||||+|++++........ +..+........... ...+.+|||+|-....
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~ 100 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNR 100 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHH
Confidence 334455677999999999999999999999987644331 122222222223333 3567899999953221
Q ss_pred hhh-cccccc--ccccEEEEEEECCChh-hHH--HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 349 KLL-SNKDSL--AACDIAVFVHDSSDES-SWK--RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 349 ~~~-~~~~~~--~~ad~vilv~D~t~~~-S~~--~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
... ....++ ...|++++|..++... +.. .+..++.+...... -.++++|.||+|....
T Consensus 101 ~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i----~~~~ivV~T~~d~~~p 164 (249)
T cd01853 101 KILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI----WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh----HhCEEEEEeCCccCCC
Confidence 011 001223 2578888887665421 222 23333333322111 2579999999998653
No 275
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.92 E-value=7.9e-09 Score=81.97 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhc-CCCCCc-cCHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCD-HDRDGA-LSDAELNDFQVKCFN----SPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG~-is~~El~~~~~~~~g----~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+..+..|+++|+.|| +|++|+ |+.+||..+++..+| ..+++++++.|++.+ |.+++| |+|++|+.++
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~------D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL------DENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH------CCCCCCcCcHHHHHHHH
Confidence 445688999999997 999994 999999999875333 356889999999998 677888 9999999987
Q ss_pred HH
Q 014101 126 AL 127 (430)
Q Consensus 126 ~~ 127 (430)
..
T Consensus 79 ~~ 80 (92)
T cd05025 79 AA 80 (92)
T ss_pred HH
Confidence 64
No 276
>PRK00049 elongation factor Tu; Reviewed
Probab=98.91 E-value=2e-08 Score=101.11 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=77.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCC------CC------c--CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFS------DN------Y--TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~------~~------~--~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
++.++|+++|..++|||||++++++.... .. . ....|.+.......+..+...+.++||+|+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56689999999999999999999863110 00 0 0012233333334443334567789999998776
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEE-EEEeCCCCCC
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCL-IVAAKDDLDS 409 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pii-lVgnK~Dl~~ 409 (430)
... ...+..+|++++|+|++..-. ....+++..+... ++|.+ ++.||+|+.+
T Consensus 90 ~~~--~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~------g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNM--ITGAAQMDGAILVVSAADGPM-PQTREHILLARQV------GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHH--HhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc------CCCEEEEEEeecCCcc
Confidence 554 456789999999999976322 2233344444433 57865 6899999975
No 277
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=1.3e-08 Score=96.87 Aligned_cols=121 Identities=22% Similarity=0.132 Sum_probs=83.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH----HHhh-hcccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKL-LSNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~----~~~~-~~~~~~~~~ad 361 (430)
-|-+||-||+|||||++.+...+.....+|.++.......+.+. ....+.+-|.+|--. -..+ ..-...+.+|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 57899999999999999999998877766766655555555553 445566777776210 0000 00124668899
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 362 IAVFVHDSSDES---SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 362 ~vilv~D~t~~~---S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+++.|+|++..+ ..+.......++..+.... .+.|.+||+||+|+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L-~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL-AEKPRIVVLNKIDLPL 289 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh-ccCceEEEEeccCCCc
Confidence 999999998644 3566666666666664322 2789999999999655
No 278
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.91 E-value=1.9e-08 Score=102.52 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=88.9
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCC--C-------------------------CCc--CCCccceEEEEEEEcCCC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPF--S-------------------------DNY--TPTTDERYAVNVVDQPGG 332 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~--~-------------------------~~~--~~t~~~~~~~~~v~~~~~ 332 (430)
.++.++|+++|..++|||||+-+++..-- . ... ....|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35668999999999999999998863210 0 000 001122233333334434
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHH-------HHHHHHHHHHhcCCCCCCCC-cEEEEEeC
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWK-------RATELLVEVASYGEDTGFEV-PCLIVAAK 404 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~-------~~~~~l~~l~~~~~~~~~~~-PiilVgnK 404 (430)
...+.++|++|++.|.... ...+..+|++++|+|+++ .+|+ ...+.+..+... ++ ++|+++||
T Consensus 84 ~~~i~liDtPGh~df~~~~--~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~------gi~~iIV~vNK 154 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNM--ITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL------GVKQMICCCNK 154 (447)
T ss_pred CEEEEEEECCCHHHHHHHH--HhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc------CCCcEEEEEEc
Confidence 5678899999999998766 577899999999999986 3332 344443333332 46 47889999
Q ss_pred CCCCCccC-------cHHHHHHHHHHhCC
Q 014101 405 DDLDSFAM-------AIQDSTRVFTFLVM 426 (430)
Q Consensus 405 ~Dl~~~~v-------~~~~~~~~~~~~g~ 426 (430)
+|+.+... ..++++.++++.|+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 99873211 25677888887774
No 279
>PLN03127 Elongation factor Tu; Provisional
Probab=98.90 E-value=2.5e-08 Score=101.65 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=75.7
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCC------CCCCCc--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGR------PFSDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~------~~~~~~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
.++.++|+++|..++|||||++++.+. .....+ ....|.+.......+..+...+.++|++|+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 466789999999999999999999622 111010 001222233333444434456789999999776
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCC
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDS 409 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~ 409 (430)
.... ...+..+|++++|+|+++.-. .+..+.+..+... ++| +|+|.||+|+.+
T Consensus 138 ~~~~--~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~------gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNM--ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV------GVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc------CCCeEEEEEEeeccCC
Confidence 5543 344567999999999875321 2223333333332 578 578999999975
No 280
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.88 E-value=9e-09 Score=81.96 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhcC-CC-CCccCHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCDH-DR-DGALSDAELNDFQVKC----FNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~-dG~is~~El~~~~~~~----~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+.....|+++|..||. |+ ||.|+.+||..+++.. +|..++++++..+++.+ |.+++| |+|++|+.++
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~------D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDL------DQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHh------CCCCCCcCcHHHHHHHH
Confidence 3457789999999997 98 6999999999998753 35677899999999998 677888 9999999887
Q ss_pred H
Q 014101 126 A 126 (430)
Q Consensus 126 ~ 126 (430)
.
T Consensus 78 ~ 78 (94)
T cd05031 78 A 78 (94)
T ss_pred H
Confidence 5
No 281
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.88 E-value=1.1e-08 Score=80.07 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhcC-CC-CCccCHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 53 PRCVRALKRIFILCDH-DR-DGALSDAELNDFQVK--CFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~-dG~is~~El~~~~~~--~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
++.+..|-++|+.||. || +|+|+.+||..++.+ .+|..++++++.++++.+ |.+++| |+|+||+.++.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~------D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDL------DRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh------cCCCCCCCcHHHHHHHHH
Confidence 5678899999999999 88 999999999999864 368889999999999998 678888 99999998865
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.87 E-value=3.3e-08 Score=94.60 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=70.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhh-----cccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL-----SNKD 355 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~-----~~~~ 355 (430)
..+.++|+++|.+||||||++|++++......+. .+.+........... ...+.++||+|-....... ....
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3567899999999999999999999887543321 122222111222233 3568899999954321110 0011
Q ss_pred cc--ccccEEEEEEECCCh--hhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 356 SL--AACDIAVFVHDSSDE--SSW-KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 356 ~~--~~ad~vilv~D~t~~--~S~-~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++ ...|++++|..++.. ... ..+.+.+..+.... --.++|||.|++|..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~----iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD----IWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh----hhccEEEEEECCccCC
Confidence 11 268999999665432 212 22233333332111 1357899999999764
No 283
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.87 E-value=5.8e-09 Score=89.86 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 55 CVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 55 ~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
...+|+++|++||+|+||+|+..||..++.. +|..+++++++.+++.+ +.+++| |+|++|..++.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~-lge~~~deev~~ll~~~------d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKS-LGERLSDEEVEKLLKEY------DEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHh-hcccCCHHHHHHHHHhc------CCCCCceEeHHHHHHHHh
Confidence 3579999999999999999999999999775 69999999999999999 678899 99999998753
No 284
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.87 E-value=2.1e-08 Score=94.64 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=64.8
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhh-----hcccccccc
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL-----LSNKDSLAA 359 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~-----~~~~~~~~~ 359 (430)
-.+|++||.|+||||||++.+++.+......+.++.......+.+.| ..++++|.+|--.-.+. .+.....++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 35899999999999999999999988777767666666656667664 56778898863110000 012467799
Q ss_pred ccEEEEEEECCChhh
Q 014101 360 CDIAVFVHDSSDESS 374 (430)
Q Consensus 360 ad~vilv~D~t~~~S 374 (430)
||+|++|.|+....+
T Consensus 141 ADlIiiVld~~~~~~ 155 (365)
T COG1163 141 ADLIIIVLDVFEDPH 155 (365)
T ss_pred CCEEEEEEecCCChh
Confidence 999999999986544
No 285
>PRK12739 elongation factor G; Reviewed
Probab=98.85 E-value=4.4e-08 Score=105.48 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=84.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCC--CCC---C-------------cCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRP--FSD---N-------------YTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~--~~~---~-------------~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
....+|+|+|..++|||||+++++... ... . ....++.+.....+.+. ...+.++||+|+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 345689999999999999999996421 100 0 01223333333445554 456788999999
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHh
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 424 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~ 424 (430)
..+.... ...++.+|++++|+|+++.-.-.. ...+..+... ++|+++++||+|+.... ......++.+.+
T Consensus 84 ~~f~~e~--~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~------~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l 153 (691)
T PRK12739 84 VDFTIEV--ERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY------GVPRIVFVNKMDRIGAD-FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHH--HHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 7776654 677899999999999986433222 2333444333 58999999999998643 223334444444
Q ss_pred C
Q 014101 425 V 425 (430)
Q Consensus 425 g 425 (430)
+
T Consensus 154 ~ 154 (691)
T PRK12739 154 G 154 (691)
T ss_pred C
Confidence 3
No 286
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.84 E-value=3.7e-08 Score=101.22 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=72.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-------------C--------------------CCccceEEEEEEEc
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------T--------------------PTTDERYAVNVVDQ 329 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------------~--------------------~t~~~~~~~~~v~~ 329 (430)
+..++|+++|..++|||||+.+++...-.... . ..++.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 56699999999999999999999754321110 0 01112222223333
Q ss_pred CCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 330 PGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 330 ~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+...+.++||+|++.|.... ...+..+|++++|+|++..-.-.....+ ..+.... ..|+|+|+||+|+.+
T Consensus 105 --~~~~i~~iDTPGh~~f~~~~--~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg-----~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 --EKRKFIIADTPGHEQYTRNM--ATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG-----IKHLVVAVNKMDLVD 174 (474)
T ss_pred --CCcEEEEEECCCcHHHHHHH--HHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC-----CCceEEEEEeecccc
Confidence 34567899999998876543 3446899999999999753211111111 1111111 247899999999975
No 287
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.83 E-value=1.2e-08 Score=110.17 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=77.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC---------------CCCCC---cCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR---------------PFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~---------------~~~~~---~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
....+|+++|..++|||||+++++.. .+... ...|+........+...+....+.+|||+|+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999742 11111 0112222222222334555678899999999
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..|.... ...++.+|++++|+|+.+.-..+. ...+..+... ++|+++|+||+|+..
T Consensus 97 ~~f~~~~--~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~~------~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDV--TRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALKE------NVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHH--HHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHHc------CCCEEEEEEChhccc
Confidence 8876555 578899999999999876322221 1222222222 578899999999864
No 288
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.83 E-value=3.1e-08 Score=105.78 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-----------C----------------------CccceEEEEEEE
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-----------P----------------------TTDERYAVNVVD 328 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-----------~----------------------t~~~~~~~~~v~ 328 (430)
.++.++|+++|.+++|||||+++++...-..... + .++.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3556899999999999999999998643221100 0 011112222333
Q ss_pred cCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 329 QPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 329 ~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
.+ ...+.++||+|++.|.... ...+..+|++++|+|++.... ....+.+..+.... ..|+++|+||+|+.
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~--~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~~-----~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNM--VTGASTADLAIILVDARKGVL-TQTRRHSFIASLLG-----IRHVVLAVNKMDLV 170 (632)
T ss_pred cC--CceEEEEECCChHHHHHHH--HHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHhC-----CCeEEEEEEecccc
Confidence 33 3456789999998876543 345789999999999975321 11112222222221 35789999999997
Q ss_pred C
Q 014101 409 S 409 (430)
Q Consensus 409 ~ 409 (430)
+
T Consensus 171 ~ 171 (632)
T PRK05506 171 D 171 (632)
T ss_pred c
Confidence 4
No 289
>PTZ00183 centrin; Provisional
Probab=98.83 E-value=4.1e-08 Score=85.57 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=80.4
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCchh
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLET 136 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~~ 136 (430)
.+..+|..+|.|++|.|+.+|+..++..........+++..+++.+ |.+++| |+.+||..++...
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~------D~~~~G~i~~~e~~~~l~~~-------- 119 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLF------DDDKTGKISLKNLKRVAKEL-------- 119 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHh------CCCCCCcCcHHHHHHHHHHh--------
Confidence 5889999999999999999999887665444555677888888888 678888 9999999875421
Q ss_pred HHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCC
Q 014101 137 TWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP 208 (430)
Q Consensus 137 ~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~ 208 (430)
+ + .++ .+.+..+|..||.|++|.|+.+|+..++...|
T Consensus 120 --------~------------~------------~l~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 120 --------G------------E------------TIT---DEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred --------C------------C------------CCC---HHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 0 0 011 23467899999999999999999999997644
No 290
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=2.2e-08 Score=89.35 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCch
Q 014101 57 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLE 135 (430)
Q Consensus 57 ~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~ 135 (430)
.-..++|+.||.|+||.|+..|+-.++-.... ...++-+...++.+ |.+++| |+.+|++.++.........
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~ly------D~dgdG~It~~Eml~iv~~i~~m~~~- 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLY------DLDGDGYITKEEMLKIVQAIYQMTGS- 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheee------cCCCCceEcHHHHHHHHHHHHHHccc-
Confidence 35578999999999999999997666544332 23556677778888 789999 9999999987643321111
Q ss_pred hHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 136 TTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 136 ~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
...+ +.+...++.....|+.+|.|+||.||.+|+......
T Consensus 136 --------------------------~~~~-----~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 136 --------------------------KALP-----EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred --------------------------ccCC-----cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 0000 111223445677999999999999999999987765
No 291
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.80 E-value=5e-08 Score=98.57 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCc---------------------------------CCCccceEEEEEEEcCCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNY---------------------------------TPTTDERYAVNVVDQPGG 332 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~---------------------------------~~t~~~~~~~~~v~~~~~ 332 (430)
++|+++|..++|||||+.+++...-.... ...++.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 48999999999999999999643211100 0011122222333333
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
...+.++|++|++.|.... ...+..+|++++|+|++..-.- +..+.+..+.... ..++++|+||+|+.+
T Consensus 79 ~~~~~liDtPGh~~f~~~~--~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~~-----~~~iivviNK~D~~~ 147 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNM--ATGASTADLAVLLVDARKGVLE-QTRRHSYIASLLG-----IRHVVLAVNKMDLVD 147 (406)
T ss_pred CeEEEEEeCCCHHHHHHHH--HHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHcC-----CCcEEEEEEeccccc
Confidence 4567899999998886544 3567899999999998753211 1111122222221 246899999999975
No 292
>PRK00007 elongation factor G; Reviewed
Probab=98.77 E-value=7.2e-08 Score=103.82 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=83.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhC--CCCCC---C-------------cCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLG--RPFSD---N-------------YTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~--~~~~~---~-------------~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
....+|+|+|.+++|||||+++++. +.... . ....++.+.....+.+. ...+.++||+|+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence 3456999999999999999999973 11110 0 01122233333344444 467888999998
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHh
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 424 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~ 424 (430)
..|..-. ...++.+|++++|+|+...-.-+. ...+..+... ++|+|+++||+|+.... .....+++.+.+
T Consensus 86 ~~f~~ev--~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~------~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l 155 (693)
T PRK00007 86 VDFTIEV--ERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY------KVPRIAFVNKMDRTGAD-FYRVVEQIKDRL 155 (693)
T ss_pred HHHHHHH--HHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 7765533 567788999999999875432222 2333334433 58999999999998643 233444554444
Q ss_pred CC
Q 014101 425 VM 426 (430)
Q Consensus 425 g~ 426 (430)
+.
T Consensus 156 ~~ 157 (693)
T PRK00007 156 GA 157 (693)
T ss_pred CC
Confidence 43
No 293
>PTZ00258 GTP-binding protein; Provisional
Probab=98.77 E-value=1e-07 Score=94.63 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=60.2
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCe---------------EEEEEEeCCChhH-
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEEA- 346 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~d~~G~e~- 346 (430)
...++|.+||.||||||||+|++++........|..+.+.....+.+++.. ..+.++|++|-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456799999999999999999998887655544655555555555554322 2367899999321
Q ss_pred ---HHhhh-ccccccccccEEEEEEECC
Q 014101 347 ---VAKLL-SNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 347 ---~~~~~-~~~~~~~~ad~vilv~D~t 370 (430)
-..+. .....++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 01110 1135678999999999973
No 294
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.76 E-value=4.5e-09 Score=82.38 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhc-CCCCC-CCCHHHHHHhhcc-----CCCCC--CCCCcccccccccCCcccchhhHHhhhh
Q 014101 175 EAIDFLKGIFELFD-ADDDN-SLRPIEVEDLFST-----APECP--WDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 175 ~~~~~l~~~F~~fD-~d~dG-~is~~el~~~~~~-----~~~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+...|+++|+.|| +|||| .|+.+||+.+++. .+..+ .....+++.+|.|+||.|+|++|+....
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45567999999998 89999 5999999999987 44332 1235677899999999999999987743
No 295
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.74 E-value=5e-08 Score=76.58 Aligned_cols=69 Identities=25% Similarity=0.398 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFIL-CDHDRDG-ALSDAELNDFQVKCF----NSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~-~D~d~dG-~is~~El~~~~~~~~----g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+..+..|..+|+. +|+|+|| .||.+||+.++.+-+ +...++.+++.+++.+ |.|++| |+|+||+.++
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~------D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKL------DLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHc------CCCCCCcCcHHHHHHHH
Confidence 5678899999999 8899987 999999999987754 4456788999999988 678889 9999999987
Q ss_pred HH
Q 014101 126 AL 127 (430)
Q Consensus 126 ~~ 127 (430)
..
T Consensus 79 ~~ 80 (89)
T cd05023 79 GG 80 (89)
T ss_pred HH
Confidence 53
No 296
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.74 E-value=6.7e-08 Score=84.02 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHH
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQ----PSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIE 130 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~----~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~ 130 (430)
..+++.++..+|.|+||.|+.+|+..++.+....... .+++.+.++.+ |.+++| |+.+|+..++...-.
T Consensus 43 ~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~f------D~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 43 EEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVF------DKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHH------ccCCCCcCcHHHHHHHHHHhCC
Confidence 3488899999999999999999999998776544433 44888888888 788999 999999988653211
Q ss_pred cCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 131 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 131 ~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
+ ++ .+.+..+++.+|.||||.|+.+|+..+|..
T Consensus 117 ~----------------------------------------~~---~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 117 K----------------------------------------LT---DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred c----------------------------------------CC---HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 0 11 234778999999999999999999999864
No 297
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.74 E-value=6.6e-08 Score=86.11 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=78.7
Q ss_pred cCCccHHH-------HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHH
Q 014101 48 SQALKPRC-------VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLA 119 (430)
Q Consensus 48 ~~~lt~~~-------~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~ 119 (430)
.+.+...+ ++..+.+|+.||+|+.|.|+..||+.++.. +|..++++-++.|++.++ ..++| |.|+
T Consensus 108 ~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~-~Gy~Lspq~~~~lv~kyd------~~~~g~i~FD 180 (221)
T KOG0037|consen 108 SGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQ-LGYRLSPQFYNLLVRKYD------RFGGGRIDFD 180 (221)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHH-cCcCCCHHHHHHHHHHhc------cccCCceeHH
Confidence 56666665 566789999999999999999999999765 799999999999999984 23366 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCC--H
Q 014101 120 GFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLR--P 197 (430)
Q Consensus 120 eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is--~ 197 (430)
+|++.... ...|.++|+.+|.+.+|.|+ .
T Consensus 181 ~FI~ccv~-------------------------------------------------L~~lt~~Fr~~D~~q~G~i~~~y 211 (221)
T KOG0037|consen 181 DFIQCCVV-------------------------------------------------LQRLTEAFRRRDTAQQGSITISY 211 (221)
T ss_pred HHHHHHHH-------------------------------------------------HHHHHHHHHHhccccceeEEEeH
Confidence 99987421 12378999999999999754 4
Q ss_pred HHHH
Q 014101 198 IEVE 201 (430)
Q Consensus 198 ~el~ 201 (430)
+++-
T Consensus 212 ~dfl 215 (221)
T KOG0037|consen 212 DDFL 215 (221)
T ss_pred HHHH
Confidence 5543
No 298
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.74 E-value=1.7e-09 Score=80.00 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhccCCCC--CCCC----CcccccccccCCcccchhhHHhh
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFSTAPEC--PWDE----APYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~~~~~~--~~~~----~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
|+++|+.||+|+||+|+.+||+.++...... +... ..+.+.+|+|+||.|+++||+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 6799999999999999999999999875432 1111 23468899999999999999875
No 299
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2e-07 Score=93.88 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=87.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC-CeEEEEEEeCCChhHHHhhhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vi 364 (430)
.=|.++|.---|||||+..+-+........-.++-......+.++. ....+.++||+|++.|..+. ..-..-+|+++
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR--aRGa~vtDIaI 83 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR--ARGASVTDIAI 83 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH--hcCCccccEEE
Confidence 3589999999999999999999888776655666666666777652 24678899999999999997 55567899999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 365 FVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 365 lv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
||++++| |++.+.+. ..... ++|++++.||+|+++
T Consensus 84 LVVa~dDGv~pQTiEAI~----hak~a------~vP~iVAiNKiDk~~ 121 (509)
T COG0532 84 LVVAADDGVMPQTIEAIN----HAKAA------GVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEccCCcchhHHHHHH----HHHHC------CCCEEEEEecccCCC
Confidence 9999997 34444332 22222 799999999999995
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.71 E-value=3.7e-07 Score=84.81 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=69.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
..+...|+++|.+|+|||||++.+.+..-........|. + .+... ....+.++|++|.- ..+. ...+.+|
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~~-~~~~i~~vDtPg~~--~~~l---~~ak~aD 105 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVTG-KKRRLTFIECPNDI--NAMI---DIAKVAD 105 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEec-CCceEEEEeCCchH--HHHH---HHHHhcC
Confidence 355678999999999999999999875322111112221 1 11112 34567789999863 2232 4468899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEeCCCCCC
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAAKDDLDS 409 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pi-ilVgnK~Dl~~ 409 (430)
++++|+|++...... ...++..+... +.|. ++|.||+|+.+
T Consensus 106 vVllviDa~~~~~~~-~~~i~~~l~~~------g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 106 LVLLLIDASFGFEME-TFEFLNILQVH------GFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEEEecCcCCCHH-HHHHHHHHHHc------CCCeEEEEEeccccCC
Confidence 999999997543222 12333334333 4674 55999999975
No 301
>PRK12740 elongation factor G; Reviewed
Probab=98.70 E-value=1.2e-07 Score=102.02 Aligned_cols=124 Identities=17% Similarity=0.066 Sum_probs=80.9
Q ss_pred eCCCCCCHHHHHHHHhCCCCCCCc------------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhc
Q 014101 291 FGPKKAGKSVLLNSFLGRPFSDNY------------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS 352 (430)
Q Consensus 291 vG~~~vGKSSLi~~l~~~~~~~~~------------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~ 352 (430)
+|..++|||||+++++...-.... ...++.......+.+. ...+.+|||+|+..+....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~- 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEV- 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHH-
Confidence 699999999999999533211000 1122223333344444 4678899999998776655
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 353 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 353 ~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
...++.+|++++|+|+++..+...... +..+... ++|+++|+||+|+.... .....+++.+.++.
T Consensus 78 -~~~l~~aD~vllvvd~~~~~~~~~~~~-~~~~~~~------~~p~iiv~NK~D~~~~~-~~~~~~~l~~~l~~ 142 (668)
T PRK12740 78 -ERALRVLDGAVVVVCAVGGVEPQTETV-WRQAEKY------GVPRIIFVNKMDRAGAD-FFRVLAQLQEKLGA 142 (668)
T ss_pred -HHHHHHhCeEEEEEeCCCCcCHHHHHH-HHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHHCC
Confidence 567889999999999988655544333 3333332 58999999999988633 23445555555554
No 302
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.70 E-value=9.2e-09 Score=82.26 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 171 ELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 171 ~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
.+|.+....++++|+.||+|++|.|+.+||+++|...+........+++.+|.+++|.|+|+||+..+...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 34566777899999999999999999999999997743222223457788999999999999999987755
No 303
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=4.6e-08 Score=70.95 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=54.5
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCC-C-cCHHhHHHHHHHH
Q 014101 61 RIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNER-G-LTLAGFLFLHALF 128 (430)
Q Consensus 61 ~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~-g-i~~~eFl~~~~~~ 128 (430)
.+|.+||+++.|.+...+|..+|+.+.+..+++++++.+.+.++ -++. | |+|++|+..|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elD------P~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELD------PEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhC------CCCCCceEeHHHHHHHHHHh
Confidence 47999999999999999999999998776889999999999994 4444 7 9999999998753
No 304
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.68 E-value=1.4e-08 Score=80.63 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhc-CCCCCC-CCHHHHHHhhcc-CCC----CC--CCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 174 NEAIDFLKGIFELFD-ADDDNS-LRPIEVEDLFST-APE----CP--WDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 174 ~~~~~~l~~~F~~fD-~d~dG~-is~~el~~~~~~-~~~----~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
+.+...++++|..|| +||||. ||.+||++++.. .+. .+ .....+++.+|.|+||.|+|+||+....-.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345667899999999 899995 999999999965 221 11 123458889999999999999998875433
No 305
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.66 E-value=2.8e-07 Score=94.07 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=75.1
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCC--CCC-------------------------Cc--CCCccceEEEEEEEcCCCe
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRP--FSD-------------------------NY--TPTTDERYAVNVVDQPGGT 333 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~--~~~-------------------------~~--~~t~~~~~~~~~v~~~~~~ 333 (430)
++.++|+++|..++|||||+.+++..- ... .. ....+.+.......+..+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 566899999999999999999997421 100 00 0011222222223333345
Q ss_pred EEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChh---hH---HHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCC
Q 014101 334 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW---KRATELLVEVASYGEDTGFEVP-CLIVAAKDD 406 (430)
Q Consensus 334 ~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~---S~---~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~D 406 (430)
..+.++|++|+..|.... ...+..+|++++|+|++... .| .+..+.+..+... ++| +|++.||+|
T Consensus 85 ~~i~lIDtPGh~~f~~~~--~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~------gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNM--ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL------GVKQMIVCINKMD 156 (446)
T ss_pred eEEEEEECCChHHHHHHH--HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc------CCCeEEEEEEccc
Confidence 677899999998887655 46678999999999998631 11 2333333334333 456 679999999
Q ss_pred CC
Q 014101 407 LD 408 (430)
Q Consensus 407 l~ 408 (430)
+.
T Consensus 157 ~~ 158 (446)
T PTZ00141 157 DK 158 (446)
T ss_pred cc
Confidence 54
No 306
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.65 E-value=1.1e-07 Score=70.22 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 59 LKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 59 l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
++++|..+|+|+||.|+.+||..+++.. |. +.+++..+++.+ |.+++| |+|++|+.++..
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~-g~--~~~~~~~i~~~~------d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKS-GL--PRSVLAQIWDLA------DTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHc-CC--CHHHHHHHHHHh------cCCCCCcCCHHHHHHHHHH
Confidence 3689999999999999999999998764 53 788899999988 567778 999999998753
No 307
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.4e-07 Score=90.34 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=89.2
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
...-|.|+|.-.-|||||+..|.+........-.++-......+.++.| ..+.++||+|+..|..+. ..-.+-+|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMR--aRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMR--ARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHH--hccCccccEE
Confidence 3456899999999999999999999887766556666666677888844 778899999999999998 5666788999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 364 VFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 364 ilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++|+.+.| +++.+.+.. ... .++|+|+..||+|.+.
T Consensus 229 VLVVAadDGVmpQT~EaIkh----Ak~------A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLEAIKH----AKS------ANVPIVVAINKIDKPG 267 (683)
T ss_pred EEEEEccCCccHhHHHHHHH----HHh------cCCCEEEEEeccCCCC
Confidence 99999987 344443332 222 2799999999999876
No 308
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=6.6e-08 Score=86.94 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=81.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh-hh--cccccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LL--SNKDSLAACD 361 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~-~~--~~~~~~~~ad 361 (430)
-||+++|.+|+||||+-..+..+..+- +..++.+.++....+.+- |...+.+||..|++.+-. .. +....+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 389999999999999877666443221 222444445544455555 456778999999974433 22 3356789999
Q ss_pred EEEEEEECCChhhHH---HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 362 IAVFVHDSSDESSWK---RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 362 ~vilv~D~t~~~S~~---~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
++++|||++..+--. .-+.-++.+.++. |...+.+..+|+|+...
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S----P~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS----PEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC----CcceEEEEEeechhccc
Confidence 999999998764433 3334445555554 36778999999999774
No 309
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.62 E-value=1.6e-08 Score=74.76 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhhhhhh
Q 014101 181 KGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMT 242 (430)
Q Consensus 181 ~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~ 242 (430)
+++|+.||.|++|.|+.+|+..+|...+........+.+.+|.+++|.|+|++|+..|.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 47999999999999999999999976543223334577899999999999999999988764
No 310
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.61 E-value=6.1e-07 Score=82.58 Aligned_cols=137 Identities=14% Similarity=0.058 Sum_probs=74.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC--CCccceEEEEEEEcCCCeEEEEEEeCCCh-------h-HHHhhhcc-c
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT--PTTDERYAVNVVDQPGGTKKTVVLREIPE-------E-AVAKLLSN-K 354 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~--~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-------e-~~~~~~~~-~ 354 (430)
++|+|+|.+|+||||++|.+++........ .+.+.........+.| ..+.++||||- + ....+... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 489999999999999999999988654431 1222333333445553 55678999982 1 11111100 1
Q ss_pred cccccccEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCc--------HHHHHHHHHHhC
Q 014101 355 DSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA--------IQDSTRVFTFLV 425 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~-S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~--------~~~~~~~~~~~g 425 (430)
......|++++|+.+.... .-..+.+++..+..... -.-++||.|..|....... ....+++.+..|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~----~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI----WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG----GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH----HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 2235689999999988321 22234445555443221 1347788888876554321 123455666665
Q ss_pred Ccc
Q 014101 426 MVL 428 (430)
Q Consensus 426 ~~~ 428 (430)
-.|
T Consensus 155 ~R~ 157 (212)
T PF04548_consen 155 GRY 157 (212)
T ss_dssp TCE
T ss_pred CEE
Confidence 544
No 311
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=88.44 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=88.6
Q ss_pred hhhhccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh---------hHH
Q 014101 277 KKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAV 347 (430)
Q Consensus 277 ~~~~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~---------e~~ 347 (430)
+.+....+..-|.|+|.+|+|||||+++++.....+...-..+.+...+...++. ....++.||.|- ..|
T Consensus 170 r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 170 RVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred hhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHH
Confidence 3444555667899999999999999999997666555544555555556677774 445667899883 233
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCC-CCCCcEEEEEeCCCCCCc
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDT-GFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~-~~~~PiilVgnK~Dl~~~ 410 (430)
... ......+|+++-|.|+++|+--.+....+.-+....-.. .....++=|-||+|....
T Consensus 249 ~AT---LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 249 QAT---LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHH---HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 332 356678999999999999987666666666665543210 001226778899998664
No 312
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=94.30 Aligned_cols=125 Identities=16% Similarity=0.034 Sum_probs=84.6
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh-----hHHHhh-hccc
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKL-LSNK 354 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~-----e~~~~~-~~~~ 354 (430)
...+.-.++|+|.||||||||+|.++.......+.+.++....+..+.+. ...++++||+|- |.-+.+ ..+.
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHH
Confidence 34566789999999999999999999988877777777766666555544 677889999883 111111 0001
Q ss_pred ccc-ccccEEEEEEECCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 355 DSL-AACDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 355 ~~~-~~ad~vilv~D~t~~--~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
..+ .--.+|+++.|++.. -|..+-..++..+...- .+.|+|+|.||+|+....
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF----aNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF----ANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh----cCCceEEEeecccccCcc
Confidence 111 112578999999864 45555555555554432 268999999999997753
No 313
>PTZ00184 calmodulin; Provisional
Probab=98.61 E-value=4.1e-07 Score=78.21 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCch
Q 014101 57 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLE 135 (430)
Q Consensus 57 ~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~ 135 (430)
..++++|+.+|.|++|.|+.+|+..++..........+.+..+++.+ |.+++| |+.++|..++..
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~------D~~~~g~i~~~e~~~~l~~-------- 112 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF------DRDGNGFISAAELRHVMTN-------- 112 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhh------CCCCCCeEeHHHHHHHHHH--------
Confidence 36789999999999999999999988765444444566677777777 678889 999999877542
Q ss_pred hHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhc
Q 014101 136 TTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFS 205 (430)
Q Consensus 136 ~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~ 205 (430)
+|+ .++ .+.+..+|+.+|.|++|.|+.+|+..++.
T Consensus 113 --------~~~------------------------~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 113 --------LGE------------------------KLT---DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred --------HCC------------------------CCC---HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 110 011 23367899999999999999999988763
No 314
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.60 E-value=2.2e-07 Score=90.47 Aligned_cols=83 Identities=22% Similarity=0.080 Sum_probs=54.2
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEE---------------------cCC-CeEEEEEEeCCCh-
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVD---------------------QPG-GTKKTVVLREIPE- 344 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~---------------------~~~-~~~~~~i~d~~G~- 344 (430)
|+++|.+|||||||+|++++........|..+.+..+.... .++ ....+.+||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999999876433333322222211111 122 2356889999996
Q ss_pred ---hHHHhhh-ccccccccccEEEEEEECC
Q 014101 345 ---EAVAKLL-SNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 345 ---e~~~~~~-~~~~~~~~ad~vilv~D~t 370 (430)
+....+. .....+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3444332 0124589999999999997
No 315
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.56 E-value=3.9e-07 Score=91.37 Aligned_cols=85 Identities=20% Similarity=0.084 Sum_probs=55.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEE---------------------cCC-CeEEEEEEeCCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVD---------------------QPG-GTKKTVVLREIP 343 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~---------------------~~~-~~~~~~i~d~~G 343 (430)
++|.++|.||||||||+|++++........|..+.+.....+. .++ ....+.+||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998877543334333222222211 111 124577999999
Q ss_pred h----hHHHhhh-ccccccccccEEEEEEECC
Q 014101 344 E----EAVAKLL-SNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 344 ~----e~~~~~~-~~~~~~~~ad~vilv~D~t 370 (430)
- .....+. .....++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 2222222 0124489999999999997
No 316
>PTZ00416 elongation factor 2; Provisional
Probab=98.56 E-value=3.3e-07 Score=100.50 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=75.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-----------CC-----CccceEEEEEEEcC--------CCeEEEEE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------TP-----TTDERYAVNVVDQP--------GGTKKTVV 338 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----------~~-----t~~~~~~~~~v~~~--------~~~~~~~i 338 (430)
....+|+++|..++|||||+.+++...-.... .+ .++.......+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34559999999999999999999863211100 00 00111111122222 12456789
Q ss_pred EeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 339 LREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 339 ~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
+||+|+..|..-. ...++.+|++++|+|+++.-.-. ....+..+... ++|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~--~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEV--TAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQE------RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHH--HHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHc------CCCEEEEEEChhhh
Confidence 9999998876655 56789999999999988642222 22334444433 58999999999997
No 317
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.56 E-value=4.6e-08 Score=77.55 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhc-CCCCCC-CCHHHHHHhhcc-CCC----CC--CCCCcccccccccCCcccchhhHHhhhh
Q 014101 175 EAIDFLKGIFELFD-ADDDNS-LRPIEVEDLFST-APE----CP--WDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 175 ~~~~~l~~~F~~fD-~d~dG~-is~~el~~~~~~-~~~----~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+.+.|+++|+.|| +||+|+ |+.+||+.+|+. .+. .+ .....+++.+|.|++|.|+|++|+....
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45567999999997 999995 999999999974 221 11 1234577899999999999999988754
No 318
>PRK09866 hypothetical protein; Provisional
Probab=98.56 E-value=2.5e-06 Score=88.22 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=49.0
Q ss_pred EEEEEeCCChhH-----HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 335 KTVVLREIPEEA-----VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 335 ~~~i~d~~G~e~-----~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+.++||+|-.. +.... ...+..+|+|++|+|.++.-+... ....+.+.... .+.|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M--~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~----K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKML--NQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG----QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHHHH--HHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC----CCCCEEEEEEcccCCC
Confidence 346889999532 22222 346899999999999987533332 22334444332 1369999999999865
Q ss_pred cc-CcHHHHHHHH
Q 014101 410 FA-MAIQDSTRVF 421 (430)
Q Consensus 410 ~~-v~~~~~~~~~ 421 (430)
+. ...+...++.
T Consensus 304 reeddkE~Lle~V 316 (741)
T PRK09866 304 RNSDDADQVRALI 316 (741)
T ss_pred cccchHHHHHHHH
Confidence 32 2244455543
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.56 E-value=1.3e-06 Score=85.94 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=84.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC----CCCC------------CcCC-----CccceE-EEEEEEc---CCCeEEEE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR----PFSD------------NYTP-----TTDERY-AVNVVDQ---PGGTKKTV 337 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~----~~~~------------~~~~-----t~~~~~-~~~~v~~---~~~~~~~~ 337 (430)
...+-|.|+|+.++|||||+|+|.+. .... .+.+ |+.+-+ ..+.+++ ++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45589999999999999999999988 4431 1111 111112 0022222 33446777
Q ss_pred EEeCCChhHHHhhh---------------------------ccccccc-cccEEEEEE-ECC----ChhhHH-HHHHHHH
Q 014101 338 VLREIPEEAVAKLL---------------------------SNKDSLA-ACDIAVFVH-DSS----DESSWK-RATELLV 383 (430)
Q Consensus 338 i~d~~G~e~~~~~~---------------------------~~~~~~~-~ad~vilv~-D~t----~~~S~~-~~~~~l~ 383 (430)
++||+|-..-..+. -++..+. ++|+.++|. |.+ .++.+. .-.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 89998832111100 0234555 889999998 764 123333 3455777
Q ss_pred HHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCcc
Q 014101 384 EVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 384 ~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~ 428 (430)
++... ++|+++|.||+|-.... +.+.+.++.++++++.
T Consensus 175 eLk~~------~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpv 212 (492)
T TIGR02836 175 ELKEL------NKPFIILLNSTHPYHPE-TEALRQELEEKYDVPV 212 (492)
T ss_pred HHHhc------CCCEEEEEECcCCCCch-hHHHHHHHHHHhCCce
Confidence 77765 68999999999944322 4444567777777763
No 320
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.55 E-value=4.4e-07 Score=99.67 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=76.6
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc----------------CCCccceEEEEEEEc--------------CC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----------------TPTTDERYAVNVVDQ--------------PG 331 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~----------------~~t~~~~~~~~~v~~--------------~~ 331 (430)
..+..+|+|+|..++|||||+.+++...-.... ...++.......+.+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345669999999999999999999754321100 000111111111222 11
Q ss_pred CeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 332 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 332 ~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
....+.++||+|+..|.... ...++.+|++|+|+|++..-.... ...+..+... ++|+|++.||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~--~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEV--TAALRITDGALVVVDCIEGVCVQT-ETVLRQALGE------RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHH--HHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHC------CCCEEEEEECCccc
Confidence 24567799999998887765 567799999999999986433222 2233444433 68999999999998
No 321
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.54 E-value=3.9e-08 Score=78.31 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcC-CC-CCCCCHHHHHHhhcc-CC----CCC--CCCCcccccccccCCcccchhhHHhhhhhhhh
Q 014101 176 AIDFLKGIFELFDA-DD-DNSLRPIEVEDLFST-AP----ECP--WDEAPYKDAAEKTALGGLSLDGFLSEWALMTL 243 (430)
Q Consensus 176 ~~~~l~~~F~~fD~-d~-dG~is~~el~~~~~~-~~----~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~~ 243 (430)
+...|+++|+.||. || +|.|+.+||+.++.. .+ ..+ .....+++.+|.|++|.|+|++|++.+.-.+.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 45568999999997 98 699999999999874 21 121 12345778899999999999999988765543
No 322
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.54 E-value=9.9e-07 Score=84.46 Aligned_cols=138 Identities=11% Similarity=0.107 Sum_probs=73.7
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC--------CCccceEEEE--EEEcCCCeEEEEEEeCCCh----------
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT--------PTTDERYAVN--VVDQPGGTKKTVVLREIPE---------- 344 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~--------~t~~~~~~~~--~v~~~~~~~~~~i~d~~G~---------- 344 (430)
.++|+|+|.+|+|||||||.|++........ ...+...... .+.-.+....+.++||+|-
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 4799999999999999999999876544320 0111222222 2333444556779999981
Q ss_pred --------hHHHhhhcc-------ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 345 --------EAVAKLLSN-------KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 345 --------e~~~~~~~~-------~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
++|...... ...-...|+++++.+.+...--..-...++.+.. .+++|-|..|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-------~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-------RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-------TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-------cccEEeEEecccccC
Confidence 122222110 1111346899999998753211222235555543 578999999999876
Q ss_pred cc---CcHHHHHHHHHHhCCccc
Q 014101 410 FA---MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 410 ~~---v~~~~~~~~~~~~g~~~f 429 (430)
.. .-...+.+-.+++++.+|
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f 179 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIF 179 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-
T ss_pred HHHHHHHHHHHHHHHHHcCceee
Confidence 32 114444555566676655
No 323
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.53 E-value=4.7e-07 Score=87.90 Aligned_cols=147 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHH-HHcCC
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALF-IEKGR 133 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~-~~~~~ 133 (430)
...|.+.|+.+|.++.|+||...-..++..+.|..+.=. .+...+. ..+.+| +.|.+.+.....- +.+.-
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr---~L~~kla-----~~s~d~~v~Y~~~~~~l~~e~~~~ea 534 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWR---LLRPKLA-----NGSDDGKVEYKSTLDNLDTEVILEEA 534 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHH---Hhhhhcc-----CCCcCcceehHhHHHHhhhhhHHHHH
Confidence 457889999999999999999999999988877765532 2222221 234556 9888888764311 10000
Q ss_pred chhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCC---CC
Q 014101 134 LETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP---EC 210 (430)
Q Consensus 134 ~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~---~~ 210 (430)
+. .++..+. .-...|..+|+..|+|++|.||.+||+.+++... ..
T Consensus 535 ~~---slvetLY-----------------------------r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~ 582 (631)
T KOG0377|consen 535 GS---SLVETLY-----------------------------RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG 582 (631)
T ss_pred Hh---HHHHHHH-----------------------------hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC
Confidence 00 0000000 0112377899999999999999999999876521 11
Q ss_pred CCCCC---cccccccccCCcccchhhHHhhhhhhh
Q 014101 211 PWDEA---PYKDAAEKTALGGLSLDGFLSEWALMT 242 (430)
Q Consensus 211 ~~~~~---~~~~~~d~~~dg~i~~~ef~~~w~~~~ 242 (430)
+.+.. ++.+..|.|+||.|++.||+.++.+..
T Consensus 583 ~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 583 AISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred CcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 22222 344789999999999999999977653
No 324
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.51 E-value=4.3e-07 Score=74.73 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
.+.+.++..++.+|..+|+|+||.||.+||..+. ....+..+..+++.+ |.|++| ||++||....
T Consensus 41 ~~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~------D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 41 SLYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESC------DLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHH------CCCCCCCCCHHHHHHHH
Confidence 3467889999999999999999999999999774 234567788888888 788999 9999999874
No 325
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.51 E-value=6.1e-07 Score=79.05 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=40.6
Q ss_pred EEEEeCCChhH----HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 014101 336 TVVLREIPEEA----VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 405 (430)
Q Consensus 336 ~~i~d~~G~e~----~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~ 405 (430)
+.++|+||-.. ...+. ..++..+|++++|.++++.-+-.....+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~--~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~------~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEIT--EEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD------KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHH--HHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT------CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHH--HHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC------CCeEEEEEcCC
Confidence 46889988532 11233 56779999999999999865545555554444433 34489999984
No 326
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.50 E-value=7.2e-08 Score=75.70 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHH-hcCCCCC-CCCHHHHHHhhccC-C------CCCCCCCcccccccccCCcccchhhHHhhhh
Q 014101 175 EAIDFLKGIFEL-FDADDDN-SLRPIEVEDLFSTA-P------ECPWDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 175 ~~~~~l~~~F~~-fD~d~dG-~is~~el~~~~~~~-~------~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+..-|..+|.. +|+||+| +||.+||+.+++.. | ..+...+.+++.+|.|+||.|+|+||+....
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 455678999999 7899987 99999999999863 2 1111224577899999999999999997643
No 327
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.49 E-value=1.8e-06 Score=77.10 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred ccCCccHHHHHH---------HHHHHHhhcCCCCCc-cCHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhhhcCCccCCC
Q 014101 47 ESQALKPRCVRA---------LKRIFILCDHDRDGA-LSDAELNDFQVKCFNSPLQ-PSEIVGVKRVVQEKLREGVNERG 115 (430)
Q Consensus 47 ~~~~lt~~~~~~---------l~~~F~~~D~d~dG~-is~~El~~~~~~~~g~~~~-~~e~~~i~~~~~~~~~~d~~~~g 115 (430)
..+.+|.++... ..|+|+.||.+++|. |+.+|+-.++.. +-.+-. .+-+.-.++.+ |.+++|
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~-f~~~~~~~~Kl~faF~vY------D~~~~G 119 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSV-FSPKASKREKLRFAFRVY------DLDGDG 119 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhh-hcCCccHHHHHHHHHHHh------cCCCCC
Confidence 556666666543 468999999999999 999999887543 433333 33566677788 788999
Q ss_pred -cCHHhHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHH-HHHHHHHHHhcCCCCC
Q 014101 116 -LTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAI-DFLKGIFELFDADDDN 193 (430)
Q Consensus 116 -i~~~eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~l~~~F~~fD~d~dG 193 (430)
|+.+|+..++..++..+.. + +.+.. +-+...|..+|.|+||
T Consensus 120 ~I~reel~~iv~~~~~~~~~------------------------------------~-~~e~~~~i~d~t~~e~D~d~DG 162 (187)
T KOG0034|consen 120 FISREELKQILRMMVGENDD------------------------------------M-SDEQLEDIVDKTFEEADTDGDG 162 (187)
T ss_pred cCcHHHHHHHHHHHHccCCc------------------------------------c-hHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999987755421111 0 12222 3355699999999999
Q ss_pred CCCHHHHHHhhccCCC
Q 014101 194 SLRPIEVEDLFSTAPE 209 (430)
Q Consensus 194 ~is~~el~~~~~~~~~ 209 (430)
.||.+|+.+++...|.
T Consensus 163 ~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 163 KISFEEFCKVVEKQPD 178 (187)
T ss_pred cCcHHHHHHHHHcCcc
Confidence 9999999999976543
No 328
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.48 E-value=6.8e-07 Score=70.12 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhcCC--CCCccCHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 53 PRCVRALKRIFILCDHD--RDGALSDAELNDFQVKCFNSPLQ----PSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~d--~dG~is~~El~~~~~~~~g~~~~----~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
+..+..|.++|+.|+.. .+|.|+.+||+.++.+.+|..++ ++++..+++.+ |.+++| |+|++|+.++
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~------D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL------DTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc------CCCCCCcCcHHHHHHHH
Confidence 45678899999999976 48999999999998777777777 89999999998 678888 9999999987
Q ss_pred HH
Q 014101 126 AL 127 (430)
Q Consensus 126 ~~ 127 (430)
..
T Consensus 78 ~~ 79 (88)
T cd05030 78 IK 79 (88)
T ss_pred HH
Confidence 64
No 329
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.47 E-value=5.6e-08 Score=80.57 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=44.7
Q ss_pred HHHHHhcCCCCCCCCHHHHHHhhccCCCCC-------CCCCcccccccccCCcccchhhHHhh
Q 014101 182 GIFELFDADDDNSLRPIEVEDLFSTAPECP-------WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 182 ~~F~~fD~d~dG~is~~el~~~~~~~~~~~-------~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
=||+.||-|+|++|..++|...+....... .-++.+++++|.||||+|++++|-..
T Consensus 112 YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 112 YAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred heeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 399999999999999999999887642211 11235678999999999999999654
No 330
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.44 E-value=1.2e-07 Score=74.37 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcC-CC-CCCCCHHHHHHhhcc---CCCCC--CCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 175 EAIDFLKGIFELFDA-DD-DNSLRPIEVEDLFST---APECP--WDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~-d~-dG~is~~el~~~~~~---~~~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
.+...|.++|..||. || +|+|+.+||+++++. .+..+ .+...+++.+|.|++|.|+|+||+..+.-.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 455668899999998 88 999999999999963 22221 223457789999999999999998775543
No 331
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.43 E-value=1.6e-07 Score=77.32 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhh
Q 014101 175 EAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEW 238 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w 238 (430)
.-+..+.-+|..+|+|+||.||.+||..+. ..+.. .-...+++.+|.|+||.||++||....
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e-~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNE-HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchH-HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 344568889999999999999999999886 21111 111357889999999999999999875
No 332
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.42 E-value=2e-06 Score=84.58 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCe---------------EEEEEEeCCChhH----
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEEA---- 346 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~d~~G~e~---- 346 (430)
++|.+||.||||||||+|++++........|..+.+.....+.+++.. ..+.++|++|-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988544444555544444555555321 2477899998311
Q ss_pred HHhhh-ccccccccccEEEEEEECC
Q 014101 347 VAKLL-SNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 347 ~~~~~-~~~~~~~~ad~vilv~D~t 370 (430)
-..+. .....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11110 1134678999999999984
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.39 E-value=4e-06 Score=86.99 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEEcCCCeEEEEEEeCCChhHH-------Hhhhc-c
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-------AKLLS-N 353 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~-------~~~~~-~ 353 (430)
...++|+|+|.+||||||++|.+++........ ...+........... ...+.++||+|-... ..+.. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHH
Confidence 445799999999999999999999986443331 112222211222233 255788999994321 11110 0
Q ss_pred ccccc--cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 354 KDSLA--ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 354 ~~~~~--~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..++. .+|+||+|..++......+-..+++.+....+.. --.-+|||.|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-hHcCEEEEEeCCccCC
Confidence 12323 4799999988764333222223444443332211 0235789999999875
No 334
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.39 E-value=9.5e-07 Score=86.89 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=59.1
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCc---cceEEEEEEEcCCCeEEEEEEeCCChhH--HH--hhhcc
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT---DERYAVNVVDQPGGTKKTVVLREIPEEA--VA--KLLSN 353 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~---~~~~~~~~v~~~~~~~~~~i~d~~G~e~--~~--~~~~~ 353 (430)
..+..++|+|+|.+|+|||||||.+.|-.........+ .++.....+..+ ....+.+||.+|... +. ....
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~- 108 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLK- 108 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHH-
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHH-
Confidence 34566899999999999999999997643222111111 111222233334 233467899988522 11 0110
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDL 407 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l-~~l~~~~~~~~~~~PiilVgnK~Dl 407 (430)
...+...|.+|++.+ +.|....-++ ..+... +.|+.+|-+|+|.
T Consensus 109 ~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~------gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM------GKKFYFVRTKVDS 153 (376)
T ss_dssp HTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT------T-EEEEEE--HHH
T ss_pred HccccccCEEEEEeC----CCCchhhHHHHHHHHHc------CCcEEEEEecccc
Confidence 223567798888766 4566555544 444443 5899999999996
No 335
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.39 E-value=1.6e-06 Score=93.98 Aligned_cols=118 Identities=13% Similarity=0.024 Sum_probs=74.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-----------CC-----CccceEEEEE--EEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------TP-----TTDERYAVNV--VDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----------~~-----t~~~~~~~~~--v~~~~~~~~~~i~d~~G~ 344 (430)
.+.-+|+++|..++|||||+.+++...-.... .+ .++....... +...+....+.++||+|+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 34558999999999999999999743211100 00 0111111111 223434567789999999
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..|.... ...++.+|++++|+|+...-.-+ ....+...... +.|+|++.||+|+..
T Consensus 98 ~df~~~~--~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDV--TRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE------RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHH--HHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc------CCCeEEEEECchhhc
Confidence 8876655 56789999999999987642222 22233333332 467899999999864
No 336
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.38 E-value=1.5e-06 Score=82.58 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCe---------------EEEEEEeCCChh-------
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEE------- 345 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~d~~G~e------- 345 (430)
|.++|.||||||||+|++++........|..+.+.....+.+++.. ..+.++|++|-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988755544655555555556655321 247789999831
Q ss_pred HHHhhhccccccccccEEEEEEECC
Q 014101 346 AVAKLLSNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 346 ~~~~~~~~~~~~~~ad~vilv~D~t 370 (430)
...... ...++++|++++|+|+.
T Consensus 81 glg~~f--L~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKF--LSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHH--HHHHHhCCEEEEEEeCc
Confidence 111111 34568899999999873
No 337
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.37 E-value=5.7e-06 Score=77.16 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPF 310 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~ 310 (430)
...+++|+|+.|+||||+++.+.+..+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 345899999999999999999998763
No 338
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.37 E-value=2.7e-06 Score=86.75 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=73.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCC---CcCC--CccceEEEE-------------EEEcCCC------------
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD---NYTP--TTDERYAVN-------------VVDQPGG------------ 332 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~---~~~~--t~~~~~~~~-------------~v~~~~~------------ 332 (430)
.+.++|.++|.-..|||||+..|++..... .... |+...|... ....+.+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 456899999999999999999999753311 1101 111111100 0011110
Q ss_pred ----eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 333 ----TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 333 ----~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
...+.++|++|++.|.... ...+..+|++++|+|+++...-.+..+.+..+.... -.|+|+|.||+|+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m--~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg-----i~~iIVvlNKiDlv 184 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATM--LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK-----LKHIIILQNKIDLV 184 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHH--HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC-----CCcEEEEEeccccc
Confidence 1356789999998886544 355678999999999986311112223333222221 24689999999998
Q ss_pred Cc
Q 014101 409 SF 410 (430)
Q Consensus 409 ~~ 410 (430)
+.
T Consensus 185 ~~ 186 (460)
T PTZ00327 185 KE 186 (460)
T ss_pred CH
Confidence 63
No 339
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.36 E-value=2.8e-07 Score=72.38 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcC--CCCCCCCHHHHHHhhcc-CCCCC---CC---CCcccccccccCCcccchhhHHhhhhhh
Q 014101 175 EAIDFLKGIFELFDA--DDDNSLRPIEVEDLFST-APECP---WD---EAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~--d~dG~is~~el~~~~~~-~~~~~---~~---~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
..++.++++|..||+ |++|.|+.+||..++.. .+..+ .. ...++..+|.|++|.|+|++|+..+.-.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 345668999999999 89999999999999864 32211 11 2357788999999999999999887644
No 340
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.35 E-value=2e-06 Score=94.81 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCe----------------EEEEEEeCCChhHHHhhhcccccccc
Q 014101 296 AGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT----------------KKTVVLREIPEEAVAKLLSNKDSLAA 359 (430)
Q Consensus 296 vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~----------------~~~~i~d~~G~e~~~~~~~~~~~~~~ 359 (430)
++||||+.++.+...+....-.++-......++++... ..+.+|||+|++.|..+. ...+..
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr--~~g~~~ 549 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR--KRGGSL 549 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH--Hhhccc
Confidence 45999999999988866554444444444444443211 126899999999998876 556788
Q ss_pred ccEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 360 CDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 360 ad~vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+|++++|+|+++ ++++..+.. +... ++|+++|+||+|+..
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I~~----lk~~------~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAINI----LRQY------KTPFVVAANKIDLIP 592 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHHHH----HHHc------CCCEEEEEECCCCcc
Confidence 999999999986 455554432 2222 589999999999964
No 341
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.35 E-value=9.9e-07 Score=62.34 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=45.6
Q ss_pred CCCccCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 70 RDGALSDAELNDFQVKCFNSP-LQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 70 ~dG~is~~El~~~~~~~~g~~-~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
++|.|+.+||..++ ..+|.. ++++++..|+..+ |.+++| |+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~------D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREF------DTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHH------TTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhc------ccCCCCCCCHHHHHHHHH
Confidence 48999999999998 567988 9999999999999 788999 99999999865
No 342
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.6e-06 Score=82.33 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=78.0
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc------------------------CC-----CccceEEEEEEEcCCC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------------TP-----TTDERYAVNVVDQPGG 332 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~------------------------~~-----t~~~~~~~~~v~~~~~ 332 (430)
.++.++++++|...+|||||+-+|+-.--.... +. ..|.+..+....+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 356789999999999999999999743211000 01 1123333334444434
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChh---hH---HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW---KRATELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~---S~---~~~~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
...+.|+|++|+..|-.-. ..-...||+.|+|+|+.+.+ .| .+.++.+.-.+..+ -.-+|++.||+|
T Consensus 84 k~~~tIiDaPGHrdFvknm--ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD 156 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNM--ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMD 156 (428)
T ss_pred CceEEEeeCCchHHHHHHh--hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccc
Confidence 5568899999998877654 46678999999999998753 22 12233222222222 235899999999
Q ss_pred CCC
Q 014101 407 LDS 409 (430)
Q Consensus 407 l~~ 409 (430)
+.+
T Consensus 157 ~v~ 159 (428)
T COG5256 157 LVS 159 (428)
T ss_pred ccc
Confidence 987
No 343
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.35 E-value=5.1e-06 Score=78.45 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEc--CCCeEEEEEEeCCChhHHHhhhccccccc---
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQ--PGGTKKTVVLREIPEEAVAKLLSNKDSLA--- 358 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~--~~~~~~~~i~d~~G~e~~~~~~~~~~~~~--- 358 (430)
..-.|+|+|+.++||||||.++-+.+ .+.+..+..|..-.+.- .+...++.+|-.-|+-....+. ...+.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LL--k~al~ats 125 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLL--KFALPATS 125 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHH--hhcccccC
Confidence 44589999999999999999998876 33355566665444432 2234556677776664444443 11111
Q ss_pred cc-cEEEEEEECCChh-hHHHHHHHHH
Q 014101 359 AC-DIAVFVHDSSDES-SWKRATELLV 383 (430)
Q Consensus 359 ~a-d~vilv~D~t~~~-S~~~~~~~l~ 383 (430)
-+ ..||++.|+++|- -++.+..|..
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~ 152 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWAS 152 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHH
Confidence 12 4788999999983 3445555554
No 344
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=4.7e-06 Score=70.66 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=81.4
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCchh
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLET 136 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~~ 136 (430)
++.++-.-+|+++.|+|+.+++...+...+|..-+.+|+...++.+ |.+++| |++.+|..+++..-
T Consensus 70 ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~------D~D~~Gkis~~~lkrvakeLg------- 136 (172)
T KOG0028|consen 70 EILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLF------DDDKTGKISQRNLKRVAKELG------- 136 (172)
T ss_pred HHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcc------cccCCCCcCHHHHHHHHHHhC-------
Confidence 4455666789999999999999999887788777999999999887 678889 99999999875311
Q ss_pred HHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 137 TWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 137 ~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
| .+ .-+.|+++.+.+|+|+||.|+.+||-.+|+.
T Consensus 137 ---------------------e------------nl---tD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 137 ---------------------E------------NL---TDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred ---------------------c------------cc---cHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 1 11 1135889999999999999999999998864
No 345
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.34 E-value=4.6e-07 Score=55.13 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVK 85 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~ 85 (430)
+++++|+.||+|+||+||.+|+..++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999998764
No 346
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.34 E-value=3.7e-06 Score=82.00 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhc-----CC----------CCCHHHHHHHHHHHHhhhcCCccCCC-cCHH
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCF-----NS----------PLQPSEIVGVKRVVQEKLREGVNERG-LTLA 119 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~-----g~----------~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~ 119 (430)
.+.++=+|++||.||||-|+.+|+..++.-.. |. ....+--..+...+= |.++++ ++++
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFF-----G~rg~~kLs~d 306 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFF-----GKRGNGKLSID 306 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhh-----ccCCCccccHH
Confidence 35677899999999999999999998863221 11 111111112222221 567788 9999
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHH
Q 014101 120 GFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIE 199 (430)
Q Consensus 120 eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~e 199 (430)
+|+..+... .++-|+--|..||+..+|.|+..+
T Consensus 307 eF~~F~e~L-----------------------------------------------q~Eil~lEF~~~~~~~~g~Ise~D 339 (489)
T KOG2643|consen 307 EFLKFQENL-----------------------------------------------QEEILELEFERFDKGDSGAISEVD 339 (489)
T ss_pred HHHHHHHHH-----------------------------------------------HHHHHHHHHHHhCcccccccCHHH
Confidence 999876421 123356689999999999999999
Q ss_pred HHHhhccCCCCCCCC-----CcccccccccCCcccchhhHHhhhhhhhhcCHHHH
Q 014101 200 VEDLFSTAPECPWDE-----APYKDAAEKTALGGLSLDGFLSEWALMTLLDPARS 249 (430)
Q Consensus 200 l~~~~~~~~~~~~~~-----~~~~~~~d~~~dg~i~~~ef~~~w~~~~~~~~~~~ 249 (430)
+.+++=...+.+... ..+.++++-+ +-.||++||.+-..+...++....
T Consensus 340 FA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~ 393 (489)
T KOG2643|consen 340 FAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDI 393 (489)
T ss_pred HHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHH
Confidence 999775432222111 1233455555 445999999999999988887765
No 347
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=1.1e-06 Score=82.55 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=58.8
Q ss_pred hHHHhhhccccccccccEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc-CcHHHHHHHHH
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFT 422 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~-S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~-v~~~~~~~~~~ 422 (430)
+++..+. +.+++++|++++|||++++. |+..+.+|+..+... ++|+++|+||+||.+.+ +..+.+..++
T Consensus 24 eR~~~L~--r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~------~i~~vIV~NK~DL~~~~~~~~~~~~~~~- 94 (245)
T TIGR00157 24 ERKNELT--RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ------NIEPIIVLNKIDLLDDEDMEKEQLDIYR- 94 (245)
T ss_pred cccceEE--CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECcccCCCHHHHHHHHHHHH-
Confidence 4566666 67899999999999999887 899999999876542 68999999999997643 3335555554
Q ss_pred HhCCccc
Q 014101 423 FLVMVLY 429 (430)
Q Consensus 423 ~~g~~~f 429 (430)
++|+++|
T Consensus 95 ~~g~~v~ 101 (245)
T TIGR00157 95 NIGYQVL 101 (245)
T ss_pred HCCCeEE
Confidence 4777654
No 348
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.31 E-value=1e-06 Score=71.85 Aligned_cols=113 Identities=20% Similarity=0.211 Sum_probs=75.1
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChh-----HHHhhhcccccccccc
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE-----AVAKLLSNKDSLAACD 361 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e-----~~~~~~~~~~~~~~ad 361 (430)
|+++||..|+|||||.+.+.+.... +..|+.+++..+ -.+||+|.- -|..+. ....++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~---tt~~dad 66 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALI---TTLQDAD 66 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc-----------cccCCchhhhhhhHHHHHHH---HHhhccc
Confidence 7999999999999999999987653 334554444211 136777742 233333 4567899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 362 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 362 ~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
++++|-.++++.|.-.- .+.... ..|+|-|++|.|+.+ ....+..++|..+.|.
T Consensus 67 vi~~v~~and~~s~f~p-----~f~~~~-----~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa 120 (148)
T COG4917 67 VIIYVHAANDPESRFPP-----GFLDIG-----VKKVIGVVTKADLAE-DADISLVKRWLREAGA 120 (148)
T ss_pred eeeeeecccCccccCCc-----cccccc-----ccceEEEEecccccc-hHhHHHHHHHHHHcCC
Confidence 99999999987652110 011111 467999999999996 2334566777777665
No 349
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.29 E-value=3.7e-07 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
++++|+.||+||||+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 678999999999999999999999864
No 350
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.26 E-value=4.9e-06 Score=59.47 Aligned_cols=59 Identities=32% Similarity=0.440 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHH
Q 014101 59 LKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFL 124 (430)
Q Consensus 59 l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~ 124 (430)
++++|..+|.|++|.|+.+|+..++.. .|.+.+.+++..++..+ +.+++| |++++|+.+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~------~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKS-LGEGLSEEEIDEMIREV------DKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHh------CCCCCCeEeHHHHHHH
Confidence 678999999999999999999999765 57888999999999988 566778 999999875
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.20 E-value=4.3e-06 Score=73.06 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=40.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
..++|+++|.||||||||+|++.+....... ++.|.+.....+..++ .+.++||+|
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3478999999999999999999987765544 4444444444555542 256889988
No 352
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.19 E-value=2.2e-05 Score=72.79 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.0
Q ss_pred ccCceeEEEEeCCCCCCHHHHHHHHhCC
Q 014101 281 AERNVFQCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 281 ~~~~~~kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
..+.++-|+|+|-.|+|||||++|+...
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 3455678999999999999999999643
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.19 E-value=3.1e-05 Score=74.85 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=84.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc----------CCCccceEEEEEEEcCCCeEEEEEEeCCCh---------
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----------TPTTDERYAVNVVDQPGGTKKTVVLREIPE--------- 344 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~----------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~--------- 344 (430)
-.+.|+++|++|.|||||+|.+++....... .++.........+.-+|....+.++||+|-
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 3589999999999999999999988443321 123333333333444445566779999882
Q ss_pred ---------hHHHhhhcc--------ccccccccEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 345 ---------EAVAKLLSN--------KDSLAACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 345 ---------e~~~~~~~~--------~~~~~~ad~vilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
+++...... ...-...|++++....+. ..+..+ ...++.+.. .+.+|=|+-|+|
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~-------~vNlIPVI~KaD 173 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK-------RVNLIPVIAKAD 173 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc-------ccCeeeeeeccc
Confidence 222222200 111134688888888765 333322 234555543 467888899999
Q ss_pred CCCcc---CcHHHHHHHHHHhCCcccC
Q 014101 407 LDSFA---MAIQDSTRVFTFLVMVLYK 430 (430)
Q Consensus 407 l~~~~---v~~~~~~~~~~~~g~~~fk 430 (430)
....+ .-.+.+.+-...++++.|+
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 87642 2255666667777887763
No 354
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.17 E-value=2e-06 Score=53.33 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVK 85 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~ 85 (430)
+|+++|+.||+|+||+|+.+||..++++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4889999999999999999999999874
No 355
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.17 E-value=1.3e-05 Score=81.68 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=56.9
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC--CeEEEEEEeCCChhHHHhhhcccccccc---
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG--GTKKTVVLREIPEEAVAKLLSNKDSLAA--- 359 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--~~~~~~i~d~~G~e~~~~~~~~~~~~~~--- 359 (430)
.-.|+|+|..++||||||.+|.+.+ .+.++.+..|....+.-.+ ...++.+|-..|...+..++ ...+..
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LL--k~~lt~~~l 99 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLL--KFALTPENL 99 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHh--cccCCcccc
Confidence 3589999999999999999997653 3446777777655443221 22345677666655566665 222221
Q ss_pred -ccEEEEEEECCChhhH
Q 014101 360 -CDIAVFVHDSSDESSW 375 (430)
Q Consensus 360 -ad~vilv~D~t~~~S~ 375 (430)
--+|++|.|.+.|-.+
T Consensus 100 ~~t~vvIvlDlS~PW~~ 116 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNI 116 (472)
T ss_pred cceEEEEEecCCChHHH
Confidence 2478899999998654
No 356
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.16 E-value=5.4e-06 Score=81.73 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHhh---cCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 51 LKPRCVRALKRIFILC---DHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 51 lt~~~~~~l~~~F~~~---D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
+...+.++||.+|-.+ |+++.-+.+.+++-.....+++.+-...++..+...+. |..++| |+|+||.++-.
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~ia-----D~tKDglisf~eF~afe~ 101 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIA-----DQTKDGLISFQEFRAFES 101 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhh-----hhcccccccHHHHHHHHh
Confidence 4445566788887665 88899999999988776677777777777888887775 677889 99999998622
Q ss_pred HHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 127 LFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 127 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
.. +. | ++ ....+|..||+.|+|.+|.++++++|+.
T Consensus 102 ~l-----------------------C~----p----------------Da--l~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 102 VL-----------------------CA----P----------------DA--LFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hc-----------------------cC----c----------------hH--HHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 10 00 1 11 1356999999999999999999999986
Q ss_pred CC---CCC--CCCCcccccccccCCcccchhhHHhhhhhhhhc
Q 014101 207 AP---ECP--WDEAPYKDAAEKTALGGLSLDGFLSEWALMTLL 244 (430)
Q Consensus 207 ~~---~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~~~ 244 (430)
+. ..| |+.+-+...+--+..-.++|++|.....-....
T Consensus 137 t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E 179 (694)
T KOG0751|consen 137 TNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLE 179 (694)
T ss_pred cccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHH
Confidence 42 233 776534333444455578999988775544333
No 357
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.1e-05 Score=82.73 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=81.4
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCc---------------cceEEEEEE-----EcCCCeEEEEEEeC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT---------------DERYAVNVV-----DQPGGTKKTVVLRE 341 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~---------------~~~~~~~~v-----~~~~~~~~~~i~d~ 341 (430)
+....+|.++|.-+.|||+|+.-+.....+..+.++. |.......+ ...+....+.++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3456789999999999999999998776544321111 111211111 22344556679999
Q ss_pred CChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 342 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 342 ~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
+|+-.|..-. ...++-+|++++|+|+.+--++.. .+.++...+. +.|+++|.||.|+.
T Consensus 205 PGHVnF~DE~--ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~------~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDET--TASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN------RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHH--HHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc------cCcEEEEEehhHHH
Confidence 9998887765 577899999999999987655543 3344443332 68999999999974
No 358
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=4.2e-05 Score=74.50 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=82.2
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-------CCCccceEEEEEEEc--CCCeEEEEEEeCCCh-----------
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------TPTTDERYAVNVVDQ--PGGTKKTVVLREIPE----------- 344 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------~~t~~~~~~~~~v~~--~~~~~~~~i~d~~G~----------- 344 (430)
.+.+.++|++|.|||||+|.++...+.... .+..+..+....+.+ +|-...+.++||+|-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 489999999999999999999887554331 121122333333333 334556678999882
Q ss_pred -------hHHHhhhcc-----ccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 345 -------EAVAKLLSN-----KDSLA--ACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 345 -------e~~~~~~~~-----~~~~~--~ad~vilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
+++...+.. +..+. ..|+.++....+.. .+..+ ...++.+.. .+++|-|+-|+|...
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~-------~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK-------KVNLIPVIAKADTLT 172 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc-------cccccceeeccccCC
Confidence 223332211 11222 56888888887652 22222 234444432 578888899999877
Q ss_pred cc---CcHHHHHHHHHHhCCccc
Q 014101 410 FA---MAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 410 ~~---v~~~~~~~~~~~~g~~~f 429 (430)
.+ .-...+.+-...++++.|
T Consensus 173 ~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 173 KDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCccee
Confidence 42 225566666677777665
No 359
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.13 E-value=8.3e-06 Score=71.55 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=62.3
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
.++..+++.+...|..||.|.||+|+.-||+.+|.+ +|.|-+-=.+..+++.+ |.|.+| |+|-||+-+++.
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mikeV------ded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKEV------DEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHHHHHh------hcccccchhHHHHHHHHHH
Confidence 567889999999999999999999999999999877 58888888888888888 567788 999999988653
No 360
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=5.5e-06 Score=71.05 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=39.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
+++++|.+|||||||+|++.+....... ...+.+.....+.+++ ...+|||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988765433 3333444445566653 3678999984
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=1.5e-05 Score=77.95 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=47.2
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
.+..+++.|+|-||||||||||++.+.....++ +..|.+.....+.+..+ ..++||+|-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 345688999999999999999999999886555 55577777777777733 678999985
No 362
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.11 E-value=4.3e-05 Score=73.26 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=88.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCC----------cC--CC-------------------ccceEEEEEEEcCC
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN----------YT--PT-------------------TDERYAVNVVDQPG 331 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~----------~~--~t-------------------~~~~~~~~~v~~~~ 331 (430)
+..++++-+|.---||||||-|++.+.-... +. .+ +|.++.+....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999986642210 00 01 22333333333333
Q ss_pred CeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHH--HHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 332 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATE--LLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 332 ~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~--~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+.++.+-||+|+++|..-. ..-...||++|+++|+-. .-.++.++ ++..+.. -.-+||..||+||.+
T Consensus 84 ~KRkFIiADTPGHeQYTRNM--aTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG-------IrhvvvAVNKmDLvd 153 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNM--ATGASTADLAILLVDARK-GVLEQTRRHSFIASLLG-------IRHVVVAVNKMDLVD 153 (431)
T ss_pred ccceEEEecCCcHHHHhhhh--hcccccccEEEEEEecch-hhHHHhHHHHHHHHHhC-------CcEEEEEEeeecccc
Confidence 46778899999999998765 456688999999999842 22222222 3333332 134889999999987
Q ss_pred cc-----CcHHHHHHHHHHhCCc
Q 014101 410 FA-----MAIQDSTRVFTFLVMV 427 (430)
Q Consensus 410 ~~-----v~~~~~~~~~~~~g~~ 427 (430)
=. ....+-..|+.++|+.
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~ 176 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLK 176 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC
Confidence 32 2255667788888764
No 363
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.10 E-value=8.8e-06 Score=72.25 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=41.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...++|+++|.||||||||+|++.+....... +..|.+.....+.+. ..+.++||+|
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence 44589999999999999999999998764443 344444444555554 2366899988
No 364
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.08 E-value=3.9e-06 Score=84.07 Aligned_cols=135 Identities=18% Similarity=0.290 Sum_probs=97.3
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
+.+|+.|||..++|||+|+++++.+.+.+.. .+.+..|. +.+.+++...-+.+.|.+|. .- ..+...+|++
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~k-kE~vv~gqs~lLlirdeg~~-~~------aQft~wvdav 99 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFK-KEVVVDGQSHLLLIRDEGGH-PD------AQFCQWVDAV 99 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccce-eeEEeeccceEeeeecccCC-ch------hhhhhhccce
Confidence 4579999999999999999999999987766 45555565 45555645555666666663 21 3566889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc--c-CcHHHHHHHHHHhC-Cccc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF--A-MAIQDSTRVFTFLV-MVLY 429 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~--~-v~~~~~~~~~~~~g-~~~f 429 (430)
|+||.+.+..+|+.+..+...+..+... ..+|+++|+++.=.... + +....+.+++..+. +.||
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r--~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~ 167 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNI--SDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYY 167 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhccccccc--ccchHHhhcCcchhhcccccccchHHHHHHHHhcCcccee
Confidence 9999999999999999888887766542 37999999998655443 2 33455555555443 4443
No 365
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.06 E-value=5.4e-06 Score=77.54 Aligned_cols=71 Identities=23% Similarity=0.182 Sum_probs=35.9
Q ss_pred EEEEEeCCChhHHHhhhccc----ccc--ccccEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 014101 335 KTVVLREIPEEAVAKLLSNK----DSL--AACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 405 (430)
Q Consensus 335 ~~~i~d~~G~e~~~~~~~~~----~~~--~~ad~vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~ 405 (430)
.+.++|||||.++...+... ..+ ...-++++++|+.. +..|- ..++..+...... +.|.|.|.||+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~---~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRL---ELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHH---TSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhC---CCCEEEeeecc
Confidence 57899999997766554110 111 34568889999753 33343 3333222211111 68999999999
Q ss_pred CCCCc
Q 014101 406 DLDSF 410 (430)
Q Consensus 406 Dl~~~ 410 (430)
|+.+.
T Consensus 167 Dl~~~ 171 (238)
T PF03029_consen 167 DLLSK 171 (238)
T ss_dssp GGS-H
T ss_pred Ccccc
Confidence 99883
No 366
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.05 E-value=1.9e-06 Score=75.52 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=58.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCC--CCCCCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 171 ELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP--ECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 171 ~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~--~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
+.|...++.+..+|+.||.|.||+|+..||+.||...+ ..-....+|++++|.|.||+|||-||+=-+...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 55677778888999999999999999999999998643 222444679999999999999999998765543
No 367
>PRK13768 GTPase; Provisional
Probab=98.02 E-value=1.5e-05 Score=75.36 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=42.1
Q ss_pred EEEEEeCCChhHHHh---hh-cccccccc--ccEEEEEEECCChhhHHH-H-HHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 335 KTVVLREIPEEAVAK---LL-SNKDSLAA--CDIAVFVHDSSDESSWKR-A-TELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 335 ~~~i~d~~G~e~~~~---~~-~~~~~~~~--ad~vilv~D~t~~~S~~~-~-~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
.+.+||++|...... .. .....+.. ++++++|+|++...+... . ..|+....... .+.|+++|.||+|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~----~~~~~i~v~nK~D 173 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR----LGLPQIPVLNKAD 173 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH----cCCCEEEEEEhHh
Confidence 578999999755332 11 00112222 899999999965433222 1 22222211111 1689999999999
Q ss_pred CCCc
Q 014101 407 LDSF 410 (430)
Q Consensus 407 l~~~ 410 (430)
+...
T Consensus 174 ~~~~ 177 (253)
T PRK13768 174 LLSE 177 (253)
T ss_pred hcCc
Confidence 9774
No 368
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.01 E-value=5.2e-05 Score=69.41 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=58.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh-----hhccccccccc
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-----LLSNKDSLAAC 360 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~-----~~~~~~~~~~a 360 (430)
-+|+++|-|.||||||+..++.......+...++.+.....+.++| ..++++|.+|--.--+ -.+.....+.|
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 5899999999999999999987665544434444444444455553 3456778777311000 01123566889
Q ss_pred cEEEEEEECCChhhHH
Q 014101 361 DIAVFVHDSSDESSWK 376 (430)
Q Consensus 361 d~vilv~D~t~~~S~~ 376 (430)
|.|+.|.|++..+.-.
T Consensus 141 DlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQR 156 (364)
T ss_pred cEEEEEecCCcchhHH
Confidence 9999999998755443
No 369
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.00 E-value=5.3e-06 Score=48.58 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHH
Q 014101 59 LKRIFILCDHDRDGALSDAELNDF 82 (430)
Q Consensus 59 l~~~F~~~D~d~dG~is~~El~~~ 82 (430)
|+++|+.+|+|+||.||.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 578999999999999999999875
No 370
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=4.8e-05 Score=69.12 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=76.7
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC---------CCccceEEEEEEEcCCCeEEEEEEeCCCh----------
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT---------PTTDERYAVNVVDQPGGTKKTVVLREIPE---------- 344 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~---------~t~~~~~~~~~v~~~~~~~~~~i~d~~G~---------- 344 (430)
-.++|.|||.+|.|||||+|.+.......... .|+......+.+.-.+-..++.++||+|-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999998665443221 12222222233343445566779999982
Q ss_pred --------hHHHhhh------ccccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 014101 345 --------EAVAKLL------SNKDSLA--ACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDL 407 (430)
Q Consensus 345 --------e~~~~~~------~~~~~~~--~ad~vilv~D~t~~~S~~~~-~~~l~~l~~~~~~~~~~~PiilVgnK~Dl 407 (430)
+++.... .....+. ..+++++....+. .|+.-+ .++++.+.+ -+.+|=|.-|+|-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-------vvNvvPVIakaDt 196 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-------VVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-------hheeeeeEeeccc
Confidence 2222221 0122222 3466777766664 344332 234455543 2567778899996
Q ss_pred CCc--cCc-HHHHHHHHHHhCCccc
Q 014101 408 DSF--AMA-IQDSTRVFTFLVMVLY 429 (430)
Q Consensus 408 ~~~--~v~-~~~~~~~~~~~g~~~f 429 (430)
..- +.. .+.+++-...+|+.+|
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vY 221 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVY 221 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccc
Confidence 541 111 3444444555666543
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.98 E-value=2.8e-05 Score=74.99 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=43.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
...++|+++|.||||||||+|++.+....... +..|.+.....+.+++ .+.++||+|-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 45689999999999999999999998764443 4445555555566552 3668999995
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.98 E-value=1.8e-05 Score=70.22 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=42.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
...++++++|.+|||||||+|++.+..+.... +..+.+.....+.++ ..+.++||+|-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45579999999999999999999998765333 444445555555554 34678999983
No 373
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=4e-05 Score=81.60 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=80.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCC--CCC---Cc-------------CCCccceEEEEEEEcCCCeEEEEEEeCCChh
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRP--FSD---NY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 345 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~--~~~---~~-------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e 345 (430)
..-+|.++|...+|||||..+++-.. ... .. ...++......++.+.+ ...+.++||+|+-
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcc
Confidence 44589999999999999999986321 111 00 01223333444555553 5788899999998
Q ss_pred HHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 346 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 346 ~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
.|..-. ...++-+|++++|+|+..--..+. ...++...++ ++|.+++.||+|+...
T Consensus 88 DFt~EV--~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~~------~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEV--ERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADKY------GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHH--HHHHHhhcceEEEEECCCCeeecH-HHHHHHHhhc------CCCeEEEEECcccccc
Confidence 888766 678899999999999986433332 2233334333 6999999999999774
No 374
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=5.6e-05 Score=74.37 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=86.2
Q ss_pred EEEEeCCCCCCHHHHHHHHh--CCCCCC-------------Cc-------CCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 287 QCFVFGPKKAGKSVLLNSFL--GRPFSD-------------NY-------TPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~--~~~~~~-------------~~-------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
..+||-.|.+|||||-.+++ ++.+.. .+ ...+.+...+..+++. ...+.++||+|+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--~~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--DCLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--CeEEeccCCCCc
Confidence 57999999999999999885 221110 00 1223344444455555 467789999999
Q ss_pred hHHHhhhccccccccccEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHH
Q 014101 345 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 423 (430)
Q Consensus 345 e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~-~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~ 423 (430)
+.|..=. ...+..+|.++.|+|+..- .+. ...+++ +-+. .++||+-..||.|... +.+.+-..++.+.
T Consensus 92 eDFSEDT--YRtLtAvDsAvMVIDaAKG--iE~qT~KLfe-Vcrl-----R~iPI~TFiNKlDR~~-rdP~ELLdEiE~~ 160 (528)
T COG4108 92 EDFSEDT--YRTLTAVDSAVMVIDAAKG--IEPQTLKLFE-VCRL-----RDIPIFTFINKLDREG-RDPLELLDEIEEE 160 (528)
T ss_pred cccchhH--HHHHHhhheeeEEEecccC--ccHHHHHHHH-HHhh-----cCCceEEEeecccccc-CChHHHHHHHHHH
Confidence 9988765 6777889999999998742 211 112222 2222 2799999999999887 4556777777777
Q ss_pred hCCc
Q 014101 424 LVMV 427 (430)
Q Consensus 424 ~g~~ 427 (430)
+++.
T Consensus 161 L~i~ 164 (528)
T COG4108 161 LGIQ 164 (528)
T ss_pred hCcc
Confidence 7764
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.93 E-value=3.2e-05 Score=74.14 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
...++|+++|.||||||||+|++.+.....+. +..|.+.....+.+.. .+.++||+|-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999987754443 3444444455666542 3578999996
No 376
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.92 E-value=7.4e-05 Score=72.65 Aligned_cols=122 Identities=22% Similarity=0.354 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCch
Q 014101 57 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLE 135 (430)
Q Consensus 57 ~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~ 135 (430)
+..+.+|..+|.|.||.++.+|+...+.. .+.++..++..+ |.+.+| |+.+|-
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E~~l~~~F~~i------D~~hdG~i~~~Ei-------------- 104 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDN------KELELYRIFQSI------DLEHDGKIDPNEI-------------- 104 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHH------hHHHHHHHHhhh------ccccCCccCHHHH--------------
Confidence 36678999999999999999999887553 466777888887 678888 877665
Q ss_pred hHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCC----
Q 014101 136 TTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP---- 211 (430)
Q Consensus 136 ~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~---- 211 (430)
|+.|+..|-+ ++.+ .+...|+..|+||++.|+.+|.++.+...|...
T Consensus 105 --~~~l~~~gi~------------------------l~de---~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di 155 (463)
T KOG0036|consen 105 --WRYLKDLGIQ------------------------LSDE---KAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDI 155 (463)
T ss_pred --HHHHHHhCCc------------------------cCHH---HHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHH
Confidence 5555655521 2222 255799999999999999999999887766422
Q ss_pred ---CCCCcccccccccCCcccchhhHHhh
Q 014101 212 ---WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 212 ---~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
|...- -.|.+.|..|+ ++|..+
T Consensus 156 ~~~W~h~~---~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 156 YDFWRHVL---LIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred HHhhhhhe---EEEccccccCC-cchHHH
Confidence 43321 36788888888 887766
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.91 E-value=3.3e-05 Score=67.29 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=41.1
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...+++++|.+|+|||||+|++.+...... .++.+.+.....+..++ .+.+|||+|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999997664333 35666655544454442 477899998
No 378
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.90 E-value=6.3e-06 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhc
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFS 205 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~ 205 (430)
|+++|+.||+|+||+|+.+||+.+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 68999999999999999999999987
No 379
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.90 E-value=6.8e-06 Score=48.14 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhh
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLF 204 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~ 204 (430)
|+++|+.+|+|+||.||.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999853
No 380
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=9.4e-05 Score=74.68 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=80.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-------------CCCccceEEEE--EEEc-CCCeEEEEEEeCCChhHH
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------TPTTDERYAVN--VVDQ-PGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------------~~t~~~~~~~~--~v~~-~~~~~~~~i~d~~G~e~~ 347 (430)
+.-++.||-.-.-|||||..|++...-.... ...-|.+...+ .+.+ +|....+.++||+|+-.|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 3447899999999999999999743221100 01112222222 2222 244566779999999888
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
..-. ...+.-|+++++|+|++.--.-+.+..++..+.. +.-+|.|.||+|++..+
T Consensus 139 s~EV--sRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-------~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 139 SGEV--SRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-------GLAIIPVLNKIDLPSAD 193 (650)
T ss_pred ccee--hehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-------CCeEEEeeeccCCCCCC
Confidence 8765 5677889999999999875444455566666654 57889999999998853
No 381
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=3.6e-05 Score=74.90 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=56.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC-------------C---eEEEEEEeCCCh----
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------G---TKKTVVLREIPE---- 344 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-------------~---~~~~~i~d~~G~---- 344 (430)
.+++.+||.||||||||.|.++.........|..+.+.....+.++. . ...+.++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999999886544447555444444444332 1 123458888772
Q ss_pred ---hHHHhhhccccccccccEEEEEEECC
Q 014101 345 ---EAVAKLLSNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 345 ---e~~~~~~~~~~~~~~ad~vilv~D~t 370 (430)
+..-.-. ...+|.+|+++.|+++.
T Consensus 82 s~GeGLGNkF--L~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKF--LDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHH--HHhhhhcCeEEEEEEec
Confidence 1111111 25669999999999976
No 382
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.86 E-value=0.00013 Score=56.91 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 53 PRCVRALKRIFILCDHDRDGALSDAELNDFQVKC----FNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 53 ~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~----~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
+..+..|-.+|+.|-.| +|.||..||+.++.+- ++.+-.+..++.|++.+ |.|++| |+|.||+.++..
T Consensus 4 E~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~L------D~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 4 EHSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDL------DDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHh------CCCCCCcCcHHHHHHHHHH
Confidence 45688899999999854 4699999999997554 35556788899999999 788999 999999998753
No 383
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.83 E-value=0.00011 Score=72.78 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=83.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC--CCCCc------------CCCccceEEEE--EEEcCCCeEEEEEEeCCChhHHHh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP--FSDNY------------TPTTDERYAVN--VVDQPGGTKKTVVLREIPEEAVAK 349 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~--~~~~~------------~~t~~~~~~~~--~v~~~~~~~~~~i~d~~G~e~~~~ 349 (430)
-+|++|-.-.-|||||+..++.+. |.... ...-|.+.-.+ .+.+. ...+.|+||+|+..|-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~--~~~INIvDTPGHADFGG 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN--GTRINIVDTPGHADFGG 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC--CeEEEEecCCCcCCccc
Confidence 478999999999999999998653 22211 01122333333 34444 47788999999988776
Q ss_pred hhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCc--HHHHHHHHHHhCC
Q 014101 350 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA--IQDSTRVFTFLVM 426 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~--~~~~~~~~~~~g~ 426 (430)
-. ...+.=.|++++++|+.+- ...+.+-.++..... +.+-|||.||+|.+..+.. ..+..++--++|+
T Consensus 84 EV--ERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A 153 (603)
T COG1217 84 EV--ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGA 153 (603)
T ss_pred hh--hhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 55 5677789999999999762 222223333333333 4666889999999986422 3455555544543
No 384
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0002 Score=72.29 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=71.8
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhcccccccccc
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 361 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad 361 (430)
.++++-|+|+|+||+||||||+.++..-...+-....|. ..-+.|....+.++.++ .....++ ...+-||
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp--~Dl~~mi---DvaKIaD 135 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECP--SDLHQMI---DVAKIAD 135 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeCh--HHHHHHH---hHHHhhh
Confidence 356678899999999999999988765332222112221 11223455666677776 3455554 5567799
Q ss_pred EEEEEEECCChhhHH-HHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCccCc
Q 014101 362 IAVFVHDSSDESSWK-RATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAMA 413 (430)
Q Consensus 362 ~vilv~D~t~~~S~~-~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~v~ 413 (430)
.|++.+|.+- .|+ +..+++.-+... ..| ++-|+++.|+-..+.+
T Consensus 136 LVlLlIdgnf--GfEMETmEFLnil~~H------GmPrvlgV~ThlDlfk~~st 181 (1077)
T COG5192 136 LVLLLIDGNF--GFEMETMEFLNILISH------GMPRVLGVVTHLDLFKNPST 181 (1077)
T ss_pred eeEEEecccc--CceehHHHHHHHHhhc------CCCceEEEEeecccccChHH
Confidence 9999999862 232 223344444433 345 7789999999886544
No 385
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00013 Score=72.64 Aligned_cols=132 Identities=16% Similarity=0.119 Sum_probs=86.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-------------CCCccceEEEEEEEc-----CCCeEEEEEEeCCChhH
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------TPTTDERYAVNVVDQ-----PGGTKKTVVLREIPEEA 346 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-------------~~t~~~~~~~~~v~~-----~~~~~~~~i~d~~G~e~ 346 (430)
.-+..++..-.-|||||..|++...-.... ...-|.+...+.+.+ +|....+.++||+|+-.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 346788888899999999999754321111 011233333333322 34566778999999977
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCC
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 426 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~ 426 (430)
|.--. ...+..|.++++|+|++.--.-+.+.+.+..+.+ +.-+|-|.||+||+...+ ..-.+++..-.|+
T Consensus 89 FsYEV--SRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-------~LeIiPViNKIDLP~Adp-ervk~eIe~~iGi 158 (603)
T COG0481 89 FSYEV--SRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------NLEIIPVLNKIDLPAADP-ERVKQEIEDIIGI 158 (603)
T ss_pred eEEEe--hhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------CcEEEEeeecccCCCCCH-HHHHHHHHHHhCC
Confidence 76543 4567889999999999975444556666666654 578999999999998432 2334444444454
No 386
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=6.9e-05 Score=77.79 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=75.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCC----------------CeEEEEEEeCCChhHHHh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG----------------GTKKTVVLREIPEEAVAK 349 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~----------------~~~~~~i~d~~G~e~~~~ 349 (430)
.-|+|+|.-..|||-|+..+.+.........+++..+....++..+ ....++++||+|++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 4589999999999999999988765543323322222111111110 122467999999999999
Q ss_pred hhccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 350 LLSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~---~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
+. ......||.+|+|+|+.. +.+.+.+. .++.. +.|+||..||+|..
T Consensus 556 lR--srgsslC~~aIlvvdImhGlepqtiESi~----lLR~r------ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 556 LR--SRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRMR------KTPFIVALNKIDRL 605 (1064)
T ss_pred hh--hccccccceEEEEeehhccCCcchhHHHH----HHHhc------CCCeEEeehhhhhh
Confidence 87 566688999999999874 34443332 22222 79999999999983
No 387
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.77 E-value=0.00015 Score=66.34 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
..+..|+++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999754
No 388
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00012 Score=70.64 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=73.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceEEEEEEE------cCCC--------------------------
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVD------QPGG-------------------------- 332 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~~~~~v~------~~~~-------------------------- 332 (430)
.=|+++|.-..||||+|+-++.+.++.... |..++++.+..+. ++|+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 358999999999999999999998864321 2122222222111 1111
Q ss_pred -------eEEEEEEeCCChh-----------HHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCC
Q 014101 333 -------TKKTVVLREIPEE-----------AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGF 394 (430)
Q Consensus 333 -------~~~~~i~d~~G~e-----------~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~ 394 (430)
...+.++||+|-- .|.... .=+...+|.|+++||+...+--++..+.+..+...
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~--~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~------ 210 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVL--EWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH------ 210 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHH--HHHHHhccEEEEEechhhccccHHHHHHHHHhhCC------
Confidence 1233578888731 122222 23557899999999987655545566666666544
Q ss_pred CCcEEEEEeCCCCCCc
Q 014101 395 EVPCLIVAAKDDLDSF 410 (430)
Q Consensus 395 ~~PiilVgnK~Dl~~~ 410 (430)
.-.+-||.||+|..+.
T Consensus 211 EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT 226 (532)
T ss_pred cceeEEEeccccccCH
Confidence 3356788999998874
No 389
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.76 E-value=6.8e-05 Score=73.90 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=56.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCC-CCCcCCCccceEEEEEEEcCCCe---------------EEEEEEeCCChhH---
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEEA--- 346 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~-~~~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~d~~G~e~--- 346 (430)
+++.++|.||||||||++.+++... .....|..+.......+.+++.. ..+.+.|.+|--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999887 54444544444444555555321 2456778877311
Q ss_pred ----HHhhhccccccccccEEEEEEECC
Q 014101 347 ----VAKLLSNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 347 ----~~~~~~~~~~~~~ad~vilv~D~t 370 (430)
..... ...++++|+++.|+++.
T Consensus 83 ~g~Glgn~f--L~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQF--LANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHH--HHHHHhCCEEEEEEeCC
Confidence 11111 25679999999999974
No 390
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.76 E-value=1.6e-05 Score=56.73 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhccCCCCC--CCCCcccccccccCCcccchhhHHhh
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFSTAPECP--WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~--~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
+..+|+.+|.|++|.|+.+|+..++......+ .....+.+..|.+++|.|++++|+..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 56899999999999999999999998643221 11234667889999999999999764
No 391
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.74 E-value=4.6e-05 Score=75.08 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHHHHHcCCchhHHHHH
Q 014101 63 FILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHALFIEKGRLETTWTVL 141 (430)
Q Consensus 63 F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~~~~~~~~~~~w~~l 141 (430)
|+.+|+|+||.|+.++|... ....++.--++.|++.+.+... +..+| ++|++|+........ +.
T Consensus 284 FweLD~Dhd~lidk~~L~ry----~d~tlt~~ivdRIFs~v~r~~~--~~~eGrmdykdFv~FilA~e~--k~------- 348 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRY----GDHTLTERIVDRIFSQVPRGFT--VKVEGRMDYKDFVDFILAEED--KD------- 348 (493)
T ss_pred HhhhccccccccCHHHHHHH----hccchhhHHHHHHHhhccccce--eeecCcccHHHHHHHHHHhcc--CC-------
Confidence 99999999999999999765 3344667778888885532211 23556 999999986421111 00
Q ss_pred HhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc-------CCCC--CC
Q 014101 142 RKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST-------APEC--PW 212 (430)
Q Consensus 142 ~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~-------~~~~--~~ 212 (430)
. +. -|.=-|+..|-||||.|+.+||+-.|.. .+.. |.
T Consensus 349 ------------------------t-------~~---SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~f 394 (493)
T KOG2562|consen 349 ------------------------T-------PA---SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPF 394 (493)
T ss_pred ------------------------C-------cc---chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccH
Confidence 0 00 1345899999999999999999987754 1111 11
Q ss_pred CC--CcccccccccCCcccchhhHHhhh
Q 014101 213 DE--APYKDAAEKTALGGLSLDGFLSEW 238 (430)
Q Consensus 213 ~~--~~~~~~~d~~~dg~i~~~ef~~~w 238 (430)
+. .++...+---..|+||+++|+..-
T Consensus 395 ed~l~qi~DMvkP~~~~kItLqDlk~sk 422 (493)
T KOG2562|consen 395 EDALCQIRDMVKPEDENKITLQDLKGSK 422 (493)
T ss_pred HHHHHHHHHHhCccCCCceeHHHHhhcc
Confidence 11 112222222237889999999853
No 392
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.73 E-value=0.00023 Score=70.27 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=65.1
Q ss_pred CCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCCh----------hhHHHHHHHHHHH
Q 014101 316 PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----------SSWKRATELLVEV 385 (430)
Q Consensus 316 ~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~----------~S~~~~~~~l~~l 385 (430)
||.|... ..+.+. ...+.+||.+|+...+..| ..++.++++|++|+|+++- ..+.+....+..+
T Consensus 170 ~T~Gi~~--~~f~~~--~~~~~~~DvgGqr~~R~kW--~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l 243 (342)
T smart00275 170 PTTGIQE--TAFIVK--KLFFRMFDVGGQRSERKKW--IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI 243 (342)
T ss_pred CccceEE--EEEEEC--CeEEEEEecCCchhhhhhH--HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence 5555433 345554 3557789999999999999 7899999999999999963 4566666677777
Q ss_pred HhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 386 ASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 386 ~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
...... .++|++|++||.|+..+
T Consensus 244 ~~~~~~--~~~piil~~NK~D~~~~ 266 (342)
T smart00275 244 CNSRWF--ANTSIILFLNKIDLFEE 266 (342)
T ss_pred HcCccc--cCCcEEEEEecHHhHHH
Confidence 664333 37999999999998653
No 393
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.72 E-value=2.6e-05 Score=61.16 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCC--CCCCCCHHHHHHhhcc-CCCCC------CCCCcccccccccCCcccchhhHHhhhh
Q 014101 175 EAIDFLKGIFELFDAD--DDNSLRPIEVEDLFST-APECP------WDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~d--~dG~is~~el~~~~~~-~~~~~------~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+...|...|..|+.. .+|.|+.+||+.+|.. .|..+ .....+++.+|.|+||.|+|++|+....
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4556688999999855 4799999999999973 32211 1123577889999999999999987754
No 394
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=5.8e-05 Score=68.07 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCC-------CcCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSD-------NYTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~-------~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
..+++++|.+|||||||+|++.+..... ...+..|++.....+.++. ...++||+|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4589999999999999999999764321 1123334445445555542 357899998
No 395
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.69 E-value=9e-05 Score=67.07 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-hcCCccCCC-cCHHhHHHHHHHHHHcC
Q 014101 55 CVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEK-LREGVNERG-LTLAGFLFLHALFIEKG 132 (430)
Q Consensus 55 ~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~-~~~d~~~~g-i~~~eFl~~~~~~~~~~ 132 (430)
..+.|..+|..-|.|-||+||..|++...++- +.+-+++-++.-... ...|.+++| |.++||---+.. .++
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImek-----taEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla--skg 171 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEK-----TAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA--SKG 171 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHH-----HHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh--hcC
Confidence 46789999999999999999999999886653 223333333221111 112678999 999999754221 222
Q ss_pred CchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCH---------HHHHHh
Q 014101 133 RLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRP---------IEVEDL 203 (430)
Q Consensus 133 ~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~---------~el~~~ 203 (430)
+.+ -.++.....++.+.+.++ ++.|..=++|.+|..+. +|+-..
T Consensus 172 hse--kevadairlneelkVDeE-------------------------tqevlenlkdRwyqaDsppadlllteeEflsF 224 (362)
T KOG4251|consen 172 HSE--KEVADAIRLNEELKVDEE-------------------------TQEVLENLKDRWYQADSPPADLLLTEEEFLSF 224 (362)
T ss_pred cch--HHHHHHhhccCcccccHH-------------------------HHHHHHhhhhhhccccCchhhhhhhHHHHHHH
Confidence 221 122333333333333321 23444445566665444 777766
Q ss_pred hccC---CCCCCCCCcccccccccCCcccchhhHHhh
Q 014101 204 FSTA---PECPWDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
+... +....-..++.+..|.|+|..+|-.+|++.
T Consensus 225 LHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFisl 261 (362)
T KOG4251|consen 225 LHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISL 261 (362)
T ss_pred cChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcC
Confidence 5431 111111234556788888889999999887
No 396
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.68 E-value=6.4e-05 Score=69.94 Aligned_cols=113 Identities=19% Similarity=0.097 Sum_probs=68.2
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCC-CcCCCccceEEEEEEEcCCCeEEEEEEeCCCh----------hHHHhhh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 351 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~----------e~~~~~~ 351 (430)
....+++++|.+|||||||||.++..+... ...+..|.+..+....+. ..+.++|.+|. ..+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 445799999999999999999998776433 333355555555555554 34556787771 2233333
Q ss_pred cccccccc---ccEEEEEEECCCh-hhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 352 SNKDSLAA---CDIAVFVHDSSDE-SSW-KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 352 ~~~~~~~~---ad~vilv~D~t~~-~S~-~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..|+.+ --.+++..|++-+ ..- .....|+.+ . ++|+.+|.||||...
T Consensus 211 --~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~------~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 211 --KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---N------NVPMTSVFTKCDKQK 262 (320)
T ss_pred --HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---c------CCCeEEeeehhhhhh
Confidence 233322 2344556666532 111 122334322 1 799999999999865
No 397
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00017 Score=67.63 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=87.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC---C-------CCCCc----CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR---P-------FSDNY----TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~---~-------~~~~~----~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
++-++|..||.-+-|||||...++.- . +.... ...-|.++....+++.-....+-.+|++|+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 45689999999999999998877521 1 11100 1123444555556665556667789999998876
Q ss_pred hhhccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCCCcc----CcHHHHHHH
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFA----MAIQDSTRV 420 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~P-iilVgnK~Dl~~~~----v~~~~~~~~ 420 (430)
... ..-..+.|+.|+|+.+++- ++-+.+ .-.++. .+| ++++.||+|+.+++ .-..+.+++
T Consensus 90 KNM--ItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv------Gvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 90 KNM--ITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV------GVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred HHH--hhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc------CCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 543 3445678999999999983 333332 111222 465 67889999999853 225678888
Q ss_pred HHHhCCc
Q 014101 421 FTFLVMV 427 (430)
Q Consensus 421 ~~~~g~~ 427 (430)
..+++++
T Consensus 158 Ls~y~f~ 164 (394)
T COG0050 158 LSEYGFP 164 (394)
T ss_pred HHHcCCC
Confidence 8888875
No 398
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.66 E-value=0.00036 Score=68.29 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=38.3
Q ss_pred EEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 334 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 334 ~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
..+.++||+|...-.. .....+|.+++|.+....+....+. ..+. .+.-++|+||+|+....
T Consensus 149 ~d~viieT~Gv~qs~~-----~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~--------E~aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 149 YDVILVETVGVGQSET-----AVAGMVDFFLLLQLPGAGDELQGIK---KGIM--------ELADLIVINKADGDNKT 210 (332)
T ss_pred CCEEEEECCCCccchh-----HHHHhCCEEEEEecCCchHHHHHHH---hhhh--------hhhheEEeehhcccchh
Confidence 4567899998753221 2346799999997644334433322 2122 23448999999998743
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.65 E-value=8.3e-05 Score=73.44 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCcC-CC-----ccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRPFSDNYT-PT-----TDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t-----~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
++|+|.||||||||||++++.....+.. +. ..++.....+.++++. .++||||-
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~ 234 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGF 234 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCc
Confidence 7999999999999999999775433221 11 0123344566665333 57899983
No 400
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.65 E-value=0.00018 Score=60.71 Aligned_cols=64 Identities=13% Similarity=0.326 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
...+..+|..||.+++|+|..+.|+++|.. .|..++++|++.+.+.. -.+..| |+|.+|..+++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m~r~~------p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEMYREA------PIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHHHHhC------CcccCCceeHHHHHHHHH
Confidence 457899999999999999999999999887 79999999999999886 244567 99999998854
No 401
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00046 Score=70.38 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=76.8
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCC--------------------Cc----C-----CCccceEEEEEEEcCCC
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD--------------------NY----T-----PTTDERYAVNVVDQPGG 332 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~--------------------~~----~-----~t~~~~~~~~~v~~~~~ 332 (430)
....+.++|+|...+|||||+-+++..--.. .| . .-.|++..+....+.-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3466899999999999999999886331110 00 0 11122333333333334
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHH-------HHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWK-------RATELLVEVASYGEDTGFEVPCLIVAAKD 405 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~-------~~~~~l~~l~~~~~~~~~~~PiilVgnK~ 405 (430)
...+.++|.+|+..|..-. ..-...||+.++|+|++- ..|+ +.++...-++..+ -.-++|+.||+
T Consensus 254 ~~~~tliDaPGhkdFi~nm--i~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKm 325 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNM--ISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKM 325 (603)
T ss_pred ceeEEEecCCCccccchhh--hccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC-----cceEEEEeecc
Confidence 5677899999987776644 456678999999999975 3332 3334333333332 24589999999
Q ss_pred CCCC
Q 014101 406 DLDS 409 (430)
Q Consensus 406 Dl~~ 409 (430)
|+.+
T Consensus 326 D~V~ 329 (603)
T KOG0458|consen 326 DLVS 329 (603)
T ss_pred cccC
Confidence 9987
No 402
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.64 E-value=0.00026 Score=69.28 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=58.2
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----------SSWKRATELLVEVASYGEDTGFEVPCLIVA 402 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~----------~S~~~~~~~l~~l~~~~~~~~~~~PiilVg 402 (430)
...+.+||.+|+...+..| ..++.++++|++|+|+++- ..+.+....+..+...... .++|++|++
T Consensus 160 ~~~~~~~DvgGq~~~R~kW--~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~--~~~pill~~ 235 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKW--IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF--ANTSIILFL 235 (317)
T ss_pred ceEEEEECCCCCcccchhH--HHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc--cCCCEEEEc
Confidence 4667899999999889888 7889999999999999873 4566666666666655332 279999999
Q ss_pred eCCCCCC
Q 014101 403 AKDDLDS 409 (430)
Q Consensus 403 nK~Dl~~ 409 (430)
||.|+..
T Consensus 236 NK~D~f~ 242 (317)
T cd00066 236 NKKDLFE 242 (317)
T ss_pred cChHHHH
Confidence 9999754
No 403
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.63 E-value=0.00014 Score=58.70 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=57.2
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
.|++++++.+..+|+..|. ++|.|+-++...++.+ ..++.+.+..|-... |.+++| ++++||+..|.+
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~IW~La------D~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQIWNLA------DIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-------SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhh------cCCCCCcCCHHHHHHHHHH
Confidence 4788999999999999995 7899999999998765 357789999999887 788999 999999988764
No 404
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.63 E-value=5.8e-05 Score=62.60 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHH
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFL 124 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~ 124 (430)
...+-+-.+.||++++|.|...||+-++.+ +|..++++|++.++.-. .|++| |+|+.|+..
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLtt-lGekl~eeEVe~Llag~-------eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTT-LGEKLTEEEVEELLAGQ-------EDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHH-HHhhccHHHHHHHHccc-------cccCCcCcHHHHHHH
Confidence 346778889999999999999999999876 58999999999998764 46778 999999864
No 405
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.62 E-value=0.00016 Score=70.73 Aligned_cols=65 Identities=26% Similarity=0.397 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 56 VRALKRIFILCDHDRDGALSDAELNDFQV---KCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~is~~El~~~~~---~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
+..|.-+|+++|+|+.|.||.+|+.++.. +-+..++++.++.++-+.+ |.|++| |++.|||..++
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m------D~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM------DLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh------ccCCCCcccHHHHHHHHh
Confidence 34688899999999999999999998832 3356778999999988888 789999 99999998865
No 406
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.62 E-value=0.00034 Score=67.90 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=38.4
Q ss_pred EEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 334 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 334 ~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
..+.++||+|..... ......+|.++++-.. .+-+++......+. .+|.++|.||+|+...
T Consensus 127 ~D~viidT~G~~~~e-----~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~--------~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE-----VDIANMADTFVVVTIP---GTGDDLQGIKAGLM--------EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh-----hHHHHhhceEEEEecC---CccHHHHHHHHHHh--------hhccEEEEEcccccch
Confidence 456788998853211 1345667888888443 34444444444342 4688999999999863
No 407
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.62 E-value=0.00012 Score=63.65 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-CCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
...+++++|.+|||||||+|.+.+....... .+..+... ..+..+ ..+.++||+|
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 4578999999999999999999987643322 22222222 333333 2367889988
No 408
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.61 E-value=6.6e-05 Score=65.43 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=33.4
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
.++++|++|||||||+|.+.+.....+. .....++.....+.++++ ..++||||-..+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 7899999999999999999987432211 011111222344555432 3578998864443
No 409
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.59 E-value=0.00067 Score=66.20 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=53.3
Q ss_pred EEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhh----------HHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 014101 334 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESS----------WKRATELLVEVASYGEDTGFEVPCLIVAA 403 (430)
Q Consensus 334 ~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S----------~~~~~~~l~~l~~~~~~~~~~~PiilVgn 403 (430)
..+.++|.+|+..-+.-| ...+.++++||||.++++-+. ..+-...++.+.+..-. .+.++||..|
T Consensus 195 ~~f~~~DvGGQRseRrKW--ihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F--~~tsiiLFLN 270 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKW--IHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF--ANTSIILFLN 270 (354)
T ss_pred CceEEEeCCCcHHHhhhH--HHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc--ccCcEEEEee
Confidence 455688999987777777 678999999999999886322 22333455566554433 2799999999
Q ss_pred CCCCCCc
Q 014101 404 KDDLDSF 410 (430)
Q Consensus 404 K~Dl~~~ 410 (430)
|.||-.+
T Consensus 271 K~DLFeE 277 (354)
T KOG0082|consen 271 KKDLFEE 277 (354)
T ss_pred cHHHHHH
Confidence 9999553
No 410
>PLN02964 phosphatidylserine decarboxylase
Probab=97.57 E-value=0.00027 Score=74.44 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=61.8
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHHH
Q 014101 50 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHAL 127 (430)
Q Consensus 50 ~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~~ 127 (430)
..++++...++++|..+|.|+||.|+.+|+..++.. +|...+++++..+++.+ |.+++| |+++||..++..
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~~~seEEL~eaFk~f------DkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGNLVAANKKEELFKAA------DLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hccCCCHHHHHHHHHHh------CCCCCCcCCHHHHHHHHHh
Confidence 456676777999999999999999999999999775 57778899999999999 678889 999999998764
No 411
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00063 Score=66.78 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHhhccCCCCCCC---CCcccccccccCCcccchhhHHhh
Q 014101 191 DDNSLRPIEVEDLFSTAPECPWD---EAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 191 ~dG~is~~el~~~~~~~~~~~~~---~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
-++.|+..+++.+-+...+.+.+ .+.+..-+|.|+||.||.+||++-
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~V 450 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAV 450 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHH
Confidence 34567777777766653332221 123445677777777777777654
No 412
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.56 E-value=1.1e-05 Score=56.82 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHhhccCCCC-C--CCCCcccccccccCCcccchhhHHhhhh
Q 014101 191 DDNSLRPIEVEDLFSTAPEC-P--WDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 191 ~dG~is~~el~~~~~~~~~~-~--~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
.+|.|+.+||+.+++..+.. . .+...++..+|.|++|.|+|+||++.|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37899999999998654332 2 2234566899999999999999999875
No 413
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.55 E-value=0.00034 Score=79.85 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=67.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc----CC--CccceEEEEEEEcCCCeEEEEEEeCCChh------------HHH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY----TP--TTDERYAVNVVDQPGGTKKTVVLREIPEE------------AVA 348 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~----~~--t~~~~~~~~~v~~~~~~~~~~i~d~~G~e------------~~~ 348 (430)
=.+|||++|+||||+|++- +-.++-.. .. ..+.+.. ...-+. ....++|++|.. ...
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHHHHH
Confidence 3699999999999999987 44443221 01 1111111 111111 224578888721 122
Q ss_pred hhh---ccccccccccEEEEEEECCCh-----hhH----HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 349 KLL---SNKDSLAACDIAVFVHDSSDE-----SSW----KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 349 ~~~---~~~~~~~~ad~vilv~D~t~~-----~S~----~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
.+. .....-+..++||+++|+.+. +.. ..++..+.++....+. .+||.||.||+|+..
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~---~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA---RFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecchhhc
Confidence 221 112223568999999997653 111 2455566667666544 799999999999863
No 414
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.55 E-value=7.9e-05 Score=58.10 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc-CCC------CCCCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 175 EAIDFLKGIFELFDADDDNSLRPIEVEDLFST-APE------CPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 175 ~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~-~~~------~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
.+..-|..+|..|-.| .|.++..||+.++.. .|. .|...+.+++..|.|+||.|+|+||+.+..-.
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556688999999843 469999999999975 221 22223457789999999999999999885543
No 415
>PRK12288 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00019 Score=70.91 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=35.8
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCcC-CC-----ccceEEEEEEEcCCCeEEEEEEeCCChhH
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRPFSDNYT-PT-----TDERYAVNVVDQPGGTKKTVVLREIPEEA 346 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t-----~~~~~~~~~v~~~~~~~~~~i~d~~G~e~ 346 (430)
++++|.||||||||||+|++.....+.. +. ..++.....+.++++. .++||||-..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~ 269 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVRE 269 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCc
Confidence 7899999999999999999875433221 11 1123333445555332 4789998543
No 416
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.47 E-value=0.00025 Score=59.21 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHH
Q 014101 59 LKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLH 125 (430)
Q Consensus 59 l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~ 125 (430)
..=+|+++|-|+|++|-.++|...+.++-...++++|+..|.+.+-+. +|.+++| ++|.+|-.+.
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieE--AD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEE--ADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH--hcCCCCCcccHHHHHHHH
Confidence 346899999999999999999999999888899999999887776433 2788999 9999998874
No 417
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.47 E-value=0.00063 Score=75.14 Aligned_cols=111 Identities=15% Similarity=0.263 Sum_probs=85.6
Q ss_pred cccCCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCC--CHH-----HHHHHHHHHHhhhcCCccCCC-cC
Q 014101 46 QESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPL--QPS-----EIVGVKRVVQEKLREGVNERG-LT 117 (430)
Q Consensus 46 ~~~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~--~~~-----e~~~i~~~~~~~~~~d~~~~g-i~ 117 (430)
+.....|+++.+++.-+|+.||++++|.|+..+++.+++. .|..+ -++ ++++++..+ |.+.+| |+
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrs-lgY~lpmvEe~~~~p~fe~~ld~v------DP~r~G~Vs 2314 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRS-LGYDLPMVEEGEPEPEFEEILDLV------DPNRDGYVS 2314 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHh-cCCCCcccccCCCChhHHHHHHhc------CCCCcCccc
Confidence 4456689999999999999999999999999999999876 46655 333 789999998 567888 99
Q ss_pred HHhHHHHHHHHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCH
Q 014101 118 LAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRP 197 (430)
Q Consensus 118 ~~eFl~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~ 197 (430)
..+|++.|-. +... + -+|.+ .+..||+..|. |..|++.
T Consensus 2315 l~dY~afmi~---~ETe----------------------------N-------I~s~~---eIE~AfraL~a-~~~yvtk 2352 (2399)
T KOG0040|consen 2315 LQDYMAFMIS---KETE----------------------------N-------ILSSE---EIEDAFRALDA-GKPYVTK 2352 (2399)
T ss_pred HHHHHHHHHh---cccc----------------------------c-------ccchH---HHHHHHHHhhc-CCccccH
Confidence 9999987631 1000 0 11222 36689999999 9999999
Q ss_pred HHHHHhhc
Q 014101 198 IEVEDLFS 205 (430)
Q Consensus 198 ~el~~~~~ 205 (430)
+++..-|.
T Consensus 2353 e~~~~~lt 2360 (2399)
T KOG0040|consen 2353 EELYQNLT 2360 (2399)
T ss_pred HHHHhcCC
Confidence 99965543
No 418
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.44 E-value=0.00026 Score=66.62 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=35.6
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCc------CCCccceEEEEEEEcCCCeEEEEEEeCCChhH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNY------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA 346 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~ 346 (430)
.++++|.+|||||||+|++.+.....+. .....++.....+.+.++ .++||+|-..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 6899999999999999999976533221 111112223334444432 6899999644
No 419
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.43 E-value=0.00035 Score=66.90 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=57.0
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCC---------------eEEEEEEeCCCh----
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG---------------TKKTVVLREIPE---- 344 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~---------------~~~~~i~d~~G~---- 344 (430)
+.+++.+||.||||||||+|.++.........|..+.+.....+.++.. ...+.++|.+|-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4579999999999999999999998877665565554444444444321 124558888762
Q ss_pred ----hHHHhhhccccccccccEEEEEEECC
Q 014101 345 ----EAVAKLLSNKDSLAACDIAVFVHDSS 370 (430)
Q Consensus 345 ----e~~~~~~~~~~~~~~ad~vilv~D~t 370 (430)
..-+.+ ...+|.+|+++-|+++.
T Consensus 99 s~G~GLGN~F---Ls~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKF---LSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHH---HHhhhhccceeEEEEec
Confidence 111222 25678999999998854
No 420
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.40 E-value=0.00018 Score=72.21 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
+..+.|.+||.|||||||+||.+.|.+....+ .|.|.+....++.+. ..+.+.|++|-
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls---~~v~LCDCPGL 369 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLS---PSVCLCDCPGL 369 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcC---CCceecCCCCc
Confidence 34689999999999999999999999876665 566766666777766 23456788885
No 421
>PRK13796 GTPase YqeH; Provisional
Probab=97.36 E-value=0.00034 Score=69.78 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=37.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCC----CCCcCCCccceEEEEEEEcCCCeEEEEEEeCCCh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPF----SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~----~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~ 344 (430)
.+++++|.+|||||||+|++.+... ..+..+..|++.....+.++++ ..++||+|-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431 1111233444455555666533 368999995
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.33 E-value=0.00044 Score=66.65 Aligned_cols=68 Identities=18% Similarity=0.009 Sum_probs=50.1
Q ss_pred ccccccccEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCcc
Q 014101 354 KDSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~-S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~ 428 (430)
+..+.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+||.+.. .......+....|.++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~------~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g~~v 141 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA------GIEPVIVLTKADLLDDE-EEELELVEALALGYPV 141 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc------CCCEEEEEEHHHCCChH-HHHHHHHHHHhCCCeE
Confidence 45678999999999999988 888999998877653 68999999999997642 1122233344466554
No 423
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.33 E-value=6e-05 Score=61.88 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCC-CcccccccccCCcccchhhHHhh
Q 014101 178 DFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDE-APYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 178 ~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~-~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
..+.=.|...|+|+||.|+..||+.+.... ..+..+ ..|++.+|.|+||.||+.||..+
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 345568999999999999999999987743 112222 45789999999999999999763
No 424
>PRK00098 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00043 Score=67.12 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=48.4
Q ss_pred cccccccEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCccc
Q 014101 355 DSLAACDIAVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S~~~-~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~f 429 (430)
....++|++++|+|++++.++.. +.+|+..+... ++|+++|+||+|+.+.........++.+.+|++++
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~------~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~ 145 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN------GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVL 145 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC------CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEE
Confidence 34689999999999998876554 57777766542 68999999999997432223334455566676543
No 425
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.31 E-value=0.0016 Score=60.41 Aligned_cols=88 Identities=23% Similarity=0.207 Sum_probs=53.3
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCC--CCCCCcC---CCccceEEEEEEEcC-CCeEEEEEEeCCChhHHHh---hh-c
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDNYT---PTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAK---LL-S 352 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~--~~~~~~~---~t~~~~~~~~~v~~~-~~~~~~~i~d~~G~e~~~~---~~-~ 352 (430)
.+..-|.|+|++++|||+|+|++++. .|..... -|.|. .....+.. +....++++||.|-..... .. .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi--~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI--WMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccce--EEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 45678999999999999999999998 6654432 13332 22222221 2346788999988532111 00 0
Q ss_pred ccccccc--ccEEEEEEECCCh
Q 014101 353 NKDSLAA--CDIAVFVHDSSDE 372 (430)
Q Consensus 353 ~~~~~~~--ad~vilv~D~t~~ 372 (430)
....+.. ++++|+..+.+..
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 0122223 7888887776643
No 426
>PF14658 EF-hand_9: EF-hand domain
Probab=97.29 E-value=6.3e-05 Score=54.70 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=48.5
Q ss_pred HHHHHhcCCCCCCCCHHHHHHhhccCCC-CC--CCCCcccccccccCC-cccchhhHHhhh
Q 014101 182 GIFELFDADDDNSLRPIEVEDLFSTAPE-CP--WDEAPYKDAAEKTAL-GGLSLDGFLSEW 238 (430)
Q Consensus 182 ~~F~~fD~d~dG~is~~el~~~~~~~~~-~~--~~~~~~~~~~d~~~d-g~i~~~ef~~~w 238 (430)
.+|++||.++.|.|...+|...+..+++ .| ++.+.+.++.|.++. |.|+|+.|+.-.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 3799999999999999999999998766 66 334567789999888 999999998653
No 427
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0028 Score=60.85 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=69.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCC----CCCCcCC---CccceEEEEEEEc-------CCCeEEEEEEeCCChhHHH
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRP----FSDNYTP---TTDERYAVNVVDQ-------PGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~----~~~~~~~---t~~~~~~~~~v~~-------~~~~~~~~i~d~~G~e~~~ 348 (430)
+..+++.++|.-.+|||+|.+++..-. |.....+ .++.+.....+.+ .+....+.++|.+|+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345899999999999999999996432 2111111 1122221122222 1234556789999985543
Q ss_pred hhhccccccccccEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCc
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA 413 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~ 413 (430)
... ..-..-.|..++|+|+..-..-+..+. .+-++. -...|+|.||+|...+...
T Consensus 85 Rti--iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--------c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 85 RTI--IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--------CKKLVVVINKIDVLPENQR 140 (522)
T ss_pred HHH--HhhhheeeeeeEEEehhcccccccchhhhhhhhh--------ccceEEEEeccccccchhh
Confidence 322 233345689999999875322222222 222332 2357888899998775333
No 428
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.27 E-value=0.0012 Score=57.63 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHhCCC
Q 014101 288 CFVFGPKKAGKSVLLNSFLGRP 309 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~~~ 309 (430)
++++|..|+|||||++++....
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6799999999999999998653
No 429
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.27 E-value=0.00057 Score=68.19 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 54 RCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 54 ~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
.....++.+|+.||+|+||.|+.+|+.. .+.++..+ |.|++| |+++||...+.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~------D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDAL------DLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHh------CCCCCCCCcHHHHHHHHH
Confidence 3456889999999999999999999831 45677777 788999 99999999765
No 430
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.25 E-value=0.00055 Score=68.14 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCC----CcCCCccceEEEEEEEcCCCeEEEEEEeCCChh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSD----NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE 345 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~----~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e 345 (430)
.+|+++|.+|||||||+|++++..... ...+..+++.....+.++++ ..++||+|-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 589999999999999999999754311 11233344444455555422 3589999953
No 431
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.19 E-value=0.0007 Score=64.54 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=35.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCC------CcCCCccceEEEEEEEcCCCeEEEEEEeCCChhH
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSD------NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA 346 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~------~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~ 346 (430)
-.+++|.+|||||||+|++....... .......++.....+.++++. .++||+|-..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 57899999999999999998743221 111122233344566665222 4679988643
No 432
>PRK12289 GTPase RsgA; Reviewed
Probab=97.17 E-value=0.00093 Score=66.04 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.6
Q ss_pred ccccccccEEEEEEECCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~-S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
...+.++|.+++|+|++++. +...+..|+..+... ++|+++|+||+||.+
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~------~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAEST------GLEIVLCLNKADLVS 134 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHC------CCCEEEEEEchhcCC
Confidence 45678999999999999876 556778888766432 689999999999975
No 433
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0014 Score=59.97 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=72.7
Q ss_pred eEEEEeCCCCC--CHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeE----EEEEEeCCChhHHHhhhcccccccc
Q 014101 286 FQCFVFGPKKA--GKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTK----KTVVLREIPEEAVAKLLSNKDSLAA 359 (430)
Q Consensus 286 ~kI~vvG~~~v--GKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~----~~~i~d~~G~e~~~~~~~~~~~~~~ 359 (430)
.-++|+|-+|| ||-+|+.++....|...+.+...+.+.. +++++... .+-|.... .+.+. ++......
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishic-de~~l---pn~~~a~p 78 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHIC-DEKFL---PNAEIAEP 78 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeeccc-chhcc---CCcccccc
Confidence 36789999999 9999999999988877664444444432 33332111 11121111 11211 22334455
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 360 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 360 ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
..+++.|||++....+..+..|+..-.-+. ---.+.+|||.|....-
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdins-----fdillcignkvdrvphh 125 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDINS-----FDILLCIGNKVDRVPHH 125 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhcccccccc-----chhheecccccccccch
Confidence 678999999999999999999975422221 12357889999997753
No 434
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0059 Score=63.58 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=69.7
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcC-CCccceE---------------------------------------
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERY--------------------------------------- 322 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~-~t~~~~~--------------------------------------- 322 (430)
+...||++.|+.+.||||++|+++..+.-+... +++..-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 455799999999999999999998776543321 2211100
Q ss_pred ---EEEEEEcCCCe-----EEEEEEeCCCh---hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCC
Q 014101 323 ---AVNVVDQPGGT-----KKTVVLREIPE---EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED 391 (430)
Q Consensus 323 ---~~~~v~~~~~~-----~~~~i~d~~G~---e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~ 391 (430)
..-.+-++++. ..+.++|.+|- ....+.. .....++|++|+|.++.+.-+..+ ..++....+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswi--d~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWI--DSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHH--HHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---
Confidence 00011122110 11234566663 2223223 567789999999999876433333 3444444432
Q ss_pred CCCCCcEEEEEeCCCCCCc
Q 014101 392 TGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 392 ~~~~~PiilVgnK~Dl~~~ 410 (430)
+..++++.||.|....
T Consensus 261 ---KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 ---KPNIFILNNKWDASAS 276 (749)
T ss_pred ---CCcEEEEechhhhhcc
Confidence 3457888999998774
No 435
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.13 E-value=0.00044 Score=67.52 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=41.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCC
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 343 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G 343 (430)
+..+++.|+|-|||||||+||++......... ++.|.+...+.+.++ ..+-++|.+|
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ld---k~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLD---KKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheecc---CCceeccCCc
Confidence 56789999999999999999999988764443 455555555666666 2344566666
No 436
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.11 E-value=0.0018 Score=64.94 Aligned_cols=72 Identities=29% Similarity=0.348 Sum_probs=59.2
Q ss_pred cCCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHH
Q 014101 48 SQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPL---QPSEIVGVKRVVQEKLREGVNERG-LTLAGFLF 123 (430)
Q Consensus 48 ~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~---~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~ 123 (430)
..++|.++.+.|++.|...| |++|+++..||..++.++ +.++ ..+++++++... +.+.+| |+|++|+.
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~g~~~~eei~~~l~~~------~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPLGYFVREEIKEILGEV------GVDADGRVEFEEFVG 81 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccccchhHHHHHHHHhcc------CCCcCCccCHHHHHH
Confidence 57899999999999999999 999999999999997764 3333 466666666665 677888 99999999
Q ss_pred HHHH
Q 014101 124 LHAL 127 (430)
Q Consensus 124 ~~~~ 127 (430)
++..
T Consensus 82 ~~~~ 85 (627)
T KOG0046|consen 82 IFLN 85 (627)
T ss_pred HHHh
Confidence 7543
No 437
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.11 E-value=0.0069 Score=61.40 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=53.0
Q ss_pred CeEEEEEEeCCCh-------------hHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcE
Q 014101 332 GTKKTVVLREIPE-------------EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC 398 (430)
Q Consensus 332 ~~~~~~i~d~~G~-------------e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pi 398 (430)
+...+.++|.+|- +....+. ..++.+.++||+|+--. |.+.-+.....+.....+. +...
T Consensus 410 gLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~ms--KayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~--GrRT 482 (980)
T KOG0447|consen 410 GLQRMVLVDLPGVINTVTSGMAPDTKETIFSIS--KAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPH--GRRT 482 (980)
T ss_pred CcceeEEecCCchhhhhcccccccchHHHHHHH--HHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCC--CCee
Confidence 4566778887772 3344444 78899999999997533 3333333334444444332 5678
Q ss_pred EEEEeCCCCCCcc-CcHHHHHHHHH
Q 014101 399 LIVAAKDDLDSFA-MAIQDSTRVFT 422 (430)
Q Consensus 399 ilVgnK~Dl~~~~-v~~~~~~~~~~ 422 (430)
|+|.+|.|+.++. ..+..++++.+
T Consensus 483 IfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 483 IFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred EEEEeecchhhhccCCHHHHHHHHh
Confidence 9999999998864 33555555543
No 438
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.07 E-value=0.00092 Score=57.16 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=43.2
Q ss_pred cccccccEEEEEEECCChhhHH--HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 355 DSLAACDIAVFVHDSSDESSWK--RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S~~--~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
..+..+|++++|+|+.++.+.. .+.+|+.... .+.|+++|.||+|+.++.. .....++.++.+..
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-------~~k~~iivlNK~DL~~~~~-~~~~~~~~~~~~~~ 73 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-------PRKKNILLLNKADLLTEEQ-RKAWAEYFKKEGIV 73 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-------CCCcEEEEEechhcCCHHH-HHHHHHHHHhcCCe
Confidence 5678999999999999876543 4555554431 1589999999999965322 22334445555543
No 439
>PRK00098 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.0012 Score=64.09 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=35.2
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCcCCC----c--cceEEEEEEEcCCCeEEEEEEeCCChh
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT----T--DERYAVNVVDQPGGTKKTVVLREIPEE 345 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t----~--~~~~~~~~v~~~~~~~~~~i~d~~G~e 345 (430)
.++++|++|||||||+|.+.+.....+..-. . .++.....+.++++ ..++||+|-.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 6899999999999999999977543322100 0 12222344445432 2678998864
No 440
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.03 E-value=0.0019 Score=64.45 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhhh
Q 014101 177 IDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWA 239 (430)
Q Consensus 177 ~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~ 239 (430)
+..++.+|+.||.||||.|+.+||..+ ..++..+|.|+||.|+++||.....
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~~-----------~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLGS-----------DAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHHH-----------HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 455889999999999999999999642 1245578999999999999998644
No 441
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.97 E-value=0.0017 Score=58.43 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHH
Q 014101 347 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 421 (430)
Q Consensus 347 ~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~ 421 (430)
+..++ ..+++++|++++|+|++++.. .|...+.... .+.|+++|+||+|+............++
T Consensus 24 ~~~~l--~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~----~~~~~ilV~NK~Dl~~~~~~~~~~~~~~ 87 (190)
T cd01855 24 ILNLL--SSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG----GNNPVILVGNKIDLLPKDKNLVRIKNWL 87 (190)
T ss_pred HHHHH--HhcccCCcEEEEEEECccCCC-----ccchhHHHhc----CCCcEEEEEEchhcCCCCCCHHHHHHHH
Confidence 46666 678899999999999987542 1222221111 2589999999999976555444455554
No 442
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.0024 Score=59.47 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=70.5
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCC--ccceEEEEEEEc--CCCeEEEEEEeCCCh---------------
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT--TDERYAVNVVDQ--PGGTKKTVVLREIPE--------------- 344 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t--~~~~~~~~~v~~--~~~~~~~~i~d~~G~--------------- 344 (430)
-.++|+-||.+|.|||||+..+.+..+.....+- .++.....+.++ .+-..++.+++|+|-
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 4589999999999999999999999886654321 223333334443 334566778999882
Q ss_pred ---hHHHhhh-------cccccc--ccccEEEEEEECCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 345 ---EAVAKLL-------SNKDSL--AACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 345 ---e~~~~~~-------~~~~~~--~~ad~vilv~D~t~~~S~~~~~~-~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
..|.... .+...+ ...++.++.+..+. .|+..+.- .++.+.. ++.||-|+-|+|-..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds-------kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS-------KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh-------hhhhHHHHHHhhhhh
Confidence 1122211 011122 24567777777764 45555443 2233322 466777778888655
No 443
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.91 E-value=0.013 Score=53.39 Aligned_cols=172 Identities=20% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHH----------------HHHHH-HHhhhcCCcc-CCC-cCHHh
Q 014101 60 KRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIV----------------GVKRV-VQEKLREGVN-ERG-LTLAG 120 (430)
Q Consensus 60 ~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~----------------~i~~~-~~~~~~~d~~-~~g-i~~~e 120 (430)
+--|++-|.||||.|+-+|++.-....-|. +..+.. .+.+. .+++-..|.. .+- +|.+|
T Consensus 143 kthFraVDpdgDGhvsWdEykvkFlaskgh--sekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeE 220 (362)
T KOG4251|consen 143 KTHFRAVDPDGDGHVSWDEYKVKFLASKGH--SEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEE 220 (362)
T ss_pred hhheeeeCCCCCCceehhhhhhHHHhhcCc--chHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHH
Confidence 345899999999999999987543333333 222221 11111 1111111111 123 77799
Q ss_pred HHHHHHH-HHHcCCchhHHHHHHhhcCCCCcccc-cccC--CCCcccCCCCCccccCH-HHHHHHHHHHHHhcCCCCCCC
Q 014101 121 FLFLHAL-FIEKGRLETTWTVLRKFGYNNDIKLA-DELI--PYSAFKRAPDQSVELTN-EAIDFLKGIFELFDADDDNSL 195 (430)
Q Consensus 121 Fl~~~~~-~~~~~~~~~~w~~l~~~~y~~~l~~~-~~~~--~~~~~~~~~~~~~~~s~-~~~~~l~~~F~~fD~d~dG~i 195 (430)
|+..... +...+--..+-.+.|.++-|++-.++ ++++ |+.. +.+-+...... ..+..+++.=+..|.|.||.+
T Consensus 221 flsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGT--VenqqgqdiddnwvkdRkkEFeElIDsNhDGiv 298 (362)
T KOG4251|consen 221 FLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGT--VENQQGQDIDDNWVKDRKKEFEELIDSNHDGIV 298 (362)
T ss_pred HHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcc--hhhhhccchHHHHHHHHHHHHHHHhhcCCccce
Confidence 9875332 12112224455678888889888886 4444 3211 11111111111 112234455567799999999
Q ss_pred CHHHHHHhhccCCCCC----CCCCcccccccccCCcccchhhHHhh
Q 014101 196 RPIEVEDLFSTAPECP----WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 196 s~~el~~~~~~~~~~~----~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
|++||...+. |..+ -....++.-.|.|+|-+++.+|.+.+
T Consensus 299 TaeELe~y~d--P~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 299 TAEELEDYVD--PQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred eHHHHHhhcC--chhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 9999998754 3332 12234666789999999999998765
No 444
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0038 Score=60.52 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=77.1
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhCCCCCCCc-----------------------CCCccceEEEEEEEcCC----------
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------------------TPTTDERYAVNVVDQPG---------- 331 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~-----------------------~~t~~~~~~~~~v~~~~---------- 331 (430)
.++++|+|...+|||||+--+..+...... ..+.|.+-.-+.+.+..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 479999999999999999888766543211 01112221112222211
Q ss_pred CeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 332 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 332 ~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
....+.++|.+|+..|....-..-.--..|.+++|+++..--.+. .++.+--+... ++|++++.+|+|+.+++
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL------~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL------NIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh------CCCeEEEEEeeccccch
Confidence 122345789999988775431111112358889999876532221 12222222222 79999999999999875
Q ss_pred Cc---HHHHHHHHHHhCC
Q 014101 412 MA---IQDSTRVFTFLVM 426 (430)
Q Consensus 412 v~---~~~~~~~~~~~g~ 426 (430)
.. ..+...+..+.||
T Consensus 320 ~~~~tv~~l~nll~~~Gc 337 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGC 337 (591)
T ss_pred hHHHHHHHHHHHHhhcCc
Confidence 33 3444444455554
No 445
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.88 E-value=0.0021 Score=62.00 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=37.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcC------CCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~------~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
-.++++|++|||||||+|.+.+........ ....++.....+.++++ ..++||+|-..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 378999999999999999999875433221 11112233344555422 257899987543
No 446
>PRK12288 GTPase RsgA; Reviewed
Probab=96.71 E-value=0.0045 Score=61.16 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=48.1
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccC--cHHHHHHHHHHhCCccc
Q 014101 356 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--AIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 356 ~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v--~~~~~~~~~~~~g~~~f 429 (430)
...++|.+++|++++...++..+..|+..+... ++|+++|+||+|+.+... ......+..+.+|+++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~------~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~ 186 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACETL------GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVL 186 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHhc------CCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 346799999999998888999999998766432 689999999999976321 12222233345565543
No 447
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.69 E-value=0.0033 Score=62.61 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=51.0
Q ss_pred CChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHH--
Q 014101 342 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTR-- 419 (430)
Q Consensus 342 ~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~-- 419 (430)
...+.|..+. ..+.+.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.++.+..+.+.+
T Consensus 48 ~~~e~f~~~l--~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~----~~piilV~NK~DLl~k~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLL--NSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG----GNPVLLVGNKIDLLPKSVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHH--hhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC----CCCEEEEEEchhhCCCCCCHHHHHHHH
Confidence 3567788877 67778999999999997643 223444443321 5799999999999876555444443
Q ss_pred --HHHHhCC
Q 014101 420 --VFTFLVM 426 (430)
Q Consensus 420 --~~~~~g~ 426 (430)
+++++|+
T Consensus 117 ~~~~k~~g~ 125 (360)
T TIGR03597 117 KKRAKELGL 125 (360)
T ss_pred HHHHHHcCC
Confidence 4666665
No 448
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.67 E-value=0.024 Score=57.41 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=37.9
Q ss_pred EEEEEEeCCChhHH-----HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 334 KKTVVLREIPEEAV-----AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 334 ~~~~i~d~~G~e~~-----~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
..++++||+|.... ..+.. .....+.+.+++|.|++-...- ......+... -.+.-+|.||.|-.
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~-i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQ-VAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS------VDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHH-HhhhcCCcEEEEEeccccChhH---HHHHHHHHhc------cCCcEEEEECccCC
Confidence 46789999995322 22211 1123456889999998743221 2222333322 13567889999976
Q ss_pred Cc
Q 014101 409 SF 410 (430)
Q Consensus 409 ~~ 410 (430)
.+
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 53
No 449
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.02 Score=57.05 Aligned_cols=115 Identities=17% Similarity=0.046 Sum_probs=72.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCC---cCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEE
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 363 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~~---~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~v 363 (430)
-|...|.---|||||+..+.+.....- ....++.+........+ ...+-++|.+|++++-.-. ..-+...|.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~m--iag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNL--LAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHH--HhhhcCCceE
Confidence 367788888999999999988764332 22233344433334444 4477899999998776544 4566788999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc
Q 014101 364 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 411 (430)
Q Consensus 364 ilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~ 411 (430)
++|+++++--..+ ..+.+.-+...+ ....++|.||+|+.+..
T Consensus 78 lLvV~~deGl~~q-tgEhL~iLdllg-----i~~giivltk~D~~d~~ 119 (447)
T COG3276 78 LLVVAADEGLMAQ-TGEHLLILDLLG-----IKNGIIVLTKADRVDEA 119 (447)
T ss_pred EEEEeCccCcchh-hHHHHHHHHhcC-----CCceEEEEeccccccHH
Confidence 9999996421111 112222222221 23469999999999854
No 450
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.61 E-value=0.0027 Score=55.13 Aligned_cols=49 Identities=24% Similarity=0.217 Sum_probs=32.9
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 354 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 354 ~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
...++++|++++|+|++++..... ..+...+... +.|+++|+||+|+.+
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~~------~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRS-RKLERYVLEL------GKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHhC------CCcEEEEEEhHHhCC
Confidence 456678999999999987543222 1222222211 579999999999965
No 451
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0052 Score=49.32 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=53.3
Q ss_pred cCCccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhc-----CC---C-CCHHHHHHHHHHHHhhhcCCccCCC-cC
Q 014101 48 SQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCF-----NS---P-LQPSEIVGVKRVVQEKLREGVNERG-LT 117 (430)
Q Consensus 48 ~~~lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~-----g~---~-~~~~e~~~i~~~~~~~~~~d~~~~g-i~ 117 (430)
...+||++.+- .-|...|-|+||+|+--||..++...- |. | .++.|++.|+..+-.+ +|.|++| |+
T Consensus 60 ~a~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~D--dDfN~DG~ID 135 (144)
T KOG4065|consen 60 VAKMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDD--DDFNGDGVID 135 (144)
T ss_pred hhhCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcc--cccCCCceee
Confidence 34567776543 579999999999999999998866531 22 2 3567777777776433 3678999 99
Q ss_pred HHhHHHH
Q 014101 118 LAGFLFL 124 (430)
Q Consensus 118 ~~eFl~~ 124 (430)
|.||+..
T Consensus 136 YgEflK~ 142 (144)
T KOG4065|consen 136 YGEFLKR 142 (144)
T ss_pred HHHHHhh
Confidence 9999853
No 452
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.0049 Score=68.99 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=63.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCC--Cc----CCCccceEEEEEEEcCCCeEEEEEEeCCChh--------HHHhhh-
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFSD--NY----TPTTDERYAVNVVDQPGGTKKTVVLREIPEE--------AVAKLL- 351 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~~--~~----~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e--------~~~~~~- 351 (430)
=-+|||++|+||||++..- +.+|+. .. ....++. .++.- -...-.++||+|.. .-...|
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~----~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTR----NCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCc----ccCcc-cccceEEEcCCcceecccCcchhhHHHHH
Confidence 3689999999999988643 222221 11 0111211 11111 12234567877731 111112
Q ss_pred ------ccccccccccEEEEEEECCChh----hH-----HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 352 ------SNKDSLAACDIAVFVHDSSDES----SW-----KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 352 ------~~~~~~~~ad~vilv~D~t~~~----S~-----~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
......+..++||+..|+.+.- .. ..++.-+.++...-.. ..|+.|+.||.|+..
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~---~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA---RLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc---CCceEEEEecccccc
Confidence 2234456789999999976531 11 1233345555554433 799999999999965
No 453
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0085 Score=57.18 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=79.4
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc---CCCcc-------------------ceEEEE-EEEcCC----CeEE
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---TPTTD-------------------ERYAVN-VVDQPG----GTKK 335 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~---~~t~~-------------------~~~~~~-~v~~~~----~~~~ 335 (430)
.+.++|.++|.-.-|||||.+.+.+--...-+ ...++ ..+... ..+.-| -...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46789999999999999999999865321111 00000 000000 001011 1134
Q ss_pred EEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccC---
Q 014101 336 TVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--- 412 (430)
Q Consensus 336 ~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v--- 412 (430)
+.++|.+|++..-... .+-..-.|++++|+.++.+-.-.+..+.+..+.-.. -..+|+|-||+|+..++.
T Consensus 88 VSfVDaPGHe~LMATM--LsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATM--LSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred EEEeeCCchHHHHHHH--hcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHH
Confidence 5589999998776543 122233599999999987644445555555544333 246899999999988642
Q ss_pred cHHHHHHHHH
Q 014101 413 AIQDSTRVFT 422 (430)
Q Consensus 413 ~~~~~~~~~~ 422 (430)
..+++++|.+
T Consensus 161 ~y~qIk~Fvk 170 (415)
T COG5257 161 NYEQIKEFVK 170 (415)
T ss_pred HHHHHHHHhc
Confidence 2455555543
No 454
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.57 E-value=0.024 Score=50.04 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=45.6
Q ss_pred EEEEEEeCCChhH-----HHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 334 KKTVVLREIPEEA-----VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 334 ~~~~i~d~~G~e~-----~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
..+.++|++|... ...+.. .......+.+++|+|.....+ ..++...+.+.. + ..-+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~-l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-----~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKK-IKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-----G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHH-HHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-----C-CCEEEEECCcCC
Confidence 3467899998632 222210 111234899999999864332 223444443332 2 245777999987
Q ss_pred CccCcHHHHHHHHHHhCCcc
Q 014101 409 SFAMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 409 ~~~v~~~~~~~~~~~~g~~~ 428 (430)
.+. ..+.+.+...|+|+
T Consensus 153 ~~~---g~~~~~~~~~~~p~ 169 (173)
T cd03115 153 ARG---GAALSIRAVTGKPI 169 (173)
T ss_pred CCc---chhhhhHHHHCcCe
Confidence 742 22334666666653
No 455
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0039 Score=57.05 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=69.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh-hhccccccccccEEE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAACDIAV 364 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~-~~~~~~~~~~ad~vi 364 (430)
.+|+++|-..+||||+-+-...+-. ++.....+.+..+..-.+.+....+.+|+.+|+-.+.. .......++.+-+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3699999999999998765544322 21111111111111112222345678999999854332 222245668899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 365 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 365 lv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
+|.|+.+ +-.+.+.+...-+.+..+- .+++.+=|...|.|-..+
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCch
Confidence 9999875 2222333322222222211 247888899999997654
No 456
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.017 Score=55.55 Aligned_cols=138 Identities=13% Similarity=0.071 Sum_probs=88.1
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhC---C----CC---CCCc----CCCccceEEEEEEEcCCCeEEEEEEeCCChhHH
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLG---R----PF---SDNY----TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 347 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~---~----~~---~~~~----~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~ 347 (430)
.++-++|.-||.-.-|||||-..++. . ++ .... ...-|.++....+++.-....+--.|++|+..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34557999999999999999877641 1 11 1100 123355666666766644555667899999877
Q ss_pred HhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCcc----CcHHHHHHHHHH
Q 014101 348 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA----MAIQDSTRVFTF 423 (430)
Q Consensus 348 ~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~----v~~~~~~~~~~~ 423 (430)
-... ..-...-|+.|+|+.++|-..- +.++.+.-.++.. -..+++..||.|+.+++ ...-+++++..+
T Consensus 131 IKNM--ItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVG-----V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 131 IKNM--ITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVG-----VKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHh--hcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcC-----CceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 6543 2444667999999999984322 2233222222222 13478889999999643 226688888888
Q ss_pred hCCc
Q 014101 424 LVMV 427 (430)
Q Consensus 424 ~g~~ 427 (430)
+|++
T Consensus 203 ~gf~ 206 (449)
T KOG0460|consen 203 FGFD 206 (449)
T ss_pred cCCC
Confidence 8863
No 457
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.48 E-value=0.0029 Score=37.05 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVK 85 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~ 85 (430)
+++++|+.+|.|++|.|+..|+..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3688999999999999999999887653
No 458
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.028 Score=55.95 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
-.++++|++||||||++.++..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998864
No 459
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.40 E-value=0.044 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.6
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHh
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFL 306 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~ 306 (430)
-+...|-|-|.||+|||||+..|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 344689999999999999999885
No 460
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.36 E-value=0.0067 Score=58.04 Aligned_cols=112 Identities=14% Similarity=0.255 Sum_probs=57.9
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEE----EEEeCCC--------hhHHHhhh
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKT----VVLREIP--------EEAVAKLL 351 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~----~i~d~~G--------~e~~~~~~ 351 (430)
.+..++++|++|.|||+++++|........ .+ ......+-.++.+.+.... .+.+..| ........
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~-~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DE-DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCC-CC-CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 345799999999999999999997654322 11 1222223333333111100 0111000 01111111
Q ss_pred ccccccccccEEEEEEECC-C--hhhHH---HHHHHHHHHHhcCCCCCCCCcEEEEEeC
Q 014101 352 SNKDSLAACDIAVFVHDSS-D--ESSWK---RATELLVEVASYGEDTGFEVPCLIVAAK 404 (430)
Q Consensus 352 ~~~~~~~~ad~vilv~D~t-~--~~S~~---~~~~~l~~l~~~~~~~~~~~PiilVgnK 404 (430)
...++...+=++++|=- + ..+.. .+..+++.+.+. .++|+|.||++
T Consensus 138 --~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-----L~ipiV~vGt~ 189 (302)
T PF05621_consen 138 --LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-----LQIPIVGVGTR 189 (302)
T ss_pred --HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-----cCCCeEEeccH
Confidence 34567778889999932 1 12233 334444444333 27999999975
No 461
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.037 Score=57.23 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.6
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhC
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
.-.|+|+|++|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 462
>PRK13695 putative NTPase; Provisional
Probab=96.32 E-value=0.02 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
+||++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998643
No 463
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.32 E-value=0.0014 Score=53.82 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHH
Q 014101 51 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLF 123 (430)
Q Consensus 51 lt~~~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~ 123 (430)
........+.--|..+|+|+||.|+..||..+.. .+ ...+.=+..+++.- |.|++| |++.||..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~-~l--~~~e~C~~~F~~~C------D~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRR-PL--MPPEHCARPFFRSC------DVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS-TT--STTGGGHHHHHHHH-------TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH-HH--hhhHHHHHHHHHHc------CCCCCCCCCHHHHcc
Confidence 4555678999999999999999999999987732 22 23444577777776 678888 99999964
No 464
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.28 E-value=0.0054 Score=54.70 Aligned_cols=60 Identities=25% Similarity=0.195 Sum_probs=34.6
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 358 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 358 ~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
-..+.++.|+|+.+-.....+...+...... -=++|.||+|+.+.....+..++..++++
T Consensus 112 ~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--------ADvIvlnK~D~~~~~~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 112 FRLDSIITVVDATNFDELENIPELLREQIAF--------ADVIVLNKIDLVSDEQKIERVREMIRELN 171 (178)
T ss_dssp ESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---------SEEEEE-GGGHHHH--HHHHHHHHHHH-
T ss_pred ccccceeEEeccccccccccchhhhhhcchh--------cCEEEEeccccCChhhHHHHHHHHHHHHC
Confidence 3458899999997643333343333333222 23688999999886533466666666654
No 465
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.27 E-value=0.00092 Score=53.92 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCCCCCCcccccccccCCcccchhhHHhhhhhh
Q 014101 172 LTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 241 (430)
Q Consensus 172 ~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~ 241 (430)
++++..+...++|+..| .++|.|+-++.+.+|...+........+-.-+|.|.||.++++||+-...+.
T Consensus 4 ls~~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34556677889999998 4789999999999998643221111223356999999999999999876655
No 466
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.27 E-value=0.0074 Score=57.43 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred hccCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc----CCCccceEEEEE-EEcCCCeEEEEEEeCCCh
Q 014101 280 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----TPTTDERYAVNV-VDQPGGTKKTVVLREIPE 344 (430)
Q Consensus 280 ~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~----~~t~~~~~~~~~-v~~~~~~~~~~i~d~~G~ 344 (430)
++....+.+.|+|-||||||||||.+......... .+..|++..+.. +.+. ....+.++||+|-
T Consensus 138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 138 RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 44567789999999999999999988654332221 123333333332 3333 2334667899884
No 467
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.27 E-value=0.015 Score=41.07 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=27.6
Q ss_pred ccEEEEEEECCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 360 CDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 360 ad~vilv~D~t~~--~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
.++|+|++|++.. -|.++-...+++++..- .+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F----~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF----PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT----TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc----CCCCEEEEEeccC
Confidence 5899999999864 35566566777777654 2689999999998
No 468
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.012 Score=62.03 Aligned_cols=114 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhCCCCCCCc--------------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHH
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY--------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 348 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~--------------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~ 348 (430)
+..-+++++..-.-|||||+..++...-...+ ..+-|.+.....+..--+...+.++|++|+-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45568899999999999999999765432211 0122222222223332245667799999999999
Q ss_pred hhhccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCC
Q 014101 349 KLLSNKDSLAACDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 408 (430)
Q Consensus 349 ~~~~~~~~~~~ad~vilv~D~t~~---~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~ 408 (430)
+.. ....+-+|++++.+|+..- ++..-++ +.... +..+++|.||+|..
T Consensus 87 sev--ssas~l~d~alvlvdvvegv~~qt~~vlr----q~~~~------~~~~~lvinkidrl 137 (887)
T KOG0467|consen 87 SEV--SSASRLSDGALVLVDVVEGVCSQTYAVLR----QAWIE------GLKPILVINKIDRL 137 (887)
T ss_pred hhh--hhhhhhcCCcEEEEeeccccchhHHHHHH----HHHHc------cCceEEEEehhhhH
Confidence 877 4566779999999998642 2222222 22221 35678999999953
No 469
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.23 E-value=0.0057 Score=53.19 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=34.5
Q ss_pred cccccccEEEEEEECCChhh--HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCc
Q 014101 355 DSLAACDIAVFVHDSSDESS--WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 410 (430)
Q Consensus 355 ~~~~~ad~vilv~D~t~~~S--~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~ 410 (430)
..+.++|++++|.|++++.. ...+..++.. .. .+.|+++|.||+|+.++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~~----~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---EK----PHKHLIFVLNKCDLVPT 54 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh---cc----CCCCEEEEEEchhcCCH
Confidence 45689999999999998632 2334444332 11 15899999999999753
No 470
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.18 E-value=0.013 Score=58.54 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhccC-C--CCCCCCCcccccccccCCcccchhhHHhhhhhhhhc
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFSTA-P--ECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLL 244 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~~~-~--~~~~~~~~~~~~~d~~~dg~i~~~ef~~~w~~~~~~ 244 (430)
-+++|+..|+.++|+||.=+++++|-.. + ..|.-.+.+..-+..+..-.+||--|.+.-++.+-.
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~m 248 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNM 248 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhH
Confidence 4579999999999999999999988652 1 122212223322222223356777666665554433
No 471
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.09 E-value=0.03 Score=54.76 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
=.+|.|--|+|||||+|+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4577899999999999999854
No 472
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.032 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCCHHHHHHHHhC
Q 014101 283 RNVFQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 283 ~~~~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
+..+||+|-|+|||||||++.++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999998863
No 473
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.05 E-value=0.0067 Score=59.31 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=65.9
Q ss_pred hhhhcCHHHHHHHHHHhc--CCCCcchhhHHhhH------HHHHHhhh--hccCceeEEEEeCCCCCCHHHHHHHHhCCC
Q 014101 240 LMTLLDPARSVENLIYIG--YPGDPSSAIRVTRK------RRIDRKKQ--QAERNVFQCFVFGPKKAGKSVLLNSFLGRP 309 (430)
Q Consensus 240 ~~~~~~~~~~~~~l~y~G--~~~~~~~a~~~t~~------r~~~~~~~--~~~~~~~kI~vvG~~~vGKSSLi~~l~~~~ 309 (430)
..-+++-..+.+|+..+. |+.....|- ++++ -..-++.. ...+..+-|.+||.||+||||+||.+...+
T Consensus 253 KvDLVPtwvt~~Wv~~lSkeyPTiAfHAs-i~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 253 KVDLVPTWVTAKWVRHLSKEYPTIAFHAS-INNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred ccccccHHHHHHHHHHHhhhCcceeeehh-hcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc
Confidence 344566778888888875 332211110 1110 00111111 234667899999999999999999998887
Q ss_pred CCCCcCCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhh
Q 014101 310 FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESS 374 (430)
Q Consensus 310 ~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S 374 (430)
....- |..|.+..-..+.+- ..+.++|++|--.-..-...... ..+|+-|=.+++|+.
T Consensus 332 VCkvA-PIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~iv---LkGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 332 VCKVA-PIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIV---LKGVVRVENVKNPED 389 (572)
T ss_pred ccccc-CCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHH---hhceeeeeecCCHHH
Confidence 65443 444432211112222 23456777774111100000011 246667777777654
No 474
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.03 E-value=0.046 Score=52.25 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.3
Q ss_pred eeEEEEeCCCCCCHHHHHHHHh
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFL 306 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~ 306 (430)
.-.|+++|++||||||.+..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3467888999999999887775
No 475
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.02 E-value=0.0067 Score=35.38 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 180 LKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 180 l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
++.+|+.+|.|++|.|+.+||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 568999999999999999999988753
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.99 E-value=0.0054 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.049 Score=48.48 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=47.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCCCCCCcCCCccceEEEEEEEcCCCeEEEEE--EeCCChhH-HHhhhccccccccccE
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVV--LREIPEEA-VAKLLSNKDSLAACDI 362 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i--~d~~G~e~-~~~~~~~~~~~~~ad~ 362 (430)
-.++++|++|+|||||++.+.+-.. |+.|. +.+++....+.. ....|.+. --.+. ...+.+.++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~la--ral~~~p~l 92 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-----PNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIA--AALLRNATF 92 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-----CCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHH--HHHhcCCCE
Confidence 4789999999999999999987643 22221 112211111110 01233322 22222 455566665
Q ss_pred EEE--EEECCChhhHHHHHHHHHHHHh
Q 014101 363 AVF--VHDSSDESSWKRATELLVEVAS 387 (430)
Q Consensus 363 vil--v~D~t~~~S~~~~~~~l~~l~~ 387 (430)
+++ -...-|+.+-..+.+++.++..
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~ 119 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSE 119 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 555 1112345666677777777654
No 478
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.0057 Score=56.66 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPF 310 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~ 310 (430)
-|.++|++|||||||++-+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999987654
No 479
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.91 E-value=0.043 Score=53.72 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=80.6
Q ss_pred cCceeEEEEeCCCCCCHHHHHHHHhCCCCCCCcCC----------------CccceEEEEEEEc------C---------
Q 014101 282 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP----------------TTDERYAVNVVDQ------P--------- 330 (430)
Q Consensus 282 ~~~~~kI~vvG~~~vGKSSLi~~l~~~~~~~~~~~----------------t~~~~~~~~~v~~------~--------- 330 (430)
.+.-+.|.+.|.-+.|||||+-.+..+......-. +....+.+..+.- .
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35568999999999999999988887765433211 1112222222111 0
Q ss_pred ----CCeEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 014101 331 ----GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDD 406 (430)
Q Consensus 331 ----~~~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~D 406 (430)
.......++|+.|+|.+-...-..-.-.+.|-.++++.+++--+-. -++.+--+.. . ..|+++|.+|+|
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a-~-----~lPviVvvTK~D 266 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA-M-----ELPVIVVVTKID 266 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh-h-----cCCEEEEEEecc
Confidence 0113446899999998776432223346789999999988632221 1122221221 1 689999999999
Q ss_pred CCCccCc---HHHHHHHHHH
Q 014101 407 LDSFAMA---IQDSTRVFTF 423 (430)
Q Consensus 407 l~~~~v~---~~~~~~~~~~ 423 (430)
+.++..- .+++.++.+.
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~ 286 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKR 286 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 9886322 4455555444
No 480
>PRK08118 topology modulation protein; Reviewed
Probab=95.90 E-value=0.0064 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
.||+|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999988754
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.87 E-value=0.048 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.5
Q ss_pred eeEEEEeCCCCCCHHHHHHHHhC
Q 014101 285 VFQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 285 ~~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
.--|+++|++|+||||++..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999888753
No 482
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.81 E-value=0.03 Score=43.10 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhhcCCccCCCcCHHhHHHHH
Q 014101 58 ALKRIFILCDHDRDGALSDAELNDFQVKCFNS-PLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLH 125 (430)
Q Consensus 58 ~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~-~~~~~e~~~i~~~~~~~~~~d~~~~gi~~~eFl~~~ 125 (430)
+++.+|..+-. +.+.||.++|..|++..=|. .++.+++..|+..+..... .....++++++|...+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~-~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDER-NRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHH-HHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchh-hcccCCcCHHHHHHHH
Confidence 47899999944 89999999999999877565 4789999999999854431 1223449999999874
No 483
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.80 E-value=0.0067 Score=60.98 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=53.2
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhccCCCCC-----CCCCcccccccccCCcccchhhHHhh
Q 014101 171 ELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP-----WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 171 ~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~~~~~~-----~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
.++.+....|++.|...| |++|+++..||.++|+...... .....++.+.+.|.+|.|+|++|+..
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGI 82 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence 556667778999999999 9999999999999998642211 11235668999999999999999985
No 484
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.79 E-value=0.022 Score=54.13 Aligned_cols=136 Identities=8% Similarity=0.022 Sum_probs=87.6
Q ss_pred CCccHH-HHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCccCCC-cCHHhHHHHHH
Q 014101 49 QALKPR-CVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG-LTLAGFLFLHA 126 (430)
Q Consensus 49 ~~lt~~-~~~~l~~~F~~~D~d~dG~is~~El~~~~~~~~g~~~~~~e~~~i~~~~~~~~~~d~~~~g-i~~~eFl~~~~ 126 (430)
..|... -++.|-+-=..--.-+.|.|-..|+..- +..+.+ .-++.++..+ |.+++| ++|-|..-..+
T Consensus 218 lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~----l~vpvs-d~l~~~f~LF------de~~tg~~D~re~v~~la 286 (412)
T KOG4666|consen 218 LKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVN----LRVPVS-DKLAPTFMLF------DEGTTGNGDYRETVKTLA 286 (412)
T ss_pred cCCChHHHHHHHhhHHHHHHhccCCCcceeEeeee----eecchh-hhhhhhhhee------cCCCCCcccHHHHhhhhe
Confidence 344433 2344544444445567788888887543 334444 4456677777 556777 88888754321
Q ss_pred HHHHcCCchhHHHHHHhhcCCCCcccccccCCCCcccCCCCCccccCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhhcc
Q 014101 127 LFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 206 (430)
Q Consensus 127 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~F~~fD~d~dG~is~~el~~~~~~ 206 (430)
. + +.. +....-+.-+|++||.+-||.+..++|--++++
T Consensus 287 v-----------------------------l-------c~p------~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 287 V-----------------------------L-------CGP------PVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred e-----------------------------e-------eCC------CCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 0 1 000 011122556999999999999999999999987
Q ss_pred CCCCC-CCCCcccccccccCCcccchhhHHhh
Q 014101 207 APECP-WDEAPYKDAAEKTALGGLSLDGFLSE 237 (430)
Q Consensus 207 ~~~~~-~~~~~~~~~~d~~~dg~i~~~ef~~~ 237 (430)
.-+.+ .+...+..+.+...||+|++++|-..
T Consensus 325 ~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~f 356 (412)
T KOG4666|consen 325 VLGVEVLRVPVLFPSIEQKDDPKIYASNFRKF 356 (412)
T ss_pred hcCcceeeccccchhhhcccCcceeHHHHHHH
Confidence 54444 34445677888889999999998765
No 485
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.046 Score=55.25 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCCHHHHHHHHhC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~ 307 (430)
-.|+++|++||||||++..+.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999997764
No 486
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.77 E-value=0.016 Score=50.34 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=29.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHhcCCCCCCCCcEEEEEeCCCCCC
Q 014101 361 DIAVFVHDSSDESSWKRATELLV-EVASYGEDTGFEVPCLIVAAKDDLDS 409 (430)
Q Consensus 361 d~vilv~D~t~~~S~~~~~~~l~-~l~~~~~~~~~~~PiilVgnK~Dl~~ 409 (430)
|++++|+|+.++.+... .++. ...... +.|+++|.||+|+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~-----~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEK-----GKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcC-----CCCEEEEEechhcCC
Confidence 78999999988765442 2333 222221 689999999999965
No 487
>PRK07261 topology modulation protein; Provisional
Probab=95.74 E-value=0.008 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHhCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
+|+|+|.+|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 488
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.72 E-value=0.11 Score=51.74 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=38.1
Q ss_pred EEEEEEeCCChhHHHhhh--ccccccc--cccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEeCCCCC
Q 014101 334 KKTVVLREIPEEAVAKLL--SNKDSLA--ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAAKDDLD 408 (430)
Q Consensus 334 ~~~~i~d~~G~e~~~~~~--~~~~~~~--~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~Pi-ilVgnK~Dl~ 408 (430)
..+.++||+|...+.... .-..++. ...-+.+|++++. ....+.+.+..+.. +|+ =++.||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~--------~~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL--------FPIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc--------CCcceeEEEccccc
Confidence 356789999964333221 0012222 3355677888873 45566666666653 332 4678999965
Q ss_pred C
Q 014101 409 S 409 (430)
Q Consensus 409 ~ 409 (430)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 4
No 489
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.0084 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGR 308 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~ 308 (430)
.||+|+|+||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.65 E-value=0.008 Score=51.05 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.4
Q ss_pred EEEeCCCCCCHHHHHHHHhC
Q 014101 288 CFVFGPKKAGKSVLLNSFLG 307 (430)
Q Consensus 288 I~vvG~~~vGKSSLi~~l~~ 307 (430)
|+++|+||||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 491
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.013 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPFS 311 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~~ 311 (430)
.++++|++|||||||++.+.+-+..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 6899999999999999999776543
No 492
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.01 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP 309 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~ 309 (430)
.=+++.|++|||||||++++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999876
No 493
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.46 E-value=0.17 Score=49.41 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=33.8
Q ss_pred cccEEEEEEECCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhC
Q 014101 359 ACDIAVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 425 (430)
Q Consensus 359 ~ad~vilv~D~t~~~S~~~-~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g 425 (430)
..|+++-|+|+.+-..-.. +.+....-... -=++|.||.|+.+... .+..++..++++
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivlNK~Dlv~~~~-l~~l~~~l~~ln 174 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVLNKTDLVDAEE-LEALEARLRKLN 174 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEEecccCCCHHH-HHHHHHHHHHhC
Confidence 4588999999876333222 23322222221 2378899999998542 445555555554
No 494
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.0029 Score=61.96 Aligned_cols=132 Identities=14% Similarity=0.014 Sum_probs=80.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC--------CCCCc--------CCCccceEEEEEEEcCCCeEEEEEEeCCChhHHHh
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP--------FSDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK 349 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~--------~~~~~--------~~t~~~~~~~~~v~~~~~~~~~~i~d~~G~e~~~~ 349 (430)
-+|.|+..-.+||||...|++.-. ..... ....|.+.....+.++=...++.++||+|+-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 478888899999999988875221 11100 00112233333344333346778899999988775
Q ss_pred hhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCc
Q 014101 350 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 427 (430)
Q Consensus 350 ~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~ 427 (430)
-. ...++-.|+++.|||.+---.-+.+.-|-. ..+ -++|.+...||+|.....- ......+-+++|+.
T Consensus 118 ev--erclrvldgavav~dasagve~qtltvwrq----adk---~~ip~~~finkmdk~~anf-e~avdsi~ekl~ak 185 (753)
T KOG0464|consen 118 EV--ERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADK---FKIPAHCFINKMDKLAANF-ENAVDSIEEKLGAK 185 (753)
T ss_pred EH--HHHHHHhcCeEEEEeccCCcccceeeeehh----ccc---cCCchhhhhhhhhhhhhhh-hhHHHHHHHHhCCc
Confidence 54 566788899999999875333333444522 121 2799999999999876321 22334444555544
No 495
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.45 E-value=0.011 Score=54.36 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCHHHHHHHHhCCCC
Q 014101 287 QCFVFGPKKAGKSVLLNSFLGRPF 310 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~~~~~ 310 (430)
-|+|+|++|||||||+|-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 589999999999999998876544
No 496
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.43 E-value=0.084 Score=46.80 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred eEEEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccC
Q 014101 333 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM 412 (430)
Q Consensus 333 ~~~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v 412 (430)
...+.++|++|..... . ...+..+|.++++...+. .+...+..+++.+... +.|+.+|.||+|....
T Consensus 92 ~~d~viiDtpp~~~~~-~---~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~------~~~~~vV~N~~~~~~~-- 158 (179)
T cd03110 92 GAELIIIDGPPGIGCP-V---IASLTGADAALLVTEPTP-SGLHDLERAVELVRHF------GIPVGVVINKYDLNDE-- 158 (179)
T ss_pred CCCEEEEECcCCCcHH-H---HHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc------CCCEEEEEeCCCCCcc--
Confidence 4567889998653221 1 245678999999999873 5666777777666543 4678899999997542
Q ss_pred cHHHHHHHHHHhCCccc
Q 014101 413 AIQDSTRVFTFLVMVLY 429 (430)
Q Consensus 413 ~~~~~~~~~~~~g~~~f 429 (430)
...++.++++++|++++
T Consensus 159 ~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 159 IAEEIEDYCEEEGIPIL 175 (179)
T ss_pred hHHHHHHHHHHcCCCeE
Confidence 34678888999998764
No 497
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.37 E-value=0.1 Score=43.48 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCCHHHHHHHHhCCC
Q 014101 286 FQCFVFGPKKAGKSVLLNSFLGRP 309 (430)
Q Consensus 286 ~kI~vvG~~~vGKSSLi~~l~~~~ 309 (430)
--+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.36 E-value=0.016 Score=41.89 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=17.9
Q ss_pred EEEEeCCCCCCHHHHHHHHh
Q 014101 287 QCFVFGPKKAGKSVLLNSFL 306 (430)
Q Consensus 287 kI~vvG~~~vGKSSLi~~l~ 306 (430)
-.+|.|+.|+|||||+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999998875
No 499
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.35 E-value=0.66 Score=46.50 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=76.4
Q ss_pred ceeEEEEeCCCCCCHHHHHHHHhCCCC-----------------CCCc----CCCccceEEE---EEEEcC-CCeEEEEE
Q 014101 284 NVFQCFVFGPKKAGKSVLLNSFLGRPF-----------------SDNY----TPTTDERYAV---NVVDQP-GGTKKTVV 338 (430)
Q Consensus 284 ~~~kI~vvG~~~vGKSSLi~~l~~~~~-----------------~~~~----~~t~~~~~~~---~~v~~~-~~~~~~~i 338 (430)
.-+-|.|||+-.+||||||+||...-. ++.. ..|+.+.|.. ..+.+. +-..++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 447899999999999999999974321 1110 0111111111 123332 34556667
Q ss_pred EeCCCh--------h-----H-HHhhh-------------cccccccc--ccEEEEEEECC--C--hhhHHHH-HHHHHH
Q 014101 339 LREIPE--------E-----A-VAKLL-------------SNKDSLAA--CDIAVFVHDSS--D--ESSWKRA-TELLVE 384 (430)
Q Consensus 339 ~d~~G~--------e-----~-~~~~~-------------~~~~~~~~--ad~vilv~D~t--~--~~S~~~~-~~~l~~ 384 (430)
+|++|. . + ...-| -++..++. .-++++--|.+ + ++++..+ .+.+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 887661 0 0 00001 11222222 23566666644 2 3555444 346666
Q ss_pred HHhcCCCCCCCCcEEEEEeCCCCCCccCcHHHHHHHHHHhCCcc
Q 014101 385 VASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 428 (430)
Q Consensus 385 l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~~~~~~~~~~~g~~~ 428 (430)
+... +.|+|++.|-.+-.. ..+.+-+.++.++++++.
T Consensus 176 Lk~i------gKPFvillNs~~P~s-~et~~L~~eL~ekY~vpV 212 (492)
T PF09547_consen 176 LKEI------GKPFVILLNSTKPYS-EETQELAEELEEKYDVPV 212 (492)
T ss_pred HHHh------CCCEEEEEeCCCCCC-HHHHHHHHHHHHHhCCcE
Confidence 7665 689999999887443 444666777778887764
No 500
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.32 E-value=0.26 Score=43.24 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=51.3
Q ss_pred EEEEEeCCChhHHHhhhccccccccccEEEEEEECCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCCCccCcH
Q 014101 335 KTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAI 414 (430)
Q Consensus 335 ~~~i~d~~G~e~~~~~~~~~~~~~~ad~vilv~D~t~~~S~~~~~~~l~~l~~~~~~~~~~~PiilVgnK~Dl~~~~v~~ 414 (430)
.+.++|+++...... ...+..+|.++++.+.+. .++..+..+++.+.... .....+|.|+.+..... ..
T Consensus 64 d~viiD~p~~~~~~~----~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~-----~~~~~iv~N~~~~~~~~-~~ 132 (179)
T cd02036 64 DYILIDSPAGIERGF----ITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG-----IKVVGVIVNRVRPDMVE-GG 132 (179)
T ss_pred CEEEEECCCCCcHHH----HHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC-----CceEEEEEeCCcccccc-hh
Confidence 578899987533221 244678999999998754 56666666666665432 23467899999865422 22
Q ss_pred HHHHHHHHHhCCc
Q 014101 415 QDSTRVFTFLVMV 427 (430)
Q Consensus 415 ~~~~~~~~~~g~~ 427 (430)
+..+.+.+.++.+
T Consensus 133 ~~~~~~~~~~~~~ 145 (179)
T cd02036 133 DMVEDIEEILGVP 145 (179)
T ss_pred hHHHHHHHHhCCC
Confidence 2245555556654
Done!