BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014104
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 102/321 (31%), Gaps = 95/321 (29%)
Query: 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169
H+ GV +M+ +I++G D+ +++W+ E +C+ ++L S V
Sbjct: 157 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVR----------- 203
Query: 170 IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229
CM + V G D T RV+D+ + +C ++
Sbjct: 204 ----------------------------CMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 230 RMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQRVATLRSTDCTGIKTLCYNPCSRL 289
H A V C R
Sbjct: 236 MGHVAAVR--------------------------------------------CVQYDGRR 251
Query: 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349
V +G WD T L + N VYSLQ D +V G +D +RV D T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET 308
Query: 350 GEVLSRCVMDIGXXXXXXNKVSGVIERNEGRR-----LSAGCCIDRI--PKTIRPPITCL 402
G + K + ++ N + G C+ + P + +TCL
Sbjct: 309 GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368
Query: 403 AVGMKKVVTTHNSKYIRLWKF 423
V+T+ + ++LW
Sbjct: 369 QFNKNFVITSSDDGTVKLWDL 389
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 38/149 (25%)
Query: 204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXX 263
PE V G DGT +V+D R PV ++
Sbjct: 130 PEIVTGSRDGTVKVWDP---------RQKDDPVANM------------------------ 156
Query: 264 DQRVATLRSTDCTGIK-TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322
+ V DC + YN R+V AG G +DLR M WET I N V S
Sbjct: 157 -EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK-NGVCS 214
Query: 323 LQHLQNDTS--TLVVGGIDGVLRVLDQNT 349
L+ + D S LV ++G V D T
Sbjct: 215 LEFDRKDISMNKLVATSLEGKFHVFDMRT 243
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 159 FDFDESKIV-GLIGTRICIWRRNGL--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA 215
+D+ KIV GL I IW +N L + + G+ LC++Y + + G D T
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV---LCLQYDERVIITGSSDSTV 195
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLS 242
RV+D+ + + + HC V L +
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFN 222
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIVG 168
H V R G+++T D+ + +W + + + + A++ DFD+ IV
Sbjct: 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 169 LIGTR-ICIWRRNGLRSVFPSREGTFMKGL-CMRYFDPEAVVGCEDGTARVFDMYSRKCS 226
G R I +W N F +G+ C++Y D V G D T R++D+ C
Sbjct: 272 ASGDRTIKVW--NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329
Query: 227 QIIRMH 232
+++ H
Sbjct: 330 RVLEGH 335
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 165 KIVGLIGTRICIWR--RNGLRSVFPSREGTFMKGL-CMRYFDPEAVVGCEDGTARVFDMY 221
KI+ I T WR R+ L+ + E + KG+ C++Y D + V G D T +++D
Sbjct: 104 KIIQDIETIESNWRCGRHSLQRIHCRSETS--KGVYCLQYDDQKIVSGLRDNTIKIWDKN 161
Query: 222 SRKCSQIIRMHCAPVTSLSLSE 243
+ +C +I+ H V L E
Sbjct: 162 TLECKRILTGHTGSVLCLQYDE 183
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342
+NP S L+ +G+ WD++T L +T + + S H D S +V DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 343 RVLDQNTGEVLSRCVMD 359
R+ D +G+ L + D
Sbjct: 177 RIWDTASGQCLKTLIDD 193
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVE------EYSL-----PNAASL 156
H +G+ L+++ DK +++W + KC++ Y P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T +C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342
+NP S L+ +G+ WD++T L +T + + S H D S +V DG+
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 343 RVLDQNTGEVLSRCVMD 359
R+ D +G+ L + D
Sbjct: 177 RIWDTASGQCLKTLIDD 193
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVE------EYSL-----PNAASL 156
H +G+ L+++ DK +++W + KC++ Y P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T +C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 12/152 (7%)
Query: 102 RIDIDQW--KAHSVGVDQCRMKRGLILTGVG--DKVMRLWSLEGYKCVEEYSL-PNAASL 156
R+D+ QW + H +GV + L + D +RLW LE K ++ P A
Sbjct: 69 RLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 157 VDFDFDESKIVGLIGTRI----CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
+ F D + GT + +G + G F+ + G D
Sbjct: 128 LAFSPDSQYLA--TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
G +FD+ + K + H P+ SL+ S D
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339
TL ++P S+ + GT G + + + + K + + S+ + D L G ID
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY-SPDGKYLASGAID 185
Query: 340 GVLRVLDQNTGEVL 353
G++ + D TG++L
Sbjct: 186 GIINIFDIATGKLL 199
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 238 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 238 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 238 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 231 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 157
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 158 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 210 NTLKLWDYSKGKCLKTYTGH 229
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 241 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 252 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 178
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 179 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 231 NTLKLWDYSKGKCLKTYTGH 250
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 234 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 160
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 161 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 213 NTLKLWDYSKGKCLKTYTGH 232
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 235 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 161
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 162 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 236 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 162
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 163 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 215 NTLKLWDYSKGKCLKTYTGH 234
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 240 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 166
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 167 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 219 NTLKLWDYSKGKCLKTYTGH 238
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 235 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 161
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 162 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 241 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 29/125 (23%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASLVDFDFDESKIVGLIGT 172
L+ + D ++LW +G++C+ +PN +V D++ + + T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 173 RICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ 227
C+ R +R V P+++GT + C D T RV+ + +++C
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDGTL-------------IASCSNDQTVRVWVVATKECKA 270
Query: 228 IIRMH 232
+R H
Sbjct: 271 ELREH 275
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 241 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSG-SSM 82
I SL +I IF+ L F D++ V ++WN II + L F + G +S+
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74
Query: 83 RLHLEELAMK-----HHRFALEEGRIDIDQW------------KAHSVGVDQC-RMKRGL 124
L L + K R + E + W + H V C + +
Sbjct: 75 NLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNY 134
Query: 125 ILTGVGDKVMRLW 137
++TG DK +R++
Sbjct: 135 VITGADDKXIRVY 147
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSG-SSM 82
I SL +I IF+ L F D++ V ++WN II + L F + G +S+
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74
Query: 83 RLHLEELAMK-----HHRFALEEGRIDIDQW------------KAHSVGVDQC-RMKRGL 124
L L + K R + E + W + H V C + +
Sbjct: 75 NLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNY 134
Query: 125 ILTGVGDKVMRLW 137
++TG DK++R++
Sbjct: 135 VITGADDKMIRVY 147
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 20/185 (10%)
Query: 71 LHGFSNTSGSSMRLHLEELAMKHHRFAL-----EEGRIDIDQWKAHSVGVDQCRMKRGLI 125
LH + SS+ H EE H + L EE + + H V ++
Sbjct: 229 LHVWKLPKESSVPDHGEE-----HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283
Query: 126 LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVD---FDFDESK-IVGLIGTRICIWRRNG 181
++G D + +W + KC+ Y L + +D + + I + T I IW
Sbjct: 284 VSGSYDNTLIVWDVAQMKCL--YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQIIRMHCAPVTSL 239
++ + T + GL +R D V DG+ R +D YSRK S + + +T+
Sbjct: 342 GELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTF 399
Query: 240 SLSED 244
+S++
Sbjct: 400 YVSDN 404
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 259 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 185
Query: 164 SKIVGLIGTRIC-IW 177
S IV +C IW
Sbjct: 186 SLIVSSSYDGLCRIW 200
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXX-X 257
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 258 XXXXXXDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
Q + TL D + + ++P + + A T WD K L
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 318 NVVYSLQHLQNDTST----LVVGGIDGVLRVLDQNTGEVLSR 355
N Y + N + T +V G D ++ + + T E++ +
Sbjct: 257 NEKYCI--FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 183
Query: 164 SKIVGLIGTRIC-IW 177
S IV +C IW
Sbjct: 184 SLIVSSSYDGLCRIW 198
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337
I+++C++P + + G WD+ K + + +YSL + + LV G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGS 184
Query: 338 IDGVLRVLDQNTGE 351
D +R+ D TG+
Sbjct: 185 GDRTVRIWDLRTGQ 198
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 264 DQRVATLRSTDCTGIKTLCYNP------------CSRLVFAGTTAGYASCWDLRTMKSLW 311
D V +LR+ D K + + LVF GT GY +D ++ K LW
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521
Query: 312 ETR-----ISPNVVYSLQHLQNDTSTLVVGG 337
+ + +SP + + Q T+ GG
Sbjct: 522 KFQTGSGIVSPPITWEQDGEQYLGVTVGYGG 552
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 4/153 (2%)
Query: 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQ 265
AV D + R++++ + +C H V S++ S D +
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 266 RVATL-RSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322
+ TL R + + ++P + ++ +G WDL T + + + + N V S
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 323 LQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355
+ + D S DGV R+ D GE LS
Sbjct: 202 VT-VSPDGSLCASSDKDGVARLWDLTKGEALSE 233
>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 278
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 337 GIDGVLRV-LD----QNTGEVLSRCVMDIGXXXXXXNKVSGVIERNEGRRLSAGCCIDRI 391
G DGVL V LD + G + R + DI V V+ R EG+ S+G D I
Sbjct: 26 GDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSSGGSFDLI 85
Query: 392 PKTI 395
+TI
Sbjct: 86 DETI 89
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 286 CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV-YSLQHLQNDTSTLV----VGGIDG 340
LVF GT GY D T LW+ +I + Y + + T + VGG G
Sbjct: 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPG 542
Query: 341 VLRVLD 346
V V D
Sbjct: 543 VGLVFD 548
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 286 CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV-YSLQHLQNDTSTLV----VGGIDG 340
LVF GT GY D T LW+ +I + Y + + T + VGG G
Sbjct: 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPG 542
Query: 341 VLRVLD 346
V V D
Sbjct: 543 VGLVFD 548
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 286 CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV-YSLQHLQNDTSTLV----VGGIDG 340
LVF GT GY D T LW+ +I + Y + + T + VGG G
Sbjct: 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPG 542
Query: 341 VLRVLD 346
V V D
Sbjct: 543 VGLVFD 548
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 30/248 (12%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTR-ICIWRRNG 181
L+G D +RLW L + L V F D +IV R I +W G
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503
Query: 182 --LRSVFPSREGTFMKGLCMRY----FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235
++ EG C+R+ P V D T +V+++ + K + H
Sbjct: 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 236 VTSLSLSEDQXXXXXXXXXXXXXXXXXXD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294
V+++++S D + +++ +L + I LC++P + A T
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV--IHALCFSPNRYWLCAAT 621
Query: 295 TAGYASCWDLRTMKSLWETRIS------------P-----NVVY-SLQHLQNDTSTLVVG 336
G WDL + + + ++ P V+Y + + D STL G
Sbjct: 622 EHGI-KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680
Query: 337 GIDGVLRV 344
DGV+RV
Sbjct: 681 YTDGVIRV 688
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,560,667
Number of Sequences: 62578
Number of extensions: 438896
Number of successful extensions: 1355
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 120
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)