Query 014104
Match_columns 430
No_of_seqs 625 out of 4135
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 01:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0281 Beta-TrCP (transducin 100.0 1E-52 2.2E-57 347.5 21.5 371 20-426 71-479 (499)
2 KOG0271 Notchless-like WD40 re 100.0 4.5E-50 9.8E-55 335.6 26.7 314 103-422 106-479 (480)
3 KOG0286 G-protein beta subunit 100.0 1.3E-42 2.9E-47 281.2 32.3 281 104-422 47-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.2E-44 7E-49 304.2 22.7 275 109-422 172-458 (459)
5 KOG0274 Cdc4 and related F-box 100.0 1.8E-42 3.9E-47 322.2 33.4 367 18-428 102-486 (537)
6 KOG0315 G-protein beta subunit 100.0 1E-40 2.2E-45 264.4 28.5 266 124-428 12-292 (311)
7 KOG0271 Notchless-like WD40 re 100.0 2.4E-41 5.1E-46 283.4 20.7 284 89-375 121-466 (480)
8 KOG0295 WD40 repeat-containing 100.0 1.3E-40 2.8E-45 277.3 24.4 290 96-423 92-405 (406)
9 KOG0279 G protein beta subunit 100.0 4.2E-39 9E-44 259.4 30.5 290 103-425 6-314 (315)
10 KOG0285 Pleiotropic regulator 100.0 4.7E-39 1E-43 267.5 27.1 297 95-424 134-439 (460)
11 KOG0272 U4/U6 small nuclear ri 100.0 2E-40 4.4E-45 281.2 18.6 240 104-346 209-458 (459)
12 KOG0282 mRNA splicing factor [ 100.0 4.4E-38 9.6E-43 271.4 16.3 283 103-422 205-503 (503)
13 KOG0318 WD40 repeat stress pro 100.0 5.5E-35 1.2E-39 254.7 35.2 315 106-424 184-602 (603)
14 KOG0284 Polyadenylation factor 100.0 1.8E-37 4E-42 262.2 17.3 279 109-424 93-380 (464)
15 KOG0279 G protein beta subunit 100.0 9.8E-36 2.1E-40 240.0 25.7 243 102-348 53-313 (315)
16 KOG0263 Transcription initiati 100.0 7.4E-37 1.6E-41 279.0 21.5 276 102-425 368-650 (707)
17 KOG0273 Beta-transducin family 100.0 1.6E-35 3.4E-40 254.8 28.0 283 106-428 173-486 (524)
18 KOG0273 Beta-transducin family 100.0 4E-35 8.7E-40 252.3 28.9 270 112-424 235-523 (524)
19 cd00200 WD40 WD40 domain, foun 100.0 3.6E-34 7.7E-39 254.7 34.4 279 105-422 2-289 (289)
20 KOG0265 U5 snRNP-specific prot 100.0 8.8E-35 1.9E-39 236.8 26.1 281 103-422 38-336 (338)
21 KOG0293 WD40 repeat-containing 100.0 4.4E-35 9.6E-40 248.1 25.0 286 102-426 214-515 (519)
22 KOG0645 WD40 repeat protein [G 100.0 2.3E-33 5.1E-38 225.4 32.5 278 103-424 5-311 (312)
23 KOG0286 G-protein beta subunit 100.0 4.6E-34 9.9E-39 231.8 28.4 246 146-427 49-306 (343)
24 KOG0291 WD40-repeat-containing 100.0 2.9E-33 6.2E-38 253.8 35.7 318 108-427 261-615 (893)
25 KOG0296 Angio-associated migra 100.0 1.2E-33 2.5E-38 236.1 30.4 318 102-424 54-398 (399)
26 KOG0319 WD40-repeat-containing 100.0 9.3E-35 2E-39 262.9 25.5 320 101-427 136-580 (775)
27 KOG0316 Conserved WD40 repeat- 100.0 8.4E-34 1.8E-38 223.4 25.8 255 102-361 7-270 (307)
28 KOG0263 Transcription initiati 100.0 4.6E-35 9.9E-40 267.4 21.5 208 101-350 440-651 (707)
29 KOG0278 Serine/threonine kinas 100.0 4.2E-35 9.1E-40 232.7 18.5 282 107-428 9-301 (334)
30 KOG0319 WD40-repeat-containing 100.0 3.6E-34 7.9E-39 259.1 26.7 283 103-424 314-619 (775)
31 KOG0291 WD40-repeat-containing 100.0 1.2E-32 2.6E-37 249.8 35.8 320 104-426 137-510 (893)
32 KOG0281 Beta-TrCP (transducin 100.0 7.1E-36 1.5E-40 247.8 13.7 242 104-353 229-482 (499)
33 KOG0318 WD40 repeat stress pro 100.0 1.2E-32 2.6E-37 240.2 34.3 246 104-351 51-353 (603)
34 KOG0313 Microtubule binding pr 100.0 1.9E-33 4.1E-38 235.9 27.0 275 110-424 103-418 (423)
35 KOG0315 G-protein beta subunit 100.0 1E-32 2.3E-37 219.0 28.2 259 100-361 28-301 (311)
36 KOG0266 WD40 repeat-containing 100.0 4.3E-33 9.3E-38 260.7 30.8 283 105-424 151-454 (456)
37 KOG0285 Pleiotropic regulator 100.0 6.4E-34 1.4E-38 237.0 20.5 245 145-428 144-393 (460)
38 KOG0276 Vesicle coat complex C 100.0 3.3E-33 7.1E-38 248.4 24.8 267 107-376 8-295 (794)
39 KOG0268 Sof1-like rRNA process 100.0 2.5E-34 5.3E-39 239.8 16.3 301 84-428 40-349 (433)
40 PLN00181 protein SPA1-RELATED; 100.0 2.1E-31 4.6E-36 267.5 39.2 288 108-423 479-792 (793)
41 KOG0306 WD40-repeat-containing 100.0 6.6E-31 1.4E-35 238.5 28.8 279 106-425 367-665 (888)
42 KOG0278 Serine/threonine kinas 100.0 1.2E-32 2.6E-37 218.8 15.1 244 104-352 51-301 (334)
43 KOG0295 WD40 repeat-containing 100.0 4.4E-32 9.6E-37 226.5 19.2 241 104-347 142-405 (406)
44 KOG0284 Polyadenylation factor 100.0 9.1E-33 2E-37 233.8 14.9 237 152-428 97-341 (464)
45 KOG0643 Translation initiation 100.0 4.6E-31 1E-35 211.8 22.4 293 107-425 5-318 (327)
46 KOG0265 U5 snRNP-specific prot 100.0 8.6E-31 1.9E-35 213.6 23.8 258 88-346 52-336 (338)
47 KOG0266 WD40 repeat-containing 100.0 2.2E-30 4.7E-35 242.4 29.9 242 152-428 160-413 (456)
48 KOG0306 WD40-repeat-containing 100.0 1.2E-29 2.5E-34 230.4 31.0 320 103-427 98-583 (888)
49 KOG0274 Cdc4 and related F-box 100.0 1.5E-30 3.2E-35 242.7 25.9 247 104-358 240-492 (537)
50 KOG0316 Conserved WD40 repeat- 100.0 1.7E-30 3.7E-35 204.9 21.0 243 146-428 11-261 (307)
51 KOG0292 Vesicle coat complex C 100.0 8.1E-30 1.8E-34 235.2 28.4 300 107-426 4-350 (1202)
52 KOG0296 Angio-associated migra 100.0 6.4E-30 1.4E-34 213.8 24.5 240 104-348 98-398 (399)
53 KOG1407 WD40 repeat protein [F 100.0 1.2E-29 2.5E-34 203.1 24.1 249 106-357 14-270 (313)
54 KOG0301 Phospholipase A2-activ 100.0 1.6E-29 3.5E-34 227.6 27.8 274 103-425 5-289 (745)
55 KOG0643 Translation initiation 100.0 9.4E-30 2E-34 204.3 23.3 256 90-349 29-318 (327)
56 KOG0275 Conserved WD40 repeat- 100.0 7.8E-31 1.7E-35 216.1 17.4 275 110-422 211-507 (508)
57 KOG0288 WD40 repeat protein Ti 100.0 5.8E-31 1.3E-35 223.3 17.1 276 105-422 168-459 (459)
58 KOG0276 Vesicle coat complex C 100.0 1.6E-29 3.4E-34 225.1 26.8 251 104-357 47-307 (794)
59 PLN00181 protein SPA1-RELATED; 100.0 9.8E-29 2.1E-33 248.3 34.1 256 131-426 457-740 (793)
60 KOG1446 Histone H3 (Lys4) meth 100.0 6.7E-28 1.4E-32 198.6 32.3 284 105-426 7-305 (311)
61 KOG0283 WD40 repeat-containing 100.0 8.4E-30 1.8E-34 235.0 23.6 286 104-425 258-577 (712)
62 KOG0277 Peroxisomal targeting 100.0 1.7E-29 3.6E-34 201.4 21.0 252 131-423 37-308 (311)
63 KOG0294 WD40 repeat-containing 100.0 2E-28 4.4E-33 201.1 24.7 244 103-426 34-283 (362)
64 KOG0300 WD40 repeat-containing 100.0 3.7E-29 8E-34 205.7 20.1 288 104-427 140-479 (481)
65 KOG0640 mRNA cleavage stimulat 100.0 1.3E-28 2.8E-33 201.8 22.5 287 102-424 102-426 (430)
66 KOG0772 Uncharacterized conser 100.0 1.7E-28 3.6E-33 214.0 23.7 278 107-421 162-484 (641)
67 PTZ00420 coronin; Provisional 100.0 3.8E-27 8.2E-32 220.7 34.4 224 128-427 50-296 (568)
68 PTZ00421 coronin; Provisional 100.0 3.4E-27 7.4E-32 220.1 33.4 212 107-358 70-300 (493)
69 KOG0305 Anaphase promoting com 100.0 6.8E-28 1.5E-32 216.8 27.6 262 124-425 190-462 (484)
70 KOG0293 WD40 repeat-containing 100.0 3.5E-29 7.5E-34 212.5 17.9 258 89-348 230-513 (519)
71 cd00200 WD40 WD40 domain, foun 100.0 2.2E-27 4.7E-32 211.0 30.5 241 104-346 43-289 (289)
72 PTZ00421 coronin; Provisional 100.0 4E-27 8.7E-32 219.6 32.9 254 112-428 20-294 (493)
73 KOG0310 Conserved WD40 repeat- 100.0 1.3E-27 2.7E-32 207.4 26.2 272 109-424 23-309 (487)
74 KOG0282 mRNA splicing factor [ 100.0 8.6E-29 1.9E-33 214.2 16.6 241 104-346 250-503 (503)
75 KOG0313 Microtubule binding pr 100.0 3.2E-27 6.9E-32 198.7 23.5 249 96-348 128-418 (423)
76 KOG1539 WD repeat protein [Gen 100.0 4.7E-26 1E-30 209.4 32.7 323 100-427 190-609 (910)
77 KOG0292 Vesicle coat complex C 100.0 5.7E-28 1.2E-32 223.1 19.9 229 194-427 12-283 (1202)
78 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-26 8.3E-31 188.3 28.5 243 151-429 14-267 (311)
79 KOG1407 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 186.2 22.7 237 152-429 21-266 (313)
80 KOG1408 WD40 repeat protein [F 100.0 8E-27 1.7E-31 211.0 24.0 283 105-425 362-714 (1080)
81 KOG0645 WD40 repeat protein [G 100.0 2.2E-26 4.7E-31 185.4 23.3 198 225-424 6-225 (312)
82 KOG0308 Conserved WD40 repeat- 100.0 7.3E-27 1.6E-31 209.2 22.7 316 110-427 19-396 (735)
83 KOG0264 Nucleosome remodeling 100.0 8.4E-27 1.8E-31 200.7 22.0 270 102-424 114-404 (422)
84 KOG1036 Mitotic spindle checkp 100.0 5E-26 1.1E-30 186.7 25.5 260 111-373 12-287 (323)
85 KOG0289 mRNA splicing factor [ 100.0 3.7E-26 8E-31 195.4 25.7 272 113-423 220-505 (506)
86 KOG0641 WD40 repeat protein [G 100.0 5E-25 1.1E-29 173.2 29.9 283 108-424 28-349 (350)
87 KOG2096 WD40 repeat protein [G 100.0 2.7E-26 5.8E-31 189.0 23.2 287 103-423 77-401 (420)
88 KOG0305 Anaphase promoting com 100.0 1.4E-26 3.1E-31 208.3 22.8 237 111-350 216-463 (484)
89 KOG0639 Transducin-like enhanc 100.0 7E-27 1.5E-31 203.3 19.9 273 110-424 417-704 (705)
90 KOG0277 Peroxisomal targeting 100.0 9.7E-27 2.1E-31 185.7 19.1 238 154-428 11-269 (311)
91 KOG0647 mRNA export protein (c 100.0 6.9E-26 1.5E-30 185.3 23.3 263 110-376 25-309 (347)
92 KOG0310 Conserved WD40 repeat- 99.9 3E-26 6.5E-31 198.9 21.2 237 149-425 24-269 (487)
93 KOG0288 WD40 repeat protein Ti 99.9 7.9E-27 1.7E-31 198.3 16.9 238 104-345 211-458 (459)
94 KOG0299 U3 snoRNP-associated p 99.9 6.7E-26 1.5E-30 195.3 22.8 274 104-426 134-412 (479)
95 KOG0275 Conserved WD40 repeat- 99.9 1E-26 2.2E-31 192.0 16.9 242 152-427 214-470 (508)
96 KOG0973 Histone transcription 99.9 9.7E-26 2.1E-30 213.6 25.3 281 109-426 9-357 (942)
97 KOG2106 Uncharacterized conser 99.9 3.8E-24 8.3E-29 186.5 32.5 311 104-423 279-625 (626)
98 KOG2055 WD40 repeat protein [G 99.9 2.5E-25 5.5E-30 191.8 24.5 296 94-424 189-512 (514)
99 PTZ00420 coronin; Provisional 99.9 2.1E-24 4.6E-29 202.3 32.8 206 104-351 66-296 (568)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.5E-24 1.6E-28 190.2 34.8 264 124-428 3-283 (300)
101 KOG1539 WD repeat protein [Gen 99.9 2.4E-24 5.2E-29 198.3 29.5 189 194-422 451-646 (910)
102 KOG0646 WD40 repeat protein [G 99.9 6.7E-25 1.5E-29 189.5 23.0 276 128-426 13-309 (476)
103 KOG0289 mRNA splicing factor [ 99.9 3.6E-25 7.8E-30 189.4 21.0 243 104-347 253-505 (506)
104 KOG1408 WD40 repeat protein [F 99.9 4.6E-25 1E-29 199.7 22.5 340 85-428 80-630 (1080)
105 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.2E-30 200.8 17.7 227 161-425 35-286 (735)
106 KOG0650 WD40 repeat nucleolar 99.9 2.5E-24 5.5E-29 191.3 24.3 303 104-421 392-732 (733)
107 KOG0640 mRNA cleavage stimulat 99.9 1.2E-25 2.7E-30 184.4 14.4 220 150-429 111-340 (430)
108 KOG0301 Phospholipase A2-activ 99.9 2.1E-24 4.6E-29 194.9 22.0 233 105-348 50-288 (745)
109 KOG1036 Mitotic spindle checkp 99.9 2.1E-23 4.6E-28 171.4 25.5 243 152-429 14-267 (323)
110 KOG0646 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 186.5 19.2 215 112-361 81-320 (476)
111 KOG2106 Uncharacterized conser 99.9 7.1E-22 1.5E-26 172.5 33.3 275 105-422 238-519 (626)
112 KOG0647 mRNA export protein (c 99.9 4.4E-23 9.5E-28 169.0 23.8 244 152-429 28-286 (347)
113 KOG1274 WD40 repeat protein [G 99.9 6.3E-23 1.4E-27 191.1 27.4 239 109-349 10-263 (933)
114 KOG0283 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 198.3 18.9 204 103-306 360-577 (712)
115 KOG0299 U3 snoRNP-associated p 99.9 2.3E-23 5E-28 179.7 22.4 223 109-337 199-444 (479)
116 KOG1332 Vesicle coat complex C 99.9 1.4E-23 3E-28 166.9 18.9 226 197-425 17-287 (299)
117 KOG2048 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 178.7 31.6 244 107-352 20-279 (691)
118 KOG4283 Transcription-coupled 99.9 1.1E-22 2.3E-27 166.2 23.7 282 107-424 38-365 (397)
119 KOG0269 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 191.7 19.4 269 152-425 40-341 (839)
120 KOG0267 Microtubule severing p 99.9 6.5E-25 1.4E-29 199.0 8.9 228 106-375 22-253 (825)
121 KOG1274 WD40 repeat protein [G 99.9 3.3E-22 7.2E-27 186.3 26.9 240 150-425 12-263 (933)
122 KOG0268 Sof1-like rRNA process 99.9 1.2E-23 2.6E-28 176.2 15.2 247 104-355 101-352 (433)
123 KOG0772 Uncharacterized conser 99.9 6.7E-23 1.4E-27 179.3 20.3 223 152-375 168-424 (641)
124 KOG0641 WD40 repeat protein [G 99.9 4E-21 8.6E-26 151.3 27.8 243 102-348 79-349 (350)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-21 1E-25 172.0 32.6 254 102-359 21-290 (300)
126 KOG4378 Nuclear protein COP1 [ 99.9 8.9E-23 1.9E-27 177.7 20.2 262 128-427 8-283 (673)
127 KOG0973 Histone transcription 99.9 2E-22 4.4E-27 191.3 23.5 241 188-430 10-318 (942)
128 KOG0321 WD40 repeat-containing 99.9 4.1E-23 8.8E-28 185.0 17.7 270 105-426 93-393 (720)
129 KOG0639 Transducin-like enhanc 99.9 2.2E-23 4.7E-28 181.8 15.5 243 148-430 416-669 (705)
130 KOG2445 Nuclear pore complex c 99.9 1.2E-21 2.7E-26 160.9 24.7 262 109-426 10-320 (361)
131 KOG4283 Transcription-coupled 99.9 1.7E-22 3.6E-27 165.0 19.3 201 203-428 56-280 (397)
132 KOG2048 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 176.3 26.8 238 151-427 25-278 (691)
133 KOG0270 WD40 repeat-containing 99.9 2.6E-22 5.7E-27 172.6 20.1 227 162-427 191-452 (463)
134 KOG0300 WD40 repeat-containing 99.9 6.5E-23 1.4E-27 169.1 15.5 189 202-427 159-389 (481)
135 KOG1332 Vesicle coat complex C 99.9 3.6E-22 7.8E-27 158.9 18.5 239 108-348 7-286 (299)
136 KOG0264 Nucleosome remodeling 99.9 4.8E-22 1.1E-26 171.6 19.6 203 105-348 170-404 (422)
137 KOG1063 RNA polymerase II elon 99.9 6E-21 1.3E-25 172.8 25.8 323 103-426 182-650 (764)
138 KOG0267 Microtubule severing p 99.9 1.3E-23 2.7E-28 190.8 7.4 184 204-425 41-227 (825)
139 KOG0294 WD40 repeat-containing 99.9 3.7E-21 7.9E-26 158.7 21.2 201 187-428 37-241 (362)
140 KOG1188 WD40 repeat protein [G 99.9 2.5E-21 5.5E-26 161.3 19.4 256 168-424 46-346 (376)
141 KOG0302 Ribosome Assembly prot 99.9 4.4E-21 9.5E-26 161.8 20.0 215 109-349 148-379 (440)
142 KOG0269 WD40 repeat-containing 99.9 4.8E-22 1E-26 181.9 14.4 226 122-350 100-342 (839)
143 KOG0322 G-protein beta subunit 99.9 1.8E-21 3.8E-26 156.7 15.5 242 104-347 6-322 (323)
144 KOG1034 Transcriptional repres 99.9 1.9E-20 4.2E-25 155.3 21.5 219 203-424 105-383 (385)
145 KOG4328 WD40 protein [Function 99.9 3.5E-20 7.6E-25 160.2 23.7 250 105-358 179-460 (498)
146 KOG1063 RNA polymerase II elon 99.9 8.7E-20 1.9E-24 165.3 26.7 317 104-424 46-437 (764)
147 KOG1273 WD40 repeat protein [G 99.9 1.4E-19 3.1E-24 149.4 23.3 245 115-361 26-293 (405)
148 KOG4378 Nuclear protein COP1 [ 99.9 4.1E-20 8.9E-25 161.3 20.6 255 114-372 36-305 (673)
149 KOG0302 Ribosome Assembly prot 99.9 3E-20 6.6E-25 156.8 17.8 182 206-426 168-380 (440)
150 KOG1240 Protein kinase contain 99.9 3.5E-19 7.5E-24 171.0 26.4 326 95-422 1031-1431(1431)
151 KOG0270 WD40 repeat-containing 99.9 3.3E-20 7.2E-25 159.7 17.0 185 203-426 192-406 (463)
152 KOG2055 WD40 repeat protein [G 99.8 2.2E-19 4.7E-24 155.5 19.9 235 111-348 256-512 (514)
153 KOG0303 Actin-binding protein 99.8 3.8E-19 8.2E-24 151.1 20.8 163 185-350 76-251 (472)
154 KOG1538 Uncharacterized conser 99.8 3.3E-18 7.1E-23 154.7 25.9 238 104-348 45-293 (1081)
155 KOG0307 Vesicle coat complex C 99.8 6.6E-20 1.4E-24 175.3 15.2 262 129-427 36-330 (1049)
156 KOG0303 Actin-binding protein 99.8 1.8E-18 3.8E-23 147.1 19.2 203 107-352 76-298 (472)
157 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.4E-21 135.3 29.7 232 112-350 5-250 (391)
158 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.2E-21 149.0 35.5 247 107-357 60-323 (466)
159 KOG1445 Tumor-specific antigen 99.8 6E-19 1.3E-23 158.5 16.8 114 278-428 630-754 (1012)
160 KOG2919 Guanine nucleotide-bin 99.8 2.3E-18 4.9E-23 142.9 18.6 237 156-425 54-328 (406)
161 KOG0307 Vesicle coat complex C 99.8 2.1E-19 4.6E-24 171.9 14.0 236 114-351 66-330 (1049)
162 KOG1517 Guanine nucleotide bin 99.8 8.2E-18 1.8E-22 159.5 23.9 281 114-427 1066-1384(1387)
163 KOG1334 WD40 repeat protein [G 99.8 4E-19 8.7E-24 154.9 12.5 291 100-427 130-469 (559)
164 KOG2919 Guanine nucleotide-bin 99.8 8.6E-18 1.9E-22 139.4 19.4 215 124-339 125-361 (406)
165 KOG1963 WD40 repeat protein [G 99.8 1.8E-16 3.8E-21 148.2 30.4 320 104-426 49-540 (792)
166 KOG2110 Uncharacterized conser 99.8 1.3E-16 2.7E-21 135.0 26.5 231 156-425 10-249 (391)
167 KOG0649 WD40 repeat protein [G 99.8 6.7E-17 1.5E-21 129.0 23.5 225 98-357 48-282 (325)
168 KOG1445 Tumor-specific antigen 99.8 3.6E-18 7.9E-23 153.5 17.5 239 157-430 585-850 (1012)
169 KOG1273 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 137.3 20.0 194 194-424 26-226 (405)
170 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.8E-22 135.6 19.8 242 106-348 57-361 (370)
171 KOG0321 WD40 repeat-containing 99.8 8.6E-18 1.9E-22 151.2 19.5 229 165-427 66-350 (720)
172 KOG1007 WD repeat protein TSSC 99.8 3.4E-17 7.4E-22 133.9 20.7 292 124-425 28-362 (370)
173 KOG2096 WD40 repeat protein [G 99.8 9.3E-18 2E-22 139.0 17.6 199 195-424 90-308 (420)
174 KOG0642 Cell-cycle nuclear pro 99.8 3.5E-18 7.6E-23 151.7 15.6 251 107-360 289-573 (577)
175 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.3E-20 138.9 31.7 265 126-425 6-305 (330)
176 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 139.5 16.8 181 124-308 42-245 (376)
177 KOG4227 WD40 repeat protein [G 99.8 2E-17 4.2E-22 140.7 18.2 297 107-423 51-386 (609)
178 KOG4328 WD40 protein [Function 99.8 2.6E-17 5.6E-22 142.6 18.4 242 104-348 226-495 (498)
179 KOG0322 G-protein beta subunit 99.8 1.5E-17 3.2E-22 134.3 15.2 233 152-423 15-322 (323)
180 KOG0649 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 125.0 22.5 200 153-358 12-245 (325)
181 KOG1272 WD40-repeat-containing 99.8 3.1E-18 6.7E-23 148.6 9.8 201 153-358 131-333 (545)
182 KOG1587 Cytoplasmic dynein int 99.8 5.1E-16 1.1E-20 144.6 24.9 256 131-424 221-516 (555)
183 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-14 4.9E-19 134.9 36.6 285 102-425 145-443 (466)
184 KOG2445 Nuclear pore complex c 99.7 9.3E-16 2E-20 126.7 22.6 196 194-425 16-257 (361)
185 KOG1034 Transcriptional repres 99.7 5.5E-17 1.2E-21 135.0 15.1 224 111-375 88-368 (385)
186 KOG1517 Guanine nucleotide bin 99.7 1.8E-16 3.9E-21 150.5 20.4 235 113-350 1110-1383(1387)
187 KOG2394 WD40 protein DMR-N9 [G 99.7 1.8E-16 3.8E-21 140.2 18.9 211 158-370 130-384 (636)
188 KOG1524 WD40 repeat-containing 99.7 2.1E-16 4.5E-21 139.7 18.9 202 206-420 78-282 (737)
189 KOG1538 Uncharacterized conser 99.7 7.6E-16 1.6E-20 139.6 21.3 266 114-424 14-293 (1081)
190 KOG0642 Cell-cycle nuclear pro 99.7 9.2E-17 2E-21 142.8 15.0 192 197-426 300-563 (577)
191 KOG0644 Uncharacterized conser 99.7 1.9E-17 4.1E-22 153.3 11.1 226 105-374 183-452 (1113)
192 KOG1009 Chromatin assembly com 99.7 1.2E-15 2.6E-20 130.6 20.9 278 112-427 13-375 (434)
193 KOG0290 Conserved WD40 repeat- 99.7 2.6E-15 5.6E-20 123.1 20.4 244 104-349 37-319 (364)
194 KOG1587 Cytoplasmic dynein int 99.7 2.7E-15 5.9E-20 139.8 22.4 235 112-349 242-517 (555)
195 KOG0771 Prolactin regulatory e 99.7 4.7E-15 1E-19 127.8 22.0 194 195-425 148-355 (398)
196 KOG0650 WD40 repeat nucleolar 99.7 2.3E-15 5E-20 134.8 20.1 258 146-422 394-678 (733)
197 KOG1272 WD40-repeat-containing 99.7 5.4E-17 1.2E-21 140.9 9.5 225 116-346 133-360 (545)
198 KOG2111 Uncharacterized conser 99.7 3.1E-14 6.7E-19 118.4 25.0 232 156-425 10-257 (346)
199 KOG3881 Uncharacterized conser 99.7 4.7E-15 1E-19 126.5 19.0 210 105-356 98-328 (412)
200 PRK01742 tolB translocation pr 99.7 1.1E-14 2.5E-19 136.3 20.8 221 131-362 183-417 (429)
201 KOG2321 WD40 repeat protein [G 99.7 4E-14 8.6E-19 126.5 22.7 243 110-358 49-312 (703)
202 KOG1523 Actin-related protein 99.7 2.5E-14 5.5E-19 118.9 19.4 199 151-351 10-239 (361)
203 KOG0290 Conserved WD40 repeat- 99.7 4.3E-14 9.3E-19 116.1 20.2 245 142-425 35-319 (364)
204 KOG2111 Uncharacterized conser 99.6 3.4E-13 7.4E-18 112.3 25.3 173 132-306 75-257 (346)
205 PF02239 Cytochrom_D1: Cytochr 99.6 6.9E-13 1.5E-17 120.3 29.8 188 124-313 8-210 (369)
206 PRK11028 6-phosphogluconolacto 99.6 3.8E-13 8.2E-18 122.2 28.0 243 104-348 27-304 (330)
207 KOG1310 WD40 repeat protein [G 99.6 5.2E-15 1.1E-19 131.4 14.1 221 97-356 35-311 (758)
208 KOG1963 WD40 repeat protein [G 99.6 4.6E-13 9.9E-18 125.7 27.4 266 110-375 203-524 (792)
209 KOG1240 Protein kinase contain 99.6 9.5E-14 2.1E-18 134.4 23.2 272 137-427 1034-1337(1431)
210 KOG1524 WD40 repeat-containing 99.6 2.4E-14 5.1E-19 126.9 16.9 203 124-344 77-282 (737)
211 TIGR03300 assembly_YfgL outer 99.6 2.3E-12 4.9E-17 119.3 31.0 265 119-428 62-342 (377)
212 KOG1523 Actin-related protein 99.6 7.5E-14 1.6E-18 116.2 18.3 237 106-345 4-275 (361)
213 KOG1409 Uncharacterized conser 99.6 2.5E-13 5.4E-18 114.2 19.8 244 102-349 14-271 (404)
214 TIGR03300 assembly_YfgL outer 99.6 4.3E-12 9.4E-17 117.5 30.5 231 121-360 104-350 (377)
215 KOG2321 WD40 repeat protein [G 99.6 9E-14 2E-18 124.3 18.0 241 146-429 46-307 (703)
216 KOG4227 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 118.2 17.6 301 33-348 17-387 (609)
217 PF02239 Cytochrom_D1: Cytochr 99.6 6.7E-12 1.4E-16 114.0 30.1 253 104-357 28-356 (369)
218 PRK01742 tolB translocation pr 99.6 2E-13 4.3E-18 127.9 21.0 217 105-329 196-426 (429)
219 KOG3881 Uncharacterized conser 99.6 3.6E-13 7.7E-18 115.1 20.1 193 197-427 109-323 (412)
220 KOG0771 Prolactin regulatory e 99.6 3.5E-14 7.6E-19 122.4 14.2 190 116-306 148-355 (398)
221 KOG1009 Chromatin assembly com 99.6 4.7E-14 1E-18 120.9 14.7 150 205-356 28-203 (434)
222 PRK03629 tolB translocation pr 99.6 3.7E-12 8.1E-17 119.1 28.1 221 133-361 180-418 (429)
223 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-13 4.6E-18 121.0 15.8 161 165-327 188-383 (636)
224 KOG0644 Uncharacterized conser 99.5 1.5E-14 3.3E-19 134.4 8.8 252 91-353 198-473 (1113)
225 PRK04922 tolB translocation pr 99.5 5.5E-12 1.2E-16 118.5 25.2 219 132-358 184-420 (433)
226 KOG4497 Uncharacterized conser 99.5 3.7E-12 8E-17 106.7 20.7 288 114-417 50-425 (447)
227 KOG0974 WD-repeat protein WDR6 99.5 1.1E-12 2.3E-17 125.4 18.7 271 111-425 6-289 (967)
228 PF08662 eIF2A: Eukaryotic tra 99.5 4.5E-12 9.8E-17 104.5 19.9 134 215-357 41-187 (194)
229 KOG1334 WD40 repeat protein [G 99.5 5.6E-13 1.2E-17 117.0 14.3 258 146-427 136-427 (559)
230 PRK02889 tolB translocation pr 99.5 2.6E-11 5.7E-16 113.6 25.6 220 132-359 176-413 (427)
231 PRK03629 tolB translocation pr 99.5 2.8E-11 6.1E-16 113.2 24.9 216 107-328 193-427 (429)
232 KOG2139 WD40 repeat protein [G 99.5 1.2E-10 2.7E-15 98.9 25.9 232 114-349 100-384 (445)
233 KOG0974 WD-repeat protein WDR6 99.5 2.3E-12 5E-17 123.1 17.6 187 157-348 93-288 (967)
234 PRK05137 tolB translocation pr 99.5 8.2E-11 1.8E-15 110.8 27.4 215 132-352 182-416 (435)
235 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3E-16 111.1 20.5 206 124-349 7-221 (541)
236 KOG1310 WD40 repeat protein [G 99.5 3.4E-13 7.4E-18 120.0 9.7 169 226-423 43-230 (758)
237 PF08662 eIF2A: Eukaryotic tra 99.4 1.4E-11 3.1E-16 101.6 18.5 128 255-424 38-179 (194)
238 PRK04922 tolB translocation pr 99.4 5.1E-11 1.1E-15 112.0 23.6 218 105-328 196-432 (433)
239 TIGR02658 TTQ_MADH_Hv methylam 99.4 4E-09 8.6E-14 93.8 33.6 251 132-428 27-334 (352)
240 KOG2139 WD40 repeat protein [G 99.4 4.1E-11 8.9E-16 101.8 19.3 180 154-337 101-299 (445)
241 KOG4547 WD40 repeat-containing 99.4 6.5E-11 1.4E-15 106.9 21.6 181 206-425 8-221 (541)
242 PRK11138 outer membrane biogen 99.4 4.8E-10 1E-14 104.3 27.9 261 120-423 118-393 (394)
243 PRK11138 outer membrane biogen 99.4 8.6E-10 1.9E-14 102.6 29.4 232 119-356 66-320 (394)
244 KOG2315 Predicted translation 99.4 4E-10 8.6E-15 101.2 24.8 267 114-425 36-391 (566)
245 KOG0280 Uncharacterized conser 99.4 1.7E-10 3.6E-15 95.5 20.1 217 131-350 45-286 (339)
246 TIGR02800 propeller_TolB tol-p 99.4 7.1E-10 1.5E-14 104.4 26.5 218 132-357 170-405 (417)
247 PF10282 Lactonase: Lactonase, 99.4 2.4E-08 5.3E-13 90.9 35.3 264 125-425 2-323 (345)
248 PF12937 F-box-like: F-box-lik 99.4 5.9E-13 1.3E-17 81.9 3.5 46 24-69 1-46 (47)
249 PRK05137 tolB translocation pr 99.4 5.7E-10 1.2E-14 105.1 25.1 217 105-328 194-432 (435)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.9E-09 1.3E-13 92.7 29.7 222 130-356 75-338 (352)
251 PF13360 PQQ_2: PQQ-like domai 99.3 6.4E-09 1.4E-13 89.9 29.5 216 131-355 2-237 (238)
252 KOG1064 RAVE (regulator of V-A 99.3 1.3E-11 2.7E-16 124.1 13.7 197 111-358 2207-2408(2439)
253 PRK04792 tolB translocation pr 99.3 1.8E-09 3.8E-14 101.7 27.3 220 133-359 199-435 (448)
254 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 102.6 26.8 218 133-357 180-414 (430)
255 PRK02889 tolB translocation pr 99.3 4.3E-10 9.3E-15 105.4 22.9 217 106-328 189-424 (427)
256 KOG4497 Uncharacterized conser 99.3 2.3E-11 5E-16 102.0 12.5 136 156-295 13-153 (447)
257 PF13360 PQQ_2: PQQ-like domai 99.3 1.6E-09 3.4E-14 93.7 24.4 217 171-429 2-235 (238)
258 KOG1354 Serine/threonine prote 99.3 4.4E-10 9.5E-15 95.0 17.5 281 111-427 24-362 (433)
259 TIGR02800 propeller_TolB tol-p 99.2 3.7E-09 8E-14 99.5 24.2 210 106-320 183-411 (417)
260 KOG4190 Uncharacterized conser 99.2 7.7E-11 1.7E-15 105.6 10.5 215 103-361 726-961 (1034)
261 KOG0309 Conserved WD40 repeat- 99.2 1.7E-10 3.8E-15 106.7 12.2 277 147-425 20-340 (1081)
262 PRK01029 tolB translocation pr 99.2 2.1E-08 4.5E-13 93.7 26.4 220 132-354 165-409 (428)
263 KOG1409 Uncharacterized conser 99.2 1.4E-09 3.1E-14 92.0 16.4 240 146-426 18-272 (404)
264 KOG4714 Nucleoporin [Nuclear s 99.2 6.3E-10 1.4E-14 90.6 13.7 284 97-422 20-316 (319)
265 PF10282 Lactonase: Lactonase, 99.2 6.6E-07 1.4E-11 81.6 35.2 239 116-355 40-331 (345)
266 PRK00178 tolB translocation pr 99.2 1.6E-08 3.4E-13 95.5 25.3 217 106-328 192-427 (430)
267 KOG0280 Uncharacterized conser 99.2 4.7E-09 1E-13 87.1 18.2 223 124-351 87-336 (339)
268 PRK04792 tolB translocation pr 99.2 1.5E-08 3.3E-13 95.3 24.4 212 111-328 216-446 (448)
269 COG2706 3-carboxymuconate cycl 99.2 7.8E-07 1.7E-11 76.6 31.9 216 131-348 15-274 (346)
270 KOG2315 Predicted translation 99.2 2.1E-08 4.5E-13 90.5 23.3 232 116-356 129-397 (566)
271 KOG4532 WD40-like repeat conta 99.2 2.1E-08 4.6E-13 82.2 20.9 196 165-361 86-295 (344)
272 KOG2041 WD40 repeat protein [G 99.2 2.1E-08 4.5E-13 93.0 23.2 251 112-368 14-316 (1189)
273 PLN02919 haloacid dehalogenase 99.1 2.2E-07 4.7E-12 95.9 32.3 246 156-427 572-891 (1057)
274 KOG1064 RAVE (regulator of V-A 99.1 2.2E-10 4.8E-15 115.5 10.3 172 200-378 2217-2396(2439)
275 PF04762 IKI3: IKI3 family; I 99.1 3.1E-07 6.7E-12 93.0 32.8 307 112-426 75-458 (928)
276 KOG4649 PQQ (pyrrolo-quinoline 99.1 1.4E-06 3E-11 71.6 29.7 294 124-426 25-353 (354)
277 cd00216 PQQ_DH Dehydrogenases 99.1 1.4E-07 3.1E-12 89.9 28.4 279 119-429 58-429 (488)
278 KOG2041 WD40 repeat protein [G 99.1 1.5E-08 3.3E-13 93.9 20.4 240 105-349 64-338 (1189)
279 PLN02919 haloacid dehalogenase 99.1 2.6E-07 5.7E-12 95.3 31.3 233 117-352 572-892 (1057)
280 KOG2695 WD40 repeat protein [G 99.1 6.2E-10 1.3E-14 94.2 9.4 150 207-360 228-388 (425)
281 KOG1912 WD40 repeat protein [G 99.1 1.4E-07 3.1E-12 88.4 24.4 322 104-426 47-553 (1062)
282 KOG0882 Cyclophilin-related pe 99.1 6.9E-09 1.5E-13 91.0 14.9 247 111-359 8-316 (558)
283 KOG3914 WD repeat protein WDR4 99.1 3.4E-09 7.5E-14 91.6 12.8 153 238-429 67-228 (390)
284 PF15492 Nbas_N: Neuroblastoma 99.0 1.6E-07 3.5E-12 78.3 21.6 203 157-361 3-272 (282)
285 COG4946 Uncharacterized protei 99.0 2.9E-07 6.3E-12 81.6 23.5 204 128-337 283-507 (668)
286 COG4946 Uncharacterized protei 99.0 6.4E-07 1.4E-11 79.5 25.5 192 157-354 272-483 (668)
287 KOG2695 WD40 repeat protein [G 99.0 1.7E-09 3.7E-14 91.6 8.4 152 240-427 218-379 (425)
288 PRK01029 tolB translocation pr 99.0 4.5E-07 9.7E-12 84.8 25.0 179 172-353 165-364 (428)
289 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-08 2.8E-13 83.1 12.2 133 213-346 159-316 (319)
290 KOG1354 Serine/threonine prote 99.0 1.8E-08 3.9E-13 85.5 13.0 144 206-351 178-362 (433)
291 KOG4532 WD40-like repeat conta 98.9 3.1E-07 6.8E-12 75.5 19.5 225 122-348 84-331 (344)
292 COG5354 Uncharacterized protei 98.9 2E-06 4.4E-11 77.1 26.0 254 114-375 73-374 (561)
293 KOG4190 Uncharacterized conser 98.9 2E-09 4.2E-14 96.8 7.2 153 203-358 747-916 (1034)
294 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.9 8.6E-06 1.9E-10 78.1 31.8 190 120-310 67-338 (527)
295 PF08450 SGL: SMP-30/Gluconola 98.9 1.1E-05 2.4E-10 69.9 29.7 195 157-359 5-223 (246)
296 KOG3914 WD repeat protein WDR4 98.9 2.4E-08 5.1E-13 86.6 12.0 148 206-358 77-233 (390)
297 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.8E-12 90.3 15.8 177 206-422 150-340 (1118)
298 KOG2314 Translation initiation 98.8 2E-06 4.3E-11 77.9 22.4 231 114-349 251-526 (698)
299 KOG1275 PAB-dependent poly(A) 98.8 7.7E-08 1.7E-12 91.7 14.2 179 163-346 147-340 (1118)
300 PF00646 F-box: F-box domain; 98.8 1.9E-09 4.1E-14 66.8 2.3 47 23-69 2-48 (48)
301 cd00216 PQQ_DH Dehydrogenases 98.8 4.4E-06 9.4E-11 79.8 26.1 229 120-358 107-434 (488)
302 KOG0309 Conserved WD40 repeat- 98.8 2.7E-08 5.8E-13 92.6 10.3 202 106-348 108-339 (1081)
303 PRK04043 tolB translocation pr 98.8 1.4E-05 2.9E-10 74.5 27.2 216 133-358 170-409 (419)
304 KOG1832 HIV-1 Vpr-binding prot 98.8 4.5E-09 9.7E-14 99.6 3.5 219 100-335 1089-1318(1516)
305 smart00256 FBOX A Receptor for 98.7 1.4E-08 3.1E-13 60.5 3.9 40 27-66 1-40 (41)
306 PF00400 WD40: WD domain, G-be 98.7 6.2E-08 1.4E-12 57.0 6.0 39 307-346 1-39 (39)
307 COG5170 CDC55 Serine/threonine 98.7 7.1E-07 1.5E-11 75.0 14.3 236 111-348 25-367 (460)
308 KOG2314 Translation initiation 98.7 1.3E-05 2.8E-10 72.8 22.9 227 117-348 215-478 (698)
309 COG2706 3-carboxymuconate cycl 98.7 9.6E-05 2.1E-09 64.0 26.6 175 171-350 15-223 (346)
310 PF00400 WD40: WD domain, G-be 98.7 1.1E-07 2.3E-12 55.9 6.3 39 264-303 1-39 (39)
311 PF08450 SGL: SMP-30/Gluconola 98.7 0.0002 4.4E-09 62.0 29.3 214 117-336 4-243 (246)
312 PF15492 Nbas_N: Neuroblastoma 98.6 2.9E-05 6.3E-10 65.1 21.8 196 121-316 7-270 (282)
313 KOG2066 Vacuolar assembly/sort 98.6 2.1E-06 4.6E-11 81.2 15.9 150 197-360 43-199 (846)
314 PF04762 IKI3: IKI3 family; I 98.6 0.00023 5E-09 72.6 31.5 194 152-351 76-336 (928)
315 KOG0882 Cyclophilin-related pe 98.6 1.5E-06 3.4E-11 76.6 13.8 258 162-427 19-308 (558)
316 PRK02888 nitrous-oxide reducta 98.6 2.3E-05 5E-10 74.1 22.4 106 253-362 295-428 (635)
317 PF07433 DUF1513: Protein of u 98.6 0.00022 4.9E-09 61.7 26.5 200 156-358 9-257 (305)
318 KOG1912 WD40 repeat protein [G 98.6 1.3E-05 2.9E-10 75.7 20.3 217 114-361 17-273 (1062)
319 COG5354 Uncharacterized protei 98.6 0.00011 2.5E-09 66.2 25.0 233 111-350 31-308 (561)
320 PRK04043 tolB translocation pr 98.6 7.4E-05 1.6E-09 69.6 25.2 187 114-306 189-401 (419)
321 COG5170 CDC55 Serine/threonine 98.5 7.6E-06 1.6E-10 69.0 14.8 207 152-361 27-323 (460)
322 KOG2066 Vacuolar assembly/sort 98.5 8.3E-06 1.8E-10 77.4 16.6 172 162-348 48-233 (846)
323 KOG1645 RING-finger-containing 98.5 3E-05 6.6E-10 67.8 18.2 238 107-348 188-461 (463)
324 KOG1920 IkappaB kinase complex 98.4 0.00019 4.1E-09 71.6 25.2 224 113-351 69-325 (1265)
325 PF06433 Me-amine-dh_H: Methyl 98.4 0.0005 1.1E-08 60.3 25.2 222 132-358 67-330 (342)
326 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00065 1.4E-08 56.4 24.9 182 168-357 29-215 (354)
327 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.00052 1.1E-08 66.0 27.6 239 119-359 117-501 (527)
328 PF11768 DUF3312: Protein of u 98.4 0.00016 3.5E-09 66.8 22.3 133 214-350 185-331 (545)
329 PF07433 DUF1513: Protein of u 98.4 0.00015 3.2E-09 62.8 20.4 190 237-427 8-250 (305)
330 KOG2114 Vacuolar assembly/sort 98.4 5.6E-05 1.2E-09 72.5 18.7 200 155-357 27-252 (933)
331 KOG1645 RING-finger-containing 98.3 7E-05 1.5E-09 65.6 17.1 222 134-358 175-429 (463)
332 KOG3621 WD40 repeat-containing 98.3 6.5E-05 1.4E-09 70.6 17.9 203 151-359 33-256 (726)
333 KOG2120 SCF ubiquitin ligase, 98.3 3.8E-07 8.3E-12 76.8 3.0 56 15-70 89-144 (419)
334 KOG2114 Vacuolar assembly/sort 98.3 0.00036 7.8E-09 67.2 22.7 202 114-317 27-256 (933)
335 PF00780 CNH: CNH domain; Int 98.3 0.0024 5.1E-08 56.4 27.8 226 121-359 6-266 (275)
336 KOG1832 HIV-1 Vpr-binding prot 98.2 9.3E-07 2E-11 84.4 4.1 149 225-379 1093-1249(1516)
337 PF04053 Coatomer_WDAD: Coatom 98.2 0.0017 3.6E-08 60.7 24.7 141 152-305 33-173 (443)
338 PF06433 Me-amine-dh_H: Methyl 98.2 0.0039 8.6E-08 54.9 28.6 256 132-428 17-324 (342)
339 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00071 1.5E-08 48.9 15.6 88 206-300 18-109 (111)
340 KOG3617 WD40 and TPR repeat-co 98.1 0.00012 2.6E-09 70.2 14.9 108 195-305 19-131 (1416)
341 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0042 9.1E-08 57.9 24.6 173 196-375 83-275 (410)
342 KOG3621 WD40 repeat-containing 98.0 0.0014 3.1E-08 61.9 20.4 147 115-263 38-198 (726)
343 PF11768 DUF3312: Protein of u 98.0 7.5E-05 1.6E-09 69.0 11.7 73 231-306 257-330 (545)
344 PRK02888 nitrous-oxide reducta 98.0 0.00087 1.9E-08 63.7 18.6 170 129-306 212-405 (635)
345 PF00780 CNH: CNH domain; Int 98.0 0.0045 9.7E-08 54.6 22.5 218 199-427 3-258 (275)
346 COG3391 Uncharacterized conser 98.0 0.014 3.1E-07 54.0 26.6 204 154-361 76-296 (381)
347 PF03178 CPSF_A: CPSF A subuni 98.0 0.0035 7.5E-08 56.7 21.8 172 132-305 2-202 (321)
348 TIGR03074 PQQ_membr_DH membran 97.9 0.0093 2E-07 59.6 25.7 110 203-314 194-353 (764)
349 PF08596 Lgl_C: Lethal giant l 97.9 0.0071 1.5E-07 55.7 22.4 193 154-355 4-250 (395)
350 KOG2997 F-box protein FBX9 [Ge 97.9 9.5E-06 2.1E-10 68.8 3.4 49 24-72 107-160 (366)
351 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.011 2.3E-07 54.4 23.7 242 131-373 22-340 (353)
352 PF08596 Lgl_C: Lethal giant l 97.9 0.01 2.3E-07 54.7 22.9 222 96-337 70-325 (395)
353 PF03178 CPSF_A: CPSF A subuni 97.9 0.0042 9.1E-08 56.2 20.4 173 213-425 2-203 (321)
354 TIGR03074 PQQ_membr_DH membran 97.8 0.016 3.5E-07 58.0 25.3 222 121-358 193-487 (764)
355 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0021 4.5E-08 46.5 13.7 99 115-217 2-110 (111)
356 PF08553 VID27: VID27 cytoplas 97.8 0.00094 2E-08 65.9 15.2 136 210-348 501-647 (794)
357 COG3386 Gluconolactonase [Carb 97.8 0.026 5.6E-07 50.1 24.5 195 159-360 32-254 (307)
358 PF05096 Glu_cyclase_2: Glutam 97.7 0.022 4.7E-07 48.6 25.0 179 115-295 47-250 (264)
359 KOG1920 IkappaB kinase complex 97.7 0.01 2.3E-07 59.9 21.3 194 153-353 70-278 (1265)
360 PHA02713 hypothetical protein; 97.7 0.0056 1.2E-07 59.6 19.2 182 205-427 306-536 (557)
361 PF04053 Coatomer_WDAD: Coatom 97.7 0.032 7E-07 52.3 23.1 224 105-348 25-262 (443)
362 PF08553 VID27: VID27 cytoplas 97.6 0.0024 5.2E-08 63.1 15.9 97 206-304 545-646 (794)
363 PF04841 Vps16_N: Vps16, N-ter 97.6 0.059 1.3E-06 50.4 29.2 185 133-324 62-266 (410)
364 KOG4640 Anaphase-promoting com 97.6 0.00038 8.2E-09 64.8 9.4 91 234-327 21-114 (665)
365 KOG1008 Uncharacterized conser 97.6 2E-05 4.4E-10 73.0 1.2 138 206-347 73-224 (783)
366 PF05096 Glu_cyclase_2: Glutam 97.6 0.035 7.7E-07 47.3 25.1 147 206-358 59-213 (264)
367 KOG4640 Anaphase-promoting com 97.5 0.00069 1.5E-08 63.1 9.4 79 276-356 21-100 (665)
368 smart00320 WD40 WD40 repeats. 97.5 0.00037 7.9E-09 39.8 5.3 38 308-346 3-40 (40)
369 COG3391 Uncharacterized conser 97.4 0.096 2.1E-06 48.5 27.1 236 134-374 13-266 (381)
370 smart00320 WD40 WD40 repeats. 97.4 0.00058 1.3E-08 38.9 5.7 38 265-303 3-40 (40)
371 KOG2444 WD40 repeat protein [G 97.4 0.00029 6.3E-09 57.4 5.4 142 246-425 32-178 (238)
372 KOG2444 WD40 repeat protein [G 97.3 0.00031 6.8E-09 57.2 4.7 140 206-348 33-177 (238)
373 PHA02713 hypothetical protein; 97.3 0.032 6.9E-07 54.5 19.0 218 133-355 273-540 (557)
374 COG0823 TolB Periplasmic compo 97.3 0.027 5.8E-07 52.5 17.5 182 153-339 194-390 (425)
375 COG0823 TolB Periplasmic compo 97.2 0.038 8.2E-07 51.6 17.9 160 132-294 218-388 (425)
376 PF14583 Pectate_lyase22: Olig 97.2 0.15 3.2E-06 46.1 31.5 233 102-339 20-303 (386)
377 COG3386 Gluconolactonase [Carb 97.2 0.14 3.1E-06 45.5 22.3 209 124-337 39-274 (307)
378 KOG4441 Proteins containing BT 97.2 0.069 1.5E-06 52.1 19.9 222 124-351 287-549 (571)
379 KOG3617 WD40 and TPR repeat-co 97.2 0.00077 1.7E-08 65.0 6.2 107 238-348 20-131 (1416)
380 COG3490 Uncharacterized protei 97.1 0.038 8.2E-07 47.0 14.7 190 237-427 71-313 (366)
381 PF06977 SdiA-regulated: SdiA- 97.1 0.14 3.1E-06 43.8 23.2 195 105-302 14-247 (248)
382 KOG2079 Vacuolar assembly/sort 97.1 0.002 4.3E-08 64.0 8.2 103 244-348 99-203 (1206)
383 KOG4441 Proteins containing BT 97.1 0.099 2.2E-06 51.0 19.9 214 172-426 301-548 (571)
384 KOG2079 Vacuolar assembly/sort 97.1 0.0033 7.3E-08 62.4 9.5 75 286-361 98-173 (1206)
385 KOG2395 Protein involved in va 97.1 0.01 2.2E-07 54.6 11.8 137 124-262 348-500 (644)
386 KOG2395 Protein involved in va 97.1 0.014 3.1E-07 53.7 12.6 139 206-348 349-500 (644)
387 KOG1008 Uncharacterized conser 97.1 0.00033 7.1E-09 65.3 2.4 176 168-348 76-275 (783)
388 COG3490 Uncharacterized protei 97.0 0.17 3.7E-06 43.2 20.5 233 114-357 36-319 (366)
389 PF02897 Peptidase_S9_N: Proly 97.0 0.34 7.4E-06 45.6 30.6 233 118-353 129-409 (414)
390 PF14583 Pectate_lyase22: Olig 96.9 0.3 6.5E-06 44.3 25.4 215 138-354 16-278 (386)
391 COG1520 FOG: WD40-like repeat 96.9 0.35 7.5E-06 44.8 29.2 198 119-316 65-279 (370)
392 PF06977 SdiA-regulated: SdiA- 96.8 0.22 4.7E-06 42.8 17.4 119 228-348 16-147 (248)
393 KOG4341 F-box protein containi 96.8 0.00067 1.4E-08 60.5 1.9 51 19-69 67-117 (483)
394 KOG1897 Damage-specific DNA bi 96.8 0.7 1.5E-05 46.4 26.1 228 123-356 596-864 (1096)
395 KOG4499 Ca2+-binding protein R 96.7 0.27 5.8E-06 40.8 18.3 85 277-362 159-255 (310)
396 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0061 1.3E-07 36.8 5.2 35 275-310 11-45 (47)
397 PRK13616 lipoprotein LpqB; Pro 96.7 0.14 3E-06 50.1 17.1 102 234-344 350-472 (591)
398 COG3823 Glutamine cyclotransfe 96.7 0.23 5E-06 40.4 15.1 174 117-293 50-247 (262)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.57 1.2E-05 43.4 23.3 42 319-361 309-350 (415)
400 KOG2280 Vacuolar assembly/sort 96.4 0.26 5.7E-06 47.8 16.5 182 130-314 62-255 (829)
401 PHA03098 kelch-like protein; P 96.4 0.33 7.1E-06 47.5 18.2 93 214-308 312-417 (534)
402 KOG3926 F-box proteins [Amino 96.4 0.0045 9.8E-08 51.6 4.1 56 17-72 195-251 (332)
403 PF05694 SBP56: 56kDa selenium 96.3 0.34 7.3E-06 44.4 15.4 188 162-350 86-344 (461)
404 PHA03098 kelch-like protein; P 96.2 0.48 1E-05 46.3 18.0 184 122-308 295-514 (534)
405 COG1520 FOG: WD40-like repeat 96.2 1 2.2E-05 41.7 23.7 199 159-359 65-279 (370)
406 COG3204 Uncharacterized protei 96.2 0.59 1.3E-05 40.4 15.6 118 230-348 82-210 (316)
407 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.2 2.6E-05 41.4 31.6 137 124-261 39-203 (418)
408 KOG1897 Damage-specific DNA bi 96.0 2 4.3E-05 43.4 26.8 230 113-348 354-613 (1096)
409 KOG4499 Ca2+-binding protein R 96.0 0.73 1.6E-05 38.3 18.4 100 236-335 160-271 (310)
410 PHA02790 Kelch-like protein; P 95.9 0.92 2E-05 43.6 18.1 179 206-427 275-473 (480)
411 PF02897 Peptidase_S9_N: Proly 95.9 1.6 3.4E-05 41.1 27.3 199 156-358 128-367 (414)
412 PRK13616 lipoprotein LpqB; Pro 95.8 2.2 4.8E-05 41.9 19.9 181 153-343 351-563 (591)
413 KOG2280 Vacuolar assembly/sort 95.7 0.77 1.7E-05 44.8 16.0 48 214-262 65-112 (829)
414 PF14781 BBS2_N: Ciliary BBSom 95.5 0.76 1.6E-05 34.7 14.6 106 124-229 12-133 (136)
415 PF12894 Apc4_WD40: Anaphase-p 95.5 0.059 1.3E-06 32.5 5.2 34 318-353 12-45 (47)
416 COG3823 Glutamine cyclotransfe 95.4 1.2 2.6E-05 36.4 14.4 190 144-337 36-248 (262)
417 PHA02790 Kelch-like protein; P 95.2 3.2 7E-05 39.9 19.0 181 121-307 270-472 (480)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.54 1.2E-05 43.6 12.6 87 275-361 307-411 (415)
419 KOG2247 WD40 repeat-containing 95.1 0.0038 8.2E-08 56.8 -1.3 135 124-259 48-185 (615)
420 KOG1916 Nuclear protein, conta 94.6 0.045 9.8E-07 53.8 4.3 115 206-353 198-328 (1283)
421 PF08728 CRT10: CRT10; InterP 94.4 3.6 7.9E-05 40.8 16.8 102 244-347 114-245 (717)
422 PF07569 Hira: TUP1-like enhan 94.3 0.46 9.9E-06 40.1 9.4 69 114-182 14-97 (219)
423 PF12234 Rav1p_C: RAVE protein 94.2 3.3 7.2E-05 40.6 16.0 101 245-348 42-156 (631)
424 PF14781 BBS2_N: Ciliary BBSom 94.1 1.9 4.1E-05 32.6 14.4 108 245-356 11-133 (136)
425 PF00930 DPPIV_N: Dipeptidyl p 94.1 4.7 0.0001 37.0 23.8 222 112-337 42-346 (353)
426 COG5167 VID27 Protein involved 94.1 0.98 2.1E-05 42.1 11.4 137 124-262 482-632 (776)
427 PF10313 DUF2415: Uncharacteri 94.0 0.24 5.2E-06 29.0 4.9 30 277-306 2-34 (43)
428 COG5167 VID27 Protein involved 94.0 5.5 0.00012 37.4 17.5 137 206-348 483-632 (776)
429 KOG1916 Nuclear protein, conta 93.6 0.13 2.8E-06 50.8 5.3 147 212-361 110-283 (1283)
430 KOG3630 Nuclear pore complex, 93.3 0.76 1.6E-05 47.0 10.1 125 207-335 118-260 (1405)
431 PF02333 Phytase: Phytase; In 93.1 7.1 0.00015 35.8 23.5 193 162-358 67-301 (381)
432 PF10313 DUF2415: Uncharacteri 93.0 0.61 1.3E-05 27.3 5.5 32 318-350 1-35 (43)
433 PF13013 F-box-like_2: F-box-l 93.0 0.19 4E-06 36.7 4.2 30 23-52 21-50 (109)
434 PF14870 PSII_BNR: Photosynthe 92.9 6.6 0.00014 34.9 32.5 141 206-352 117-264 (302)
435 PF14761 HPS3_N: Hermansky-Pud 92.8 4.9 0.00011 33.3 18.3 156 238-424 22-214 (215)
436 PF07569 Hira: TUP1-like enhan 92.8 1.3 2.8E-05 37.4 9.6 72 235-308 14-98 (219)
437 PF05694 SBP56: 56kDa selenium 92.7 8.3 0.00018 35.8 21.5 183 124-306 89-343 (461)
438 KOG2063 Vacuolar assembly/sort 92.6 12 0.00025 38.5 17.2 68 117-184 21-100 (877)
439 PF15390 DUF4613: Domain of un 92.6 4.9 0.00011 38.5 13.6 68 237-306 116-187 (671)
440 COG5276 Uncharacterized conser 91.8 8.2 0.00018 33.6 28.0 183 162-349 95-286 (370)
441 PF06881 Elongin_A: RNA polyme 91.6 0.36 7.9E-06 35.5 4.4 66 24-91 4-74 (109)
442 PF10168 Nup88: Nuclear pore c 91.6 5.6 0.00012 40.1 13.8 72 277-350 86-181 (717)
443 PF12234 Rav1p_C: RAVE protein 91.4 5.9 0.00013 39.0 13.3 96 208-305 46-156 (631)
444 COG4590 ABC-type uncharacteriz 90.9 2.6 5.5E-05 38.8 9.6 156 155-313 224-394 (733)
445 KOG3630 Nuclear pore complex, 90.3 4.7 0.0001 41.7 11.8 121 235-358 102-237 (1405)
446 PF11715 Nup160: Nucleoporin N 89.9 2.4 5.1E-05 41.7 9.7 39 320-359 217-259 (547)
447 PF10168 Nup88: Nuclear pore c 89.4 15 0.00034 37.1 14.8 91 318-426 85-181 (717)
448 COG3204 Uncharacterized protei 89.3 14 0.00031 32.3 17.8 181 108-289 81-297 (316)
449 PF05935 Arylsulfotrans: Aryls 89.1 22 0.00048 34.2 17.4 142 211-359 126-312 (477)
450 PRK14131 N-acetylneuraminic ac 88.8 20 0.00043 33.3 22.7 40 213-252 189-230 (376)
451 KOG1900 Nuclear pore complex, 88.7 4.7 0.0001 42.3 10.6 152 251-425 96-273 (1311)
452 KOG1900 Nuclear pore complex, 88.4 9.4 0.0002 40.3 12.5 136 209-349 95-273 (1311)
453 KOG2247 WD40 repeat-containing 88.1 0.061 1.3E-06 49.3 -2.4 142 199-345 42-185 (615)
454 PLN03215 ascorbic acid mannose 87.7 0.6 1.3E-05 42.4 3.5 38 23-60 3-41 (373)
455 PRK13684 Ycf48-like protein; P 87.6 22 0.00047 32.4 31.5 154 233-424 172-331 (334)
456 TIGR03547 muta_rot_YjhT mutatr 87.4 23 0.0005 32.4 22.6 40 213-252 168-209 (346)
457 smart00564 PQQ beta-propeller 87.2 2.2 4.7E-05 23.1 4.5 28 121-148 5-32 (33)
458 COG3292 Predicted periplasmic 87.1 29 0.00064 33.4 16.4 67 113-181 165-234 (671)
459 TIGR03548 mutarot_permut cycli 86.8 24 0.00051 31.9 18.7 135 118-253 69-233 (323)
460 TIGR03548 mutarot_permut cycli 86.6 24 0.00053 31.8 20.6 65 202-266 123-198 (323)
461 TIGR02276 beta_rpt_yvtn 40-res 86.4 4.5 9.8E-05 23.2 5.9 36 124-159 5-41 (42)
462 KOG4460 Nuclear pore complex, 86.2 17 0.00038 34.4 11.8 94 319-429 105-203 (741)
463 KOG1983 Tomosyn and related SN 85.8 42 0.00091 35.6 15.9 106 151-262 35-144 (993)
464 PF03022 MRJP: Major royal jel 85.8 25 0.00054 31.2 19.4 165 214-380 35-255 (287)
465 TIGR02276 beta_rpt_yvtn 40-res 85.7 5 0.00011 23.0 5.8 32 328-359 1-33 (42)
466 COG5276 Uncharacterized conser 85.6 24 0.00052 30.9 24.0 150 114-265 88-244 (370)
467 TIGR02604 Piru_Ver_Nterm putat 85.4 31 0.00067 31.9 14.9 102 234-338 72-203 (367)
468 PF14761 HPS3_N: Hermansky-Pud 85.2 21 0.00045 29.8 12.9 49 288-338 29-79 (215)
469 KOG4460 Nuclear pore complex, 85.1 21 0.00046 33.9 11.8 77 277-354 105-204 (741)
470 PF07995 GSDH: Glucose / Sorbo 84.7 31 0.00067 31.4 13.2 103 235-339 3-134 (331)
471 PF12768 Rax2: Cortical protei 84.3 18 0.00038 31.9 10.7 94 253-348 15-123 (281)
472 PRK14131 N-acetylneuraminic ac 84.3 35 0.00075 31.7 21.2 26 400-425 338-369 (376)
473 TIGR02604 Piru_Ver_Nterm putat 84.0 36 0.00077 31.5 15.8 115 255-375 48-198 (367)
474 KOG1898 Splicing factor 3b, su 84.0 30 0.00066 35.9 13.1 141 255-430 854-1010(1205)
475 PF10647 Gmad1: Lipoprotein Lp 83.2 30 0.00065 30.0 16.5 109 235-348 25-144 (253)
476 PF14269 Arylsulfotran_2: Aryl 82.9 34 0.00074 30.5 15.7 133 250-422 21-218 (299)
477 TIGR03032 conserved hypothetic 82.8 34 0.00074 30.4 12.4 53 238-294 207-259 (335)
478 PF12341 DUF3639: Protein of u 82.8 3.4 7.4E-05 21.5 3.4 25 398-422 3-27 (27)
479 smart00564 PQQ beta-propeller 82.7 3.7 7.9E-05 22.1 4.0 26 331-356 7-32 (33)
480 KOG4408 Putative Mg2+ and Co2+ 82.2 0.24 5.3E-06 43.1 -1.4 52 21-72 5-56 (386)
481 PF08728 CRT10: CRT10; InterP 82.1 31 0.00068 34.6 12.4 98 206-304 117-245 (717)
482 PRK13684 Ycf48-like protein; P 81.2 43 0.00093 30.5 24.4 137 206-347 186-330 (334)
483 PF11715 Nup160: Nucleoporin N 81.2 9.5 0.00021 37.5 9.0 37 277-313 216-256 (547)
484 PF15390 DUF4613: Domain of un 80.9 45 0.00097 32.4 12.4 113 234-348 57-186 (671)
485 PRK10115 protease 2; Provision 80.8 69 0.0015 32.6 31.0 213 133-351 154-397 (686)
486 PLN02153 epithiospecifier prot 80.4 46 0.001 30.3 17.3 23 286-308 85-112 (341)
487 TIGR03547 muta_rot_YjhT mutatr 80.3 47 0.001 30.3 20.9 16 401-416 317-332 (346)
488 PLN02193 nitrile-specifier pro 80.1 58 0.0013 31.3 22.1 133 214-351 194-354 (470)
489 TIGR03118 PEPCTERM_chp_1 conse 79.8 43 0.00094 29.6 20.6 196 196-427 27-282 (336)
490 TIGR03118 PEPCTERM_chp_1 conse 79.6 44 0.00095 29.6 23.5 207 116-324 26-304 (336)
491 KOG2377 Uncharacterized conser 79.3 56 0.0012 30.6 12.4 153 116-268 26-191 (657)
492 PF07250 Glyoxal_oxid_N: Glyox 78.9 41 0.00089 28.9 11.0 144 215-361 48-210 (243)
493 PF01011 PQQ: PQQ enzyme repea 78.8 7.9 0.00017 21.9 4.6 27 246-272 2-28 (38)
494 PF10433 MMS1_N: Mono-function 78.6 68 0.0015 31.2 22.0 222 162-426 221-478 (504)
495 KOG3522 Predicted guanine nucl 78.6 26 0.00056 35.4 10.4 194 202-427 546-751 (925)
496 PF01011 PQQ: PQQ enzyme repea 78.5 9.8 0.00021 21.5 5.0 29 332-360 2-30 (38)
497 PLN02153 epithiospecifier prot 78.2 54 0.0012 29.9 21.8 93 214-308 51-170 (341)
498 PF13570 PQQ_3: PQQ-like domai 78.1 10 0.00023 21.6 5.1 25 117-141 16-40 (40)
499 PF09372 PRANC: PRANC domain; 76.6 2.3 4.9E-05 30.5 2.3 26 22-47 70-95 (97)
500 PF07676 PD40: WD40-like Beta 75.8 12 0.00026 21.1 5.4 29 274-302 7-38 (39)
No 1
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-52 Score=347.53 Aligned_cols=371 Identities=21% Similarity=0.309 Sum_probs=305.4
Q ss_pred CCCCccCCc----HHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCC----------CC--------
Q 014104 20 PRATIESLN----GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS----------NT-------- 77 (430)
Q Consensus 20 ~~~~~~~Lp----~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~----------~~-------- 77 (430)
-.+|++.|| +++.+.||+|||..+|+.|..|||.|+.+..+..+|+.|+.+....- ++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r 150 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNR 150 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCC
Confidence 358999999 99999999999999999999999999999999999999998775211 11
Q ss_pred --------CCCchHHHHHHHH-cccchhhcccCCEeEEEEec---cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeE
Q 014104 78 --------SGSSMRLHLEELA-MKHHRFALEEGRIDIDQWKA---HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCV 145 (430)
Q Consensus 78 --------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 145 (430)
...+...|-.-+. ......+|..|...+.++.. ..+.|+|+.++|+.+++|..|.+|+|||.++.+++
T Consensus 151 ~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~ 230 (499)
T KOG0281|consen 151 PNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL 230 (499)
T ss_pred CCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHH
Confidence 0011111111111 12235789999999998875 45789999999999999999999999999999999
Q ss_pred EeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe
Q 014104 146 EEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
+.+.+| ...++++..+.+.++ |++|.+|++||+++++.+- ..-+|...++.+.+....+++++.|.++.+||+.+..
T Consensus 231 ~~L~GH-tGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~-tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 231 KILTGH-TGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLN-TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred HhhhcC-CCcEEeeeccceEEEecCCCceEEEEeccCCchhh-HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch
Confidence 888886 445677778888888 9999999999999998542 2223334567788888899999999999999998764
Q ss_pred ---eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 014104 225 ---CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 225 ---~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 301 (430)
+.+.+.+|...|+.+.|+ +.++++++.|.+|++|++.+++.++++.+ |..+|-|+.+ .|+++++|+.|.+|++
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQY--r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRL 384 (499)
T ss_pred HHHHHHHHhhhhhheeeeccc-cceEEEecCCceEEEEeccceeeehhhhc-ccccceehhc--cCeEEEecCCCceEEE
Confidence 345677999999999995 45999999999999999999999999998 8889999988 7899999999999999
Q ss_pred EeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 302 WDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 302 ~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
||+..|.++..+++|..-|.++. | |.+.+++|+.||+|++||+.++..-+....
T Consensus 385 wdi~~G~cLRvLeGHEeLvRciR-F--d~krIVSGaYDGkikvWdl~aaldpra~~~----------------------- 438 (499)
T KOG0281|consen 385 WDIECGACLRVLEGHEELVRCIR-F--DNKRIVSGAYDGKIKVWDLQAALDPRAPAS----------------------- 438 (499)
T ss_pred EeccccHHHHHHhchHHhhhhee-e--cCceeeeccccceEEEEecccccCCccccc-----------------------
Confidence 99999999999999999999998 6 678999999999999999986643322211
Q ss_pred ccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..++.. ...|++.|..+.||...+++++.|.+|.|||+..+
T Consensus 439 ---~~Cl~~-lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 ---TLCLRT-LVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ---chHHHh-hhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 011111 13578899999999999999999999999999765
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-50 Score=335.59 Aligned_cols=314 Identities=18% Similarity=0.223 Sum_probs=272.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.+-..+.||.++|.|+.| |++ .|+||+.|.++|+||+.+..+..+.++| +-+.+++|+|||+.|+ ++.+|+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 355678999999999999 556 9999999999999999999999999988 5688899999999999 99999999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEc--C-----CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEe
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYF--D-----PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS 251 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 251 (430)
.+++++.-....+|...+.++++. + ..+++++.||+|+|||+..++++..+.+|+.+|+|+.|--..++++|+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 999987666555555444554432 1 239999999999999999999999999999999999997668999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe-----------cCCC-------------------------EEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN-----------PCSR-------------------------LVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~ 295 (430)
.|++|++|+...|.+.+.+++ |...|+.++.+ |.++ .|++|+.
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkG-HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKG-HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCceEEEEEccchhHHHhhcc-cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999998 88899988876 3333 4999999
Q ss_pred CCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------e
Q 014104 296 AGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------S 364 (430)
Q Consensus 296 dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~ 364 (430)
|.++.+|+... .+++....+|...|+.+. ||||+++++++|.|..|++||-++|+.+.+|.+|-+.+ .
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~-fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVS-FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEE-ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 99999999764 568889999999999999 99999999999999999999999999999999988766 4
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
++++|.|.++++|++.... +..-..+|.+.|.++.| ||.++++|+.|..+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkK----l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK----LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeee----ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5666667777777665432 33334679999999999 799999999999999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=281.20 Aligned_cols=281 Identities=20% Similarity=0.237 Sum_probs=246.4
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..++|+||.+.|.++.|. |. +++++|.||.+.|||.-+...++-++.+ .-+...+|+|.++.++ ++.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 347899999999999994 44 9999999999999999988888888876 4467799999999999 899999999999
Q ss_pred CCC--c---ccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEe
Q 014104 180 NGL--R---SVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGS 251 (430)
Q Consensus 180 ~~~--~---~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~ 251 (430)
.+. + .+.....+|.....|..+.+ ..|++++.|.+..+||+++++.+..+.+|.+.|.+++++| + +.+++|+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 865 2 23334455555555555544 3499999999999999999999999999999999999998 4 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~ 329 (430)
-|+..++||++.+.++++|.+ |+..|.+++|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++ ||..
T Consensus 207 cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~-FS~S 284 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA-FSKS 284 (343)
T ss_pred cccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE-Eccc
Confidence 999999999999999999998 8999999999999999999999999999999999888777633 26899999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
|++|++|..|..+.+||.-.++.+..+.+|.+ .|+|+.. ||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN------------------------------------RvScl~~s~DG~ 328 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN------------------------------------RVSCLGVSPDGM 328 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCC------------------------------------eeEEEEECCCCc
Confidence 99999999999999999999999998877555 7777666 677
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
.++|||.|..+|||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 799999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-44 Score=304.21 Aligned_cols=275 Identities=15% Similarity=0.241 Sum_probs=247.6
Q ss_pred eccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC--CCEEE-EEeCCeEEEEEcCCC
Q 014104 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD--ESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 109 ~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~-~~~~~~i~vwd~~~~ 182 (430)
-|-+.+|..+.|+ ++ .|+|||.+|.+++|+..+...+.++.+| ..+..+.|+|. +..++ ++.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3567889999994 44 9999999999999999999999999998 55677999996 45677 899999999999987
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
..+ +..|. ..+..+.+.+.+..|++++.|.+-++||+++++.+...++|...|.+++|+++ .++++|+.|..-+||
T Consensus 252 ~~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 TPLQDLEGHL-ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred cchhhhhcch-hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 643 44444 34456788888999999999999999999999999999999999999999976 899999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CCCeEEEEcC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DTSTLVVGGI 338 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~ 338 (430)
|+++|+++..+.+ |..+|.+|+|+|+|..||+|+.|++++|||++..+++..+.+|.+-|+.+. |+| .|.+|+|++.
T Consensus 331 DlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk-~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVK-YSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheE-ecccCCeEEEEccc
Confidence 9999999999998 999999999999999999999999999999999999999999999999999 888 7889999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|++++||...++.+++++.+|.+ .|.++++ |+.+++|++.|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~------------------------------------kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEG------------------------------------KVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred CcceeeecCCCcccchhhcCCcc------------------------------------ceEEEEeccCCceEEEeccCc
Confidence 99999999999999999977555 7777777 688899999999
Q ss_pred eEEEEE
Q 014104 417 YIRLWK 422 (430)
Q Consensus 417 ~v~vw~ 422 (430)
++|+|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 5
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=322.25 Aligned_cols=367 Identities=20% Similarity=0.285 Sum_probs=306.0
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCC---------C---CCchHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNT---------S---GSSMRLH 85 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~---------~---~~~~~~~ 85 (430)
...++|+..||.|+..+||+||++++|.++++||+.|+.+++++..|.+.+.+......+ . ..++++.
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~ 181 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSF 181 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhh
Confidence 347899999999999999999999999999999999999999999999888887644332 1 1344444
Q ss_pred HHHHHcccchhhcccCCEe-EEEEec-cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEe-eecC-CceeEEEEec
Q 014104 86 LEELAMKHHRFALEEGRID-IDQWKA-HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEE-YSLP-NAASLVDFDF 161 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~l~~-h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~~ 161 (430)
+..- ......|.....+ .+.+.+ |...+.+..+.++++++++.|++|++||..++..+.. +.+| +.+..+++..
T Consensus 182 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~ 259 (537)
T KOG0274|consen 182 YRRR--FRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS 259 (537)
T ss_pred hhhh--hhccccccccccccceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec
Confidence 3221 1112333333332 344454 5667888888989999999999999999999998888 8887 5567788877
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
-+..++ ++.|.++++||..+++.+.... ++...+.++...+..+++|+.|.+|++|++++++++..+.+|.++|.++.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 677777 8889999999999998643333 44455677777777799999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCc
Q 014104 241 LSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNV 319 (430)
Q Consensus 241 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 319 (430)
.+ +.++++|+.|++|++||+.+++++.++.+ |...|+++.+.+. ..+++|+.|++|++||+++. +++..+.+|.+.
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 97 77999999999999999999999999999 9999999988654 89999999999999999999 999999999998
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
+.++. ..+++|++++.|++|++||..++++++++..+ |...|
T Consensus 416 v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-----------------------------------~~~~v 457 (537)
T KOG0274|consen 416 VSSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-----------------------------------HVGGV 457 (537)
T ss_pred ccccc---cccceeEeccccccEEEeecccCceeeeeccC-----------------------------------CcccE
Confidence 87776 46789999999999999999999999999762 23477
Q ss_pred eEEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 400 TCLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 400 ~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+++++....+++++.||++++||+.+++.
T Consensus 458 ~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 458 SALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecCcceEEEEecCCeeEEEecccCch
Confidence 77777777799999999999999998764
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-40 Score=264.40 Aligned_cols=266 Identities=17% Similarity=0.281 Sum_probs=231.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc----cccCCCCceeeeeE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRS----VFPSREGTFMKGLC 198 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----~~~~~~~~~~~~~~ 198 (430)
+|+|+|.|.+||+|...+|.+..++.++ ..+..+.+.|+++.|+++....|++||++++.. .+..+.+. +..+.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN-VtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN-VTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc-eEEEE
Confidence 8999999999999999999999999986 567889999999999999999999999998764 34444444 45677
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|..++..+++|++||+++|||++...+.+.++ |.++|+++..+|+ ..|++|..+|.|++||+.+..+...+.......
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 88888889999999999999999977777776 7799999999998 689999999999999999887777776546679
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTM------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG- 350 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~- 350 (430)
|.++.+.|+|.+|+.+...|..++|++-+. +++..++.|.+.+.... +||++++|+++|.|.+++||++++.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCCceEEEEecCCce
Confidence 999999999999999999999999998753 45667889999999998 9999999999999999999999876
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+....+ .+|+..++..+| |++||+||+.|+.+++|++..+++
T Consensus 249 kle~~l------------------------------------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 249 KLELVL------------------------------------TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred eeEEEe------------------------------------ecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 333333 346668998888 699999999999999999999875
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-41 Score=283.42 Aligned_cols=284 Identities=18% Similarity=0.193 Sum_probs=244.9
Q ss_pred HHcccchhhcccCCE-------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE-EeeecC-
Q 014104 89 LAMKHHRFALEEGRI-------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-EEYSLP- 151 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~~~~- 151 (430)
.+|.+.+..+..|.. +..+++||...|.|+++ ||| .||+|+.||+|++||.++|+++ ..+.+|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence 455666666666654 57789999999999999 677 9999999999999999988766 556666
Q ss_pred CceeEEEEec-----CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe
Q 014104 152 NAASLVDFDF-----DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~-----~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~ 224 (430)
..+..++|.| ..++|+ ++.||.++|||+..+..++ ...+|...+.|+...+.. +++|+.|++|++|+...|.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcCCceEEecCCCceEEEEEccchh
Confidence 4567788766 456777 8889999999999877543 233455567888887655 9999999999999999999
Q ss_pred eeEEeecCCCCeEEEEecC------------C-------------------------CEEEEEeCCCeEEEEeCCC-Cce
Q 014104 225 CSQIIRMHCAPVTSLSLSE------------D-------------------------QLIISGSSLGSIAISGLSS-DQR 266 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~------------~-------------------------~~l~~~~~dg~i~vwd~~~-~~~ 266 (430)
+.+++++|...|+.++.+. + +.+++|++|.++.+|+... .++
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 9999999999999998861 1 2499999999999999764 446
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+..+.+ |..-|..+.|+||++++|+++-|..|++||.++|+.+..+++|-+.|+.++ |+.|.++|++||.|.++++||
T Consensus 360 i~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva-wsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 360 ITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA-WSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred hhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE-eccCccEEEEcCCCceEEEEE
Confidence 777777 888999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
+++.++...+.+|.+.++.+-.++||...
T Consensus 438 V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eeeeeecccCCCCCceEEEEEecCCCcee
Confidence 99999999999999999999999999753
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=277.32 Aligned_cols=290 Identities=14% Similarity=0.159 Sum_probs=257.0
Q ss_pred hhcccCCEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeC
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIG 171 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~ 171 (430)
..|.+...+.+.+.||..+|+.+.|. +. .+++++.|++|++||..++++...+++| +.+..++|+..|++++ ++.|
T Consensus 92 ~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 92 ALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred hhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence 34666677888999999999999994 44 8889999999999999999999999987 5566799999999999 7777
Q ss_pred CeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
-.+.+||.++.... ......+.+..+++.+.+..+++++.|.+|+.|++.++.++.++.+|...|..++.+.+ .+++
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 77999999885432 23334556777888889989999999999999999999999999999999999999954 8999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC---------------CCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC---------------SRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
+++.|.++++|-+.++++...+.. |+-+|.+++|-|. ++++++++.|++|++||+.++.++.++
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 999999999999999988888887 8889999999762 258999999999999999999999999
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
.+|...|.+++ |+|.|+||+++..|+++++||++++++..++..|.
T Consensus 331 ~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~--------------------------------- 376 (406)
T KOG0295|consen 331 VGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE--------------------------------- 376 (406)
T ss_pred ecccceeeeeE-EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc---------------------------------
Confidence 99999999999 99999999999999999999999999999987644
Q ss_pred CCCCCeeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 394 TIRPPITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 394 ~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
.-|++++|+ -.+++||+-|.++++|.-
T Consensus 377 ---hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 ---HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---ceeEEEecCCCCceEEeccccceeeeeec
Confidence 488999994 568999999999999974
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-39 Score=259.40 Aligned_cols=290 Identities=18% Similarity=0.225 Sum_probs=236.3
Q ss_pred EeEEEEeccccceeEEEec-C--CeEEEEeCCCeEEEEecCC-----CeeEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRMK-R--GLILTGVGDKVMRLWSLEG-----YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~--~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
....+|+||++.|+.++.. . +.+++++.|.++.+|++.. |..++.+.+| +.+.-+..++|+++.+ ++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3456899999999999983 3 3999999999999998754 6678889987 4566699999999999 89999
Q ss_pred eEEEEEcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--CCCeEEEEecCC---C
Q 014104 173 RICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSED---Q 245 (430)
Q Consensus 173 ~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~~~~---~ 245 (430)
.+++||+.+++. .+..|...+ ..+++++++..+++|+.|.+|++||.. +.+..++..+ .+.|.|+.|+|+ .
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dV-lsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDV-LSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCce-EEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999863 455555443 345666666779999999999999985 4454455433 789999999986 4
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
+|++++.|++|++||+++.+....+.+ |.+.++.++++|||.+.++|+.||.+.+||++.++.+..+. |...|.+++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~- 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC- 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE-
Confidence 899999999999999999999999988 89999999999999999999999999999999999987765 668999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV- 404 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~- 404 (430)
|+|+...|+.+. +..|+|||++++.++..+.....+. ..+.-.....+++|
T Consensus 241 fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~---------------------------s~~~~~~~clslaws 292 (315)
T KOG0279|consen 241 FSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP---------------------------SSKAGDPICLSLAWS 292 (315)
T ss_pred ecCCceeEeecc-CCceEEEeccchhhhhhcccccccc---------------------------ccccCCcEEEEEEEc
Confidence 999877666664 5569999999999988887533311 00111224456677
Q ss_pred -cCeEEEEeeCCCeEEEEEecC
Q 014104 405 -GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 405 -~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
||..|++|-.|+.|++|.+..
T Consensus 293 ~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 293 ADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCCcEEEeeecCCcEEEEEeec
Confidence 599999999999999999853
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=267.47 Aligned_cols=297 Identities=18% Similarity=0.258 Sum_probs=252.8
Q ss_pred hhhcccCCEeEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe
Q 014104 95 RFALEEGRIDIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI 170 (430)
Q Consensus 95 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~ 170 (430)
+..|...-+..+.+.||.+.|.|+++.+ + +++||+.|++|+|||+.+|++..++.+| ..+.-+++++..-+++ ++.
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 4455556667788999999999999943 3 9999999999999999999999999977 6677899999999999 888
Q ss_pred CCeEEEEEcCCCcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEE
Q 014104 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l 247 (430)
|+.|+.||++..+.+ ....+|...+.|+... -..|++|+.|.++++||+++...+..+.+|..+|..+.+.| +..+
T Consensus 214 dk~VKCwDLe~nkvI-R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVI-RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred CCeeEEEechhhhhH-HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 999999999988743 3444555556666654 34499999999999999999999999999999999999986 5789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++|+.|++|++||++.|+...++.. |...|++++.+|....+|+++.|. |+-|++..+..+..+.+|.+.|+++. ..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~-~n 369 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLS-VN 369 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeee-ec
Confidence 9999999999999999999999886 888999999999999999999887 99999999999999999999999998 65
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-- 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-- 405 (430)
.| .++++|+.+|.+.+||.++|...+....-.+ -||-+ -...|++.+||
T Consensus 370 sD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-----pGSl~-----------------------sEagI~as~fDkt 420 (460)
T KOG0285|consen 370 SD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-----PGSLE-----------------------SEAGIFASCFDKT 420 (460)
T ss_pred cC-ceEEEcCCceEEEEEecCcCccccccccccc-----CCccc-----------------------cccceeEEeeccc
Confidence 54 5788999999999999999987776643211 01111 12478888896
Q ss_pred CeEEEEeeCCCeEEEEEec
Q 014104 406 MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~ 424 (430)
|.+|+||..|.+|++|.-+
T Consensus 421 g~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKED 439 (460)
T ss_pred CceEEeccCCcceEEEecc
Confidence 8899999999999999754
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=281.19 Aligned_cols=240 Identities=15% Similarity=0.235 Sum_probs=219.7
Q ss_pred eEEEEeccccceeEEEe-cC--C-eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.+.+|.||.+.|.++.| |. + .+|||+.||++++|++++..++..+.+|. .+..++|+|+|++|. ++.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 68899999999999999 43 3 99999999999999999999999999884 456699999999999 9999999999
Q ss_pred EcCCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
|++++..++ .+|... +..+++.+++..+++|+.|..-+|||+++|.++-.+.+|..+|.+|+|+|+ ..+++|+.|+
T Consensus 289 D~~tk~ElL~QEGHs~~-v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKG-VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ccccchhhHhhcccccc-cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 999988543 333333 455677778888999999999999999999999999999999999999987 6899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+++|||++..+.+.++.. |.+-|+.|+|+| .|.+|++++.|++++||..++..+++.+.+|.+.|.++. ++++++++
T Consensus 368 t~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i 445 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAI 445 (459)
T ss_pred cEEEeeecccccceeccc-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccCCceE
Confidence 999999999999999998 899999999998 788999999999999999999999999999999999999 99999999
Q ss_pred EEEcCCCeEEEEE
Q 014104 334 VVGGIDGVLRVLD 346 (430)
Q Consensus 334 ~s~~~dg~i~vwd 346 (430)
++++.|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-38 Score=271.45 Aligned_cols=283 Identities=16% Similarity=0.224 Sum_probs=247.6
Q ss_pred EeEEEEeccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
..+.++.||+..|+++.| + .+ +|++++.|+.|+||++.. ++++++|.+| .++..++|+.+|..++ ++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 357889999999999998 4 45 999999999999999876 8999999998 5567799999999999 999999999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
||+++++.+...+.+....++.+.++++. +++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++ ..+++.++|+
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 99999999988888888888888888744 999999999999999999999999999999999999975 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---ceeeeeecCC--CceEEEEEeeCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM---KSLWETRISP--NVVYSLQHLQND 329 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~--~~v~~l~~~s~~ 329 (430)
++++|+.+.+..+........-...++..+|+++++++-+.|..|.+|.+... .....+++|. +.-..+. ||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~-fSpD 443 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD-FSPD 443 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE-EcCC
Confidence 99999999887776655434446788999999999999999999999997642 3334677886 4455666 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---C
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---M 406 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~ 406 (430)
|.+|++|+.||.+.+||.++.+.+..++.|. .++..+.|+ .
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~------------------------------------~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD------------------------------------QPCIGVDWHPVEP 487 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCC------------------------------------cceEEEEecCCCc
Confidence 9999999999999999999999998887654 488888884 5
Q ss_pred eEEEEeeCCCeEEEEE
Q 014104 407 KKVVTTHNSKYIRLWK 422 (430)
Q Consensus 407 ~~l~t~~~Dg~v~vw~ 422 (430)
..+||+|.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6799999999999996
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-35 Score=254.74 Aligned_cols=315 Identities=15% Similarity=0.131 Sum_probs=253.6
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---cC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.++..|..-|+|+.| ||| +++|++.||+|.+||-.+++.+..+. .| +.+..++|+||+..++ ++.|.++++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 466789999999999 677 99999999999999999999999998 34 6678899999999999 89999999999
Q ss_pred cCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 179 RNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+.+.+.+....-+.. ...+.+.+....|++.+.+|+|.+++...+..++.+.+|...|+++..+++ .+|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 998874332222211 223444455777999999999999999999999999999999999999976 89999999999
Q ss_pred EEEEeCCCCceeEE-----------EecCC--------------------------------------------------
Q 014104 256 IAISGLSSDQRVAT-----------LRSTD-------------------------------------------------- 274 (430)
Q Consensus 256 i~vwd~~~~~~~~~-----------~~~~~-------------------------------------------------- 274 (430)
|.-||..++..-+. +....
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 99999876532111 10000
Q ss_pred -------------------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeE
Q 014104 275 -------------------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 275 -------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
.-...+++++|++..+++|+.|+.|++|.+..+.. ...+..|.++|+.++ +|||+.+|
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~yl 502 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGAYL 502 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCcEE
Confidence 01356889999999999999999999999986543 335667999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCce----------EEEeecccccCCcccccCCCCCCCCeeEE
Q 014104 334 VVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGV----------IERNEGRRLSAGCCIDRIPKTIRPPITCL 402 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~----------v~~~~~~~~~~~~~~~~~~~~h~~~v~~v 402 (430)
++|...+.+.+||+.+.+. ...+..|...+..++++++.. +.+|++ ........+..+|...|+.+
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv---~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV---KKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc---cChhhheEeccccccCceeE
Confidence 9999999999999998765 455666777776666666554 444443 33344456677899889999
Q ss_pred EE-cCeEEEEeeCCCeEEEEEec
Q 014104 403 AV-GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 403 ~~-~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.| |...+++.|.|..||+|.+.
T Consensus 580 ~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEecCceEEeccCcceeEEeccc
Confidence 99 89999999999999999875
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=262.17 Aligned_cols=279 Identities=23% Similarity=0.309 Sum_probs=238.0
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~- 183 (430)
..-..+|..|.| ++| .|++|+..|.+.+|+..+-........| ..+..+.|++++.+++ +..+|.|++|+.+-..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 334567888999 777 9999999999999997543222222333 5678899999999999 8889999999987654
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
..+..+....+..+++++.+..+++++.||+|+|||....+....+.+|.-.|.+++|+|. .++++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 3455555555666777777777999999999999999999888899999999999999987 799999999999999999
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCe
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGV 341 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~ 341 (430)
+++++.++.. |...|..+.|+|++++|++++.|..+++||+++.+.+.++++|...|+++. ++|- ..+|.+|+.||.
T Consensus 253 Sg~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~-WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 253 SGSCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT-WHPLNESLFTSGGSDGS 330 (464)
T ss_pred Ccchhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec-cccccccceeeccCCCc
Confidence 9999999987 889999999999999999999999999999999999999999999999999 7774 458889999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIR 419 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~ 419 (430)
|..|.+...+++.. ++.+|...|++++++ |..|+||+.|.+++
T Consensus 331 vvh~~v~~~~p~~~-----------------------------------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGE-----------------------------------IPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred eEEEeccccccccC-----------------------------------CCcccccceeeeeccccceeEeecCCCccee
Confidence 99999874333333 335688899999997 89999999999999
Q ss_pred EEEec
Q 014104 420 LWKFN 424 (430)
Q Consensus 420 vw~~~ 424 (430)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99643
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-36 Score=239.99 Aligned_cols=243 Identities=22% Similarity=0.334 Sum_probs=208.1
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+..++.|.||...|..+.. +++ +.++++.|+++++||+.+++....|.+| ..+..++|++|++.++ ++.|.+|.+|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 3468899999999999988 566 9999999999999999999999999988 4567799999999999 9999999999
Q ss_pred EcCCCcccccCCC--CceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 178 RRNGLRSVFPSRE--GTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 178 d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
|+.+......... ..-+..++|.|. .+.|++++.|++|++||+++.+....+.+|++.++.++++|+ .+.++|+.
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 9988764333322 344556666766 556999999999999999999999999999999999999987 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC---------CCceEEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS---------PNVVYSL 323 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~v~~l 323 (430)
||.+.+||++.++.++.+. +...|.+++|+|+...|+.+... .|+|||+.++..+.+++.. .....++
T Consensus 213 dg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 9999999999999999988 77899999999998777766544 4999999998877665421 2234566
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+ |+++|..|++|-.|+.|++|.+.
T Consensus 290 a-ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 A-WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred E-EcCCCcEEEeeecCCcEEEEEee
Confidence 6 99999999999999999999875
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.4e-37 Score=279.05 Aligned_cols=276 Identities=16% Similarity=0.250 Sum_probs=227.4
Q ss_pred CEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
....+++......++|..|+|+ .+|.|-.|..|++|.+...+ ++.++......-+. ..+.|-.+.+.|.
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d--------~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNID--------TESADVDVDMLDD 438 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhcccc--------ccccchhhhhccc
Confidence 3467888888889999999655 89999999999999987642 22332211100000 0122222333443
Q ss_pred CCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 180 NGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+... ..+.+|.+.+ ....+++....|+++++|++|++|.+.+..++-.+++|..||+.+.|+|. -+|++|+.|++.
T Consensus 439 ~~~~~~~~L~GH~GPV-yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPV-YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred cCCceeEEeecCCCce-eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 3322 2355666654 44667777778999999999999999999999999999999999999985 799999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
++|.....++++.+.+ |...|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|.+++ |||+|++|++|
T Consensus 518 rLWs~d~~~PlRifag-hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAG-HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA-FSPCGRYLASG 595 (707)
T ss_pred eeeecccCCchhhhcc-cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE-EcCCCceEeec
Confidence 9999999999999988 888999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
+.||.|++||+.+++++..+.+|. +.|.++.| +|..||+||.
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht------------------------------------~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHT------------------------------------GTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhccc------------------------------------CceeEEEEecCCCEEEecCC
Confidence 999999999999999999987764 47777777 5777999999
Q ss_pred CCeEEEEEecC
Q 014104 415 SKYIRLWKFNY 425 (430)
Q Consensus 415 Dg~v~vw~~~~ 425 (430)
|++|++||+..
T Consensus 640 DnsV~lWD~~~ 650 (707)
T KOG0263|consen 640 DNSVRLWDLTK 650 (707)
T ss_pred CCeEEEEEchh
Confidence 99999999864
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-35 Score=254.82 Aligned_cols=283 Identities=17% Similarity=0.323 Sum_probs=243.7
Q ss_pred EEEeccccceeEEEec---CCeEEEEeCCCeEEEEecCC--Ce--eE-----------EeeecCCceeEEEEecCCCEEE
Q 014104 106 DQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEG--YK--CV-----------EEYSLPNAASLVDFDFDESKIV 167 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~--~~--~~-----------~~~~~~~~~~~~~~~~~~~~l~ 167 (430)
+.+. |..+|.+++|+ ++.+++|+.|-+.++|++.. .. .. +.......+..++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 99999999994 34999999999999999864 11 10 1122235678899999999999
Q ss_pred -EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCC
Q 014104 168 -GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ 245 (430)
Q Consensus 168 -~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 245 (430)
+..+|.+++|+..+... .+..|.+.+ ..+-|.-.+.+|++++.|+++.+||..+++..+.+..|..+-..+.|-.+.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI-~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPI-FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCce-EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 99999999999998874 455555554 334555556669999999999999999999999999998887889998778
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
.|++++.|+.|+|+-+....++.++.+ |.++|.++.|+|.|.+|++++.|++++||+.........+.+|...|+.+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~- 408 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK- 408 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe-
Confidence 899999999999999999999999998 888999999999999999999999999999999999999999999999998
Q ss_pred eeCCCC---------eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 326 LQNDTS---------TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~---------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
|+|.|. .+++++.|++|++||+..|.++.++.. |+
T Consensus 409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k------------------------------------H~ 452 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK------------------------------------HQ 452 (524)
T ss_pred ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc------------------------------------CC
Confidence 888754 789999999999999999999999865 55
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|.+++| +|+++++|+.||.|.+|+.++++-
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 58999999 589999999999999999998764
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-35 Score=252.35 Aligned_cols=270 Identities=16% Similarity=0.255 Sum_probs=234.2
Q ss_pred ccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--c
Q 014104 112 SVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--V 185 (430)
Q Consensus 112 ~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~ 185 (430)
+..|++++|+ +| .||+|+.||.+++|+... ..+.++..| +++..+.|+.+|.+|+ ++.|+++.+||..++.. .
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4679999995 55 999999999999999664 666677665 6677799999999999 88999999999987763 3
Q ss_pred ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 186 FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
+..+.... +.+...+.. +++.+.||.|+|+.+....++.++.+|.++|.++.|+|. .+|++++.|+++++|+...
T Consensus 314 f~~~s~~~---lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 314 FEFHSAPA---LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeccCCc---cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 44444331 333333333 999999999999999888999999999999999999975 8999999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCS---------RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
......+.. |...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|++++ |+|+|++++
T Consensus 391 ~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylA 468 (524)
T KOG0273|consen 391 SNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLA 468 (524)
T ss_pred Ccchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEE
Confidence 999999987 88899999999976 4788999999999999999999999999999999999 999999999
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT 412 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~ 412 (430)
+|+.||.|.+|++++++.++.+... +.|..+.| +|.+|..+
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~-------------------------------------~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGT-------------------------------------GGIFELCWNAAGDKLGAC 511 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCC-------------------------------------CeEEEEEEcCCCCEEEEE
Confidence 9999999999999999999988642 35788888 48889999
Q ss_pred eCCCeEEEEEec
Q 014104 413 HNSKYIRLWKFN 424 (430)
Q Consensus 413 ~~Dg~v~vw~~~ 424 (430)
-.||.+++-|+.
T Consensus 512 ~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 ASDGSVCVLDLR 523 (524)
T ss_pred ecCCCceEEEec
Confidence 999999998874
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-34 Score=254.71 Aligned_cols=279 Identities=25% Similarity=0.364 Sum_probs=233.6
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
++++.+|.++|.+++++ ++ ++++++.||.|++|++.+++....+..+.. +..+.+.++++.++ ++.++.+.+|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999994 44 999999999999999998887777776644 44799999998887 7779999999999
Q ss_pred CCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 181 GLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
+++.. +..+.. ....+.+.+.+..+++++.+|.|.+||+.+++....+..|...+.+++++|+ .++++++.|+.|+
T Consensus 82 ~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 86433 222222 2233444444445777777999999999989998889889999999999985 6777777799999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++.+..+.. +...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.++. ++|++.++++++
T Consensus 161 i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~ 238 (289)
T cd00200 161 LWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLASGS 238 (289)
T ss_pred EEEccccccceeEec-CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE-EcCCCcEEEEEc
Confidence 999999888888886 777999999999999999999999999999999999988888988999998 999988888888
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~D 415 (430)
.||.|++||+.+++.+..+.. |...|.+++|+ +++|++++.|
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~------------------------------------~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSG------------------------------------HTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred CCCcEEEEEcCCceeEEEccc------------------------------------cCCcEEEEEECCCCCEEEEecCC
Confidence 899999999998887777654 34578888884 5899999999
Q ss_pred CeEEEEE
Q 014104 416 KYIRLWK 422 (430)
Q Consensus 416 g~v~vw~ 422 (430)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.8e-35 Score=236.80 Aligned_cols=281 Identities=15% Similarity=0.215 Sum_probs=230.9
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.++..+.||.+.|+.+.| |+| +||||+.|..|.+|+... .+....+++| +++.-+.+..|++.++ ++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 356678999999999999 677 999999999999999653 4455666776 5566699999999999 8899999999
Q ss_pred EcCCCcccccCCC-CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVFPSRE-GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
|.++++.+..... ...+..++..-.++. +.+++.||++++||+++..+++++. .+..++++.|... ..+.+|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999986543221 222333333334444 7889999999999999999988886 4568999999854 7899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCCC----ceEEEEEe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISPN----VVYSLQHL 326 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~----~v~~l~~~ 326 (430)
.|++||++.+...+.+.+ |..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|.. .....+ |
T Consensus 197 ~ikvWd~r~~d~~~~lsG-h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-w 274 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSG-HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-W 274 (338)
T ss_pred ceeeeccccCcceEEeec-ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-c
Confidence 999999999999999998 8999999999999999999999999999999863 44666666541 233444 8
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG- 405 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~- 405 (430)
+|++..+.+|+.|..+++||..+...+..+++ |.+.|++++|.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpG------------------------------------h~gsvn~~~Fhp 318 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPG------------------------------------HYGSVNEVDFHP 318 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCC------------------------------------cceeEEEeeecC
Confidence 99999999999999999999998888888876 44589999995
Q ss_pred -CeEEEEeeCCCeEEEEE
Q 014104 406 -MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 406 -~~~l~t~~~Dg~v~vw~ 422 (430)
...|.+++.|.+|.+=+
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 67899999999987633
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=248.12 Aligned_cols=286 Identities=12% Similarity=0.113 Sum_probs=233.1
Q ss_pred CEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
....+.|..|++.|.-+.|+ +| |||||+.|.+..+|++... +..+++.+| .++..+.|+||.++|+ ++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 34566789999999999994 56 9999999999999987643 345666666 6677799999999999 7778889
Q ss_pred EEEEcCCCcccccCC--CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecCC-CEEEEE
Q 014104 175 CIWRRNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISG 250 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~ 250 (430)
.+||+.++.....-. .+.....++|.+++..+++|+.|+++..||+. |+.+...++.. ..|.+++..++ .++++.
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEE
Confidence 999999988543222 24556678889999999999999999999984 55555554433 46899999965 888888
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE-Eee-C
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ-HLQ-N 328 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~-~~s-~ 328 (430)
+.|..|++++.++......+. ...+|+++..+.+++++++.-.+..+.+||++..+.+..+.+|...-+-+. +|. .
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred ecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 999999999998766665554 455899999999999999999999999999999889999999974432221 133 3
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--- 405 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--- 405 (430)
+..++++||+|+.|+||+..+|+++..+.+ |...|+||+++
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsG------------------------------------Hs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSG------------------------------------HSKTVNCVSWNPAD 494 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecC------------------------------------CcceeeEEecCCCC
Confidence 457999999999999999999999999976 44589999994
Q ss_pred CeEEEEeeCCCeEEEEEecCC
Q 014104 406 MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...+|+||+||+||||.....
T Consensus 495 p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HHHhhccCCCCeEEEecCCcc
Confidence 678999999999999987643
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=225.37 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=222.6
Q ss_pred EeEEEEeccccceeEEEecCC---eEEEEeCCCeEEEEecCCC---eeEEeeec--CCceeEEEEecCCCEEEEEeCCeE
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGY---KCVEEYSL--PNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
..++.++||.+.+..++++++ .||||+.|+.|++|+...+ .+...+.. ...+..++|+|.|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~--------- 75 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY--------- 75 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE---------
Confidence 467789999999999999554 7999999999999998853 33333322 244556667666665
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEecC-CCEEEEEe
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSE-DQLIISGS 251 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~-~~~l~~~~ 251 (430)
|++|+.|.++.||.-..+ +++.++++|...|.+++|++ +++||+++
T Consensus 76 -------------------------------La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 76 -------------------------------LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred -------------------------------EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 788888888888875544 68899999999999999996 59999999
Q ss_pred CCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---CceeeeeecCCCceEEEEE
Q 014104 252 SLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---MKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~ 325 (430)
.|++|-+|.+..+ .+...++. |...|..+.|+|...+|++++.|.+|++|+-.. -++.+++.+|...|++++
T Consensus 125 RDKSVWiWe~deddEfec~aVL~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~- 202 (312)
T KOG0645|consen 125 RDKSVWIWEIDEDDEFECIAVLQE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA- 202 (312)
T ss_pred CCCeEEEEEecCCCcEEEEeeecc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-
Confidence 9999999998744 34566666 888999999999999999999999999998762 467889999999999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCC------ceEEEEEeccCcceeeeccCCceEEEeecccccCCccc---ccCCCCCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTG------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI---DRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~---~~~~~~h~ 396 (430)
|++.|..|++++.|++|+||-..+. ..++.++-. .-.++++..|+.+.++....-+.+..+ ......|.
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe 280 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE 280 (312)
T ss_pred ecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence 9999999999999999999984422 234444443 335778888998887766654444333 33456799
Q ss_pred CCeeEEEEc---CeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAVG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|++|+++ .++|++||+||.|++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999996 5789999999999999975
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=231.81 Aligned_cols=246 Identities=15% Similarity=0.193 Sum_probs=215.0
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
+++++| +.+..+.|++|.+.++ ++.||.+.|||.-+...+ .......-+..++++|.+..+++|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 667776 5678899999999999 899999999998765432 2222223334567778888899999999999999986
Q ss_pred C------eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 014104 223 R------KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTT 295 (430)
Q Consensus 223 ~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 295 (430)
. +..+.+.+|++-+.|+.|.++..|++++.|.++.+||+++++.+..|.+ |.+.|.++.++| +++.+++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEeccc
Confidence 5 3456789999999999999889999999999999999999999999998 999999999999 9999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
|+..++||++.+.+++.|.+|...|+++. |.|+|.-+++|+.|++.++||++..+.+..+.....
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~-------------- 272 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI-------------- 272 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEE-EccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc--------------
Confidence 99999999999999999999999999999 889999999999999999999999988888763221
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..+|++++| +|++|++|..|.++.|||.-.++
T Consensus 273 --------------------~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 273 --------------------ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred --------------------cCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 258999999 59999999999999999986655
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=253.80 Aligned_cols=318 Identities=18% Similarity=0.232 Sum_probs=257.7
Q ss_pred EeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-E-EeCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-G-LIGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~ 182 (430)
|......|+|.+|..+ .|++|-..|...+|++..-.+++.+... ..+..++|+..|+.|+ + +.-|++-||+..+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 3444578999999766 8999999999999999999999998875 6677899999999999 4 34489999999988
Q ss_pred cccccCCCCcee--eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTFM--KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vw 259 (430)
..+++.. +|.. ..+..++++..+++|+.||.|+|||..++-|+.++..|+..|+.+.|+ .++.+++.+-||+|+.|
T Consensus 341 sYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 7665433 3333 345555667789999999999999999999999999999999999999 46899999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|+...+..++|..+...+..|++.+|.|..+++|+.|. .|.+|++++|+.+..+.+|.++|.+++ |+|++..|+++|.
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSW 498 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccc
Confidence 99999999999987777889999999999999998876 599999999999999999999999999 9999999999999
Q ss_pred CCeEEEEEcCCCc-e---------EEEEEeccCcceeeeccCCceEEEeecccccCC------------cc-cccCC---
Q 014104 339 DGVLRVLDQNTGE-V---------LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG------------CC-IDRIP--- 392 (430)
Q Consensus 339 dg~i~vwd~~~~~-~---------~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~------------~~-~~~~~--- 392 (430)
|.+|++||+-... . +-.+..++++..++..+-||++.+|+...-..- .. ...+.
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9999999986431 2 223334555666777777777776655432211 00 01111
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.......+.+.+ ||..+++||....|++|++.++-
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 122356777766 89999999999999999998763
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=236.10 Aligned_cols=318 Identities=14% Similarity=0.186 Sum_probs=232.8
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
...+.+|..|++.|.+++. |+. +++||+.|....+|++.+++....+.+| +.+..+.|+.+|.+|+ +..+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3457789999999999999 444 9999999999999999999988888876 6788899999999999 8899999999
Q ss_pred EcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 178 RRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 178 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
...++....... ......-++|.+....+++|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+ +.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 999987544432 3333344666666666999999999999999988888999999999999999975 89999999999
Q ss_pred EEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEEEEE--
Q 014104 256 IAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYSLQH-- 325 (430)
Q Consensus 256 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~l~~-- 325 (430)
|++||+.+++++.++.+.......++.++..+..++.|+.++.+++-+..+++.+.... .+...+.++.+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999999999988875444455666666666666666666666666666665554443 12222222220
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEE---------EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC---------VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
++..=++.|+|+.||+|.|||+...++...+ .... ..++++++.+|.++.|+.+.-. +.....+|+
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~ 368 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ----LKFTYTGHQ 368 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc----eEEEEecCc
Confidence 3333345566666666666666544332222 2222 2355566666666655544321 122225677
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|.++++ +.++++|+|.|++.+|+++.
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 89999888 68899999999999999875
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-35 Score=262.92 Aligned_cols=320 Identities=16% Similarity=0.247 Sum_probs=243.1
Q ss_pred CCEeEEEEeccccceeEEEecCC----eEEEEeCCCeEEEEecCCCee-EEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 101 GRIDIDQWKAHSVGVDQCRMKRG----LILTGVGDKVMRLWSLEGYKC-VEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
+.+..+.|+||.+.|.++.|.+. .|++|..|+++++||+.+... +.....| ..+..++|++|+..++ ++.|..
T Consensus 136 ~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 136 NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence 44578899999999999999432 789999999999999996544 6666655 6678899999998888 899999
Q ss_pred EEEEEcCCCcccccCCCCceee----------------------------------------------------------
Q 014104 174 ICIWRRNGLRSVFPSREGTFMK---------------------------------------------------------- 195 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~---------------------------------------------------------- 195 (430)
+.+||+...+.....+......
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 9999986543221111111111
Q ss_pred ------------------------------eeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE-e
Q 014104 196 ------------------------------GLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS-L 241 (430)
Q Consensus 196 ------------------------------~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~-~ 241 (430)
+..+.+.++. +++++..+.+++|+..+..+. .+.+|+..|.+++ +
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW 374 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec
Confidence 1122222221 455555555555555444433 5678999999998 4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCc----eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-----e-
Q 014104 242 SEDQLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS-----L- 310 (430)
Q Consensus 242 ~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~- 310 (430)
+.+.++++|+.|.++++|.++++. ++....+ |...|.+++++..+ .+|++++.|+++++|++...+. +
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 456799999999999999774433 3444555 88899999997655 5889999999999999976221 1
Q ss_pred ---eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEEEe
Q 014104 311 ---WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIERN 377 (430)
Q Consensus 311 ---~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~~~ 377 (430)
.....|...|++++ ++|+.++++|||.|.+.+||+++.+..+.++.+|..++ .+++.|.|.++++|
T Consensus 454 ~~~~t~~aHdKdIN~Va-ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVA-IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hhhHHHHhhcccccceE-ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 13457889999999 99999999999999999999999999999999999877 45667778888777
Q ss_pred ecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
....++ ++.++ .+|+..|..++| +|..|+|++.||.|++|++++++
T Consensus 533 ~is~fS---ClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 533 SISTFS---CLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred Eeccce---eeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 665544 34444 689999999999 79999999999999999999875
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-34 Score=223.43 Aligned_cols=255 Identities=18% Similarity=0.189 Sum_probs=214.4
Q ss_pred CEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.++++.+..|+++|.++.|+ +| |.++++.|++|++|+...+.+++++.+|+. +.-.+.+.|+..++ ++.|..+.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34677889999999999995 45 999999999999999999999999999854 55588999999999 8899999999
Q ss_pred EcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEecCCCEEEEEeCC
Q 014104 178 RRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSEDQLIISGSSL 253 (430)
Q Consensus 178 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d 253 (430)
|+++++. .+..|.+.+ ..+.+......+++|+.|.++++||.++. ++++.+....+.|.++..+ +..+++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqV-NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQV-NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeeccccccee-eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccC
Confidence 9999984 345555443 22333333444999999999999998865 6888998888999999995 4578999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE-EeeCCCCe
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ-HLQNDTST 332 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~-~~s~~~~~ 332 (430)
|+++.||++.|+...... ..+|+++.|+++++...+++-|+++++.|-.+|+.+..+++|.+.-+.+. .++.....
T Consensus 165 GtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 999999999998876664 45899999999999999999999999999999999999999987655554 24556678
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++|++||.|++||+.+...+..+..+..
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~ 270 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVST 270 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCc
Confidence 99999999999999999988888875443
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.6e-35 Score=267.40 Aligned_cols=208 Identities=24% Similarity=0.360 Sum_probs=189.7
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIW 177 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vw 177 (430)
.....+++.||.++|..+.| |+. +|+++|.|++||+|.+.+..++-.+++|.. +..+.|+|.|-
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy------------- 506 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY------------- 506 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-------------
Confidence 33456779999999999999 555 999999999999999999999988888743 33455555443
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
++++++.|++.++|.....++++.+.+|.+.|.|+.|+|+ .++++||.|.+|
T Consensus 507 ---------------------------YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 507 ---------------------------YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred ---------------------------EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceE
Confidence 3899999999999999999999999999999999999998 899999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
++||+.+|..++.|.+ |.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+.+|.+.|+++. |+.+|..||+|
T Consensus 560 RlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-FS~dg~vLasg 637 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-FSRDGNVLASG 637 (707)
T ss_pred EEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-EecCCCEEEec
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCC
Q 014104 337 GIDGVLRVLDQNTG 350 (430)
Q Consensus 337 ~~dg~i~vwd~~~~ 350 (430)
+.|++|++||+..-
T Consensus 638 g~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 638 GADNSVRLWDLTKV 651 (707)
T ss_pred CCCCeEEEEEchhh
Confidence 99999999998743
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-35 Score=232.71 Aligned_cols=282 Identities=16% Similarity=0.204 Sum_probs=244.3
Q ss_pred EEeccccceeEEEe----cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 107 QWKAHSVGVDQCRM----KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 107 ~l~~h~~~v~~~~~----~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
+..||+.+|..++| |+| +|++++.|+.-.+-+-++|..+.+|.+|.+ +...+++.+....+ ++.|-+.++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 57899999999999 467 899999999999999999999999999844 45566666665666 788999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~ 257 (430)
-++..+......+++..+++..+...|++|+.+..++|||++..+ +...+.+|.+.|..+.|. .++.|++.+.|++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 999888877888898999999999999999999999999998764 567888999999999998 568899999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||.+++..++++. ...+|+++.++++|++|.++ ..+.|.+||..+..+++.++.. ..|.+.. ++|+...+++|+
T Consensus 169 LWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SAS-L~P~k~~fVaGg 243 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESAS-LHPKKEFFVAGG 243 (334)
T ss_pred EEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-ccccccc-ccCCCceEEecC
Confidence 99999999999998 66789999999999987765 4567999999999888887654 5677877 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D 415 (430)
.|..++.||..+|+.+..+. ++|-++|-||.| ||...++||+|
T Consensus 244 ed~~~~kfDy~TgeEi~~~n-----------------------------------kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYN-----------------------------------KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cceEEEEEeccCCceeeecc-----------------------------------cCCCCceEEEEECCCCceeeccCCC
Confidence 99999999999999887751 345568888888 67889999999
Q ss_pred CeEEEEEecCCCc
Q 014104 416 KYIRLWKFNYSDK 428 (430)
Q Consensus 416 g~v~vw~~~~~~~ 428 (430)
|+||+|+...++.
T Consensus 289 GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 289 GTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEecCCCc
Confidence 9999999887654
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=259.11 Aligned_cols=283 Identities=16% Similarity=0.190 Sum_probs=232.2
Q ss_pred EeEEEEeccccceeEEEe--cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
..++.+-|..+.|..++| ++. +++.+++.+.+|+|+..+..+. .+.+| +.+.++....+|..|+ ++.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 355677899999999999 433 9999999999999999887766 55555 4455566556777788 8999999999
Q ss_pred EcCCCcc---cccCCCCceeee--eEEEEcCC-ceEEEecCCeEEEEECCCCee-----eE----EeecCCCCeEEEEec
Q 014104 178 RRNGLRS---VFPSREGTFMKG--LCMRYFDP-EAVVGCEDGTARVFDMYSRKC-----SQ----IIRMHCAPVTSLSLS 242 (430)
Q Consensus 178 d~~~~~~---~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-----~~----~~~~~~~~i~~~~~~ 242 (430)
.++.+.. ......+|...+ ++++..+. .+++++.|+++++|++...+. +. +...|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 9955432 122222333222 33333333 399999999999999875221 11 234799999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
|+ .++++||.|.+.++|++...+...++.+ |..+|.++.|+|..+.+++++.|.+|+||.+.+..++.++.+|...|.
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 86 8999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
... |-.+|+.|++++.||.|++|++.+++|+.++..|.+ .|++
T Consensus 552 ra~-F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D------------------------------------rvWa 594 (775)
T KOG0319|consen 552 RAS-FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND------------------------------------RVWA 594 (775)
T ss_pred eee-eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc------------------------------------eeEE
Confidence 999 777899999999999999999999999999987555 7888
Q ss_pred EEE--cCeEEEEeeCCCeEEEEEec
Q 014104 402 LAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 402 v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++. ....++||+.||.|.+|.=.
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EeecCccceeEecCCCeEEEEeecC
Confidence 777 35679999999999999643
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=249.79 Aligned_cols=320 Identities=16% Similarity=0.197 Sum_probs=248.8
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeE--EeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCV--EEYSLPN-AASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+.+++.||.+.|.++.|+++ +|++|+.|.++++|+++..+-. ..+.+|. .+...-|..+...++ .+.||.+.+|
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 45678899999999999655 9999999999999999876664 4444553 344456667777777 8999999999
Q ss_pred EcCCC-----------------------cc-----cccCC-----CCceeeeeEEEEcC--CceEEEecCCeEEEEECCC
Q 014104 178 RRNGL-----------------------RS-----VFPSR-----EGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 178 d~~~~-----------------------~~-----~~~~~-----~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~ 222 (430)
..... +. .+... ......+.|..+.. ..+++|-..|...+|++..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 87611 00 00000 00012233333322 2389999999999999999
Q ss_pred CeeeEEeecCCCCeEEEEec-CCCEEEEEeCC-CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL-GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
..+++.+.....+|..+.|+ .+++++.|+.. |.+.||+..+...+.+..+ |...+++++++|||+++++|+.||+|+
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEeccCCCcEE
Confidence 99999998888899999998 56888888754 8999999999888888887 888999999999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCc-ceeeeccCCceEE----
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS-ASSSSNKVSGVIE---- 375 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~s~d~~v~---- 375 (430)
|||...+-++.++..|.+.|+.+. |+..|+.+++.+.||+|+.||+...+..+++...... ...++..+.|.+.
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~-f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQ-FTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEE-EEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 999999999999999999999999 9999999999999999999999998888888653321 1222222223321
Q ss_pred ----EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 376 ----RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 376 ----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..-+|.+.+++.+. +..+|.++|.+++| ++..|+|||.|.+||+|++-..
T Consensus 455 ~d~F~IfvWS~qTGqllD-iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLD-ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cceEEEEEEEeecCeeee-hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 12234444444443 44889999999888 5899999999999999998543
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.1e-36 Score=247.80 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=209.2
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.++.|.||++.|.|+.|.+..+++|+.|.+|+|||.+++++++++-+| ...++.+-+.+.+++ ++.|.++.+||+...
T Consensus 229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihH-ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH-CEAVLHLRFSNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhh-cceeEEEEEeCCEEEEecCCceeEEEeccCc
Confidence 456789999999999999999999999999999999999999998876 344555566677888 889999999999877
Q ss_pred cc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 183 RS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 183 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
.. ......+|...+..+.++++++++++.|.+|++|++.++++++++.+|...|-|+.+ .+.++++|+.|.+|++||
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEe
Confidence 52 223334555556777788888999999999999999999999999999999999998 678999999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeecCCCceEEEEEeeCCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---------SLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
+..|.+++.+++ |+.-|.++.| +.+.+++|+.||+|++||+..+. ++..+..|.+.|..+. | |..
T Consensus 387 i~~G~cLRvLeG-HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ-F--D~f 460 (499)
T KOG0281|consen 387 IECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ-F--DEF 460 (499)
T ss_pred ccccHHHHHHhc-hHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe-e--cce
Confidence 999999999998 8889999999 66889999999999999997643 3455667889999998 6 667
Q ss_pred eEEEEcCCCeEEEEEcCCCceE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.+++++.|.+|.|||..++.+-
T Consensus 461 qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEeccCCCeEEEEEcCCCCcc
Confidence 8999999999999999877554
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-32 Score=240.18 Aligned_cols=246 Identities=19% Similarity=0.299 Sum_probs=199.7
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEE--eeec-CCceeEEEEecCCCEEEEEeC-----Ce
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSL-PNAASLVDFDFDESKIVGLIG-----TR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~-----~~ 173 (430)
.+..+..|..+++-..| |.| |+++|...|+|||||....+.+. +++. .+.+.-++|++++++|++..+ |.
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 35677899999999999 566 99999999999999987644332 3332 356777999999999995554 34
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+.+||.-+..--+..|... ...+.+.+..|. +++|++|++|.+|+-..-+.-.++..|...|.++.|+|+ +.+++++
T Consensus 131 ~F~~DSG~SvGei~GhSr~-ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRR-INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEEecCCCccceeecccee-EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 6677765543334444333 334555566666 999999999999997666777788899999999999987 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--------------------
Q 014104 252 SLGSIAISGLSSDQRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-------------------- 309 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------- 309 (430)
.||++.+||-.+++.+..+.. +|.+.|.+++|+||+..+++++.|.+++|||+.+.++
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 999999999999999999872 3889999999999999999999999999999976532
Q ss_pred -----------------------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 310 -----------------------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 310 -----------------------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
+..+.+|...|+++. .+|++++|++|+.||.|.-||..+|.
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt-v~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT-VSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEE-EcCCCCEEEeeccCceEEEEecCCcc
Confidence 234567888999999 99999999999999999999998654
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.9e-33 Score=235.91 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=224.0
Q ss_pred ccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEE-ecCCC--EEE-EEeCCeEEEEEcCCCcc
Q 014104 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDF-DFDES--KIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 110 ~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~l~-~~~~~~i~vwd~~~~~~ 184 (430)
-|.+.|.++....+.++||+.||.+++||.. |+..+.+.+|.+ +..+++ .++.. .++ ++.|.++++|..+.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 4888898888887799999999999999965 688888888754 443444 33333 245 99999999999987764
Q ss_pred cc---cCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECC-------------------------CCeeeEEeecCCC
Q 014104 185 VF---PSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMY-------------------------SRKCSQIIRMHCA 234 (430)
Q Consensus 185 ~~---~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~-------------------------~~~~~~~~~~~~~ 234 (430)
.. ....+|...+-+ ....+..+++|+.|.++.+|+.. ++.++.++.+|..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 22 222244333344 44566669999999999999932 1235567889999
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---eee
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---SLW 311 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~ 311 (430)
+|.++.|++...+++++.|.+|+.||+.++..+.++.+ ...+.++.++|..++|++|+.|..+++||.+++. ...
T Consensus 262 ~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 262 PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred ceeeEEEcCCCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 99999999888999999999999999999999988884 5689999999999999999999999999999853 346
Q ss_pred eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 312 ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
++.+|.+.|.++. ++|... .|++|+.|+++++||+++.+ ++..+..|
T Consensus 340 s~~gH~nwVssvk-wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h------------------------------ 388 (423)
T KOG0313|consen 340 SLIGHKNWVSSVK-WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH------------------------------ 388 (423)
T ss_pred eeecchhhhhhee-cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC------------------------------
Confidence 7899999999999 777655 77899999999999999877 88888764
Q ss_pred cCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEec
Q 014104 390 RIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+.|.++.|+ +..++|||.|.+|+|+.-.
T Consensus 389 ------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 ------NDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------CceEEEEeccCCceEEeccCcceEEEeccc
Confidence 4589999995 7799999999999999754
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-32 Score=218.98 Aligned_cols=259 Identities=15% Similarity=0.193 Sum_probs=215.9
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+.+.++++...+.|+.+.. |++ .||+|+. -.||+||+.++. ++.+|.+| ..+..+.|..+|+.++ ++.||+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 456788889888889999999 666 6666654 689999998764 58899988 7788899999999999 899999
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
++|||+..............+..+++.+....|++|..+|.|++||+....+...+- ....+|.++...|+ .+++.+.
T Consensus 107 ~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred EEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec
Confidence 999999985532211122334456666666679999999999999999887765554 33458999999976 8888899
Q ss_pred CCCeEEEEeCCCCc------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEE
Q 014104 252 SLGSIAISGLSSDQ------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQ 324 (430)
Q Consensus 252 ~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~ 324 (430)
..|..++|++-+.+ ++.+++. |.+.+..+.+||++++|++++.|.+++||+..+. +....+++|...++..+
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999987643 3555665 8889999999999999999999999999999987 66678899999999999
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
||.||+||+||+.|+.+++||+..++.++.+.+|..
T Consensus 266 -FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 266 -FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred -eccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 999999999999999999999999999999987665
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=260.66 Aligned_cols=283 Identities=23% Similarity=0.392 Sum_probs=235.9
Q ss_pred EEEEecc-ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 105 IDQWKAH-SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h-~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
...+.+| ...|.++.| ++| ++++++.|+.+++|+..+.+ ....+.+| ..+..++|++++++++ ++.|+++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4555565 789999999 566 99999999999999997777 66666555 5677799999999999 8899999999
Q ss_pred EcCCC-c--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 178 RRNGL-R--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 178 d~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
|++.. . .++..|...+ ..+++.+.+..+++|+.|++|++||+++++++..+.+|.+.|++++|+++ +++++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99444 3 2344444443 55667777777999999999999999999999999999999999999965 899999999
Q ss_pred CeEEEEeCCCCc--eeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce---EEEEEee
Q 014104 254 GSIAISGLSSDQ--RVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV---YSLQHLQ 327 (430)
Q Consensus 254 g~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~l~~~s 327 (430)
+.|++||+.++. ++..+.+.... +++++.|+|++.++++++.|+.+++||++.+..+..+.+|...+ .+.. .+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc-cc
Confidence 999999999999 56777663333 69999999999999999999999999999999999999998653 3333 57
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-- 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-- 405 (430)
+.+.++++|+.|+.|++||+.++..+..+.+|. ...+..++++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-----------------------------------~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-----------------------------------KAAVSDLSSHPT 433 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-----------------------------------CCceeccccCCC
Confidence 789999999999999999999988888887652 2466667774
Q ss_pred CeEEEEee--CCCeEEEEEec
Q 014104 406 MKKVVTTH--NSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~--~Dg~v~vw~~~ 424 (430)
.+++++++ .|+.|++|..+
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 67788888 79999999865
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.4e-34 Score=236.98 Aligned_cols=245 Identities=17% Similarity=0.217 Sum_probs=216.8
Q ss_pred EEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 145 VEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
.+.+.+| +-+.++++.|-++.++ ++.|+++.|||+.+++..+... .-..+..+.++.-+|++++++.|+.|+.||++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 3445555 5688899999999999 8999999999999998543322 22334567788889999999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
..+.++.+.+|-+.|.|++.+|. +.+++|+.|.++++||+++...+..+.+ |..+|..+.+.|....+++|+.|++|+
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999987 8999999999999999999999999998 999999999999888999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
+||++.++....+..|...|.+++ .+|....+++++.| .|+-|++..|+.++.+.+
T Consensus 303 lWDl~agkt~~tlt~hkksvral~-lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg---------------------- 358 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALC-LHPKENLFASASPD-NIKQWKLPEGEFLQNLSG---------------------- 358 (460)
T ss_pred EeeeccCceeEeeecccceeeEEe-cCCchhhhhccCCc-cceeccCCccchhhcccc----------------------
Confidence 999999999999999999999999 99999999999877 599999999988887655
Q ss_pred cccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 381 RLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|+..|++++. +..++++|++.|.+.+||.++|-.
T Consensus 359 --------------h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 359 --------------HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred --------------ccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 5558888888 478899999999999999987743
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=248.41 Aligned_cols=267 Identities=16% Similarity=0.251 Sum_probs=228.8
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
++..|++.|-++.+. -. +++++-.+|.|.|||.++...++.+... .++....|-...+.++ |+.|..|++|+.++.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 455689999999994 44 9999999999999999999999999864 5667788888888888 889999999999998
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEE
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~ 257 (430)
+.+ +..|.. ....+.+.|..|.+++++.|-+|++||.+.. .+.+++++|..-|++++|+|. +.+++++-|++|+
T Consensus 88 ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 88 EKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 854 444443 3566778888899999999999999999765 688999999999999999974 7999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
+|.+.+..+..++++ |...|.|+.|-+.| .+|++|+.|.+|+|||.++..++.++.+|...|..+. |+|.-..+++
T Consensus 167 VWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~-fhp~lpiiis 244 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF-FHPELPIIIS 244 (794)
T ss_pred EEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE-ecCCCcEEEE
Confidence 999999999999997 89999999998755 5999999999999999999999999999999999997 9999999999
Q ss_pred EcCCCeEEEEEcCCCceEEEE----------EeccCcceeeeccCCceEEE
Q 014104 336 GGIDGVLRVLDQNTGEVLSRC----------VMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~s~d~~v~~ 376 (430)
||.||+|+||+..+-+...++ ..+.+...++.|..+|.+.+
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999998876544444 33444445666666666544
No 39
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=239.84 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=234.6
Q ss_pred HHHHHHHcccchhhcccCCEeEEEEeccccceeEEEecCC---eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEE
Q 014104 84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDF 159 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~ 159 (430)
++.+++...+..+.+.. ..+..|.||.+.|.|++-..+ .++||+.||.|++||+...++..++..|. -+.-+++
T Consensus 40 Ey~RALNAtKleR~fak--PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 40 EYTRALNATKLERVFAK--PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV 117 (433)
T ss_pred HHHHHhhhHHHHHHhhc--cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe
Confidence 44444433333332322 356678999999999998544 89999999999999999999999999886 4666887
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 160 DFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 160 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
.. +..+.++.|.+|+.|.++..- ....+.......+.....+..+++++. .|.|||.+-..++..+.--.+.|.++
T Consensus 118 ~~-~~~~tvgdDKtvK~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 118 TQ-TSFFTVGDDKTVKQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cc-cceEEecCCcceeeeeccCCc-ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 77 555559999999999988741 111111122222333333444777776 59999998888999998888899999
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecC
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRIS 316 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 316 (430)
.|+|. ..|++|+.|+.|.+||++++.+++++. ..-.-..++|+|.+-.+++|++|..++.||++. ..++....+|
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 99986 688889899999999999999988876 344678899999888889999999999999997 4677888999
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
.+.|.++. |||.|+-+++||.|.+|+||.++.+..-..+.. . --
T Consensus 272 vsAV~dVd-fsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--k---------------------------------RM 315 (433)
T KOG0268|consen 272 VSAVMDVD-FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--K---------------------------------RM 315 (433)
T ss_pred ceeEEEec-cCCCcchhccccccceEEEeecCCCcchhhhhH--h---------------------------------hh
Confidence 99999999 999999999999999999999986643322211 0 01
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..|.||.| |.+++++||+|+.||+|.....++
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 46889998 789999999999999999776554
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-31 Score=267.51 Aligned_cols=288 Identities=13% Similarity=0.131 Sum_probs=222.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----e----eEEeeecCCceeEEEEec-CCCEEE-EEeCCeEE
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----K----CVEEYSLPNAASLVDFDF-DESKIV-GLIGTRIC 175 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~ 175 (430)
+.+|.+.|.+++| +++ ++++|+.|++|+|||..+. . ....+.++..+..++|++ ++..|+ ++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4569999999999 455 9999999999999997542 1 222334455566788876 466777 88899999
Q ss_pred EEEcCCCccc--ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-C-CCEEEEE
Q 014104 176 IWRRNGLRSV--FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-E-DQLIISG 250 (430)
Q Consensus 176 vwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~~~ 250 (430)
+||+.+++.+ +..|.+. +..+++.+ .+..|++|+.||+|++||+++++.+..+..+ ..|.++.|+ + +..+++|
T Consensus 559 lWd~~~~~~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEECCCCeEEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999987643 2333333 23344443 3445999999999999999999988888754 689999996 3 4799999
Q ss_pred eCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC------CceeeeeecCCCceEEE
Q 014104 251 SSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT------MKSLWETRISPNVVYSL 323 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~l 323 (430)
+.||.|++||+++++ .+..+.+ |...|.++.|. ++.+|++++.|++|++||++. .+++..+.+|...+..+
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred eCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 999999999998765 4566665 88899999997 678999999999999999974 35677899999999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
. ++|++.+|++|+.|+.|++|+......+..+....... + .......|...|.+++
T Consensus 715 ~-~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~----------~-------------~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 715 G-LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP----------V-------------SGLEVDDASQFISSVC 770 (793)
T ss_pred E-EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc----------c-------------cccccCCCCcEEEEEE
Confidence 8 99999999999999999999988776655443221100 0 0000123556799999
Q ss_pred E--cCeEEEEeeCCCeEEEEEe
Q 014104 404 V--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
| ++..|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9 5789999999999999986
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-31 Score=238.47 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=238.1
Q ss_pred EEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 106 DQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.++.||...|.+++++++ .++..+..+.+++|+..+.+++.++... .+.+..|.|.+++++ |...|.+.++|+....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 467899999999999665 4444445679999999999999999875 666788999888888 8999999999998876
Q ss_pred c--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC-----Cee--e------EEeecCCCCeEEEEecCC-CEE
Q 014104 184 S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-----RKC--S------QIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 184 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~--~------~~~~~~~~~i~~~~~~~~-~~l 247 (430)
. ....|.+. ...++..+++..+++|+.|.+|++||..- +.. + ++++ -...|.|+.++|+ .++
T Consensus 446 l~Eti~AHdga-IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 446 LVETIRAHDGA-IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhhccccc-eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEE
Confidence 4 33445554 45677788888899999999999999641 211 1 1121 3568999999987 899
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+.+--|.+|++|-+.+.+..-.+.+ |.-||.||..+||++.++||+.|..|++|-+.-|.+...+-+|.+.|.++. |-
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~-F~ 601 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ-FL 601 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE-Ec
Confidence 9999999999999999999889988 889999999999999999999999999999999999999999999999999 88
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|....+.++|.|+.|+-||-..-+.++.+.+|.. .|+|++. +
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~------------------------------------ev~cLav~~~ 645 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS------------------------------------EVWCLAVSPN 645 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchh------------------------------------eeeeeEEcCC
Confidence 9999999999999999999998899999876554 8888887 6
Q ss_pred CeEEEEeeCCCeEEEEEecC
Q 014104 406 MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|.+++|+|.|.+||+|.-..
T Consensus 646 G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CCeEEeccCCceeEeeeccC
Confidence 88999999999999998543
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=218.82 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=215.2
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
=+.+|.||.++|+....+.+ ..++++.|-+.++||.-+|..++.|.+.+-+..++|+.|.++|+ ++.+.-+++||++
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 47799999999999999766 88999999999999999999999999989999999999999999 8889999999999
Q ss_pred CCcccc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEE
Q 014104 181 GLRSVF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~ 257 (430)
..+... ..+.+.+ .-+-|+..+..+++++.|++|++||.++++.++.+. .+.+|+++.++++..+++....+.|+
T Consensus 131 ~p~App~E~~ghtg~I-r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~ 208 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGI-RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVK 208 (334)
T ss_pred CCCCCchhhcCCCCcc-eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeE
Confidence 877443 3344443 234455556669999999999999999999999997 57889999999886677777889999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+||..+-..++.++ ....|.+..++|+...+++|+.|..++.||..+++.+..+ ++|.++|.++. |+|+|..-++|
T Consensus 209 Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr-FSPdGE~yAsG 285 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR-FSPDGELYASG 285 (334)
T ss_pred Eeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE-ECCCCceeecc
Confidence 99999999988887 4568999999999999999999999999999999999885 89999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCce
Q 014104 337 GIDGVLRVLDQNTGEV 352 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~ 352 (430)
|.||+|++|.+..++.
T Consensus 286 SEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceEEEEEecCCCc
Confidence 9999999999876554
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=226.54 Aligned_cols=241 Identities=19% Similarity=0.309 Sum_probs=213.0
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....|+||++.|..+.|. .| ++++++.|-.+++||.++ .++++...+| +.+..+.|-|.|++++ ++.|.+|+.|+
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 356789999999999994 44 999999999999999987 5667776666 5677799999999999 88999999999
Q ss_pred cCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-----------C-
Q 014104 179 RNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-----------D- 244 (430)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-----------~- 244 (430)
+.++..+ +..+.. -+..+....++..+++++.|.++++|-+.++++...++.|.-+|.+++|.| +
T Consensus 222 ~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred cccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 9998754 444444 334555555666699999999999999999999999999999999999854 1
Q ss_pred ----CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 245 ----QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 245 ----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
.++.+++.|++|++||+.++.++.++.+ |...|..++|+|.|++|+++..|+++++||++++++...+..|..-|
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee
Confidence 4899999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
+++. |+.+-.++++|+-|-++++|.-
T Consensus 380 t~lD-fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLD-FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEe-cCCCCceEEeccccceeeeeec
Confidence 9999 9999999999999999999973
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.1e-33 Score=233.83 Aligned_cols=237 Identities=15% Similarity=0.260 Sum_probs=206.2
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
..+..+.|.|+|+.|+ ++..|.+.+|+..+-. .+...|+.. +..+.++.++..+++|..+|.|++|+..- +.++.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-VRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-ceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence 4677899999999998 8999999999986543 345555544 45677778888899999999999999753 44555
Q ss_pred eecCC-CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 229 IRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 229 ~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+..|. ..|++++|+|+ ..|+++++||+|+|||....+....+.+ |.-.|.+++|+|...++++|+.|..|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 65555 89999999975 7999999999999999999888888887 888999999999999999999999999999999
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
++++.++.+|...|..+. |+|++++|+++|.|..++++|+++.+.++++++
T Consensus 254 g~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---------------------------- 304 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---------------------------- 304 (464)
T ss_pred cchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHHHHHhhc----------------------------
Confidence 999999999999999999 999999999999999999999998777777765
Q ss_pred ccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 387 CIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|...|++++| ....|++|+.||.|..|.+...++
T Consensus 305 --------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 305 --------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred --------chhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 5558999988 478899999999999999885444
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-31 Score=211.76 Aligned_cols=293 Identities=18% Similarity=0.237 Sum_probs=235.4
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.|+||..+++.+.++ +| +|+|++.|.++.||-..+|+.+.++.+| +.+.++.++.+.+.++ ++.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 478999999999995 55 9999999999999998899999999998 5677899999999999 999999999999999
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEec-----CCeEEEEECC-------CCeeeEEeecCCCCeEEEEecC-CCEEEE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMY-------SRKCSQIIRMHCAPVTSLSLSE-DQLIIS 249 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~~~-~~~l~~ 249 (430)
+.+.....+..+..+.+.+.+..++.... .+.|.++|++ ..+++..+..+.+.++.+-|.| +++|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 99888888888888888888887555543 4789999998 4456778888889999999997 589999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
|..||.|..||+++|+....-...|...|+.+.++|+..++++++.|.+-++||+++.+.++++.. ..+|++.+ ++|.
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa-isP~ 242 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA-ISPL 242 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee-cccc
Confidence 999999999999998766555444888999999999999999999999999999999999988875 47899998 8898
Q ss_pred CCeEEEEcCCCeEEEE--EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 330 TSTLVVGGIDGVLRVL--DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
...++.|+.....-|= +.+.|+....+ .++..++++.+. ++|-++|++|+| +
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArF-----------------------yh~i~eEEigrv-kGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARF-----------------------YHLIFEEEIGRV-KGHFGPINSVAFHPD 298 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhH-----------------------HHHHHHHHhccc-cccccCcceeEECCC
Confidence 8878777643322211 11111111111 111111122222 578899999999 6
Q ss_pred CeEEEEeeCCCeEEEEEecC
Q 014104 406 MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|+..++||+||.||+.-++.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 89999999999999987754
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.6e-31 Score=213.62 Aligned_cols=258 Identities=15% Similarity=0.208 Sum_probs=217.9
Q ss_pred HHHcccchhhcccCCE--------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC
Q 014104 88 ELAMKHHRFALEEGRI--------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP 151 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~--------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 151 (430)
...|.+.+..+..|+. ....++||.++|..+.+ .++ .+++++.|.+|+.||.++|+.++.++.|
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h 131 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH 131 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence 4566777777777765 24567899999999999 455 9999999999999999999999999988
Q ss_pred Cc-eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NA-ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~-~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
.. +.++.-+.-|..++ ++.|+++++||+.+...+...........++|...+..+++|+-|+.|++||++.+....+
T Consensus 132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 55 34455444566666 6779999999999887665555555566677777788899999999999999999999999
Q ss_pred eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC----CceeEEEecCC---CCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----DQRVATLRSTD---CTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+.+|.++|+.+..+++ .++.+-+.|.++++||++. .+++..+.++. ......++|+|+++.+.+|+.|..++
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 9999999999999975 8999999999999999984 34466666521 22566789999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+||......+..+.+|.+.|.+++ |+|....|.+++.|.+|++=+
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~-Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVD-FHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecccccEEEEcCCcceeEEEee-ecCCCcEEEEeccCceeEeec
Confidence 999999899999999999999999 999999999999999998743
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-30 Score=242.45 Aligned_cols=242 Identities=21% Similarity=0.339 Sum_probs=205.8
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-ccccCCCC--ceeeeeEEEEcCCceEEEecCCeEEEEEC-CCCeee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDM-YSRKCS 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~ 226 (430)
..+..+.|+++|+.++ ++.++.+++|+..+.. .......+ ..+..+++.+++..+++++.|+++++||+ ..+..+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 5677799999999988 7899999999996665 12222222 33556777788888999999999999999 556899
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+++++|...|++++|+|. +++++|+.|++|++||+++++++..+.+ |...|++++|++++++|++++.|+.|++||+.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 999999999999999976 7999999999999999999999999998 88899999999999999999999999999999
Q ss_pred CCc--eeeeeecCCCc--eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 306 TMK--SLWETRISPNV--VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 306 ~~~--~~~~~~~~~~~--v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
++. ++..+..+... ++++. |+|++.++++++.|+.+++||+..+..+..+..|....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~------------------ 379 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV------------------ 379 (456)
T ss_pred CCceeeeecccCCCCCCceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc------------------
Confidence 998 56777776655 88888 99999999999999999999999999999998876620
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+... ++.++++|+.|+.|.+|++.++..
T Consensus 380 ---------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 380 ---------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred ---------------eeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 02222222 588899999999999999997653
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.2e-29 Score=230.44 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=246.1
Q ss_pred EeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
...-++.||..+|+++.|+ .| .|+|||.|+.|.+||+-...-+..+.+|.. +.-.-|..+.+.++ .+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 3456789999999999995 45 999999999999999998788888888744 44455666667777 88999999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC------------------------CeeeE-------
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------------------------RKCSQ------- 227 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------------~~~~~------- 227 (430)
+++... +..+-.+...+.+++..+..+++++.|+.+++|++.. ++.+.
T Consensus 178 L~tqhC-f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 178 LETQHC-FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred ccccee-eeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 998763 3334444445566666667799999999999998810 00000
Q ss_pred --------------------------------------------------------------------------------
Q 014104 228 -------------------------------------------------------------------------------- 227 (430)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (430)
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence
Q ss_pred -------------------------------EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 228 -------------------------------IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 228 -------------------------------~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
.+.+|...|.+++++.++.++..+..+.+++|+..+.++++++.. +
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~ 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---G 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---c
Confidence 012567778889998776666666678999999999999999974 3
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-----Cc
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-----GE 351 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-----~~ 351 (430)
.+.+..|-|.++++++|...|.+.+||+.+...+.+.++|.+.+++++ .+||++.+++||.|.+|++||..- |.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~-~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS-LSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee-ecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 899999999999999999999999999999999999999999999999 999999999999999999999751 22
Q ss_pred eEEEEEec-------cCcceeeeccCCceEEEee-----ccccc-CCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 352 VLSRCVMD-------IGSASSSSNKVSGVIERNE-----GRRLS-AGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 352 ~~~~~~~~-------~~~~~~~~~s~d~~v~~~~-----~~~~~-~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
..+.+..+ ++.+..+..||||.+.... +.-+. ...++....-+|.-||.|+.+ |++.++|||.|.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 22222222 3345778888888653211 11000 112233334689999999877 799999999999
Q ss_pred eEEEEEecCCC
Q 014104 417 YIRLWKFNYSD 427 (430)
Q Consensus 417 ~v~vw~~~~~~ 427 (430)
.|+||-++-|+
T Consensus 573 nVKiWGLdFGD 583 (888)
T KOG0306|consen 573 NVKIWGLDFGD 583 (888)
T ss_pred ceEEeccccch
Confidence 99999988774
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=242.70 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=212.7
Q ss_pred eEEE-EeccccceeEEEec--CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQ-WKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~-l~~h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+.. +.||.+.|.+++++ ++++++|+.|.++++||..+|++...+.+| ...+.++...+..++ |+.|.+|++|++
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~~~~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCLTIDPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEEEccCceEeeccCCceEEEEec
Confidence 3444 99999999999997 559999999999999999999999999976 334445555666666 789999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
+++..+..... +...+.++...++.+++|+.||+|++||+.+++++..+.+|...|.++.+.+.+.+++|+.|++|++|
T Consensus 319 ~n~~~l~l~~~-h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 319 TNGACLNLLRG-HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVW 397 (537)
T ss_pred cCcceEEEecc-ccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEee
Confidence 98875432222 55566888888899999999999999999999999999999999999988654789999999999999
Q ss_pred eCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEc
Q 014104 260 GLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 260 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|+++. +++.++.+ |..-+..+.+ .+++|++++.|++|++||..+++++..+.+ |...|..++ +. ...+++++
T Consensus 398 dl~~~~~c~~tl~~-h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-~~--~~~il~s~ 471 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQG-HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA-LG--KEEILCSS 471 (537)
T ss_pred cCCchhhhhhhhcC-Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEee-cC--cceEEEEe
Confidence 99999 99999987 7777776666 678999999999999999999999999998 668888887 43 46788999
Q ss_pred CCCeEEEEEcCCCceEEEEEe
Q 014104 338 IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.||++++||++++++.+.+..
T Consensus 472 ~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred cCCeeEEEecccCchhhhhhh
Confidence 999999999999999887743
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.7e-30 Score=204.85 Aligned_cols=243 Identities=16% Similarity=0.228 Sum_probs=200.3
Q ss_pred Eeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 146 EEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 146 ~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
+.+.. .+++..+.|+-+|++.+ ++.|.+|++|+...+..+ ...|.. .+.......++..+++++.|..|.+||+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCc-eeeeccccccccccccCCCCceEEEEEcc
Confidence 34444 36778899999999998 889999999999887643 333333 33345556667779999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC--CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
+|+.++.+.+|.+.|+.++|+.+ ..+++|+.|.++++||.++ .++++.+.. ....|.++.. .+..+++|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v--~~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDV--AEHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEe--cccEEEeeccCCc
Confidence 99999999999999999999965 8999999999999999885 456777776 5668999988 5678999999999
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
++.||++.|+....+-+| +|+++. |+++++..++++.|+++++-|-.+|++++.+++|.+..
T Consensus 167 vRtydiR~G~l~sDy~g~--pit~vs-~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e--------------- 228 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGH--PITSVS-FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME--------------- 228 (307)
T ss_pred EEEEEeecceeehhhcCC--cceeEE-ecCCCCEEEEeeccceeeecccchhHHHHHhcccccce---------------
Confidence 999999999888776664 799998 99999999999999999999999999999999877621
Q ss_pred cccccCCcccccCCCCCCCCee-EEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 379 GRRLSAGCCIDRIPKTIRPPIT-CLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+. |+.-....+++|++||.|.+||+..+..
T Consensus 229 ------------------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 229 ------------------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ------------------eeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 0111 1222467799999999999999977653
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.1e-30 Score=235.24 Aligned_cols=300 Identities=17% Similarity=0.243 Sum_probs=236.3
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.|+..+..|-.++|. .. +++++-..|.|++||..-+.++..|..| +++..++|+|+...++ |+.|-.|++|+.++.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 355567788899994 44 9999999999999999999999999987 5677799999999999 888899999999998
Q ss_pred cccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
+.++... +|. +..+.+...-|.++++|.|.+|+||+.++++++..+.+|.--|+|..|+|. ++++++|-|.+|+||
T Consensus 84 rclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 8665432 222 233334444455999999999999999999999999999999999999985 899999999999999
Q ss_pred eCCCCc-----------------------------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--
Q 014104 260 GLSSDQ-----------------------------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-- 308 (430)
Q Consensus 260 d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 308 (430)
|+.--+ ..+.+++ |+..|..++|+|.-.++++|+.|+.|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 985210 1133444 88899999999999999999999999999987543
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
.+.+.++|.+.|.++. |+|....+++.|.|++|+|||+...+.++++.-..+...+++..+...++.
T Consensus 242 EvDtcrgH~nnVssvl-fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA------------ 308 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVL-FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA------------ 308 (1202)
T ss_pred eehhhhcccCCcceEE-ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee------------
Confidence 4567889999999998 999999999999999999999999999999876666554444444444321
Q ss_pred ccCCCCCCCCe---------eEEEEcCeEEEEeeCCCeEEEEEecCC
Q 014104 389 DRIPKTIRPPI---------TCLAVGMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 389 ~~~~~~h~~~v---------~~v~~~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+|.+.+ .+.+.+++.|.-.- |..|+.+|+.+.
T Consensus 309 ----AgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 309 ----AGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQ 350 (1202)
T ss_pred ----eecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeecccc
Confidence 2222221 12334444444444 778888888764
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6.4e-30 Score=213.80 Aligned_cols=240 Identities=15% Similarity=0.153 Sum_probs=200.7
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+..+.||.+.|+|+.|+ +| +||||+.+|.|+||+..++.....+... +...-+.|+|.+..|+ |+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 567889999999999994 66 9999999999999999999888888643 5566699999999888 999999999999
Q ss_pred CCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--------------------------
Q 014104 180 NGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------------------------- 231 (430)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------- 231 (430)
..+. .++..+... ...-.+.++++.++++..||+|++||+.+++++..+..
T Consensus 178 p~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSP-CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCC-cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 8843 355554443 33456777888899999999999999999987766530
Q ss_pred -------------------------CCCCeEEEEecC---C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 232 -------------------------HCAPVTSLSLSE---D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 232 -------------------------~~~~i~~~~~~~---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
+...+.++.+.| . .+.++|+-||+|.+||+.+.+..+.+. |..+|..+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~ 334 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLK 334 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEE
Confidence 111122333332 2 467889999999999999888777776 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++ ++|+.++++|+|.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence 988 68999999999999999999999999999999999999 99999999999999999999875
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=203.12 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=212.9
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee--cC-CceeEEEEec-CCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS--LP-NAASLVDFDF-DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd 178 (430)
+.+++|...|.+++| .+| .|++|+.|+++.+|+++..+...... +| ..+.-++++| ++..++ ++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 467889999999999 466 99999999999999998876554433 34 3455578877 455566 88899999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEE
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIA 257 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~ 257 (430)
...++.+............++.+.+.++++++.|..|...|.++.+.....+ ....+.-+.|+ ++++++.....|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9998876655554445568899999999999999999999999887776655 44567788888 557777777789999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|......+++..++. |.....|+.|+|+|++||+|+.|..+.+||+...-+++.+..+.=+|..+. ||.+|++||+||
T Consensus 173 ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS-FS~dg~~lASaS 250 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS-FSHDGRMLASAS 250 (313)
T ss_pred EEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE-eccCcceeeccC
Confidence 999999999999998 888999999999999999999999999999999989999999999999999 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEE
Q 014104 338 IDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~ 357 (430)
+|-.|-|=++++|..+..++
T Consensus 251 EDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ccceEEeEecccCCeEEEee
Confidence 99999999999999998876
No 54
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=227.62 Aligned_cols=274 Identities=18% Similarity=0.269 Sum_probs=223.4
Q ss_pred EeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEE--eeecCCc-eeE-EEEec-CCC-EEEEEeCCeEE
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNA-ASL-VDFDF-DES-KIVGLIGTRIC 175 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~-~~~-~~~~~-~~~-~l~~~~~~~i~ 175 (430)
..-+.+.||...|..+++-++ .++++|.||++++|+-..++.+. .+.++.+ +.. +++.+ ++. .+.++.|..+.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 455689999999999998555 89999999999999987666554 3444433 222 55554 333 44499999999
Q ss_pred EEEcCCCccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeC
Q 014104 176 IWRRNGLRSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
+|...+.... +..|. ..+++++..... +++|+.|.++++|-. +++...+.+|+.+|++++.-|.+.+++|+.
T Consensus 85 v~~~~~~~P~~~LkgH~---snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsa 159 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHK---SNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSA 159 (745)
T ss_pred EEecCCCCchhhhhccc---cceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccC
Confidence 9999987743 44444 445777755444 799999999999985 677778999999999999998889999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
|.+|++|.- ++.+++|.+ |..-|+.+++-|++ .+++++.||.|+.|++ +++.+.++.+|.+-|+++. ...++..
T Consensus 160 DKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis-~~~~~~~ 233 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS-MALSDGL 233 (745)
T ss_pred cceeeeccC--Cchhhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEE-ecCCCCe
Confidence 999999985 788999998 99999999999765 4778899999999999 6999999999999999999 7788899
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVT 411 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t 411 (430)
++++++|+++++|+.. ++.+.+..... .|+++.+ .+.-+++
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPtt------------------------------------siWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTT------------------------------------SIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCcc------------------------------------ceEEEEEeeCCCEEE
Confidence 9999999999999976 77777764332 6777776 4566999
Q ss_pred eeCCCeEEEEEecC
Q 014104 412 THNSKYIRLWKFNY 425 (430)
Q Consensus 412 ~~~Dg~v~vw~~~~ 425 (430)
|+.||.||||..+.
T Consensus 276 g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDK 289 (745)
T ss_pred eccCceEEEEEecc
Confidence 99999999998763
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.4e-30 Score=204.28 Aligned_cols=256 Identities=17% Similarity=0.257 Sum_probs=209.2
Q ss_pred Hcccchhhccc-CCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEE
Q 014104 90 AMKHHRFALEE-GRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI 166 (430)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l 166 (430)
+.++....|.. .+..+.++.||++.|+|+..+.. +++||+.|.++++||+++|+++..++.+..+..+.|+++|+++
T Consensus 29 aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 29 AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLI 108 (327)
T ss_pred cCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence 33344455555 77899999999999999999543 9999999999999999999999999999999999999999999
Q ss_pred EEEeC------CeEEEEEcCCC-------ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEee
Q 014104 167 VGLIG------TRICIWRRNGL-------RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIR 230 (430)
Q Consensus 167 ~~~~~------~~i~vwd~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 230 (430)
+.+.| +.|.++|+... +.. ...+. .......|.+.++.|++|..||.|..||+++|+ .+...+
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 86554 56899998732 222 22222 334556777888889999999999999999984 556667
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE--E-------
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA--S------- 300 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~------- 300 (430)
.|...|+.+.++++ .++++++.|.+-++||.++-+.++++. ...+|.+.+++|...+++.|+..... .
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G 265 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG 265 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccceecccccceEEecCCceeeeeeeeccccc
Confidence 89999999999987 899999999999999999999999998 56799999999988888876543222 2
Q ss_pred -----EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 301 -----CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 301 -----i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.|++-..+.+..+++|-++|++++ |+|+|+..++|+.||.|++.-.+.
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvA-fhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVA-FHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeE-ECCCCcccccCCCCceEEEEEecc
Confidence 222222345677899999999999 999999999999999999986653
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.8e-31 Score=216.13 Aligned_cols=275 Identities=16% Similarity=0.231 Sum_probs=224.7
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---------cCCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---------LPNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
|....+.|..| ||| +|++|+.||-|.+||..+|+..+.++ ....+.+++|+.|...++ |+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44566788888 677 99999999999999999988765543 246788899999999999 9999999999
Q ss_pred EcCCCcccccCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVFPSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
.+.++..+......|...+.| ++.++..+++++.|.++++.-+.+|++++.+++|.+.|+...|.++ ..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999998765444344333344 4445566999999999999999999999999999999999999965 8999999999
Q ss_pred eEEEEeCCCCceeEEEecC-CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCC---CceEEEEEeeCC
Q 014104 255 SIAISGLSSDQRVATLRST-DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISP---NVVYSLQHLQND 329 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~s~~ 329 (430)
+|++|+..+.+++.+|+.. .+.+|.++..-|.. ..++++....+|+|.++. |+.+..+.... +...+.. .+|.
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~-lSpk 448 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI-LSPK 448 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE-ecCC
Confidence 9999999999999998753 23378888877754 578888889999999987 77777765432 3333444 8999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
|.++++.+.|+.++.|.+.+|+..+++..|.. .|..++- +.+
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEk------------------------------------dvIGl~HHPHqN 492 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK------------------------------------DVIGLTHHPHQN 492 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccc------------------------------------cccccccCcccc
Confidence 99999999999999999999999999987655 4444554 356
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
.+++=++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 689999999999995
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.8e-31 Score=223.29 Aligned_cols=276 Identities=17% Similarity=0.270 Sum_probs=226.7
Q ss_pred EEEEeccccceeEEEe-cC-CeEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
...+..|.+.|..+.| ++ +.|++|+.|..|++|+....+ .+.++.+. +.+..+.|.+++..++ ++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3456789999999999 45 599999999999999987765 55666654 5677899999999888 88999999999
Q ss_pred cCCCcc--cccCCCCceeeeeEEEE--cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCC
Q 014104 179 RNGLRS--VFPSREGTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLG 254 (430)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 254 (430)
++..+. ++.+|.+.+ .+..+ ....+++|+.|.+|+.||+....|.+++- ....+..+..+ ...+++|..|+
T Consensus 248 vd~~r~~~TLsGHtdkV---t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-~~~~~SgH~Dk 322 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKV---TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-ISDVISGHFDK 322 (459)
T ss_pred ccchhhhhhhcccccce---eeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec-ceeeeeccccc
Confidence 998773 455555543 44433 33339999999999999999988887765 34456666664 45788999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----CceEEEEEeeCCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP----NVVYSLQHLQNDT 330 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~l~~~s~~~ 330 (430)
+|++||++++......+. .+.|+++..+++|..|.+.+.|.++.+.|+++.+....+.... ...+.+. |||++
T Consensus 323 kvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv-fSpd~ 399 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV-FSPDG 399 (459)
T ss_pred ceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE-ECCCC
Confidence 999999999999999884 4599999999999999999999999999999988777665321 3366676 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeE
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKK 408 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~ 408 (430)
.|+++||.||.|+||++.++++...+..... .+.|++++|+ |..
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s----------------------------------~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTS----------------------------------NAAITSLSWNPSGSG 445 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCC----------------------------------CcceEEEEEcCCCch
Confidence 9999999999999999999999998876433 1379999995 899
Q ss_pred EEEeeCCCeEEEEE
Q 014104 409 VVTTHNSKYIRLWK 422 (430)
Q Consensus 409 l~t~~~Dg~v~vw~ 422 (430)
+++++.++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999994
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=225.10 Aligned_cols=251 Identities=14% Similarity=0.198 Sum_probs=213.3
Q ss_pred eEEEEeccccceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.++.+.-..-+|++..| . .+++++|+.|..|+||+.++++.++.|+.| +-+.+++.+|..-+++ ++.|-.|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 56777778889999888 3 459999999999999999999999999987 6688899999988888 777889999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSL 253 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~d 253 (430)
+.+-......++|...++++++++++ +++++.|++|++|.+.+..+..++++|...|+|+.+-++ .++++|++|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 98764444444444444555544433 999999999999999999999999999999999999965 499999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
.++++||..+..+++++++ |...|..+.|+|.-..+++|+.||+++||+..+.+...++.-..+.+++++ ..+.+..+
T Consensus 207 ~tiKvWDyQtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~-~~k~~~~i 284 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEG-HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA-AHKGDGKI 284 (794)
T ss_pred ceEEEeecchHHHHHHhhc-ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe-ecCCCCeE
Confidence 9999999999999999998 888999999999999999999999999999999988888887889999999 77777888
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+.|...|.|. ..+-.+++..++.
T Consensus 285 ~vG~Deg~i~-v~lgreeP~vsMd 307 (794)
T KOG0276|consen 285 AVGFDEGSVT-VKLGREEPAVSMD 307 (794)
T ss_pred EEeccCCcEE-EEccCCCCceeec
Confidence 8887777554 4455455554443
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.8e-29 Score=248.33 Aligned_cols=256 Identities=17% Similarity=0.253 Sum_probs=203.1
Q ss_pred CCeEEEEecCCCeeEEeee------cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--------cccCCCCceee
Q 014104 131 DKVMRLWSLEGYKCVEEYS------LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--------VFPSREGTFMK 195 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--------~~~~~~~~~~~ 195 (430)
+|.+++|+..+.+....+. +.+.+..++|++++++++ ++.|+.|++|+.+.... ...........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 6778999888765544433 234567799999999998 88899999999864210 11111112233
Q ss_pred eeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 196 GLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 196 ~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
.+++.+. +..+++++.||+|++||+.+++.+..+.+|.+.|++++|+| + .+|++|+.|++|++||++++..+..+..
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 3455443 45599999999999999999999999999999999999995 4 7899999999999999999999888874
Q ss_pred CCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 273 TDCTGIKTLCYN-PCSRLVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 273 ~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
...+.++.|+ ++|.+|++|+.||.|++||+++.+ .+..+.+|...|.++. |. ++.+|++++.|++|++||+..+
T Consensus 617 --~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 --KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred --CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEEEEECCCEEEEEeCCCC
Confidence 3579999995 578999999999999999998765 5677889999999999 75 6789999999999999999743
Q ss_pred ------ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 351 ------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 351 ------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
.++..+ .+|...++++++ ++++|++|+.|+.|++|+
T Consensus 693 ~~~~~~~~l~~~------------------------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 693 ISGINETPLHSF------------------------------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred ccccCCcceEEE------------------------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 233333 345667788877 588999999999999999
Q ss_pred ecCC
Q 014104 423 FNYS 426 (430)
Q Consensus 423 ~~~~ 426 (430)
...+
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 7644
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-28 Score=198.63 Aligned_cols=284 Identities=16% Similarity=0.226 Sum_probs=228.1
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe--CCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI--GTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~--~~~i~vwd 178 (430)
.+.|..-.+.|+++.|+ +| ++++++.|-++++||..+++.++++..+ -++..++|......++ ++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 34566678899999994 55 8999999999999999999999999876 4567788888777777 555 78999999
Q ss_pred cCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 179 RNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+.+.+. .+.+|...+ ..+++++.++.+++++.|++|++||++..++...+.....+ .++|.|. -++|++...+.
T Consensus 87 l~dNkylRYF~GH~~~V-~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRV-NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSEL 163 (311)
T ss_pred eecCceEEEcCCCCceE-EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCe
Confidence 998874 456665554 55788888888999999999999999988888777644333 5788876 56667766669
Q ss_pred EEEEeCCCC--ceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc--eEEEEEeeCC
Q 014104 256 IAISGLSSD--QRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV--VYSLQHLQND 329 (430)
Q Consensus 256 i~vwd~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~l~~~s~~ 329 (430)
|++||++.- .+..++.- ......+.|.|+|+|+.++.++..+.+++.|.-+|..+..+..+... +..-+.|+||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999853 33333332 23458899999999999999999999999999999998888877632 3333359999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKV 409 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l 409 (430)
++++++|+.||+|.+|++++|+.+..+.+. +..++.|+.|++++.
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-----------------------------------~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGP-----------------------------------NGGPVSCVRFNPRYA 288 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCC-----------------------------------CCCCccccccCCcee
Confidence 999999999999999999999999988763 335889999999998
Q ss_pred EEeeCCCeEEEEEecCC
Q 014104 410 VTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 410 ~t~~~Dg~v~vw~~~~~ 426 (430)
.-++.+..+-+|=....
T Consensus 289 mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 MFVSASSNLVFWLPDED 305 (311)
T ss_pred eeeecCceEEEEecccc
Confidence 77788889999976543
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.4e-30 Score=235.01 Aligned_cols=286 Identities=17% Similarity=0.268 Sum_probs=202.5
Q ss_pred eEEEEe-ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC--------------CEE
Q 014104 104 DIDQWK-AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--------------SKI 166 (430)
Q Consensus 104 ~~~~l~-~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l 166 (430)
..+.+. +|.+.|+++.| +|| |||+||.||.|+||.+...+....-..........+..++ +..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345667 89999999999 577 9999999999999998663331111110000001111111 111
Q ss_pred E---EEeCCeEEEEEcCCC---cccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 167 V---GLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 167 ~---~~~~~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
. +..... .+.+.... +..+....+|...++.+++..+. |++++.|.+|++|++...+|++.|. |..-|+|+
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 1 111111 11111111 11233445566666777776555 9999999999999999999999997 99999999
Q ss_pred EecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--
Q 014104 240 SLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-- 315 (430)
Q Consensus 240 ~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 315 (430)
+|+| +++|++|+-||.|++|++...+.+.-.. ...-|++++|.|+|+..++|+.+|.+++|++...+.......
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9997 4899999999999999998776655444 346899999999999999999999999999998766554321
Q ss_pred C------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 316 S------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 316 ~------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
| ...|+++.++.-+...|++.+.|..|+|+|.++..++..+++....
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------------------------- 546 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------------------------- 546 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC---------------------------
Confidence 1 1379999955444446777889999999999888888888864441
Q ss_pred cCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 390 RIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
++..--++..||++|++|++|..|.||+.+.
T Consensus 547 -----~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 547 -----SSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -----CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1111122444899999999999999999853
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=201.43 Aligned_cols=252 Identities=13% Similarity=0.170 Sum_probs=200.3
Q ss_pred CCeEEEEecCCCe---eEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcc---cccCCCCceeeeeEEEEc
Q 014104 131 DKVMRLWSLEGYK---CVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS---VFPSREGTFMKGLCMRYF 202 (430)
Q Consensus 131 dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~ 202 (430)
.|.+.|-++...+ ....+...+...-++|+++....+ ++.||++++||+..... .++.|..++ .++...
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV---~Svdwn 113 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREV---YSVDWN 113 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhhe---EEeccc
Confidence 6789999886443 344555667788899998654433 89999999999665443 344454443 444433
Q ss_pred C---CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 203 D---PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 203 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
. ..+++++.|++|++|+..-++.+.++.+|...|...+|+|. +++++++.|+++++||++..-....++. |...
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~E 192 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSE 192 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccce
Confidence 2 23888899999999999999999999999999999999975 8999999999999999986544444776 7789
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCc-eE
Q 014104 278 IKTLCYNP-CSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGE-VL 353 (430)
Q Consensus 278 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~-~~ 353 (430)
+.++.|+. +.+.|++|+.|+.|++||+++ ..++.++.+|.-.|..+. |||.. ..|++++.|=+++|||...+. .+
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhhhccccceEEecccccchhhh
Confidence 99999986 456888999999999999998 457889999999999999 88865 488999999999999987443 23
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEEEe
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+.. .|+.-|..+.| ++.++++++-|+.+.||+-
T Consensus 272 e~~~------------------------------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVD------------------------------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh------------------------------------ccceEEeccccccccCceeeecccccceeeecc
Confidence 3332 35556777777 5889999999999999984
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-28 Score=201.11 Aligned_cols=244 Identities=15% Similarity=0.221 Sum_probs=199.7
Q ss_pred EeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 103 IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.++..+..|.++|++++.+.-+++|||.|-+|+|||+.+...+..+-.| +.+.++.|.++-.
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S----------------- 96 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS----------------- 96 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-----------------
Confidence 3567789999999999999889999999999999999988777766655 3344444433211
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
...|++|+.||.|.+|+...-+++..+++|.+.|+.++++|. .+.++.+.|+.+++||
T Consensus 97 ---------------------~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 97 ---------------------KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred ---------------------hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 013899999999999999999999999999999999999986 7778889999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+-+|+.-..++- ....+.+.|+|.|.+++.+..++ |-+|.+.+.....++... ..+.++. | -++..|++|+.|+
T Consensus 156 LV~Gr~a~v~~L--~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~-~r~l~~~-~-l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 156 LVRGRVAFVLNL--KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP-KRILCAT-F-LDGSELLVGGDNE 229 (362)
T ss_pred hhcCccceeecc--CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc-ccceeee-e-cCCceEEEecCCc
Confidence 999998777764 33455699999999999888876 999999887766655433 4455665 4 3577899999999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE----cCeEEEEeeCCC
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV----GMKKVVTTHNSK 416 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----~~~~l~t~~~Dg 416 (430)
.|.+||.+++.+...+.+|.. .|-++.+ ++.+|+|+|.||
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~------------------------------------RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHEN------------------------------------RVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred eEEEeccCCCccceeeecchh------------------------------------heeeeEEEecCCceEEEEeccCc
Confidence 999999999888888876554 7888775 368999999999
Q ss_pred eEEEEEecCC
Q 014104 417 YIRLWKFNYS 426 (430)
Q Consensus 417 ~v~vw~~~~~ 426 (430)
.|+|||++..
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999866
No 64
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=205.71 Aligned_cols=288 Identities=18% Similarity=0.255 Sum_probs=230.7
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.++.|.||.+.|+.++...+ .+.+++.|.+.+||.+++++++.+|.+| +.+.++.|++.+..++ ++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 56788999999999998544 8999999999999999999999999998 6788899999999988 899999999972
Q ss_pred C----CCc-----------cc------------------------ccCCCCceee--eeEEEEcCCceEEEecCCeEEEE
Q 014104 180 N----GLR-----------SV------------------------FPSREGTFMK--GLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 180 ~----~~~-----------~~------------------------~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
. .++ .. +....+|... ...|...++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 100 00 0000111111 12233345569999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
|+++++.+..+.+|....+.++-+|. .++++.+.|.+.++||++.. ..+..|.+ |...|+++.|..+ ..+++|+.|
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~d-d~vVSgSDD 377 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTD-DRVVSGSDD 377 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cccceeEEEEecC-CceeecCCC
Confidence 99999999999999999999999987 78889999999999999843 34566777 8899999999865 568899999
Q ss_pred CeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 297 GYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 297 g~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
.+|++||+++++ ++.+++. ..+++.++ .+..++.++.--.+..|++||+. |..+..++..
T Consensus 378 rTvKvWdLrNMRsplATIRt-dS~~NRva-vs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrt---------------- 438 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRT-DSPANRVA-VSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRT---------------- 438 (481)
T ss_pred ceEEEeeeccccCcceeeec-CCccceeE-eecCCceEEeccCCceEEEEecC-CCccccCCcc----------------
Confidence 999999999864 5666654 47788888 88888888888888999999997 6666655432
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEEc----CeEEEEeeCCCeEEEEEecCCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAVG----MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
...+|...|+|.+|. -.-|+++|-|..+.=|++...+
T Consensus 439 ---------------sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 439 ---------------SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ---------------cccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 226788999999993 2348999999999999998754
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=201.80 Aligned_cols=287 Identities=13% Similarity=0.195 Sum_probs=231.4
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC------------C------eeEEeeecC-CceeEEEEe
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------Y------KCVEEYSLP-NAASLVDFD 160 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~-~~~~~~~~~ 160 (430)
.++...+..|..++.+.+| +|| +++||+.|..|+|.|++. + ..++++..| +.+..+.|+
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3467788999999999999 577 999999999999999862 1 234444444 678889999
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCc--ccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCC
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLR--SVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHC 233 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~ 233 (430)
|....|+ ++.|++|+++|+.... ..+ ...+.+.+..+++.+.+..+++|....++++||+++-++...- ..|+
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999 8999999999998653 222 2234455667788888888999999999999999998876543 4688
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
+.|+++.+++. ++.++|+.||.|++||--+++++.++...|.+ .|.+..|..+|+++.+.+.|..+++|.+.+++++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999999965 89999999999999999999999999877765 89999999999999999999999999999999998
Q ss_pred eeecCC-----CceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCC
Q 014104 312 ETRISP-----NVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG 385 (430)
Q Consensus 312 ~~~~~~-----~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~ 385 (430)
++.+.. .--+... |+....+++.-. ..+.+.-||.+++..+.-+.
T Consensus 342 ~YtGAg~tgrq~~rtqAv-FNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---------------------------- 392 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAV-FNHTEDYVLFPDEASNSLCSWDARTADRVALLS---------------------------- 392 (430)
T ss_pred EEecCCcccchhhhhhhh-hcCccceEEccccccCceeeccccchhhhhhcc----------------------------
Confidence 887642 1112222 666666666554 45789999999877665554
Q ss_pred cccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 386 CCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 386 ~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+|++.+.++.-+ +.-++|||.|..+|+|--.
T Consensus 393 -------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 393 -------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -------cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 4677888888774 6779999999999999644
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=213.96 Aligned_cols=278 Identities=18% Similarity=0.263 Sum_probs=208.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCee----EEeeec--CCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC----VEEYSL--PNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.|++|+..|.++++ +.| .|+|||.|.+|++||+..... .+.+.. .+.+.++.|++.+..|+ .+.....+++
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 58899999999999 567 999999999999999976432 122221 35788899999999888 8888899999
Q ss_pred EcCCCccc-----------ccCCCCceeeeeE--EEEcCCc-eEEEecCCeEEEEECCCCe-eeEEee-----cCCCCeE
Q 014104 178 RRNGLRSV-----------FPSREGTFMKGLC--MRYFDPE-AVVGCEDGTARVFDMYSRK-CSQIIR-----MHCAPVT 237 (430)
Q Consensus 178 d~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~~-----~~~~~i~ 237 (430)
|-++.+.. +....+|+....| |.+.... +++++.||++++||+...+ ..+.++ +..-+++
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 98765421 2334556554444 4444433 9999999999999997654 233332 2234789
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEeCCCC--ceeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceee
Q 014104 238 SLSLSED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCT--GIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLW 311 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~ 311 (430)
.++|+++ ..|++|+.||+|.+||..+. .....+...|.. .|+|+.|+++|++|++-+.|+++++||+++. +++.
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 9999976 78999999999999997543 334455555766 8999999999999999999999999999974 4554
Q ss_pred eeecCC--CceEEEEEeeCCCCeEEEEc------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 312 ETRISP--NVVYSLQHLQNDTSTLVVGG------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 312 ~~~~~~--~~v~~l~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
...+-. -+-+..+ |||+.++|++|. ..|.+.+||..+-..++.+....
T Consensus 402 ~~tgL~t~~~~tdc~-FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~----------------------- 457 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCC-FSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST----------------------- 457 (641)
T ss_pred hhcCCCccCCCCccc-cCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC-----------------------
Confidence 443322 2334555 999999999987 35789999999888888876532
Q ss_pred CCcccccCCCCCCCCeeEEEEcC--eEEEEeeCCCeEEEE
Q 014104 384 AGCCIDRIPKTIRPPITCLAVGM--KKVVTTHNSKYIRLW 421 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw 421 (430)
..|..+.|+. +.|+.|+.||+++||
T Consensus 458 -------------aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 458 -------------ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -------------ceEEEEeecchhhheeeecCCCceEEE
Confidence 3667777764 347888888998886
No 67
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.8e-27 Score=220.70 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=168.2
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC-CCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD-ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
|+.++.|++|+......+..+.+| ..+..++|+|+ +..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~l---------------------------------------- 89 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEI---------------------------------------- 89 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCE----------------------------------------
Confidence 566788899988776677777766 44566777765 344
Q ss_pred eEEEecCCeEEEEECCCC--------eeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 206 AVVGCEDGTARVFDMYSR--------KCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
|++|+.||+|++||+.++ .++..+.+|...|.+++|+|+ . ++++++.|++|++||+++++.+..+. +.
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~ 167 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MP 167 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cC
Confidence 555555666666665432 234467789999999999985 3 56789999999999999998887776 55
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE----eeCCCCeEEEEcCCC----eEEEEEc
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH----LQNDTSTLVVGGIDG----VLRVLDQ 347 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~----~s~~~~~l~s~~~dg----~i~vwd~ 347 (430)
..|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+....+ |++++.+|++++.|+ .|+|||+
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 68999999999999999999999999999999999999999876544331 458889999988774 7999999
Q ss_pred CC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 348 NT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 348 ~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++ ++++..+..+.. .+.+..... ++.++++|+.|+.|++|++.
T Consensus 248 r~~~~pl~~~~ld~~----------------------------------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 248 KNTTSALVTMSIDNA----------------------------------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCCCceEEEEecCC----------------------------------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 85 566665543222 112222211 37789999999999999997
Q ss_pred CCC
Q 014104 425 YSD 427 (430)
Q Consensus 425 ~~~ 427 (430)
.+.
T Consensus 294 ~~~ 296 (568)
T PTZ00420 294 LGS 296 (568)
T ss_pred CCc
Confidence 653
No 68
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.4e-27 Score=220.06 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=163.8
Q ss_pred EEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCe-------eEEeeecC-CceeEEEEecCCCEEEEEeCCeEE
Q 014104 107 QWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYK-------CVEEYSLP-NAASLVDFDFDESKIVGLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~ 175 (430)
.+.||.+.|.+++|+ ++ +|++|+.|++|++||+.++. .+..+.+| ..+..++|+|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~------------ 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA------------ 137 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC------------
Confidence 478999999999994 44 99999999999999997642 23333333 223334444332
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
+..|++|+.|++|++||+++++.+..+.+|...|.+++|+|+ .++++++.|+
T Consensus 138 ---------------------------~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 138 ---------------------------MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred ---------------------------CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence 123889999999999999999999999999999999999976 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEe----CCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeC
Q 014104 255 SIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGT----TAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~ 328 (430)
+|++||+++++.+..+.+ |.+ .+..+.|.+++..+++++ .|+.|++||+++.. ++.....+......+.+|++
T Consensus 191 ~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred EEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 999999999999988887 544 455778898888777654 47899999998754 44333334333333334899
Q ss_pred CCCeEEEEc-CCCeEEEEEcCCCceEEEEEe
Q 014104 329 DTSTLVVGG-IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 329 ~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++.+|++++ .|+.|++||+.+++++.....
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 999998887 599999999999987776544
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-28 Score=216.78 Aligned_cols=262 Identities=16% Similarity=0.214 Sum_probs=218.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.|+.|. +..|.+|+..+++....... .+.+..+.|+++|.+|+ +..+|.|.+||....+.+-.....+...+-++..
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 555544 46899999999887766665 57788899999999999 9999999999998877654444445556677777
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
.+..+.+|+.|+.|..+|++..+.... +.+|...|..++|+++ .++++|+.|+.+.|||....+++..+.. |...|.
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVK 347 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVK 347 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-cceeee
Confidence 777799999999999999998875544 8899999999999976 8999999999999999988888888887 999999
Q ss_pred EEEEecCC-CEEEEE--eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCCceEE
Q 014104 280 TLCYNPCS-RLVFAG--TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 280 ~~~~~~~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~ 354 (430)
+++|+|-. .+||+| +.|+.|++||..+++.+..+... +.|.+|. |++..+-|+++- .++.|.||+..+.+.+.
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLI-WSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEE-EcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 99999954 577775 46999999999999999887754 7899999 999887666543 67789999999988888
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+.+|.. .|..+++ ||..+++|+.|.++++|++-.
T Consensus 426 ~l~gH~~------------------------------------RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTS------------------------------------RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcc------------------------------------eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 8766554 6666666 567799999999999999865
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=212.51 Aligned_cols=258 Identities=17% Similarity=0.198 Sum_probs=214.1
Q ss_pred HHcccchhhcccCCE----------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec
Q 014104 89 LAMKHHRFALEEGRI----------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL 150 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 150 (430)
+.|+++++.++.+.. ..+++.||..+|..+.| ||. +|++++.|..+.+||+.+|+....+..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 456777777777654 46789999999999999 454 999999999999999999999988886
Q ss_pred C--CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 151 P--NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~--~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
. ..+.+.+|.|||..++ |+.|+++..||+++... .+.......+..+++.+++..+++.+.|..|++++.++....
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 5 5677799999999988 89999999999998762 344444455677888899999999999999999999877666
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEec-CCCEEEEEeCCCeEEEEe
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNP-CSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~~~~~dg~i~i~d 303 (430)
..+. ...+|+++..+.+ .++++--.+..+.+||++..+.++++.++..+ -+..-+|.- +..++++|++|+.|+||+
T Consensus 390 ~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 390 GLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 5444 4578999999965 77778888999999999988888888873322 333445543 447999999999999999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcC
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~ 348 (430)
..+++++.++.+|...|++++ ++|.. .++|++|.||+|+||-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVs-wNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVS-WNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEe-cCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999999999999999 88765 478999999999999875
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.2e-27 Score=210.98 Aligned_cols=241 Identities=26% Similarity=0.416 Sum_probs=203.0
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEEEEe-CCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIVGLI-GTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~~i~vwd~ 179 (430)
....+.+|...+..+.+ +++ ++++++.||.|++||+.+++.+..+..+. .+..+.+++++..++++. ++.+.+||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 45677889999988888 555 99999999999999999888888887664 677799999988888555 999999999
Q ss_pred CCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 180 NGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
.+++...... .......+.+.+.+..+++++.+|.|++||+++++.+..+..|...+.++.|+|+ +.+++++.|+.|+
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 8765433222 1122334445555455777777999999999999999999999999999999987 5888888899999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++.+..+.. +...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...+.++. ++|++++|++++
T Consensus 203 i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~ 280 (289)
T cd00200 203 LWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA-WSPDGKRLASGS 280 (289)
T ss_pred EEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEE-ECCCCCEEEEec
Confidence 999999888888865 777999999999988888888899999999999999988999999999999 999999999999
Q ss_pred CCCeEEEEE
Q 014104 338 IDGVLRVLD 346 (430)
Q Consensus 338 ~dg~i~vwd 346 (430)
.||.|++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4e-27 Score=219.56 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=180.0
Q ss_pred ccceeEEEe-cC-CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 112 SVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 112 ~~~v~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
-..|..... .+ ..+++++.+..+..|+...+..+......+.. ......+..|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~-------------------------~~~~~~l~GH 74 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL-------------------------ASNPPILLGQ 74 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC-------------------------CCCCceEeCC
Confidence 334444444 34 47788888888888987655332211110000 0000112223
Q ss_pred CCceeeeeEEEE-cCCceEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEE
Q 014104 190 EGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAIS 259 (430)
Q Consensus 190 ~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vw 259 (430)
.+. +..+++.+ ++..|++|+.|++|++||+.++ +++..+.+|...|.+++|+|. ++|++|+.|++|++|
T Consensus 75 ~~~-V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGP-IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCC-EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 222 23344554 3345889999999999998754 356788899999999999975 689999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE-EEEEeeCCCCeEEEEc-
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGG- 337 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~- 337 (430)
|+++++.+..+.. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+... .+. |.+++..+++++
T Consensus 154 Dl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~-w~~~~~~ivt~G~ 231 (493)
T PTZ00421 154 DVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL-WAKRKDLIITLGC 231 (493)
T ss_pred ECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE-EcCCCCeEEEEec
Confidence 9999999888887 788999999999999999999999999999999999999998876543 444 778877777654
Q ss_pred ---CCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE
Q 014104 338 ---IDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT 411 (430)
Q Consensus 338 ---~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t 411 (430)
.|+.|++||+++.. ++.....+. ...+....| ++++|++
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~d~-----------------------------------~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDLDQ-----------------------------------SSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEeccCC-----------------------------------CCceEEEEEcCCCCEEEE
Confidence 47999999998654 333222111 123444444 5777888
Q ss_pred ee-CCCeEEEEEecCCCc
Q 014104 412 TH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 412 ~~-~Dg~v~vw~~~~~~~ 428 (430)
|+ .|+.|++||+..++.
T Consensus 277 ggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 277 GSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEeCCCeEEEEEeeCCce
Confidence 77 599999999988763
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=207.39 Aligned_cols=272 Identities=17% Similarity=0.223 Sum_probs=216.8
Q ss_pred eccccceeEEEecC----CeEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 109 KAHSVGVDQCRMKR----GLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 109 ~~h~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
..-.+.|.+++|++ +..+|+|. .+.+|+..+....+++. ....+..++|..||+.++ |...|.|+++|.++.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 33456899999943 35555554 79999998877777555 356788899999999999 778899999995552
Q ss_pred c--ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEE
Q 014104 183 R--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~ 257 (430)
. ..+..|+.. ...+-+++.+.. +++|+.|+.+++||+.+......+.+|++.|.|.+++|. .++++|+.||.|+
T Consensus 101 ~iLR~~~ah~ap-v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 101 VILRQLYAHQAP-VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHhhccCc-eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 2 233444433 234555555544 889999999999999988876688999999999999974 6899999999999
Q ss_pred EEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 258 ISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 258 vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
+||+++. ..+..+. |..+|..+.+-|.|..+++++.. .|++||+.+| +.+.....|...|+|+. +..++..|++
T Consensus 180 l~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS 255 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLS 255 (487)
T ss_pred EEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEE-eecCCceEee
Confidence 9999987 6677776 88899999999999999988765 5999999954 55555556999999999 8889999999
Q ss_pred EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEee
Q 014104 336 GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTH 413 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~ 413 (430)
|+-|+.|++||+.+.+.+..+.. .++|.+++. +++.++.|.
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~~-------------------------------------~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWKY-------------------------------------PGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cccccceEEEEccceEEEEeeec-------------------------------------ccceeeEEecCCCceEEEec
Confidence 99999999999988888888864 246777777 467788888
Q ss_pred CCCeEEEEEec
Q 014104 414 NSKYIRLWKFN 424 (430)
Q Consensus 414 ~Dg~v~vw~~~ 424 (430)
.||.+.+=+..
T Consensus 299 snGlv~~rr~~ 309 (487)
T KOG0310|consen 299 SNGLVSIRRRE 309 (487)
T ss_pred ccceeeeehhh
Confidence 88887765433
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=8.6e-29 Score=214.25 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=197.4
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC-CEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~ 179 (430)
++++|.||..+|..++|+ +| .++|+|.|+.+++||+++|+++..+.......++.|.|++ +.++ |..|+.|+.||+
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 678999999999999995 45 9999999999999999999999999998899999999998 4444 999999999999
Q ss_pred CCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 180 NGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
.+++.+. ..+-+. ...+.+..++..+++++.|++++||+.+.+-.++.+.. +.-...++..+|+ .+++.-+.|+.
T Consensus 330 Rs~kvvqeYd~hLg~-i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGA-ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred cchHHHHHHHhhhhh-eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 9998432 222222 23355566777799999999999999988766654432 2235567888876 89999999999
Q ss_pred EEEEeCCCCc---eeEEEecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC-
Q 014104 256 IAISGLSSDQ---RVATLRST-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT- 330 (430)
Q Consensus 256 i~vwd~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~- 330 (430)
|.++.+...- ....++++ ..+.-..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.+.+..+. |+|..
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~-wHP~e~ 487 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVD-WHPVEP 487 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEE-ecCCCc
Confidence 9999875422 22345542 123567789999999999999999999999999999999999999999999 77754
Q ss_pred CeEEEEcCCCeEEEEE
Q 014104 331 STLVVGGIDGVLRVLD 346 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd 346 (430)
..+||++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 5899999999999996
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-27 Score=198.65 Aligned_cols=249 Identities=18% Similarity=0.240 Sum_probs=199.3
Q ss_pred hhcccCCEeEEEEeccccceeEEEe--cCC---eEEEEeCCCeEEEEecCCCeeE----EeeecC-CceeEEEEecCCCE
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRM--KRG---LILTGVGDKVMRLWSLEGYKCV----EEYSLP-NAASLVDFDFDESK 165 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 165 (430)
+.|...+...+++.||.++|.++++ ++. .+++++.|.++++|.++.++.. +.-.+| ..+.+++..+++..
T Consensus 128 riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 128 RIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR 207 (423)
T ss_pred EEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe
Confidence 4455556678899999999998887 333 7999999999999998876543 223355 55777999999999
Q ss_pred EE-EEeCCeEEEEEcCCCc------------------------ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEE
Q 014104 166 IV-GLIGTRICIWRRNGLR------------------------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFD 219 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd 219 (430)
++ ++.|..+.+|+.+... ..+....+|...+.++.+.+.. +++++.|.+|+.||
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WD 287 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWD 287 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEE
Confidence 99 9999999999933210 0111223444444555554444 99999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCCC-EEEEEe
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCSR-LVFAGT 294 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 294 (430)
++++..+..+.+ ..++.++.++|. .++++|+.|..+++||.+++. ..+++.+ |.+.|.++.|+|... .|++|+
T Consensus 288 letg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 288 LETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred eecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEEe
Confidence 999999888874 568999999986 899999999999999999764 3456666 888999999999764 677999
Q ss_pred CCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 295 TAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 295 ~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.|+++++||+|+.+ ++..+.+|.+.|.++. |+ ++..+++|+.|++|+++.-.
T Consensus 366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vd-W~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD-WN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCCCcceeeccCCceEEEEe-cc-CCceEEeccCcceEEEeccc
Confidence 99999999999977 9999999999999999 64 57789999999999998643
No 76
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.7e-26 Score=209.44 Aligned_cols=323 Identities=14% Similarity=0.176 Sum_probs=245.9
Q ss_pred cCCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE--EEeCCeE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRI 174 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~i 174 (430)
+.++.+++++++...|+++.-++- .++.|..+|+|.++|+..++.+.+|+.. +.+..++|.-||..++ ++..|.+
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 345678999999999999988664 8999999999999999999999999996 8888899999999887 4556999
Q ss_pred EEEEcCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCC--C--eeeEEeecCCCCeEEEEec--CCCE
Q 014104 175 CIWRRNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYS--R--KCSQIIRMHCAPVTSLSLS--EDQL 246 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~i~~~~~~--~~~~ 246 (430)
.+||++..+........|. .....+.+..|.+++++.|..+++|=..+ | +.++.-.+|..|..++.|. .+.+
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 9999999875443333222 22344455666699999999998884443 3 3455556777777777776 2356
Q ss_pred EEEEeCCCeEEEEeC-----------------------------------------------------------------
Q 014104 247 IISGSSLGSIAISGL----------------------------------------------------------------- 261 (430)
Q Consensus 247 l~~~~~dg~i~vwd~----------------------------------------------------------------- 261 (430)
+.+++.|++.+.+++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 677777766665543
Q ss_pred CCCce-eEEEecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee---ecCCCceEEEEEeeCCCCeE
Q 014104 262 SSDQR-VATLRST----DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET---RISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 262 ~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~s~~~~~l 333 (430)
++... .+.+... ....+++++.++.|++.+.|+..|.|.+|++++|-....+ ..|.++|++++ ...-++.+
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla-~D~~n~~~ 508 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA-VDGTNRLL 508 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE-ecCCCceE
Confidence 22221 1112211 1246889999999999999999999999999999888887 58999999999 88888899
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccC---------cceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIG---------SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
++++.+|.+++||.....++..+..... .-.++....|-.+.+.+..+. .+.+...+|++.|++++|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTF 584 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEe
Confidence 9999999999999998887777765433 223455555666655444322 234455789999999999
Q ss_pred --cCeEEEEeeCCCeEEEEEecCCC
Q 014104 405 --GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
||++|++++.|++||+||+.++.
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcc
Confidence 69999999999999999999875
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-28 Score=223.15 Aligned_cols=229 Identities=14% Similarity=0.159 Sum_probs=196.3
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+..+++.+..|.++++-..|.|++||.+-+.++..+..|.++|..++|+|. .++++|++|-.|+||+..+.+++.++.+
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence 455777777888999999999999999999999999999999999999987 7999999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC---
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT--- 349 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~--- 349 (430)
|...|..+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|.. |+|....++++|-|-+|+|||+..
T Consensus 92 -HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq-FhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 92 -HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ-FHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred -ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec-cCCccceEEEecccceEEEEeecchhc
Confidence 888999999999999999999999999999999999999999999999999 999999999999999999999861
Q ss_pred -----C---------------------ceEEEEEeccCcc----------eeeeccCCceEEEeecccccCCccc-ccCC
Q 014104 350 -----G---------------------EVLSRCVMDIGSA----------SSSSNKVSGVIERNEGRRLSAGCCI-DRIP 392 (430)
Q Consensus 350 -----~---------------------~~~~~~~~~~~~~----------~~~~~s~d~~v~~~~~~~~~~~~~~-~~~~ 392 (430)
+ -.-..+.+|+.++ .+++|+.|..++.|.-.... .. ....
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK---aWEvDtc 246 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---AWEVDTC 246 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---ceeehhh
Confidence 1 0112333454444 56788889988776532211 11 1234
Q ss_pred CCCCCCeeEEEEcC--eEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAVGM--KKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+|...|+++-|++ +.++|.|+|++|||||+...+
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 78999999999976 789999999999999987543
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-26 Score=188.30 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=196.4
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeee
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~ 226 (430)
.+.+..+.|+.+|..++ ++.|..+++||...+..+...... ......++......++.++. |.+|+..++.+.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 35678899999999999 677889999999988765433322 23445666666666777766 889999999999999
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+.+.||...|.+++.+|. +.+++++.|++|++||++..++...+.. ..-..++|+|+|-++|++.....|++||++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 999999999999999985 8999999999999999998888777753 233457899999999999888899999999
Q ss_pred CC--ceeeeeecC---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 306 TM--KSLWETRIS---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 306 ~~--~~~~~~~~~---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
.. .+...+... ......+. |||||++|+.+...+.+++.|.-+|....++..++...
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~-FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~----------------- 232 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLE-FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG----------------- 232 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeE-EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC-----------------
Confidence 73 344444333 46788898 99999999999999999999999999999998876621
Q ss_pred cccCCcccccCCCCCCCCee-EEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 381 RLSAGCCIDRIPKTIRPPIT-CLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~-~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..++. +...|++++++|+.||+|.+|++++|++.
T Consensus 233 ---------------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 233 ---------------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ---------------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 01122 23347888999999999999999988753
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=186.19 Aligned_cols=237 Identities=15% Similarity=0.238 Sum_probs=197.6
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----ccCCCCceeeeeEEEEc-CCceEEEecCCeEEEEECCCCee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKC 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 225 (430)
..+..++|+.+|..++ ++.|+++.+|+++..+.. ...+.+.+.. +|+.+. ++.+++++.|.+|++||++++++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdq-l~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQ-LCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhh-heeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 4567799999999999 899999999999977532 3334444333 444444 44599999999999999999999
Q ss_pred eEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 226 SQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+..+....+.| -+.|+| +++++.++.|..|...|.++.+.+...+ ....+..++|+.++.+++.....|.|.|...
T Consensus 100 ~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 100 TARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred EEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 99888655555 466665 5899999999999999999988877766 4557888999988888887777899999999
Q ss_pred CCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 305 RTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 305 ~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
...+++..++.|.....++. |+|+|+++|+|+.|-.+.+||++.--+++.+.-+.-
T Consensus 177 psLkpv~si~AH~snCicI~-f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw----------------------- 232 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIE-FDPDGRYFATGSADALVSLWDVDELICERCISRLDW----------------------- 232 (313)
T ss_pred cccccccccccCCcceEEEE-ECCCCceEeeccccceeeccChhHhhhheeeccccC-----------------------
Confidence 99999999999999999999 999999999999999999999998888888765443
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+|..++| ||++|++||+|..|-|=++++|+++
T Consensus 233 -------------pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 233 -------------PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred -------------ceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 7888888 6889999999999988777777653
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8e-27 Score=210.99 Aligned_cols=283 Identities=17% Similarity=0.192 Sum_probs=221.2
Q ss_pred EEEEeccccceeEEEe-------------cCCeEEEEeCCCeEEEEecCCCeeEEe------------------------
Q 014104 105 IDQWKAHSVGVDQCRM-------------KRGLILTGVGDKVMRLWSLEGYKCVEE------------------------ 147 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------ 147 (430)
...+.-|...|+.+.. |.+.++|++.|++|++||++.+..-..
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 4455678887777643 345899999999999999876211111
Q ss_pred --------------eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-----eE
Q 014104 148 --------------YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-----AV 207 (430)
Q Consensus 148 --------------~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~ 207 (430)
+....++.+++++|++++|+ |...|.+++|++...+.+... +.|...+.|+.+..+. |+
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhh
Confidence 11223567899999999999 888999999999887644322 2333456888887665 89
Q ss_pred EEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEec-CC--CEEEEEeCCCeEEEEeCCCCceeEEEecC----CCCCeE
Q 014104 208 VGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLS-ED--QLIISGSSLGSIAISGLSSDQRVATLRST----DCTGIK 279 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~-~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~v~ 279 (430)
+++.|..|.|||+... .+++++.+|...|++++|. .+ ..+++++.|..|.+=-.+.......+..+ ....++
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 9999999999998654 5678999999999999998 44 57889999988755333221112222221 223789
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec---CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI---SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|++.|+.+++++++.|..|+|||+.+++..+.|++ |.+....+. ..|.|-||++.+.|.++.++|..+|+++.++
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 999999999999999999999999999999998875 446677777 8999999999999999999999999999988
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+| ...|+.+.| |.+.|++.+.||.|.||++..
T Consensus 680 ~GH------------------------------------sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGH------------------------------------SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCc------------------------------------chheeeeeecccchhheeecCCceEEEEECch
Confidence 764 458999999 678899999999999999864
No 81
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-26 Score=185.44 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=167.1
Q ss_pred eeEEeecCCCCeEEEEecCCC--EEEEEeCCCeEEEEeCCC---CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 225 CSQIIRMHCAPVTSLSLSEDQ--LIISGSSLGSIAISGLSS---DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.++.+++|.+.+..++|+|+. .|++|+.|+.|++|+... -.+...+...|...|++++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 457788999999999999874 899999999999999884 345556666688899999999999999999999999
Q ss_pred EEEeCCC--CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC---ceEEEEEeccCc----------ce
Q 014104 300 SCWDLRT--MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---EVLSRCVMDIGS----------AS 364 (430)
Q Consensus 300 ~i~d~~~--~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~----------~~ 364 (430)
.||.-.. .+++..+++|...|.+++ |+++|.+||+++.|++|-||.+..+ +++..+..|.+. -.
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Va-ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVA-WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEE-EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9998664 467889999999999999 9999999999999999999999854 456666666554 37
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
++++|-|.+++++.... ...-.......+|...|.+++|+ |.+|+++++|++|+||...
T Consensus 165 L~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 88999999998877665 44434444446788899999995 8899999999999999843
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=209.20 Aligned_cols=316 Identities=16% Similarity=0.225 Sum_probs=227.7
Q ss_pred cccccee---EEEe--cCC-eEEEEeCCCeEEEEecCCCe------eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 110 AHSVGVD---QCRM--KRG-LILTGVGDKVMRLWSLEGYK------CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 110 ~h~~~v~---~~~~--~~~-~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.|...|. ++.. +++ +|+|||.||.|++|+..... .+..++.| +-+.-+....+++.++ ++.|.+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555555 3333 455 89999999999999876421 24455555 3355567777887788 89999999
Q ss_pred EEEcCCCcc-cccCCCCceeeeeEEEE---cCCceEEEecCCeEEEEECCCCee--e--------EEee-cCCCCeEEEE
Q 014104 176 IWRRNGLRS-VFPSREGTFMKGLCMRY---FDPEAVVGCEDGTARVFDMYSRKC--S--------QIIR-MHCAPVTSLS 240 (430)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~--~--------~~~~-~~~~~i~~~~ 240 (430)
+|+...... -......|...+-|+++ ..+.+++|+.|+.|.+||+.++.. + ..+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999987641 11222223233344444 455599999999999999998732 2 2223 7888999999
Q ss_pred ecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc
Q 014104 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV 319 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 319 (430)
.++. ..+++|+..+.+++||.++++.+..+.+ |...|.++..++||..+++++.||+|++||+...+++.++..|...
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 9875 6889999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc-eEEEEEe---------ccCcceeeeccCCceEEEeecccccC---Cc
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE-VLSRCVM---------DIGSASSSSNKVSGVIERNEGRRLSA---GC 386 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~---------~~~~~~~~~~s~d~~v~~~~~~~~~~---~~ 386 (430)
|+++. .+|+-..+++|+.||.|+.=|+++.. +...++. +...-..-+.+.|+.|..|....... ..
T Consensus 258 VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~ 336 (735)
T KOG0308|consen 258 VWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSG 336 (735)
T ss_pred eEEEe-eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCC
Confidence 99999 89999999999999999999998742 2222221 11111225667788776554432211 00
Q ss_pred ccccCC---CC--------CC------CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 387 CIDRIP---KT--------IR------PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 387 ~~~~~~---~~--------h~------~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+.... .. |. .+|..-++ |-++++|-..+|.+.+||+-..+
T Consensus 337 ~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 337 DLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACV 396 (735)
T ss_pred CCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeee
Confidence 000000 00 11 11222222 57889999999999999986543
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.4e-27 Score=200.74 Aligned_cols=270 Identities=15% Similarity=0.197 Sum_probs=194.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
...+...-.|.+.|+.+.+ |.+ .+++++..+.|.|||..+..-.....+ .+ ..+..
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~--~Pdl~------------ 172 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------EC--RPDLR------------ 172 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cC--CCceE------------
Confidence 3455555679999999988 433 888899999999999775332221110 01 11111
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe-------eeEEeecCCCCeEEEEecC--CCEEE
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLSLSE--DQLII 248 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~~~--~~~l~ 248 (430)
+..|... ...++|....+. +++++.|++|.+||+.... +...+.+|...|..++|++ .++|+
T Consensus 173 -------L~gH~~e-g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~ 244 (422)
T KOG0264|consen 173 -------LKGHEKE-GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG 244 (422)
T ss_pred -------EEeeccc-ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhe
Confidence 1111111 112344443333 8999999999999986532 3467789999999999996 37999
Q ss_pred EEeCCCeEEEEeCCC--CceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 249 SGSSLGSIAISGLSS--DQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
+++.|+.+.+||+|+ .++...... |.+.|.|++|+|-+ ..||+|+.|++|++||+|+ .+++..+.+|...|..+.
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence 999999999999994 455555555 89999999999955 5778999999999999998 457889999999999999
Q ss_pred EeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|... .|++++.|+.+.|||+..-...+..... .|| ..++..+-.||...|..++
T Consensus 324 -WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda----------~dg------------ppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 324 -WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA----------EDG------------PPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred -eCCCCCceeEecccCCcEEEEeccccccccChhhh----------ccC------------CcceeEEecCccccccccc
Confidence 888764 7788999999999999743222221100 000 0112233468999999999
Q ss_pred Ec---CeEEEEeeCCCeEEEEEec
Q 014104 404 VG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 404 ~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
|+ .-.|+|+++|+.+.||+..
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 95 5679999999999999976
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5e-26 Score=186.71 Aligned_cols=260 Identities=14% Similarity=0.121 Sum_probs=203.7
Q ss_pred cccceeEEEec--CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..+.|..+.|+ .+.|+.++.||++++||.........+....+....+|.++...+.++.||.|+++|++++......
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 36789999995 3378888899999999999988888888878888888888777777999999999999998865555
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
........++..+....+++|+.|++|++||.+....+..+. ....|.++... ++.|+.|+.|..|.+||+++.....
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-CCEEEEeecCceEEEEEcccccchh
Confidence 444445555555557779999999999999998765655555 34589999885 4578888999999999999866543
Q ss_pred EEe-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCC---------CceEEEEEeeCCCCeEE
Q 014104 269 TLR-STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISP---------NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 269 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~l~~~s~~~~~l~ 334 (430)
+.. ....-.++|+++-|++.-.++++-||.|.+=.+... +....++.|. -+|++++ |+|--..++
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~-Fhp~~~tfa 248 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA-FHPIHGTFA 248 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE-eccccceEE
Confidence 222 224448999999999988999999999888665544 3334566664 3689999 999999999
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
||+.||.|.+||+.+.+.+..+......+..++++.||.
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 999999999999999998888876555444444444443
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=195.42 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=222.7
Q ss_pred cceeEEEecC--CeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--cc
Q 014104 113 VGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VF 186 (430)
Q Consensus 113 ~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~~ 186 (430)
..+.++.... ..++||+.|.++.++|..+++.+..+++|. .+..+.++++...++ ++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3566676633 599999999999999999999999999984 456688999988888 89999999999876542 33
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
..++. .+......+.+.++++++.||+..+.|++++..+...... .-.+++.+|+|+ .+|.+|+.|+.|++||+.+
T Consensus 300 ~~h~~-~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEE-PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccc-cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 33433 3556778888999999999999999999999887665532 235899999987 6888999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
+..+..|.+ |.++|..++|+.+|.+|++++.|+.|++||+|..+...++.... ..+.++. |.+.|.+|+.++.|=.|
T Consensus 379 ~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~-fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS-FDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE-EcCCCCeEEeecceeEE
Confidence 999999998 99999999999999999999999999999999888777766443 3688998 99999999999887777
Q ss_pred EEEEcCC--CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 343 RVLDQNT--GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 343 ~vwd~~~--~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
++++-.+ ..++..+. .|.+..+++.| +.++++++|.|..+
T Consensus 457 y~~~k~~k~W~~~~~~~------------------------------------~~sg~st~v~Fg~~aq~l~s~smd~~l 500 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELA------------------------------------DHSGLSTGVRFGEHAQYLASTSMDAIL 500 (506)
T ss_pred EEEecccccceeeehhh------------------------------------hcccccceeeecccceEEeeccchhhe
Confidence 7776433 23333333 35567889999 47889999999999
Q ss_pred EEEEe
Q 014104 419 RLWKF 423 (430)
Q Consensus 419 ~vw~~ 423 (430)
+++.+
T Consensus 501 ~~~a~ 505 (506)
T KOG0289|consen 501 RLYAL 505 (506)
T ss_pred EEeec
Confidence 99865
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5e-25 Score=173.16 Aligned_cols=283 Identities=14% Similarity=0.151 Sum_probs=214.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC------CCe------eE---Eeeec-CCceeEEEEecCCCEEE-E
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE------GYK------CV---EEYSL-PNAASLVDFDFDESKIV-G 168 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~------~~~------~~---~~~~~-~~~~~~~~~~~~~~~l~-~ 168 (430)
+...+..|.+++| |.| +.+.|++..+.+|--.. .+. +. +.-++ .+.+.+.+|+|+|+.++ +
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 3445678999999 555 88999999999987432 111 01 11223 36678899999999999 8
Q ss_pred EeCCeEEEEEcCCCcc-------cccCCCCceeeeeEEEEcCCc----eEEEe-cCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 169 LIGTRICIWRRNGLRS-------VFPSREGTFMKGLCMRYFDPE----AVVGC-EDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
+.|.+|++..++.... -+..+.+.+ ..+++...... +++++ .|..|++-|..+|+..+.+.+|++-|
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgti-rdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTI-RDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCce-eeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 9999999987664332 234444443 34555443322 55443 46778888999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 237 TSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
.++---++-++++|+.|.+|++||++-..++.++... ....|.++++.|.|++|++|-.|....+||++.++++
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 8875547789999999999999999998888877532 1247999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccccc
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
+.+..|...|.++. |+|...|+++++.|..|++=|+. |.+...+..-
T Consensus 267 q~f~phsadir~vr-fsp~a~yllt~syd~~ikltdlq-gdla~el~~~------------------------------- 313 (350)
T KOG0641|consen 267 QRFHPHSADIRCVR-FSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIM------------------------------- 313 (350)
T ss_pred eeeCCCccceeEEE-eCCCceEEEEecccceEEEeecc-cchhhcCceE-------------------------------
Confidence 99999999999999 99999999999999999999987 4433332210
Q ss_pred CCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 391 IPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 391 ~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
....|...+..+.|+ .--+++.+.|.++.+|-+.
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 002344556666674 3348899999999999764
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=188.97 Aligned_cols=287 Identities=16% Similarity=0.255 Sum_probs=193.4
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCee-----EE-eeecCCceeEEEEecCCCEEE--EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC-----VE-EYSLPNAASLVDFDFDESKIV--GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~l~--~~~~~ 172 (430)
-.+..|+||.+.|++++| +|| +|+|++.|++|++|++..-+. ++ .++ -+....+.|+||-+.++ .....
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCC
Confidence 356789999999999999 577 999999999999999875321 11 111 13566788999887765 44456
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
++++|.+...+. +. ..-...-||-. ..-+.|.-.+..+-...+ .++++++
T Consensus 156 ~l~vyk~~K~~d------G~------------------~~~~~v~~D~~-----~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 156 KLCVYKLVKKTD------GS------------------GSHHFVHIDNL-----EFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEEEeeeccc------CC------------------CCccccccccc-----ccchhcccceEEEeecCCceEEEEec
Confidence 677776543321 00 00011112210 111235556666666544 7999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---C-----ceeeeeecCCCceEEE
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---M-----KSLWETRISPNVVYSL 323 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~v~~l 323 (430)
.|..|.+||++ |+.+..+.. ....-+..+.+|+|+++++++---.|++|.+-- | ..+.++++|...|..+
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred CCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 99999999998 999999886 455677889999999999998878899998632 2 2456789999999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCC----C---ceEEEEE--ecc--CcceeeeccCCceEEEe------ecccccCCc
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNT----G---EVLSRCV--MDI--GSASSSSNKVSGVIERN------EGRRLSAGC 386 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~----~---~~~~~~~--~~~--~~~~~~~~s~d~~v~~~------~~~~~~~~~ 386 (430)
+ |+++...+++.|.||+.++||++- + +.+++.. .+. +.-.-+.-|++|.+... .......+.
T Consensus 285 a-Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 285 A-FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred e-eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 9 999999999999999999999862 1 1122211 000 00112233444443211 111112233
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
....+...|...|++++| +|++++|+|+ ..+++..-
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecC
Confidence 344556679999999999 5899999885 67888763
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=208.31 Aligned_cols=237 Identities=18% Similarity=0.214 Sum_probs=203.8
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
+.+.|+++.+ ++| +|++|..+|.|.|||..+.+.+..+.+++...+.++++++..+. |+.++.|..+|+...+....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 4889999999 455 99999999999999999999898888855666666666677777 99999999999998875544
Q ss_pred CCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe--CCCeEEEEeC
Q 014104 188 SREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS--SLGSIAISGL 261 (430)
Q Consensus 188 ~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~--~dg~i~vwd~ 261 (430)
...+|. +..+.+++++..+++|+.|+.+.|||....++...+..|.+.|.+++|+|- ++||+|+ .|+.|++||.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 333333 344556667777999999999999999888899999999999999999984 7888874 7999999999
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.++..+..+. ....|..|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++ ++|||..+++|+.|
T Consensus 376 ~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la-~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 376 NTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA-LSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE-ECCCCCEEEEeccc
Confidence 9999999887 5679999999999877775 44577899999999999999999999999999 99999999999999
Q ss_pred CeEEEEEcCCC
Q 014104 340 GVLRVLDQNTG 350 (430)
Q Consensus 340 g~i~vwd~~~~ 350 (430)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998754
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=7e-27 Score=203.33 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=221.4
Q ss_pred ccccceeEEEecCC--eEEEEeCCCeEEEEecCCC---eeEEeee---cCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGY---KCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.|..-|.++.+++- +++||+. |.|+|||+... ..+..+. ..+.+....+.+||+.|+ ++.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888888888543 8998886 78999998743 2233333 235567788999999988 8888999999998
Q ss_pred CCcccccC-CCC--ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 181 GLRSVFPS-REG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 181 ~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
.....+.. ... .....++++++.+..++++.||.|.|||+.+...++.+++|++.+.|+.++++ ..|.+|+-|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 77643322 111 22334556667777889999999999999999999999999999999999965 789999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+.||+++++.+.... ....|.++..+|++.+|++|-.++.+.+..... .....+..|.+.|.++. |.+-|+++++.
T Consensus 576 RcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlK-Fa~cGkwfvSt 651 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLK-FAYCGKWFVST 651 (705)
T ss_pred eehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEE-ecccCceeeec
Confidence 999999998877665 667999999999999999999999999988764 34456777889999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE--EEEcCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC--LAVGMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~~l~t~~~ 414 (430)
+.|+.+..|.+.-|..+...+. .+.|.+ |++|++++|||+.
T Consensus 652 GkDnlLnawrtPyGasiFqskE-------------------------------------~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKE-------------------------------------SSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred CchhhhhhccCccccceeeccc-------------------------------------cCcceeeeeccCceEEEecCC
Confidence 9999999999988877665543 235665 5558999999999
Q ss_pred CCeEEEEEec
Q 014104 415 SKYIRLWKFN 424 (430)
Q Consensus 415 Dg~v~vw~~~ 424 (430)
|..-.||.+.
T Consensus 695 dkkATVYeV~ 704 (705)
T KOG0639|consen 695 DKKATVYEVI 704 (705)
T ss_pred CcceEEEEEe
Confidence 9999999864
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.7e-27 Score=185.75 Aligned_cols=238 Identities=15% Similarity=0.218 Sum_probs=184.0
Q ss_pred eeEEEEec-CCCEEE-E-------EeCCeEEEEEcCCCcccc---cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEEC
Q 014104 154 ASLVDFDF-DESKIV-G-------LIGTRICIWRRNGLRSVF---PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDM 220 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~-------~~~~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~ 220 (430)
...+.|+| -.++|+ + ...|.+.|.++..+..+. .-........++++..... +++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 34577777 233333 2 235888999886443221 1112223345667666555 899999999999996
Q ss_pred CC-CeeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCEEEEEeCC
Q 014104 221 YS-RKCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRLVFAGTTA 296 (430)
Q Consensus 221 ~~-~~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 296 (430)
.. ..+++.++.|...|.++.|++ ...+++++.|++|++||...++.+.++.+ |...|....|+|. ++.+++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEccCC
Confidence 43 357889999999999999995 36788889999999999999999999998 8999999999995 5788899999
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEE
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
+++++||++..-....+..|...+.++.|-..+...|+||+.|+.|+.||+++-+ ++..+
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL------------------- 230 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL------------------- 230 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-------------------
Confidence 9999999987443344899998999999444566789999999999999998643 34443
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCCCc
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|.-.|..|.|+ ...|+|++.|-++||||...++.
T Consensus 231 -----------------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 231 -----------------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred -----------------cCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 3466688999885 45699999999999999986643
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.9e-26 Score=185.27 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=206.4
Q ss_pred ccccceeEEEecC---CeEEEEeCCCeEEEEecCC-CeeEEe--eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRMKR---GLILTGVGDKVMRLWSLEG-YKCVEE--YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
...+.|.+++|++ ++++.||.|++||+|+++. |..... ....+.+..++|+.||..++ ++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4578899999954 3788999999999999986 344322 23446778899999999988 999999999999999
Q ss_pred ccc-ccCCCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 183 RSV-FPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~-~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
+.. +..|.+.+ ..+.|..... .|++|+.|.+|+.||.+...++.++. -.+.+.++..- ..+++.+..+..|.+|
T Consensus 105 Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~-~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL-YPMAVVATAERHIAVY 181 (347)
T ss_pred Ceeeeeecccce-eEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc-CceeEEEecCCcEEEE
Confidence 754 44555554 3344443333 38999999999999999998888876 35677777763 4578888999999999
Q ss_pred eCCCCcee-EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCC---------ceEEEEEee
Q 014104 260 GLSSDQRV-ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPN---------VVYSLQHLQ 327 (430)
Q Consensus 260 d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---------~v~~l~~~s 327 (430)
+++++... +.......-.++|++..++....+.|+-+|.+.+..+..+ +.-..++.|.. .|++++ |+
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~-Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA-FH 260 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE-ee
Confidence 99876543 2333334458999999999998899999999999988876 44456777762 477888 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
|.-..|+|++.||+..+||-+....+.+.+.+++.+..-++..+|.++.
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 9999999999999999999998888888888888777777777777753
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-26 Score=198.89 Aligned_cols=237 Identities=20% Similarity=0.233 Sum_probs=193.8
Q ss_pred ecCCceeEEEEec-CCCEEEEEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 149 SLPNAASLVDFDF-DESKIVGLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 149 ~~~~~~~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
+.++.+..++|+| ++..++.+..-.+.+|+..+....- ...-...+...++..++..+++|...|.|+++|+.+...+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3457788899999 4556778888899999988766332 2233344556778888888999999999999998777788
Q ss_pred EEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEe
Q 014104 227 QIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWD 303 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d 303 (430)
+.+.+|+.++..+.|+|. ..+++|++|+.+++||+.+......+.+ |...|.|.+++|... .+++|+.||+|++||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 899999999999999963 6899999999999999999887556776 899999999999655 788999999999999
Q ss_pred CCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 304 LRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 304 ~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
++.. ..+.++. |..+|-++. +-|.|..+++++. +.|+|||+.+|.. +..+.
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl-~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~------------------------ 235 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVL-ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF------------------------ 235 (487)
T ss_pred eccCCceeEEec-CCCceeeEE-EcCCCCEEEEcCC-CeEEEEEecCCceehhhhh------------------------
Confidence 9986 5565654 778999998 7788899998875 5799999996644 33332
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...|||+.+ ++..|+|||-|+.|++||+.+
T Consensus 236 ------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 236 ------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ------------cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 25569999999 579999999999999999654
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.9e-27 Score=198.32 Aligned_cols=238 Identities=18% Similarity=0.238 Sum_probs=197.8
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+.+|.|..++|+.+.| +++ ++++++.|+.+++|++...+...++.+| +.+..+.|......++ ++.|.+|+.||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 56688889999999999 556 9999999999999999999999999997 4566677777666566 999999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
......-........ ..+......+++|-.|+.|++||+++..+......+. .|+++..+++ ..+++++.|.++.+
T Consensus 291 ~k~~C~kt~l~~S~c--nDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQC--NDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred hhhheeccccccccc--cceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence 986644333333222 2222224458999999999999999999999998764 9999999966 67888899999999
Q ss_pred EeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC--ceEEEEEeeCCCCeE
Q 014104 259 SGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN--VVYSLQHLQNDTSTL 333 (430)
Q Consensus 259 wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~s~~~~~l 333 (430)
.|+++.+....+... .....+.+.|+|++.|+++|+.||.|+||++.++++...+..... .|+++. |+|.|..|
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~-W~~sG~~L 446 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS-WNPSGSGL 446 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE-EcCCCchh
Confidence 999998888877642 122588899999999999999999999999999999888776543 599999 99999999
Q ss_pred EEEcCCCeEEEE
Q 014104 334 VVGGIDGVLRVL 345 (430)
Q Consensus 334 ~s~~~dg~i~vw 345 (430)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.7e-26 Score=195.29 Aligned_cols=274 Identities=16% Similarity=0.149 Sum_probs=209.9
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+..+..|.-+|.|++++ ++ +.++++.||+|.-|++.+++....+-....+.-....|-
T Consensus 134 ~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~------------------- 194 (479)
T KOG0299|consen 134 DFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL------------------- 194 (479)
T ss_pred cceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC-------------------
Confidence 356778999999999994 44 999999999999999999875522211100000000000
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
+.....|..+ ...+++++++.++++|+.|..|.|||.++.+.++.+++|.+.|.+++|-.+ +.+++++.|++|++|+
T Consensus 195 -k~~r~~h~ke-il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 195 -KESRKGHVKE-ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred -Ccccccccce-eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 0000122222 234566677888999999999999999999999999999999999999865 7899999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+.....+.++.+ |...|..+....-++.+-+|+.|+++++|++.. +....+.+|.+.+-+++++ +...+++||.+|
T Consensus 273 ~~~~s~vetlyG-Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG 348 (479)
T KOG0299|consen 273 IDQLSYVETLYG-HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNG 348 (479)
T ss_pred hhHhHHHHHHhC-CccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCc
Confidence 999888999988 888999999887788887888999999999953 3334577888899999844 456799999999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
.|.+|++...+++.+....++..... -+..+...|++++. ...++++|+.+|.|
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPEL------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCc------------------------cccccccceeeeEecccCceEEecCCCCce
Confidence 99999999999988887654411000 00122347899888 57889999999999
Q ss_pred EEEEecCC
Q 014104 419 RLWKFNYS 426 (430)
Q Consensus 419 ~vw~~~~~ 426 (430)
|+|.+..|
T Consensus 405 rLW~i~~g 412 (479)
T KOG0299|consen 405 RLWKIEDG 412 (479)
T ss_pred EEEEecCC
Confidence 99999887
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1e-26 Score=191.97 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=197.7
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----ccCCC-----CceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----FPSRE-----GTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
..+.+..|+|||++|+ ++-||-|.+||..+++.. ....+ ...+.+++++.++..+++|+.||.|++|.++
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4567789999999999 899999999999887632 11111 1222334444455569999999999999999
Q ss_pred CCeeeEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 222 SRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 222 ~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
+|.|++.+. .|+..|+|+.|+.+ ..+++++.|.++++.-+.+|+++..+++ |...|+...|+++|..+++++.||+|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCCCeEEEecCCccE
Confidence 999999997 89999999999954 7899999999999999999999999998 89999999999999999999999999
Q ss_pred EEEeCCCCceeeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe
Q 014104 300 SCWDLRTMKSLWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~ 377 (430)
++|+.++.+++.+++.. ..+|.++..+..+...++++...++|+|.++. |+.++++......
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkRE--------------- 436 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKRE--------------- 436 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCcc---------------
Confidence 99999999999888744 35778877565566789999999999999987 8888888753320
Q ss_pred ecccccCCcccccCCCCCCCCeeE-EEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITC-LAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
-.+-|.| ++..|.++.+.++|+.+.-+.+.+|+
T Consensus 437 -----------------gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 437 -----------------GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred -----------------CCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 0123433 44468889999999998888887764
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.7e-26 Score=213.60 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=221.0
Q ss_pred ecc-ccceeEEEe-cCC-eEEEEe--CCCeEEEEecCC------------CeeEEeeecC-CceeEEEEecCCCEEE-EE
Q 014104 109 KAH-SVGVDQCRM-KRG-LILTGV--GDKVMRLWSLEG------------YKCVEEYSLP-NAASLVDFDFDESKIV-GL 169 (430)
Q Consensus 109 ~~h-~~~v~~~~~-~~~-~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~ 169 (430)
-+| ...|.++.. +++ .++||+ .||.++||+.+. .+.+.+...| +.+.++.|++||++|+ |+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 344 456889988 677 999999 899999998643 1122233333 6788899999999999 88
Q ss_pred eCCeEEEEEcCC--Cc------------------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 170 IGTRICIWRRNG--LR------------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 170 ~~~~i~vwd~~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
.|+.|.+|.... .. .++..|...+ ..++|.+++..+++++.|++|.+||..+.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV-~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDV-LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcc-ceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 899999999873 00 1233444443 34677787888999999999999999999999999
Q ss_pred ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCC-----CCeEEEEEecCCCEEEEEeC----CCeE
Q 014104 230 RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDC-----TGIKTLCYNPCSRLVFAGTT----AGYA 299 (430)
Q Consensus 230 ~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~----dg~i 299 (430)
++|.+.|-.+.|.| +++|++-+.|++|++|++.+-...+.+..+.. ..+..+.|+|||++|++... -.++
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 99999999999998 59999999999999999877666666655332 26788999999999997632 3468
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCC-----CC------------eEEEEcCCCeEEEEEcCCCceEEEEEeccCc
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQND-----TS------------TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-----~~------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 362 (430)
.|.+-.+.+.-..+-+|.+++.++. |+|. .+ .+|+|+.|++|.||.....+++.....-
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvr-FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--- 323 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVR-FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--- 323 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEE-eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh---
Confidence 8888877777788999999999998 8762 11 5788999999999998776665544321
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
....|..++| ||..|+.+|.||+|.+..++.+
T Consensus 324 --------------------------------f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 324 --------------------------------FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------------------------hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 1257899999 5888999999999999998754
No 97
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3.8e-24 Score=186.48 Aligned_cols=311 Identities=15% Similarity=0.145 Sum_probs=230.8
Q ss_pred eEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecC-CCEEEEEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFD-ESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~~i~vwd~~ 180 (430)
..++...|.+.|.+++. -+|.|+||+.|+.|..|| ...+.++..+.++.. ..-.+.+. +..++++..+.|..=+++
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 34555699999999998 678999999999999999 666666666665332 22233332 335558888888877787
Q ss_pred CCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 181 GLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
++..+. ..+.. ....++..++.+.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|...++.|+..|...+.
T Consensus 358 ~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 358 NGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVL 433 (626)
T ss_pred CCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEE
Confidence 766443 33433 456677778888899999999999999 555555544 4578899999987799999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-Cceeeeee-cCCCceEEEEEeeCCCCeEEEEc
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETR-ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|.++...+..-. ...++++++|+|+|.+||.|+.|+.|++|-+.. +....... .+..+|+.+. ||+|+++|.+-+
T Consensus 434 d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLD-wS~Ds~~~~~~S 510 (626)
T KOG2106|consen 434 DTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLD-WSSDSQFLVSNS 510 (626)
T ss_pred ecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEee-ecCCCceEEecc
Confidence 999866555444 367999999999999999999999999999865 44433332 3338899999 999999999999
Q ss_pred CCCeEEEEEcCCCceEE---EEEeccC-------------------------cceeeeccCCceEEEeecccccCCcccc
Q 014104 338 IDGVLRVLDQNTGEVLS---RCVMDIG-------------------------SASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~---~~~~~~~-------------------------~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
.|-.|..|.....+.+. .++.... ...++++...|.+.++...+.+..+...
T Consensus 511 ~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h 590 (626)
T KOG2106|consen 511 GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH 590 (626)
T ss_pred CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce
Confidence 99999999544322221 1111100 1155677777888877776665544444
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
.. .+|++.|++|+| +...+++.+.|.+|..|++
T Consensus 591 e~-~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 591 EY-GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ee-ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 43 679999999999 4566666669999999986
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-25 Score=191.77 Aligned_cols=296 Identities=14% Similarity=0.207 Sum_probs=234.0
Q ss_pred chhhcccCCEeEEEEec----c--ccceeEEEecCC--eEEEEeCCCeEEEEecCC--CeeEEeeecC-CceeEEEEecC
Q 014104 94 HRFALEEGRIDIDQWKA----H--SVGVDQCRMKRG--LILTGVGDKVMRLWSLEG--YKCVEEYSLP-NAASLVDFDFD 162 (430)
Q Consensus 94 ~~~~~~~~~~~~~~l~~----h--~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~ 162 (430)
....+.+|.-.+..++. | .++|+++.|.+. .+++|+.||+++||.++. ...++.+... -++...+|.|+
T Consensus 189 ~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 189 RSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred ccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC
Confidence 34555666666666652 3 468999999655 999999999999998764 3445555543 45667899999
Q ss_pred CC-EEE-EEeCCeEEEEEcCCCccc----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 163 ES-KIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 163 ~~-~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
|. .++ ++....++.||+++.+.. ....+......+.++++++.|+..+..|.|.+....+++.+..++ -.+.|
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v 347 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVV 347 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEE
Confidence 99 555 777788999999987632 233344455667788899999999999999999999999998887 46889
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC------Cce
Q 014104 237 TSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT------MKS 309 (430)
Q Consensus 237 ~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~ 309 (430)
..++|+. +..|++.+.+|.|.+||++...+++.+.....-.-++++.+++|.+||+|+..|.|.|||..+ .++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 9999995 477888888999999999999999999852222446677789999999999999999999653 467
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
+..+..-...|++|. |+++++.|+.+| .+..+++-.+.+......++....
T Consensus 428 ik~~dNLtt~Itsl~-Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-------------------------- 480 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQ-FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-------------------------- 480 (514)
T ss_pred hhhhhhhheeeeeee-eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC--------------------------
Confidence 777776678899999 999999998877 567899999887777766654322
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.-+.|+|++| ++.+|+.|.++|.|.+|.+.
T Consensus 481 -------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 481 -------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1257999999 48999999999999999975
No 99
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.1e-24 Score=202.30 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=153.7
Q ss_pred eEEEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCee--------EEeeecC-CceeEEEEecCCCEEEEEeC
Q 014104 104 DIDQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYKC--------VEEYSLP-NAASLVDFDFDESKIVGLIG 171 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 171 (430)
.+..+.+|.+.|.+++|+ + + +|+||+.||+|+|||+.++.. +..+.+| ..+..++|+|++..+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i----- 140 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI----- 140 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE-----
Confidence 466789999999999994 3 3 999999999999999976421 1222222 223334444433221
Q ss_pred CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
+++++.|++|++||+++++.+..+. |...|.+++|+++ .+|+++
T Consensus 141 ----------------------------------LaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 141 ----------------------------------MCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred ----------------------------------EEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEE
Confidence 5788999999999999998777775 6678999999976 888889
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEE-----EEEecCCCEEEEEeCCC----eEEEEeCCC-CceeeeeecC--CC
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKT-----LCYNPCSRLVFAGTTAG----YASCWDLRT-MKSLWETRIS--PN 318 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~--~~ 318 (430)
+.|+.|++||+++++.+..+.+ |.+.+.+ ..|++++.+|++++.|+ .|++||+++ .+++..+..+ .+
T Consensus 186 s~D~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~ 264 (568)
T PTZ00420 186 CVGKHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA 264 (568)
T ss_pred ecCCEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence 9999999999999999999887 6654433 33558889999887764 799999995 5566554332 23
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
.+.... .+++|.++++|+.|+.|++|++..+.
T Consensus 265 ~L~p~~-D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 265 PLIPHY-DESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ceEEee-eCCCCCEEEEEECCCeEEEEEccCCc
Confidence 333332 45568899999999999999998764
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=7.5e-24 Score=190.23 Aligned_cols=264 Identities=14% Similarity=0.091 Sum_probs=195.9
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.++|++.|+.|++||+.+++.+..+..+..+..++|+++++.++ +..++.+.+||..+++.............+++.+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 82 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP 82 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence 67899999999999999999999888776677799999999775 4567999999999876543222222233455666
Q ss_pred cCCceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCCe
Q 014104 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
.+..+++ ++.++.+++||+.+++.+..+.. ...+.+++++|+ .++++++.++ .+.+||..+++....+. ....+
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~ 159 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRP 159 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCc
Confidence 6666554 45689999999998887777753 345678999976 6777777664 57788998887766554 23356
Q ss_pred EEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCC-----C--ceEEEEEeeCCCCeEEE-EcCCCeEEEEEcCC
Q 014104 279 KTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISP-----N--VVYSLQHLQNDTSTLVV-GGIDGVLRVLDQNT 349 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----~--~v~~l~~~s~~~~~l~s-~~~dg~i~vwd~~~ 349 (430)
..++|+|++++|+++ ..++.|++||+++++.+..+..+. . ....+. ++|+++++++ .+.++.+.+||+.+
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEEEEECCC
Confidence 789999999988654 468999999999988776654321 1 234576 8999998654 45577899999998
Q ss_pred CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe-eCCCeEEEEEecCC
Q 014104 350 GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT-HNSKYIRLWKFNYS 426 (430)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~-~~Dg~v~vw~~~~~ 426 (430)
++.+..+.. . ..+.+++| +|++|+++ +.+|.|++||+.++
T Consensus 239 ~~~~~~~~~-~------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 239 YEVLDYLLV-G------------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CcEEEEEEe-C------------------------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 887765432 1 24667777 57777765 56999999999987
Q ss_pred Cc
Q 014104 427 DK 428 (430)
Q Consensus 427 ~~ 428 (430)
+.
T Consensus 282 ~~ 283 (300)
T TIGR03866 282 KV 283 (300)
T ss_pred cE
Confidence 63
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=198.35 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=168.1
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
...+|+++.|+..+.|+..|.|-+|++++|-....+ ..|.++|+.++... ++.+++++.+|.+++||..+...+..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 445677778888899999999999999999888777 58999999999974 57899999999999999999888888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+. ....+.++..+.....++.+..|-.|.++|..+.+.++++.+|.+.|+.+. |||||++|++++.|++|++||+.+
T Consensus 531 l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 531 LR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred ec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccC
Confidence 87 455789999998888999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC-CeEEEEE
Q 014104 350 GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS-KYIRLWK 422 (430)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D-g~v~vw~ 422 (430)
+.++-.+... .+++.+.| +|.+|+|+..| .-|.+|-
T Consensus 608 ~~lID~~~vd-------------------------------------~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 608 GTLIDGLLVD-------------------------------------SPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cceeeeEecC-------------------------------------CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999877642 35677777 58899999998 5688885
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=189.53 Aligned_cols=276 Identities=14% Similarity=0.179 Sum_probs=200.0
Q ss_pred EeCC-CeEEEEecCCCeeEEeeecCCceeEEEE-ecCCCEEEE--EeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEc
Q 014104 128 GVGD-KVMRLWSLEGYKCVEEYSLPNAASLVDF-DFDESKIVG--LIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYF 202 (430)
Q Consensus 128 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~ 202 (430)
++.| .++.+||+.+|.....+++......-+. .-.+.++++ .....+.+|.+....... .......+..+...+.
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 3444 4699999999999988887522221111 123456663 334578999988765433 2222222333444444
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCC---------CCceeEEEec
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLS---------SDQRVATLRS 272 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~ 272 (430)
+..++.|+..|.+++|.+.+|..+..+..|-.+|+++.|+. +.+|++|+.||.|.+|++. +-++++.+..
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 55577777999999999999999999999999999999995 4899999999999999864 3456677776
Q ss_pred CCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 273 TDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
|.-+|+.+...+.| .+|++++.|.++++||+..+..+.++.. ...+.+++ .+|-+..++.|+.+|.|.+.++..-
T Consensus 173 -HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~-lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 173 -HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVA-LDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred -CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEE-EcccccEEEecCCcceEEeeehhcC
Confidence 88899999988653 5899999999999999999998887664 47889998 9999999999999999999887632
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC--CeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP--PITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.... .++..-.+..+++ -.....+|.+ .|+|+++ ||..|++|+.||.|+|||+.+.
T Consensus 250 ~~~~------~~v~~k~~~~~~t--------------~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 250 SGQS------AGVNQKGRHEENT--------------QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred Cccc------ccccccccccccc--------------eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 2100 0000000111111 1112245666 8999888 7999999999999999998754
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=189.40 Aligned_cols=243 Identities=12% Similarity=0.151 Sum_probs=200.8
Q ss_pred eEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+..|+||+..|+.+.++. . .+++++.|..|+||.............| +.+..+..+|.|.|++ ++.|+...+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 4668899999999999954 3 8999999999999998766555444444 6678899999999999 888999999999
Q ss_pred CCCcccccCCC-Cce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 180 NGLRSVFPSRE-GTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 180 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+++..+..... ... .....+.+++-.+.+|..||.|++||+.++..+..|.+|.++|..++|+.+ -+++++++|+.
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 99886543322 221 233445555555899999999999999999999999999999999999955 78999999999
Q ss_pred EEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC--CCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 256 IAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR--TMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 256 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
|++||++..+...++......++.++.|++.|.+|+.++.|=+|++++-. +..++.++..|.+..+++. |....+++
T Consensus 413 V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~-Fg~~aq~l 491 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR-FGEHAQYL 491 (506)
T ss_pred EEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceee-ecccceEE
Confidence 99999999888888876455579999999999999999888777777643 4566777888888888888 98899999
Q ss_pred EEEcCCCeEEEEEc
Q 014104 334 VVGGIDGVLRVLDQ 347 (430)
Q Consensus 334 ~s~~~dg~i~vwd~ 347 (430)
+++|.|..++++.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 99999999888754
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=199.69 Aligned_cols=340 Identities=15% Similarity=0.160 Sum_probs=222.6
Q ss_pred HHHHHHcccchhhcccCCE---------------eEEEEeccccceeEEEecC-C-eEEEEeC--CCeEEEEecCCCeeE
Q 014104 85 HLEELAMKHHRFALEEGRI---------------DIDQWKAHSVGVDQCRMKR-G-LILTGVG--DKVMRLWSLEGYKCV 145 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~---------------~~~~l~~h~~~v~~~~~~~-~-~l~s~~~--dg~i~iwd~~~~~~~ 145 (430)
-+..++|+++++.+..|.. .+.+|..|.-.|+|++|++ + |+++.+. |-.|.+||....-..
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~ 159 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG 159 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc
Confidence 4567889999998888772 3456677888999999954 4 8887665 446677876543333
Q ss_pred EeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc-----------------------------------------
Q 014104 146 EEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS----------------------------------------- 184 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----------------------------------------- 184 (430)
..-+....+..++|+.|+.+++.+...+|++|.++.++.
T Consensus 160 asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~ 239 (1080)
T KOG1408|consen 160 ASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA 239 (1080)
T ss_pred cccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec
Confidence 333333445556666666666655556666665543210
Q ss_pred -----------------------------------------------------ccc-----------------------C
Q 014104 185 -----------------------------------------------------VFP-----------------------S 188 (430)
Q Consensus 185 -----------------------------------------------------~~~-----------------------~ 188 (430)
.-. .
T Consensus 240 qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~ 319 (1080)
T KOG1408|consen 240 QGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSES 319 (1080)
T ss_pred ccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccccc
Confidence 000 0
Q ss_pred CCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeee---EEeecCCCCeEEEEecC------------CCEEEEEe
Q 014104 189 REGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCS---QIIRMHCAPVTSLSLSE------------DQLIISGS 251 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~~~------------~~~l~~~~ 251 (430)
........+++.++.. .+.+...|..++|||++.-+.+ ..+-.|...|+.+..-| ...|++++
T Consensus 320 ~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred CcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 0001111233333322 2666677888888888764332 33445777777775533 34799999
Q ss_pred CCCeEEEEeCCCCceeEEEe----c--------------------------------CCCCCeEEEEEecCCCEEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLR----S--------------------------------TDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~----~--------------------------------~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.|++|++||+..+..-..+. . .....+.+++++|+|++|++|..
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR 479 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence 99999999987522111100 0 01237999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCceEEEEEeeC---CCCeEEEEcCCCeEEEEEcCC-CceEEEEEeccCcceeeecc--
Q 014104 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQN---DTSTLVVGGIDGVLRVLDQNT-GEVLSRCVMDIGSASSSSNK-- 369 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~---~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s-- 369 (430)
-|.+++|++.+.+....++.|...|.++. |+. ..++|++++.|..|+|||+.. ..+++++..|...++.+-+.
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLe-yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEAHESEILCLE-YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred cCceEEEEehhhhhhhheecccceeEEEe-ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence 99999999999998889999999999999 653 246899999999999999964 45678888887776544433
Q ss_pred ----------CCceEEEeecccccCCcccccCCCCC----CCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCc
Q 014104 370 ----------VSGVIERNEGRRLSAGCCIDRIPKTI----RPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ----------~d~~v~~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.|..+.....+.-.. -..++.+| ...+..++.| .+++++++.|..|+||++++|++
T Consensus 559 gln~~MiscGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred CCceEEEeccCchhhheehhccccC---ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 333332111111111 11122222 1457778885 67899999999999999999875
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=200.84 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=185.9
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCcc--------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEe
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLRS--------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQII 229 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~ 229 (430)
|.+++|+ ++.||.|++|++..-.. .++.|... +..+..+..+..+++++.|-+|++|+...+ -+..++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW-VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW-VNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH-HhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 3566677 99999999999875332 12222222 122344556667999999999999999877 578889
Q ss_pred ecCCCCeEEEEe-cCC-CEEEEEeCCCeEEEEeCCCC--ceeEEE--------ecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 230 RMHCAPVTSLSL-SED-QLIISGSSLGSIAISGLSSD--QRVATL--------RSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 230 ~~~~~~i~~~~~-~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
..|.+-|.|+++ .++ .++++|+-|+.|.+||+.++ +.+..+ ..++..+|++++.++.|..+++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 999999999999 454 79999999999999999987 333332 213566899999999999999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe
Q 014104 298 YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~ 377 (430)
.+++||.++.+.+..+++|...|..+. .++||..++++|.||+|++||+...+++.++..|..
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e---------------- 256 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE---------------- 256 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCCCceEEeeeccccceeeeEEeccC----------------
Confidence 999999999999999999999999999 999999999999999999999999999999988666
Q ss_pred ecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|+++..+ =.++.+|+.||.|..=|+.+
T Consensus 257 --------------------~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 257 --------------------GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred --------------------ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 56776664 34588999999888777765
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.5e-24 Score=191.28 Aligned_cols=303 Identities=13% Similarity=0.133 Sum_probs=225.3
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCE--EEEEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~i~vwd~ 179 (430)
+...+.||++.|.|+.. +.| +|++|+.||+|+||.+.+|++++++...+.+.+++|+|.++. |+++.+..+.+.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34578999999999998 455 999999999999999999999999999999999999998775 34666666777665
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEE----EecCCeEEEEECCCCe----eeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVV----GCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.-+..+........ +++ ...++.+..|.-...+ -++..-.|...|..+.|+ .+++|++.
T Consensus 472 ~~G~~~e~~~t~el------------l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 472 IFGDRLEVGPTKEL------------LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred cccchhhhcchhhh------------hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 54422211111110 111 1345677888654221 134444588999999999 56888887
Q ss_pred eC---CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 251 SS---LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 251 ~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
.. ...|.|.++........|.. ..+.|.++.|+|...+|++++.. .|+|||+..++.+..+......|.+++ .+
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~ms-ih 616 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMS-IH 616 (733)
T ss_pred ccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeee-ec
Confidence 54 35799999987776666654 56689999999999999998765 599999999888888887778999999 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEecc----------CcceeeeccCCceEEEeeccccc---CCccc--ccC
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDI----------GSASSSSNKVSGVIERNEGRRLS---AGCCI--DRI 391 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----------~~~~~~~~s~d~~v~~~~~~~~~---~~~~~--~~~ 391 (430)
|.|..|+.|+.|+.+..||+.-. ++.+++..|. .--.++++|.||.+.++-+.... .+..+ ...
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 99999999999999999999844 4445554444 44477899999998766544322 22222 122
Q ss_pred CCCCCCC----eeEEEEc--CeEEEEeeCCCeEEEE
Q 014104 392 PKTIRPP----ITCLAVG--MKKVVTTHNSKYIRLW 421 (430)
Q Consensus 392 ~~~h~~~----v~~v~~~--~~~l~t~~~Dg~v~vw 421 (430)
..+|... |..+.|+ ..+|+|+|.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 3455544 7777786 5679999999999998
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=184.44 Aligned_cols=220 Identities=14% Similarity=0.249 Sum_probs=172.7
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
+...+.+.+|++||..++ |+.|..|++.|++.....- ... .+..+..+ .....+++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~-------------em~~~~~q--------a~hPvIRT 167 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPK-------------EMISGDTQ--------ARHPVIRT 167 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chh-------------hhccCCcc--------cCCceEee
Confidence 345677788999999988 8888888888876421100 000 01111111 01246788
Q ss_pred eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+-.|..+|+++.|+|. ..|++|+.|++|++||+...... +.|. ...+|.++.|+|.|.+|++|..--++++||+
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 8889999999999986 89999999999999999764433 2333 3458999999999999999999999999999
Q ss_pred CCCceeee---eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 305 RTMKSLWE---TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 305 ~~~~~~~~---~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
.+.++... -..|.+.|+++. +++.+++-++++.||.|++||--+++++.++...++
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~-Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-------------------- 304 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVR-YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-------------------- 304 (430)
T ss_pred cceeEeeecCcccccccceeEEE-ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--------------------
Confidence 99887654 346889999999 999999999999999999999999999988874332
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
...|.+..| +++|+++.|.|..|++|.+.+|..+
T Consensus 305 --------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 305 --------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred --------------CceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 247888888 7999999999999999999988643
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-24 Score=194.89 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=195.2
Q ss_pred EEEEeccccceeE-EEec--C-CeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 105 IDQWKAHSVGVDQ-CRMK--R-GLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~v~~-~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
...+.+|.+-|.+ +++. + +.+++|+.|.+|.+|...+..++.++.+|. .+.+++...++..+-++-|.++++|..
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence 3567888888887 8873 3 489999999999999999999999999884 455566666777444999999999998
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
..-...+..|+.. +.++...+.. +++|+.|.+|++|. .++.++++.+|++.|+.+++-++..|++++.||.|+.
T Consensus 130 ~~l~~~l~gH~as---VWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 130 GELVYSLQGHTAS---VWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred hhhhcccCCcchh---eeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEE
Confidence 7766555555544 3455555444 99999999999998 4889999999999999999999988999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|++ +|.++..+.+ |..-|+++...+++..++++++|++++||+.. ++.+.+......|+++. +-++|. +++|++
T Consensus 205 w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~-~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK-VLLNGD-IVVGGS 278 (745)
T ss_pred Eec-cCceeeeeec-cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE-EeeCCC-EEEecc
Confidence 998 7899999988 88999999988888999999999999999977 67777776666899998 556666 788899
Q ss_pred CCeEEEEEcC
Q 014104 339 DGVLRVLDQN 348 (430)
Q Consensus 339 dg~i~vwd~~ 348 (430)
||.||||..+
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999876
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.1e-23 Score=171.39 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=184.5
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
+.+..+.|++.++.|+ ++.||.+++||+...+.......++. .++.++.+. .+++|+.||.|+.+|+.+++.. .+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~p--lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAP--LLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCc--eeeeeccCCceEEEeccCceEEEEEecCCcce-ee
Confidence 5677799998877776 89999999999998865444333333 244444333 4999999999999999888765 44
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
..|..+|.|+.+++. +.+++|+.|++|++||.+.......+. ....|.++.. .|+.|++|+.+..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 569999999999965 899999999999999999877777776 3448988877 67899999999999999999876
Q ss_pred eeeeeec--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----ceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 309 SLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG----EVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 309 ~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.....+. -.-.+.+++ +-|++.=.++++-||.|.+=.++.. +.-..|+.|... .++.-
T Consensus 167 ~~~q~reS~lkyqtR~v~-~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~-------~~~~~-------- 230 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVA-LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS-------EKDTE-------- 230 (323)
T ss_pred chhhhccccceeEEEEEE-EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc-------cCCce--------
Confidence 5443222 235688888 5567777888999999987666544 445566666551 11110
Q ss_pred cCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
--.+|++++|+ .+.|+|||.||.|.+||+.+.+++
T Consensus 231 ------------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 231 ------------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ------------EEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 01389999997 456999999999999999887765
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=186.52 Aligned_cols=215 Identities=21% Similarity=0.251 Sum_probs=180.2
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
.++|.|++- ++| +|+.|+..|.+++|.+.+|+.+..+..| ..+.++.|+-|+.+++ ++.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 467889877 667 6666669999999999999999988777 6778899999988877 77788888877533
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~ 264 (430)
++.+..++ +.++++.+..|+-+|+++...++ ..++++|.|.++++||+..+
T Consensus 155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 34444443 45778889999999999999864 68999999999999999999
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------ceeeeeecCCC--ceEEEEEe
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----------------KSLWETRISPN--VVYSLQHL 326 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v~~l~~~ 326 (430)
..+.++. ....+.+++.+|.++.+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++ +
T Consensus 209 ~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-i 285 (476)
T KOG0646|consen 209 VLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-I 285 (476)
T ss_pred eeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-E
Confidence 9998887 6779999999999999999999999999887432 23456778887 999999 9
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+.||..|++|+.||.|+|||+.+.++++++....+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 99999999999999999999999999888874333
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=7.1e-22 Score=172.46 Aligned_cols=275 Identities=14% Similarity=0.087 Sum_probs=215.1
Q ss_pred EEEEeccc-cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 105 IDQWKAHS-VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 105 ~~~l~~h~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
...|+++. ..|.|++| ++|-++||..+|.|.||+..+.+..+....| +++..+++..+|..|-++.|..|..||-+-
T Consensus 238 ~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNY 317 (626)
T ss_pred eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccc
Confidence 33455553 57899999 5679999999999999999888777665554 677889999999988899999999999433
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.+..-...+.....+-.+....+.+++|...+.|..=.++++-.+ ...+|....+.++.+|. +++++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 222222222333344556667777999988888877777665443 45579999999999987 8999999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..+++.+.. ...+..|+.|+|.| .+|.|...|...+.|.++...+..-.. ..+++.+. |+|+|.+||.|+.|+
T Consensus 397 --~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~-ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 397 --DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVR-YSPDGAFLAVGSHDN 469 (626)
T ss_pred --CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEE-EcCCCCEEEEecCCC
Confidence 456666555 45689999999999 999999999999999998666654444 78899998 999999999999999
Q ss_pred eEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCe
Q 014104 341 VLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKY 417 (430)
Q Consensus 341 ~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~ 417 (430)
.|++|-+... ........ .|.++|+.+.| |++++.+-+.|-.
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k-----------------------------------~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGK-----------------------------------CSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eEEEEEECCCCcEEEEeee-----------------------------------ecCceeEEeeecCCCceEEeccCceE
Confidence 9999998754 33333322 22368899998 6899999999999
Q ss_pred EEEEE
Q 014104 418 IRLWK 422 (430)
Q Consensus 418 v~vw~ 422 (430)
|..|.
T Consensus 515 iLyW~ 519 (626)
T KOG2106|consen 515 ILYWK 519 (626)
T ss_pred EEEEc
Confidence 99994
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.4e-23 Score=168.96 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=182.8
Q ss_pred CceeEEEEecCCC-EEE-EEeCCeEEEEEcCCC-ccc---ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee
Q 014104 152 NAASLVDFDFDES-KIV-GLIGTRICIWRRNGL-RSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 225 (430)
+.+..++|+|... .++ ++-|++|++|+++.. ... ...+.+. +-.++|..++..+++|+.|+.+++||+.+++.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P-vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP-VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC-eEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 5677899999544 443 788999999999873 322 2333333 33466777777799999999999999999954
Q ss_pred eEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 014104 226 SQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCW 302 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 302 (430)
..+..|.++|.++.|-++ ..|++||.|.+|+.||.+...++.++. ....++++.. -...++++..++.|.+|
T Consensus 107 -~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 107 -SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhc--cCceeEEEecCCcEEEE
Confidence 567779999999999854 589999999999999999999999988 5667888776 44688889999999999
Q ss_pred eCCCCceee-eeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcceeeeccCCceEEEee
Q 014104 303 DLRTMKSLW-ETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 303 d~~~~~~~~-~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
+++++.... .... -.-.+.+++ .-.+....+.|+-+|.+-+..+..+ +.-.+|+.|...-. .++.|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va-~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-----~~~~V---- 251 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVA-CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-----VNDDV---- 251 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEE-EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-----CCCce----
Confidence 998754322 1111 124577888 4466666789999999999999876 44556666654110 11111
Q ss_pred cccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..|++|+|+ ...|+|+|.||+..+||-+...+|
T Consensus 252 ------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 252 ------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ------------------EEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 368889996 566999999999999997765444
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-23 Score=191.08 Aligned_cols=239 Identities=16% Similarity=0.187 Sum_probs=193.8
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
.+|+..-+.+++ ++| +|++++.||.|++|+.... +.-.++.. .+..+.++......++ ++.++.|.+|.+..++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 478999999999 566 9999999999999987665 33333332 3455566666666777 89999999999988763
Q ss_pred c-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 185 V-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
- ......-....+++...+..++.|+.|-.|++.++.+......+++|.++|.++.|+|+ ++||+.+-||.|++||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 2 22222233456777878888999999999999999999999999999999999999976 899999999999999999
Q ss_pred CCceeEEEecC-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCCCCeE
Q 014104 263 SDQRVATLRST-------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 263 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~~~~l 333 (430)
++.+..++.+- ....+..++|+|+|..|+....|+.|++|+..+.+....+.. +...+..+. |+|+|+||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~-wsPnG~Yi 247 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ-WSPNGKYI 247 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE-EcCCCcEE
Confidence 98887666541 123567899999988888888999999999999888777653 334477777 99999999
Q ss_pred EEEcCCCeEEEEEcCC
Q 014104 334 VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~ 349 (430)
|+++.||.|.|||+++
T Consensus 248 AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccCCcEEEEeccc
Confidence 9999999999999986
No 114
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-24 Score=198.28 Aligned_cols=204 Identities=16% Similarity=0.288 Sum_probs=175.6
Q ss_pred EeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEec-CCCEEE-EEeCCeEEEEEc
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~ 179 (430)
.++..|.||.+.|..+.|+.+ +|+|+|+|.+||+|++...++++.|.+.+-+++++|+| |.++++ |+-|+.++||++
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 367889999999999999755 99999999999999999999999999999999999999 667777 999999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--C------CCCeEEEEecCC--CEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--H------CAPVTSLSLSED--QLIIS 249 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~------~~~i~~~~~~~~--~~l~~ 249 (430)
...+.+.-..-...++.+|+.++|+..++|+.+|.+++|+....+....... | ...|+.+.|.|+ +.+++
T Consensus 440 ~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 440 SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 9988665555556778899999999999999999999999987766544321 1 237999999976 45788
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
.+.|..|+|+|.++..++.+|++.+.. .-....|+.||++|++++.|..|++|+...
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 899999999999999999999875543 345678999999999999999999999854
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=179.74 Aligned_cols=223 Identities=22% Similarity=0.322 Sum_probs=183.5
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
++|.+.|.+++. +|| ||++|+.|..|.||+..+.+.++.+.+| +.+..++|-.....++ ++.|+.+++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 489999999999 567 9999999999999999999999999987 5667799988777777 99999999999987663
Q ss_pred --cccCCCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 185 --VFPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
.+..|+..+ ..+...+.. +-+|+.|+++++|++. .+....+.++.+.+-|++|-++..+++|+.+|.|.+|+
T Consensus 279 vetlyGHqd~v---~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 279 VETLYGHQDGV---LGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHhCCccce---eeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 455555544 444444333 5566699999999993 44445778899999999999888999999999999999
Q ss_pred CCCCceeEEEecCCC-----------CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCCCceEEEEE
Q 014104 261 LSSDQRVATLRSTDC-----------TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISPNVVYSLQH 325 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~ 325 (430)
+.+.+++.+...+|. ..|++++..|..+++++|+.+|.|++|-+..+ +++..+. -.+.|++++
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~- 432 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA- 432 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE-
Confidence 999999888765442 16899999999999999999999999998876 4555555 348899998
Q ss_pred eeCCCCeEEEEc
Q 014104 326 LQNDTSTLVVGG 337 (430)
Q Consensus 326 ~s~~~~~l~s~~ 337 (430)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777664
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-23 Score=166.86 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=177.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEec-C--CCEEEEEeCCCeEEEEeCCCCcee--E
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLS-E--DQLIISGSSLGSIAISGLSSDQRV--A 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~-~--~~~l~~~~~dg~i~vwd~~~~~~~--~ 268 (430)
..+.+.+..|++++.|++|+|+..+.+ +.+.++.+|.+||+.++|. | +.+|++++.||.|.+|.-.+++-. .
T Consensus 17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 345567778999999999999998764 4678999999999999998 5 489999999999999998877542 2
Q ss_pred EEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCC---ceeeeeecCCCceEEEEEeeCC---C----------
Q 014104 269 TLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTM---KSLWETRISPNVVYSLQHLQND---T---------- 330 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~s~~---~---------- 330 (430)
.... |...|++++|.|.+ -.|++++.||.|.+.+.+.. ........|.-.|+++. +.|. |
T Consensus 97 e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-wapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 97 EHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-WAPASAPGSLVDQGPAAK 174 (299)
T ss_pred hhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-ecCcCCCccccccCcccc
Confidence 3333 78899999999864 58899999999999998764 22234567888899998 7665 4
Q ss_pred -CeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcc--------------eeeeccCCceEEEeecccccCCcccccCCC
Q 014104 331 -STLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSA--------------SSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 331 -~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~--------------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
+.|++|+.|+.|+||+..++ +..+++..|.+-+ +++++|.||++.+|+...-....+ ..+..
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~tll~ 253 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KTLLE 253 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-ccccc
Confidence 57999999999999999876 3345577776533 789999999999988762222211 12222
Q ss_pred CCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 394 TIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 394 ~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.....+..++| .|+.|+.++.|+.|.+|.-+.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 34568999998 599999999999999998654
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-22 Score=178.75 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=194.7
Q ss_pred EEeccccceeEEEec--CCeEEEEeCCCeEEEEecCCCe-eEEeeecC--CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYK-CVEEYSLP--NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
-+.--..+|.+++|+ ++.||.+-.||.|.+|++..+= +...+.++ ..+..++|++.++.+-.+.+|.|.-||+.+
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence 344567899999995 3499999999999999998753 34455554 446679999655555599999999999999
Q ss_pred Ccccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 182 LRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 182 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
.++.. ....+.....++..+.+..+++|+.||.+..++...++... .+...++.|.+++|+|+ ..+++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 88654 33455566777888888889999999988888887776543 34456789999999987 4599999999999
Q ss_pred EEeCCCCceeEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
+||..+++.++.... ....-|.++.|-.++ .+++|..-|+|.+||...+.++..+..|.+.|.+++ ..+++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA-VADNE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE-EcCCC
Confidence 999999988773221 012257777777554 689999999999999999999999999999999999 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCce
Q 014104 331 STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.++++++.|+.|..|...+...
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999888775543
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-22 Score=166.15 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=194.2
Q ss_pred EEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCe------eE----Eee--ec---C-CceeEEEEec-CCCEE
Q 014104 107 QWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYK------CV----EEY--SL---P-NAASLVDFDF-DESKI 166 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~------~~----~~~--~~---~-~~~~~~~~~~-~~~~l 166 (430)
....|.+.|+++.+. .| ++++|+.||.|.+||++... .+ ..+ .+ | -.+..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 345688999999984 34 99999999999999997532 11 101 11 1 1234456666 44445
Q ss_pred E-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC---CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 167 V-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD---PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 167 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
. ++.|.++++||.++.+......-...+...++++.. -.+++|..+-.|++-|+.+|.+-+++.+|.+.|.++.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 5 888999999999998754332222222333344332 237888889999999999999999999999999999999
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCC-ceeEEEe-------------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 243 ED--QLIISGSSLGSIAISGLSSD-QRVATLR-------------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 243 ~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
|. -.+++|+.||.|++||++.. .+...+. ..|.+.|..++|+.++.++++.+.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 86 47889999999999999864 3333332 23566899999999999999999999999999987
Q ss_pred Cceeeeee---cCCCce-EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 307 MKSLWETR---ISPNVV-YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 307 ~~~~~~~~---~~~~~v-~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
|+....-. .|...+ ..+..-+.+...++---.++.+.++++-+|..++.+..|..
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--------------------- 336 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--------------------- 336 (397)
T ss_pred CcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc---------------------
Confidence 75321110 111000 00000122333344344568888999888888888876533
Q ss_pred cCCcccccCCCCCCCCeeEEEEcCe--EEEEeeCCCeEEEEEec
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVGMK--KVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~~~--~l~t~~~Dg~v~vw~~~ 424 (430)
.|.|.++.++ ...+|+.|+.|..|-..
T Consensus 337 ---------------~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 337 ---------------RINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ---------------eeeEEeecCchhhhhccccCCcccccccc
Confidence 5666666433 37788888888888653
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=191.70 Aligned_cols=269 Identities=17% Similarity=0.215 Sum_probs=197.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc------ccCCCCceeee--eEEE-EcCCceEEEecCCeEEEEECCC
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV------FPSREGTFMKG--LCMR-YFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~------~~~~~~~~~~~--~~~~-~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
.....++..++-..++......+.+|.++..... +.........+ +.|. ...+.|++++.+|.|.+||+..
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3455566677777777666667777776543211 11111111111 1121 2344499999999999999976
Q ss_pred ---CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCEEEEEeCC
Q 014104 223 ---RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRLVFAGTTA 296 (430)
Q Consensus 223 ---~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 296 (430)
.+.+..+..|...+++++|++- ++|++|+.||+|++||++..+...++.+ ....|+.|.|+|. +..++++...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCC
Confidence 5566788899999999999953 7999999999999999999999888887 6779999999984 6788999999
Q ss_pred CeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-----------EEEEEeccCcc-
Q 014104 297 GYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-----------LSRCVMDIGSA- 363 (430)
Q Consensus 297 g~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~- 363 (430)
|.+.+||++. .++...+..|.++|.++. |+|++.+|||||.|++|+|||..+++. +..++..+...
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~n-whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLN-WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEe-ecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 9999999986 456778899999999999 999999999999999999999985432 22222223222
Q ss_pred eeeecc--CCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecC
Q 014104 364 SSSSNK--VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 364 ~~~~~s--~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+++.+ .|-.|.+|++..-.- .......|++.++.++|+ ...+.+++.||+|..-.+++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYI---P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYI---PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred hhhhhhccccceEEEEeeccccc---cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 233332 455677777765321 223346799999999994 46689999999886554443
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.5e-25 Score=199.05 Aligned_cols=228 Identities=23% Similarity=0.283 Sum_probs=198.2
Q ss_pred EEEeccccceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCC
Q 014104 106 DQWKAHSVGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 182 (430)
+.+-.|...|.|+.. . ...+++|+.|..+.+|.+..-..+..+.+| ..+.++.|+++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E------------------- 82 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE------------------- 82 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-------------------
Confidence 356678999999887 3 338999999999999998776666566655 334444444332
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
..|++|+.+|+|++||++.++.++++.+|...+.++.|+|- .++++|+.|+.+++||+
T Consensus 83 ---------------------~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 83 ---------------------RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred ---------------------hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 22788999999999999999999999999999999999986 78899999999999999
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
+...+.+.+.+ |...|..+.|+|+|++++.|+.|..++|||...|+.+.+|..|.+.+.++. |+|..-++++|+.|++
T Consensus 142 Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRT 219 (825)
T ss_pred hccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCce
Confidence 98889999998 888999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
|++||+++.+.+........++....+.+|+...
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 9999999988888888777888888888888764
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=186.31 Aligned_cols=240 Identities=16% Similarity=0.195 Sum_probs=197.4
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
+..+...+++.++|+.|+ ++.||.|++|+.................+.++...+..+++|+.+++|.+|.+.+++.-..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccce
Confidence 335667799999999988 8899999999987653211111113344577777788899999999999999998887666
Q ss_pred eecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 229 IRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 229 ~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
+...+-++++++++ .+++++.|++|-.|++-+.........+++ |.++|.++.|+|++++||+.+.||.|++||+.++
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66677899999999 458999999999999999999999999998 9999999999999999999999999999999998
Q ss_pred ceeeeeecC--------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeec
Q 014104 308 KSLWETRIS--------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEG 379 (430)
Q Consensus 308 ~~~~~~~~~--------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~ 379 (430)
.+...+.+- ...+..++ |+|+|..++..+.|+.|++|+..+.+....+...
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~a-W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-------------------- 229 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLA-WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-------------------- 229 (933)
T ss_pred hhhhhcccCCccccccccceeeeee-ecCCCCeEEeeccCCeEEEEccCCceeheeeccc--------------------
Confidence 776655432 23344555 9999888988999999999999998888877652
Q ss_pred ccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 380 RRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...+.+++| +|+|||+++.||.|.|||+++
T Consensus 230 --------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 --------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 23344788888 599999999999999999984
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=176.22 Aligned_cols=247 Identities=13% Similarity=0.156 Sum_probs=186.1
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
++.+|+.|.+.|..+++..+.+++++.|.+|+.|.++. ..++++.+.....-+.-+..++. .++....|.|||.+...
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~-FaTcGe~i~IWD~~R~~ 178 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSV-FATCGEQIDIWDEQRDN 178 (433)
T ss_pred hhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccccccccccccccc-ccccCceeeecccccCC
Confidence 57789999999999999889999999999999999876 57777776554444444433333 35556679999987655
Q ss_pred ccccCCCCc-eeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 184 SVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 184 ~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.+....-+. ....+.+.+.... |++++.|+.|.+||++++.+++.+. -...-+.++|+|. -.+++|++|..++.+|
T Consensus 179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehh
Confidence 432222111 1122333333333 7788899999999999999887665 2345678999986 5788999999999999
Q ss_pred CCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEcC
Q 014104 261 LSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++... ++....+ |.+.|.+++|+|.|+-+++|+.|.+|+||..+.+.....+.. .-..|.++. ||.|.+++++||.
T Consensus 258 mR~l~~p~~v~~d-hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk-~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 258 MRNLSRPLNVHKD-HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK-YSMDSKYIISGSD 335 (433)
T ss_pred hhhhcccchhhcc-cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE-EeccccEEEecCC
Confidence 98654 4555555 888999999999999999999999999999987654433221 126799999 9999999999999
Q ss_pred CCeEEEEEcCCCceEEE
Q 014104 339 DGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~ 355 (430)
|+.|++|.....+.+..
T Consensus 336 d~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 336 DGNVRLWKAKASEKLGV 352 (433)
T ss_pred CcceeeeecchhhhcCC
Confidence 99999998775544433
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=6.7e-23 Score=179.27 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=169.5
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
..+..+++.|.|..++ |+.|..|++||+.+... .+...+.|....+.++..+..|++.+.....+++|-...+
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 3456689999999999 99999999999987542 3445667778888888888888888888899999964333
Q ss_pred eeE------------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEe----cCCCCCeEEEEEec
Q 014104 225 CSQ------------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLR----STDCTGIKTLCYNP 285 (430)
Q Consensus 225 ~~~------------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~----~~~~~~v~~~~~~~ 285 (430)
... .-++|...++|.+|+|. +.|++++.||++++||+...+. ...+. +...-+++.++|+|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 222 23589999999999985 7899999999999999985432 23332 11233899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc--e-eeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEec
Q 014104 286 CSRLVFAGTTAGYASCWDLRTMK--S-LWETRISPN--VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMD 359 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~ 359 (430)
+|+++|+|+.||.|.+|+..... + ...-..|.. .|+++. ||++|++|++-+.|+++++||++.. +++....+-
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~-FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS-FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE-eccccchhhhccCCCceeeeeccccccchhhhcCC
Confidence 99999999999999999986432 1 223456765 899999 9999999999999999999999864 445544432
Q ss_pred cC--cceeeeccCCceEE
Q 014104 360 IG--SASSSSNKVSGVIE 375 (430)
Q Consensus 360 ~~--~~~~~~~s~d~~v~ 375 (430)
.. .-.-.++|+|..+.
T Consensus 407 ~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 407 PTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred CccCCCCccccCCCceEE
Confidence 22 12345666666553
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4e-21 Score=151.30 Aligned_cols=243 Identities=14% Similarity=0.217 Sum_probs=188.1
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE-----EeeecC-CceeEEEEecCC----CEEE--
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-----EEYSLP-NAASLVDFDFDE----SKIV-- 167 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~-~~~~~~~~~~~~----~~l~-- 167 (430)
....+.-+.|.+.|+|.+| +.| ++++|++|.+|++--.+...+. .++..| +.+.-++|-.+. ..|+
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 3445566789999999999 556 9999999999999765533221 234444 556778886543 3455
Q ss_pred EEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--C-----CCCeEE
Q 014104 168 GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--H-----CAPVTS 238 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~i~~ 238 (430)
+..|..|++=|-.+++ ..+..+.+++..... +.+-.+++|+.|.+|++||++-..++.++.. | .+.|.+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 4445666666666655 456677777643333 3445599999999999999998888877642 2 357899
Q ss_pred EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeee
Q 014104 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWET 313 (430)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~ 313 (430)
+++.|. .++++|-.|....+||++-++.++.+.. |...|.|+.|+|...++.+++.|..|++-|+... -++...
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 999975 8999999999999999999999999987 8889999999999999999999999999998742 223445
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..|.+.+..+. |+|..--+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~r-wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCR-WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEE-ecCccceeeeccCcceEEEeccC
Confidence 67888888888 89988889999999999999764
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.7e-21 Score=172.04 Aligned_cols=254 Identities=11% Similarity=0.073 Sum_probs=186.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICI 176 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~v 176 (430)
...++.+.+|.. +.++++ +++ .+ ++++.++.|++||..+++.+..+..+.....++++++++.++ + ..++.+.+
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 345667776654 567888 555 44 677789999999999998887777665567789999999876 3 35789999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSL 253 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~d 253 (430)
||+.+.+.+.....+.....+.+.+++..++++..++ .+.+||..+++.+..+.. ...+..++|+++ +.++ ++..+
T Consensus 100 ~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 100 IDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9998876443322222234466677777788777764 577889988877665542 334578899976 5564 44568
Q ss_pred CeEEEEeCCCCceeEEEecCC------CCCeEEEEEecCCCEEEE-EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 254 GSIAISGLSSDQRVATLRSTD------CTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
+.|++||+++++.+..+.... ......++|+|+++++++ .+.++.+.+||+++++.+..+. +...+.++. |
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~-~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLA-F 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEE-E
Confidence 999999999998877664211 113456889999998654 3456789999999888776553 345788998 9
Q ss_pred eCCCCeEEEE-cCCCeEEEEEcCCCceEEEEEec
Q 014104 327 QNDTSTLVVG-GIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 327 s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+|+|++|+++ +.+|.|++||+.+++++.++..+
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 9999999886 46899999999999999999764
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.9e-23 Score=177.72 Aligned_cols=262 Identities=15% Similarity=0.230 Sum_probs=201.0
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCc---ccccCCCCceeeeeEE
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV--GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCM 199 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~~ 199 (430)
++...++++||....+....+..+ .++..+.|+.....++ .+.|..+++|.-.+.. .......+....++..
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 333447999998876655555432 4455566666665444 4557788899877652 2333334443334444
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
..++-++++|+..+.|+|||++...+.+.+++|+..|+++.++ .+.+|++++..|.|.+..+.++.....|.......|
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 4455669999999999999999777888899999999999999 568999999999999999999988888875444567
Q ss_pred EEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 279 KTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 279 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
.-+.|+|..+++ .+++.+|.|.+||+....++.. .+.|..+...++ |+|.. .+|++.+.|..|.+||..+.+....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic-fspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC-FSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce-ecCCccceEEEecccceEEEeecccccccce
Confidence 799999987754 5889999999999998877765 457888999998 87765 4778999999999999997776666
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+.. ..+.++|+| +|.+|+.|...|.|..||+...+
T Consensus 247 l~y-------------------------------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 247 LTY-------------------------------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eee-------------------------------------cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 653 236778888 58889999999999999987654
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2e-22 Score=191.34 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=188.0
Q ss_pred CCCCceeeeeEEEEcCCceEEEe--cCCeEEEEECCC------------CeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGC--EDGTARVFDMYS------------RKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.|.+.....+.+.+++..+++|+ .||.+.+|+.+. .+.+..+..|.+.|+|+.|+++ .+||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34444344455556666699999 899999998652 2345567789999999999976 89999999
Q ss_pred CCeEEEEeCCC------------------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 253 LGSIAISGLSS------------------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 253 dg~i~vwd~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
|+.|.+|+... -+.+..+.+ |...|..++|+|++.+|++++.|++|.+||.++.+.+..++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 99999999762 124566777 89999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc------eeeeccCCceEEEee-----c----
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA------SSSSNKVSGVIERNE-----G---- 379 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~s~d~~v~~~~-----~---- 379 (430)
+|.+.|-++. |.|-|+|+++-+.|++|+||++.+....+.+..+.+.. +=.++||||...... +
T Consensus 169 ~H~s~VKGvs-~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVS-WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceE-ECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 9999999999 99999999999999999999988777777776654422 446889999763110 0
Q ss_pred cccc-CCcccccCCCCCCCCeeEEEEc-------Ce------------EEEEeeCCCeEEEEEecCCCcCC
Q 014104 380 RRLS-AGCCIDRIPKTIRPPITCLAVG-------MK------------KVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 380 ~~~~-~~~~~~~~~~~h~~~v~~v~~~-------~~------------~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
.-+. .........-+|..+++++.|+ .. .+|+||.|++|.||.....++++
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 0000 0112223346899999999993 12 57899999999999988777654
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=185.00 Aligned_cols=270 Identities=14% Similarity=0.187 Sum_probs=183.0
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe--eecC-CceeEEEEecCCCEEE--EEeCCeEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--YSLP-NAASLVDFDFDESKIV--GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~--~~~~~~i~vw 177 (430)
++....|.+.|..+.+ +.. .|++++.|.++++||+++.++... +.+| ..+..++|.+.+..++ |+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 4566789999999999 533 999999999999999999888766 5555 5677789998665544 7888888888
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe---EEEEECCCCeeeEEeecCC----CCeEEEEecCCCEEEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT---ARVFDMYSRKCSQIIRMHC----APVTSLSLSEDQLIISG 250 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~l~~~ 250 (430)
|+.-...-....... -+++...+. .+.- .+.+..-+.+. +.|+.+.|-++..|+++
T Consensus 173 D~R~n~~d~~e~~~~-------------~~~~~~n~~ptpskp~----~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa 235 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDN-------------RIYGRHNTAPTPSKPL----KKRIRKWKAASNTIFSSVTVVLFKDESTLASA 235 (720)
T ss_pred EEeccchhhHHHHhh-------------hhhccccCCCCCCchh----hccccccccccCceeeeeEEEEEeccceeeec
Confidence 876433100000000 011111110 0000 01111222232 23666777666889998
Q ss_pred eC-CCeEEEEeCCCCceeEEEec-------CC---CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCC
Q 014104 251 SS-LGSIAISGLSSDQRVATLRS-------TD---CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISP 317 (430)
Q Consensus 251 ~~-dg~i~vwd~~~~~~~~~~~~-------~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~ 317 (430)
+. |+.|+|||+++......... .+ ...+.++..+..|.+|++.+.|+.|++|++... .++..+.++.
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 87 99999999997665433211 01 236888888888999999999999999999863 3455555553
Q ss_pred C-ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 318 N-VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 318 ~-~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
. ..+--...+|++.++++|+.|...++|.+.+.+.--.+ ..+|.
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~-----------------------------------l~Ght 360 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL-----------------------------------LLGHT 360 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh-----------------------------------hhCcc
Confidence 2 22222237899999999999999999999865432111 24567
Q ss_pred CCeeEEEE---cCeEEEEeeCCCeEEEEEecCC
Q 014104 397 PPITCLAV---GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 397 ~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
-.|++++| +-.-++|+++|.+++||++..+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 79999999 3455888899999999999654
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.2e-23 Score=181.77 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=193.3
Q ss_pred eecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-----c-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 148 YSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-----F-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
+.+.+-+..+.++...+.++.+..|.|+|||+...... + ....+.....+-+.+++..|++|++-.++.|||+.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 33334455588888889999999999999999865321 1 12234445556667778889999999999999998
Q ss_pred CCeeeE--EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 222 SRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 222 ~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
....-. .+....-...+++.+|+ +..+++..||.|.|||+.+...++.|.+ |...+.|+.++++|..|.+|+-|.+
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCceeecCCCccc
Confidence 665432 23322345678888988 7888899999999999999999999998 8889999999999999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
|+.||+++++.+....- .+.|+++. +.|++.+|+.|-.++.+-|-... +...+.+..
T Consensus 575 vRcWDlregrqlqqhdF-~SQIfSLg-~cP~~dWlavGMens~vevlh~s-kp~kyqlhl-------------------- 631 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDF-SSQIFSLG-YCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHL-------------------- 631 (705)
T ss_pred eeehhhhhhhhhhhhhh-hhhheecc-cCCCccceeeecccCcEEEEecC-Cccceeecc--------------------
Confidence 99999999887765442 37899998 99999999999999988887765 333333332
Q ss_pred cccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
|.+.|.++.| .|+++++.|.|+.+..|....|..++
T Consensus 632 ----------------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 632 ----------------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ----------------cccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 5568999999 59999999999999999998887653
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-21 Score=160.91 Aligned_cols=262 Identities=12% Similarity=0.162 Sum_probs=175.0
Q ss_pred eccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC----eeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY----KCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 109 ~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+|.+-|.++.|+ -| .+|||+.|++|+|||.... .+....+.|++ +..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-------------------- 69 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-------------------- 69 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC--------------------
Confidence 4799999999994 45 9999999999999996542 23333333321 11122211
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---------eeeEEeecCCCCeEEEEecCC---CEEEE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---------KCSQIIRMHCAPVTSLSLSED---QLIIS 249 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~~~~---~~l~~ 249 (430)
..+|+.+++++.|+++.||.-... ....++....+.|+++.|.|. -.+++
T Consensus 70 ------------------PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 70 ------------------PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred ------------------ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 114555889999999999974211 133456667789999999984 57999
Q ss_pred EeCCCeEEEEeCCCCcee------EEEe------cCCCCCeEEEEEecCC---CEEEEEeCC-----CeEEEEeCCCC--
Q 014104 250 GSSLGSIAISGLSSDQRV------ATLR------STDCTGIKTLCYNPCS---RLVFAGTTA-----GYASCWDLRTM-- 307 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~------~~~~------~~~~~~v~~~~~~~~~---~~l~~~~~d-----g~i~i~d~~~~-- 307 (430)
++.||.++||+.-..-.+ ..+. +.+..+-.|+.|+|.. .+|+.|+.+ +.++||....+
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 999999999987543222 1111 2244577899999753 578888766 46888876542
Q ss_pred --ceeeeeecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 308 --KSLWETRISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 308 --~~~~~~~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
..+.++.+|.++|+.++ |.|+- ..|++++.|| |+||++..... .+.. .+ ..+...-+.+.+
T Consensus 212 Kw~kva~L~d~~dpI~di~-wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~-ee---~~~~~~~~~l~v----- 278 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDIS-WAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEE-EE---VLAPDLMTDLPV----- 278 (361)
T ss_pred eeeeehhcCCCCCcceeee-eccccCCceeeEEEeecCc-EEEEEEeeccc--hhhh-hc---ccCCCCccccce-----
Confidence 34567889999999999 88863 4889999999 99999873211 0100 00 000000001111
Q ss_pred ccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
........|++.|+.+.|+ |..|++.|+||.||+|+....
T Consensus 279 -----~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 279 -----EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred -----EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 1112236799999999996 999999999999999986543
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.7e-22 Score=165.04 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=164.8
Q ss_pred CCceEEEecCCeEEEEECCCCe------------ee---EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCc
Q 014104 203 DPEAVVGCEDGTARVFDMYSRK------------CS---QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~ 265 (430)
+.++++|+.||.|.+||++... ++ ..-.+|.-.|.++.|-| + .++.+++.|.+++|||..+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 4449999999999999997532 11 01136778999999987 3 799999999999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEcCCCe
Q 014104 266 RVATLRSTDCTGIKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGGIDGV 341 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~ 341 (430)
....|+ .++.|++-+++|-. -++|+|..+-.|++.|+.+|...+.+.+|.+.|.++. |+|... .|++|+.||.
T Consensus 136 ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~-Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 136 EAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE-WSPSSEWVLATGSADGA 212 (397)
T ss_pred eeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE-eccCceeEEEecCCCce
Confidence 988888 67788888888843 4788899999999999999999999999999999999 888776 5689999999
Q ss_pred EEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 342 LRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 342 i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
|++||++.. -+...+..|.... .++.....+|.+.|++++| ++.++++++.|..+
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~----------------------~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKR----------------------PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred EEEEEeecccceeEEeecccCcc----------------------CccccccccccceeeeeeecccchhhhhccCccce
Confidence 999999865 5677777665410 0011133578899999999 69999999999999
Q ss_pred EEEEecCCCc
Q 014104 419 RLWKFNYSDK 428 (430)
Q Consensus 419 ~vw~~~~~~~ 428 (430)
++|+...|+.
T Consensus 271 r~wn~~~G~n 280 (397)
T KOG4283|consen 271 RVWNMESGRN 280 (397)
T ss_pred EEeecccCcc
Confidence 9999988764
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=176.30 Aligned_cols=238 Identities=16% Similarity=0.252 Sum_probs=196.6
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc---ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
+.++.+++++.+.+.|+ +-.+|.|.+|++...- .++..+.......++|+ .+..|.+.+.+|.|.-||+.+++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 56788899999999988 8889999999998753 45566666666777887 5666999999999999999999999
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
..+....++|++++.+|. ..++.|++||.+..++...++......- ...+.|.+++|+|++..+++|+.||.|++||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 999988999999999976 7889999999888888887776544321 14579999999999999999999999999999
Q ss_pred CCCceeeee-------ec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 305 RTMKSLWET-------RI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 305 ~~~~~~~~~-------~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
..+..+... .. ...-|+++.+. ....|++|..-|+|.+||...|.+++.+..|.
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~---------------- 245 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD---------------- 245 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhh----------------
Confidence 998776521 11 23468888844 33579999999999999999999998887644
Q ss_pred eecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+.|.|++. ++.+++++|.|+.|.-|...+++
T Consensus 246 --------------------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 246 --------------------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred --------------------cceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 48888888 46899999999999998887664
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.6e-22 Score=172.57 Aligned_cols=227 Identities=18% Similarity=0.316 Sum_probs=169.0
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCccc-----cc---------------CCCCceeeeeEEEE---cCCceEEEecCCeEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSV-----FP---------------SREGTFMKGLCMRY---FDPEAVVGCEDGTARV 217 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~-----~~---------------~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~v 217 (430)
.|++++ |+.+..|.|||+.-...+ +. ...+|...+..+.. +...|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 356888 999999999998632110 00 01122222223332 2334999999999999
Q ss_pred EECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCCC-EEEEE
Q 014104 218 FDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCSR-LVFAG 293 (430)
Q Consensus 218 wd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 293 (430)
||+.++++..++..|.+.|.+++|+|. ..+++|+.|++|.+.|.+.... -..++ ..+.|..++|+|... .++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999975 7999999999999999994322 22233 456899999998664 66788
Q ss_pred eCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcceeeecc
Q 014104 294 TTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSASSSSNK 369 (430)
Q Consensus 294 ~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s 369 (430)
..||+|+-+|+|+ ++++.+++.|.+.|.++. +++. -.++++++.|+.|++|++..... +..-...-
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~-~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--------- 418 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS-VNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL--------- 418 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEE-ecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------
Confidence 8999999999998 499999999999999999 5554 45789999999999999874332 21111100
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCCC
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+...|++++ .-.++.||..+.++|||+.++.
T Consensus 419 ---------------------------~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 419 ---------------------------GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---------------------------cceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 124455553 4568999999999999998764
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.5e-23 Score=169.13 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=161.2
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC------CC-----------
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL------SS----------- 263 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~------~~----------- 263 (430)
..|.+.+++.|.+.++|.+++++|+.++.+|.+.|++++|++. .++++++.|++..||.. ..
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3445889999999999999999999999999999999999975 78999999999999951 00
Q ss_pred -----------------------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 264 -----------------------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 264 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
..++..+.+ |...|.+..|-..|+.+++++.|.+..+||+++++++..+.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 012445555 77789999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 400 (430)
+-.. -+|..+++++++.|.+.++||.+ +.++.... +.+|...|+
T Consensus 318 tHcs-tHptQrLVvTsSrDtTFRLWDFR--eaI~sV~V---------------------------------FQGHtdtVT 361 (481)
T KOG0300|consen 318 THCS-THPTQRLVVTSSRDTTFRLWDFR--EAIQSVAV---------------------------------FQGHTDTVT 361 (481)
T ss_pred cccc-cCCcceEEEEeccCceeEeccch--hhcceeee---------------------------------eccccccee
Confidence 8887 88999999999999999999997 33332221 246778999
Q ss_pred EEEEc-CeEEEEeeCCCeEEEEEecCCC
Q 014104 401 CLAVG-MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 401 ~v~~~-~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
++.|+ +..+++|++|.+|+|||+.+-.
T Consensus 362 S~vF~~dd~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 362 SVVFNTDDRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred EEEEecCCceeecCCCceEEEeeecccc
Confidence 99995 7889999999999999998653
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.6e-22 Score=158.89 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=182.2
Q ss_pred EeccccceeEEEe--cCCeEEEEeCCCeEEEEecCCC---eeEEeeecCC-ceeEEEEec--CCCEEE-EEeCCeEEEEE
Q 014104 108 WKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY---KCVEEYSLPN-AASLVDFDF--DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 108 l~~h~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~~~~~--~~~~l~-~~~~~~i~vwd 178 (430)
-.+|.+.|..+.. ...+|+|++.|++|+|+...+. +.+.++.+|. ++.-++|.. -|..|+ ++.||+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999988766 4559999999999999998753 5678888874 455588876 788899 88999999999
Q ss_pred cCCCcc-cccCCCCcee--eeeEEEEc--CCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC------
Q 014104 179 RNGLRS-VFPSREGTFM--KGLCMRYF--DPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED------ 244 (430)
Q Consensus 179 ~~~~~~-~~~~~~~~~~--~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~------ 244 (430)
-++++- ....+..+.. ..+++.+. +..|++++.||.|.|.+.++. ...+....|.-.|+++.|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 998852 2222333333 33444443 233999999999999987654 223455678889999999863
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCCce
Q 014104 245 ---------QLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTMKS 309 (430)
Q Consensus 245 ---------~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~ 309 (430)
..|++|+.|..|+||+..+++- .+++.+ |.+.|+.++|.|.- ..+++++.||++.||..+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 3599999999999999987642 344666 88999999999964 4899999999999998763211
Q ss_pred ---eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 310 ---LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 310 ---~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...++.....++.+. ||+.|..|++++.|+.|.+|.-.
T Consensus 246 ~wk~tll~~f~~~~w~vS-WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVS-WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEE-EeccccEEEEecCCcEEEEEEeC
Confidence 112333457899998 99999999999999999999754
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=4.8e-22 Score=171.56 Aligned_cols=203 Identities=16% Similarity=0.237 Sum_probs=160.8
Q ss_pred EEEEeccccceeEEEec---CCeEEEEeCCCeEEEEecCCCeeE-------EeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 105 IDQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCV-------EEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
-..|.||++.=+.+.|+ .++|++|+.|++|.+||+...... ..+.+|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h----------------------- 226 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH----------------------- 226 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC-----------------------
Confidence 34789999977888884 359999999999999998754321 112222
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECC--CCeeeEEeecCCCCeEEEEecC--CCEEEE
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSE--DQLIIS 249 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~--~~~l~~ 249 (430)
.. .+..+++.+.+.. +++++.|+.+.|||++ +.++.+..++|.++|.|++|+| +..||+
T Consensus 227 ---------------~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 227 ---------------ED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred ---------------Cc-ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEe
Confidence 11 1233444444444 8899999999999999 5667778889999999999997 378999
Q ss_pred EeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-C-------------ceeeee
Q 014104 250 GSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-M-------------KSLWET 313 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~-------------~~~~~~ 313 (430)
|+.|++|.+||+|+.+ ++.++.+ |...|..|.|+|.. ..|++++.|+.+.+||+.. + +++...
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 9999999999999754 5777877 89999999999975 5788999999999999864 1 345667
Q ss_pred ecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~ 348 (430)
.||...|..+. |+|+.. .|++.+.|+.+.||...
T Consensus 370 gGH~~kV~Dfs-Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 370 GGHTAKVSDFS-WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCccccccccc-CCCCCCeEEEEecCCceEEEeecc
Confidence 78999999998 888876 56788899999999976
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=6e-21 Score=172.76 Aligned_cols=323 Identities=11% Similarity=0.071 Sum_probs=229.2
Q ss_pred EeEEEEeccccceeEEEec----CC-eEEEEeCCCeEEEEecCCCe---------------------eEEeee-------
Q 014104 103 IDIDQWKAHSVGVDQCRMK----RG-LILTGVGDKVMRLWSLEGYK---------------------CVEEYS------- 149 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~----~~-~l~s~~~dg~i~iwd~~~~~---------------------~~~~~~------- 149 (430)
..+..+.||.+.|.+++|. +. +|+|+|.|..||||.+.-+. ....+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3677899999999999992 23 99999999999999764221 111111
Q ss_pred ---cC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc------cCCCCc--eeeeeEEEEcCCceEEEecCCeEE
Q 014104 150 ---LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF------PSREGT--FMKGLCMRYFDPEAVVGCEDGTAR 216 (430)
Q Consensus 150 ---~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~------~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~ 216 (430)
+| +-+..+.|+|.+..|+ ++.|.++.+|..+...-++ ....+. .....-|.+++..+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 33 4577789999996666 9999999999988763221 111111 123344555666689999999999
Q ss_pred EEECCCC---eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEe--cCCCCCeEEEEEecCCCE
Q 014104 217 VFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLR--STDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 217 vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~ 289 (430)
+|..... .....+.+|.+.|.+++|+|. +++++.+.|.+-++|-.-..+ .-+.+. .-|...++|++|-+..-.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983322 234556799999999999974 899999999999998754111 112221 126678999999876667
Q ss_pred EEEEeCCCeEEEEeCCCC--------------------------------c-----------------------------
Q 014104 290 VFAGTTAGYASCWDLRTM--------------------------------K----------------------------- 308 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~--------------------------------~----------------------------- 308 (430)
+++|.....+++|+.... +
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 788888888899976311 0
Q ss_pred ---------------eeeeeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 309 ---------------SLWETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 309 ---------------~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
.+..+.+|...|++++ .+|+++++|+++.. ..|++|+..+-..++.+.+|.-.++-+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~-~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALA-ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEE-ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 1123446777899999 99999999999854 35899999988888888888777777777
Q ss_pred cCCceEE----------EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 369 KVSGVIE----------RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 369 s~d~~v~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
|+||+.. +++...-.....-....+.|+..|++.+| ++.+++|+|.|.+|+||....+
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 7777543 33221111111111125789999999999 5788999999999999998765
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.3e-23 Score=190.78 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=165.8
Q ss_pred CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
..+++|+.|..+-+|.+.....+-.+.+|..+|.++.|++. .++++|+.+|+|++||++.++.++++.+ |...+..+.
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~ 119 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVD 119 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceee
Confidence 33889999999999998877788889999999999999965 7889999999999999999999999998 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCc
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 362 (430)
|+|.+.+.+.|+.|+.+++||.+...+...+.+|...|..+. |+|+|+++++|+.|..++|||...|+....|..|..
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~-lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~- 197 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR-LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG- 197 (825)
T ss_pred eccceEEeccccccccceehhhhccCceeeecCCcceeEEEe-ecCCCceeeccCCcceeeeecccccccccccccccc-
Confidence 999999999999999999999998889999999999999998 999999999999999999999999999998876544
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecC
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+.++.|+ .-.+++||.|++|++||+++
T Consensus 198 -----------------------------------~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 198 -----------------------------------KVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred -----------------------------------cccccccCchhhhhccCCCCceeeeeccce
Confidence 66666675 34478999999999999873
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.7e-21 Score=158.69 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=167.7
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCC
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~ 263 (430)
.....|...+.++...++++++|+.|-+|+|||++....+..+-.|.+.|+++.|.+. +.|++|+.||.|.+|+...
T Consensus 37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 3345566667889999999999999999999999999999999999999999999964 3899999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
-.++..++. |.+.|+.++.+|.|++-++.+.|+.+++||+-.|+.-..+.... .-..+. |+|.|.+++.++.+ .|-
T Consensus 117 W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~-w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 117 WELLKSLKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVS-WSPQGDHFVVSGRN-KID 192 (362)
T ss_pred eEEeeeecc-cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeE-EcCCCCEEEEEecc-EEE
Confidence 999999998 88889999999999999999999999999998887655444322 122366 89999988888765 599
Q ss_pred EEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEE
Q 014104 344 VLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 344 vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~ 422 (430)
+|.+.+......+... ..+.|+.| ++..|++|++|+.|++||
T Consensus 193 i~q~d~A~v~~~i~~~-------------------------------------~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 193 IYQLDNASVFREIENP-------------------------------------KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred EEecccHhHhhhhhcc-------------------------------------ccceeeeecCCceEEEecCCceEEEec
Confidence 9998876665555421 25677777 689999999999999999
Q ss_pred ecCCCc
Q 014104 423 FNYSDK 428 (430)
Q Consensus 423 ~~~~~~ 428 (430)
.+....
T Consensus 236 ~ds~~~ 241 (362)
T KOG0294|consen 236 TDSDTP 241 (362)
T ss_pred cCCCcc
Confidence 886543
No 140
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=161.32 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=179.7
Q ss_pred EEeCCeEEEEEcCCCcc--cccCCCCceeeeeEEEE-cCCc-eEEEecCCeEEEEECCCCeeeE--EeecCC-CCeEEEE
Q 014104 168 GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRY-FDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMHC-APVTSLS 240 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~-~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~-~~i~~~~ 240 (430)
+.+.|.|++||..+++. .+..++.... .+.+.. +++. +.+++.||+|++||+++..... ....+. .+..+++
T Consensus 46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 77788888888887653 3444444432 334433 2444 9999999999999999875443 334444 4677888
Q ss_pred ec-CCCEEEEEe----CCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---ee
Q 014104 241 LS-EDQLIISGS----SLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMK---SL 310 (430)
Q Consensus 241 ~~-~~~~l~~~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~ 310 (430)
.+ .++++++|+ .+-.|.+||++..+. ++.+...|...|+++.|+|+. ++|++|+.||.|.+||+.... .+
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence 77 457777775 467899999998776 788877799999999999965 688999999999999998642 22
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc-----------------------Ccceeee
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI-----------------------GSASSSS 367 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------~~~~~~~ 367 (430)
...-.|...|-.+.|.++.-+.|.+-+..++..+|+++.+.+...+.... .....++
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 23334667799999555555679999999999999999876544443211 1113334
Q ss_pred ccCCceEEEeec---ccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 368 NKVSGVIERNEG---RRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 368 ~s~d~~v~~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
|..-+...+... ........+..+..+|...|.++.|+ +..+.|||+||.|.+|..+
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 433333322222 22333345566667788899999995 7889999999999999954
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=161.82 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=153.1
Q ss_pred eccccceeEEEe---cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
.+|.+.++-+.. .+. +.++=+..|.|.|||+.. .+..+..+... +..+... .-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~--~~~s~~~------------------Pl~ 205 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP--HLNALSEPGLE--VKDSEFR------------------PLF 205 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchh--hhhhhcCcccc--ccccccC------------------ceE
Confidence 357777776655 344 777778899999999753 12222111000 0000000 000
Q ss_pred cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee---eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEE
Q 014104 185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAI 258 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~v 258 (430)
.+..+.+. ...++|++.... +++|..-+.|++|...+|.- ...+.+|+..|-.++|+|. ..|++||-||+|+|
T Consensus 206 t~~ghk~E-Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 206 TFNGHKGE-GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred EecccCcc-ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 11222211 223455543332 78887788899999887642 2356679999999999985 79999999999999
Q ss_pred EeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---CceeeeeecCCCceEEEEEeeCC-CC
Q 014104 259 SGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---MKSLWETRISPNVVYSLQHLQND-TS 331 (430)
Q Consensus 259 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~s~~-~~ 331 (430)
||++.+ .++.+ + .|.+.|..+.|+..-.+|++|+.||+++|||+++ ++++..++-|..+|+++. |+|. ..
T Consensus 285 WDiRs~~~~~~~~~-k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie-W~p~e~s 361 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE-WHPHEDS 361 (440)
T ss_pred EEecCCCccceeEe-e-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE-eccccCc
Confidence 999987 33333 3 4888999999998888999999999999999986 678899999999999999 7775 45
Q ss_pred eEEEEcCCCeEEEEEcCC
Q 014104 332 TLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~ 349 (430)
.+++++.|..|.+||+..
T Consensus 362 ~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCCcEEEEEeec
Confidence 788888999999999873
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.8e-22 Score=181.93 Aligned_cols=226 Identities=15% Similarity=0.237 Sum_probs=177.4
Q ss_pred CCeEEEEeCCCeEEEEecCC---CeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCcc--cccCCCCce
Q 014104 122 RGLILTGVGDKVMRLWSLEG---YKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRS--VFPSREGTF 193 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~ 193 (430)
+++|||++..|.|.+||+.. .+.+..|..| ..+..+.|++.. .+|+ |+.||.|++||+..... ++.. ....
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSES 178 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSES 178 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchh
Confidence 45999999999999999987 4555566655 456779998854 5555 89999999999987653 3333 3344
Q ss_pred eeeeEEEEcCCc-eEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce--eE
Q 014104 194 MKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR--VA 268 (430)
Q Consensus 194 ~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~--~~ 268 (430)
+..+.|++..++ ++++...|.+++||++.. ++...+..|.++|.|+.|+|+ .+||+|+.|++|+|||..+++. +.
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence 455666665555 899999999999999865 567888999999999999998 7999999999999999986554 44
Q ss_pred EEecCCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRL-VFAGT--TAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
++. ...+|.+|.|-|...+ |++++ .|-.|+|||++- .-+...+..|...++.++|-+.|...+.+++.||+|..
T Consensus 259 tIn--Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TIN--TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEe--ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 444 5568999999998764 55443 477899999975 45667889999999999854556678999999999877
Q ss_pred EEcCCC
Q 014104 345 LDQNTG 350 (430)
Q Consensus 345 wd~~~~ 350 (430)
-.++++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 666544
No 143
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=156.70 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=181.0
Q ss_pred eEEEEeccccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCc--eeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+...|++|.+.|+++.|. +++|.+|..-|.|++|++.+.+....+...+. +..+..-|++....-+.|..+.+|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 466788999999999994 56999999999999999999887777774433 333555566444446778888888865
Q ss_pred CCcc------------------------c---ccC-------------------------CCCceeeeeEEEEc---CCc
Q 014104 181 GLRS------------------------V---FPS-------------------------REGTFMKGLCMRYF---DPE 205 (430)
Q Consensus 181 ~~~~------------------------~---~~~-------------------------~~~~~~~~~~~~~~---~~~ 205 (430)
.... . ..- ..+....++|.... +..
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 4110 0 000 00011223344321 111
Q ss_pred --eEEEecCCeEEEEECCCCee----------eEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC--ce--eE
Q 014104 206 --AVVGCEDGTARVFDMYSRKC----------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QR--VA 268 (430)
Q Consensus 206 --l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~--~~ 268 (430)
+++|.++|.|.+||+.++.. +.....|..+|.++.+.+- +.=++|+.+..+..|.+... .+ ..
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 78899999999999998733 3344578899999999853 45567888888999988643 22 11
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.+.. ....|..+..-||++.+|+++.|+.|++|+.++++++..++-|.+.|++++ |+|+...+++++.|+.|.+|++
T Consensus 246 e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA-fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA-FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE-eCCCCchhhhccCCceEEeeec
Confidence 2222 334788999999999999999999999999999999999999999999999 9999999999999999999986
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.9e-20 Score=155.28 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=167.6
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCCCe
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS--TDCTGI 278 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v 278 (430)
+|.+++|+.-|.|+|.|+.++++...+.+|...|+.+.+.|. ++++++|.|.+|++||+++..++..|-+ +|...|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 445888999999999999999999999999999999999986 6999999999999999999999988754 378899
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceee----------------------------eeecCCCceEEEEEeeCCC
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW----------------------------ETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~l~~~s~~~ 330 (430)
.++.|+++|.++++++.|.++++|++...+... +-..|...|-|+.|| |
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---g 261 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---G 261 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---h
Confidence 999999999999999999999999997321100 112355566666644 6
Q ss_pred CeEEEEcCCCeEEEEEc-CCCc-------------eEEEEEeccC------------cceeeeccCCceEEEeecccccC
Q 014104 331 STLVVGGIDGVLRVLDQ-NTGE-------------VLSRCVMDIG------------SASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~-~~~~-------------~~~~~~~~~~------------~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
.++++-|-++.|..|.. +-++ .+.++..... ...++.|.+.|.+.+|+....++
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 88999999999999987 2111 1222222221 22578888999999988777665
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..+.......-...|...+| |+..|+...+|++|--||.-
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 42222222222356777777 79999999999999888853
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.5e-20 Score=160.15 Aligned_cols=250 Identities=16% Similarity=0.189 Sum_probs=185.2
Q ss_pred EEEEeccccceeEEEe-c--C-CeEEEEeCCCeEEEEecCCCe----eEEeeecC-CceeEEEEecCC-CEEE-EEeCCe
Q 014104 105 IDQWKAHSVGVDQCRM-K--R-GLILTGVGDKVMRLWSLEGYK----CVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTR 173 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~--~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~ 173 (430)
....+-|.+.|++++| | + ..+++|+.-|+|-+||+.+.+ -+..+..| ..+..+.|+|.+ ..++ ++.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4466789999999999 3 2 289999999999999995322 23333333 457779999954 3444 899999
Q ss_pred EEEEEcCCCcc--cccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecCC--CEE
Q 014104 174 ICIWRRNGLRS--VFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLI 247 (430)
Q Consensus 174 i~vwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l 247 (430)
|+.-|+++... ++... .......+.+....+.++.+..=|...+||++++.. ...+..|...|.+|+++|- .++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999998752 22222 112222233344455588888878999999998754 6667778889999999974 799
Q ss_pred EEEeCCCeEEEEeCCCCce-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC----CCceeeeeecCC-
Q 014104 248 ISGSSLGSIAISGLSSDQR-----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR----TMKSLWETRISP- 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~- 317 (430)
++++.|++++|||++.-.. +.++. |...|.+..|+|.+-.|++.+.|..|+|||.. ...+...+. |.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 9999999999999986332 34444 88899999999999889999999999999984 333333333 22
Q ss_pred -----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 318 -----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 318 -----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
-...... |.|+..++++|-.-..|-|+|-..++.+..+..
T Consensus 416 ~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 416 RTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred cccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 1233444 899999999999999999999988887776543
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=8.7e-20 Score=165.32 Aligned_cols=317 Identities=11% Similarity=0.078 Sum_probs=217.4
Q ss_pred eEEEEeccccceeEEEe-cCC----eEEEEeCCCeEEEEecCCCee--EEeeecCCceeEEEEecCCCEEE-EEeCCeEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG----LILTGVGDKVMRLWSLEGYKC--VEEYSLPNAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~----~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.+.++.||.++|+|+.+ +.. ++++|+.|+.|++|.++.... +..+.+ ....++++......+. .+.|+.+.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEE
Confidence 46688999999999998 332 799999999999999984333 344444 4666677766555554 47899999
Q ss_pred EEEcCCCccc----ccC-CCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEec-CC-
Q 014104 176 IWRRNGLRSV----FPS-REGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLS-ED- 244 (430)
Q Consensus 176 vwd~~~~~~~----~~~-~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~-~~- 244 (430)
+||.+..+.. +.. ....+...++..++.+. ++.|+.+..|.++.-.+. +.+..+.+|.+.|.+++|. ++
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 9999655511 111 11111112222222222 777888888888865533 4677889999999999998 33
Q ss_pred --CEEEEEeCCCeEEEEeCCCCc---------------------eeEE---------EecCCCCCeEEEEEecCCCEEEE
Q 014104 245 --QLIISGSSLGSIAISGLSSDQ---------------------RVAT---------LRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 245 --~~l~~~~~dg~i~vwd~~~~~---------------------~~~~---------~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
-+++++|.|..|++|.+.-+. .... +..+|+..|+++.|+|.+..|.+
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 488999999999999875322 1111 12248899999999999989999
Q ss_pred EeCCCeEEEEeCCCCcee-------eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC---ceEEEEEeccCc
Q 014104 293 GTTAGYASCWDLRTMKSL-------WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---EVLSRCVMDIGS 362 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~-------~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~ 362 (430)
++.|.++.+|...+..-+ .+..+..+..++.. |+|++..+++-+..|-.++|..... .....+.+|.+.
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l-w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL-WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEE-EcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999987654222 22333345577777 9999999999999999999984321 223334455555
Q ss_pred c----------eeeeccCCceEEEeecccccCCccccc--CCCCCCCCeeEEEE-c-CeEEEEeeCCCeEEEEEec
Q 014104 363 A----------SSSSNKVSGVIERNEGRRLSAGCCIDR--IPKTIRPPITCLAV-G-MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 363 ~----------~~~~~s~d~~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~-~-~~~l~t~~~Dg~v~vw~~~ 424 (430)
+ ++++.+.|-+.+++-.+. ....... -|+-|...++|+++ + ...+++|.++..+|+|+..
T Consensus 364 V~dv~W~psGeflLsvs~DQTTRlFa~wg--~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQTTRLFARWG--RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ceeeeecCCCCEEEEeccccceeeecccc--cccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 5 455555555554443331 1111222 24678899999999 5 5678999999999999864
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=149.40 Aligned_cols=245 Identities=13% Similarity=0.170 Sum_probs=173.2
Q ss_pred eeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCC
Q 014104 115 VDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE 190 (430)
Q Consensus 115 v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~ 190 (430)
-.|+.|+ .| +||+|..||.|.|||+.+...-+.+..| .++.+++|++||+.|+ ++.|..+.+||+..+..+....-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 6788995 45 9999999999999999998877777776 6788899999999999 89999999999998876544444
Q ss_pred CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeec-CCC----CeEEEEecC-CCEEEEEeCCCeEEEEeCCC
Q 014104 191 GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRM-HCA----PVTSLSLSE-DQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~----~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~ 263 (430)
...+....+.+-... .++.-.+..-.+.++..++. ..+.. ..+ .-.+..|.+ ++++++|...|.+.++|..+
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 443333444443333 33333333344444433211 11110 011 112234554 58999999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-------Cce--eeeeec--CCCceEEEEEeeCCCCe
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-------MKS--LWETRI--SPNVVYSLQHLQNDTST 332 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~--~~~~~~--~~~~v~~l~~~s~~~~~ 332 (430)
.+++..++......|..+.|+..|++|+..+.|+.|+.|+++. +++ .+.++. ....=.+++ |+.+|.|
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc-fs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC-FSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee-ecCCccE
Confidence 9999888863336899999999999999999999999999873 111 111110 111223444 8899999
Q ss_pred EEEEcC-CCeEEEEEcCCCceEEEEEeccC
Q 014104 333 LVVGGI-DGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 333 l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++++. ...++||....|.+++.+.+..+
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCch
Confidence 988873 46799999999999999987554
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-20 Score=161.26 Aligned_cols=255 Identities=14% Similarity=0.174 Sum_probs=193.4
Q ss_pred ceeEEEecC-CeEEEE--eCCCeEEEEecCCC--ee--EEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc
Q 014104 114 GVDQCRMKR-GLILTG--VGDKVMRLWSLEGY--KC--VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV 185 (430)
Q Consensus 114 ~v~~~~~~~-~~l~s~--~~dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~ 185 (430)
.+.++.|.. +.|+++ +.|..|++|.-... +. +....+ +...+++......+++ ++..+.|+|||+. .+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhhhhcceeeeccCcCceeeehhhH-HHHH
Confidence 478888853 345544 55788999974432 11 122222 2344444444556777 8889999999999 4445
Q ss_pred ccCCCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCCeeeEEeecC-CCCeEEEEecCC--CEEEEEeCCCeEEEEe
Q 014104 186 FPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLSED--QLIISGSSLGSIAISG 260 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~~~~--~~l~~~~~dg~i~vwd 260 (430)
.....+|...+.++.++..+ |++++..|.|.+..+.++.....+... ...|.-+.|++. .+|.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 55555666677787776554 999999999999999998877777644 345668999975 5788899999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.....++..+...|..+...++|+|.. .+|++.+.|..|.+||.+..+....+.. ..+...++ |+++|.+|+.|+..
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstva-f~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVA-FSECGTYLCAGNSK 271 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceee-ecCCceEEEeecCC
Confidence 998888888877799999999999965 4677889999999999998776666553 36788888 99999999999999
Q ss_pred CeEEEEEcCC-CceEEEEEeccCcceeeeccCCc
Q 014104 340 GVLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 340 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|.|..||++. ..++..+..|...+..+++-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999985 45788888877766555555444
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=156.80 Aligned_cols=182 Identities=18% Similarity=0.278 Sum_probs=150.2
Q ss_pred eEEEecCCeEEEEECCC----------------CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCcee
Q 014104 206 AVVGCEDGTARVFDMYS----------------RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
.++-+..|.|+|||+.. .+++.++.+|.+.=..++|+|- ..+++|.--+.|++|...++.-.
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK 247 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCcee
Confidence 56667889999999852 2466788899998899999983 56888888889999999887643
Q ss_pred ---EEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCC---ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 268 ---ATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTM---KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 268 ---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..|.+ |...|..++|+|..+ .|++++.||+|+|||+|.+ .++. .+.|.+.|+-+. |+.+..+|++|+.||
T Consensus 248 vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVIS-Wnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 248 VDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVIS-WNRREPLLASGGDDG 324 (440)
T ss_pred ecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEE-ccCCcceeeecCCCc
Confidence 34555 888999999999764 7789999999999999987 3343 388999999998 888888999999999
Q ss_pred eEEEEEcCC---CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeC
Q 014104 341 VLRVLDQNT---GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHN 414 (430)
Q Consensus 341 ~i~vwd~~~---~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~ 414 (430)
+++|||+++ ++++..++. |..+|++|.|+ ...|+++|.
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~------------------------------------Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKY------------------------------------HKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred eEEEEEhhhccCCCcceeEEe------------------------------------ccCCeeEEEeccccCceEEeccC
Confidence 999999985 456666665 55699999995 677999999
Q ss_pred CCeEEEEEecCC
Q 014104 415 SKYIRLWKFNYS 426 (430)
Q Consensus 415 Dg~v~vw~~~~~ 426 (430)
|..|.+||+...
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 999999998753
No 150
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.86 E-value=3.5e-19 Score=171.03 Aligned_cols=326 Identities=15% Similarity=0.130 Sum_probs=215.9
Q ss_pred hhhcccCCEeEEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCC-------CeeEEeee-cCCceeEEEEecCC
Q 014104 95 RFALEEGRIDIDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEG-------YKCVEEYS-LPNAASLVDFDFDE 163 (430)
Q Consensus 95 ~~~~~~~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~-------~~~~~~~~-~~~~~~~~~~~~~~ 163 (430)
...|...+..+..|..|...|..++.+ ++ +++|||.||+|++||... .+...++. ....+..+.+.+.+
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 455888889999999999999988883 33 999999999999999753 12334444 34567778888999
Q ss_pred CEEE-EEeCCeEEEEEcCCCc--cc-----ccCCCCceeeeeEEEEc-----CCceEEEecCCeEEEEECCCCeeeEEee
Q 014104 164 SKIV-GLIGTRICIWRRNGLR--SV-----FPSREGTFMKGLCMRYF-----DPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 164 ~~l~-~~~~~~i~vwd~~~~~--~~-----~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
+.++ ++.||.|.+.+++... .. ..........++.+..+ +..++.+...+.|..||++.......++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 9998 9999999999988621 11 11111111112333221 2247888888999999998776555544
Q ss_pred --cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC---EEEE-Ee-CCCeEEEE
Q 014104 231 --MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR---LVFA-GT-TAGYASCW 302 (430)
Q Consensus 231 --~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~-~~-~dg~i~i~ 302 (430)
...+.|++++.+|. ++++.|+..|.+.+||++-+.++.....++..+++.+..+|-.+ ..++ +. ..+.|.+|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 34578999999986 89999999999999999999998888766667888888887443 4444 44 56789999
Q ss_pred eCCCCceeeeeecC-----------------C---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE-EEEEeccC
Q 014104 303 DLRTMKSLWETRIS-----------------P---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL-SRCVMDIG 361 (430)
Q Consensus 303 d~~~~~~~~~~~~~-----------------~---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~ 361 (430)
++.+|.....+... . ..+.+ . +...+..+.+|+.|..|+.||....+.. ....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~-~-~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC-G-VCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee-e-cccCCceeeecCCccceeeccCCCcccccccccCccc
Confidence 99987554443322 0 11111 1 3334568899999999999998865544 22222111
Q ss_pred cc---------eeeeccCCceEEEe---ecccc---cCCcccc----cCCCCCCCCeeEEEE---cCeEEEEeeCCCeEE
Q 014104 362 SA---------SSSSNKVSGVIERN---EGRRL---SAGCCID----RIPKTIRPPITCLAV---GMKKVVTTHNSKYIR 419 (430)
Q Consensus 362 ~~---------~~~~~s~d~~v~~~---~~~~~---~~~~~~~----~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~ 419 (430)
.. ..+.+++--...+. +.... .....++ .....|..+|+++++ +..+|++++.||.|+
T Consensus 1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Ik 1428 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIK 1428 (1431)
T ss_pred cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeee
Confidence 11 11111110000000 00000 0011111 123468899999998 456899999999999
Q ss_pred EEE
Q 014104 420 LWK 422 (430)
Q Consensus 420 vw~ 422 (430)
||.
T Consensus 1429 iWk 1431 (1431)
T KOG1240|consen 1429 IWK 1431 (1431)
T ss_pred ecC
Confidence 995
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.3e-20 Score=159.75 Aligned_cols=185 Identities=17% Similarity=0.244 Sum_probs=148.0
Q ss_pred CCceEEEecCCeEEEEECCCCe---eeE------------------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEE
Q 014104 203 DPEAVVGCEDGTARVFDMYSRK---CSQ------------------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAIS 259 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~---~~~------------------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vw 259 (430)
+++++.|+.|..|.|||+.-.. +.. ...+|+..|.++.|+.. +.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 3459999999999999985211 111 12368888999999854 799999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee-eeeecCCCceEEEEEeeCCCC-eEEEE
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSL-WETRISPNVVYSLQHLQNDTS-TLVVG 336 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~-~l~s~ 336 (430)
|+.++++..++.. |...|.++.|+|.. .+|++|+.|++|.+.|.|..... ..++ -.+.|-.++ |.|... .++++
T Consensus 272 D~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~-w~~~se~~f~~~ 348 (463)
T KOG0270|consen 272 DVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVA-WDPHSENSFFVS 348 (463)
T ss_pred EcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEE-ecCCCceeEEEe
Confidence 9999999999985 88899999999864 68889999999999999952222 2222 236788888 766554 66778
Q ss_pred cCCCeEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEe
Q 014104 337 GIDGVLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTT 412 (430)
Q Consensus 337 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~ 412 (430)
..||+|+-+|+++. +++.++..|.+ +|.+++++ ..+++|+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~------------------------------------~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDD------------------------------------EISGLSVNIQTPGLLSTA 392 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccC------------------------------------CcceEEecCCCCcceeec
Confidence 89999999999864 88998887555 89999985 6789999
Q ss_pred eCCCeEEEEEecCC
Q 014104 413 HNSKYIRLWKFNYS 426 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~ 426 (430)
|.|+.|++|++...
T Consensus 393 s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 393 STDKVVKLWKFDVD 406 (463)
T ss_pred cccceEEEEeecCC
Confidence 99999999998743
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=155.49 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=185.7
Q ss_pred cccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEe--eecCC--ceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 111 HSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEE--YSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
-.-+|.+..| ++| .+++++.-..+..||+.+.+..+. ..+.. ......+++++++|+ .+..|.|.+....++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 3457777778 566 799999999999999998765432 22322 345578899999999 899999999999999
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe--EEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV--TSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i--~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
+.+........+..++|..++..|++.+.+|.|.+||+++..+++.+.. .+.| ++++.+++ .++|+|+..|.|-||
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEe
Confidence 8766655566677788888888899999999999999999999988874 3444 45566644 899999999999999
Q ss_pred eCCC------CceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeecC---CCceEEEEEeeC
Q 014104 260 GLSS------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRIS---PNVVYSLQHLQN 328 (430)
Q Consensus 260 d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~s~ 328 (430)
|..+ .+++..+.. ....|+++.|+|+++.|+.++. +..+++-.+.+......+... -+.|+||+ |||
T Consensus 415 d~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a-FSP 492 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA-FSP 492 (514)
T ss_pred ccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE-ecC
Confidence 9653 445555554 4558999999999999997764 567999888876655554432 26799999 999
Q ss_pred CCCeEEEEcCCCeEEEEEcC
Q 014104 329 DTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.+|+.|..+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 99999999999999999874
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=3.8e-19 Score=151.12 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=132.5
Q ss_pred cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEecCC--CEEEEEeCCC
Q 014104 185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLSED--QLIISGSSLG 254 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg 254 (430)
.+..|.+.+. .+.|++++.. |++|++|.+|.||++..+ +++..+.+|...|..++|+|- +.|++++.|.
T Consensus 76 ~v~GHt~~vL-Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVL-DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCcccccc-ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3444554433 3556666665 999999999999998654 457788999999999999985 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
+|.+||+.+|+.+.++. |...|+++.|+.+|.+|++.+.|..|+|||.++++.+.+-.+|.+.-..-+.|-.+|..+-
T Consensus 155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred eEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 99999999999998887 9999999999999999999999999999999999999988888754332223656788444
Q ss_pred EEc---CCCeEEEEEcCCC
Q 014104 335 VGG---IDGVLRVLDQNTG 350 (430)
Q Consensus 335 s~~---~dg~i~vwd~~~~ 350 (430)
||- .+..+-+||..+-
T Consensus 233 TGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eccccccccceeccCcccc
Confidence 443 5678999998754
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3.3e-18 Score=154.70 Aligned_cols=238 Identities=14% Similarity=0.155 Sum_probs=189.1
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+++++||.+.|+|++++ || .++||+.|..|.+|+..- +-+-.+.+.+.+.++.|+|-...|++++=...-+|..+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q 123 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ 123 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence 578999999999999994 66 999999999999998553 445567777889999999999999987777888898776
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee---cCCCCeEEEEecCC------CEEEEEeC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSED------QLIISGSS 252 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~~~~------~~l~~~~~ 252 (430)
...... ........++|..++.+++.|-.||+|.+-+- +++.-..+. +.+++|++++|+|+ +.++....
T Consensus 124 K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 124 KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 542221 12222344566667788999999999999874 455433443 46789999999963 57888888
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
..++.++.+. |+.+.+-+. ..-...|+.+.|+|.++..|+.|+.+.+|. +.|-.+.++-.....|+.++ ..|++++
T Consensus 202 ~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~-~~PNsQ~ 277 (1081)
T KOG1538|consen 202 GQTLSFYQLS-GKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQ-AKPNSQY 277 (1081)
T ss_pred cceeEEEEec-ceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEE-EccCCce
Confidence 8999998875 666654333 344678999999999999999999999996 44777777766778999999 9999999
Q ss_pred EEEEcCCCeEEEEEcC
Q 014104 333 LVVGGIDGVLRVLDQN 348 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~ 348 (430)
++.|+.||+|-.|++.
T Consensus 278 v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCeeehhhhH
Confidence 9999999999999875
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.6e-20 Score=175.25 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=194.4
Q ss_pred eCCCeEEEEecC--CC----eeEEeeecCCceeEEEEecCCCE----EE-EEeCCeEEEEEcCCC---c--c---cccCC
Q 014104 129 VGDKVMRLWSLE--GY----KCVEEYSLPNAASLVDFDFDESK----IV-GLIGTRICIWRRNGL---R--S---VFPSR 189 (430)
Q Consensus 129 ~~dg~i~iwd~~--~~----~~~~~~~~~~~~~~~~~~~~~~~----l~-~~~~~~i~vwd~~~~---~--~---~~~~~ 189 (430)
+.+.++.||.+. +. +.+..+.....-.-++|.+.+.. |+ |..||.|.+||...- . . ....|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 335566666543 22 23344444455566888887765 66 788999999998752 1 2 24455
Q ss_pred CCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 264 (430)
.+++.. +.+..+.+ .+++|+.||.|.|||+...+.-.... ...+.|.+++|+.. ..|++++.+|.+.|||++..
T Consensus 116 ~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 116 TGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 565533 66666666 49999999999999997644332221 23568999999854 78999999999999999998
Q ss_pred ceeEEEecCCC-CCeEEEEEecCCC-EEEEEeCCC---eEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 265 QRVATLRSTDC-TGIKTLCYNPCSR-LVFAGTTAG---YASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 265 ~~~~~~~~~~~-~~v~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+.+-.+..... ..+..++|+|+.. .+++++.|. .|.+||+|. ..+++.+++|...|.++.|...|..+|++++.
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 88777765222 2478899999874 455555543 599999986 56778889999999999944445589999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNS 415 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~D 415 (430)
|+.|.+|+.++++.+..+....+ .+..+.| +...++.++-|
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~n------------------------------------W~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGN------------------------------------WCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCc------------------------------------ceeeeeecCCCcchhhhheec
Confidence 99999999999999999876333 6777888 46679999999
Q ss_pred CeEEEEEecCCC
Q 014104 416 KYIRLWKFNYSD 427 (430)
Q Consensus 416 g~v~vw~~~~~~ 427 (430)
|.|.||.+....
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987654
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.8e-18 Score=147.09 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=151.7
Q ss_pred EEeccccceeEEEe---cCCeEEEEeCCCeEEEEecCCCeeE-------EeeecC-CceeEEEEecCCCEEEEEeCCeEE
Q 014104 107 QWKAHSVGVDQCRM---KRGLILTGVGDKVMRLWSLEGYKCV-------EEYSLP-NAASLVDFDFDESKIVGLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~ 175 (430)
.+.||+++|..++| +|..|||||.|.+|.||++..+-.. ..+.+| ..+..++|+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-------------- 141 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-------------- 141 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc--------------
Confidence 45799999999999 3449999999999999998764333 333333 1222233333
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d 253 (430)
.-.. |++++.|.+|.+||+.+|+.+.++. |.+.|+++.|+ ++.++++++.|
T Consensus 142 --------------------------tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 142 --------------------------TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred --------------------------cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 2222 8899999999999999999988888 99999999999 56999999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCce---eeeeecCCCceEEEEEee
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKS---LWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~s 327 (430)
..|+|||.++++.+..-..+.......+.|-.+|..+-+|. .+..+-+||..+.+. +.++....+.+.- |+.
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~P--FyD 272 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLP--FYD 272 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEe--eec
Confidence 99999999999999888663334566677888888555553 467899999876432 3344444333322 588
Q ss_pred CCCCeEE-EEcCCCeEEEEEcCCCce
Q 014104 328 NDTSTLV-VGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 328 ~~~~~l~-s~~~dg~i~vwd~~~~~~ 352 (430)
+|.+.++ +|-.|+.|+.|.+.+..+
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCc
Confidence 9988775 555899999999987653
No 157
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.1e-16 Score=135.26 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=172.6
Q ss_pred ccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC--CeEEEEEcCCCcccc
Q 014104 112 SVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG--TRICIWRRNGLRSVF 186 (430)
Q Consensus 112 ~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--~~i~vwd~~~~~~~~ 186 (430)
...+....|+.. .|..|+.|| -++++.+..... .-...++..++..-+....++ .+.+ ..+++++++....+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 345566667543 677777777 477776653331 111235666677777777776 4433 458888888776554
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC---CCCeEEEEecCC-CEEEEE--eCCCeEEEEe
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLSED-QLIISG--SSLGSIAISG 260 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~~~-~~l~~~--~~dg~i~vwd 260 (430)
...-.+ .++++..+.+.+++.-.+ .|+|||+.+-+.++++..- ...+.++.++++ .+++.= ...|.|.+||
T Consensus 83 e~~fpt--~IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFFPT--SILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEecCC--ceEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 333222 346677777778877776 4999999999998888643 334555665543 466543 3568999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeeecCC--CceEEEEEeeCCCCeEEEEc
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETRISP--NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~~~l~s~~ 337 (430)
..+-+.+..+.. |.+.+-+++|+|+|.+||+++..|+ |++|.+.+|+.+.+++... ..|++++ |+|++++|++.|
T Consensus 160 ~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 160 TINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASS 237 (391)
T ss_pred cccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEec
Confidence 999999999996 9999999999999999999999997 6999999999999987554 5789998 999999999999
Q ss_pred CCCeEEEEEcCCC
Q 014104 338 IDGVLRVLDQNTG 350 (430)
Q Consensus 338 ~dg~i~vwd~~~~ 350 (430)
..++|++|.++..
T Consensus 238 ~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 238 NTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEEEeccc
Confidence 9999999998743
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2e-16 Score=149.03 Aligned_cols=247 Identities=25% Similarity=0.407 Sum_probs=192.0
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCe-eEEeeecCC--ceeEEEE-ecCCC-EEE-E-EeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPN--AASLVDF-DFDES-KIV-G-LIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~~-~l~-~-~~~~~i~vw 177 (430)
.+.+|...+.++.+. .+ .++.++.|+.+.+|+...+. .+..+.... ....+.+ .+++. .++ . ..++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999994 44 78888899999999998876 666666633 3444555 77777 444 3 448999999
Q ss_pred EcCC-Cc--ccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEe
Q 014104 178 RRNG-LR--SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS 251 (430)
Q Consensus 178 d~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~ 251 (430)
+... .. .....+... ...+.+.+.+..+++++. |+.+++|++.++..+..+.+|...|.+++++|+ . .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCccc-EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9997 33 223333333 335666666666777775 999999999988899999999999999999976 4 555559
Q ss_pred CCCeEEEEeCCCCceeE-EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVA-TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s~~ 329 (430)
.|+.|++||...+..+. .+.. |.... ...|+|++.++++++.|+.+++|+.+.... +..+..|...+.++. +.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSG-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA-FSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCC-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE-ECCC
Confidence 99999999999888877 5665 55554 338999998899999999999999987664 444467888999998 9998
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+..+++++.|+.+.+||..+........
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 8888889989999999998777666554
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=6e-19 Score=158.52 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=94.8
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEeCCCC-------ceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcC
Q 014104 278 IKTLCYNP-CSRLVFAGTTAGYASCWDLRTM-------KSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 278 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~ 348 (430)
|+.+.|+| |...|++++.||.|++|.+..+ .+...+..|...|+++. |+|- ...|++++.|-+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slR-fHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLR-FHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEE-ecchhhhHhhhhhccceeeeeehh
Confidence 67778877 4468999999999999998653 45567889999999999 8774 4588999999999999999
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+++....+.+ |++.|..++| ||+.++|.+.||+|+||+-..+
T Consensus 709 ~~~~~~~l~g------------------------------------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVG------------------------------------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheecc------------------------------------CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 9888777765 4457788888 5888999999999999998776
Q ss_pred Cc
Q 014104 427 DK 428 (430)
Q Consensus 427 ~~ 428 (430)
++
T Consensus 753 e~ 754 (1012)
T KOG1445|consen 753 EQ 754 (1012)
T ss_pred CC
Confidence 54
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=142.85 Aligned_cols=237 Identities=15% Similarity=0.145 Sum_probs=172.4
Q ss_pred EEEEecCCCEEE-EEeCCeEEEEEcCCCc--------------ccccCCCCceeeeeEEEE----cCC---ceEEEecCC
Q 014104 156 LVDFDFDESKIV-GLIGTRICIWRRNGLR--------------SVFPSREGTFMKGLCMRY----FDP---EAVVGCEDG 213 (430)
Q Consensus 156 ~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~dg 213 (430)
...|+|||..|+ .+.|..+.+|++...- ....-..+..+...|+-+ ..| .+++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 368999999988 7889999999975311 112223344444444432 222 388889999
Q ss_pred eEEEEECCCCeeeEEeec--CCC---CeEEEEecCC-CEEEEEeCCCeEEEEeC-CCCceeEE---Ee---cCCCCCeEE
Q 014104 214 TARVFDMYSRKCSQIIRM--HCA---PVTSLSLSED-QLIISGSSLGSIAISGL-SSDQRVAT---LR---STDCTGIKT 280 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~--~~~---~i~~~~~~~~-~~l~~~~~dg~i~vwd~-~~~~~~~~---~~---~~~~~~v~~ 280 (430)
.|++||.-+|+....+.+ |.. .-.+++|+|+ .+|++ +....|++||+ +.|+.... +. ....+-+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 999999999987766653 333 3468999987 55554 56789999999 55543221 11 113457899
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCC-CceEEEEE
Q 014104 281 LCYNPCSR-LVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNT-GEVLSRCV 357 (430)
Q Consensus 281 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~ 357 (430)
++|+|... .+++|+....+-||.-..+.++..+-+|.+.|+.+. |.++|+.|++|+ .|-.|-.||++. +.++..+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~-~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ-WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE-eccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 99999654 899999999999999999999999999999999999 999999999998 467899999984 45566665
Q ss_pred eccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 358 MDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 358 ~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|... ..+.....++..++.|++|+.||.|++||++.
T Consensus 292 rhv~~-------------------------------TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 292 RHVGD-------------------------------TNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccC-------------------------------ccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 44330 00111223444589999999999999999986
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.1e-19 Score=171.86 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=183.3
Q ss_pred ceeEEEe------cCCeEEEEeCCCeEEEEecCC---C---eeEEeeec-CCceeEEEEecCCC-EEE-EEeCCeEEEEE
Q 014104 114 GVDQCRM------KRGLILTGVGDKVMRLWSLEG---Y---KCVEEYSL-PNAASLVDFDFDES-KIV-GLIGTRICIWR 178 (430)
Q Consensus 114 ~v~~~~~------~~~~l~s~~~dg~i~iwd~~~---~---~~~~~~~~-~~~~~~~~~~~~~~-~l~-~~~~~~i~vwd 178 (430)
.-+.++| +.|.|+.|..||+|.+||... + +.+.+... ++.+..+.|++... .|+ |+.+|.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 3456666 124799999999999999765 2 23344444 46677799999766 666 88899999999
Q ss_pred cCCCcccccC-CCCceeeeeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCC--CeEEEEecCC--CEEEEE
Q 014104 179 RNGLRSVFPS-REGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCA--PVTSLSLSED--QLIISG 250 (430)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~~~~--~~l~~~ 250 (430)
++..+..+.. .......+.+++++.+. |++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|+ ..++++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence 9986644333 22233345566655444 89999999999999998888877776654 4778999986 567777
Q ss_pred eCCC---eEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 251 SSLG---SIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 251 ~~dg---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
+.|. .|.+||+|.. ..++.+++ |..+|.++.|++.+ .+|++++.|+.|.+|+..+++.+.++....++++.+.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~- 303 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ- 303 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee-
Confidence 6554 6999999854 45666665 88999999999977 7888999999999999999999999998889999999
Q ss_pred eeCCCC-eEEEEcCCCeEEEEEcCCCc
Q 014104 326 LQNDTS-TLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 326 ~s~~~~-~l~s~~~dg~i~vwd~~~~~ 351 (430)
|.|... .+++++-||.|.|+.+..+.
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 777665 88888999999999987543
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.2e-18 Score=159.46 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=197.1
Q ss_pred ceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC----CceeEEEEec--CCCEEE-EEeCCeEEEEEcCCC--
Q 014104 114 GVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP----NAASLVDFDF--DESKIV-GLIGTRICIWRRNGL-- 182 (430)
Q Consensus 114 ~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~-- 182 (430)
+-..+.|. -. .++++...-.|+|||.+.++.+..|..+ ..+..+.+-. |...++ ++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 44455563 23 7777877779999999999998888754 3344455443 223344 999999999984221
Q ss_pred ---ccc--ccCCC------CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEec-C-CCEEE
Q 014104 183 ---RSV--FPSRE------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS-E-DQLII 248 (430)
Q Consensus 183 ---~~~--~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~-~-~~~l~ 248 (430)
+.+ +.... .....++.|......|++++.-..|+|||....+++..+.. ....|+++.-+ + ++.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 111 11111 11123455555566688888889999999988777766653 34467777766 3 48999
Q ss_pred EEeCCCeEEEEeCCCCce---eEEEecCCCCC--eEEEEEecCCC-EEEEEeCCCeEEEEeCCCCcee--eeeecCC--C
Q 014104 249 SGSSLGSIAISGLSSDQR---VATLRSTDCTG--IKTLCYNPCSR-LVFAGTTAGYASCWDLRTMKSL--WETRISP--N 318 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~ 318 (430)
+|..||.|++||.+.... +...+. |... |..+.+.+.|- .|++|+.+|.|++||++..... ..+..|. +
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999885433 444444 6655 99999998775 4999999999999999974222 2233333 3
Q ss_pred -ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 319 -VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 319 -~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
..+++. .++....+|+|+. +.|+||++. |+.+..++.++. +.....+
T Consensus 1305 s~lTal~-VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~-----------------------------F~~q~~g 1352 (1387)
T KOG1517|consen 1305 SALTALT-VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPG-----------------------------FMGQRIG 1352 (1387)
T ss_pred ccceeee-eccCCCeeeecCc-ceEEEEecC-hhhhcccccCcc-----------------------------cccCcCC
Confidence 488998 9999999999998 999999987 777777765433 1112235
Q ss_pred CeeEEEEcCe--EEEEeeCCCeEEEEEecCCC
Q 014104 398 PITCLAVGMK--KVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~~~~--~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+.|++|+.. .+|+|+.|.+|.||....+.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 6799999754 47889999999999987654
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4e-19 Score=154.89 Aligned_cols=291 Identities=12% Similarity=0.127 Sum_probs=212.7
Q ss_pred cCCEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCcee--EEEEecC--CCEEE-EEeCC
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFD--ESKIV-GLIGT 172 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~--~~~l~-~~~~~ 172 (430)
+.......|.+|.+.|..|.|. .| .|+|||.|..|.+||...+.....+...+... -..|-|. .+.++ .+.||
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3334556789999999999994 45 99999999999999999988887777543322 2445552 23455 88899
Q ss_pred eEEEEEcCCCc-----ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEe---ecCCC---CeEEEE
Q 014104 173 RICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII---RMHCA---PVTSLS 240 (430)
Q Consensus 173 ~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~i~~~~ 240 (430)
++++=.+.... ..+..+.+++ ..+++.++.+. +.+++.|+.+.-+|++++.+...+ +.+.. ...+++
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~v-hklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPV-HKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCcc-ceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 99987654322 1233444443 45677777777 999999999999999887543332 22222 456778
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCce------eEEEec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQR------VATLRS-----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT- 306 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 306 (430)
.+|. ..+++|+.|..+++||.+.-.. +.++-. .....|++++|+.++.-|.+...|-.|+++.-..
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 8764 6899999999999999874222 222222 1334899999998777777777888899995432
Q ss_pred -C----------ceeee-eecCC--CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 307 -M----------KSLWE-TRISP--NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 307 -~----------~~~~~-~~~~~--~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
| ..+.. +++|. ..|.++-||.|...|+++||.-|.|.||+-.+++.++-+.+...
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----------- 437 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----------- 437 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-----------
Confidence 2 12223 77886 45888889999999999999999999999999998888776433
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.|+|+..+ -..|||.|-|.-||||-..+.+
T Consensus 438 -------------------------VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 438 -------------------------VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred -------------------------eEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 78888886 4569999999999999875444
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=8.6e-18 Score=139.45 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=168.1
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC------CceeEEEEecCCCEEEEEeCCeEEEEEcC-CCc--c---c-ccCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------NAASLVDFDFDESKIVGLIGTRICIWRRN-GLR--S---V-FPSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~i~vwd~~-~~~--~---~-~~~~~ 190 (430)
++++.+.|.-|.+||.-+|+....+..- .+..+++|+|||.+|+++....|+++|+. .++ . + .....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 8999999999999999999988877642 34567999999999999999999999994 333 1 1 11112
Q ss_pred --CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCC-C
Q 014104 191 --GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS-D 264 (430)
Q Consensus 191 --~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~-~ 264 (430)
..+...+++.+... .++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++ +.+.+|+ .|..|..||++. +
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 22333344444444 3899999999999988888999999999999999999965 7777776 477899999985 4
Q ss_pred ceeEEEecCCCCCeEEE--EEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 265 QRVATLRSTDCTGIKTL--CYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.++..+..+....-..| ...|++++|++|+.||.|++||++. +..+..+..+...++.++ ++|--..+++++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs-lnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS-LNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee-cCcccceeeeccCc
Confidence 55666665333233334 4468999999999999999999998 777888888999999998 99988888887754
No 165
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-16 Score=148.16 Aligned_cols=320 Identities=14% Similarity=0.140 Sum_probs=213.7
Q ss_pred eEEEEeccccceeEEEe---cC--CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEE-------------------
Q 014104 104 DIDQWKAHSVGVDQCRM---KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF------------------- 159 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~---~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------- 159 (430)
++..|.+|..++..+.+ +. .++++++.||+|++||...+++++++..+..+..+.+
T Consensus 49 ~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 49 CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccce
Confidence 45678999999999988 23 2888999999999999999988887764332222211
Q ss_pred ----------------------------------------ecCCCEEEEEeCCeEEEEEcCCCcccc---cCCCCce--e
Q 014104 160 ----------------------------------------DFDESKIVGLIGTRICIWRRNGLRSVF---PSREGTF--M 194 (430)
Q Consensus 160 ----------------------------------------~~~~~~l~~~~~~~i~vwd~~~~~~~~---~~~~~~~--~ 194 (430)
++.+.+.....+..+.+|+........ .....|. .
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~ 208 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNI 208 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccc
Confidence 111111122333445556655432111 1111121 3
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCC--C--eeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYS--R--KCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
....+++.+..+++|..||.|.+|.--. + .....+.-|..+|+++.|++ +.++++|+.+|.+.+|.+.+++ .+-
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf 287 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF 287 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccc
Confidence 5577778888899999999999996322 1 23466778999999999995 4899999999999999999988 333
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-----------CCceEEEEEeeCCCCeEEEEcC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-----------PNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++. ..++|..+.++||+.+.+....|..|.+....+.+...++.+- .+-.+.+. ++|.-+.++-.+.
T Consensus 288 LPR-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~-idpr~~~~vln~~ 365 (792)
T KOG1963|consen 288 LPR-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS-IDPRTNSLVLNGH 365 (792)
T ss_pred ccc-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE-EcCCCCceeecCC
Confidence 333 6779999999999999999999999999988665443332221 22344454 6775566666677
Q ss_pred CCeEEEEEcCCCceEEEEEec-----------------------------------------------------------
Q 014104 339 DGVLRVLDQNTGEVLSRCVMD----------------------------------------------------------- 359 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~----------------------------------------------------------- 359 (430)
.|.|.+||+-+.+.++.+..-
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 777877777665554444320
Q ss_pred ---------cC------------cceeeeccCCceEEEeec------ccccCCcccccCCCCCCCCeeEEEEc-CeEEEE
Q 014104 360 ---------IG------------SASSSSNKVSGVIERNEG------RRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVT 411 (430)
Q Consensus 360 ---------~~------------~~~~~~~s~d~~v~~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t 411 (430)
.. ...+++.+.||.+++|.. .......+...+...|..++++.+|. ...+++
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla 525 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA 525 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence 00 003455666777766654 22233333444444578899999993 236777
Q ss_pred eeCCCeEEEEEecCC
Q 014104 412 THNSKYIRLWKFNYS 426 (430)
Q Consensus 412 ~~~Dg~v~vw~~~~~ 426 (430)
.|.|++|.+||..+.
T Consensus 526 ~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 526 VSFDDTITIWDYDTK 540 (792)
T ss_pred EecCCEEEEecCCCh
Confidence 788899999999874
No 166
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.3e-16 Score=134.99 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=173.7
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecC--CeEEEEECCCCeeeEEeecCC
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED--GTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~ 233 (430)
.+.|..+...|..+.....++|+.+.... +.........++.+.+....++..+.+ +.+++++...+..+..+. ..
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 34455566666644444456777665444 222223334566677777775555544 458999998887777765 56
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC--CCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCce
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST--DCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKS 309 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 309 (430)
.+|.++.++..++++. -. ..|+|||+++.+.++++..- +...+.++.+++.+.+++- ....|.|.+||+.+-++
T Consensus 88 t~IL~VrmNr~RLvV~-Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~ 165 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVC-LE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP 165 (391)
T ss_pred CceEEEEEccceEEEE-Ec-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence 7899999976655544 33 34999999999999988753 3446777777777778884 33468899999999999
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
+..+..|.+.+-+++ |+++|.+|||+|..|+ |||+.+.+|+.+++|+-...
T Consensus 166 v~~I~aH~~~lAala-fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------------------------- 217 (391)
T KOG2110|consen 166 VNTINAHKGPLAALA-FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------------------------- 217 (391)
T ss_pred eeEEEecCCceeEEE-ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------------------
Confidence 999999999999999 9999999999999998 59999999999999975332
Q ss_pred ccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 389 DRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 ~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
-..|.+++| |+.+|++.|..++|.|++++.
T Consensus 218 -------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 -------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 126788888 588899999999999999864
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.7e-17 Score=129.03 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=156.8
Q ss_pred cccCCEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEE
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIW 177 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vw 177 (430)
..+|..++-..++|.++|+.++|.+.+|++|+. |.|+=|.....+.-.- .-.+|
T Consensus 48 ~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~-------------------------~K~lw 101 (325)
T KOG0649|consen 48 EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA-------------------------TKRLW 101 (325)
T ss_pred CCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc-------------------------chhhh
Confidence 445556777789999999999999998888876 9999997654222100 00122
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSI 256 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i 256 (430)
.+..+..+-.. +-..+..+.+.+..+.++.++.|+.++-||+++|+...++++|++-|.++.-- .+..+++|++||++
T Consensus 102 e~~~P~~~~~~-evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 102 EVKIPMQVDAV-EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhcCccccCcc-cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 22221111000 00112234444445558888899999999999999999999999999999984 45789999999999
Q ss_pred EEEeCCCCceeEEEecC---------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 257 AISGLSSDQRVATLRST---------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++||.++++.+..+... ....|.+++. +..+|++|+.- .+.+|+++..++...+.. .+.+..+. |
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~t~vfpi-pa~v~~v~-F- 254 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSESTCVFPI-PARVHLVD-F- 254 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCceEEEec-ccceeEee-e-
Confidence 99999999998877531 1124566665 56789888654 599999999888776653 24566665 4
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
....+++++..+.|.-|.+. |..-...+
T Consensus 255 -~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip 282 (325)
T KOG0649|consen 255 -VDDCVLIGGEGNHVQSYTLN-GVLQANIP 282 (325)
T ss_pred -ecceEEEeccccceeeeeec-cEEEEecc
Confidence 34677888888889988875 54444333
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.6e-18 Score=153.54 Aligned_cols=239 Identities=18% Similarity=0.275 Sum_probs=173.3
Q ss_pred EEEecCCCEEE---EEeCCeEEEEEcCCCccc-----ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC----
Q 014104 157 VDFDFDESKIV---GLIGTRICIWRRNGLRSV-----FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR---- 223 (430)
Q Consensus 157 ~~~~~~~~~l~---~~~~~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~---- 223 (430)
-.|..+...++ .+..|.|.||+++..-.+ -...++..+..+.|.++++. |++++.||.|++|.+..+
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 34555555655 667899999999865432 23344555666777777666 999999999999998654
Q ss_pred ---eeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 224 ---KCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 224 ---~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
.+...+..|...|+++.|+| .+.+++++.|-+|++||+++++....+.+ |.+.|..++|+|+|+.+++.+.||+
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCce
Confidence 34567889999999999997 38999999999999999999999889988 8999999999999999999999999
Q ss_pred EEEEeCCCCc-eeeeeecCC-CceEEEEEeeCCCCeEEEEcCC----CeEEEEEcCC--CceEEEEEeccCcceeeeccC
Q 014104 299 ASCWDLRTMK-SLWETRISP-NVVYSLQHLQNDTSTLVVGGID----GVLRVLDQNT--GEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 299 i~i~d~~~~~-~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~d----g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~ 370 (430)
|++|..+.++ ++.+-.+.. ..--.+. |--+|+++++.+.| ..|.+||..+ +..+.+...+...
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~-wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------- 814 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARIL-WACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------- 814 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEE-EEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC--------
Confidence 9999998754 333322211 1112333 55689988888765 4578888764 2334433322110
Q ss_pred CceEEEeecccccCCcccccCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 371 SGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 371 d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
+.-|-....| +-.++||-.|..|.+|.+-..+.|+
T Consensus 815 -------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 815 -------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred -------------------------ccccccccCCCceEEEecCCCceEEEEEecCCCcee
Confidence 0112222333 4568899999999999988777654
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=137.31 Aligned_cols=194 Identities=19% Similarity=0.219 Sum_probs=148.5
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
...+.++..|..+++|+.||.|.+||+.|...-+.+.+|.-+|++++|+++ ..|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 345666777888999999999999999999988999999999999999965 899999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCce--eeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 273 TDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKS--LWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...+|..+.|+|..+..+ +.-.+..-.+-++...+. +..- .+..+.+-+-.+|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 788999999999654333 222333344555543221 1100 00001111111388999999999999999999999
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+-+++..++.... ..|..+-+ .|++|+.-+.|..||.|+++
T Consensus 184 t~e~vas~rits~-----------------------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 184 TLECVASFRITSV-----------------------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeeeeechh-----------------------------------eeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999988875331 25566555 69999999999999999976
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=135.56 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=176.4
Q ss_pred EEEeccccceeEEEe-c--CCeEEEEeCC-------CeEEEEecCCC---------eeEEeee--cCCceeEEEEecCCC
Q 014104 106 DQWKAHSVGVDQCRM-K--RGLILTGVGD-------KVMRLWSLEGY---------KCVEEYS--LPNAASLVDFDFDES 164 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~--~~~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~--~~~~~~~~~~~~~~~ 164 (430)
+.|..|.+.|..++- | .+.|+|+..+ -.+.||.+... +++..+. ..+.+.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 467778899999887 3 2377776553 25789987542 2333333 235678899999999
Q ss_pred EEEEEeCCeEEEEEcCCCccccc----C-CC--CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee-cCCCC
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFP----S-RE--GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-MHCAP 235 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~----~-~~--~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~ 235 (430)
.+++-.++.|.+|+++....+.. . .. .+....-.|++..+. -+....|+++..||+++.++...+. .|...
T Consensus 137 klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 137 KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcce
Confidence 99988899999999987654211 1 01 111222334442222 5556678899999999987766654 68889
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCC----
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTM---- 307 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---- 307 (430)
|..+.|+|+ .+|++|++||.|++||.+.. .+++.+.+ |...|.++.|+|.. +++.+|+.|..|.+|....-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 999999988 58999999999999999854 45777776 88899999999965 56779999999999965321
Q ss_pred -------------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 308 -------------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 308 -------------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..+.++..|.+.|++++|-+.|.-.+++-+.||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12346778999999999545555677889999999887765
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=8.6e-18 Score=151.21 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=156.2
Q ss_pred EEE-EEeCCeEEEEEcCCCc-----ccccCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECCCCeeeEE--eecCCC
Q 014104 165 KIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMYSRKCSQI--IRMHCA 234 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~ 234 (430)
.|+ +..+|.|.++|..... ..+.....|...++. +.+....|++++.|.++++||+.+++++.. +.+|.+
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 344 7788999999987543 223444444433444 444333499999999999999999988776 889999
Q ss_pred CeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce---------------------------eEEEecCCCCCeEE---EE
Q 014104 235 PVTSLSLSED--QLIISGSSLGSIAISGLSSDQR---------------------------VATLRSTDCTGIKT---LC 282 (430)
Q Consensus 235 ~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~v~~---~~ 282 (430)
.|.+++|.+. ..|++|+.||.|.|||++-... +..-. .+...|.+ +.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti~ssvTvv 224 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-AASNTIFSSVTVV 224 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-cccCceeeeeEEE
Confidence 9999999964 6899999999999999874320 00000 12223333 44
Q ss_pred EecCCCEEEEEeC-CCeEEEEeCCCCceeee--------eecC---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 283 YNPCSRLVFAGTT-AGYASCWDLRTMKSLWE--------TRIS---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 283 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+..|...||+++. |+.|++||++....... +..| .-.+.++. ....|.+|++.+.|+.|++||+.+-
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~-lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI-LDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE-ecCCCCeEEEEecCCcEEEEecccc
Confidence 4457888998777 99999999987543221 2223 23466776 7777889988888999999999743
Q ss_pred c--eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 351 E--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 351 ~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. ++..+.++.. ... ..-.++.+|+.++++|+.|....+|.++..+
T Consensus 304 s~sP~~~~sg~~~----------~sf----------------------~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 304 SISPVAEFSGKLN----------SSF----------------------YVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred CcCchhhccCccc----------cee----------------------eeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 2 2222222111 000 0123466689999999999999999998765
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=3.4e-17 Score=133.86 Aligned_cols=292 Identities=12% Similarity=0.119 Sum_probs=190.3
Q ss_pred eEEEEeC----CCeEEEEecCC--CeeEE-eeecC-CceeEEEEecCCCEEE-EEeC--------CeEEEEEcCCCcc--
Q 014104 124 LILTGVG----DKVMRLWSLEG--YKCVE-EYSLP-NAASLVDFDFDESKIV-GLIG--------TRICIWRRNGLRS-- 184 (430)
Q Consensus 124 ~l~s~~~----dg~i~iwd~~~--~~~~~-~~~~~-~~~~~~~~~~~~~~l~-~~~~--------~~i~vwd~~~~~~-- 184 (430)
.+++|.. |..|.+-+++. ++... .|.++ +.+..++-+|-...++ +... ..+.+|.+.....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 4555543 56777666554 33332 33333 4455577777555554 3222 2477999865331
Q ss_pred -------cccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEee-----cCCCCeEEEEecC--C-CE
Q 014104 185 -------VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIR-----MHCAPVTSLSLSE--D-QL 246 (430)
Q Consensus 185 -------~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~~~~~~--~-~~ 246 (430)
+........ ...+.|.+++..+++-. |..|.+|++..+.. +..+. ++....++-+|+| + +.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 111121222 34555666555566655 77999999987755 33332 3455678889997 2 55
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
+++ ..|+++..||+++.+....++..|...|..+.|+|+.+ +|++++.||.|++||.+. ..++.++.+|...|+++.
T Consensus 187 v~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 187 VAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred EEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 555 45899999999999999999988999999999999876 677999999999999986 567899999999999999
Q ss_pred EeeCC-CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQND-TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|. .+++++|+.|..|.+|...+-.....+...... +-++|.... .....++ +..+ .....|.+.|.+++
T Consensus 266 -fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de----se~e~~dse-er~kpL~-dg~l-~tydehEDSVY~~a 337 (370)
T KOG1007|consen 266 -FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE----SESEDEDSE-ERVKPLQ-DGQL-ETYDEHEDSVYALA 337 (370)
T ss_pred -ecCccceEEEecCCCceeEEEecccccccccccccccc----ccCcchhhH-Hhccccc-cccc-ccccccccceEEEe
Confidence 7664 568899999999999987643332233222110 000000000 0000000 0011 12246899999999
Q ss_pred E---cCeEEEEeeCCCeEEEEEecC
Q 014104 404 V---GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 404 ~---~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
| |+-.+++-+.||++.|=.+..
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCCh
Confidence 9 467789999999998876653
No 173
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.3e-18 Score=138.97 Aligned_cols=199 Identities=13% Similarity=0.177 Sum_probs=142.9
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCe-----eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc--
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-- 265 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-- 265 (430)
..++++.++..+++++.|++|++|+++.-. +++.- ..-+-.+.+.|.|+ .++++.-...++++|-+...+
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 446666677779999999999999987532 22111 11235678999988 566666677789999865321
Q ss_pred -ee--------EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 266 -RV--------ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 266 -~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
.- ..|...|...+..+-...++.++++++.|..|.+|+++ |+.+..+......-+..+ .||+|++++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa-vSP~GRFia~~ 246 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA-VSPDGRFIAVS 246 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee-eCCCCcEEEEe
Confidence 11 11233355567777777788999999999999999999 999888877666666666 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
+.--.|++|.+--+ .||.+. .. .-....++|++.|..++| +.++++|.|.
T Consensus 247 gFTpDVkVwE~~f~-------------------kdG~fq-----ev----~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFT-------------------KDGTFQ-----EV----KRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred cCCCCceEEEEEec-------------------cCcchh-----hh----hhhheeccchhheeeeeeCCCcceeEEEec
Confidence 99889999986411 111110 00 000112678999999999 4788999999
Q ss_pred CCeEEEEEec
Q 014104 415 SKYIRLWKFN 424 (430)
Q Consensus 415 Dg~v~vw~~~ 424 (430)
||++||||.+
T Consensus 299 DG~wriwdtd 308 (420)
T KOG2096|consen 299 DGKWRIWDTD 308 (420)
T ss_pred CCcEEEeecc
Confidence 9999999975
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.5e-18 Score=151.72 Aligned_cols=251 Identities=14% Similarity=0.187 Sum_probs=187.6
Q ss_pred EEeccccceeEEEecC--CeEEEEeCCCeEEEEecCC--------CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 107 QWKAHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEG--------YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
++..|.+.|+.++|++ ..|++++.||++++|+++. -+.+.+|.+| +.+.++++..++..++ ++.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 7889999999999954 3999999999999999932 2567788887 5567799999999999 9999999
Q ss_pred EEEEcCCCc------------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--CCCCeEEEE
Q 014104 175 CIWRRNGLR------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--HCAPVTSLS 240 (430)
Q Consensus 175 ~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~ 240 (430)
+.|++.... ..+.++.+. +..+.++.....|++++.||+++.|+.....+ .++.. ..+--.+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999765322 122233322 23355555566699999999999999865544 33322 123334566
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+-.. ...++...-+.-.+.+......+..+.... ...+.-+..+|.+.+.+++..|+.|+++|..+++++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 5432 233333344444555666665555554311 12567788899999999999999999999999999999
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
...|...+++++ +.|+|.+|++++.|+.+++|.+....++.....|.
T Consensus 527 ~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 527 MVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeeccceeccee-ecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999 99999999999999999999998888877766554
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.1e-15 Score=138.90 Aligned_cols=265 Identities=11% Similarity=0.134 Sum_probs=167.6
Q ss_pred EEEeCCCeEEEEecCC-Ce--eEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC-Cccc-cc-CCCCceeeee
Q 014104 126 LTGVGDKVMRLWSLEG-YK--CVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG-LRSV-FP-SREGTFMKGL 197 (430)
Q Consensus 126 ~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~-~~~~-~~-~~~~~~~~~~ 197 (430)
++...|+.|.+||+.+ ++ .+..+........++++|+++.|+ + ..++.|.+|+++. +... .. .........+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 4446789999999964 33 556666556677799999999887 3 3478899999973 3221 11 1111122345
Q ss_pred EEEEcCCceEEEe-cCCeEEEEECCC-C---eeeEEeecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCCCCceeE--
Q 014104 198 CMRYFDPEAVVGC-EDGTARVFDMYS-R---KCSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA-- 268 (430)
Q Consensus 198 ~~~~~~~~l~~~~-~dg~i~vwd~~~-~---~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~~~~~~~-- 268 (430)
.+.+.+..+++++ .++.|.+|++.+ + +.+..+. +......++++|+ ++++ +...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 5666677766665 488999999864 2 2233332 2234667888976 5554 55567999999997633221
Q ss_pred ---EEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCC--C--ceeeeeecCC------CceEEEEEeeCCCCeEE
Q 014104 269 ---TLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRT--M--KSLWETRISP------NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 269 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~------~~v~~l~~~s~~~~~l~ 334 (430)
............++|+|+|++++++.. ++.|.+|++.. + +.+..+..+. .....+. ++|++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~-~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH-ITPDGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE-ECCCCCEEE
Confidence 111112345788999999999988876 89999999973 2 2233332211 1223576 899999999
Q ss_pred EEc-CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE
Q 014104 335 VGG-IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT 411 (430)
Q Consensus 335 s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t 411 (430)
++. .++.|.+|++.......++..+.. .+ .....+++ ||++|++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~-------------------------------~~--~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQP-------------------------------TE--TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEe-------------------------------cc--ccCCceEECCCCCEEEE
Confidence 886 478999999965432222221111 00 01223444 6888776
Q ss_pred eeC-CCeEEEEEecC
Q 014104 412 THN-SKYIRLWKFNY 425 (430)
Q Consensus 412 ~~~-Dg~v~vw~~~~ 425 (430)
++. +++|.+|+++.
T Consensus 291 a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 AGQKSHHISVYEIDG 305 (330)
T ss_pred EEccCCcEEEEEEcC
Confidence 664 89999998853
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=139.52 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=134.4
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec--CCCEEE-EEeCCeEEEEEcCCCccc----ccCCCCceee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF--DESKIV-GLIGTRICIWRRNGLRSV----FPSREGTFMK 195 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~ 195 (430)
.+|++-..|.|++||..+++.+..++++ .....+.|.. .+..+. ++.||+|++||+...... +..+.+. .
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~--~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT--P 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC--c
Confidence 6888889999999999999999999986 4455577766 344555 899999999999876532 2222222 2
Q ss_pred eeEEEE--cCCceEEEe----cCCeEEEEECCCCee-eEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc
Q 014104 196 GLCMRY--FDPEAVVGC----EDGTARVFDMYSRKC-SQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 196 ~~~~~~--~~~~l~~~~----~dg~i~vwd~~~~~~-~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~ 265 (430)
..|+.. .+..+++|. .+-.|.+||++..+. +.. ...|.+.|+++.|+|. +++++||.||-|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 344443 333355554 367899999987765 443 4579999999999975 899999999999999987542
Q ss_pred ----eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCc
Q 014104 266 ----RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 266 ----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+..+. +...|.++.|..++ +.+.+-+..++..+|++..+.
T Consensus 200 EeDaL~~viN--~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 200 EEDALLHVIN--HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred chhhHHHhhc--ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 234444 56679999998776 357777888889999987664
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=140.72 Aligned_cols=297 Identities=11% Similarity=0.112 Sum_probs=198.3
Q ss_pred EEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCC------CeeEEeeecC--CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 107 QWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEG------YKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~------~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
-+.+|.+.|+++.|++ + +|++|+.|..+++|+++. .+++.....| ..+.+++|...+..++ +..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4678999999999954 4 999999999999999763 2444444444 3466688888888888 88899999
Q ss_pred EEEcCCCcccccC-CCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCe-ee--EEeecCCCCeEEEEecCC--CEE
Q 014104 176 IWRRNGLRSVFPS-REGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CS--QIIRMHCAPVTSLSLSED--QLI 247 (430)
Q Consensus 176 vwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~~~~~i~~~~~~~~--~~l 247 (430)
.-|+++.+.+... +... .+..+...+..+.+++.+.++.|.+||.+..+ .+ ...........++.|+|. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 9999998865433 2222 23344455556669999999999999997654 22 222234456788999985 689
Q ss_pred EEEeCCCeEEEEeCCCCce-eEEEec--CC---CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCC---
Q 014104 248 ISGSSLGSIAISGLSSDQR-VATLRS--TD---CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISP--- 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~-~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~--- 317 (430)
++++..+-+-+||++..+. +....+ .. ...-+.+.|+|+|+.|.+--....-.+||+-+.++ +..+....
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 9999999999999985432 111111 01 11236789999999888765555566788876443 33332111
Q ss_pred ---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE--EeccCcceeeeccCCceEEEeecccccCCcc---cc
Q 014104 318 ---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC--VMDIGSASSSSNKVSGVIERNEGRRLSAGCC---ID 389 (430)
Q Consensus 318 ---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~---~~ 389 (430)
..+.+++ |- +...+++|+.+-.|++|.+.......-+ .+|.. ...+...- -.
T Consensus 291 ~N~~T~KS~~-F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~------------------~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 291 CNIKTIKSMT-FI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE------------------EEMPSEIFIEKEL 350 (609)
T ss_pred eeeeeeeeee-ee-cceeeeccCcccceEEEecCCCccccCccccCcch------------------hhCchhheeccee
Confidence 2355565 53 4456999999999999998743222111 11111 00111100 11
Q ss_pred cCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 390 RIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
....+|++.++.|.|+ ..+|++.|....+++|.-
T Consensus 351 ~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 351 TVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEEecccccccceeecCCcceEeccchhhheecccc
Confidence 2247899999999995 667889999999999963
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.6e-17 Score=142.61 Aligned_cols=242 Identities=17% Similarity=0.155 Sum_probs=176.0
Q ss_pred eEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCCeeEEeeec--C-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCVEEYSL--P-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.+..+..|.++|.++.|+ .+ .+++.|.||+|+.=|++++..-..+.. . .....+.|+.+...++ +..=|.+.+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence 466788999999999993 33 999999999999999987644333332 2 1223366666666555 666679999
Q ss_pred EEcCCCcc---cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC-CEE
Q 014104 177 WRRNGLRS---VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 177 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
||..++.. .+..+.. .+..+.+.+..+. +++++.|++.+|||++.-. ++.....|...|.++.|+|. ..+
T Consensus 306 iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKK-KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred EEeecCCccchhhhhhhc-ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence 99987654 2333444 3344556665565 9999999999999997532 22333469999999999985 569
Q ss_pred EEEeCCCeEEEEeCC----CCceeEEEecCCCC------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 014104 248 ISGSSLGSIAISGLS----SDQRVATLRSTDCT------GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
++.+.|..|+|||.. .-.+...+. |.. ......|.|+..++++|-.-..|-|+|-..++.+.++....
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred EeeccCCceEEeecccccccCCccceee--ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 999999999999983 333344444 222 34456899999999999999999999999888787755443
Q ss_pred -CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcC
Q 014104 318 -NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQN 348 (430)
Q Consensus 318 -~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~ 348 (430)
..|.++..++|-+..+++| +..|.|+||--+
T Consensus 463 ~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccceeecccccceeccCCccceEEEEecC
Confidence 4777777799988845554 577899998654
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=134.30 Aligned_cols=233 Identities=16% Similarity=0.184 Sum_probs=166.5
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc--cCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
..+.++.|..+++.+.+...|.+.+|++.+.+... ....... +..+.... ..+.+-+.|+.+.+|++..+..+..
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~--it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i 92 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLF--ITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI 92 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccce--eeceeecCCcchhhcCCCceEEEEEccCcceEEE
Confidence 55667778778776669999999999999887543 3233322 23333322 3488889999999998865321110
Q ss_pred -------------------------e----------------------------ecCCCCeEEEEecC--C--CEEEEEe
Q 014104 229 -------------------------I----------------------------RMHCAPVTSLSLSE--D--QLIISGS 251 (430)
Q Consensus 229 -------------------------~----------------------------~~~~~~i~~~~~~~--~--~~l~~~~ 251 (430)
+ .+..+.+++..+.- + -++++|.
T Consensus 93 ~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGy 172 (323)
T KOG0322|consen 93 HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGY 172 (323)
T ss_pred eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEec
Confidence 0 01234566666542 2 2677788
Q ss_pred CCCeEEEEeCCCCceeEEEec---------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ce--eeeeecCCC
Q 014104 252 SLGSIAISGLSSDQRVATLRS---------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KS--LWETRISPN 318 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~ 318 (430)
++|.+.+||+.++..+-.++. .|..+|.++.|.+.-..=++|+.+..+..|++... .+ ..++....-
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 999999999998844333321 37789999999887666778888888999988642 22 223333345
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
.|..+. +-||++.++|++.|+.|+||+.++..++..++.|. +.
T Consensus 253 Gv~gvr-IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs------------------------------------ag 295 (323)
T KOG0322|consen 253 GVSGVR-IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS------------------------------------AG 295 (323)
T ss_pred CccceE-EccCCcEEeecccCCcEEEEEeccCCchhhhhhhh------------------------------------cc
Confidence 677787 88999999999999999999999999999887654 47
Q ss_pred eeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 399 ITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 399 v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
|++++|+ .+.+++||.|++|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 8888883 467999999999999986
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=125.03 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=142.9
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCC---------cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGL---------RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
.+..-+++|.+++++ +..+|.|.+..++.- +........+...+..+.+.+..|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 344567889999988 888999999987641 11222223333444566666555666665 9999987543
Q ss_pred Cee------eEE--eecC-----CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 223 RKC------SQI--IRMH-----CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 223 ~~~------~~~--~~~~-----~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
... +.. ...| -..|++|...|. +.++.++.|+.++-||+++|+..+.+++ |...|.++.--....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc
Confidence 211 111 1112 236788888875 6666777899999999999999999998 899999998844455
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeeecC---------C-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 289 LVFAGTTAGYASCWDLRTMKSLWETRIS---------P-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.+++|++||++++||.++++.+..+... . ..|-+++ -+..+|++|+ ...+.+|++++.++...+..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCCceEEEec
Confidence 6889999999999999999888765432 2 3455555 4667888776 45799999999998888764
No 181
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.1e-18 Score=148.57 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=168.9
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
+...+.++.+|+.++ ++..|.+..+|..++...+...-...+..+.+......++++ ....++|||- .|..++.++.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 456688999999988 999999999999998876665555444444444444445544 4568999994 7888888885
Q ss_pred CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
| ..|..+.|-|. -+|++++..|.++.-|+.+|+.+..+.. ..+.+..|+-+|-...+-+|...|+|.+|.....+++
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 5 57889999998 4677788899999999999999999887 6678999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+..|.++|.+++ +.++|+|++|.+.|..++|||+++-..+.++..
T Consensus 287 vKiLcH~g~V~siA-v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 287 VKILCHRGPVSSIA-VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHHHhcCCCcceEE-ECCCCcEEeecccccceeEeeeccccccceeec
Confidence 99999999999999 999999999999999999999998776666554
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=5.1e-16 Score=144.61 Aligned_cols=256 Identities=15% Similarity=0.141 Sum_probs=181.0
Q ss_pred CCeEEEEecCCC-eeEEeeecCCceeEEEEec-CCCEEE-EEeCCeEEEEEcCCCcccc-----cCCCCcee--eeeEEE
Q 014104 131 DKVMRLWSLEGY-KCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVF-----PSREGTFM--KGLCMR 200 (430)
Q Consensus 131 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~~~~-----~~~~~~~~--~~~~~~ 200 (430)
++.+.+|++... .....+.....+.++.|+| ++..++ |+.+|+|.+||+..+.... .....+.. ..+.+.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 358999999875 5667777888899999998 555666 7889999999998766421 11112222 223333
Q ss_pred EcCC--ceEEEecCCeEEEEECCCCee-eE-----Eee------cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeC---
Q 014104 201 YFDP--EAVVGCEDGTARVFDMYSRKC-SQ-----IIR------MHCAPVTSLSLSED--QLIISGSSLGSIAISGL--- 261 (430)
Q Consensus 201 ~~~~--~l~~~~~dg~i~vwd~~~~~~-~~-----~~~------~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~--- 261 (430)
.... .+++++.||.|..|+++--.. .. ... .....+++++|.+. ..++.|+++|.|..=+-
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3322 399999999999998764321 11 111 11236789999864 68999999999887332
Q ss_pred CCCc-----eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCC-eEE
Q 014104 262 SSDQ-----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTS-TLV 334 (430)
Q Consensus 262 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~ 334 (430)
+.+. ....+. .|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++ |||... .++
T Consensus 381 ~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va-WSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA-WSPTRPAVFA 458 (555)
T ss_pred ccccccccccccccc-ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE-EcCcCceEEE
Confidence 2222 111222 377899999999988766655559999999988 7788888888888899999 998765 667
Q ss_pred EEcCCCeEEEEEcCCC--ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 335 VGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
++..||.|.+||+... .++.+...+ ....+.+.+ +|+.|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~------------------------------------~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVC------------------------------------SPALTRVRWSPNGKLLA 502 (555)
T ss_pred EEcCCCceehhhhhccccCCccccccc------------------------------------ccccceeecCCCCcEEE
Confidence 7888999999999743 233333321 234555666 478899
Q ss_pred EeeCCCeEEEEEec
Q 014104 411 TTHNSKYIRLWKFN 424 (430)
Q Consensus 411 t~~~Dg~v~vw~~~ 424 (430)
.|+..|++.+|++.
T Consensus 503 vGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 503 VGDANGTTHILKLS 516 (555)
T ss_pred EecCCCcEEEEEcC
Confidence 99999999999985
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.3e-14 Score=134.92 Aligned_cols=285 Identities=24% Similarity=0.344 Sum_probs=208.5
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCC-EEEE-EeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDES-KIVG-LIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~-~~~~~i~ 175 (430)
......+.+|...|.++.| +++ .+++++. |+.+++|+...+..+..+..+ ..+..+++++++. .+++ +.|+.+.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 4677889999999999999 555 7888875 999999999988888888875 5577799999988 4444 7899999
Q ss_pred EEEcCCCcccccCCCCceee-eeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecC-CCEEEEEeC
Q 014104 176 IWRRNGLRSVFPSREGTFMK-GLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSE-DQLIISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~-~~~l~~~~~ 252 (430)
+||...+........++... ...+.+.+..+++++.|+.+++||+..... +..+..|...+.++.+.| +..+++++.
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 99888555332122222111 225666666688999999999999987664 445567889999999998 467777888
Q ss_pred CCeEEEEeCCCCceeEEEe-cCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 253 LGSIAISGLSSDQRVATLR-STDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
|+.+.+||..+........ ..|...+..+.+.+++..++.+ ..|+.+.+|+............. ..+..+. +++ .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~ 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS-FSP-D 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEE-ECC-C
Confidence 8999999998887766665 2266679999994332556555 67889999999887733333322 2277787 666 4
Q ss_pred CeEEE-EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 331 STLVV-GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 331 ~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
..++. +..++.+.+|+............+. ..+....+ ++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~ 425 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT------------------------------------SRVTSLDFSPDGK 425 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC------------------------------------CcEEEEEECCCCc
Confidence 44444 6889999999999877766655321 24444444 467
Q ss_pred EEEEeeCCCeEEEEEecC
Q 014104 408 KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~~~~ 425 (430)
.+++++.++.+++|+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCcEEEEeccC
Confidence 788889999999999865
No 184
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=9.3e-16 Score=126.67 Aligned_cols=196 Identities=12% Similarity=0.226 Sum_probs=142.2
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCC----eeeEEeecCCCCeEEEEec-C--CCEEEEEeCCCeEEEEeCCCC--
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLS-E--DQLIISGSSLGSIAISGLSSD-- 264 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~~-~--~~~l~~~~~dg~i~vwd~~~~-- 264 (430)
+..+.+.+.|..+++++.|++++|||.... .+....+.|.+.|..+.|. | ++.+++++.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 445666677888999999999999996543 4566778999999999998 5 489999999999999975211
Q ss_pred -------ceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC------ceeeeee-------cCCCceEE
Q 014104 265 -------QRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM------KSLWETR-------ISPNVVYS 322 (430)
Q Consensus 265 -------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------~~~~~v~~ 322 (430)
....++.. ....|+.+.|.|. |-.|++++.||.++||+.... .+..++. .+..+..|
T Consensus 96 ~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred ccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 12334443 5668999999985 568999999999999987542 2223333 34566778
Q ss_pred EEEeeCC---CCeEEEEcCC-----CeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 323 LQHLQND---TSTLVVGGID-----GVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 323 l~~~s~~---~~~l~s~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
+. |+|. .++|+.|+.+ +.++||....+. ...... .+ .
T Consensus 175 vs-Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva--------------------------------~L-~ 220 (361)
T KOG2445|consen 175 VS-WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA--------------------------------EL-P 220 (361)
T ss_pred Ee-eccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh--------------------------------hc-C
Confidence 87 6654 3578888765 478888765432 222111 12 2
Q ss_pred CCCCCeeEEEEc------CeEEEEeeCCCeEEEEEecC
Q 014104 394 TIRPPITCLAVG------MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 394 ~h~~~v~~v~~~------~~~l~t~~~Dg~v~vw~~~~ 425 (430)
+|..+|+.++|. -..|++|+.|| |+||.+..
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 578899999993 34689999999 99999974
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=5.5e-17 Score=134.99 Aligned_cols=224 Identities=16% Similarity=0.223 Sum_probs=155.6
Q ss_pred cccceeEEEe----cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 111 HSVGVDQCRM----KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 111 h~~~v~~~~~----~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
|...-..+++ .. + ++|.|+.-|.|+|.|+.++++...+.+|+. +.-+.+.|+...
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q------------------ 149 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ------------------ 149 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCc------------------
Confidence 5555666665 22 3 888888889999999988888888877633 333555544322
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC-CCEEEEEeCCCeEEEE
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE-DQLIISGSSLGSIAIS 259 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vw 259 (430)
.+++++.|.+|++|++++..++..+ .+|.+.|.++.|+. +..+++++.|.++++|
T Consensus 150 ---------------------lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 150 ---------------------LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLW 208 (385)
T ss_pred ---------------------EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEE
Confidence 2889999999999999999998776 57999999999995 4899999999999999
Q ss_pred eCCCCceeEEE---------------------------ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC-CCCce--
Q 014104 260 GLSSDQRVATL---------------------------RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL-RTMKS-- 309 (430)
Q Consensus 260 d~~~~~~~~~~---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~-- 309 (430)
++...+....+ ..-|...|.|+.| -|+++++=+-++.|..|.. +-.+.
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhh
Confidence 99843221111 1124456666666 4688998888899999987 22221
Q ss_pred -----------eeeeecCCCceEEEE-EeeCCCCeEEEEcCCCeEEEEEcCCCceE--EEEEe--ccCcceeeeccCCce
Q 014104 310 -----------LWETRISPNVVYSLQ-HLQNDTSTLVVGGIDGVLRVLDQNTGEVL--SRCVM--DIGSASSSSNKVSGV 373 (430)
Q Consensus 310 -----------~~~~~~~~~~v~~l~-~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~--~~~~~~~~~~s~d~~ 373 (430)
+.++......++-+. .|.|-++.||.|...|.|++||+++.++. .++.. ....+...++|.||.
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 223333334455554 15666789999999999999999976652 12221 122345667777776
Q ss_pred EE
Q 014104 374 IE 375 (430)
Q Consensus 374 v~ 375 (430)
+.
T Consensus 367 ~l 368 (385)
T KOG1034|consen 367 IL 368 (385)
T ss_pred EE
Confidence 54
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.8e-16 Score=150.54 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=169.7
Q ss_pred cceeEEEe-c--CC-eEEEEeCCCeEEEEecC-C----CeeEEeee-------c-CCceeEEEEecCCCEEE-EEeCCeE
Q 014104 113 VGVDQCRM-K--RG-LILTGVGDKVMRLWSLE-G----YKCVEEYS-------L-PNAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 113 ~~v~~~~~-~--~~-~l~s~~~dg~i~iwd~~-~----~~~~~~~~-------~-~~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
..|+.+.+ + |. ++++|+.||.||||+-. + .+.+..+. + .+....+.|.....+|+ ++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 46888888 2 22 99999999999999632 2 23332222 1 12335567777777777 5556889
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEc---CCceEEEecCCeEEEEECCCCe---eeEEeecCCCC--eEEEEecC-C-
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAP--VTSLSLSE-D- 244 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~--i~~~~~~~-~- 244 (430)
+|||............+....+.+++.+ ++.+++|..||.|++||.+... .+...+.|+.. |..+.+.+ +
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998876554444443334444443 3449999999999999987543 56777888887 99999986 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeE--EEecCC--CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC----
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVA--TLRSTD--CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS---- 316 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 316 (430)
..+++|+.||.|++||++...... ++..+. .+..+++..++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 579999999999999999742221 222211 224999999999999999998 899999997 4444443322
Q ss_pred ---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 317 ---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 317 ---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+.+.+++ |+|..-++++|+.|.+|.||.....
T Consensus 1348 ~q~~gs~scL~-FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLA-FHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceee-ecchhHhhhhccCCceEEEeecCCc
Confidence 25678998 9999999999999999999987644
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=140.21 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=153.9
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC---ceeeeeEEEE-------cCCceEEEecCCeEEEEECCCCeeeE
Q 014104 158 DFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG---TFMKGLCMRY-------FDPEAVVGCEDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 158 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~ 227 (430)
..+-.|++|+-.....+.+|+..++..+...... .....+|-.+ .+-.+++|-.-|.|.+.|....+..+
T Consensus 130 ~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 130 NQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred cccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHH
Confidence 3444667777777788889988754322111100 0011122111 22238899999999999976532221
Q ss_pred Eee----cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC--------------Cce--------------eEEEecC
Q 014104 228 IIR----MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS--------------DQR--------------VATLRST 273 (430)
Q Consensus 228 ~~~----~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~--------------~~~--------------~~~~~~~ 273 (430)
.+. ..+..|+++.|-|+ ..++.+-.+|.+.++|..- +.. +..+.-
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~- 288 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI- 288 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-
Confidence 111 12468999999975 6888889999999997531 111 111111
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+.|...+|+|||++||+.+.||.++|||..+.+++..++..-+...|++ |||||+||++|++|..|.||.+..++.+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc-WSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC-WSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE-EcCCccEEEecCCcceEEEEEeccceEE
Confidence 224788999999999999999999999999999998888887788999998 9999999999999999999999999999
Q ss_pred EEEEeccCcceeeeccC
Q 014104 354 SRCVMDIGSASSSSNKV 370 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~ 370 (430)
..-.+|...+..+++.+
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 99999999988888874
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=139.74 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=166.5
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
++.++.||.+.+.+ +.++..+.+..|.+.+.+-.|+|+ .-++++++||.|++|. ++|-...++.. ...+|+|++|.
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q-~~~~v~c~~W~ 154 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ-NEESIRCARWA 154 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh-cCceeEEEEEC
Confidence 88899999999988 467888889999999999999976 6799999999999999 56666555544 56699999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcce
Q 014104 285 PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSAS 364 (430)
Q Consensus 285 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 364 (430)
|+.+.++-+ ..+.+.|=.+.....+...+.|.+-|.++. |++....+++|+.|-..++||-. |..+.+-..|...++
T Consensus 155 p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~-W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 155 PNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLS-WSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEee-cCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 998766554 345688878887777788999999999999 99999999999999999999976 888888889999999
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEE
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRL 420 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~v 420 (430)
.+++.+|....++..... ++.+...+.|..++| ||..++.|...|.|.+
T Consensus 232 Sva~npd~~~~v~S~nt~-------R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 232 SVAFNPEKDYLLWSYNTA-------RFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeccccceeeeeeeee-------eecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999954444433322 133445678999999 7999999999988754
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=7.6e-16 Score=139.64 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=194.0
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.|..++| ||| .|+.+. +..+.+||.+.|..+.++++| +.+.+++++.||+.++ |+.|..|.+|+..-.-.+...|
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 7889999 788 444433 347999999999999999987 6788899999999999 8999999999987655555555
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
...+ ..+.+.+....+++++-+ ..-+|...... +...+ ....+.+++|.. +.+++.|-.+|+|.+-+- +++...
T Consensus 93 ~D~I-QCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 93 NDAI-QCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred CCee-eEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 4442 333334444457777764 57788865433 22222 245788889985 489999999999999874 455544
Q ss_pred EEe--cCCCCCeEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 269 TLR--STDCTGIKTLCYNPCS-----RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 269 ~~~--~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
.+. ++...+|.+++|+|+. ..+++.....++.+|.+. |+.+..-+.-.-...|+. +-++|.+++.|+.|+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis-Yf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS-YFTNGEYILLGGSDKQ 245 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe-eccCCcEEEEccCCCc
Confidence 443 3356699999999964 478888888888888876 555542222223345677 6689999999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIR 419 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~ 419 (430)
+++|-. .|-.+.++...+ ..|+.|+. ++++++.|+.||+|-
T Consensus 246 L~~fTR-~GvrLGTvg~~D------------------------------------~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 246 LSLFTR-DGVRLGTVGEQD------------------------------------SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred eEEEee-cCeEEeeccccc------------------------------------eeEEEEEEccCCceEEEEEccCeee
Confidence 999974 476666664322 37888777 688899999999998
Q ss_pred EEEec
Q 014104 420 LWKFN 424 (430)
Q Consensus 420 vw~~~ 424 (430)
-|++-
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 77764
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.2e-17 Score=142.82 Aligned_cols=192 Identities=18% Similarity=0.298 Sum_probs=143.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCC--------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC---
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYS--------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--- 264 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--- 264 (430)
..+.+..+.+++++.||++.+|+++. -+++.++.+|.++|.|+++.++ +.+++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 33444556699999999999999932 2478899999999999999865 89999999999999965421
Q ss_pred -------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecC-------------------
Q 014104 265 -------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRIS------------------- 316 (430)
Q Consensus 265 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~------------------- 316 (430)
.....+.+ |.+.|..+++++....|++++.||++++|+.....+ ...-..|
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 12344555 888999999999999999999999999999865433 1000000
Q ss_pred ------------------------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceee
Q 014104 317 ------------------------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSS 366 (430)
Q Consensus 317 ------------------------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 366 (430)
...+.-+. ..|.+...+++..|+.|+++|..+++++.....|
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV-s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~------- 530 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV-SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH------- 530 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEE-ecCCCCeeEecccCCceecccccccccchheeec-------
Confidence 01133333 5566666677777777777777777776666554
Q ss_pred eccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 367 SNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 367 ~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...++++++ +|.+|++++.||.|++|.++..
T Consensus 531 -----------------------------~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 531 -----------------------------KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -----------------------------cceecceeecCCCceEEeecCCceeehhhccch
Confidence 448899988 5889999999999999998643
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.9e-17 Score=153.30 Aligned_cols=226 Identities=18% Similarity=0.257 Sum_probs=165.2
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
++.|.||.++|+|+.|+ .| ++++|+.|..++||..+++.++....+|.+. .-++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-------------------- 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-------------------- 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch--------------------
Confidence 44678999999999995 44 9999999999999999999999988887432 2233222
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGL 261 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~ 261 (430)
..-.+++++.|..|++|-+.++.++..+.+|++.|++++|+|-. +.+.||++++||.
T Consensus 243 --------------------~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 243 --------------------NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDA 299 (1113)
T ss_pred --------------------hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccc
Confidence 22237889999999999999999999999999999999999853 7789999999998
Q ss_pred CCCceeEE--------------Eec----------C-----CCCCeEEEEEecCCCEE-----------EEEeCCCeEEE
Q 014104 262 SSDQRVAT--------------LRS----------T-----DCTGIKTLCYNPCSRLV-----------FAGTTAGYASC 301 (430)
Q Consensus 262 ~~~~~~~~--------------~~~----------~-----~~~~v~~~~~~~~~~~l-----------~~~~~dg~i~i 301 (430)
+-.-.+.. +.. . ....+.++++..++-.+ +++-.+-.+++
T Consensus 300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeee
Confidence 71111000 000 0 00012222222222222 23334456888
Q ss_pred EeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 302 WDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 302 ~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
|++.++.+++.+.+|...++.+. ++|-+. ...+++.||...|||+-.|.+++.+........-..+|+||+-
T Consensus 380 wnl~~g~l~H~l~ghsd~~yvLd-~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHSDEVYVLD-VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS 452 (1113)
T ss_pred eecccchhhhhhcccccceeeee-ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence 99999999999999999999999 777555 5578899999999999999988887765555555667777764
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=1.2e-15 Score=130.58 Aligned_cols=278 Identities=16% Similarity=0.174 Sum_probs=188.3
Q ss_pred ccceeEEEecC--C-eEEEEeCCCeEEEEecCCCee---------EEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 112 SVGVDQCRMKR--G-LILTGVGDKVMRLWSLEGYKC---------VEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 112 ~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
..+|.++.|.. . .++||+.|..|++|-++.++. +..+.. +..+.++.|+|+|+.|+ ++.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45789999832 2 899999999999998754321 223333 36688899999999999 7788999999
Q ss_pred EcC--------C-----Cc--c---cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 178 RRN--------G-----LR--S---VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 178 d~~--------~-----~~--~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
... + .+ . +...+... ...++|.+++..+++++.|.++++||+..|+.+..+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-iydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-IYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccc-hhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 877 2 10 0 11222222 2346777788889999999999999999999999999999999999
Q ss_pred EecC-CCEEEEEeCCCeEEEEeCCCCceeEEEe-----c----C---------CC----CCeEEEEEecCCCEEEEEeC-
Q 014104 240 SLSE-DQLIISGSSLGSIAISGLSSDQRVATLR-----S----T---------DC----TGIKTLCYNPCSRLVFAGTT- 295 (430)
Q Consensus 240 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~----~---------~~----~~v~~~~~~~~~~~l~~~~~- 295 (430)
+|.| ++++++-+.|...+.+.+...+.+.... . + |+ .-...++|+|+|.+|++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9997 4888888888877777766544332221 0 0 11 12456789999999887532
Q ss_pred ---CC-----eEEEEeCCC-CceeeeeecCCCceEEEEEee------------------CCCCeEEEEcCCCeEEEEEcC
Q 014104 296 ---AG-----YASCWDLRT-MKSLWETRISPNVVYSLQHLQ------------------NDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 296 ---dg-----~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s------------------~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+ ..++|+-.. .++...+.+...+...+. ++ |-+-.++.+ ..+.|++||.+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq 329 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQ 329 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEE-eeeeEEEeccccccccccccccceEEEEe-ecceEEEeccc
Confidence 22 345554432 233333333322222222 11 222233444 45679999998
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.+++..... -|-..|+.++| ||..++..|.||...+--++..
T Consensus 330 ~~~P~~~v~n-----------------------------------ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 330 TLEPLAVVDN-----------------------------------IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cccceEEEee-----------------------------------eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 8777766542 35678999999 5788999999998877666554
Q ss_pred C
Q 014104 427 D 427 (430)
Q Consensus 427 ~ 427 (430)
|
T Consensus 375 e 375 (434)
T KOG1009|consen 375 E 375 (434)
T ss_pred h
Confidence 3
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=2.6e-15 Score=123.12 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=172.4
Q ss_pred eEEEEeccccceeEEEec---C-C-eEEEEeC----CCeEEEEe--cCCCeeEEe--eecCCceeEEEEecCCC----EE
Q 014104 104 DIDQWKAHSVGVDQCRMK---R-G-LILTGVG----DKVMRLWS--LEGYKCVEE--YSLPNAASLVDFDFDES----KI 166 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~---~-~-~l~s~~~----dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~~~~----~l 166 (430)
.+..+..+ -+++++.|+ + + +|+.|+. ...|.|-. .++++.+.. |.++-.+.-+.|.|+.. .+
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 45555544 356777773 2 3 8888876 34565553 345555543 34455566688998764 35
Q ss_pred EEEeCCeEEEEEcCCCcc------cccC----CCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee---eEEeecC
Q 014104 167 VGLIGTRICIWRRNGLRS------VFPS----REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMH 232 (430)
Q Consensus 167 ~~~~~~~i~vwd~~~~~~------~~~~----~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~---~~~~~~~ 232 (430)
+++.+..+++|.+...+. .+.. +.......+.|....+. +.+++-|-+..|||++++.. ...+-.|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 688888999999875321 1111 11122333444444444 88999999999999998733 4456689
Q ss_pred CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe-cCC-CCCeEEEEEecCC-CEEEEEeC-CCeEEEEeCCC
Q 014104 233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR-STD-CTGIKTLCYNPCS-RLVFAGTT-AGYASCWDLRT 306 (430)
Q Consensus 233 ~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~~l~~~~~-dg~i~i~d~~~ 306 (430)
..+|..++|..+ +.|++.+.||+|++||++..+.-..+. ... ..+...++|+++. +++|+-.. ...|.|.|++.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 999999999964 799999999999999999765433332 222 3478889998754 56665444 45699999997
Q ss_pred -CceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCC
Q 014104 307 -MKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 307 -~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~ 349 (430)
..++.++++|.+.|++++ |.|. ...|++++.|..+.+||+.+
T Consensus 276 P~tpva~L~~H~a~VNgIa-WaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIA-WAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceE-ecCCCCceeeecCCcceEEEEeccc
Confidence 567889999999999999 6664 56899999999999999974
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.7e-15 Score=139.77 Aligned_cols=235 Identities=17% Similarity=0.195 Sum_probs=164.7
Q ss_pred ccceeEEEec---CCeEEEEeCCCeEEEEecCCCee--EEeee-----cCCceeEEEEecCCCE--EE-EEeCCeEEEEE
Q 014104 112 SVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKC--VEEYS-----LPNAASLVDFDFDESK--IV-GLIGTRICIWR 178 (430)
Q Consensus 112 ~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~--l~-~~~~~~i~vwd 178 (430)
...|+|+.|. ..+++.|..+|.|.+||+..+.. ...+. +...+..+.|..+... ++ ++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4578899883 33999999999999999987654 22222 2344555666554333 55 88899999998
Q ss_pred cCCCccc-----cc--------CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC---e-----eeEEeecCCCCe
Q 014104 179 RNGLRSV-----FP--------SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR---K-----CSQIIRMHCAPV 236 (430)
Q Consensus 179 ~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~---~-----~~~~~~~~~~~i 236 (430)
++.-... .. .........+.+.+..+. +++|++.|.|.--+.... . ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7743210 00 111222334455555555 999999999987433221 1 133555688999
Q ss_pred EEEEecC-C-CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC--Ccee
Q 014104 237 TSLSLSE-D-QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT--MKSL 310 (430)
Q Consensus 237 ~~~~~~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~ 310 (430)
+++.++| . ..+++++ |.+|++|... ...++..+.. +...|++++|||... .|+++..||.+.+||+.. ..++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 9999997 2 5666666 9999999987 6666766665 566799999999875 566788899999999975 3455
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.....+....+.+. +++.|+.|++|...|.+++|++..
T Consensus 480 ~s~~~~~~~l~~~~-~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVCSPALTRVR-WSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccccceee-cCCCCcEEEEecCCCcEEEEEcCc
Confidence 55555544444454 889999999999999999999963
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.7e-15 Score=127.78 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=145.5
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS- 272 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 272 (430)
.++++..++..+++++.||++++|+..+...+.....|.+.|.++.|+|+ .++++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 45777777778999999999999998788777788889999999999987 699999998 999999999977766552
Q ss_pred CCCCCeEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 273 TDCTGIKTLCYNPCS-----RLVFAGTTAGYASCWDLRTMKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
..+.....+.|+.++ ..++....-+.|..||+...+- ..........|.+++ .+++|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccCCcE
Confidence 233366777888776 2333334455677777653221 111122235799999 99999999999999999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRL 420 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~v 420 (430)
-|++..+-++++-.+ ..|...|+.+.| |.+++++.+.|....|
T Consensus 306 ai~~~~~lq~~~~vk-----------------------------------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVK-----------------------------------EAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeeh-----------------------------------hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999998777666554 356667788777 5677777777777777
Q ss_pred EEecC
Q 014104 421 WKFNY 425 (430)
Q Consensus 421 w~~~~ 425 (430)
-.+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 76654
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.3e-15 Score=134.85 Aligned_cols=258 Identities=9% Similarity=0.038 Sum_probs=186.1
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS 222 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~ 222 (430)
..+.+| +.+.+++..|.|..|+ |+.||++++|.+.+++.+........+..++|.+.+.. +++++....+.+.+..-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 345565 4567799999999999 89999999999999998877766667777888877766 44444444577777655
Q ss_pred CeeeEEeecCCCCeEEEEecCCCEEEEE----eCCCeEEEEeCCCCc-----eeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLSEDQLIISG----SSLGSIAISGLSSDQ-----RVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
|..+..... ...|+++ ..++.+..|.-...+ ....+. |...|..|.|+..|.+|++.
T Consensus 474 G~~~e~~~t------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~--~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 474 GDRLEVGPT------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK--HPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred cchhhhcch------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEe--cCCccceeeeecCCceEEEe
Confidence 532211110 0112222 234567777644211 112333 78899999999999999987
Q ss_pred eCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----------ceEEEEEecc
Q 014104 294 TTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG----------EVLSRCVMDI 360 (430)
Q Consensus 294 ~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~ 360 (430)
..+ ..|.|+++...+....|+...+.|..+. |+|...+|++++ ...|++||+..+ +.+..+..|+
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~-FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVK-FHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEE-ecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 654 4699999987666666666668888998 999999998886 467999999743 4577888899
Q ss_pred CcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeE--EEEeeCCCeEEEEE
Q 014104 361 GSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKK--VVTTHNSKYIRLWK 422 (430)
Q Consensus 361 ~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--l~t~~~Dg~v~vw~ 422 (430)
.+-.++.++.|+.+..++. .-+.+.......|...+++|+|++++ +++|+.||++.|+-
T Consensus 618 ~GDnli~gs~d~k~~WfDl---dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDL---DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeEEEecCCCeeEEEEc---ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999999999865443 22233444456799999999998765 89999999999874
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=5.4e-17 Score=140.95 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=183.2
Q ss_pred eEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCce
Q 014104 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTF 193 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~ 193 (430)
+.+.+ .+| +++.|+.-|.|..+|..++++...+...+.+..+.|-.+.++++.+....++|||-.+-+.-.......
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~- 211 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR- 211 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-
Confidence 44556 355 899999999999999999999999998889999999999999999999999999988766322211111
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+.-+.+.+.+-.|++++..|.++.-|+.+|+.+..+..-.+.+..|+-+|- ..+-+|...|+|.+|.....+++..+..
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc 291 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC 291 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence 223445555556999999999999999999999999888889999999985 6788899999999999999998888876
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
|.++|.++++.++|++++|.+.|..++|||+++...+.++.. ......++ +|..| +++.+....|.||.
T Consensus 292 -H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls-~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 292 -HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLS-LSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred -cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccc-ccccc--ceeeecCCeeeeeh
Confidence 999999999999999999999999999999998776666554 33455565 65443 44455566899994
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=3.1e-14 Score=118.42 Aligned_cols=232 Identities=15% Similarity=0.233 Sum_probs=168.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCc-eEEEecC------CeEEEEECCCCeeeE
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPE-AVVGCED------GTARVFDMYSRKCSQ 227 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~d------g~i~vwd~~~~~~~~ 227 (430)
.++|+.|..-++.+.+...++|+.+.-+... ..........+.+.+-.+. .++|+.+ ..|.|||-...+++.
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 3778888888888888889999887643211 1111111333444444444 2344433 579999976777887
Q ss_pred EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEEEecCC-CCCeEEEEEecCCCEEEE-EeCCCeEEEEeC
Q 014104 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVATLRSTD-CTGIKTLCYNPCSRLVFA-GTTAGYASCWDL 304 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~ 304 (430)
++. ...+|.++.+.++.+++. .++.|.||... +.+.++.+.... ..+..+++-+.+..+||. |-.-|.|.|-|+
T Consensus 90 el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 90 ELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 776 678999999987765444 36789999987 566677666422 234544444434445553 556799999999
Q ss_pred CCCce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 305 RTMKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 305 ~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
...+. ...+.+|.+.|.+++ .+-+|..+||+|..|+ |||||..+|++++++....+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~-Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-------------------- 225 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVA-LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-------------------- 225 (346)
T ss_pred hhcCcCCceEEEcccCceeEEE-EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--------------------
Confidence 86554 467889999999999 9999999999999998 69999999999999986443
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...|.|++| +..+|+.+|+.|+|.|+.+..
T Consensus 226 --------------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 --------------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred --------------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 357999999 578899999999999999875
No 199
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=4.7e-15 Score=126.46 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=155.4
Q ss_pred EEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCee----EEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+.+..+.+++|..++..++.|++|-.+|.+.+|..+.+.. +..+..+.+...+.-++
T Consensus 98 ~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~------------------- 158 (412)
T KOG3881|consen 98 AKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTD------------------- 158 (412)
T ss_pred ccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCC-------------------
Confidence 3455667778888888899999999999999998874331 11222222222222111
Q ss_pred CCcccccCCCCceeeeeEEEEcCCc-eEEEecC--CeEEEEECCCCeeeEEeecC---------CCCeEEEEecCC---C
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPE-AVVGCED--GTARVFDMYSRKCSQIIRMH---------CAPVTSLSLSED---Q 245 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d--g~i~vwd~~~~~~~~~~~~~---------~~~i~~~~~~~~---~ 245 (430)
..+. +++|+.. ..+.+||+++.+.+..-+.- .-.++++.|-++ .
T Consensus 159 ---------------------~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 159 ---------------------TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred ---------------------CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCc
Confidence 1222 4556666 67777777766554433211 123456777643 6
Q ss_pred EEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l 323 (430)
.|++++.-+.+++||.+.++ ++..|.- ...+++++...|+|+++++|..-|.+..||++.++.+.. +.+-.+.+.++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 89999999999999998654 5666765 567999999999999999999999999999999998877 88888999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
. .+|..+++++++-|..|+|+|+.+.+++...
T Consensus 297 h-~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 297 H-CHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred E-EcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8 9999999999999999999999986665544
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=136.26 Aligned_cols=221 Identities=13% Similarity=0.058 Sum_probs=148.9
Q ss_pred CCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 204 (430)
+..|.+||.+.... ..+.. ...+....|+|||+.|+ ++.+ ..|.+||+.+++. .+....++ .....+++++.
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECCCCC
Confidence 46899999876553 33433 34567799999999998 4433 4699999988753 22222222 23467888888
Q ss_pred ceEEEe-cCCeEEE--EECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCCC-ceeEEEecCCCCCe
Q 014104 205 EAVVGC-EDGTARV--FDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSSD-QRVATLRSTDCTGI 278 (430)
Q Consensus 205 ~l~~~~-~dg~i~v--wd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~~-~~~~~~~~~~~~~v 278 (430)
.|+.++ .+|.+.+ ||+.+++. ..+..+...+....|+|+ +.++.+ ..++...+|++... .....+ . +..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC--
Confidence 777654 6776554 57666654 455567777889999987 555544 46788888876432 222333 2 332
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC--CCceEEEE
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN--TGEVLSRC 356 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~ 356 (430)
....|+|+|+.|+..+.++ +.+||+.+++.......+ ...++. |+|+|++|+.++.++.+.+|++. +|...+.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~-~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPS-ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCce-ECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 4578999999998887766 666999887654322222 234566 99999999999999988888753 57788888
Q ss_pred EeccCc
Q 014104 357 VMDIGS 362 (430)
Q Consensus 357 ~~~~~~ 362 (430)
..+.+.
T Consensus 412 ~~~~g~ 417 (429)
T PRK01742 412 PGSDGQ 417 (429)
T ss_pred cCCCCC
Confidence 765553
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4e-14 Score=126.53 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=170.4
Q ss_pred ccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
+|...-+.+.. +|| .++||..--.|++||+.+..+ .|.-| +.+...-++-|-..++ -..|..|.+-..-+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 36667778877 677 678888889999999986433 23322 2233334444544444 566666665443332
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
......+.. ...++....+-+|+.++....|+-++++.|..+..+....+.++++..++- .+|++|+.+|.|..||.
T Consensus 127 hy~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 127 HYRTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeeecCcC--CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 211111111 112333333444777777788999999999999999888899999999974 78999999999999999
Q ss_pred CCCceeEEEecC-----CCC-----CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEEeeCC-
Q 014104 262 SSDQRVATLRST-----DCT-----GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQND- 329 (430)
Q Consensus 262 ~~~~~~~~~~~~-----~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~~- 329 (430)
++...+.++... +.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+++..-. +..-+|..+. |.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~-~~~~~ 283 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD-WQDTD 283 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec-ccccC
Confidence 988777766532 112 49999999999999999999999999999988875432 2236788888 5443
Q ss_pred C-CeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 330 T-STLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 330 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+ ..+++. ....++|||-.+|+....+..
T Consensus 284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred CCceEEec-chHHhhhcccccCCceeeccc
Confidence 3 345444 557899999999998887764
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=2.5e-14 Score=118.95 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=158.1
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-----ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR- 223 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 223 (430)
.+.+.+.+|+.|...++ +.....+.||...+.. .++..|... +..+++.+..+.|++++.|..-++|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~-vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKI-VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcc-eeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35778899999999999 6677799999988765 234445444 456889999999999999999999998433
Q ss_pred --eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 224 --KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 224 --~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
++...+..++...+++.|+|. +.|++|+....|.||-++..+.- +.++..+...|++++|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 355566678999999999986 89999999999999988754431 223333667899999999999999999999
Q ss_pred eEEEEeCC-----C-------------CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 298 YASCWDLR-----T-------------MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 298 ~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
..++|..- . |+++.++....+.+..+. |+|+|..|+-.+.|+++.+-|.....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999641 1 234455555568899998 99999999999999999999987554
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=4.3e-14 Score=116.06 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=160.7
Q ss_pred CeeEEeeecCCceeEEEEecC--C-CEEE-EEe----CCeEEEEEcC--CCcccccCCCCce--eeeeEEEEcC----Cc
Q 014104 142 YKCVEEYSLPNAASLVDFDFD--E-SKIV-GLI----GTRICIWRRN--GLRSVFPSREGTF--MKGLCMRYFD----PE 205 (430)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~-~~l~-~~~----~~~i~vwd~~--~~~~~~~~~~~~~--~~~~~~~~~~----~~ 205 (430)
++.+.++..+-....+.|+.. . .+|+ |+. .+.|.+..++ +++.+......+. ..-+.|.+.. ++
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 345556666666666666632 2 2344 443 3566665554 3333222211221 2224444443 23
Q ss_pred eEEEecCCeEEEEECCCC--e--eeEEe-----ecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCce---eEEEe
Q 014104 206 AVVGCEDGTARVFDMYSR--K--CSQII-----RMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQR---VATLR 271 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~--~~~~~-----~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~---~~~~~ 271 (430)
+++.+.| .+++|.+... + +...+ ..+.++++++.|+. + +++.+.+-|.+..|||++++.. ...+-
T Consensus 115 lLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 115 LLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 4444444 7999988632 1 11111 23567999999984 3 7999999999999999998744 33444
Q ss_pred cCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeee---ecCCCceEEEEEeeC-CCCeEEEEcCC-CeEEEE
Q 014104 272 STDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWET---RISPNVVYSLQHLQN-DTSTLVVGGID-GVLRVL 345 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~s~-~~~~l~s~~~d-g~i~vw 345 (430)
. |...|..++|...+ +.+|+.+.||.|++||++..+.-..+ .....+...++ +++ |-+++++-..| ..|.|-
T Consensus 194 A-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs-wnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 194 A-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS-WNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred e-cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec-cCcCCchHHhhhhcCCceEEEE
Confidence 4 99999999999755 47889999999999999975543222 22235677777 544 44577776655 568888
Q ss_pred EcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEE
Q 014104 346 DQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLW 421 (430)
Q Consensus 346 d~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw 421 (430)
|++.. .++.++. +|++.|++++| +...|+|||+|..+.+|
T Consensus 272 DiR~P~tpva~L~------------------------------------~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 272 DIRVPCTPVARLR------------------------------------NHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred EecCCCcceehhh------------------------------------cCcccccceEecCCCCceeeecCCcceEEEE
Confidence 98753 4455554 46679999999 47889999999999999
Q ss_pred EecC
Q 014104 422 KFNY 425 (430)
Q Consensus 422 ~~~~ 425 (430)
|+..
T Consensus 316 Dl~q 319 (364)
T KOG0290|consen 316 DLQQ 319 (364)
T ss_pred eccc
Confidence 9975
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=3.4e-13 Score=112.29 Aligned_cols=173 Identities=18% Similarity=0.284 Sum_probs=132.6
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCC-cccccCCCCc-eeeeeEEEEcCCc--eE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-RSVFPSREGT-FMKGLCMRYFDPE--AV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--l~ 207 (430)
..|.|||=...+++.++.....+..+.+. .+.|+.-..+.|.||...+. +.+....... ....+++++.... |+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 47999997777888888877666666665 45788889999999998844 3222111111 1113444444333 33
Q ss_pred -EEecCCeEEEEECCCCee--eEEeecCCCCeEEEEec-CCCEEEEEeCCCe-EEEEeCCCCceeEEEecC-CCCCeEEE
Q 014104 208 -VGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLS-EDQLIISGSSLGS-IAISGLSSDQRVATLRST-DCTGIKTL 281 (430)
Q Consensus 208 -~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~v~~~ 281 (430)
-|-.-|.|+|-|+...+. ...+..|.+.|.|++.+ ++..+|++|..|+ |++||..+|..+..++.+ ....|+++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 245569999999976655 47888999999999999 6799999999997 899999999999998753 33489999
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+|+|+..+|++++..|++.||.++.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999999875
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=6.9e-13 Score=120.34 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=131.7
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
++++-..++.|.+.|..+.+.+.++...... ..+.+++|+++++ ++.||.|.++|+.+.+.+-....+.....+++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 4456667899999999999999999876554 4478999999988 7789999999999999776666677777788899
Q ss_pred cCCceEEEe-cCCeEEEEECCCCeeeEEeecC-------CCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeE--E
Q 014104 202 FDPEAVVGC-EDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVA--T 269 (430)
Q Consensus 202 ~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~--~ 269 (430)
++..+++++ ..+.+.++|.++.+.++.+... ...+..+..++. . ++++--+.+.|.+-|....+.+. .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999866654 6899999999999998887632 345677777765 4 44444555889888987655433 3
Q ss_pred EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeee
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 313 (430)
+. .........|+|++++++++ ..+..|-++|.++++.+..+
T Consensus 168 i~--~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 168 IK--VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred ec--ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 33 45578889999999987664 55678999999887665543
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=3.8e-13 Score=122.21 Aligned_cols=243 Identities=10% Similarity=0.055 Sum_probs=152.7
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEE-eCCCeEEEEecC-CCee--EEeeecCCceeEEEEecCCCEEEEE--eCCeEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTG-VGDKVMRLWSLE-GYKC--VEEYSLPNAASLVDFDFDESKIVGL--IGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~-~~dg~i~iwd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~i~ 175 (430)
.++++. +.+....+++ +++ +|+++ ..++.|.+|++. +++. +...........++++|+++.++++ .++.|.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 344444 3355667777 455 66555 458899999986 3332 3333334456679999999998833 379999
Q ss_pred EEEcCCCccc---ccC-CCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEE-----ee-cCCCCeEEEEecCC
Q 014104 176 IWRRNGLRSV---FPS-REGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQI-----IR-MHCAPVTSLSLSED 244 (430)
Q Consensus 176 vwd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-----~~-~~~~~i~~~~~~~~ 244 (430)
+|++++.... ... ........+.+.+++..++ +...++.|.+||+.+...+.. .. ........+.|+|+
T Consensus 106 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred EEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 9999743211 111 1111122345666666654 555679999999976332211 11 11234578999987
Q ss_pred -CEEEEEeC-CCeEEEEeCCC--Cc--eeEEEecC-----CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeee
Q 014104 245 -QLIISGSS-LGSIAISGLSS--DQ--RVATLRST-----DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 245 -~~l~~~~~-dg~i~vwd~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~ 312 (430)
++++++.. +++|.+||+.. ++ .+..+... .......+.++|+|++++++.. ++.|.+|++.......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 67767665 89999999973 32 23333220 1112346889999999998854 68899999865332222
Q ss_pred eecCC---CceEEEEEeeCCCCeEEEEcC-CCeEEEEEcC
Q 014104 313 TRISP---NVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~~---~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~ 348 (430)
+..+. .....+. ++|+|++|+++.. +++|.+|+++
T Consensus 266 ~~~~~~~~~~p~~~~-~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 266 FEGHQPTETQPRGFN-IDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeEEEeccccCCceE-ECCCCCEEEEEEccCCcEEEEEEc
Confidence 22221 2345677 9999999988775 8999999875
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.2e-15 Score=131.39 Aligned_cols=221 Identities=15% Similarity=0.155 Sum_probs=148.6
Q ss_pred hcccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCC
Q 014104 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 172 (430)
.|.++-..-++|.||++.|+|+.| .+| +|++||.|-.+.|||.-..+.++.+...+ .+.++.|-|..
T Consensus 35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--------- 105 (758)
T KOG1310|consen 35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--------- 105 (758)
T ss_pred HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---------
Confidence 344445555689999999999999 466 99999999999999999888888877543 23345554421
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC----------eeeEEeecCCCCeEEEEec
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------KCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~~ 242 (430)
.+..+++|..|..|+++|+... +....+..|...|..++..
T Consensus 106 -----------------------------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~ 156 (758)
T KOG1310|consen 106 -----------------------------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA 156 (758)
T ss_pred -----------------------------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC
Confidence 0111566666777777776531 2334455678888888888
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCCceeEEEecC---------CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCC---
Q 014104 243 ED--QLIISGSSLGSIAISGLSSDQRVATLRST---------DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTM--- 307 (430)
Q Consensus 243 ~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~--- 307 (430)
|+ +.+.++++||+++-+|++.......-... .--...++.++|.. .+|++|+.|-..++||.+..
T Consensus 157 p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks 236 (758)
T KOG1310|consen 157 PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS 236 (758)
T ss_pred CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence 75 68999999999999999863321111100 11256789999876 47889999999999995421
Q ss_pred -----c----------eeeee-ecCC-----------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 308 -----K----------SLWET-RISP-----------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 308 -----~----------~~~~~-~~~~-----------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
. ++.-+ .+|. ..++-+. |+|+|.-|+..-..-.|+++|+..++....+
T Consensus 237 ~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt-fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 237 FRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT-FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE-ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 11111 1111 1134455 8999987766655668999999877654433
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.6e-13 Score=125.70 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=188.5
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC--Ce--eEEeee-cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YK--CVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~ 181 (430)
.|+-.++|.++ +++ ++++|..||.|.+|.--. +. ....+. ++..+.+++|+++|.+|+ |+..+-+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 46666888888 455 999999999999995322 11 122222 457889999999999999 89999999999999
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-----------CCCCeEEEEecCC-CEEEE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-----------HCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~-~~l~~ 249 (430)
++..+...-+.....+.+++++...+....|..|.+....+.+...++.+ ..+-.+.+.++|. +.++.
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 98777777777777788888888888888899999998765544333322 2344677888884 77888
Q ss_pred EeCCCeEEEEeCCCCceeEEEecC----C------CCCeEEEEEecCCCEEEEEe--------CCC--eEEEEeCCCCce
Q 014104 250 GSSLGSIAISGLSSDQRVATLRST----D------CTGIKTLCYNPCSRLVFAGT--------TAG--YASCWDLRTMKS 309 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~----~------~~~v~~~~~~~~~~~l~~~~--------~dg--~i~i~d~~~~~~ 309 (430)
.+..|.|.+||+.+...+..+... + ...+++++.+..|.+++|.- .|| .+++|-......
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 899999999999988877666421 1 12577888888899998873 232 477887654322
Q ss_pred e----e-eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCc----------eEEEEEeccCcceeeeccCCce
Q 014104 310 L----W-ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGE----------VLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 310 ~----~-~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
- . ....|...+...++.++... ..++++.||.+++|-....+ +...-..|...+...++|.||+
T Consensus 443 t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc
Confidence 1 1 23457666666654555544 88999999999999884221 2221123556667778888886
Q ss_pred EE
Q 014104 374 IE 375 (430)
Q Consensus 374 v~ 375 (430)
+.
T Consensus 523 ll 524 (792)
T KOG1963|consen 523 LL 524 (792)
T ss_pred EE
Confidence 63
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=9.5e-14 Score=134.36 Aligned_cols=272 Identities=17% Similarity=0.206 Sum_probs=176.4
Q ss_pred EecCCCeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCc--------ccccCCCCceeeeeEEEEcCCc
Q 014104 137 WSLEGYKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLR--------SVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 137 wd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
|+.. |..+..+..| ..+.-++.++.. .+++ ++.||+|++|+...-. .......+.....+.++..+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 4433 4555555544 334446666544 7788 8999999999986421 1122234555667788888888
Q ss_pred eEEEecCCeEEEEECCCC--e-----eeEEeecC-CCCeEEE-EecC--CC-EEEEEeCCCeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCEDGTARVFDMYSR--K-----CSQIIRMH-CAPVTSL-SLSE--DQ-LIISGSSLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~-~~~i~~~-~~~~--~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
+++++.||.|++.++... + +......+ .+.+.+| ++.. .. .++.+..-+.|..||++......+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998652 1 12222222 2344444 3332 23 7888888999999999987766655431
Q ss_pred -CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEEeeC---CCCeEEEEc--CCCeEEEEE
Q 014104 274 -DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQN---DTSTLVVGG--IDGVLRVLD 346 (430)
Q Consensus 274 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~---~~~~l~s~~--~dg~i~vwd 346 (430)
..+.|++++.+|.++++++|+..|.+.+||++-+.++..+. ++..++..+. ..| .....++++ ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~-~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVW-LCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEE-eeccCCCCceEEEecccCCCceeeee
Confidence 34589999999999999999999999999999888887654 2335666665 433 334555444 578899999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC-CCeeE-EEEcCeEEEEeeCCCeEEEEEec
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR-PPITC-LAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+.+|.+-.++...++...+--. ++.+ ...+.+. ..+.| +.--+..+.+|+.|+.||.||..
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~-------------~Ps~----~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYA-------------LPSN----DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhh-------------cccc----cCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 9999887777654221111000 0000 0001111 12222 22246789999999999999987
Q ss_pred CCC
Q 014104 425 YSD 427 (430)
Q Consensus 425 ~~~ 427 (430)
..+
T Consensus 1335 ~p~ 1337 (1431)
T KOG1240|consen 1335 RPE 1337 (1431)
T ss_pred Ccc
Confidence 654
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=126.93 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=156.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.++.++.||.+.+-+ ..++..+.+..| +.+.+-.|++||.-|+ ++.||.|++|.-.+.-.......+..+.+..|.+
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 788889999999887 455767777766 4556688999999999 8999999999988765544445555566677777
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
++..++-+.. +.+.+=-+.....+-..+.|.+-|.++.|++- +++++|++|-..++||.. |+.+.+-.. |+.+|++
T Consensus 156 ~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITS 232 (737)
T KOG1524|consen 156 NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITS 232 (737)
T ss_pred CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-hccceee
Confidence 7776554433 35666666666666778899999999999964 899999999999999964 777766655 8889999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
++|+|+ ..++.++.+ ++++ -+...+.|..++ ||+||..+++|...|.+.+
T Consensus 233 va~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnls-WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLS-WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeee-eeee-----------cCCCccceEEEE-EcCCCceeeccccCceEEE
Confidence 999999 666666553 3441 122347899999 9999999999999888754
No 211
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.62 E-value=2.3e-12 Score=119.35 Aligned_cols=265 Identities=17% Similarity=0.109 Sum_probs=176.9
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeee
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (430)
...++.+++++.+|.|..+|..+|+.+..+........ ....++..++ ++.++.+..+|.++++..+..........
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~- 139 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS- 139 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec-
Confidence 44577899999999999999999999887776543222 1122345554 88899999999999887665443322111
Q ss_pred EEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeE-----EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-----SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
.....+..++.++.+|.+..+|.++|+.+..+......+. +... .++.++.+..++.+..+|.++|+.+.....
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 1112345578888899999999999998887764332211 1111 135678888899999999999988765432
Q ss_pred CCCC---C------e-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 273 TDCT---G------I-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 273 ~~~~---~------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
.... . + ....+ .+..+++++.+|.++.||..+++.+...... ...... ..+..++.++.+|.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~---~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA---VDDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce---EeCCEEEEECCCCeE
Confidence 1110 0 0 01112 3457888888999999999999888766522 112222 246778888899999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
+.+|..+|+.+........ ....+....+..+++++.||.|.++|
T Consensus 292 ~~~d~~tG~~~W~~~~~~~-----------------------------------~~~ssp~i~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKY-----------------------------------RQLTAPAVVGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEECCCCcEEEccccccC-----------------------------------CccccCEEECCEEEEEeCCCEEEEEE
Confidence 9999999987765422111 01222233566788888999999999
Q ss_pred ecCCCc
Q 014104 423 FNYSDK 428 (430)
Q Consensus 423 ~~~~~~ 428 (430)
..+|+.
T Consensus 337 ~~tG~~ 342 (377)
T TIGR03300 337 REDGSF 342 (377)
T ss_pred CCCCCE
Confidence 887764
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=7.5e-14 Score=116.20 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=168.6
Q ss_pred EEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
..+.--.++|+|.+|+ ++ .+|.+-....|.||..... +..++++.| ..+..++|+|..+.|+ ++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 3444556799999994 55 8999999999999987654 456777766 4466799999999988 89999999999
Q ss_pred c-CCCc--c-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee----EEeecCCCCeEEEEecCC-CEEEE
Q 014104 179 R-NGLR--S-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS----QIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 179 ~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
. +++. . +...........+.+++.++.+++|+....|.||-.+..+-- +.-+.+.+.|++++|+|+ -++++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 8 4443 1 112222333456778888888999999999999987654322 123345678999999977 57888
Q ss_pred EeCCCeEEEEeCC------------------CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-ee
Q 014104 250 GSSLGSIAISGLS------------------SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SL 310 (430)
Q Consensus 250 ~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~ 310 (430)
|+.|+.+++|..- -|+.+..+.. ..+.+..+.|+|+|..|+-.+.|..+.+-|..... .+
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 8999999998632 1233333422 55689999999999999999999999999987654 33
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..+....-+..++.|.+ ...++.++.|..=.++
T Consensus 243 ~~~~~~~lP~ls~~~is--e~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWIS--ENSVVAAGYDCGPVLF 275 (361)
T ss_pred cchhhccCCceeeEeec--CCceeecCCCCCceEE
Confidence 33333335666776443 2446666666433333
No 213
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=2.5e-13 Score=114.23 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=166.5
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEe-cCCCeeEEeeec--CCceeEEEEecCCCEEE-EEeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS-LEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
...++.++||.+.|+.... +.. -+++.+.|.++|||- .+.++.-..+.. +..+.++.+..+...|+ +-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3456678999999998766 544 899999999999994 556666555554 56777888888888888 77788888
Q ss_pred EEEcCCCc--c-cccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEE
Q 014104 176 IWRRNGLR--S-VFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG 250 (430)
Q Consensus 176 vwd~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 250 (430)
-+.+...- . .......+...+....+. ...+++.+.|..+.---.+.+..+..+... ...+++.+.- .+...|
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~-~~~fvG 171 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA-LYAFVG 171 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee-EEEEec
Confidence 88765322 1 122222333333333333 334888888877765555555544333211 1111122211 144445
Q ss_pred eCCCeEEEEeC--CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEee
Q 014104 251 SSLGSIAISGL--SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 251 ~~dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s 327 (430)
...|.|.+-.+ ..-..+.++.+ |.+.+++++|.|....|++|..|..+.+||+--.+- ..++.+|.+.|..+. .-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~-~~ 249 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS-YA 249 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh-hh
Confidence 55555544333 34556777877 889999999999999999999999999999975443 346788988898887 65
Q ss_pred CCCCeEEEEcCCCeEEEEEcCC
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+--+.+++++.||.|.+||.+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhheeeeeccCCCeEEEEeccc
Confidence 6678899999999999999874
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.60 E-value=4.3e-12 Score=117.48 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=155.7
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCcee----ee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFM----KG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~----~~ 196 (430)
.++.++.++.++.+..+|..+|+.+................++..+++..++.+..||.++++.++........ ..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 45688889999999999999999988776554332211222444444788999999999988865543222110 00
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC----C------e-EEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA----P------V-TSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
......+..++.+..+|.+..+|.++|+.+........ . + ....+ .++.++.++.+|.+..+|..+|+
T Consensus 184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCc
Confidence 11112234578888899999999999987765431110 0 0 01111 24678888889999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
.+..... . ....... .+..+++++.+|.+..+|..+++.+.+..... ....+.. . .+..|++++.+|.|++
T Consensus 263 ~~W~~~~--~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~-i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 263 VLWKRDA--S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA-V--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred EEEeecc--C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE-E--ECCEEEEEeCCCEEEE
Confidence 8877652 1 1222222 46778888899999999999998887653221 2222222 2 3668899999999999
Q ss_pred EEcCCCceEEEEEecc
Q 014104 345 LDQNTGEVLSRCVMDI 360 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~ 360 (430)
+|..+|+.+.++..+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999887543
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9e-14 Score=124.29 Aligned_cols=241 Identities=16% Similarity=0.188 Sum_probs=171.2
Q ss_pred EeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc---eEEEecCCeEEEEEC
Q 014104 146 EEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDM 220 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~ 220 (430)
+.|..+.....+.++|||++++ |...-.|++||+..-...+..|...- ++.+.+...+ ++.-..|.+|.+...
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae--~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE--VVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc--ceeEEEeccchhhheEeecCceeeehhh
Confidence 3455667778899999999998 56678999999998877666655432 2333332222 555566667666442
Q ss_pred CCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 221 YSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.|.-. .+. -...-.+++++ ++--++.++....|+-++++.|+.+..+.. ..+.+.++..++...+|++|+.+|.|
T Consensus 124 -~G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 124 -YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred -cCeee-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceE
Confidence 22211 111 12233567777 563355555567899999999999999986 56799999999999999999999999
Q ss_pred EEEeCCCCceeeeeec------CCC-----ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 300 SCWDLRTMKSLWETRI------SPN-----VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~------~~~-----~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
..||.++...+..+.. |.+ .|+++. |+.+|-.+++|..+|.|.|||+++.+++..-. |..
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~-F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~------- 270 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK-FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY------- 270 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEE-ecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC-------
Confidence 9999998766554432 332 499999 98889999999999999999999887765432 222
Q ss_pred cCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---c-CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 369 KVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---G-MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 369 s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~-~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
.-+|..+.| + +..++|.. ...++|||-.+|+.+
T Consensus 271 ---------------------------e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 271 ---------------------------ELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPM 307 (703)
T ss_pred ---------------------------ccceeeecccccCCCceEEecc-hHHhhhcccccCCce
Confidence 236777777 2 34566654 468999998888754
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-13 Score=118.24 Aligned_cols=301 Identities=15% Similarity=0.106 Sum_probs=207.9
Q ss_pred HHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCCCCCchHHHHHHHHcccchhhcccCCEe--------
Q 014104 33 CMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-------- 104 (430)
Q Consensus 33 ~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 104 (430)
.+|-+||..+.|.....+-+.|+.-... |.+|++.. ..---++.++.|+.+.+.+..|+-.
T Consensus 17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~-------~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~ 85 (609)
T KOG4227|consen 17 FKIESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDV-------REHTGCINALQFSHNDRFLASGGDDMHGRVWNV 85 (609)
T ss_pred ceeeeeeeecccCCChhhhhhhchhhhh----cchhhhhh-------hhhccccceeeeccCCeEEeecCCcceeeeech
Confidence 4678899888888877777776644333 44454441 0001224556677777777776642
Q ss_pred -----------EEEEe-ccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE
Q 014104 105 -----------IDQWK-AHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV 167 (430)
Q Consensus 105 -----------~~~l~-~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 167 (430)
+.... .|...|.|++|.- + ++++|+.+++|...|+++.+.+..+...+ .+..+..+|..+.++
T Consensus 86 de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~ 165 (609)
T KOG4227|consen 86 DELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLI 165 (609)
T ss_pred HHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEE
Confidence 22222 3568999999954 3 99999999999999999999988887654 677789999877777
Q ss_pred -EEeCCeEEEEEcCCCc----ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee-eE------EeecCCC
Q 014104 168 -GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-SQ------IIRMHCA 234 (430)
Q Consensus 168 -~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~-~~------~~~~~~~ 234 (430)
.+.++.|.+||..... ..+....+......-+.+..|. |++++..+-+-+||.+..+. +. .+.....
T Consensus 166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 8889999999987654 2233333333333344444444 78888889999999875432 11 1222223
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCC-------CeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCT-------GIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
..+.+.|+|+ +.+++--....-.+||+.+.++ +.++. |.. .+.+++|-.+ ..+++|+.+-.|++|.+.
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D--~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD--HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc--CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecC
Confidence 3467888865 6777766666777889877443 33333 322 5667788644 458999999999999874
Q ss_pred CC-----------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 306 TM-----------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 306 ~~-----------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.. +.+..+++|...+..+. |+|...+|++.+-.+.+++|.-.
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR-F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR-FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEeccccccccee-ecCCcceEeccchhhheeccccc
Confidence 21 23456889999999998 99999999999999999999643
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=6.7e-12 Score=113.97 Aligned_cols=253 Identities=16% Similarity=0.131 Sum_probs=161.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~ 179 (430)
.+.++....+.-..+.+ +|+ ++++++.||.|.++|+.+++.++++........+++++||++++ + ...+.+.++|.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 45666655444334566 566 88888999999999999999999999888888899999999998 3 45899999999
Q ss_pred CCCcccccCCCC--------ceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeE-EeecCCCCeEEEEecCC-CEEE
Q 014104 180 NGLRSVFPSREG--------TFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 180 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
++.+.+.....+ .....+..++..+.++..-. .+.|.+.|....+.+. .............|+|+ ++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 987754322211 11122223345554555554 4888888977654332 22223446678888876 5554
Q ss_pred E-EeCCCeEEEEeCCCCceeEEEecC------------C-----------------------------------------
Q 014104 249 S-GSSLGSIAISGLSSDQRVATLRST------------D----------------------------------------- 274 (430)
Q Consensus 249 ~-~~~dg~i~vwd~~~~~~~~~~~~~------------~----------------------------------------- 274 (430)
. ...++.|.++|..+++.+..+... |
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 4 456678888888776655433210 0
Q ss_pred CCCeEEEEEecCCCEEEEE----eCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcC--CCeEEEEEc
Q 014104 275 CTGIKTLCYNPCSRLVFAG----TTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQ 347 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~ 347 (430)
.+.-.-+..+|+++++++. ...++|.++|.++.+.+..+.... ..+..+. |+++|+++..+.. ++.|.+||.
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e-f~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME-FNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE-E-TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE-ECCCCCEEEEEEecCCCEEEEEEC
Confidence 0112456678999999987 445789999999998877765432 3488888 9999997766553 347999999
Q ss_pred CCCceEEEEE
Q 014104 348 NTGEVLSRCV 357 (430)
Q Consensus 348 ~~~~~~~~~~ 357 (430)
.+.+.+.++.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999999887
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2e-13 Score=127.93 Aligned_cols=217 Identities=11% Similarity=-0.021 Sum_probs=143.7
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEE-
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICI- 176 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~v- 176 (430)
.+.+..|...+.+..| |+| .|+.++.+ ..|.+||+.+++..............+|+|||+.|+ +. .+|.+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence 3456677788899999 566 77776653 479999998876433222223334689999999988 43 5776555
Q ss_pred -EEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 -WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 -wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
||+.++................+.+++..++.++ .+|...+|++... .....+ .+.+ ....|+|+ +.++.++.
T Consensus 276 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 276 VMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 4666555322222222344577888887766544 5788888876432 222223 3433 45778876 77777776
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC--CCCceeeeeecCCCceEEEEEeeCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL--RTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++ +.+||+.+++....... . ....+.|+|+|++|+.++.++.+.+|++ .+++.+..+..|.+.+...+ |+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~-wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSST-F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPA-WSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcc-cCCC
Confidence 55 55699998876433222 2 3356789999999999999998888875 35778888888888888887 8774
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.6e-13 Score=115.15 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=149.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC--CEEEEEeCC--CeEEEEeCCCCceeE
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED--QLIISGSSL--GSIAISGLSSDQRVA 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~--~~l~~~~~d--g~i~vwd~~~~~~~~ 268 (430)
..+...+..|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++. .++++|+.. ..+.+||+.+.+.+.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 3344445558999999999999987442 23333322 45666666654 577789988 899999999886655
Q ss_pred EEecCCC--------CCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 269 TLRSTDC--------TGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 269 ~~~~~~~--------~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.-+.... -.++++.|-|. ...|++++.-+.+++||.+.+ +++..+.....+++++. ..|+++++++|.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~-l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG-LTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee-ecCCCcEEEEec
Confidence 4432111 25778889887 789999999999999999874 57788887788999998 889999999999
Q ss_pred CCCeEEEEEcCCCceEEE-EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcC--eEEEEeeC
Q 014104 338 IDGVLRVLDQNTGEVLSR-CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGM--KKVVTTHN 414 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~l~t~~~ 414 (430)
.-|.+..||++.++.... +. +..+.|+++..++ .+++++|-
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~k------------------------------------g~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLK------------------------------------GITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred ccchhheecccCceeeccccC------------------------------------CccCCcceEEEcCCCceEEeecc
Confidence 999999999998887665 33 2345888888864 58999999
Q ss_pred CCeEEEEEecCCC
Q 014104 415 SKYIRLWKFNYSD 427 (430)
Q Consensus 415 Dg~v~vw~~~~~~ 427 (430)
|..|||+|+++.+
T Consensus 311 DRyvRIhD~ktrk 323 (412)
T KOG3881|consen 311 DRYVRIHDIKTRK 323 (412)
T ss_pred ceeEEEeecccch
Confidence 9999999999843
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.5e-14 Score=122.43 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=135.2
Q ss_pred eEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe-eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCC-
Q 014104 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE- 190 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~- 190 (430)
.+++| .+| .+++|+.||++|||+..+...+.. ..++..+..+.|+||++.|+ .+.+ ..+||+.+++..+....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 56777 344 999999999999999776655544 44567888899999999999 6666 999999999854322221
Q ss_pred --CceeeeeEEEEcC--Cc--e-EEEecCCeEEEEECCCCee---e--EEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 191 --GTFMKGLCMRYFD--PE--A-VVGCEDGTARVFDMYSRKC---S--QIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 191 --~~~~~~~~~~~~~--~~--l-~~~~~dg~i~vwd~~~~~~---~--~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
......+.+..++ +. + +....-+.|..||+..... + .....-...|++++++++ ++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1111122222222 11 2 2223345566665532211 1 111112347999999965 8999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+++..+.+.++-.+..|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999888999999999999999999988888888876653
No 221
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=4.7e-14 Score=120.94 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=126.7
Q ss_pred ceEEEecCCeEEEEECCCCe---------eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC--------C---
Q 014104 205 EAVVGCEDGTARVFDMYSRK---------CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS--------S--- 263 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~--------~--- 263 (430)
.+++|+.|..|++|-+..+. .+..+..|...|+++.|+|+ +++++|+++|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 49999999999999876432 23456789999999999976 899999999999999765 2
Q ss_pred --C---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 264 --D---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 264 --~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
. ...+.+.+ |...|..++|+|+++++++++.|..+++||+..|+.+..+..|...+..++ |.|-++++++-+.
T Consensus 108 ~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva-wDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA-WDPLNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee-cchhhhhhhhhcc
Confidence 1 12333444 888999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCeEEEEEcCCCceEEEE
Q 014104 339 DGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~ 356 (430)
|...+.+.+.....++..
T Consensus 186 dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred Ccccceeeeeeeeeeeee
Confidence 998888887755444433
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.7e-12 Score=119.13 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=146.0
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 207 (430)
.|.+||.+.........+.......+|+|||+.|+ .+. +..+.+|++.+++... ....+. .....+++++..|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEE
Confidence 78899987655444344455677799999999988 432 3579999998876322 222222 23467888888766
Q ss_pred EE-ecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC-C--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 VG-CEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL-G--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 ~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.. +.+| .|++||+.+++.... ..+...+....|+|+ +.|+..+.+ + .|.++|+.+++.. .+.. .......
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccC
Confidence 54 4444 589999988766543 334456788999986 666666543 4 4555577766543 3332 3335667
Q ss_pred EEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe---EEEEEcCCCceEE
Q 014104 281 LCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV---LRVLDQNTGEVLS 354 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~---i~vwd~~~~~~~~ 354 (430)
..|+|+|++++..+.+ ..|.+||+.+++.. .+... ....... |+|||++|+.++.++. +.++++. |...+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~-~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~ 411 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPS-IAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA 411 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCce-ECCCCCEEEEEEcCCCceEEEEEECC-CCCeE
Confidence 8999999998876543 35889999877643 33321 1233555 9999999998887754 6777874 66666
Q ss_pred EEEeccC
Q 014104 355 RCVMDIG 361 (430)
Q Consensus 355 ~~~~~~~ 361 (430)
.+..+.+
T Consensus 412 ~l~~~~~ 418 (429)
T PRK03629 412 RLPATDG 418 (429)
T ss_pred ECccCCC
Confidence 6765544
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2.1e-13 Score=121.03 Aligned_cols=161 Identities=11% Similarity=0.197 Sum_probs=121.0
Q ss_pred EEEEEeCCeEEEEEcCCCcc--ccc---CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC--------------Ce
Q 014104 165 KIVGLIGTRICIWRRNGLRS--VFP---SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS--------------RK 224 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~--~~~---~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~--------------~~ 224 (430)
.+++-..|.+.+.|....+. ++. ......+..+.|.+.++. ++++-.+|.+++||..- +.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 34588889999988766331 111 111223344555555555 77888899999997531 11
Q ss_pred e--------------eEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCE
Q 014104 225 C--------------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 225 ~--------------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 289 (430)
. +.....-.+.|..++|+|+ .+||+.+.||.++|||..+.+.+..++. --+...|++|+|||++
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKY 346 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccE
Confidence 1 1111112457888999976 8999999999999999999888776665 4568999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+++|++|..|.||.+...+.+..-++|..+|..++ |.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va-FD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA-FD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEe-ec
Confidence 99999999999999999999999999999999998 76
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=134.44 Aligned_cols=252 Identities=14% Similarity=0.185 Sum_probs=184.5
Q ss_pred cccchhhcccCCE-------------eEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-Cce
Q 014104 91 MKHHRFALEEGRI-------------DIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAA 154 (430)
Q Consensus 91 ~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 154 (430)
+++.+.++.+|.- ++..+.||.+.|+.++.+. + +++++|.|..|++|.+.++.++..+.+| +.+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav 277 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV 277 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence 4555566666553 4557789999999999964 4 9999999999999999999999999887 567
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCcccc-----cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 155 SLVDFDFDESKIVGLIGTRICIWRRNGLRSVF-----PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
..++|+|-. .++.||++++||..-....+ ....+......-+...+..+++++.|+.-..|.+..-..
T Consensus 278 taiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~---- 350 (1113)
T KOG0644|consen 278 TAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW---- 350 (1113)
T ss_pred eeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh----
Confidence 789999865 46779999999987211111 111222222333444455589999999888887542211
Q ss_pred ecCCCCeEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC
Q 014104 230 RMHCAPVTSLSLS--EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT 306 (430)
Q Consensus 230 ~~~~~~i~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~ 306 (430)
+...+.-+..+ -+.+.+++-.+..+++|++.+|+..+.+.+ |...+..+.++|-...++ +++.||...|||+-.
T Consensus 351 --~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 351 --RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred --hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 11111111111 125677778888999999999999998887 888999999999776555 889999999999999
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
+.+++.+......+..-+ ||++|..++....-|.++|.....++..
T Consensus 428 g~pik~y~~gh~kl~d~k-FSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 428 GIPIKHYFIGHGKLVDGK-FSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCcceeeecccceeeccc-cCCCCceEecCCCCCceEEeccCCCccc
Confidence 988876554445566666 9999999998888899999987655443
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=5.5e-12 Score=118.53 Aligned_cols=219 Identities=16% Similarity=0.082 Sum_probs=142.7
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 206 (430)
..|.+||...........+...+....|+||++.|+ .+. ...|.+||+.+++... ....+ ......+++++..+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEE
Confidence 368999987654443333445566789999999988 442 3469999998876432 22222 23345677778775
Q ss_pred E-EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCe--EEEEeCCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGS--IAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.+| .|++||+.+++.. .+..+.......+|+|+ +.++.++ .+|. |.++|+.+++...... ......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCcc
Confidence 4 455555 5999999887653 45555555677899976 6666655 3444 7777877766433222 233455
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~ 353 (430)
..+|+|+|++++..+.++ .|.+||+.+++.. .+. +........ |+|||++++..+.+ +.|.++++. +...
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~-~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~ 415 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS-FAPNGSMVLYATREGGRGVLAAVSTD-GRVR 415 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCce
Confidence 789999999998765433 6999999877654 333 222344556 99999988776643 468888885 4455
Q ss_pred EEEEe
Q 014104 354 SRCVM 358 (430)
Q Consensus 354 ~~~~~ 358 (430)
+.+..
T Consensus 416 ~~l~~ 420 (433)
T PRK04922 416 QRLVS 420 (433)
T ss_pred EEccc
Confidence 55544
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.7e-12 Score=106.65 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=188.4
Q ss_pred ceeEEEec-CC--eEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCccccc
Q 014104 114 GVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 114 ~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~ 187 (430)
.|.-+.+. +. .|.....|+.|.+|++...+-...+.. +.+...++|+|||+.++ +..+-.|.+|.+.+......
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 34455553 33 556667899999999998888777775 46677899999998877 66688999999999988777
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECC---CCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
.+..+...++++.+++...+.++.-.....+++. .-..++.++..+-..+.+.|+|+. ..+.+||.--.
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--------~~laVwd~~Le 201 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--------NWLAVWDNVLE 201 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--------cEEEEecchhh
Confidence 7777777888888888886666553221112221 223344555555567889999872 23446664322
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee----------------------------------
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL---------------------------------- 310 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------------- 310 (430)
-.+...+ -.-++..++|+|.+++|++|+.|+.+++.+--+-++.
T Consensus 202 ykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 202 YKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred heeeeee--eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 2233333 3347899999999999999999999988654221100
Q ss_pred --------------------------eeee------cCCCceEEEEEeeCCCCeEEEEcC--CCeEEEEEcCCC------
Q 014104 311 --------------------------WETR------ISPNVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQNTG------ 350 (430)
Q Consensus 311 --------------------------~~~~------~~~~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~~~~------ 350 (430)
..++ .....+--++ |++|..+++|-.. -+.+-+||++.-
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la-fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA-FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee-ecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0000 0112345566 9999999988753 367999999854
Q ss_pred ---ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCe
Q 014104 351 ---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKY 417 (430)
Q Consensus 351 ---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~ 417 (430)
.+++.+.-+++.-.++.......++.|...- ......+. ..-.|..+.| +|..++-.+.|.-
T Consensus 359 iQk~piraf~WdP~~prL~vctg~srLY~W~psg----~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 359 IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG----PRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhccceeEEEeCCCCceEEEEcCCceEEEEcCCC----ceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 4577777777766666665555565544211 00111111 1136778888 5888988888853
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.1e-12 Score=125.40 Aligned_cols=271 Identities=15% Similarity=0.123 Sum_probs=175.4
Q ss_pred cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEE----EecCCCEEE-EEeCCeEEEEEcCCCccc
Q 014104 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVD----FDFDESKIV-GLIGTRICIWRRNGLRSV 185 (430)
Q Consensus 111 h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~~~~~i~vwd~~~~~~~ 185 (430)
|-+++.+..+-..+|+.|. .-.|.+||+..+..+..+..-.....-. ..-.+.+++ +..-+.+..=+.+.. .
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~--~ 82 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ--I 82 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh--h
Confidence 3455566666446665444 4579999999877665443211110000 000112222 333333322221111 1
Q ss_pred ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeEE---EEecCC-CEEEEEeCCCeEEEEe
Q 014104 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTS---LSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~---~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.......+.. ..+......++.++.+..+.+||...+.....+..... ...+ +..+++ -++++|+.-+.|.+|+
T Consensus 83 ~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 83 IERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 1111111111 11222333488888899999999877766555542211 1111 122234 4789999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-eeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-ETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
....+.-..+.+ |.+.+..+.++-+|+++++.+.|.++++|++.+.+... ..-+|...|+.+. +.|+ .++|++.|
T Consensus 162 ~~~dn~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~-~~~n--~i~t~ged 237 (967)
T KOG0974|consen 162 PHEDNKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC-FLPN--RIITVGED 237 (967)
T ss_pred ccccCCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE-eccc--eeEEeccc
Confidence 873333334555 99999999999999999999999999999999987766 6778999999998 8777 89999999
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCe
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKY 417 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~ 417 (430)
-+.++|+.. ++.+..+..|.. ..|..++.+ ...++|++.|+.
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-----------------------------------~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-----------------------------------KGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-----------------------------------cceeEEEEcCCceEEEeeccCcc
Confidence 999999755 666666666554 467877773 566899999999
Q ss_pred EEEEEecC
Q 014104 418 IRLWKFNY 425 (430)
Q Consensus 418 v~vw~~~~ 425 (430)
+++|++..
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999753
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=4.5e-12 Score=104.55 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=99.4
Q ss_pred EEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEE--EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 215 ARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLII--SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
+...+... ..+..+.. ..++|.+++|+|+ +.++ .|..++.|.+||++ ++.+..+. ...+..+.|+|+|++|
T Consensus 41 l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 41 LFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEE
Confidence 44444333 33444432 3457999999986 5543 34567899999996 67777764 3467899999999999
Q ss_pred EEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC------CCeEEEEEcCCCceEEEEE
Q 014104 291 FAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI------DGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 291 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 357 (430)
++++. .|.|.+||+++.+.+..... ..+..++ |+|+|++++++.. |+.++||+.. |+.+....
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~-WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVE-WSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEE-EcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 98864 46799999998888877653 3467887 9999999998874 7889999985 77776654
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.6e-13 Score=117.03 Aligned_cols=258 Identities=16% Similarity=0.219 Sum_probs=178.6
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEE--EEcCCc--eEEEecCCeEEEEE
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCM--RYFDPE--AVVGCEDGTARVFD 219 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~--l~~~~~dg~i~vwd 219 (430)
..+..| +.+..+.|...|..++ ++.|..|.+||...+...+....+|...++.- .++... +++++.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344444 6677899999999999 88899999999999988877777776554433 333333 99999999999876
Q ss_pred CC-CCee--eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCC---CeEEEEEecCCC-
Q 014104 220 MY-SRKC--SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS--TDCT---GIKTLCYNPCSR- 288 (430)
Q Consensus 220 ~~-~~~~--~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~- 288 (430)
+. ++.+ ...+..|.++|.-++.-|+ ..|.+++.|+.+.-+|++++.+...+.. .+.. ....++.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54 3332 3455679999999999886 6899999999999999998766444331 1233 577888888665
Q ss_pred EEEEEeCCCeEEEEeCCCCc------eeeeeecC------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 289 LVFAGTTAGYASCWDLRTMK------SLWETRIS------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.+++|+.|..+++||.+.-. .+..+-.| .-.|++++ |+.++.-|.++-.|-.|+++.-..+.--...
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCccceeeeecccceEEeccccccCCCCC
Confidence 88899999999999987522 12222222 25689998 8877766666667888999954322110000
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC--CCeeEEEE---cCeEEEEeeCCCeEEEEEecCCC
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR--PPITCLAV---GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. .++. ........++|. ..|-++-| ...|+++||+=|.|.||+-.+++
T Consensus 375 ~----------~s~~-------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 375 P----------SSPR-------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred C----------Ccch-------------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 0 0000 011122234555 34777877 36899999999999999988775
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-11 Score=113.57 Aligned_cols=220 Identities=13% Similarity=0.047 Sum_probs=135.9
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccccC-CCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 206 (430)
..|.++|...............+...+|+|||+.|+ .+. ...|.+||+.+++..... ..+ ......+++++..+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 467777875433333333445566789999999988 443 245999999988643222 222 22346777788776
Q ss_pred E-EEecCCeEEEE--ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEe--CCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDGTARVF--DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISG--LSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd--~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.+|...+| |+.++. ...+..+.+......|+|+ +.++..+ .+|...+|. +.+++...... ......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~ 331 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNT 331 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcC
Confidence 5 56777775555 554444 4455555556677889976 6666554 345555554 44444322222 223344
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~ 353 (430)
...|+|+|++++..+.++ .|.+||+.+++... +..+ ....... |+|||+.|+..+.++ .+.+.++ +|...
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~-~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~ 407 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPS-FAPNGRYILYATQQGGRSVLAAVSS-DGRIK 407 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCce-ECCCCCEEEEEEecCCCEEEEEEEC-CCCce
Confidence 678999999998766554 69999998876543 3222 2335566 999999888777543 3556666 35555
Q ss_pred EEEEec
Q 014104 354 SRCVMD 359 (430)
Q Consensus 354 ~~~~~~ 359 (430)
..+..+
T Consensus 408 ~~l~~~ 413 (427)
T PRK02889 408 QRLSVQ 413 (427)
T ss_pred EEeecC
Confidence 555443
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.8e-11 Score=113.25 Aligned_cols=216 Identities=12% Similarity=-0.002 Sum_probs=141.2
Q ss_pred EEeccccceeEEEe-cCC-eEEEEe---CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGV---GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~vw 177 (430)
.+..+...+.+.+| ||| .|+..+ .+..|.+||+.+++.......+.......|+|||+.|+ . ..++ .|.+|
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 34445567788888 566 666543 24579999999886544333334445689999999988 3 3344 58899
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-C--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-G--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
|+++++...............|++++..|+..+.+ + .|.++|+.+++. ..+..+........|+|+ +.++..+.+
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 99887643222222233456777888877766654 4 455557766654 334434445667889986 666665433
Q ss_pred ---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe---EEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 254 ---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY---ASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 254 ---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
..|.+||+.+++.. .+.. ........|+|||+.|+.++.++. +.++++. ++....+..|.+.+...+ |+
T Consensus 352 ~g~~~I~~~dl~~g~~~-~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~-Ws 426 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-VLTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPA-WS 426 (429)
T ss_pred CCCceEEEEECCCCCeE-EeCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcc-cC
Confidence 35889999887643 3432 123346789999999998887764 6777774 666667777777787777 76
Q ss_pred C
Q 014104 328 N 328 (430)
Q Consensus 328 ~ 328 (430)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 6
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.2e-10 Score=98.92 Aligned_cols=232 Identities=11% Similarity=0.130 Sum_probs=152.6
Q ss_pred ceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCc-----
Q 014104 114 GVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESK-IVGLIGTRICIWRRNGLR----- 183 (430)
Q Consensus 114 ~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~----- 183 (430)
.+..++++.. .++++..|-.|++||-.. ++...++. ...+.+++|-|.+.. ++.+..+.|.+|..+...
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 3455666544 678899999999999766 55555554 356788999996654 557778889999876321
Q ss_pred ---------ccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 184 ---------SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 184 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.++.......+..+.+..++..+++++. |..|.|||..++..+.....-.+.+.-+.|+|+ +++.+++-
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 1222222333455566666666888775 578999999999887666445678899999987 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-c--------------eeeeee---
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-K--------------SLWETR--- 314 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--------------~~~~~~--- 314 (430)
|+..++|+............ ..+.|...+|+|+|++|..... |.-++|.+.-. + ++..+.
T Consensus 259 davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred cceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 99999996543322222222 3458999999999997765433 22344444211 0 011110
Q ss_pred ---c---CCCceEEEEEeeCCCCeEEEEcCCC--------eEEEEEcCC
Q 014104 315 ---I---SPNVVYSLQHLQNDTSTLVVGGIDG--------VLRVLDQNT 349 (430)
Q Consensus 315 ---~---~~~~v~~l~~~s~~~~~l~s~~~dg--------~i~vwd~~~ 349 (430)
+ -.+...+++ +.|.|.+|++.-..+ .|.+||.+.
T Consensus 337 i~ag~~l~cgeaq~la-wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLA-WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hhcCcccccCccceee-ECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 1 125677888 899999988765433 356666653
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2.3e-12 Score=123.14 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=149.9
Q ss_pred EEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeE--EEEcCCc---eEEEecCCeEEEEECCCCeeeEEee
Q 014104 157 VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLC--MRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 157 ~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
..+..+...++ .+.++.+.+||...+...............+ ...++.. +++|+.-+.|.+|+....+.-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 44555666666 8999999999999887666655554433222 2223333 8889999999999987444434688
Q ss_pred cCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeE-EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 231 MHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVA-TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 231 ~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
+|.+.|.++.++ ++.++++.|+|.++++|++.+++... ...+ |...|..++|.|+ .+++++.|-+.++|+.. ++
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~ 248 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN-GT 248 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc--eeEEeccceEEEEEecc-cc
Confidence 999999999999 45899999999999999999988876 4444 8999999999987 89999999999999765 55
Q ss_pred eeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 SLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+..+.+|. ..+..++ .+++...++|++.||.+++||+.
T Consensus 249 ~l~~y~~h~g~~iw~~~-~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 249 QLEVYDEHSGKGIWKIA-VPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eehhhhhhhhcceeEEE-EcCCceEEEeeccCcchhhhhhh
Confidence 566888886 6788988 88888999999999999999986
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=8.2e-11 Score=110.75 Aligned_cols=215 Identities=11% Similarity=-0.020 Sum_probs=140.2
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
..|.++|.++........+...+...+|+|||+.|+ .+. +..|.+||+.+++...............+++++..++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 378888986654433333445677799999999988 442 4689999998876432222222233467778887754
Q ss_pred -EEecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 -VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 -~~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
+.+.++. |.+||+.+++. ..+..+.+......|+|+ +.++..+. +| .|.++|+..++.. .+.. ....+..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~~~~~ 338 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGGRYST 338 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCCcccC
Confidence 5555554 77889987765 445556666778899976 66666553 33 6888898766543 3432 3445677
Q ss_pred EEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC------CeEEEEEcCCCc
Q 014104 281 LCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID------GVLRVLDQNTGE 351 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d------g~i~vwd~~~~~ 351 (430)
..|+|+|+.|+....+ ..|.+||+..+.. ..+.. ...+.... |+|||+.|+..+.+ ..++++|+..+.
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 8899999999876543 3688889865443 23322 22456677 99999988765532 357888876544
Q ss_pred e
Q 014104 352 V 352 (430)
Q Consensus 352 ~ 352 (430)
.
T Consensus 416 ~ 416 (435)
T PRK05137 416 E 416 (435)
T ss_pred e
Confidence 3
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.4e-11 Score=111.12 Aligned_cols=206 Identities=11% Similarity=0.095 Sum_probs=149.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (430)
++|....||.+++||..+++....|..... .+..+.-..|.+.-+......... ......+.+.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--------------~s~t~~~~~w~L~~~~s~~k~~~~--~~~~~~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIAS--------------LSGTCTYTKWGLSADYSPMKWLSL--EKAKKASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchh--------------ccCcceeEEEEEEeccchHHHHhH--HHHhhccCCc
Confidence 899999999999999999888776653100 111122223332211100000000 0000011111
Q ss_pred CceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 204 PEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
..++-|...|.|.+|+...|+.-..+. .|.+.|.++.++.+ ..|.+++.|+.+..|+...++.++.+.. ....+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccce
Confidence 127888899999999999998877775 68899999999866 8999999999999999999999988887 6678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-----CCeEEEE-cCCCeEEEEEcCC
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-----TSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-----~~~l~s~-~~dg~i~vwd~~~ 349 (430)
++.+|||..+++++ +.|++||+.+++.+..+.+|.++|.++. |..+ |.+++++ ..+.-+.+|-++.
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~-f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS-FTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE-EEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999886 5699999999999999999999999999 6665 5666554 3555677776653
No 236
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.4e-13 Score=120.03 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=130.7
Q ss_pred eEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEE
Q 014104 226 SQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCW 302 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 302 (430)
...+.+|++.|++++|+ ++.+|++|++|-.+.|||.-..+.+..+..+|...|.++.|-|. .+.+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35788999999999999 55999999999999999999899999998889999999999984 4688899999999999
Q ss_pred eCCC----------CceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCC
Q 014104 303 DLRT----------MKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVS 371 (430)
Q Consensus 303 d~~~----------~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d 371 (430)
|+.. .+....+..|...|..++ ..|++ ..+.+++.||+|+-+|++.......-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria-~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-------------- 187 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA-TAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-------------- 187 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhhee-cCCCCCceEEEecCCcceeeecccCCccCCccc--------------
Confidence 9984 234456778889999998 77888 688999999999999998532111000
Q ss_pred ceEEEeecccccCCcccccCCCCCC--CCeeEEEE---cCeEEEEeeCCCeEEEEEe
Q 014104 372 GVIERNEGRRLSAGCCIDRIPKTIR--PPITCLAV---GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~---~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+ ...+...+. -...|+.+ +..+|+.|+.|--.++||.
T Consensus 188 -~~-------------~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 188 -DC-------------PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred -cc-------------cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 00 000000000 13445565 4788999999999999994
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=1.4e-11 Score=101.58 Aligned_cols=128 Identities=15% Similarity=0.247 Sum_probs=93.5
Q ss_pred eEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 255 SIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 255 ~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
...+|.++ .+.....+.....++|.+++|+|+|+.|++ |..++.|.+||++ ++.+..+. ...+..+. |+|+|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~-wsP~G~ 113 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTIS-WSPDGR 113 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEE-ECCCCC
Confidence 34444442 233444554334557999999999998764 4457799999997 66666664 45678888 999999
Q ss_pred eEEEEcC---CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC
Q 014104 332 TLVVGGI---DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM 406 (430)
Q Consensus 332 ~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~ 406 (430)
+|++++. .|.|.+||+++.+.+..... ..++.++| ||
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--------------------------------------~~~t~~~WsPdG 155 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEH--------------------------------------SDATDVEWSPDG 155 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeecccc--------------------------------------CcEEEEEEcCCC
Confidence 9999874 46799999998877766532 24567777 58
Q ss_pred eEEEEeeC------CCeEEEEEec
Q 014104 407 KKVVTTHN------SKYIRLWKFN 424 (430)
Q Consensus 407 ~~l~t~~~------Dg~v~vw~~~ 424 (430)
++++|++. |+.++||++.
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec
Confidence 88888764 7899999985
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5.1e-11 Score=112.03 Aligned_cols=218 Identities=11% Similarity=-0.032 Sum_probs=139.0
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeC---CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCC--eEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC 175 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~--~i~ 175 (430)
.+.+..|...+.+.+| +++ .|+..+. +..|.+||+.+++........+......|+|||+.++ .+.++ .|.
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3445666777888888 566 7776664 3479999998877644333333344689999999887 34444 599
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+||+.+++..............++++++..++.++. +|. |+++|+.+++... +..+.......+|+|+ +.++..+
T Consensus 276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEE
Confidence 999988764322222222334677777777776653 444 7777877765432 3223344557899976 6666654
Q ss_pred CCC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 252 SLG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
.++ .|.+||+.+++.. .+. +........|+|+|++++..+.+ +.|.++++. +.....+..+.+.+...+
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~- 429 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPA- 429 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCc-
Confidence 332 6999999887754 343 22244567899999988766553 458888885 444555555555566665
Q ss_pred eeC
Q 014104 326 LQN 328 (430)
Q Consensus 326 ~s~ 328 (430)
|+|
T Consensus 430 wsp 432 (433)
T PRK04922 430 WSP 432 (433)
T ss_pred cCC
Confidence 655
No 239
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=4e-09 Score=93.80 Aligned_cols=251 Identities=13% Similarity=0.088 Sum_probs=163.5
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-E---------eCCeEEEEEcCCCcccccCCC--------Cc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-L---------IGTRICIWRRNGLRSVFPSRE--------GT 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~---------~~~~i~vwd~~~~~~~~~~~~--------~~ 192 (430)
++|.+.|..+++.+.++........+ ++||++.++ + + .+..|.+||..+.+.+-.... +.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 89999999999999999876555555 999999888 3 3 468999999999886533322 22
Q ss_pred eeeeeEEEEcCCceEEEe-c-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-Ccee-E
Q 014104 193 FMKGLCMRYFDPEAVVGC-E-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRV-A 268 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~ 268 (430)
....+.+++++..+++.. . +..|.+.|+.+++.+..+... +...-+..+++..+ +-+.||......+.+ |+.. .
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE-EEeecCceEEEEecCCCceEEe
Confidence 233577888888877766 3 689999999999999888742 22233333333333 333455544433332 2211 1
Q ss_pred E---EecCC----CCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCC-----ceeeeeec-------CCCceEEEEEeeC
Q 014104 269 T---LRSTD----CTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTM-----KSLWETRI-------SPNVVYSLQHLQN 328 (430)
Q Consensus 269 ~---~~~~~----~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~v~~l~~~s~ 328 (430)
. +.... ..+ .|.+ +|+++++... |+|++.|+... +....+.. ..+....++ +++
T Consensus 184 ~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia-~~~ 257 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA-YHR 257 (352)
T ss_pred eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE-EcC
Confidence 1 11100 112 4455 8888887766 99999996432 22222211 223344477 999
Q ss_pred CCCeEEEEc----------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 329 DTSTLVVGG----------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 329 ~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
+++.+++.. ..+.|.++|..+++.+..+.... .
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-------------------------------------~ 300 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-------------------------------------E 300 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-------------------------------------c
Confidence 999888743 22589999999999999887522 4
Q ss_pred eeEEEE--cCe-EEE-EeeCCCeEEEEEecCCCc
Q 014104 399 ITCLAV--GMK-KVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 399 v~~v~~--~~~-~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
+..+++ |++ +|+ +...++.|.+.|..+++.
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 556666 455 555 444688899999988764
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4.1e-11 Score=101.77 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=126.2
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC----ee-
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR----KC- 225 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~----~~- 225 (430)
...++|++.-..++ +..|..|++||-+.... .++......+..+++.+.+.. +++|+.. -|.+|..... ..
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc
Confidence 44566766444445 88899999999887442 344444555666777776665 7777765 5889975421 11
Q ss_pred ---------eEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 226 ---------SQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 226 ---------~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+....+| .+|++|.|+++ ..+++++ .|..|.+||..++..+.-... ..+.+.-+.|+|||.+|+++.
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEEec
Confidence 1122344 58999999976 6777776 567899999999887655533 456899999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 295 TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 295 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
-|+..++|+..............+.|.... |+|+|++|+-..
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtac-WspcGsfLLf~~ 299 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTAC-WSPCGSFLLFAC 299 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeee-ecCCCCEEEEEE
Confidence 999999996654333333333446888887 999999775443
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=6.5e-11 Score=106.89 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=146.6
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecC---CCCeEEEEec------C--------------C-CEEEEEeCCCeEEEEeC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLS------E--------------D-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~------~--------------~-~~l~~~~~dg~i~vwd~ 261 (430)
++....||.+++||...++....+... .+..++..|. | + ..++-|...|.|.+++.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 788889999999999988776665421 2233333331 1 2 46888999999999999
Q ss_pred CCCceeEEEe-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 262 SSDQRVATLR-STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 262 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..|+...++. +.|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.+....+.+++ ++|||..+++++ +
T Consensus 88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~-is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC-ISPDGKILLTAS--R 164 (541)
T ss_pred cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE-EcCCCCEEEecc--c
Confidence 9999988887 66889999999998888999999999999999999999999998888999998 999999999886 5
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c-----CeEE-EEe
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G-----MKKV-VTT 412 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~-----~~~l-~t~ 412 (430)
.|++||+++++.+..|.+|.+ +|.+++| + |.++ .++
T Consensus 165 ~ik~~~~~~kevv~~ftgh~s------------------------------------~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 165 QIKVLDIETKEVVITFTGHGS------------------------------------PVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred eEEEEEccCceEEEEecCCCc------------------------------------ceEEEEEEEeccccccceeeecc
Confidence 899999999999999987555 7777777 2 4554 445
Q ss_pred eCCCeEEEEEecC
Q 014104 413 HNSKYIRLWKFNY 425 (430)
Q Consensus 413 ~~Dg~v~vw~~~~ 425 (430)
..+..+.+|.+..
T Consensus 209 ~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 209 AAERGITVWVVEK 221 (541)
T ss_pred ccccceeEEEEEc
Confidence 5566678887754
No 242
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.41 E-value=4.8e-10 Score=104.28 Aligned_cols=261 Identities=12% Similarity=0.057 Sum_probs=169.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCcee----e
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFM----K 195 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~----~ 195 (430)
..++.++.++.+|.+..+|.++|+.+.....+......-.-.++..++++.++.+.-+|.++++.++........ .
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 345677888899999999999999988877654332211122454555888899999999999876544322100 0
Q ss_pred eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-------CeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc
Q 014104 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-------PVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
...-...+..++.++.+|.+..+|..+|+.+........ ....+..+| ++.++.++.+|.+..+|..+|+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 001111234477888899999999999987765532110 011111122 4567778889999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
.+.+... . ....+.. .+..++.++.+|.+..+|..+++.+.....-. ....+.. . .+.+|+.++.+|.|++
T Consensus 278 ~~W~~~~--~-~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 278 IVWKREY--G-SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV-L--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEeecC--C-CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE-E--ECCEEEEEeCCCEEEE
Confidence 8776542 1 1222222 45678888899999999999998876543211 1122222 2 2567888899999999
Q ss_pred EEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEe
Q 014104 345 LDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~ 423 (430)
.|..+|+.+.+...... .......+.+..|+.++.||.|..++.
T Consensus 350 ld~~tG~~~~~~~~~~~-----------------------------------~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKVDSS-----------------------------------GFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEcCCC-----------------------------------cceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999998887764322 011122234557888899999887764
No 243
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.40 E-value=8.6e-10 Score=102.60 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=150.5
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCcee--------EEE--EecCCCE-EEEEeCCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--------LVD--FDFDESK-IVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
.+.++.+++++.+|.+.-+|..+|+.+.......... .+. ...++.. ++++.++.+.-+|.++++..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 3457788888899999999999999887766433110 000 1113344 4478889999999999987765
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-EEecC---CCEEEEEeCCCeEEEEeCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSE---DQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-~~~~~---~~~l~~~~~dg~i~vwd~~~ 263 (430)
........ ......+..++++..+|.+..+|.++|+.+..+......+.. ..-+| ++.++.++.+|.+..+|..+
T Consensus 146 ~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred ccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 54332211 111123455778888999999999999998877643111100 00112 34677788899999999999
Q ss_pred CceeEEEecCCCC------CeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 264 DQRVATLRSTDCT------GIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 264 ~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
|+.+......... ....+..+| .+..++.++.+|.+..+|..+++.+.+.... ....+. ..+..++.
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~---~~~~~vy~ 299 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA---VDGGRIYL 299 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE---EECCEEEE
Confidence 9887665421110 001111122 3456777788999999999999888765422 112222 24567888
Q ss_pred EcCCCeEEEEEcCCCceEEEE
Q 014104 336 GGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++.+|.+..+|..+|+.+...
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcc
Confidence 889999999999999876543
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4e-10 Score=101.23 Aligned_cols=267 Identities=12% Similarity=0.138 Sum_probs=161.7
Q ss_pred ceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEE------EeC-----CeEEEEEcCC
Q 014104 114 GVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG------LIG-----TRICIWRRNG 181 (430)
Q Consensus 114 ~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~-----~~i~vwd~~~ 181 (430)
+++..++ ++|.+..-+.+..++|++..++..+.+.... ....+.|+|.+.+|.. ..+ -.+.+|++++
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 3455556 4567777888899999999988766555554 6777999999988752 222 3477999998
Q ss_pred CcccccCCCCcee-eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----------------
Q 014104 182 LRSVFPSREGTFM-KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---------------- 244 (430)
Q Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 244 (430)
+............ ....++.+.. +++--..+.+++|++...+.+. -+-|...|+.+.++|+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ceehhheehhhhcCcccccccchh-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 5433222111111 1222222222 2222334567777765422111 1112233333333332
Q ss_pred --------------------------------------CEEEEEe--CC---------CeEEEEeCCCCceeEEEecCCC
Q 014104 245 --------------------------------------QLIISGS--SL---------GSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 245 --------------------------------------~~l~~~~--~d---------g~i~vwd~~~~~~~~~~~~~~~ 275 (430)
.+|+.++ -| .++++.++....+...+. ..
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~ 270 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KE 270 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CC
Confidence 1222221 11 244444444223333333 46
Q ss_pred CCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC---CCeEEEEEcCCC
Q 014104 276 TGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI---DGVLRVLDQNTG 350 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~---dg~i~vwd~~~~ 350 (430)
++|.++.|+|+|+-+++ |-.-..+.|||++ +.++..+. .++-+.+- |+|.|++++.++- .|.|-|||+.+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~-fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAF-FNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceE-ECCCCCEEEEeecCCCCCceEEEeccch
Confidence 79999999999987664 5567789999998 66776554 35556665 9999999988774 488999999998
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeC------CCeEEEEEec
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHN------SKYIRLWKFN 424 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~------Dg~v~vw~~~ 424 (430)
+++..+..... .+..-+.||++++|+.. |+.++||++.
T Consensus 347 K~i~~~~a~~t------------------------------------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 347 KLIAKFKAANT------------------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhccccccCCc------------------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88888765332 22222227888877765 6889999976
Q ss_pred C
Q 014104 425 Y 425 (430)
Q Consensus 425 ~ 425 (430)
.
T Consensus 391 G 391 (566)
T KOG2315|consen 391 G 391 (566)
T ss_pred C
Confidence 3
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=1.7e-10 Score=95.45 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=143.1
Q ss_pred CCeEEEEecCCCeeEE--eee--cCCceeEEEEec---CCC-EEE-EEeCCeEEEEEcCCCcc--cccCCCCcee-----
Q 014104 131 DKVMRLWSLEGYKCVE--EYS--LPNAASLVDFDF---DES-KIV-GLIGTRICIWRRNGLRS--VFPSREGTFM----- 194 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~---~~~-~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~~----- 194 (430)
-|.+.+|++...+... ++. .+.+...+.|.. ++. .++ +-..|.|.++.....+. .+........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3677888877655433 222 123444455543 444 233 77789999998765432 2222222211
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCC-CCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLS-SDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~ 269 (430)
-.+.+...+..++++-.+|.+.+.+...... ++..+.|.-+.+..+|+. + +++++|++|+.+..||++ .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 1233444556699999999999666544433 447889999999999983 2 799999999999999999 4455554
Q ss_pred EecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCC--eEEEEcCCCeEEEE
Q 014104 270 LRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTS--TLVVGGIDGVLRVL 345 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~--~l~s~~~dg~i~vw 345 (430)
-...|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-.. .+.|+.+. .+|.-. .|+++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~-~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIK-HHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEE-ecchhhhHHHHHHHhcC-ceEE
Confidence 2333777899988875 467999999999999999995 677765443 37899998 766433 344443333 5666
Q ss_pred EcCCC
Q 014104 346 DQNTG 350 (430)
Q Consensus 346 d~~~~ 350 (430)
+...+
T Consensus 282 ~~~~~ 286 (339)
T KOG0280|consen 282 DSSDK 286 (339)
T ss_pred Eeccc
Confidence 65543
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=7.1e-10 Score=104.39 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=138.2
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 206 (430)
..|.++|....................|+||++.|+ +... ..|.+||+.+++.. .....+. .....+.+++..+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEE
Confidence 367888876544433333334466688999999998 4432 47999999887533 2222222 2346677777765
Q ss_pred E-EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.++ .|++||+.+++.. .+..+........|+|+ +.++..+. ++ .|.++|+.+++.. .+.. +...+.
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~ 325 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNA 325 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCcc
Confidence 5 444444 5889999877543 34445455556788876 66665543 33 6888898876643 3332 344677
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~ 353 (430)
...|+|+|++++.++.++ .|.+||+.++... .+... ....... |+|+|++|+..+.++ .+++.+.. +...
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~-~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~ 401 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPS-FAPNGRMILYATTRGGRGVLGLVSTD-GRFR 401 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCce-ECCCCCEEEEEEeCCCcEEEEEEECC-Ccee
Confidence 889999999999887765 7999999875432 22222 2233445 899999888777553 45555543 5544
Q ss_pred EEEE
Q 014104 354 SRCV 357 (430)
Q Consensus 354 ~~~~ 357 (430)
..+.
T Consensus 402 ~~~~ 405 (417)
T TIGR02800 402 ARLP 405 (417)
T ss_pred eECC
Confidence 4443
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=2.4e-08 Score=90.91 Aligned_cols=264 Identities=12% Similarity=0.149 Sum_probs=163.3
Q ss_pred EEEEeCC----CeEEEEec--CCCee--EEeeecCCceeEEEEecCCCEEEEE-e----CCeEEEEEcCCC--cccc--c
Q 014104 125 ILTGVGD----KVMRLWSL--EGYKC--VEEYSLPNAASLVDFDFDESKIVGL-I----GTRICIWRRNGL--RSVF--P 187 (430)
Q Consensus 125 l~s~~~d----g~i~iwd~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~i~vwd~~~~--~~~~--~ 187 (430)
++.|+.. +.|.+|++ ++++. +..+........++++++++.|++. . ++.|..|++... .... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 78998887 45544 3344455667779999999999843 3 468999988764 3211 1
Q ss_pred CC-CCceeeeeEEEEcCCceEEEe-cCCeEEEEECCC-CeeeEE---ee----------cCCCCeEEEEecCC-CEEEEE
Q 014104 188 SR-EGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQI---IR----------MHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~-~~l~~~ 250 (430)
.. .+.....+++.+++..++++. .+|.|.++++.. +..... +. .......++.++|+ +++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 11 222222344445666666665 589999999976 433222 21 11235688999987 655554
Q ss_pred e-CCCeEEEEeCCCCc--e--eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCC--CCc--eeeeeecC----
Q 014104 251 S-SLGSIAISGLSSDQ--R--VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLR--TMK--SLWETRIS---- 316 (430)
Q Consensus 251 ~-~dg~i~vwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~---- 316 (430)
. ....|.+|++.... . ...+........+.+.|+|+++++++.. .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 3 44589999987654 3 2334433566899999999999887655 47789999988 332 22222211
Q ss_pred --CCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcC--CCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 317 --PNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQN--TGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 317 --~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~--~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
......+. ++|||++|+++. ..+.|.+|++. +|++ +..+....
T Consensus 242 ~~~~~~~~i~-ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G----------------------------- 291 (345)
T PF10282_consen 242 TGENAPAEIA-ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG----------------------------- 291 (345)
T ss_dssp CSSSSEEEEE-E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS-----------------------------
T ss_pred cccCCceeEE-EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC-----------------------------
Confidence 12567787 999999887765 66789999993 3443 22222111
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEecC
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFNY 425 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~~ 425 (430)
..-..+++ +|++|+++. .++.|.+|+++.
T Consensus 292 -------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 292 -------KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred -------CCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 12456666 688776665 677999998853
No 248
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.36 E-value=5.9e-13 Score=81.94 Aligned_cols=46 Identities=41% Similarity=0.577 Sum_probs=40.9
Q ss_pred ccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
+..||+|++.+||+||++.|+.++++|||.|+.++.++.+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 4689999999999999999999999999999999998899999874
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.7e-10 Score=105.12 Aligned_cols=217 Identities=14% Similarity=0.004 Sum_probs=138.7
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeC---CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC 175 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~ 175 (430)
.+.+..|...+.+..| +|| .|+..+. +..|.+||+.+++........+.....+|+|||+.|+ . ..++ .|.
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 3456778888999999 566 6666553 4689999999887644333344555689999999887 3 3344 477
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+||++++................+++++..++..+. +| .|+++|+.+++.. .+..+.+.+....|+|+ +.++..+
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEE
Confidence 889887764322222233344677788877776653 33 6888898766543 44334556677889976 6666654
Q ss_pred CC---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeeeeecCCCceEE
Q 014104 252 SL---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA------GYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 252 ~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
.+ ..|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..++++|+..+.. ..+. ..+.+..
T Consensus 353 ~~~~~~~i~~~d~~~~~-~~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~ 427 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSG-ERILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASD 427 (435)
T ss_pred cCCCceEEEEEECCCCc-eEeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccC
Confidence 33 368889986544 344432 2356788999999988765442 3588888865443 3333 2333444
Q ss_pred EEEeeC
Q 014104 323 LQHLQN 328 (430)
Q Consensus 323 l~~~s~ 328 (430)
.+ |+|
T Consensus 428 p~-Wsp 432 (435)
T PRK05137 428 PA-WSP 432 (435)
T ss_pred cc-cCC
Confidence 44 554
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=5.9e-09 Score=92.75 Aligned_cols=222 Identities=14% Similarity=0.145 Sum_probs=142.2
Q ss_pred CCCeEEEEecCCCeeEEeeecCCcee--------EEEEecCCCEEEEEe---CCeEEEEEcCCCcccccCCCCceeeeeE
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAAS--------LVDFDFDESKIVGLI---GTRICIWRRNGLRSVFPSREGTFMKGLC 198 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (430)
.+..|.+||..+++.+..+..+.... .+++++||+.++... ++.|.+.|+.+++.+..........++.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 47899999999999999998754433 799999999988333 7899999999988654333222111111
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-Ceee-EE---eecCCCCeEE-EEecC-C-CEEEEEeCCCeEEEEeCCC-----Cc
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCS-QI---IRMHCAPVTS-LSLSE-D-QLIISGSSLGSIAISGLSS-----DQ 265 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~---~~~~~~~i~~-~~~~~-~-~~l~~~~~dg~i~vwd~~~-----~~ 265 (430)
.......+-+.||......+.+ |+.. .. +.....++.. -.+.+ + ..+..... |+|.+.|+.. ..
T Consensus 155 --t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 155 --TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP 231 (352)
T ss_pred --ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc
Confidence 1111133344555554433322 2211 11 1110011100 02333 4 45544444 9999999643 23
Q ss_pred eeEEEecC------CCCCeEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 266 RVATLRST------DCTGIKTLCYNPCSRLVFAGT----------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 266 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
....+... ..+...-++++|+++.+++.. ..+.|.++|..+++.+..+... ..+..++ ++||
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~ia-vS~D 309 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSIN-VSQD 309 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEE-ECCC
Confidence 23322211 223445599999999888743 2247999999999999888753 5788998 9999
Q ss_pred CC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 330 TS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 330 ~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
++ +|++.. .++.|.+.|+.+++.++++
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99 887666 6788999999999999998
No 251
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.35 E-value=6.4e-09 Score=89.85 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=144.9
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeE-E-EEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASL-V-DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
+|+|..||..+|+.+........... . ...+++..++ +..++.+..||..+++.++........... ....+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccccc
Confidence 68999999999999988876321222 2 1333555555 779999999999999866544332221111 244566688
Q ss_pred EEecCCeEEEEECCCCeeeEEe-ecCCC-----CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC----
Q 014104 208 VGCEDGTARVFDMYSRKCSQII-RMHCA-----PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG---- 277 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~-----~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---- 277 (430)
+++.++.+..+|..+|+.+... ..... ......+. ++.++.+..++.|..+|+++|+.+..........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 8888899999999999998884 32211 11122222 5678888889999999999999988887522111
Q ss_pred -----e-EEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 278 -----I-KTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 278 -----v-~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+ ..+.+. ++ .++.++.++. +.+ |+.+++.+.+.. ...+..+ ..+++..|+.++.++.|..||+.+|
T Consensus 160 ~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 160 SSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC--EECCCTEEEEEETTTEEEEEETTTT
T ss_pred eeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC--ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1 222332 44 6777777775 555 999998775433 2333332 3356778888889999999999999
Q ss_pred ceEEE
Q 014104 351 EVLSR 355 (430)
Q Consensus 351 ~~~~~ 355 (430)
+.+.+
T Consensus 233 ~~~W~ 237 (238)
T PF13360_consen 233 KVVWQ 237 (238)
T ss_dssp EEEEE
T ss_pred CEEeE
Confidence 88754
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=124.13 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=138.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
|-..|.++.- |.. +.+||+.||.|++|....++.+..+...+...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~--------------------------------- 2253 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR--------------------------------- 2253 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch---------------------------------
Confidence 3344444443 222 77788888888888777766665554322111
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEe---CCCeEEEEeCCCCc
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS---SLGSIAISGLSSDQ 265 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~ 265 (430)
+....++..|+.+.++..||.+.+|.+. .++....+.|.....++.|-. ..+++++ .++.+.+||..-..
T Consensus 2254 -----vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2254 -----VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred -----hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCc
Confidence 1122233344446677778888888874 566666777888888888754 4555553 57899999975433
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...-+...|.+.++++++-|..+.|++|+.+|.|++||++..+.++.++. +. ...++++|+..|.++||
T Consensus 2327 ~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2327 MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEE
Confidence 22222245999999999999999999999999999999998887776654 22 45789999999999999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
++.....+.++..
T Consensus 2396 ~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2396 RLSEFGLLHTFPS 2408 (2439)
T ss_pred EccccchhhcCch
Confidence 9998777777764
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.8e-09 Score=101.68 Aligned_cols=220 Identities=16% Similarity=0.053 Sum_probs=135.0
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe-C--CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-G--TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV- 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 207 (430)
.+.++|.+.............+....|+|||+.|+ .+. + ..|.+||+.+++...............+++++..++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 66777876654433334445566789999999988 443 2 358899998876422221122223467778888765
Q ss_pred EEecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 208 VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 208 ~~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
+.+.+|. |+++|+.+++.. .+..+........|+|+ +.++..+ .++ .|.++|+.+++...... ........
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~~~ 355 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNLGG 355 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCcCe
Confidence 4556664 888898877653 44445556678899976 5555444 333 57777887776543322 22233456
Q ss_pred EEecCCCEEEEEeC-CC--eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC-C--eEEEEEcCCCceEEE
Q 014104 282 CYNPCSRLVFAGTT-AG--YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID-G--VLRVLDQNTGEVLSR 355 (430)
Q Consensus 282 ~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~ 355 (430)
+|+|+|++|+..+. ++ .|.++|+.+++.. .+... ....... |+|+|+.|+..+.+ | .+++++. +|...+.
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps-~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPS-VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCce-ECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 89999998886554 33 4666788877543 22222 1122345 89999988765533 3 3777786 4666666
Q ss_pred EEec
Q 014104 356 CVMD 359 (430)
Q Consensus 356 ~~~~ 359 (430)
+..+
T Consensus 432 l~~~ 435 (448)
T PRK04792 432 LPAG 435 (448)
T ss_pred CcCC
Confidence 6543
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.4e-09 Score=102.63 Aligned_cols=218 Identities=15% Similarity=0.041 Sum_probs=136.2
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV- 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 207 (430)
.|.++|.+.+................|+|||+.|+ .+.+ ..|.+||+++++...............+++++..++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 47788887655443334445566789999999988 4432 468999998876432222122223467777777765
Q ss_pred EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 208 VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 208 ~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
+...+| .|+++|+.+++.. .+..+........|+|+ +.++..+ .++ .|.++|+.+++...... ........
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~ 336 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARP 336 (430)
T ss_pred EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccce
Confidence 444454 6888899887654 44445556667889976 5555544 333 68888888777543322 12234457
Q ss_pred EEecCCCEEEEEeCC-C--eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEE
Q 014104 282 CYNPCSRLVFAGTTA-G--YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 282 ~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~ 355 (430)
.|+|+|+.++....+ + .|.++|+.+++.. .+.. ........ |+|+|+.++..+.+ ..+.++++. |...+.
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~-~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~ 412 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPS-VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLP 412 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 899999998866543 3 5888999877543 2221 11222445 99999988776643 356777775 444444
Q ss_pred EE
Q 014104 356 CV 357 (430)
Q Consensus 356 ~~ 357 (430)
+.
T Consensus 413 l~ 414 (430)
T PRK00178 413 LP 414 (430)
T ss_pred Cc
Confidence 44
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.3e-10 Score=105.42 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=133.7
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEE-
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW- 177 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vw- 177 (430)
+.+..+...+.+.+| |+| .|+..+.+ ..|.+||+.+++.......+.......|+|||+.|+ .+.++...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344566778888888 566 67666542 469999999887654333344456789999999887 3556665555
Q ss_pred -EcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEE--ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 178 -RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVF--DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 178 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
|+.++................+++++..++..+. +|...+| ++.+++.. .+..+........|+|+ +.++..+.
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEc
Confidence 4554442211111222334567888887665553 4555555 44454432 22222333446789976 77776665
Q ss_pred CC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 253 LG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 253 dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
++ .|.+||+.+++... +.. ........|+|+|+.|+..+.++ .+.+.++. ++....+..+.+.+...+ |
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~-w 422 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPS-W 422 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCc-c
Confidence 44 69999998877543 332 22346789999999888766543 36666663 555555655556666666 6
Q ss_pred eC
Q 014104 327 QN 328 (430)
Q Consensus 327 s~ 328 (430)
+|
T Consensus 423 sp 424 (427)
T PRK02889 423 GP 424 (427)
T ss_pred CC
Confidence 65
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=102.00 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=102.1
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecC
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH 232 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~ 232 (430)
..+|+|+|+++++..+-.+.+-|.++-+. ++.. -.. +..+.+..++-. +.....++.|.+|++...+-...+..-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldk-i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDK-IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHH-hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 57899999999988888999999888763 2211 111 122445555554 667788999999999988887888877
Q ss_pred CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 233 ~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
...+.++.|+|+ .++.+...+-.|.+|.+.+.+....-. ....+..++|+|+|++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeec
Confidence 889999999987 466777789999999998866543322 3346789999999999887754
No 257
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.32 E-value=1.6e-09 Score=93.71 Aligned_cols=217 Identities=15% Similarity=0.136 Sum_probs=143.4
Q ss_pred CCeEEEEEcCCCcccccCCCCc-eeeeeE-EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEE
Q 014104 171 GTRICIWRRNGLRSVFPSREGT-FMKGLC-MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLII 248 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 248 (430)
+|.|..||..+++.++....+. .....+ ....++.+++++.++.+..||..+|+.+..+.. .+.+.......++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecccccc
Confidence 5788889998888665543221 112222 333677788889999999999999999888775 2322211222445677
Q ss_pred EEeCCCeEEEEeCCCCceeEEE-ecCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc------
Q 014104 249 SGSSLGSIAISGLSSDQRVATL-RSTDC--TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV------ 319 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 319 (430)
.++.++.+..+|..+|+.+... ..... ...........+..++++..++.|..+|+++|+.+.........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 7778889999999999999884 32111 11222333334788899988999999999999998887664322
Q ss_pred ----eEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCC
Q 014104 320 ----VYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKT 394 (430)
Q Consensus 320 ----v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~ 394 (430)
+..-. ...++ .++.++.++. +.+ |+.+++.+. .....
T Consensus 161 ~~~~~~~~~-~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~--------------------------------- 202 (238)
T PF13360_consen 161 SFSDINGSP-VISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPIS--------------------------------- 202 (238)
T ss_dssp EETTEEEEE-ECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS---------------------------------
T ss_pred eecccccce-EEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCC---------------------------------
Confidence 11222 22344 7777777775 555 999998664 22111
Q ss_pred CCCCeeE-EEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 395 IRPPITC-LAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 395 h~~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
.+.. ...++..|+.++.|+.|..||+++|+..
T Consensus 203 ---~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 203 ---GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ----ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ---CccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 2333 4456777777779999999999999753
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=4.4e-10 Score=95.02 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=165.8
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCC-Ce----eEEeeecC-------------CceeEEEEecCCC---EEE
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEG-YK----CVEEYSLP-------------NAASLVDFDFDES---KIV 167 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~----~~~~~~~~-------------~~~~~~~~~~~~~---~l~ 167 (430)
-.+-|.++.|. .| +|+||..+|.|.++.-+. .+ ....++.| +.+.-+.|.++++ +|+
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678899993 45 999999999999995332 11 22223222 2344466666554 344
Q ss_pred EEeCCeEEEEEcCCCcccccCC----CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEec
Q 014104 168 GLIGTRICIWRRNGLRSVFPSR----EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLS 242 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~ 242 (430)
.+.|.+|++|.+.......... .+....+..+. ..+.+..|-.+. ..+.+.+ ..|+.-|.++.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr----~p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR----LPVEGRHDLEVE------ASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee----ceeeccccceee------eeeeeeccccceeEeeeeeec
Confidence 8999999999987544222110 00000000000 001111110000 0122222 3578889999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCceeEEE---ecC----CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce----
Q 014104 243 ED-QLIISGSSLGSIAISGLSSDQRVATL---RST----DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS---- 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~----~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---- 309 (430)
.+ +.+++ .+|=.|-+|+++-...-..+ +.+ ...-|++..|+|.. +.++-.+..|+|++.|++...+
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred CccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 77 55554 56889999998743332222 210 11257888999965 5677778899999999984321
Q ss_pred --eee----------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc-CCCceEEEEEeccCcc--eeeeccCCceE
Q 014104 310 --LWE----------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ-NTGEVLSRCVMDIGSA--SSSSNKVSGVI 374 (430)
Q Consensus 310 --~~~----------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~--~~~~~s~d~~v 374 (430)
+.+ +..--..|..+. |+++|+++++-.. -+|++||+ ...+++.+++.|.... .....-.|...
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvK-Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVK-FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceE-EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 111 111124678888 9999999998754 58999999 4567888888776521 00111111110
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.-..++|+ +.++.|||....++++++..|.
T Consensus 331 -----------------------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 -----------------------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -----------------------heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 11235564 4589999999999999977664
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=3.7e-09 Score=99.54 Aligned_cols=210 Identities=14% Similarity=0.051 Sum_probs=130.0
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeC--CeEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIG--TRICI 176 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~--~~i~v 176 (430)
+.+..+...+....| ++| +|+.++.+ ..|.+||+.+++..............+|+||++.|+ . ..+ ..|.+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344556666777778 566 66666543 489999999886554433444455689999999887 3 333 35889
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
||+.++................+.+++..++..+. ++ .|.++|+.+++.. .+..+...+....|+|+ +.++.++.
T Consensus 263 ~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 263 MDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred EECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEc
Confidence 99987653222111122223456666776665554 33 6888898776543 44445566778899976 77777776
Q ss_pred CC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCce
Q 014104 253 LG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 253 dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
++ .|.+||+.++.. ..+.. ........|+|+|+.|+..+.++ .+++.+.. ++....+..+.+.+
T Consensus 342 ~~~~~~i~~~d~~~~~~-~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE-RVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDV 411 (417)
T ss_pred cCCceEEEEEeCCCCCe-EEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCc
Confidence 65 899999987654 33332 12344568999999888776654 35555543 44444444333333
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=7.7e-11 Score=105.56 Aligned_cols=215 Identities=14% Similarity=0.159 Sum_probs=146.8
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-C------eeEEeeecC-CceeEEEEecCCCEEEEEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-Y------KCVEEYSLP-NAASLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 172 (430)
..+..+.||+..|..++- ++. -+++++.|.+|++|.+.. + .+..++..| ..+..+.|-.+
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~---------- 795 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD---------- 795 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec----------
Confidence 467788999999999866 444 899999999999998763 1 122233322 11111222111
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC---CEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~---~~l 247 (430)
.-..++.||.|.+||.--++.+..+. ...+.+..+..-++ ..+
T Consensus 796 --------------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~il 843 (1034)
T KOG4190|consen 796 --------------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHIL 843 (1034)
T ss_pred --------------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchhe
Confidence 12345667889999876666554332 11223333333332 344
Q ss_pred EE-EeCCCeEEEEeCCCCceeEEEecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 248 IS-GSSLGSIAISGLSSDQRVATLRST----DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 248 ~~-~~~dg~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+. ++...+|+++|.+.+.....++.. ....+.++++.|.|+.++++-.+|.|.+.|.++|+.+..++.-......
T Consensus 844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq 923 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ 923 (1034)
T ss_pred eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh
Confidence 44 478899999999988876665532 2346899999999999999999999999999999999888766555555
Q ss_pred EEEeeCCCCeEEEEcCCCeEEE-EEcCCCceEEEEEeccC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRV-LDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~ 361 (430)
++ .|..+.|+....|.++.+ |..-+|....+.+..+.
T Consensus 924 la--apsdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 924 LA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred hc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 55 366778888888999998 98877776665554333
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.7e-10 Score=106.66 Aligned_cols=277 Identities=12% Similarity=0.079 Sum_probs=171.7
Q ss_pred eeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc---cccCCCCceeeeeEEEEcC--CceEEEecCCeEEEEECC
Q 014104 147 EYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS---VFPSREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~ 221 (430)
.++.......+.++|.|+-++.+..-.+.+.|+...-. .+.......+....|++.. +.-++......-.+|++.
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 34445667778899999988855555566777765431 1111122222223333332 223333444456688875
Q ss_pred C---CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 222 S---RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 222 ~---~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
. ......+.+|...|+.+.|++. ..+++++.|-.+..||+++... +..+.. -......|+|+.....+.+.+.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhcc
Confidence 3 2344567799999999999964 7999999999999999997643 444443 4446778899865555555566
Q ss_pred CCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcc---------
Q 014104 296 AGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSA--------- 363 (430)
Q Consensus 296 dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~--------- 363 (430)
...|.+||.+.| .++..+++|...|+++.+-..-...+.+++.||+|++||...... -++... ...+
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFG 257 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcceeccccccC
Confidence 777999999875 567788999899999883333445788999999999999874322 111111 1111
Q ss_pred --eeeeccCCc-eEEEeecc------cccCCcccccCCCCCCCCeeEEEE------c------CeEEEEeeCCCeEEEEE
Q 014104 364 --SSSSNKVSG-VIERNEGR------RLSAGCCIDRIPKTIRPPITCLAV------G------MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 364 --~~~~~s~d~-~v~~~~~~------~~~~~~~~~~~~~~h~~~v~~v~~------~------~~~l~t~~~Dg~v~vw~ 422 (430)
+.+-...-+ .+....-. ...........+.+|.+.|..+-| + .-.|+|-+.|..+|+|.
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 111111111 22111111 111122233344778888876665 1 23499999999999998
Q ss_pred ecC
Q 014104 423 FNY 425 (430)
Q Consensus 423 ~~~ 425 (430)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 864
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.1e-08 Score=93.74 Aligned_cols=220 Identities=12% Similarity=-0.019 Sum_probs=131.7
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCE--EE--EEeC--CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IV--GLIG--TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~--~~~~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
..|.+.|.+.+..............-.|+|||+. ++ +..+ ..|.+.++.+++...............+++++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 3567777776554433333344455799999975 32 2223 4688889988764322222222234678888888
Q ss_pred eEEEec-----CCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEE--eCCC-CceeEEEec
Q 014104 206 AVVGCE-----DGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAIS--GLSS-DQRVATLRS 272 (430)
Q Consensus 206 l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vw--d~~~-~~~~~~~~~ 272 (430)
|+..+. +..+..|++.++ +.......+.+.....+|+|+ +.|+..+ .+|...+| ++.. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 665442 223444776653 333333333344567899987 5566554 46654454 4432 233344443
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC---CCeEEEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI---DGVLRVLD 346 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~---dg~i~vwd 346 (430)
....+....|+|||+.|+..+.+ ..|.+||+.+++... +......+.... |+|||+.|+..+. ...|+++|
T Consensus 325 -~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~-wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 325 -KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPS-WAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceE-ECCCCCEEEEEECCCCCceEEEEE
Confidence 33467788999999988865443 469999998876543 332334556677 9999998875432 35788999
Q ss_pred cCCCceEE
Q 014104 347 QNTGEVLS 354 (430)
Q Consensus 347 ~~~~~~~~ 354 (430)
+.+++...
T Consensus 402 l~~g~~~~ 409 (428)
T PRK01029 402 LITKKTRK 409 (428)
T ss_pred CCCCCEEE
Confidence 98776543
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.4e-09 Score=91.99 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=157.0
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCC-CcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEEC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNG-LRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDM 220 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~ 220 (430)
..++++ +.+.....-|....++ .+.|.++++|--.. ++.-..........+.++.+. ...|++|-.+|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 444444 2233333344444455 88899999996543 332111111111223334433 334899999999988865
Q ss_pred C----CCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 221 Y----SRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 221 ~----~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
. .....+....|...+..+-|+ +..++++.+.|..+.---.+.+..+..+. ....-+++.+.-. +.+.|..
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceeeE--EEEeccc
Confidence 3 334556677899999999998 55899999999887666666666544333 1112222333222 5667777
Q ss_pred CCeEEEEeCC--CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCc
Q 014104 296 AGYASCWDLR--TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 296 dg~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~ 372 (430)
.|.|.+..+. .-.++.++.+|.+.+.++. |.+....|++|..|..+.+||+.-.+- ...+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~-Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~--------------- 237 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLK-WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ--------------- 237 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEE-EcCCCcEEEeccccCceEEEeccCCcceeeeec---------------
Confidence 7777766543 4567888999999999999 999999999999999999999974332 22232
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+|...|..+.. .-+.+++++.||.|-+|+.+..
T Consensus 238 ---------------------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 ---------------------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ---------------------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 34445666555 3567999999999999998643
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.20 E-value=6.3e-10 Score=90.55 Aligned_cols=284 Identities=16% Similarity=0.229 Sum_probs=157.4
Q ss_pred hcccCCEeEEEEecccc-ceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 97 ALEEGRIDIDQWKAHSV-GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
.|..+...+.++.+|.+ .|+.+.+..+ .|+++..++.+.......+.+....+....+.-
T Consensus 20 ~~~~~t~~vD~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~------------------ 81 (319)
T KOG4714|consen 20 EVGSSTPLVDEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDP------------------ 81 (319)
T ss_pred eeeccCcchhhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCc------------------
Confidence 34445556666777766 2445555555 788888888777766555444432221111100
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEee-cCCCCeEEEEecCCCEEEEEe-
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIR-MHCAPVTSLSLSEDQLIISGS- 251 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-~~~~~i~~~~~~~~~~l~~~~- 251 (430)
+| .+..+ ............+..+++++.||.+.+++.+.-.. .+.+. .|.+.....-.+..+++.++.
T Consensus 82 -~~-------~~a~~-sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~ 152 (319)
T KOG4714|consen 82 -FK-------VLAKN-SEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGC 152 (319)
T ss_pred -ee-------eeecc-CCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCc
Confidence 00 01101 11111222333455589999999999998654111 11111 111111111111233343332
Q ss_pred ----CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEE
Q 014104 252 ----SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~ 325 (430)
.-+..+.|+++..+.+..-.. ....|.+++-+|..+ .+++|+.||.+.+||.++.. +...+..|..+++.+.
T Consensus 153 g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~- 230 (319)
T KOG4714|consen 153 GNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH- 230 (319)
T ss_pred ceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee-
Confidence 223455666553332221111 223599999999765 56688999999999999864 3445788999999998
Q ss_pred eeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe-ecccccCCcccccCCCCCCCCeeEEE
Q 014104 326 LQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN-EGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 326 ~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+| ++..|++++.||.+-.||..+ +.+. +..... .+..| .+.....-..+..+...-...|+++.
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~-~~l~-i~~~~s-----------~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST-TFLS-ISNQAS-----------VISSWLSGDPVKSRIEITSLLPSRSLSINSFD 297 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC-ceEE-ecCccc-----------cccccccCCcccceEeeeccccccceeeeeee
Confidence 666 567999999999999999774 3333 111111 00011 01111111222333333445788888
Q ss_pred EcCeEEEEeeCCCeEEEEE
Q 014104 404 VGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 404 ~~~~~l~t~~~Dg~v~vw~ 422 (430)
..|..|++|++-+.|.+++
T Consensus 298 V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccCceEEeccccceEEEec
Confidence 8899999999999998875
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.19 E-value=6.6e-07 Score=81.58 Aligned_cols=239 Identities=11% Similarity=0.103 Sum_probs=149.2
Q ss_pred eEEEe-cCC-eEEEEeC----CCeEEEEecCCC--e--eEEeee-cCCceeEEEEecCCCEEEEE--eCCeEEEEEcCCC
Q 014104 116 DQCRM-KRG-LILTGVG----DKVMRLWSLEGY--K--CVEEYS-LPNAASLVDFDFDESKIVGL--IGTRICIWRRNGL 182 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~----dg~i~iwd~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~i~vwd~~~~ 182 (430)
..+++ +++ +|+++.. ++.|..|++... + .+.... .......+++++++++|+.+ .+|.+.+++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 44555 444 7777765 579999987753 3 344444 34455669999999999843 4899999999863
Q ss_pred -cc-----ccc---------CCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCe--e--eEEee-cCCCCeEEEEe
Q 014104 183 -RS-----VFP---------SREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRK--C--SQIIR-MHCAPVTSLSL 241 (430)
Q Consensus 183 -~~-----~~~---------~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~--~~~~~-~~~~~i~~~~~ 241 (430)
.. ... .........+.+.+++..+++.. ....|.+|++.... . ...+. ........+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 21 110 01122233455666666655543 34589999987654 2 12222 23346789999
Q ss_pred cCC-CEE-EEEeCCCeEEEEeCC--CCce--eEEEec---CC--CCCeEEEEEecCCCEEEEEe-CCCeEEEEeCC--CC
Q 014104 242 SED-QLI-ISGSSLGSIAISGLS--SDQR--VATLRS---TD--CTGIKTLCYNPCSRLVFAGT-TAGYASCWDLR--TM 307 (430)
Q Consensus 242 ~~~-~~l-~~~~~dg~i~vwd~~--~~~~--~~~~~~---~~--~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~ 307 (430)
+|+ +++ ++.-.+++|.++++. ++.. +..+.. .. ......++++|+|++|+++. ..+.|.+|++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 987 554 445567889999988 4432 222221 11 12578899999999988765 46689999993 23
Q ss_pred c--eeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCceEEE
Q 014104 308 K--SLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEVLSR 355 (430)
Q Consensus 308 ~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~~~~ 355 (430)
+ .+..+.........++ ++|+|++|+++. .++.|.+|++ ++|.+...
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~-~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFA-FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TEEEEEEEEESSSSEEEEE-E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEEeCCCCCccEEE-EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 3 3334444344578888 999999998776 6678999976 46665443
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.6e-08 Score=95.45 Aligned_cols=217 Identities=9% Similarity=-0.020 Sum_probs=130.9
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICI 176 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~v 176 (430)
+.+..+...+....| ++| .|+..+.+ ..|.+||+.+++........+......|+|||+.|+ . ..++ .|.+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 345566677788888 566 66655543 368999999886554333333444589999999887 3 3344 5888
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
+|++++................+++++..++..+. +| .|+++|+.+++..... ..........|+|+ +.++..+.
T Consensus 272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEc
Confidence 89988764322222222333566777777655543 33 5778888777643322 12223345678876 66665553
Q ss_pred -CC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 253 -LG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 253 -dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
++ .|.++|+.+++.. .+.. ........|+|+|+.++..+.+ ..+.++++. +.....+..+.+.+...+ |
T Consensus 351 ~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~-w 425 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPS-W 425 (430)
T ss_pred cCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc-c
Confidence 33 5889999887653 3332 1222355899999988866543 347777775 333344444445555555 5
Q ss_pred eC
Q 014104 327 QN 328 (430)
Q Consensus 327 s~ 328 (430)
+|
T Consensus 426 s~ 427 (430)
T PRK00178 426 SP 427 (430)
T ss_pred CC
Confidence 54
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=4.7e-09 Score=87.06 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=145.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC------C-ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-c---cccCCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------N-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR-S---VFPSREG 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~---~~~~~~~ 191 (430)
.++-+..+|.|.++.....+....+.+- . ....+.|++.+..++ +-.+|.+.+-+..... . .++.|+-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 5667777899999876654444333321 1 133466777777777 6667888855544332 1 2233332
Q ss_pred ceeeeeEEEEcCCc-eEEEecCCeEEEEECC-CCeeeEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC-Cc
Q 014104 192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-SRKCSQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQ 265 (430)
Q Consensus 192 ~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-~~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~-~~ 265 (430)
+ .....+....|. +.+|+.|+.+..||++ .++.+.. .+.|...|.++.-+|. .++++|+.|..|++||.++ ++
T Consensus 167 E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 167 E-AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred e-eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 2 222334444454 8899999999999998 4455544 5678899999999853 6999999999999999984 56
Q ss_pred eeEEEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCc-----eeeeeecCCCceEEEEEeeCCCCeEEEEc-
Q 014104 266 RVATLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMK-----SLWETRISPNVVYSLQHLQNDTSTLVVGG- 337 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~v~~l~~~s~~~~~l~s~~- 337 (430)
++..-. ..+.|..+..+|.- ..|+++-.+| .+|.+...+. .....+.|.+-++.-. |......|+|++
T Consensus 246 Pl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D-Wd~~~~~lATCsF 321 (339)
T KOG0280|consen 246 PLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGD-WDSKDSFLATCSF 321 (339)
T ss_pred ccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccc-cccccceeeeeec
Confidence 665444 56789999999853 4566666666 7777776532 2334556666666665 433345688866
Q ss_pred CCCeEE-EEEcCCCc
Q 014104 338 IDGVLR-VLDQNTGE 351 (430)
Q Consensus 338 ~dg~i~-vwd~~~~~ 351 (430)
.|+.++ +|-.-+++
T Consensus 322 YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 322 YDKKIRQLWLHITGE 336 (339)
T ss_pred cccceeeeeeeccCC
Confidence 566655 77655544
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.5e-08 Score=95.35 Aligned_cols=212 Identities=14% Similarity=0.025 Sum_probs=125.4
Q ss_pred cccceeEEEe-cCC-eEEEEeC-CC--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCe--EEEEEcCC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTR--ICIWRRNG 181 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~--i~vwd~~~ 181 (430)
+...+.+..| ||| .|+..+. ++ .|.+||+.+++...............|+|||+.|+ ...++. |.++|+++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 3445667777 566 6665543 33 58888998876543322333344679999999887 344554 78888887
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG-- 254 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg-- 254 (430)
++...............|++++..++..+. ++ .|.++|+.+++... +..........+|+|+ +.++..+. ++
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence 763322222222334567777777655443 33 57777887776433 2222223345688876 66655543 34
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
.|.++|+.+++.. .+.. . .......|+|+|+.|+.... ++ .+++++. ++.....+..+.+.+...+ |+|
T Consensus 375 ~I~~~dl~~g~~~-~lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~-Wsp 446 (448)
T PRK04792 375 NIARQDLETGAMQ-VLTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA-WSP 446 (448)
T ss_pred EEEEEECCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc-cCC
Confidence 5666888877653 3332 1 12224479999998876544 33 3777776 4656666665555566665 665
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=7.8e-07 Score=76.56 Aligned_cols=216 Identities=11% Similarity=0.127 Sum_probs=139.6
Q ss_pred CCeEEEEecCC--C--eeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCC--CcccccC---CCCceeeee
Q 014104 131 DKVMRLWSLEG--Y--KCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNG--LRSVFPS---REGTFMKGL 197 (430)
Q Consensus 131 dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~--~~~~~~~---~~~~~~~~~ 197 (430)
+.-|.+|++.+ + ..+........+..++++++++.|. +.. +|.|.-|.++. ++..+.. ..+.....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999873 2 2334444567788899999999887 332 57788777765 4433221 122222345
Q ss_pred EEEEcCCceEEEec-CCeEEEEECCC-Cee---eEEeecCCCC----------eEEEEecCC-CEEEEEeC-CCeEEEEe
Q 014104 198 CMRYFDPEAVVGCE-DGTARVFDMYS-RKC---SQIIRMHCAP----------VTSLSLSED-QLIISGSS-LGSIAISG 260 (430)
Q Consensus 198 ~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~---~~~~~~~~~~----------i~~~~~~~~-~~l~~~~~-dg~i~vwd 260 (430)
++...+..++++.. .|.|.++-++. |.. +..+ .|.+. +....+.|+ +++++..- -..|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 66666666766655 48899998865 432 2222 35544 778888887 56666542 34799999
Q ss_pred CCCCceeEEE--ecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCC-ceeeeeecC---------CCceEEEEEee
Q 014104 261 LSSDQRVATL--RSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTM-KSLWETRIS---------PNVVYSLQHLQ 327 (430)
Q Consensus 261 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~---------~~~v~~l~~~s 327 (430)
+..|.....- .-......+.|.|+|++++..+.++ +++|.+|..... ..+.+++.+ ......+. ++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh-is 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH-IS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE-EC
Confidence 9877653221 1124557899999999998886654 889999988763 223333221 23455666 89
Q ss_pred CCCCeEEEEc-CCCeEEEEEcC
Q 014104 328 NDTSTLVVGG-IDGVLRVLDQN 348 (430)
Q Consensus 328 ~~~~~l~s~~-~dg~i~vwd~~ 348 (430)
+||++|.++. ....|-+|.+.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEc
Confidence 9999998886 23467777665
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.1e-08 Score=90.47 Aligned_cols=232 Identities=10% Similarity=0.138 Sum_probs=146.9
Q ss_pred eEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC--CEEE------EEeCCeEEEEEcCCCc--c
Q 014104 116 DQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--SKIV------GLIGTRICIWRRNGLR--S 184 (430)
Q Consensus 116 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~------~~~~~~i~vwd~~~~~--~ 184 (430)
++..|+ |+.++.=-..+.+.+|++.+-+.+..--+...+....++|-+ ..++ .+.-..+++|...-.. .
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 466674 334444444568999998874433322233556667777763 3333 2334679999876221 1
Q ss_pred cccCCCCceeee--eEEEEcCCc-e--EEEec---------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-E-E
Q 014104 185 VFPSREGTFMKG--LCMRYFDPE-A--VVGCE---------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-L-I 247 (430)
Q Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~-l--~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~-l 247 (430)
......-....- +.|...+.. | ++..- ..++++.+++...+.-.+. ..++|.++.|+++ . + +
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEE
Confidence 110000000111 222222222 2 22222 3468888887444444443 4789999999976 3 3 3
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
+.|-.-..+.+||++ +..+..+. .++=.++-|+|.|++++.++- .|.|-+||+.+.+++..+......+ ..
T Consensus 288 vyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~--~e 361 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV--FE 361 (566)
T ss_pred EEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE--EE
Confidence 445677899999986 77887774 456788999999999887664 4789999999999998887654433 33
Q ss_pred EeeCCCCeEEEEcC------CCeEEEEEcCCCceEEEE
Q 014104 325 HLQNDTSTLVVGGI------DGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 325 ~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~ 356 (430)
|+|||++++|+.. |+.++||+.. |..+..-
T Consensus 362 -W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~ 397 (566)
T KOG2315|consen 362 -WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK 397 (566)
T ss_pred -EcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh
Confidence 9999999998874 6889999986 6655433
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=2.1e-08 Score=82.20 Aligned_cols=196 Identities=9% Similarity=-0.036 Sum_probs=127.2
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCce---eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGTF---MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
+|+ ++..|++.+|...+.+........+. .-.-..+.....+..++.|.++++.+++-+..-.......-.+.+++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 444 55666777776665543222221111 11111122222377888899999988865433222221222378899
Q ss_pred ecCC-CEEEEEeCCCeEEEEeCCCC-ce-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-----e
Q 014104 241 LSED-QLIISGSSLGSIAISGLSSD-QR-VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-----E 312 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~vwd~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~ 312 (430)
++++ .++++.++...|..|.+... +. +..........-.+..|+.....+|++..||++.|||++...... +
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 9976 78888898899999988642 22 332333344566788999888999999999999999999754322 2
Q ss_pred eecCCCceEEEEEeeCCCC--eEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 313 TRISPNVVYSLQHLQNDTS--TLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
-..|.+++.... |++.|. +|+-.-.-+.+.+-|+++++..+.+...++
T Consensus 246 rp~hnGa~R~c~-Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 246 RPHHNGAFRVCR-FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred CCCCCCceEEEE-ecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 235778999988 998664 555555668899999999988777665433
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.1e-08 Score=93.00 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=170.3
Q ss_pred ccceeEEEec--CCeEEEEeCCCeEEEEecCCCee---------------EEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 112 SVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKC---------------VEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 112 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
.....|+.|+ .|+++.|+.||.++|-.+.+... -+++.+| ..+..+.|+.+.+.|. +..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456789995 45999999999999997765221 1345555 4567788998888888 67789
Q ss_pred eEEEEEcCCCc---ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEEecCC-CE
Q 014104 173 RICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 173 ~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~ 246 (430)
-|.+|-+-.+. .........++..++|..++..++....||.|.+=.+.. ..+. .+++ .-...+.|+++ ..
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch--heccceeecccHHH
Confidence 99999987765 345556667777788888888899999999998877643 3332 2222 23447889987 66
Q ss_pred EEEEeCCCeEEEEeCCCCc-------eeEEEecC---CCCCeEEEEEe--------cCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 247 IISGSSLGSIAISGLSSDQ-------RVATLRST---DCTGIKTLCYN--------PCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~-------~~~~~~~~---~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
++.+-.+|.+.++|....- +.....+. ....+-.+.|. |+...|+++..+|.+.+-.-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 7777788999999965321 11111111 11235555553 577899999999998887655433
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCC---------CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGID---------GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
....+... -.+.... |+++|..|+.++.+ +.|.+|..- |+.+.+++.....+..+++
T Consensus 251 ~Pvv~dtg-m~~vgak-Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 251 EPVVVDTG-MKIVGAK-WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred CCeEEecc-cEeecce-ecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEE
Confidence 32233322 5677888 99999999998854 356666643 7777777776655544443
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=2.2e-07 Score=95.89 Aligned_cols=246 Identities=15% Similarity=0.103 Sum_probs=149.7
Q ss_pred EEEEecCCC-EEE-EEeCCeEEEEEcCCCcccccCCCC------------c--eeeeeEEEEcCCceEEE-ecCCeEEEE
Q 014104 156 LVDFDFDES-KIV-GLIGTRICIWRRNGLRSVFPSREG------------T--FMKGLCMRYFDPEAVVG-CEDGTARVF 218 (430)
Q Consensus 156 ~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~l~~~-~~dg~i~vw 218 (430)
-+++++++. .++ -+..+.|.++|..+.........+ . ....+++...+..++++ ..++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 367777544 444 455678999998765432211100 0 11234444445555544 445789999
Q ss_pred ECCCCeeeEEeecC-----------------CCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecC------
Q 014104 219 DMYSRKCSQIIRMH-----------------CAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRST------ 273 (430)
Q Consensus 219 d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 273 (430)
|..++. +.++.+. -.....++++| + .++++.+.++.|++||..++... .+.+.
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 987654 3333210 11235789987 4 56677778899999998876542 22110
Q ss_pred --------CCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeeeee-------------cC--------CCceEEE
Q 014104 274 --------DCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLWETR-------------IS--------PNVVYSL 323 (430)
Q Consensus 274 --------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~-------------~~--------~~~v~~l 323 (430)
.-.....++++|+++.|+ +-..++.|++||+.++....... .+ .....++
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 012456799999998554 55667899999998764321100 00 1123577
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
+ ++++|..+++-+.++.|++||..++.... +.+... .+..||... .+.-.....++
T Consensus 810 a-vd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~-----~G~~dG~~~-----------------~a~l~~P~GIa 865 (1057)
T PLN02919 810 L-CAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGK-----AGFKDGKAL-----------------KAQLSEPAGLA 865 (1057)
T ss_pred e-EeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCC-----cCCCCCccc-----------------ccccCCceEEE
Confidence 7 88999988888899999999998765543 332111 122233210 11112445666
Q ss_pred E--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 404 V--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+ +|+.+++-+.+++|++||+.+++
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 6 58888998999999999998875
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=115.49 Aligned_cols=172 Identities=14% Similarity=0.136 Sum_probs=128.5
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..+..++|+.||.|++|.-..++.+..++. -+..|+.+.|+ .++.+..+..||.+.+|.+. .+.....+. |...
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~ 2294 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKA 2294 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCcc
Confidence 34556699999999999999888877766652 23788889998 56888888999999999987 455555554 7777
Q ss_pred eEEEEEecCCCEEEEEe---CCCeEEEEeCCC--C-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 278 IKTLCYNPCSRLVFAGT---TAGYASCWDLRT--M-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
...+.|-. ..+++++ .++.+.+||..- + ..+. ..|.+.+++++ +-|..+.|++|+.+|.|++||++..+
T Consensus 2295 ~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~-~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2295 LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLA-YAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred ccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEE-EcCcceEEEecCCcCcEEEeehHHHH
Confidence 88888854 5666654 467899999753 2 2333 78999999999 89999999999999999999999887
Q ss_pred eEEEEEeccCcceeeeccCCceEEEee
Q 014104 352 VLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 352 ~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
.+.+++.-....+.+.++..|.+.+|.
T Consensus 2370 l~h~~~~~~~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2370 LRHTFQALDTREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred HHHHhhhhhhhheeeccCcccceEEEE
Confidence 777776533333445555555554443
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=3.1e-07 Score=93.00 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=184.9
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEE----ecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC----
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLW----SLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN---- 180 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~---- 180 (430)
.+.|.++.+ ++. .++.+..+|.|.+. +..+.+....-....++.+++||||+..|+ ++.++++.+.+.+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 456778877 554 78888889999999 655544333333457899999999999999 8888887765421
Q ss_pred C---------------------CcccccCCC-----------------------CceeeeeEEEEcCCceEEEec-----
Q 014104 181 G---------------------LRSVFPSRE-----------------------GTFMKGLCMRYFDPEAVVGCE----- 211 (430)
Q Consensus 181 ~---------------------~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~----- 211 (430)
. .+..|.+.. ......++|..++.++++.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 0 001111110 011233566667777776654
Q ss_pred -CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC---CCeEEEEeCCCCceeEEEecC---CCCCeEEEEE
Q 014104 212 -DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRST---DCTGIKTLCY 283 (430)
Q Consensus 212 -dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~ 283 (430)
-..++||+-+ |+...+-+.-.+--.+++|-|. +++++.-. ...|.+|. ++|-....|.-. ....|..+.|
T Consensus 235 ~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 235 SRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred ceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE
Confidence 2579999964 7655544433444467899986 66666543 34677776 566665555532 3458999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCcee--eeeecC-CCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRTMKSL--WETRIS-PNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++++..||....|. |.+|-..+..-. +++... ...+..+. |+|... .|...+.+|.+..++..-.. ..-...
T Consensus 313 n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~-Wdpe~p~~L~v~t~~g~~~~~~~~~~v--~~s~~~ 388 (928)
T PF04762_consen 313 NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK-WDPEKPLRLHVLTSNGQYEIYDFAWDV--SRSPGS 388 (928)
T ss_pred CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE-ECCCCCCEEEEEecCCcEEEEEEEEEE--EecCCC
Confidence 99999999987766 999999886422 223322 13344476 887544 56667666777766653100 000000
Q ss_pred cCcceeeeccCCceE---EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 360 IGSASSSSNKVSGVI---ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 360 ~~~~~~~~~s~d~~v---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...-...++--||.- .......+|+.++...+.. ...|.+++| ++..+++-..||.|.+|....+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~--~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL--PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcC--CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 000011122223321 1222333444444433322 368999999 3555999999999999996543
No 276
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=1.4e-06 Score=71.61 Aligned_cols=294 Identities=10% Similarity=0.082 Sum_probs=164.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeee-eEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG-LCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 201 (430)
+++.|+..+.+.--|..+|....+-.....+..-++- -|++++ ++..|.+++.+.++++..+.......+.+ ..+.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~ 103 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF 103 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence 8888999999999999999888765554444443333 355555 99999999999999976544333322222 33445
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCe
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v 278 (430)
++..+..|+.|+..+..|..+..++...+--.+...+-++.++ ..++.+...|.+.--...+.. .+.... ..+++
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~--~~~Pi 181 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT--RFGPI 181 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh--cCCcc
Confidence 5666999999999999999999998877644333334445553 556666666766655555442 222111 12233
Q ss_pred EE--EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee-CCCCeEEEEcCCC--------eEEEEEc
Q 014104 279 KT--LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ-NDTSTLVVGGIDG--------VLRVLDQ 347 (430)
Q Consensus 279 ~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s-~~~~~l~s~~~dg--------~i~vwd~ 347 (430)
.+ ++. +..+..+.-||.+.-+| ..|+.+.++.. .++|+.--+-+ |..+.+..+..+. .-.+|..
T Consensus 182 F~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~ 256 (354)
T KOG4649|consen 182 FASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWAT 256 (354)
T ss_pred ccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEe
Confidence 22 111 23455556677666666 44555554332 23332211111 3323333333322 2346777
Q ss_pred CCCceEEEEE-------eccC----cceeeeccCCceEEEeecccc-c----CCcccccCCC-CCCCCeeE--EEEcCeE
Q 014104 348 NTGEVLSRCV-------MDIG----SASSSSNKVSGVIERNEGRRL-S----AGCCIDRIPK-TIRPPITC--LAVGMKK 408 (430)
Q Consensus 348 ~~~~~~~~~~-------~~~~----~~~~~~~s~d~~v~~~~~~~~-~----~~~~~~~~~~-~h~~~v~~--v~~~~~~ 408 (430)
++|....... .|.- ...+...+.||.+.+...... . .+.+++.+.. .-++.|.+ +-++ .+
T Consensus 257 ~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-gr 335 (354)
T KOG4649|consen 257 QSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIID-GR 335 (354)
T ss_pred cCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEEc-cE
Confidence 7764433332 2322 225667788898865432211 1 1111111100 00011111 1123 45
Q ss_pred EEEeeCCCeEEEEEecCC
Q 014104 409 VVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~~~ 426 (430)
|+.|+.|..|+-||+++.
T Consensus 336 l~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 336 LLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred EEEEEccCeEEEEecccc
Confidence 888899999999999864
No 277
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.12 E-value=1.4e-07 Score=89.92 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=169.1
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEE--Ee-cC-CCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVD--FD-FD-ESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~--~~-~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.+.++.++.++.++.+.-.|..+|+.+..+..... ...+. .. .+ +..++++.++.|.-+|.++++.++...
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 34577888888899999999999998877764322 00010 11 13 444458889999999999998765543
Q ss_pred CCcee-----eeeEEEEcCCceEEEe---------cCCeEEEEECCCCeeeEEeecCCC--------------------C
Q 014104 190 EGTFM-----KGLCMRYFDPEAVVGC---------EDGTARVFDMYSRKCSQIIRMHCA--------------------P 235 (430)
Q Consensus 190 ~~~~~-----~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~--------------------~ 235 (430)
..... ........+..++.++ .+|.+..+|..+|+.+..++.... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 32210 0011111233455554 368899999999998887754211 0
Q ss_pred e-EEEEecC-CCEEEEEeCCC------------------eEEEEeCCCCceeEEEecCCCC-----CeEEEEEe----cC
Q 014104 236 V-TSLSLSE-DQLIISGSSLG------------------SIAISGLSSDQRVATLRSTDCT-----GIKTLCYN----PC 286 (430)
Q Consensus 236 i-~~~~~~~-~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~----~~ 286 (430)
+ ...++.+ +..++.++.++ .+.-+|..+|+.+..+...+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1233433 36777777665 7999999999999887632210 00001111 13
Q ss_pred CC---EEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE------------------cCCCeEEEE
Q 014104 287 SR---LVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG------------------GIDGVLRVL 345 (430)
Q Consensus 287 ~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~------------------~~dg~i~vw 345 (430)
|. .+++++.+|.+..+|.++|+.+....... ..+. .+| ..++.+ ..+|.|.-.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~-~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMA-YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccc-cCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 33 67788899999999999999988765321 1222 333 223332 246788888
Q ss_pred EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 346 DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|+.+|+.+.+......... + .. ... .....+...+..|+.++.||.|..+|.++
T Consensus 372 D~~tG~~~W~~~~~~~~~~---------------~---------~~-g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDS---------------W---------NI-GFP-HWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred eCCCCcEeeEeeCCccccc---------------c---------cc-CCc-ccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 9999988777654311000 0 00 000 01122445677788888899999989888
Q ss_pred CCcC
Q 014104 426 SDKY 429 (430)
Q Consensus 426 ~~~~ 429 (430)
|+.+
T Consensus 426 G~~l 429 (488)
T cd00216 426 GKEL 429 (488)
T ss_pred Ccee
Confidence 8754
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.5e-08 Score=93.91 Aligned_cols=240 Identities=10% Similarity=0.105 Sum_probs=168.2
Q ss_pred EEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeec---CCceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
-++|.||.+.|.-+.|+++ .|-|...+|.|.||-+-.|........ ...+.+++|..||..+. ...||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 3578999999999999654 888899999999999887754433222 24466689999999998 88999999888
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-------eeEE----eecCCCCeEEEEec-----
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-------CSQI----IRMHCAPVTSLSLS----- 242 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~----~~~~~~~i~~~~~~----- 242 (430)
+++.+.--....+.....+.++++...++.+-.+|.+.++|.+..- +... +......|..+.|.
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 8876643333333333445666666667788888999999975331 1111 11112235556554
Q ss_pred ---CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEeCCCCce
Q 014104 243 ---ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---------GYASCWDLRTMKS 309 (430)
Q Consensus 243 ---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~ 309 (430)
|+ ..++.+..+|.+.+-.-.+......+. ..-.+....|+++|..|++++.+ +.|.+|..- |+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i 300 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHI 300 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhh
Confidence 24 478889999988887655444333343 23478889999999999988754 246666543 778
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+.+++.....|+++. |-..|-.++.+ .|+.|++=+++.
T Consensus 301 ~gtlkvpg~~It~ls-WEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLS-WEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred eEEEecCCceeeeeE-EcCCceEEEEE-ecceEEEEeecc
Confidence 888888888999998 76666666555 588898887763
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=2.6e-07 Score=95.26 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=149.4
Q ss_pred EEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecC---------------CceeEEEEecCCCEEE-EE-eCCeEEE
Q 014104 117 QCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---------------NAASLVDFDFDESKIV-GL-IGTRICI 176 (430)
Q Consensus 117 ~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~-~~-~~~~i~v 176 (430)
.++++ ++ .+++-+.++.|.++|... +.+..+... .....++++++++.|+ +. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 34552 35 566667788999999765 444333321 1245588888888665 33 3467999
Q ss_pred EEcCCCccc-ccCC--------CC--------ceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecC------
Q 014104 177 WRRNGLRSV-FPSR--------EG--------TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH------ 232 (430)
Q Consensus 177 wd~~~~~~~-~~~~--------~~--------~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 232 (430)
+|..++... +... .+ .....+++.+.+.. +++.+.++.|++||..++... .+.+.
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 998776531 1110 00 01123455553444 566677889999998776542 22111
Q ss_pred ---------CCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeEEEec------------C--------CCCCeEEE
Q 014104 233 ---------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRS------------T--------DCTGIKTL 281 (430)
Q Consensus 233 ---------~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~------------~--------~~~~v~~~ 281 (430)
-.....++++|+ + ++++-+.++.|++||+.++.......+ . .......+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 123457889875 5 556667789999999987653211100 0 01135689
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-------------cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-------------ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+++++|+.+++-..++.|++||..++....... +.......++ ++++|+.+++-+.++.|++||+.
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECC
Confidence 999999988888899999999998765542211 1112466787 99999988998999999999999
Q ss_pred CCce
Q 014104 349 TGEV 352 (430)
Q Consensus 349 ~~~~ 352 (430)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8765
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=6.2e-10 Score=94.18 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=117.6
Q ss_pred EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCC-----ceeEEEecCCCCCeEE
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSD-----QRVATLRSTDCTGIKT 280 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~v~~ 280 (430)
++.+.+-.|-+-|+++|.. +.+. ..+.|.++.|.. ++++..|+.+|.|...|++.+ .+...+. |+..|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 4455666788889888743 2333 567888899984 689999999999999999864 4566666 8888999
Q ss_pred EEEec-CCCEEEEEeCCCeEEEEeCCCCce---eeeeecCCCceEEEE-EeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 281 LCYNP-CSRLVFAGTTAGYASCWDLRTMKS---LWETRISPNVVYSLQ-HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 281 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~-~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
+..-. ++++|++.+.+|+|++||.+.-++ +.++++|-..-.-+- ...+....+++++.|...+||.+++|.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 87765 778999999999999999997666 888888863322211 2567778899999999999999999999998
Q ss_pred EEecc
Q 014104 356 CVMDI 360 (430)
Q Consensus 356 ~~~~~ 360 (430)
++...
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 87643
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.4e-07 Score=88.42 Aligned_cols=322 Identities=14% Similarity=0.111 Sum_probs=204.5
Q ss_pred eEEEEeccccceeEEEec-----------C--C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec---CC-C
Q 014104 104 DIDQWKAHSVGVDQCRMK-----------R--G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF---DE-S 164 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-----------~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~---~~-~ 164 (430)
.++++.-|+..|+.+.|. . . .||++...|.|.+||...+..+..+..+ ..+.-++|-+ +. .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 566788899999999871 1 1 6788888999999999988888777765 4455577765 33 2
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCc-eeeeeEEEEcCCc-eEEEecCCeEEEEECC-------CCeeeEEeecCCC
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMY-------SRKCSQIIRMHCA 234 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-------~~~~~~~~~~~~~ 234 (430)
.|+ ......+.+|+..+|+..+...-++ +...+.+.++++. +..-+..|.+.+-+.- .++..+.-..|.+
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 344 7778999999999999776654443 3333555555555 6666666777666542 1233333322221
Q ss_pred ----------------C---------eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-
Q 014104 235 ----------------P---------VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS- 287 (430)
Q Consensus 235 ----------------~---------i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 287 (430)
. ...++|+|. +.++.......+.++|++-..++....- ..+.+.-+.+-|++
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCcceeEeccCCC
Confidence 0 012455664 3344445677899999998888877765 44455566666655
Q ss_pred -CEEEEEeCCCeEEEEeCCC----------------Cceee-----------------------------------eee-
Q 014104 288 -RLVFAGTTAGYASCWDLRT----------------MKSLW-----------------------------------ETR- 314 (430)
Q Consensus 288 -~~l~~~~~dg~i~i~d~~~----------------~~~~~-----------------------------------~~~- 314 (430)
..|++...||.+.+|-.+. ++... ++.
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 5788999999999986543 10000 000
Q ss_pred ---------------------------------------cCCCceEEEE----------EeeCCC-------CeEEEEcC
Q 014104 315 ---------------------------------------ISPNVVYSLQ----------HLQNDT-------STLVVGGI 338 (430)
Q Consensus 315 ---------------------------------------~~~~~v~~l~----------~~s~~~-------~~l~s~~~ 338 (430)
+|.....+.. ...|.+ .+++.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 0111111111 011222 26788999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCccee---------eeccCC------c-eEEEeecccccCC--cccccCCCCCCCCee
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASS---------SSNKVS------G-VIERNEGRRLSAG--CCIDRIPKTIRPPIT 400 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~---------~~~s~d------~-~v~~~~~~~~~~~--~~~~~~~~~h~~~v~ 400 (430)
.|+|.++|+.++...+.+..|+..+.. ++++-. | ......+-++.++ ..++.+++.-+.+|+
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 999999999999888888888776522 222211 1 1112223344443 445666677778999
Q ss_pred EEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 401 CLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 401 ~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+.. .++|++..=.|.-+-+||+++-
T Consensus 526 ~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred eeeecccCceEEEEecccchHHHhhccc
Confidence 9888 4999999999999999998653
No 282
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.9e-09 Score=90.98 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=167.5
Q ss_pred cccceeEEEec-CCeEEEEeCCCeEEEEecCC---CeeEEeeecC-CceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCc
Q 014104 111 HSVGVDQCRMK-RGLILTGVGDKVMRLWSLEG---YKCVEEYSLP-NAASLVDFDFDESKIV-GLI-GTRICIWRRNGLR 183 (430)
Q Consensus 111 h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~ 183 (430)
|.+.|+.+... -+++++++.||.++.|.-.. -+.++.+..| ..+..++.+.++..+. .+. |..++++|+++-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 78888887764 45999999999999997543 1333444444 3344577788887777 355 8999999998765
Q ss_pred ccccCCCCceeeeeEEEEcCCc----eE-EEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 184 SVFPSREGTFMKGLCMRYFDPE----AV-VGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
.+-...........+|.....+ ++ +.-.+|.+.++|-.... ....-+-|..+|..+.+++. +.+++....|.
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 3311111111122344443332 33 33457899999976443 23334568999999999974 78888888999
Q ss_pred EEEEeCCC------CceeEEEec--------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec------
Q 014104 256 IAISGLSS------DQRVATLRS--------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI------ 315 (430)
Q Consensus 256 i~vwd~~~------~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------ 315 (430)
|.-|.... .+....++. .......++.|+|+|..+.+-+.|..|++++.++++.++++..
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ 247 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence 99999762 111111110 0234678999999999999999999999999998866544321
Q ss_pred --------------------------CCCc-eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 316 --------------------------SPNV-VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 316 --------------------------~~~~-v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|... -..+. |...|++|+-|+-=| |++.++.++++++.+-..
T Consensus 248 ~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~-fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 248 YQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV-FDESGNFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred hccccccccceeehhhhhhHHhhHhhhcCcccceeE-EcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 2221 22333 888899999887665 999999999988877543
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=3.4e-09 Score=91.61 Aligned_cols=153 Identities=9% Similarity=0.073 Sum_probs=104.8
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEeCCCCce----eEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCce
Q 014104 238 SLSLSED-QLIISGSSLGSIAISGLSSDQR----VATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKS 309 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~ 309 (430)
.+..+++ .+++.+..+....+++...... +.... ....-+++.|..+......+. ....+.+|....+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3444444 6777777777766777654332 22222 222344555554544444443 344455555554433
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
..+-+|-..++.++ ++||+++++++..|..|++-.......+..+
T Consensus 145 -~~~lGhvSml~dVa-vS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------------- 189 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVA-VSPDDQFIITADRDEKIRVSRYPATFVIESF--------------------------------- 189 (390)
T ss_pred -chhhhhhhhhheee-ecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------------
Confidence 34568989999999 9999999999999999999877644444443
Q ss_pred cCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 390 RIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.+|..-|..++. ++..|++||.|++|++||+.+|+.+
T Consensus 190 --clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 190 --CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred --ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 4578889999999 6777899999999999999999764
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=1.6e-07 Score=78.25 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=131.9
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCc------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee
Q 014104 157 VDFDFDESKIVGLIGTRICIWRRNGLR------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 157 ~~~~~~~~~l~~~~~~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
++.+.+|+.|+.-.|..|.+-..+..- ..........-.-++|++++..++.+...|+|+++|+.. ..+..+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 345567777777777777666554322 112222233334577888888899999999999999964 4333443
Q ss_pred cC-------CCCeEEEEecCC-------CEEEEEeCCCeEEEEeCCCC-----ceeE--EEecCCCCCeEEEEEecCCCE
Q 014104 231 MH-------CAPVTSLSLSED-------QLIISGSSLGSIAISGLSSD-----QRVA--TLRSTDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 231 ~~-------~~~i~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~ 289 (430)
.. ..+|..|.|.+. ..|++-..+|.++-|-+..+ +..+ .+..+....|.++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 21 246677777531 24666677888777765322 2222 333445668999999999998
Q ss_pred EEEEeCC----C-------eEEEEeCCCCceee-----------------------ee------ecCCCceEEEEEeeCC
Q 014104 290 VFAGTTA----G-------YASCWDLRTMKSLW-----------------------ET------RISPNVVYSLQHLQND 329 (430)
Q Consensus 290 l~~~~~d----g-------~i~i~d~~~~~~~~-----------------------~~------~~~~~~v~~l~~~s~~ 329 (430)
|++|+.. + -+..|.+-++.+.. .+ ....+.|..|. .|||
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS-lSPd 240 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS-LSPD 240 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE-ECCC
Confidence 8877532 1 26667654331110 00 01246788998 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
|..||+...+|.|.+|++.+-++.+.+..+.+
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 99999999999999999998888887775544
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=2.9e-07 Score=81.62 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=142.3
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC-------Cce------eEEE-Eec-CCCEEEEEeCCeEEEEEcCCCcccccCCCCc
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP-------NAA------SLVD-FDF-DESKIVGLIGTRICIWRRNGLRSVFPSREGT 192 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~-------~~~------~~~~-~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~ 192 (430)
=+..|.|.++|.++... ..+... ... ..+. |++ +|++++.-+-|+..+.+...+-.+...+.+.
T Consensus 283 Fq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~ 361 (668)
T COG4946 283 FQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGG 361 (668)
T ss_pred EecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCc
Confidence 34557799999877433 222211 001 1111 333 6778887777888888877766555555444
Q ss_pred eeeeeEEEEcCCceEEEecCC-eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEE
Q 014104 193 FMKGLCMRYFDPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 270 (430)
+....+...++.++.|..|| .+-++|.++++. +.+...-+.|.+++.+++ ..++.+.....+.+.|+.+++....-
T Consensus 362 -VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 362 -VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred -eEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 34455555566699999999 899999987764 455556789999999976 78888888899999999998864433
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAG----YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+ ...+-|+.++|+|+++++|-+-.+| .|++||+.+++....-. ..+.=.+-+ |.|++++|.--+
T Consensus 440 k-S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPa-FD~d~ryLYfLs 507 (668)
T COG4946 440 K-SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPA-FDPDGRYLYFLS 507 (668)
T ss_pred c-cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcc-cCCCCcEEEEEe
Confidence 3 3566899999999999999876665 59999999877654322 223334555 889999876544
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=6.4e-07 Score=79.54 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=136.2
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCccc-cc-------CC-CCceeeee----EEEEc-CCceEEEecCCeEEEEECCC
Q 014104 157 VDFDFDESKIVGLIGTRICIWRRNGLRSV-FP-------SR-EGTFMKGL----CMRYF-DPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 157 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~-------~~-~~~~~~~~----~~~~~-~~~l~~~~~dg~i~vwd~~~ 222 (430)
-..+.||+.++-+..|.|.+||.++.... +. .. ........ .++.. +..++..+ .|...+.+...
T Consensus 272 R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 272 RNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 44567899999999999999999876521 10 00 00110000 12222 33344444 46777777655
Q ss_pred CeeeEEeecCCCCeEEEEec-CCCEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+-.++. +|.+.|.-..+. .++-++.|..|| .+-++|.++++..+... .-+.|.++..+|+|++++++.....+-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEE
Confidence 544432 466778777776 335788888898 89999999877654444 566899999999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC----eEEEEEcCCCceEE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG----VLRVLDQNTGEVLS 354 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg----~i~vwd~~~~~~~~ 354 (430)
++|+.+++....-+...+-|+... |+|+++++|-+--+| .|+++|+..++...
T Consensus 427 vididngnv~~idkS~~~lItdf~-~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFD-WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeeEecccccceeEEEE-EcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 999999987655555568899999 999999999877665 58999999766543
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=91.58 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=112.6
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----ceeee
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-----KSLWE 312 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~ 312 (430)
+|+-+ .+-++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.. .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 55522 2335666778888999988754 3343 4557999999988999999999999999999864 23333
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce---EEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV---LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
-.|.+.|+++.....++++|++.+.+|+|++||.+.-++ +.++.+|.+.
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~--------------------------- 346 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL--------------------------- 346 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc---------------------------
Confidence 348889999985555889999999999999999987666 8888877651
Q ss_pred cCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 390 RIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
|..--..|.-....++++|+|...|||.++.|.
T Consensus 347 -----~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 347 -----SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred -----ccccccccccccceEEEccCeeEEEEEecccCc
Confidence 111111122245678899999999999998764
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=4.5e-07 Score=84.85 Aligned_cols=179 Identities=10% Similarity=-0.062 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc--e-EEEecC--CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C
Q 014104 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE--A-VVGCED--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q 245 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~ 245 (430)
..|.+.|.++...............-.|++++.. + ++...+ ..|.+.++.+++.... ....+.....+|+|+ +
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence 3677778777653322222222334578888765 2 244444 3588889987765433 334455567899987 5
Q ss_pred EEEEEeC-----CCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCe--EEEEeCCC-Cceeeee
Q 014104 246 LIISGSS-----LGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGY--ASCWDLRT-MKSLWET 313 (430)
Q Consensus 246 ~l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~ 313 (430)
.|+..+. +..+..||+.++ +....... ........+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 6665442 234455777653 33333322 223446789999999877654 4564 44445432 2333344
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceE
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVL 353 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~ 353 (430)
..+...+.... |+|||+.|+..+.+ ..|.+||+.+++..
T Consensus 323 t~~~~~~~~p~-wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 323 TKKYRNSSCPA-WSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ccCCCCcccee-ECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 44445566777 99999988876543 47999999887654
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=1.3e-08 Score=83.07 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=88.8
Q ss_pred CeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCE
Q 014104 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRL 289 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 289 (430)
+..+.|+++..+.+..-+.....|.+++-+|. +++++|+.||.+-+||.++......+...|..++..+.|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34566666543322221222334888888875 688999999999999999876655555558889999999984 578
Q ss_pred EEEEeCCCeEEEEeCCCCceee------------------e---eec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 290 VFAGTTAGYASCWDLRTMKSLW------------------E---TRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~------------------~---~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
|+++++||.+-.||..+ +.+. . +.+ -.....++..|.--|..|++|+.-+.|++++
T Consensus 239 Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999999873 1111 0 000 0112223333445677888888778787764
No 290
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=1.8e-08 Score=85.49 Aligned_cols=144 Identities=14% Similarity=0.250 Sum_probs=99.3
Q ss_pred eEEEecCCeEEEEECCCC-ee--eEEeecC-----CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeE----EEe
Q 014104 206 AVVGCEDGTARVFDMYSR-KC--SQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVA----TLR 271 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~-~~--~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~----~~~ 271 (430)
......|=.|.+|+++-- +. +..++.+ +.-|++..|+|. +.++-.+..|+|++-|++.....- .+.
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 333445667889987632 22 2222222 346889999985 788888999999999998533211 111
Q ss_pred cC-----------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeC-CCCceeeeeecCCC------------ce---EEEE
Q 014104 272 ST-----------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDL-RTMKSLWETRISPN------------VV---YSLQ 324 (430)
Q Consensus 272 ~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~------------~v---~~l~ 324 (430)
.. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 10 1126889999999999998755 46999999 45677777666631 12 3344
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|+-++.+++||+..+.++++++..|.
T Consensus 337 -~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 -WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -EcCCcceEecccccceEEEecCCCCc
Confidence 78888899999999999999977654
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=3.1e-07 Score=75.52 Aligned_cols=225 Identities=11% Similarity=-0.018 Sum_probs=141.9
Q ss_pred CCeEEEEeCCCeEEEEecCCCeeEEe-eecC-CceeEEE-Eec-CCCEEEEEeCCeEEEEEcCCCcccccCCCCc-eeee
Q 014104 122 RGLILTGVGDKVMRLWSLEGYKCVEE-YSLP-NAASLVD-FDF-DESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKG 196 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~-~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~ 196 (430)
.++||.|+.-|...+|...+.+.... ...+ ..+.... ..- .-..++++.|.++++.+++.+...+..+... ....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45999999999999999886543322 2222 2222211 111 1223448889999999988776554444442 2233
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCC-e-eeEEe-ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeE----
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSR-K-CSQII-RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVA---- 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-~~~~~-~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~---- 268 (430)
..++.++..+++.+....|..|.+... + .+.+. ....+.=.+..|+. +..+|+++.||++.|||++......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 455556666888888889999987543 2 22312 22334446778884 5799999999999999999754432
Q ss_pred EEecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEeCCCCceeeeeec-------CC-CceEEEEEeeCCCCeEEEEcC
Q 014104 269 TLRSTDCTGIKTLCYNPCSR--LVFAGTTAGYASCWDLRTMKSLWETRI-------SP-NVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~-~~v~~l~~~s~~~~~l~s~~~ 338 (430)
.-+.+|.+.+..+.|++.|. +|+..-.-+.+.+.|+++++....+.. |. ..++... |+.++..+.+.++
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~-f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN-FNNENESNDVKNE 322 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc-ccCCCcccccccc
Confidence 22345888999999998763 555555567899999999865544332 22 2366665 6666665555544
Q ss_pred CCeEEEEEcC
Q 014104 339 DGVLRVLDQN 348 (430)
Q Consensus 339 dg~i~vwd~~ 348 (430)
+ .+.=|++.
T Consensus 323 ~-~~ae~ni~ 331 (344)
T KOG4532|consen 323 L-QGAEYNIL 331 (344)
T ss_pred h-hhheeecc
Confidence 3 34445544
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.94 E-value=2e-06 Score=77.08 Aligned_cols=254 Identities=10% Similarity=0.112 Sum_probs=155.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCC---------------eEEEEecCCCeeEEeeecCCce----eEEEEecCCCEEEEEeCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDK---------------VMRLWSLEGYKCVEEYSLPNAA----SLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 172 (430)
.|.-+.| |++ ||.|=+..+ .+.+||+.+|..+..+...... ..+.|+.+..+++--...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 4566667 444 777754433 4999999999999998875333 468899999998855778
Q ss_pred eEEEEEcCCCccc--ccCCCCceeeeeEEEEcCC--ceEE-----EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 173 RICIWRRNGLRSV--FPSREGTFMKGLCMRYFDP--EAVV-----GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 173 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
.+.++++...-.. +..........+.+++-++ .|+. .+..+.+++|.+..+..+.+-.-....=..+.|++
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~ 232 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV 232 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec
Confidence 8999997222111 1111111122234444322 2332 45678899999876665544332223334566664
Q ss_pred -CCEEEEE----e-------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCce
Q 014104 244 -DQLIISG----S-------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKS 309 (430)
Q Consensus 244 -~~~l~~~----~-------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 309 (430)
+++++.- . ....+.+++++.. .+..... ..++|...+|.|.++.+++ |..+..+.++|++.. .
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKD-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeeccc-ccceecc-ccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence 3332211 0 1346788888733 3333322 5679999999999887664 457888999999955 4
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEE-EEEeccCcceeeeccCCceEE
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLS-RCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~s~d~~v~ 375 (430)
...+ ....-..+. |+|.+++++.++-| |.+-+||......+. .+.+. .....-+++|+...
T Consensus 310 ~~~~--Pe~~rNT~~-fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~ 374 (561)
T COG5354 310 RFYF--PEQKRNTIF-FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY 374 (561)
T ss_pred EEec--CCccccccc-ccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEE
Confidence 3333 233445555 99999999998755 789999988554433 44332 22334456666553
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2e-09 Score=96.76 Aligned_cols=153 Identities=14% Similarity=0.248 Sum_probs=115.3
Q ss_pred CCceEEEecCCeEEEEECCC-------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-C
Q 014104 203 DPEAVVGCEDGTARVFDMYS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS-T 273 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~ 273 (430)
.+.+++++.|.+|++|.++. ..|..++..|+.+|.++.|-.+ .++++ -||.|.+||.--++.+..+.. .
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCc
Confidence 33499999999999998863 3477888999999999999865 56654 489999999887777654432 1
Q ss_pred CCCCeEEEEEec--CCCEEEEE-eCCCeEEEEeCCCCceeeeeecC-----CCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 274 DCTGIKTLCYNP--CSRLVFAG-TTAGYASCWDLRTMKSLWETRIS-----PNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 274 ~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..+.+..+..-| +...+++| +...+|+++|.+.++-..+++.. .+.+.+++ ..+.|++++++-.+|.|.+.
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia-Va~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA-VADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE-eccCcchhhHHhcCCcEEEE
Confidence 222333333333 34455555 67889999999998766665533 35678888 88999999999999999999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
|.++|+.+..+..
T Consensus 904 DaR~G~vINswrp 916 (1034)
T KOG4190|consen 904 DARNGKVINSWRP 916 (1034)
T ss_pred ecCCCceeccCCc
Confidence 9999999887764
No 294
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.93 E-value=8.6e-06 Score=78.07 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=119.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc--eeE----------EEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASL----------VDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
+.++.++.++.++.|.-.|..+|+.+..+..... ... +++ .++..++++.++.+.-+|.++++.+..
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3477888888889999999999999887764321 110 111 133444488899999999999987655
Q ss_pred CCCCcee---ee-eEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCC------------------------
Q 014104 188 SREGTFM---KG-LCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC------------------------ 233 (430)
Q Consensus 188 ~~~~~~~---~~-~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~------------------------ 233 (430)
....... .. ..-...+..++++.. +|.|..+|.++|+.+..+..-.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 4322110 00 011112334555543 6899999999999876653211
Q ss_pred -------CCe-EEEEecCC-CEEEEEeCC-----C-----------eEEEEeCCCCceeEEEecCCCC--------CeEE
Q 014104 234 -------APV-TSLSLSED-QLIISGSSL-----G-----------SIAISGLSSDQRVATLRSTDCT--------GIKT 280 (430)
Q Consensus 234 -------~~i-~~~~~~~~-~~l~~~~~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~--------~v~~ 280 (430)
+.+ ..+.+.+. ++++.+..+ + +|.-.|++||+....++..+.. ...-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 011 13355544 555555421 2 7788899999998887652221 1222
Q ss_pred EEEecCCC---EEEEEeCCCeEEEEeCCCCcee
Q 014104 281 LCYNPCSR---LVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 281 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
+.+..+|+ .++.+..+|.+++.|.++++++
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 33334665 7789999999999999999886
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=1.1e-05 Score=69.89 Aligned_cols=195 Identities=16% Similarity=0.157 Sum_probs=119.9
Q ss_pred EEEecCCCEE-EEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec---
Q 014104 157 VDFDFDESKI-VGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--- 231 (430)
Q Consensus 157 ~~~~~~~~~l-~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--- 231 (430)
..|.+....| ++. ..+.|..|+..++......... ...+.+...+..++++...+ +.++|..+++.......
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence 4556533333 333 4677788887777643322222 22233332344466666654 45559888865444432
Q ss_pred --CCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeE
Q 014104 232 --HCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYA 299 (430)
Q Consensus 232 --~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 299 (430)
.....+.+++.++ ++.++.... |.|..++.. ++...... .-.....++|+|+++.|+ +-+..+.|
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccccccee
Confidence 2346788999976 544444332 567888877 55444443 234678999999999776 55677889
Q ss_pred EEEeCCCCce-------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 300 SCWDLRTMKS-------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 300 ~i~d~~~~~~-------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
..|++..... ...+....+..-.++ +..+|++.++.-..+.|.++|.+ |+.+..+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~-vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLA-VDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE-EBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcce-EcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 9999863221 122222223467888 99999988887788999999987 9998888764
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.4e-08 Score=86.56 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=99.9
Q ss_pred eEEEecCCeEEEEECCCCee----eEEeecCCCCeEEEEec-CCCEEEE---EeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLS-EDQLIIS---GSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~~-~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
++++..+....+++...... +..... ...-+++.+. .+..+.. +++...+.+|....+.+.- +-+ |-..
T Consensus 77 lAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lG-hvSm 153 (390)
T KOG3914|consen 77 VAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILG-HVSM 153 (390)
T ss_pred EEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhh-hhhh
Confidence 66666666666666544332 222221 1122333333 2222333 3445566666665544433 334 8889
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++.++++||+++++++..|..|++-....-..+..+ -||..-|..++ .-+ +..|+++|.|++|++||+.+|+.+.++
T Consensus 154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-LTD-NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-ecc-CceeeecCCCCcEEEEecccCCccccc
Confidence 999999999999999999999999887765555554 46999999998 644 566999999999999999999998777
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 232 dl 233 (390)
T KOG3914|consen 232 DL 233 (390)
T ss_pred ch
Confidence 64
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.3e-07 Score=90.26 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=132.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
++.|+....+..+|+++.+..+......+.|.-|.. ++..+.+|...|+|.+-|.++.+.++++.. |.+.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeec-cccceeeeec--
Confidence 777888788889999998888777655556776666 557899999999999999999999999998 8888887666
Q ss_pred CCCEEEEEeC---------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCC-Cce-E
Q 014104 286 CSRLVFAGTT---------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNT-GEV-L 353 (430)
Q Consensus 286 ~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~-~~~-~ 353 (430)
.|+.|++++. |..|++||+++.+.+..+.-+.++ .-+. |.|. ...+++++..|...+-|..+ +.+ .
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr-f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR-FHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh-hcccccceEEEEecccceeeccccccCCCcc
Confidence 7899998865 456899999998888776665444 2233 5553 34778888899999988432 111 2
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
..+..++. .+.+.++.+ +++.|+.|..+|.|.+|.
T Consensus 304 ~~~~v~p~----------------------------------~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPN----------------------------------GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccC----------------------------------CCcceeEEecCCCceEEEecccCcEeeec
Confidence 22222222 124666666 588999999999999997
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2e-06 Score=77.95 Aligned_cols=231 Identities=10% Similarity=0.122 Sum_probs=138.1
Q ss_pred ceeEEEecC-C-eEEEEeC-----------CCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEEEEeCCeEEE
Q 014104 114 GVDQCRMKR-G-LILTGVG-----------DKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 114 ~v~~~~~~~-~-~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
.|.-+.|++ . ||+|=+. ...+.|||+.+|...+.|..... -....||.|+++++.-....|.|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 356677744 4 9998654 25789999999999998886322 34589999999999766799999
Q ss_pred EEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEec-----CCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEE
Q 014104 177 WRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIIS 249 (430)
Q Consensus 177 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~ 249 (430)
|+...-..+ .....-..+..+.|++.+..|+--.. -..+.+..+.+++.+++-.-|+-.-..+.|-. +++|..
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence 997763221 11111122233455555444332211 12455555656655555443332222333432 344432
Q ss_pred E----------eCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCC-C---ceee
Q 014104 250 G----------SSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRT-M---KSLW 311 (430)
Q Consensus 250 ~----------~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~---~~~~ 311 (430)
- +.-..+.|+.++... ++..+. ....|...+|.|.|+.+++-+. ..++.+|.+.+ . +++.
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCCCceeee--cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 1 111235556655433 233333 4558999999999998775432 35688898873 2 2333
Q ss_pred eeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCC
Q 014104 312 ETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNT 349 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~ 349 (430)
.+.. ...+.+. |+|.|++++.+. ..|.+.++|+..
T Consensus 489 ~~dk--~~~N~vf-wsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 ELDK--KFANTVF-WSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhcc--cccceEE-EcCCCcEEEEEEecccccceEEEecch
Confidence 4433 3445665 999999988765 568899999874
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=7.7e-08 Score=91.70 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=134.1
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
+..++ |+....+..+|+.+.+......-+.. .+.-+..++..+.+|...|+|.+-|..+.+.++++..|++.|.++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC-ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 34444 77788888899988775433322221 14566777788999999999999999999999999999999999888
Q ss_pred cCCCEEEEEeC---------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-Cce-
Q 014104 242 SEDQLIISGSS---------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-MKS- 309 (430)
Q Consensus 242 ~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~- 309 (430)
.++.+++++. |.-|+|||++..+.+..+.- .....-+.|+|.- ..+++.+..|...+-|..+ ..+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 4567777764 56789999998887766653 2234567788753 4678888899999998433 222
Q ss_pred --eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 310 --LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 310 --~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+..+......+..+. ++++++.++.|..+|.|.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fD-iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFD-ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEE-ecCCCceEEEecccCcEeeec
Confidence 222233335588898 999999999999999999997
No 300
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.83 E-value=1.9e-09 Score=66.79 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=40.4
Q ss_pred CccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
.+..||+|++.+||++|++.++.++++|||.|+.++.+..+|...++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 46789999999999999999999999999999999999999988764
No 301
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.82 E-value=4.4e-06 Score=79.83 Aligned_cols=229 Identities=16% Similarity=0.172 Sum_probs=145.9
Q ss_pred ecC-CeEEEEeCCCeEEEEecCCCeeEEeeecCCce------e-EEEEecCCCEEEEE---------eCCeEEEEEcCCC
Q 014104 120 MKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA------S-LVDFDFDESKIVGL---------IGTRICIWRRNGL 182 (430)
Q Consensus 120 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~-~~~~~~~~~~l~~~---------~~~~i~vwd~~~~ 182 (430)
+.+ +.++.++.++.|..+|.++|+.+..+...... . ...+. ++..++++ .++.+.-+|.+++
T Consensus 107 ~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 107 YWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred EccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 335 68888899999999999999999887754321 1 11111 23333443 2578888999988
Q ss_pred cccccCCCCce----------------------eeeeEEEEcCCceEEEecCC------------------eEEEEECCC
Q 014104 183 RSVFPSREGTF----------------------MKGLCMRYFDPEAVVGCEDG------------------TARVFDMYS 222 (430)
Q Consensus 183 ~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~ 222 (430)
+..+....... -....+...+..++.++.++ .|.-+|..+
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 86654322100 00111122234477777665 799999999
Q ss_pred CeeeEEeecCCCCe-----------EEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 223 RKCSQIIRMHCAPV-----------TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 223 ~~~~~~~~~~~~~i-----------~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
|+....++.-.... ..+.-..+ ..++.++.+|.+...|.++|+.+...... ...+..+| .
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~ 339 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--G 339 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--c
Confidence 99988765211111 11110112 36788889999999999999998877531 11233444 3
Q ss_pred EEEEE------------------eCCCeEEEEeCCCCceeeeeecCC--------Cce--EEEEEeeCCCCeEEEEcCCC
Q 014104 289 LVFAG------------------TTAGYASCWDLRTMKSLWETRISP--------NVV--YSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 289 ~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~--------~~v--~~l~~~s~~~~~l~s~~~dg 340 (430)
.++.+ ..+|.+.-.|+.+++.+.+..... ... ..+. ..+..|++++.||
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~---~~g~~v~~g~~dG 416 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA---TAGNLVFAGAADG 416 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE---ecCCeEEEECCCC
Confidence 33332 246789999999999888765431 111 1222 2467889999999
Q ss_pred eEEEEEcCCCceEEEEEe
Q 014104 341 VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~ 358 (430)
.|+.+|..+|+.+.+.+.
T Consensus 417 ~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 417 YFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEEEEECCCCceeeEEEC
Confidence 999999999999998875
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=2.7e-08 Score=92.60 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEeccccceeEEEecC---CeEEEEeCCCeEEEEecCCCe-eEEeeec-CCceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 106 DQWKAHSVGVDQCRMKR---GLILTGVGDKVMRLWSLEGYK-CVEEYSL-PNAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
..+.||..+|+.+-|.. ..+++++.|-.+..||+.+.. .+..+.. +.+.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a-------------------------- 161 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA-------------------------- 161 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC--------------------------
Confidence 46789999999999943 399999999999999987632 2222211 1111
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEE
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~ 257 (430)
..+.+.+-.+.+.+.+....|.+||.+.| .++..+++|...|+.++|+. ...+.+.+.|++|+
T Consensus 162 --------------sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 162 --------------SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --------------ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 12445555666666777778999999876 57788999999999999984 26788999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE--eCCCeEEEEeCC---------C-CceeeeeecCCCceEEEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG--TTAGYASCWDLR---------T-MKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~---------~-~~~~~~~~~~~~~v~~l~~ 325 (430)
.||................+|..-++.|-|.-.++- -.+..+-+++-+ + .+++.++.+|.+.|....
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl- 306 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL- 306 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh-
Confidence 999875433222221134466666777755422211 111234444332 2 467889999998876655
Q ss_pred eeC--------C--CCeEEEEcCCCeEEEEEcC
Q 014104 326 LQN--------D--TSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 326 ~s~--------~--~~~l~s~~~dg~i~vwd~~ 348 (430)
|-. + .-.|+|=+.|..+++|-+.
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 311 1 1279999999999999876
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1.4e-05 Score=74.52 Aligned_cols=216 Identities=8% Similarity=-0.061 Sum_probs=127.1
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCE-EE-EEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
.|.+=|.+... .+.+..........|+|||+. ++ .+. ...|.++|+.+++...............+++++..++
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 45554554433 222332334556899999985 54 333 3569999998887433222222233456777777744
Q ss_pred -EEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 -VGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 -~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
+.+. +..|.++|+.+++.. .+..+.+......|+|+ +.++..+ ..+ .|.+.|+.+++..+.... ... .
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~~--~ 323 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GKN--N 323 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CCc--C
Confidence 3333 357888898777643 34434433445679986 5555444 333 688889988776443332 111 2
Q ss_pred EEEecCCCEEEEEeCC---------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcC
Q 014104 281 LCYNPCSRLVFAGTTA---------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQN 348 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~ 348 (430)
..|+|+|+.++..... ..|.+.|+.+++.. .+... ....... |+|||+.|+..+.+ ..+.+.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~-~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR-FSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE-ECCCCCEEEEEEccCCcEEEEEEecC
Confidence 4899999988865543 36888898877543 33322 2223455 99999987665532 246666765
Q ss_pred CCceEEEEEe
Q 014104 349 TGEVLSRCVM 358 (430)
Q Consensus 349 ~~~~~~~~~~ 358 (430)
|.....+..
T Consensus 401 -g~~~~~l~~ 409 (419)
T PRK04043 401 -YNKSFLFPL 409 (419)
T ss_pred -CCeeEEeec
Confidence 444444543
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=4.5e-09 Score=99.56 Aligned_cols=219 Identities=11% Similarity=0.123 Sum_probs=145.8
Q ss_pred cCCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE--EEeC-Ce
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV--GLIG-TR 173 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~--~~~~-~~ 173 (430)
......++|+.|+..-+|++|+.+ .|+.|+..|.|+++++.+|.....+.+|+. +..+.-+.+|..++ ++.. --
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 333456788999999999999754 999999999999999999999988888744 45577778898877 2222 24
Q ss_pred EEEEEcCCCc-ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee----cCCCCeEEEEecCCCEEE
Q 014104 174 ICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSEDQLII 248 (430)
Q Consensus 174 i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~ 248 (430)
..+|++...- ........+ .+-++.....-+.|+......+||++|+..+.++- +....-++..|+|.+.++
T Consensus 1169 saLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDEDK---AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHHhccccccCccccccccc---eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 6789986522 111111111 12222222224455555678999999998776632 122233678899875444
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
. .|| .+||.+..+.++.|.. .. .-..=.|+|+|..++..+. |||+++.+.++....-. -..+. |+.
T Consensus 1246 l--ndG--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~Vt-FNs 1311 (1516)
T KOG1832|consen 1246 L--NDG--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVT-FNS 1311 (1516)
T ss_pred e--eCc--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEE-ecc
Confidence 3 344 5899999888888764 33 2223369999999988754 99999988876654322 23444 666
Q ss_pred CCCeEEE
Q 014104 329 DTSTLVV 335 (430)
Q Consensus 329 ~~~~l~s 335 (430)
.|..++.
T Consensus 1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred Cccchhh
Confidence 6765543
No 305
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.73 E-value=1.4e-08 Score=60.49 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=38.4
Q ss_pred CcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHH
Q 014104 27 LNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66 (430)
Q Consensus 27 Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~ 66 (430)
||+|++.+||.+|++.|+.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999964
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=6.2e-08 Score=56.96 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=36.6
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
++++.++.+|.+.|++++ ++|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~-~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIA-WSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEE-EETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEE-EecccccceeeCCCCEEEEEC
Confidence 367889999999999999 999999999999999999997
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=7.1e-07 Score=75.03 Aligned_cols=236 Identities=11% Similarity=0.199 Sum_probs=145.3
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCCCe-----eEEeeecC-------------CceeEEEEecCC---CEEE
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLP-------------NAASLVDFDFDE---SKIV 167 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~---~~l~ 167 (430)
..+.|+++.|. -| ||++|...|.|.++.-+... ....|+.| +.+..+.|-.++ ..|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999994 44 99999999999999654321 12223332 223345554433 2456
Q ss_pred EEeCCeEEEEEcCCCcc-------------------------c-ccCCCC----------------ceeeeeEEEEcCCc
Q 014104 168 GLIGTRICIWRRNGLRS-------------------------V-FPSREG----------------TFMKGLCMRYFDPE 205 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~-------------------------~-~~~~~~----------------~~~~~~~~~~~~~~ 205 (430)
.+.|.+|++|.+-.... + ...... |.-.+.+++..+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 99999999998753210 0 000000 11111222222222
Q ss_pred -eEEEecCCeEEEEECCCCe---eeEEeecCC-----CCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCcee----EE-
Q 014104 206 -AVVGCEDGTARVFDMYSRK---CSQIIRMHC-----APVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV----AT- 269 (430)
Q Consensus 206 -l~~~~~dg~i~vwd~~~~~---~~~~~~~~~-----~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~----~~- 269 (430)
.+..+.|=.|.+|+++-.. -+..++.|. .-|++..|+|. +.+.-.+..|.|++-|++..... ..
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 4445566788999875322 122334443 46788999975 67777788999999999843221 00
Q ss_pred ---Eec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCC------------Cce---EEE
Q 014104 270 ---LRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISP------------NVV---YSL 323 (430)
Q Consensus 270 ---~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~------------~~v---~~l 323 (430)
+.+ .-...|..+.|+++|+++++-+. -+|++||++. ..++.++..|. +.| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 110 01236889999999999988765 4699999986 45666665442 222 344
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
. ||-|.+.+++|+..+..-++-+.
T Consensus 344 s-fSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 344 S-FSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred E-ecCCcccccccccccceeeeccc
Confidence 4 78888999999988888888644
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-05 Score=72.84 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=142.6
Q ss_pred EEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEe------------CCeEEEEEcCCC
Q 014104 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI------------GTRICIWRRNGL 182 (430)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~i~vwd~~~~ 182 (430)
-+.| |.| ||+|--.- -|.+|--++...++.|.+ ..+..+.|||+.++|++-+ ...+.|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEecc-ceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 3455 456 77776654 478897777666666665 4788899999999998321 257999999998
Q ss_pred ccc--ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-----
Q 014104 183 RSV--FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS----- 252 (430)
Q Consensus 183 ~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~----- 252 (430)
... +.. .....-..+.|++++.+++.-.. .+|.||+..+-.++..-.-.-..|....|+|. ++||--+.
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNI 371 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCC
Confidence 743 333 22223456778888888776655 47999997654333222223456888899987 55554432
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT----------TAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
-..+-+-.+-+++.+++-+- +.-.=..+.|..+|.+|+.-- .-..+.|+.++....--..-.-...|..
T Consensus 372 parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~ 450 (698)
T KOG2314|consen 372 PARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIA 450 (698)
T ss_pred cceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheee
Confidence 13566667777777666554 332334466777888876431 1123566666643322222223467888
Q ss_pred EEEeeCCCCeEEEEcC---CCeEEEEEcC
Q 014104 323 LQHLQNDTSTLVVGGI---DGVLRVLDQN 348 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~---dg~i~vwd~~ 348 (430)
.+ |.|.|..+++-+. ..++.+|.++
T Consensus 451 Fa-WEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 451 FA-WEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred ee-eccCCCeEEEEEccccccceeEEEee
Confidence 88 9999987766553 3567788776
No 309
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=9.6e-05 Score=64.02 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCcc----cccCCCCceeeeeEEEEcCCceEEEecC---CeEEEEECCC--Ceee--EEeecCCCCeEEE
Q 014104 171 GTRICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCED---GTARVFDMYS--RKCS--QIIRMHCAPVTSL 239 (430)
Q Consensus 171 ~~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~~--~~~~~~~~~i~~~ 239 (430)
+..|.+|++++... +...........+.+.+....|.++..+ |.|..|.+.. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999885431 1111122223346666666667776554 6677766653 5432 2222223344788
Q ss_pred EecCC-CEEEEEe-CCCeEEEEeCCC-Cce---eEEEecCCCCC----------eEEEEEecCCCEEEEEe--CCCeEEE
Q 014104 240 SLSED-QLIISGS-SLGSIAISGLSS-DQR---VATLRSTDCTG----------IKTLCYNPCSRLVFAGT--TAGYASC 301 (430)
Q Consensus 240 ~~~~~-~~l~~~~-~dg~i~vwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~--~dg~i~i 301 (430)
+++++ ++++++. ..|.|.++-++. |.. +..+. |.+. +....++|++++|++.. .| .|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL 171 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence 88865 6777775 568999999865 332 22222 3333 88899999999998764 34 4999
Q ss_pred EeCCCCceeee----eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCC
Q 014104 302 WDLRTMKSLWE----TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTG 350 (430)
Q Consensus 302 ~d~~~~~~~~~----~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~ 350 (430)
|++..+++... ++ ....-.-|. |+|++++..... -+++|.+|.....
T Consensus 172 y~~~dg~L~~~~~~~v~-~G~GPRHi~-FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 172 YDLDDGKLTPADPAEVK-PGAGPRHIV-FHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEcccCccccccccccC-CCCCcceEE-EcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99997754322 22 224567788 999999886655 6899999998863
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=1.1e-07 Score=55.92 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=35.9
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
++++.++.+ |...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788887 889999999999999999999999999997
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=0.0002 Score=62.01 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=133.0
Q ss_pred EEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCC--
Q 014104 117 QCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSR-- 189 (430)
Q Consensus 117 ~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~-- 189 (430)
++.|. ++ ++++--..+.|..|+..+++.. .+..+. ...+.+...+..++.+..+.+.++|..+++. +....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCC
Confidence 45563 45 5555556889999999886553 344443 5667777333555544556667779888753 22221
Q ss_pred --CCceeeeeEEEEcCCceEEEecC--------CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEE
Q 014104 190 --EGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIA 257 (430)
Q Consensus 190 --~~~~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~ 257 (430)
........++.+.+...++.... |.|..++.. ++...... .-...+.++|+|+ +.| ++-+..+.|.
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeE
Confidence 22333344555555534443322 568888876 55443333 3456789999986 544 4667888999
Q ss_pred EEeCCCCce----eEEEecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe-eCCC
Q 014104 258 ISGLSSDQR----VATLRST--DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL-QNDT 330 (430)
Q Consensus 258 vwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-s~~~ 330 (430)
.+++..... ...+... ..+....++++++|++.++....+.|.++|.+ ++.+..+......+++++ | .++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~-fgg~~~ 237 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA-FGGPDG 237 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE-EESTTS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE-EECCCC
Confidence 999863221 1222111 11247889999999988888888999999988 888888776656888998 6 5666
Q ss_pred CeEEEE
Q 014104 331 STLVVG 336 (430)
Q Consensus 331 ~~l~s~ 336 (430)
+.|+..
T Consensus 238 ~~L~vT 243 (246)
T PF08450_consen 238 KTLYVT 243 (246)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 655543
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.64 E-value=2.9e-05 Score=65.10 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=119.5
Q ss_pred cCCeEEEEeCCCeEEEEecCCC--eeEEeeecC----CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC----C
Q 014104 121 KRGLILTGVGDKVMRLWSLEGY--KCVEEYSLP----NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS----R 189 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~----~ 189 (430)
++|.++..-.|..|.|=..... ..+.+...+ ..-.-++|+||+..|+ +...|+|+++|+.+.+.-... .
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 4666666667777777654431 222222222 2335599999999999 888999999999875421110 0
Q ss_pred CC---ceeeeeEEEEcC------CceEEEecCCeEEEEECCCC-----eeeEEee---cCCCCeEEEEecCC-CEEEEEe
Q 014104 190 EG---TFMKGLCMRYFD------PEAVVGCEDGTARVFDMYSR-----KCSQIIR---MHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 190 ~~---~~~~~~~~~~~~------~~l~~~~~dg~i~vwd~~~~-----~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
.+ ..+..+.+.... ..|++-..+|.++-|-+..+ +..+.+. .+...|.++.++|+ ++|+.|+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 11 111122222211 12777778888877765322 2333333 23568999999987 6666664
Q ss_pred C-CC----------eEEEEeCCCCceeEE----------------------------EecCCCCCeEEEEEecCCCEEEE
Q 014104 252 S-LG----------SIAISGLSSDQRVAT----------------------------LRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 252 ~-dg----------~i~vwd~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
. .. -+..|.+-++.+-.+ ........|..|..+|||..||+
T Consensus 167 ~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ 246 (282)
T PF15492_consen 167 CEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC 246 (282)
T ss_pred cCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE
Confidence 2 11 355665433221100 01113457999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecC
Q 014104 293 GTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
...+|.|.+|++.+.+....+..+
T Consensus 247 ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 247 IHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEcCCeEEEEecCcchhhcccchh
Confidence 999999999999987776665544
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.1e-06 Score=81.18 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
.|....+..++-|+.+|.|++++.. +.. .+...|... -..+.++++|+.||+|.|..+-+.+...++. ...
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~r 113 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--FKR 113 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe--cCC
Confidence 3444455568999999999999974 444 344345443 1256899999999999999999988887776 566
Q ss_pred CeEEEEEecC-----CCEEEEEeCCCeEEEEeCCCCcee--eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 277 GIKTLCYNPC-----SRLVFAGTTAGYASCWDLRTMKSL--WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 277 ~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
++.+++++|+ .+.+++|+.-| +.++.-+-.... ..+....++|.++. | .|.++|=++.+| |+|||+.+
T Consensus 114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~-W--~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK-W--RGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE-e--cCcEEEEecCCC-cEEEeccc
Confidence 9999999998 46788999888 777764321111 13445568999998 5 588888888777 99999999
Q ss_pred CceEEEEEecc
Q 014104 350 GEVLSRCVMDI 360 (430)
Q Consensus 350 ~~~~~~~~~~~ 360 (430)
++.+..++...
T Consensus 189 ~~~l~~i~~p~ 199 (846)
T KOG2066|consen 189 RQRLTNIPPPS 199 (846)
T ss_pred cceeeccCCCC
Confidence 88888776543
No 314
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.59 E-value=0.00023 Score=72.65 Aligned_cols=194 Identities=10% Similarity=-0.005 Sum_probs=126.4
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEE----EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIW----RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
..+..+.+-++...++ +..+|.|.+. +......-..+.-.......+|+++...++..+.++++.+.+- +...+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEE
Confidence 3455566777777666 8889999998 5555543333333444567888888888888888888877643 11111
Q ss_pred EE------------------------eec------------------------CCCCeEEEEecC-CCEEEEEeC---C-
Q 014104 227 QI------------------------IRM------------------------HCAPVTSLSLSE-DQLIISGSS---L- 253 (430)
Q Consensus 227 ~~------------------------~~~------------------------~~~~i~~~~~~~-~~~l~~~~~---d- 253 (430)
.. |+| +...-..++|-. +.++++.+. .
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 11 100 111234566763 478887764 2
Q ss_pred --CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeee----cCCCceEEEE
Q 014104 254 --GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETR----ISPNVVYSLQ 324 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~----~~~~~v~~l~ 324 (430)
..++||+- .|....+-+. ..+--.+++|.|.|+++|+.-. ...|.+|. ++|-...++. .....|..+.
T Consensus 235 ~~R~iRVy~R-eG~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 235 SRRVIRVYSR-EGELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred ceeEEEEECC-CceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence 57999995 4776555542 4445567899999999987654 33466665 3443333332 3446789998
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|++|+..|+..-.|. |.+|-..+..
T Consensus 312 -Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 312 -WNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred -ECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 999999999877665 9999988765
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-06 Score=76.63 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=157.3
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCc--cc---ccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeec--C
Q 014104 162 DESKIV-GLIGTRICIWRRNGLR--SV---FPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRM--H 232 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~--~ 232 (430)
..+++. ++.||.++.|....-. .. +..+.+ ....++.+..+-.+.+.+. |..++++|+++-..+..++. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 445555 8999999999876522 11 111111 1223444555555777677 99999999987665543332 1
Q ss_pred CCCeEEEEecCC---CEEE-EEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 233 CAPVTSLSLSED---QLII-SGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT- 306 (430)
Q Consensus 233 ~~~i~~~~~~~~---~~l~-~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 306 (430)
.+.+. ...+++ ..++ +.-.++.+.++|-.... ...-+.+-|..+|..+.++|.+..+++....|.|.-|....
T Consensus 98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 22222 222344 2333 34467899999976543 44455555888999999999999999999999999998872
Q ss_pred -----Cceeee---------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 307 -----MKSLWE---------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 307 -----~~~~~~---------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
.+.... +........++. |+|+|..+.+-+.|..|++++..+|+.++.+...........-++-+
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E-fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFE-FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceE-EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 111111 122235567887 99999999999999999999999999988887543321111111111
Q ss_pred eEEEeecccccCCcccccCCCCCCC-CeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRP-PITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
...+.-++.+..+..+. + |.. .-+.+.|| +++|+-|+-=| |+|.++.+++
T Consensus 256 l~~VelgRRmaverele---k-~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELE---K-HGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred cceeehhhhhhHHhhHh---h-hcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 11111112222111111 1 222 23445564 78888777654 7777777664
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=2.3e-05 Score=74.07 Aligned_cols=106 Identities=6% Similarity=0.039 Sum_probs=75.4
Q ss_pred CCeEEEEeCCC-----CceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce------------eeeee
Q 014104 253 LGSIAISGLSS-----DQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS------------LWETR 314 (430)
Q Consensus 253 dg~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~ 314 (430)
++.|.+.|.++ .+.+..+. -......+.++|||+++++++ .+.+|.++|+.+.+. +.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 35688889887 35555565 455788999999999888655 488999999987553 33333
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC----------CceEEEEEeccCc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT----------GEVLSRCVMDIGS 362 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~ 362 (430)
...++. ..+ |+++|....|-.-|..|..||+.. ...+..+..|-+.
T Consensus 373 vGlGPL-HTa-FDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 373 LGLGPL-HTA-FDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred cCCCcc-eEE-ECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 333333 344 888998888888999999999985 3455555555443
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=0.00022 Score=61.70 Aligned_cols=200 Identities=13% Similarity=0.031 Sum_probs=124.1
Q ss_pred EEEEecC-CCEEE-EEeCCe-EEEEEcCCCcccc--c-CCCCceeeeeEEEEcCCceEEEe-----cCCeEEEEECC-CC
Q 014104 156 LVDFDFD-ESKIV-GLIGTR-ICIWRRNGLRSVF--P-SREGTFMKGLCMRYFDPEAVVGC-----EDGTARVFDMY-SR 223 (430)
Q Consensus 156 ~~~~~~~-~~~l~-~~~~~~-i~vwd~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~vwd~~-~~ 223 (430)
.++.+|. +..++ +..-|. ..+||..+++... . ....+..---++++++..|++.- ..|.|-|||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 3555663 33333 444443 5667777766332 1 12222222345555666666543 35889999998 56
Q ss_pred eeeEEeecCCCCeEEEEecCC-CEEEEEe------------------CCCeEEEEeCCCCceeEEEec---CCCCCeEEE
Q 014104 224 KCSQIIRMHCAPVTSLSLSED-QLIISGS------------------SLGSIAISGLSSDQRVATLRS---TDCTGIKTL 281 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~ 281 (430)
+.+.++..|.-.-..+.+.|+ ..|+.+. .+-.+...|..+|+.+.+..- .|...+..+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 777788766555566777766 3555542 234566778888888777432 255589999
Q ss_pred EEecCCCEEEEEeCCCe-------EEEEeCCCCceeeeee-------cCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEE
Q 014104 282 CYNPCSRLVFAGTTAGY-------ASCWDLRTMKSLWETR-------ISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLD 346 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd 346 (430)
+++++|..++..-..|. |.+++.. +.+..+. .-.+.+-+++ +++++.++++.+ ..|.+.+||
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa-~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA-ADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE-EeCCCCEEEEECCCCCEEEEEE
Confidence 99999987666544332 3344332 2222222 2236788888 999998776555 778999999
Q ss_pred cCCCceEEEEEe
Q 014104 347 QNTGEVLSRCVM 358 (430)
Q Consensus 347 ~~~~~~~~~~~~ 358 (430)
..+++.+.....
T Consensus 246 ~~tg~~~~~~~l 257 (305)
T PF07433_consen 246 AATGRLLGSVPL 257 (305)
T ss_pred CCCCCEeecccc
Confidence 999998887654
No 318
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.3e-05 Score=75.66 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=146.6
Q ss_pred ceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC
Q 014104 114 GVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 114 ~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
.-.++.++ .|++|-|+. ..|.+-|..+.+.+..++.| ..+..+.|.|.+.... .
T Consensus 17 N~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~-----------------l------ 72 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRD-----------------L------ 72 (1062)
T ss_pred cccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchh-----------------c------
Confidence 35567775 457777765 47888899999999999887 4566688877543210 0
Q ss_pred ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC---C--CEEEEEeCCCeEEEEeCCCCce
Q 014104 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE---D--QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~---~--~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
..-......++++...|.|.+||...+..+..+..|.+++..++|-+ + ..+++-....++.+|+..+|+.
T Consensus 73 -----lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 73 -----LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred -----cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 00001122378888899999999999988889998999999999974 2 4677777788999999999999
Q ss_pred eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCC-------CceeeeeecCCC----------------c---
Q 014104 267 VATLRSTDCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRT-------MKSLWETRISPN----------------V--- 319 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~----------------~--- 319 (430)
..+... ......|+.++|- .+.+..-+..|.+.+-+.-. ++..+.-..|.+ .
T Consensus 148 ~Wk~~y-s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDY-SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eecccc-CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 988876 3346777888884 45666666677776665431 222221111111 0
Q ss_pred ------eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 320 ------VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 320 ------v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
...++ |+|.-+.++-......+.++|++-..++.......+
T Consensus 227 a~fity~a~fa-f~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 227 AYFITYCAQFA-FSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred hhHHHHHHhhh-cChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 11223 567666555556677899999987777777765444
No 319
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.57 E-value=0.00011 Score=66.25 Aligned_cols=233 Identities=9% Similarity=0.045 Sum_probs=148.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE----------------eCC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL----------------IGT 172 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~ 172 (430)
-.-++..+.+ |.| +|++.. -..|.+|+...+..+..+.+ ..+..+.|+|++.+|..- .++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhh-ccceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3446777777 456 555544 45699999887775555554 477889999999998732 124
Q ss_pred eEEEEEcCCCcccccCC--CCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-EEeecC-CCCeEEEEecCC--
Q 014104 173 RICIWRRNGLRSVFPSR--EGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-QIIRMH-CAPVTSLSLSED-- 244 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-~~~i~~~~~~~~-- 244 (430)
.+.+||..++..++... ... .-..+-++.++.+++-- ....++++++ ++... ..+..- ...|....++|.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 58999999988654322 111 11245666666663332 2347899997 44321 111111 245778888874
Q ss_pred -CEEEE-----EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe-----------CCCeEEEEeCCCC
Q 014104 245 -QLIIS-----GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-----------TAGYASCWDLRTM 307 (430)
Q Consensus 245 -~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~ 307 (430)
..|+. .+.++++++|.+..+..+.+..- ....-..+.|++.|++|.+-. ....+++++++..
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 23333 35678999999987776654432 223345688899998766421 1245888888743
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCC
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTG 350 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~ 350 (430)
... ....-.++|.... |.|.++.+++.+ .+-.+.++|++..
T Consensus 266 ~i~-V~~~~~~pVhdf~-W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 266 SIP-VEKDLKDPVHDFT-WEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccc-eeccccccceeee-ecccCCceeEEecccccceeecccccc
Confidence 322 2224468999998 999988765544 7788999998843
No 320
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=7.4e-05 Score=69.64 Aligned_cols=187 Identities=12% Similarity=-0.056 Sum_probs=112.4
Q ss_pred ceeEEEe-cCC-e-EEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-Ee--CCeEEEEEcCCCc
Q 014104 114 GVDQCRM-KRG-L-ILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LI--GTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~-~~~-~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~--~~~i~vwd~~~~~ 183 (430)
.+....| |+| . ++..+.+ ..|.++|+.+++........+......|+|||+.++ . .. +..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 3445566 555 3 5544433 568888999887665555445555678999999887 3 22 3568888988776
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC------
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL------ 253 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d------ 253 (430)
...............+++++..++..+. .+ .|.+.|+.+++..+.... ... ...|+|+ +.++..+..
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccC
Confidence 3222211112223467778877555543 23 688889987766443321 111 2488876 655554432
Q ss_pred ---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEeCCC
Q 014104 254 ---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-G--YASCWDLRT 306 (430)
Q Consensus 254 ---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~ 306 (430)
..|.+.|+.++.. +.+.. . .......|+|||+.++....+ + .+.+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~-~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTA-N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCC-C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889887765 34442 1 233357899999987755432 2 366666653
No 321
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.50 E-value=7.6e-06 Score=68.99 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=129.3
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc---c----cccCCCCce-----------eeeeEEEEcCCc--eEEEe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR---S----VFPSREGTF-----------MKGLCMRYFDPE--AVVGC 210 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~---~----~~~~~~~~~-----------~~~~~~~~~~~~--l~~~~ 210 (430)
+.+..+.|...|.+++ |...|.|.++.-+... . -++.++... ...+.+...... ++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 4456677888888888 6667889888765433 1 123332221 111222222222 77788
Q ss_pred cCCeEEEEECCCCee-------------------e-----------------------EEe-ecCCCCeEEEEecCCCEE
Q 014104 211 EDGTARVFDMYSRKC-------------------S-----------------------QII-RMHCAPVTSLSLSEDQLI 247 (430)
Q Consensus 211 ~dg~i~vwd~~~~~~-------------------~-----------------------~~~-~~~~~~i~~~~~~~~~~l 247 (430)
.|.+|++|.+..... + +.+ ..|..-|.++.++.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999998753200 0 001 246667788889877444
Q ss_pred EEEeCCCeEEEEeCCCCceeEE---EecCCC-----CCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce------eee
Q 014104 248 ISGSSLGSIAISGLSSDQRVAT---LRSTDC-----TGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS------LWE 312 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~---~~~~~~-----~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~ 312 (430)
+..+.|-.|-+|++.-...-.. ++. |. .-|++..|+|.. +.+.-.+..|.|++-|++...+ +.+
T Consensus 187 ~lSaDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 187 LLSADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 4456688999999874333222 221 21 257888999865 4555667889999999984321 111
Q ss_pred ----------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEeccC
Q 014104 313 ----------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDIG 361 (430)
Q Consensus 313 ----------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~ 361 (430)
+.+-...|..+. |+++|+++++-+. -+|++||++.. .++.++..|..
T Consensus 266 ~~~D~v~~~ff~eivsSISD~k-Fs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFK-FSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hccCcccchhHHHHhhhhcceE-EcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 112235677888 9999999988764 58999999854 57888876654
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=8.3e-06 Score=77.36 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=118.6
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
.+..++ |+..|.+++.+.+........+... ...|.++++|+.||+|.|-.+-+.+....+. ...++.+++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 455666 8999999999887653221111111 3356679999999999999998888776665 457899999
Q ss_pred ecCC------CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 241 LSED------QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 241 ~~~~------~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
++|+ ..+++|+..| +.++.-+- |......-....++|.++.| .|+++|-++.+| |++||+.+.+.+..+
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeecc
Confidence 9986 5799999888 77765332 11111112225679999999 688999888888 999999988877665
Q ss_pred ecCCCce------EEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVV------YSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v------~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.....+ ..+. |.++. .|+.| +..+|+|..++
T Consensus 196 ~~p~~~~R~e~fpphl~-W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLH-WQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceE-ecCCC-eEEEe-cCCeEEEEEEe
Confidence 5433322 2333 54443 45444 55578888887
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3e-05 Score=67.79 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=139.6
Q ss_pred EEeccccceeEEEec---CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~ 181 (430)
-+.+|...|..++|+ .|++..++.+.+|+|.|+++...+..+..+..+...+|..|....+ |-..|.|.+||+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 455777889999994 3489999999999999999999999999888899999998876655 67789999999987
Q ss_pred CcccccCCCC--ceeeeeEEEEcCCc-------eEEEecCCeEEEEECCCC----eeeEEeecCCCCeEEEEecC--CCE
Q 014104 182 LRSVFPSREG--TFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSE--DQL 246 (430)
Q Consensus 182 ~~~~~~~~~~--~~~~~~~~~~~~~~-------l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~ 246 (430)
.+..+....+ ....+..+.+..+. ++++... ....|++.-. .++..+. ..+...++.+.+ +..
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHL 345 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccC-CCcceeeeeecCccceE
Confidence 6643222211 11112222222221 3333322 2445554321 1222222 245566666665 244
Q ss_pred EEEEeCCC------eEE-EEeCCCCceeEEEecCC-CCC------eEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceee
Q 014104 247 IISGSSLG------SIA-ISGLSSDQRVATLRSTD-CTG------IKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 247 l~~~~~dg------~i~-vwd~~~~~~~~~~~~~~-~~~------v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~ 311 (430)
+++.-.+. .+- --|-.+|..+..-+..+ ... -..+.-.++.++++ +|...+.+.+||..+.+.+.
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 44443211 011 11223343332222111 110 01111223445555 55566789999999999998
Q ss_pred eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcC
Q 014104 312 ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~ 348 (430)
++... .+|..+..+..++. +|++- .|..++||..+
T Consensus 426 ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 426 TLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ecccC-cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 88754 77888875555554 55544 56788888654
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.00019 Score=71.65 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred cceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc----CCCccc
Q 014104 113 VGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR----NGLRSV 185 (430)
Q Consensus 113 ~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~----~~~~~~ 185 (430)
+.|.++.| - .+.++.+..+|.|.+-|.++......-...+++.+++|+||++.++ .+..+++.+-+- -..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 57888888 3 3477778888999998988866554444567899999999999999 777677665332 111111
Q ss_pred ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-----ee------EEeecCCCCeEEEEecC-CCEEEEE---
Q 014104 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----CS------QIIRMHCAPVTSLSLSE-DQLIISG--- 250 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~------~~~~~~~~~i~~~~~~~-~~~l~~~--- 250 (430)
.. ....... .+.++....-.-+.-..|+ .+ .....+ +.=+++.|-- ++++++.
T Consensus 149 ~~-d~~~~sk----------~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 149 DA-DDERKSK----------FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cc-ccccccc----------cceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEe
Confidence 00 0000000 2333332211111111110 00 000111 1224678873 4677763
Q ss_pred --eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCC---CceeeeeecCCCceEE
Q 014104 251 --SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRT---MKSLWETRISPNVVYS 322 (430)
Q Consensus 251 --~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~---~~~~~~~~~~~~~v~~ 322 (430)
.....|++||-+ |..-..-. ...+.-.+++|-|.|..+++-. .|+.|.+|.-.. ++....+......|..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 333799999976 54432222 2444567899999999988653 456788887432 2222223333344889
Q ss_pred EEEeeCCCCeEEE---EcCCCeEEEEEcCCCc
Q 014104 323 LQHLQNDTSTLVV---GGIDGVLRVLDQNTGE 351 (430)
Q Consensus 323 l~~~s~~~~~l~s---~~~dg~i~vwd~~~~~ 351 (430)
++ |+.++..|++ ......|++|-+.+..
T Consensus 295 L~-Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LA-WNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ee-ecCCCCceeeeecccccceEEEEEecCeE
Confidence 98 9999998887 4455569999987654
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.44 E-value=0.0005 Score=60.32 Aligned_cols=222 Identities=17% Similarity=0.163 Sum_probs=138.8
Q ss_pred CeEEEEecCCCeeEEeeecCCc--------eeEEEEecCCCEEE---EEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA--------ASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~---~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
-.|.+||..+-.....+..+.. ....+++.|+++++ .+-...|.|.|++.++.+........ ..+-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iy 143 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIY 143 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEE
Confidence 3689999999988888776543 12377888999877 34467899999998875543333322 2222
Q ss_pred EcC-CceEEEecCCeEEEEECC-CCeeeEEe----ecCCCCeE-EEEec-CCCEEEEEeCCCeEEEEeCCCCcee--EEE
Q 014104 201 YFD-PEAVVGCEDGTARVFDMY-SRKCSQII----RMHCAPVT-SLSLS-EDQLIISGSSLGSIAISGLSSDQRV--ATL 270 (430)
Q Consensus 201 ~~~-~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~i~-~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~--~~~ 270 (430)
+.+ ..+.+-|.||.+.-..+. .|+..... .....++. .-++. .+..++--+.+|.|+--|+...... ..+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 333 338899999999988887 45544222 11122222 22333 2345666788999999888755432 222
Q ss_pred ecC---------CCCCeEEEEEecCCCEEEEEeC---CC-------eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 271 RST---------DCTGIKTLCYNPCSRLVFAGTT---AG-------YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 271 ~~~---------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
... ..+.-.-+++++..+.|++-.. ++ .|-++|+.+++.+.++... ..+.++. .+.+.+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~-Vsqd~~ 301 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIA-VSQDDK 301 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEE-EESSSS
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEE-EccCCC
Confidence 110 0123445778876666654322 11 4888899999999988753 4677888 777766
Q ss_pred -eEEEE-cCCCeEEEEEcCCCceEEEEEe
Q 014104 332 -TLVVG-GIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 332 -~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+|++. ..++.+.+||..+|+.++++..
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 66554 4689999999999999999875
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=0.00065 Score=56.36 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=116.3
Q ss_pred EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-EEecC-CC
Q 014104 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSE-DQ 245 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-~~~~~-~~ 245 (430)
++..+.+.-.|..++...++..-+......++. .++.++.|+..|.+++.+..+|..++.+..-. .|.+ ....+ +.
T Consensus 29 gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~g 106 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGG 106 (354)
T ss_pred ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCc
Confidence 888899999999999887776666555544444 56669999999999999999998877776432 2222 22233 47
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l 323 (430)
.+..|+.|+..+..|.++..++.+.+. ..+...+=+..|-...|+.+...|.+.--...++ ..+..... .+++.+-
T Consensus 107 lIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~-~~PiF~s 184 (354)
T KOG4649|consen 107 LIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR-FGPIFAS 184 (354)
T ss_pred eEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc-CCccccC
Confidence 999999999999999999999988764 2222233344553334444555565544444433 22211111 1333221
Q ss_pred -EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 324 -QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 324 -~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.+. +..+..+.-||.+.-+| +.|+.+.++.
T Consensus 185 plcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 185 PLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 111 34566666788888888 6677776554
No 327
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.42 E-value=0.00052 Score=65.99 Aligned_cols=239 Identities=14% Similarity=0.116 Sum_probs=142.3
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce--eEEEEe---cCCCEEEEEe------CCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--SLVDFD---FDESKIVGLI------GTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~---~~~~~l~~~~------~~~i~vwd~~~~~~~~~ 187 (430)
++.++.++.++.|+.+.-.|..+|+.+......... ..+.-+ .++..+++.. +|.|.-+|.++++.++.
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 344567888889999999999999998776542111 111111 2444444432 58899999998886543
Q ss_pred CCCCcee-------------------------------eeeEEEEcCC--ceEEEec-----CC-----------eEEEE
Q 014104 188 SREGTFM-------------------------------KGLCMRYFDP--EAVVGCE-----DG-----------TARVF 218 (430)
Q Consensus 188 ~~~~~~~-------------------------------~~~~~~~~~~--~l~~~~~-----dg-----------~i~vw 218 (430)
....... .-..++.+.. .++.+.. ++ +|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 2221100 0011122322 2444431 12 67778
Q ss_pred ECCCCeeeEEeecCCCCeE---------EEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEec--------C---C
Q 014104 219 DMYSRKCSQIIRMHCAPVT---------SLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRS--------T---D 274 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~---------~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~---~ 274 (430)
|++||+....++.....++ -+.+. .+ ..++.+..+|.+.+.|.++|+.+...+. . .
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 9999998877764322222 22221 23 3788899999999999999988632100 0 0
Q ss_pred C-CCe----------------------------EEEEEecCCCEEEEEeCC-----------------------------
Q 014104 275 C-TGI----------------------------KTLCYNPCSRLVFAGTTA----------------------------- 296 (430)
Q Consensus 275 ~-~~v----------------------------~~~~~~~~~~~l~~~~~d----------------------------- 296 (430)
. .++ ..++++|+..+++....+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 000 125666665555443222
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|.|.-+|+.+++.+.+.........+.. ...+.+++.++.+|.++.+|.++|+.+..+...
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l--~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVL--ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcce--EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4577888888888876653322222221 224567778888999999999999999988764
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=0.00016 Score=66.84 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred eEEEEECCCCe--eeEEeecCCCCeEEEEecC--CCEEEEE----eCCCe----EEEEeCCCCce--eEEEecCCCCCeE
Q 014104 214 TARVFDMYSRK--CSQIIRMHCAPVTSLSLSE--DQLIISG----SSLGS----IAISGLSSDQR--VATLRSTDCTGIK 279 (430)
Q Consensus 214 ~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~--~~~l~~~----~~dg~----i~vwd~~~~~~--~~~~~~~~~~~v~ 279 (430)
.+.++.+..++ .+..+... ....++.|+. +..+.+. +.+|. -.+|++..++. +....-.....|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE-~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTE-NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEec-CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 45555554332 23333322 2335677762 2344332 33442 34566554432 2222223677999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+++++|+...|+.|+.||.|.+||...+... +....-..+.++ |+|+|..+++|+..|.+.+||+.-.
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~ia-WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIA-WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEE-EcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999998766333 222334456676 9999999999999999999998744
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.38 E-value=0.00015 Score=62.77 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=128.3
Q ss_pred EEEEecCC--CEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCC-eEEEEEecCCCEEEEEe-----CCCeEEEEeCC-C
Q 014104 237 TSLSLSED--QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTG-IKTLCYNPCSRLVFAGT-----TAGYASCWDLR-T 306 (430)
Q Consensus 237 ~~~~~~~~--~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~-~ 306 (430)
..++.+|. ..++.+-.-| ...+||.++++....+....... .-.-.|+|||++|++.- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 35666663 5666666666 47789999999887776422111 12468999999999863 35789999999 6
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEc------------------CCCeEEEEEcCCCceEEEEEe----ccCcce
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGG------------------IDGVLRVLDQNTGEVLSRCVM----DIGSAS 364 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~----~~~~~~ 364 (430)
.+.+.++..|.-.--.+. +.|||+.|+.+. .+.++.+-|..+|+.+..... |...+.
T Consensus 88 ~~ri~E~~s~GIGPHel~-l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELL-LMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred cEEEeEecCCCcChhhEE-EcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 778888887765555666 889997777653 244667778889999888654 555677
Q ss_pred eeeccCCceEEEeecccccC------------CcccccCC------CCCCCCeeEEEEc--CeEE-EEeeCCCeEEEEEe
Q 014104 365 SSSNKVSGVIERNEGRRLSA------------GCCIDRIP------KTIRPPITCLAVG--MKKV-VTTHNSKYIRLWKF 423 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~------------~~~~~~~~------~~h~~~v~~v~~~--~~~l-~t~~~Dg~v~vw~~ 423 (430)
-++...||.+..-.-+.-+. +..+..+. ..-...|-+|+++ +..+ +|+-.-|.+.+||.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 88888889885332222111 11111111 1234678889994 5555 66667889999999
Q ss_pred cCCC
Q 014104 424 NYSD 427 (430)
Q Consensus 424 ~~~~ 427 (430)
.+++
T Consensus 247 ~tg~ 250 (305)
T PF07433_consen 247 ATGR 250 (305)
T ss_pred CCCC
Confidence 8875
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.6e-05 Score=72.47 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=123.3
Q ss_pred eEEEEecCCCEEE-EEeCCeEEEEEcCCCc-ccccCCCCceeeeeEEEEcCCceEEEecCC-----eEEEEECCCC----
Q 014104 155 SLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSR---- 223 (430)
Q Consensus 155 ~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~---- 223 (430)
.+-++++.+..++ |+.+|.|.+++-.-.. .-+......++..+-.......|++.+.|+ .+++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4566777777777 8899998887754333 223333222221121221223366666554 5899998642
Q ss_pred --eeeE--Eeec-----CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC---CCceeEEEecCCCCCeEEEEEecCCCE-
Q 014104 224 --KCSQ--IIRM-----HCAPVTSLSLSED-QLIISGSSLGSIAISGLS---SDQRVATLRSTDCTGIKTLCYNPCSRL- 289 (430)
Q Consensus 224 --~~~~--~~~~-----~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~- 289 (430)
+++. .+.. ...++.+++++.+ ..+++|-.+|.|..+.-. ..-....+......+|+.+++..++..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 3331 1112 2457889999966 899999999999988522 111122222224559999999988876
Q ss_pred EEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 290 VFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+++++. ..|.+|.+....+ ...+..|...+.|.. +++....+++++ +..+.+||.....+-.++.
T Consensus 187 lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss-~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSS-FSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEec-ceeEEEEecCCCcceeeeccCCccceeee-cCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 444444 3599999984432 344677777888887 666555455554 4579999988655555565
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7e-05 Score=65.59 Aligned_cols=222 Identities=13% Similarity=0.110 Sum_probs=120.7
Q ss_pred EEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEE
Q 014104 134 MRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 209 (430)
+++.+..+.+...-+..+ ..+..++|+|..+-|+ ++.+..|.+.|+++...+..-........+||.-+... +++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 444444443333322222 2355699999887544 88999999999999876544444455666777776655 8888
Q ss_pred ecCCeEEEEECCCCee-eEEeec--CCCCeEEEEecC-------CCEEEEEeCCCeEEEEeCCC--CceeEEEecCCCCC
Q 014104 210 CEDGTARVFDMYSRKC-SQIIRM--HCAPVTSLSLSE-------DQLIISGSSLGSIAISGLSS--DQRVATLRSTDCTG 277 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~-~~~~~~--~~~~i~~~~~~~-------~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~ 277 (430)
-.+|.|.+||++..+- +..+.+ ...+|..++.-+ +.+++..+. .+..|.+.- +.....++....+.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence 8999999999986542 222221 233555544432 233433333 244555431 22222233223456
Q ss_pred eEEEEEecCCCEEEEEeCCC-------eEEE-EeCCCCceeeeee-cCCC-------ceEEEEEeeCCCCeEE-EEcCCC
Q 014104 278 IKTLCYNPCSRLVFAGTTAG-------YASC-WDLRTMKSLWETR-ISPN-------VVYSLQHLQNDTSTLV-VGGIDG 340 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~-~~~~-------~v~~l~~~s~~~~~l~-s~~~dg 340 (430)
..++.+++-.+.++...... .|-. -|..+|.++...+ .+.+ .-..+. -.++..+++ ++...+
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~-~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIR-AVEDNNYIVVVGDSTN 411 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccccccccee-ccccccEEEEecCCcc
Confidence 66677766555555433221 1111 1222333332211 1100 001111 234555554 455668
Q ss_pred eEEEEEcCCCceEEEEEe
Q 014104 341 VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~ 358 (430)
.+.+||..+++.++++..
T Consensus 412 ~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLAL 429 (463)
T ss_pred eeEEeccchhheeeeccc
Confidence 899999999999999875
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=6.5e-05 Score=70.55 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC--CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS- 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~- 226 (430)
+..+...+++..+++++ |++.|.+++|+-.+++...... ......+.+++.+...+++|+..|.|.++-++.+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34556678888999998 9999999999999888654444 2233444555566666889999999999987654321
Q ss_pred --E--E-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc----eeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 014104 227 --Q--I-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 227 --~--~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
. . -+.|...|++++|+++ ..+++|...|+|..-.+.+.. ..+.+.. ..+.|-.+.+. ++.+|++....
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~-q~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL-QSYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc-cceehHhhhhh
Confidence 1 1 1236789999999976 789999999999988887621 1122222 44567666665 34444444333
Q ss_pred CeEEEEeCCCCceeeeee--cCCC-ceEEEEEeeC---CCCeEEEEcCCCeEEEEEcC-CCceEEEEEec
Q 014104 297 GYASCWDLRTMKSLWETR--ISPN-VVYSLQHLQN---DTSTLVVGGIDGVLRVLDQN-TGEVLSRCVMD 359 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~--~~~~-~v~~l~~~s~---~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~ 359 (430)
..+++++.+. +..+- ...+ .-++.+||.- ..+-.+.++.-| .|+|..+ .|+.+++....
T Consensus 191 --~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk 256 (726)
T KOG3621|consen 191 --CILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFK 256 (726)
T ss_pred --hheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehh
Confidence 3455554332 11110 0111 1233333322 122333344444 7888765 47777777653
No 333
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.8e-07 Score=76.78 Aligned_cols=56 Identities=30% Similarity=0.434 Sum_probs=47.3
Q ss_pred CCCCCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHH
Q 014104 15 KRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK 70 (430)
Q Consensus 15 ~~~~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~ 70 (430)
.+...+.--+.+||+||++-||+.|..++|.+++.|||+|+.++.|+.+|+.+-..
T Consensus 89 ~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 89 NRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred hcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 33334444478999999999999999999999999999999999999999765433
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00036 Score=67.19 Aligned_cols=202 Identities=9% Similarity=0.118 Sum_probs=123.1
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce--eEEEEecCCCEEE-EEeC-C----eEEEEEcCCCc--
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--SLVDFDFDESKIV-GLIG-T----RICIWRRNGLR-- 183 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~~~-~----~i~vwd~~~~~-- 183 (430)
.|.|+.-+.+.++.|+.+|.|.+.+- .-+.+..++..... ..+-...+...|+ .+.| + .+++|+++...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 67777777779999999999988873 33444666654332 2222222334555 3333 2 58999987431
Q ss_pred ----cc-----cc---CCCCceeeeeEEEEcCCceEEEecCCeEEEEECC----CCeeeEEeecCCCCeEEEEecC-CCE
Q 014104 184 ----SV-----FP---SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY----SRKCSQIIRMHCAPVTSLSLSE-DQL 246 (430)
Q Consensus 184 ----~~-----~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~~~~~~-~~~ 246 (430)
.+ +. ..+.....+++++.+-..+|+|-.+|.|..+.-. .|........-.++|+.+++.. +..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 11 11 1122334445555555559999999999988421 1222222233457999999984 433
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCC
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISP 317 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~ 317 (430)
++-+..-..|.+|.+....+.......+..++.|..+++....+++++... +.+||....++-..+. +|.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCCCcceeeeecCCCe
Confidence 222333467999998844433333333777999999997666566666554 9999998766666666 554
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0024 Score=56.41 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=130.9
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC------------
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS------------ 188 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~------------ 188 (430)
.+..|+.|..+| +.+++.........+.....+.-+...++-+.++.-.|+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccc
Confidence 344888999988 8999983333333333333477788888888888778899999998764432211
Q ss_pred -CCCceeeeeEEE----EcCCceEEEecCCeEEEEECCCC-----eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 189 -REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSR-----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 189 -~~~~~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
.......+..+. ..+...++......|.+|..... +..+.+. -...+.+++|.+ +.++.|.. ....+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~-~~i~v~~~-~~f~~ 161 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG-NKICVGTS-KGFYL 161 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC-CEEEEEeC-CceEE
Confidence 111111122222 11222344444458888877543 3445554 347788999984 45666654 45788
Q ss_pred EeCCCCceeEEEecCC-----------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eeecCCCceEEEEE
Q 014104 259 SGLSSDQRVATLRSTD-----------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETRISPNVVYSLQH 325 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~ 325 (430)
.|+.++.....+.... ..++..+... ++.+|++- |..-...|. .|+... .+.-. ....+++
T Consensus 162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-~~p~~~~- 235 (275)
T PF00780_consen 162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-SAPQSVA- 235 (275)
T ss_pred EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC-CchhEEE-
Confidence 8998776644432111 1134344443 45666653 333333343 354433 22222 3455665
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+ ...+|++.+. +.|.||++.++++++++...
T Consensus 236 ~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 236 Y--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred E--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3 3457877765 55999999999999998753
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=9.3e-07 Score=84.41 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEE
Q 014104 225 CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASC 301 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i 301 (430)
..+.+..|+...+|++|+-+ +.++.|+..|.|+++++.+|........ |...|+.+.-+.+|..+.+.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 44667778889999999954 8999999999999999999999888887 899999999999998877655433 4678
Q ss_pred EeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc----CcceeeeccCCceEEE
Q 014104 302 WDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI----GSASSSSNKVSGVIER 376 (430)
Q Consensus 302 ~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~s~d~~v~~ 376 (430)
|++.. +.+.+.+.+. .++. |+.....-+.|.......+||+.++.++.++-... ....++.++++..+..
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vk-Fsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVK-FSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCcccccccc----ceee-hhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 99865 4555555432 3455 66555545556656679999999998887744322 2347899999888876
Q ss_pred eec
Q 014104 377 NEG 379 (430)
Q Consensus 377 ~~~ 379 (430)
+++
T Consensus 1247 ndG 1249 (1516)
T KOG1832|consen 1247 NDG 1249 (1516)
T ss_pred eCc
Confidence 655
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.21 E-value=0.0017 Score=60.66 Aligned_cols=141 Identities=9% Similarity=0.031 Sum_probs=79.7
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
..+..++++|+++.++.+.+|.-.++.....+....+. ....+|.. ...+++-..+++|.++.--..+....++.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~----g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS----GLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-----SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc----eeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC
Confidence 34677999999999999999999999854433222111 11133333 34477777788888863222333233332
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
. ..+..+- .+.+|...+ ++.|.+||..+++.++.+.. . +|..+.|+++|.+++..+.+. +.+++..
T Consensus 108 ~-~~~~~If--~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v--~-~vk~V~Ws~~g~~val~t~~~-i~il~~~ 173 (443)
T PF04053_consen 108 P-FSVEKIF--GGNLLGVKS-SDFICFYDWETGKLIRRIDV--S-AVKYVIWSDDGELVALVTKDS-IYILKYN 173 (443)
T ss_dssp S-S-EEEEE---SSSEEEEE-TTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-S-EEEEEE-
T ss_pred C-cccceEE--cCcEEEEEC-CCCEEEEEhhHcceeeEEec--C-CCcEEEEECCCCEEEEEeCCe-EEEEEec
Confidence 1 1233333 366666555 44899999999999999973 2 489999999999999887664 8887754
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.18 E-value=0.0039 Score=54.87 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEE-E----------eCCeEEEEEcCCCcccc--cCCCC------c
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG-L----------IGTRICIWRRNGLRSVF--PSREG------T 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------~~~~i~vwd~~~~~~~~--~~~~~------~ 192 (430)
+.+.+.|.++++.+..+...-... +.++|+++.++. . ....|.+||..+-.... ..+.+ .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 479999999999888887643333 567999998762 1 22458999999865321 11111 1
Q ss_pred eeeeeEEEEcCCceEEE--ecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEE
Q 014104 193 FMKGLCMRYFDPEAVVG--CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVAT 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~ 269 (430)
......++.++..+++. +-.-+|.|.|+..++.+.++... + +..+--..++-|.+-+.||++....+. .|+...+
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 22334555555554443 33456888888888887777532 2 222222234567788889999988887 5555433
Q ss_pred Eec---CCCCCe-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eeecC----------CCceEEEEEeeCCCCeE
Q 014104 270 LRS---TDCTGI-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETRIS----------PNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 270 ~~~---~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~v~~l~~~s~~~~~l 333 (430)
... ....++ ..-++...+..++--+.+|.|+-.|+....... .+..- .+.-.-++ +++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A-~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA-YHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE-EETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee-eccccCeE
Confidence 211 111222 233444455555556788999998887544221 11110 01222344 65555544
Q ss_pred EEEc---CC-------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGG---ID-------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~---~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++.- .+ ..|-++|+.+++.+.++.... ++.+|+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-------------------------------------~~~Si~ 295 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-------------------------------------PIDSIA 295 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-------------------------------------EESEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-------------------------------------ccceEE
Confidence 4322 11 147778889999998887521 355666
Q ss_pred E--c-CeEEEE-eeCCCeEEEEEecCCCc
Q 014104 404 V--G-MKKVVT-THNSKYIRLWKFNYSDK 428 (430)
Q Consensus 404 ~--~-~~~l~t-~~~Dg~v~vw~~~~~~~ 428 (430)
. + ..+|++ ...++.|.+||..+|+.
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 6 2 334544 45689999999999864
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.10 E-value=0.00071 Score=48.89 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=66.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
|++|+.|..|++|+ ..+.+..+. ..+.|+++.-.....|+.+..+|+|-+|+- .+.+...+. ...+.++.+..
T Consensus 18 LlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~~~~~~~~~D 90 (111)
T PF14783_consen 18 LLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKS--KNQVTSMAFYD 90 (111)
T ss_pred EEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeecc--CCCeEEEEEEc
Confidence 99999999999998 446777776 456788888877788999999999999985 345555654 33466666543
Q ss_pred -CC---CEEEEEeCCCeEE
Q 014104 286 -CS---RLVFAGTTAGYAS 300 (430)
Q Consensus 286 -~~---~~l~~~~~dg~i~ 300 (430)
++ .-|++|-.+|.|-
T Consensus 91 ~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 91 INGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCCCCceEEEEEecCCeEE
Confidence 32 3788998888774
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00012 Score=70.23 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=80.3
Q ss_pred eeeEEEEcCCceEEEe----cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
.+.+|.+..|.+++++ ..|+|.||- ++|++..... ..-.+++++|+|. -.++.|-.-|.+.+|...+.+. ++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 4456666677766655 458888885 4676543332 1223567999997 4677788889999999776554 44
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 555588999999999999999999999999999765
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.0042 Score=57.89 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=88.1
Q ss_pred eeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-------ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc-e
Q 014104 196 GLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-------RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ-R 266 (430)
Q Consensus 196 ~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~ 266 (430)
++++.+... .|++-..||.++++|+. |+....+ ......+....+..+..++.. .++.+.+.+-.... .
T Consensus 83 iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt-~~~~~~~v~n~~~~~~ 160 (410)
T PF04841_consen 83 IVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT-GNNRFYVVNNIDEPVK 160 (410)
T ss_pred EEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC-CCCeEEEEeCccccch
Confidence 355555444 48888999999999985 4331111 111122222233323444333 34444443322211 1
Q ss_pred eEEEe---cCCC----C-CeEE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 267 VATLR---STDC----T-GIKT-LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 267 ~~~~~---~~~~----~-~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.+.+. .... . .... ..++.+....+....++.+.+.+....+. +. ..+++..|+ +||+|+++|.-.
T Consensus 161 ~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ia-vSpng~~iAl~t 235 (410)
T PF04841_consen 161 LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIA-VSPNGKFIALFT 235 (410)
T ss_pred hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEE-ECCCCCEEEEEE
Confidence 11111 1000 0 0100 22444444445545555566444332211 22 236799998 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEEec--cCcceeeeccCCceEE
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMD--IGSASSSSNKVSGVIE 375 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~s~d~~v~ 375 (430)
.+|.+.+...+-.+.+..+... .....+.-++.|..+.
T Consensus 236 ~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 236 DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 9999999987666666666655 2233444444454443
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0014 Score=61.86 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=96.3
Q ss_pred eeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeee-c-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc---c--c
Q 014104 115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS-L-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS---V--F 186 (430)
Q Consensus 115 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~---~--~ 186 (430)
.+|++..+.+++.|+.-|.+.+|+-.+++....-. + +....+.+++++..+++ ++..|.|.++-++.... . .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 45666667799999999999999977765443322 2 33445577888888777 88889999988876431 1 1
Q ss_pred cCCC--CceeeeeEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 187 PSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
..+. +..++.++|..++..+++|...|.|..-.+.+.. ..+.+-...+.|..+.+....++++... ...+++
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~--r~~Lc~ 195 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLT--RCILCQ 195 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhh--hhheee
Confidence 2223 3455667777777789999999999988876621 1233334456777777766555554433 234455
Q ss_pred CCC
Q 014104 261 LSS 263 (430)
Q Consensus 261 ~~~ 263 (430)
.+.
T Consensus 196 tE~ 198 (726)
T KOG3621|consen 196 TEA 198 (726)
T ss_pred cch
Confidence 543
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=7.5e-05 Score=69.01 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=61.4
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
...+.|.+++++|+ +.++.|+.||+|.+||...+..... . ..-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e--ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999987 8999999999999999876644322 2 344688999999999999999999999999864
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.00 E-value=0.00087 Score=63.73 Aligned_cols=170 Identities=9% Similarity=-0.008 Sum_probs=108.4
Q ss_pred eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEe-----CCeEEEEEcCCCcccccCCCCceeeeeEEEEcC
Q 014104 129 VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI-----GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (430)
-..+.+.+.|.++.+....+........+.+++++++++.+. ..++...+......+....... .-.+..++
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkdG 288 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKAG 288 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhCC
Confidence 335678888999888888888777777799999999988332 1223333322211110000000 00111233
Q ss_pred CceEEEecCCeEEEEECCC-----CeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEEEEeCCCCce----------
Q 014104 204 PEAVVGCEDGTARVFDMYS-----RKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAISGLSSDQR---------- 266 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~vwd~~~~~~---------- 266 (430)
..... .++.|.+.|..+ .+.+..+. -......+.++|+ +++ +++..+.+|.|.|+.+.+.
T Consensus 289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 33333 356899999988 34555554 4556789999987 544 4555689999999987553
Q ss_pred --eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 267 --VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 267 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+.+.+ ........+|+++|+...+-.-|..|..||+..
T Consensus 366 ~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33443 233566789999998777888899999999875
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.99 E-value=0.0045 Score=54.65 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=117.4
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEE------
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL------ 270 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~------ 270 (430)
....+..++.|+.+| +.+++... ....... +...|..+...+. +.+++-+ |+.+.++++..-......
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 334556699999998 89999833 3333333 2334999999876 5554443 599999998765443311
Q ss_pred -------ecCCCCCeEEEE--EecCC-CEEEEEeCCCeEEEEeCCCC-----ceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 271 -------RSTDCTGIKTLC--YNPCS-RLVFAGTTAGYASCWDLRTM-----KSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 271 -------~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
.......+...+ -.+.+ ..|+++ ....|.+|..... +...++... ..+.++. |. ++.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~-~~--~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIA-FL--GNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEE-Ee--CCEEEE
Confidence 111223455444 11233 345544 4457888877652 344555543 6788888 54 566777
Q ss_pred EcCCCeEEEEEcCCCceEEEEEeccCc------------ceeeeccCCceEEEeecc--ccc-CCcccccCCCCCCCCee
Q 014104 336 GGIDGVLRVLDQNTGEVLSRCVMDIGS------------ASSSSNKVSGVIERNEGR--RLS-AGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~s~d~~v~~~~~~--~~~-~~~~~~~~~~~h~~~v~ 400 (430)
|..+ ...+.|+.++....-+...... ..+...+.+..+...+.. -+. .+...+...-.-.....
T Consensus 154 ~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred EeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchh
Confidence 7644 4888898876654433221111 111111111111110000 000 01111100000123556
Q ss_pred EEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 401 CLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 401 ~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
++++...+|+..+.+ .|-||++.+++
T Consensus 233 ~~~~~~pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 233 SVAYSSPYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred EEEEECCEEEEECCC-EEEEEECcCCc
Confidence 777778888887775 49999999885
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.014 Score=54.01 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=141.3
Q ss_pred eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec---CCeEEEEECCCCeeeEE
Q 014104 154 ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE---DGTARVFDMYSRKCSQI 228 (430)
Q Consensus 154 ~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~ 228 (430)
...+++++.+..++ ...++.|.+.|.++.........+.....+.+.+.++.+.++.. ++++.+.|..+++.+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 44578888888666 34479999999777665444444444455777777777655554 68999999999988877
Q ss_pred eecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCCCCceeE-E----EecCCCCCeEEEEEecCCCEEEEEeCC---Ce
Q 014104 229 IRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA-T----LRSTDCTGIKTLCYNPCSRLVFAGTTA---GY 298 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~~~~~~~-~----~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 298 (430)
...-..+ ..+++.|+ +.++ +-..++.|.+.|..+....+ . .. .......+.++|+|+++.+.... +.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 5543344 78899876 5444 44578999999977655543 1 11 23356778999999977765544 58
Q ss_pred EEEEeCCCCceeee-eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 299 ASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 299 i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+...|..++..... ..........+. .+|+|..+.+.. ..+.+.+-|..+............
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~-~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVA-VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCcee-ECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 99999998776654 222211345566 899999888874 458999999998888777665443
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.0035 Score=56.73 Aligned_cols=172 Identities=14% Similarity=0.172 Sum_probs=103.0
Q ss_pred CeEEEEecCCCeeEEeeecCCc--eeEEE-EecC------CCEEE-EEe---------C-CeEEEEEcCCC-----cccc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA--ASLVD-FDFD------ESKIV-GLI---------G-TRICIWRRNGL-----RSVF 186 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~------~~~l~-~~~---------~-~~i~vwd~~~~-----~~~~ 186 (430)
..|++.|..+.+.+..+..+.. +.+++ +... ..+++ |+. . |.+.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888887777765433 33222 2222 34455 432 2 88999999884 2111
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEeec-CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSS- 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~- 263 (430)
.........+.++...+..++++. ++.|.+|++...+ ....-.. ....+.++... +++++.|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEETT
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc-ccEEEEEEcccCEEEEEEEcc
Confidence 111111233577777777755544 5799999998777 3332221 22366677665 44888888878777774432
Q ss_pred CceeEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 264 DQRVATL-RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 264 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+..+..+ .......++++.|-++++.++++..+|.+.++...
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3323222 22234478899998777899999999999998875
No 348
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.95 E-value=0.0093 Score=59.64 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=74.5
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCC--------eEEEEecC-----------------CCEEEEEeCCCeEE
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP--------VTSLSLSE-----------------DQLIISGSSLGSIA 257 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~~~~~~-----------------~~~l~~~~~dg~i~ 257 (430)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. +..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 555888888999999999999998887633211 11222221 24788889999999
Q ss_pred EEeCCCCceeEEEecCCCCCeE-------------EEEEec--CCCEEEEEeC----------CCeEEEEeCCCCceeee
Q 014104 258 ISGLSSDQRVATLRSTDCTGIK-------------TLCYNP--CSRLVFAGTT----------AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~ 312 (430)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999987642 11110 111111 1345666643 68899999999999987
Q ss_pred ee
Q 014104 313 TR 314 (430)
Q Consensus 313 ~~ 314 (430)
+.
T Consensus 352 ~~ 353 (764)
T TIGR03074 352 WD 353 (764)
T ss_pred Ee
Confidence 65
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.90 E-value=0.0071 Score=55.72 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=97.7
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC--------C
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--------R 223 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--------~ 223 (430)
+..++|+++..-|+ +...|.|.+|.....+.-- ....... ...+.. ....++.-.+-|+.. |
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~--~~~~~~------~~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDL--DYNFRR------FSLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCccc--Cccccc------ccccCCCcceEEehhhCCcccccc
Confidence 45678888766666 8889999998876543211 0000000 000000 001111222334322 1
Q ss_pred -eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec-------CCCCCeEEEEEec-----CC---
Q 014104 224 -KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS-------TDCTGIKTLCYNP-----CS--- 287 (430)
Q Consensus 224 -~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~-----~~--- 287 (430)
.+...+....++|++++.++=.+++.|..+|.+.|.|+|....+..-.- .....++++.|.. |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 2334455568999999998668999999999999999998877766321 1223688888862 22
Q ss_pred CEEEEEeCCCeEEEEeCCC---Cce----eeeeecCCCceEEEEEeeCCC---------------------CeEEEEcCC
Q 014104 288 RLVFAGTTAGYASCWDLRT---MKS----LWETRISPNVVYSLQHLQNDT---------------------STLVVGGID 339 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~---~~~----~~~~~~~~~~v~~l~~~s~~~---------------------~~l~s~~~d 339 (430)
-.+++|+..|.+.+|.+.. +.. ......+.+.|..+..++.+. .+++++ .+
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se 234 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SE 234 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--S
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cc
Confidence 4788999999999998752 211 111224556666665443221 133333 45
Q ss_pred CeEEEEEcCCCceEEE
Q 014104 340 GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~ 355 (430)
..++++...+.+....
T Consensus 235 ~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHK 250 (395)
T ss_dssp SEEEEE-TT---EEEE
T ss_pred cceEEEeCCCCcccce
Confidence 6788888776665443
No 350
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.90 E-value=9.5e-06 Score=68.83 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=45.2
Q ss_pred ccCCcHHHHHHHhc-----CCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 24 IESLNGDIICMIFS-----SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~-----~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
|..||+|+++.||. .+|.++|.++++|||.|+..+.++.+|+..|.+.|
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 57899999999985 45889999999999999999999999999999887
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.89 E-value=0.011 Score=54.35 Aligned_cols=242 Identities=13% Similarity=0.052 Sum_probs=125.7
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC------------------c
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG------------------T 192 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~------------------~ 192 (430)
.+.+.++|+++++...............|+|+|+.++-..++.|.+++..++........+ .
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 4578899999977665554456677899999999999888999999988765432111111 1
Q ss_pred eeeeeEEEEcCCceEEEecC-C-----------------------------------eEEEEECCCCeeeEE--e---ec
Q 014104 193 FMKGLCMRYFDPEAVVGCED-G-----------------------------------TARVFDMYSRKCSQI--I---RM 231 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~vwd~~~~~~~~~--~---~~ 231 (430)
....+.|++++..|+....| . .+.|+|+.+++.... . ..
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence 12345566666654433221 1 223345544433211 0 11
Q ss_pred CCCCeEEEEecCC-CEEEEE--eCC---CeEEEEeCCCCceeEEEecCCCCC---eEEEEEe-cCCC-EEEEEeCCCe--
Q 014104 232 HCAPVTSLSLSED-QLIISG--SSL---GSIAISGLSSDQRVATLRSTDCTG---IKTLCYN-PCSR-LVFAGTTAGY-- 298 (430)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~--~~d---g~i~vwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~-~l~~~~~dg~-- 298 (430)
...-+..+.|.++ ..++.. ..+ ..+.+.|..++............. .....|. +++. ++.....+|.
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 2335677778755 313333 222 256777887766544443323332 2345554 5555 4445556665
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE-EEcCCC----eEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV-VGGIDG----VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~-s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
|++++...+. ...+....-.|..+..++++++.|+ ++..++ .|+.-++..+..+..+.........+++|+||.
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 5556666554 3355555566767666888877554 454422 444445442233333333222222444444443
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.01 Score=54.65 Aligned_cols=222 Identities=11% Similarity=0.083 Sum_probs=106.4
Q ss_pred hhcccCCEeEEEEeccccceeEEEecC-CeEEEEeCCCeEEEEecCCCeeEEeeecCC---------ceeEEEEec----
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPN---------AASLVDFDF---- 161 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~---- 161 (430)
..+.+|-.+..-++...++|++++.+| |+++.|..+|.+.|.|+.....+..-...+ .+..+.|..
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred cccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 345566677888888899999999976 699999999999999998877776533211 223344431
Q ss_pred -CCC---E-EEEEeCCeEEEEEcCC-CcccccCCCCceeeeeEEEEcCCceEEEecC--CeEEEEECCCCeeeEEeecCC
Q 014104 162 -DES---K-IVGLIGTRICIWRRNG-LRSVFPSREGTFMKGLCMRYFDPEAVVGCED--GTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 162 -~~~---~-l~~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~ 233 (430)
|+. . ++|+..|.+.+|.+.- ....+ ........ ....+ ..|...|.++++........-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f------~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRF------SVQFAGAT-------TNHDSPILSIIPINADTGESALATISAM 216 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-E------EEEEEEEE---------SS----EEEEEETTT--B-B-BHHHH
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCce------EEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHh
Confidence 221 1 2255556666665421 10000 00000000 00001 112223333332211100000
Q ss_pred CCeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE-----ecCCCEEEEEeCCCeEEEEeCC
Q 014104 234 APVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY-----NPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 234 ~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
. ...++ ..++....+..++++..-+.+..++... .......+.+ ...+..|++-..+|.|++|.+.
T Consensus 217 ~-----~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 217 Q-----GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp H-----GGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred h-----ccccCCCcCcEEEEEcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 0 00011 2234445578899999988887666552 2222333444 2356678888999999999999
Q ss_pred CCceeeeeecCC----CceEEEEEeeCCCCeEEEEc
Q 014104 306 TMKSLWETRISP----NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 306 ~~~~~~~~~~~~----~~v~~l~~~s~~~~~l~s~~ 337 (430)
..+.+..+.... ..+.... ++++|..++-.+
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ss-is~~Gdi~~~~g 325 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSS-ISRNGDIFYWTG 325 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-E-E-TTS-EEEE-S
T ss_pred CchHhhcccCCCccccccccccE-ECCCCCEEEEeC
Confidence 988887766532 2233333 667777665554
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.87 E-value=0.0042 Score=56.20 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=105.3
Q ss_pred CeEEEEECCCCeeeEEeecCC-CCeEEEE---ecC-----CCEEEEEeC----------CCeEEEEeCCCC-----ceeE
Q 014104 213 GTARVFDMYSRKCSQIIRMHC-APVTSLS---LSE-----DQLIISGSS----------LGSIAISGLSSD-----QRVA 268 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~-~~i~~~~---~~~-----~~~l~~~~~----------dg~i~vwd~~~~-----~~~~ 268 (430)
+.|++.|..+.+.+..+.-.. ..+.+++ +.. ..+++.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368888988887776654322 2344443 332 357777653 289999999884 2222
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
.......++|++++-- +++ |+++. .+.|.+|++...+ ....-.. ....+.++. ..+.+++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~---~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS---VFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE---EETTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEe---ccccEEEEEEcccCEEEEE
Confidence 2222256789998876 444 55543 4679999998777 4332222 223566655 3366899998888888775
Q ss_pred cCC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 347 QNT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+. +..+..+..... ...++++.+ +++.++.+..+|.|.++..
T Consensus 156 ~~~~~~~l~~va~d~~----------------------------------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 156 YDEENNKLILVARDYQ----------------------------------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EETTTE-EEEEEEESS-----------------------------------BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEccCCEEEEEEecCC----------------------------------CccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 543 333433333222 124667666 5668999999999999988
Q ss_pred cC
Q 014104 424 NY 425 (430)
Q Consensus 424 ~~ 425 (430)
..
T Consensus 202 ~~ 203 (321)
T PF03178_consen 202 NP 203 (321)
T ss_dssp -S
T ss_pred CC
Confidence 74
No 354
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.85 E-value=0.016 Score=58.04 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=131.4
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
-++.++.++.++.|.-.|..+|+.+..+......... ......+.+.+|+....... .... ..-.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~--------~~~~~cRGvay~~~p~~~~~-----~~~~--~~p~ 257 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG--------RQHQTCRGVSYYDAPAAAAG-----PAAP--AAPA 257 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc--------cccccccceEEecCCccccc-----cccc--cccc
Confidence 4678888888999999999999999887754321110 00001123333443211100 0000 0001
Q ss_pred EcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeE-------------EEEecC---CCEEEEEeC----------CC
Q 014104 201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-------------SLSLSE---DQLIISGSS----------LG 254 (430)
Q Consensus 201 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~l~~~~~----------dg 254 (430)
..+..++.++.|+.+.-.|.++|+.+..+.. .+.|. .+.-.| ++.++.|+. +|
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 1234588899999999999999998877642 22221 111112 456666643 68
Q ss_pred eEEEEeCCCCceeEEEecCCC--------C--------Ce-EEEEEecCCCEEEEEe------------------CCCeE
Q 014104 255 SIAISGLSSDQRVATLRSTDC--------T--------GI-KTLCYNPCSRLVFAGT------------------TAGYA 299 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~--------~--------~v-~~~~~~~~~~~l~~~~------------------~dg~i 299 (430)
.|+-+|.++|+.+..+..... + .+ ..++++|....++.+. ..+.|
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 899999999999888753110 0 11 2345555544444321 23457
Q ss_pred EEEeCCCCceeeeeecCCCceEE--------EEEeeC-CCC---eEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 300 SCWDLRTMKSLWETRISPNVVYS--------LQHLQN-DTS---TLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~--------l~~~s~-~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.-.|.++|+....++.....++. +.-+.. +|+ .++.++.+|.+++.|.++|+.+.....
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 77888999988877652221111 111222 553 789999999999999999998876543
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.81 E-value=0.0021 Score=46.51 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=64.1
Q ss_pred eeEEEe---c-CC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 115 VDQCRM---K-RG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 115 v~~~~~---~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
|+++++ . +| .|+.|+.|..||+|+-+ +.+..+...+.+..++-...+++.++..+|+|-+|+-... ++..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeee
Confidence 566665 2 33 89999999999999744 6777887777777777666666555899999988876332 2332
Q ss_pred CCCceeeeeEEEEcCC----ceEEEecCCeEEE
Q 014104 189 REGTFMKGLCMRYFDP----EAVVGCEDGTARV 217 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~----~l~~~~~dg~i~v 217 (430)
...+....+....... .|++|-.+|.|-+
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222222222222221 2888888887743
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.77 E-value=0.00094 Score=65.88 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=97.5
Q ss_pred ecCCeEEEEECCCCeeeEEeecCCCC-eEEEEecC------CCEEEEEeCCCeEEEEeCCCCc--eeEE-E-ecCCCCCe
Q 014104 210 CEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSE------DQLIISGSSLGSIAISGLSSDQ--RVAT-L-RSTDCTGI 278 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~--~~~~-~-~~~~~~~v 278 (430)
.....++-.|++.|+.+...+.|... |..++-.. +...+.|-.+..+..||.|-.. .+.. . .-......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999877654 66665431 2356677888999999998532 2211 1 11133467
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..+. .+.||++|++.+ +..+.++++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD-vt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID-VTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE-ecCCCcEEEEee-cceEEEEEEe
Confidence 888877666 689999999999999543333344666678999999 999999988776 5578787763
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.026 Score=50.11 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=105.6
Q ss_pred EecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC----
Q 014104 159 FDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH---- 232 (430)
Q Consensus 159 ~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---- 232 (430)
|.++...|+ --..+.|.-|+..+++.......+... ..........+.++..| +.+++.+++..+..+..-
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~--~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFS--SGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcc--cceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCCC
Confidence 334444333 334566777777655432222222221 11122223244444443 556666655543222111
Q ss_pred -CCCeEEEEecCCCEEEEEeCC------------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCe
Q 014104 233 -CAPVTSLSLSEDQLIISGSSL------------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGY 298 (430)
Q Consensus 233 -~~~i~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 298 (430)
....+.+...|+..+..++.. |.++..|. .+..++.+.. +-..-+.++||||++.|+.+.. .+.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEEEeCCCCe
Confidence 123456666665444444433 33444443 4555554443 3446678999999988876655 477
Q ss_pred EEEEeCCC--Cce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCC-eEEEEEcCCCceEEEEEecc
Q 014104 299 ASCWDLRT--MKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDG-VLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 299 i~i~d~~~--~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~ 360 (430)
|.-|++.. +.. ...+....+..-.++ ...+|.+.+++-.+| .|.+|+.+ |+++..+....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceE-EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 88887752 111 112222334555565 777888775555554 89999988 99999988763
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.74 E-value=0.022 Score=48.55 Aligned_cols=179 Identities=12% Similarity=0.056 Sum_probs=115.0
Q ss_pred eeEEEe-cCC-eEEEEeCCC--eEEEEecCCCeeEEeeecCCceeE--EEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 115 VDQCRM-KRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 115 v~~~~~-~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
...+.| .++ ++-+.+.-| .|+.+|+.+++.......+..... +++..|.-+.+.-.++...+||.++.+.+-..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 346788 777 556666655 799999999999888877655443 34433322233888999999999987643222
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC-----CCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
.-. .....++.++..++.......++.+|..+.+..+.+... -..++-+.+.++...|-.-....|...|..+
T Consensus 127 ~y~--~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 127 PYP--GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp E-S--SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred ecC--CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 111 133556677888888877889999999888777666532 1245667887776666667778889999999
Q ss_pred CceeEEEecC--------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 264 DQRVATLRST--------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 264 ~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
|+....+... ...-...++++|..+.|+..+.
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 9988766310 1235789999998776665543
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.71 E-value=0.01 Score=59.85 Aligned_cols=194 Identities=10% Similarity=-0.022 Sum_probs=106.4
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.+..+.|..++..++ +...|.|.+-|.++......+.....+...+|+++...++..+..+++.+-+ .+-.++....-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L 148 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPL 148 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcccc
Confidence 455566666776666 8999999999988877655555555567788888888887777777776644 23333322211
Q ss_pred C-----CCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEE-----eCCCeEE
Q 014104 232 H-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAG-----TTAGYAS 300 (430)
Q Consensus 232 ~-----~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~ 300 (430)
+ .+....+-|-....=+-|+ .|.....+.... +...... ....=+.+.|--||+++++. .....|+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~--~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIE--QDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccccceecccccceeeecc-hhhhcccccccccccccchh--hccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 1 1122223332111111111 111111111000 0000011 12234568999999999873 2237899
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVL 353 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~ 353 (430)
+||.. |.+-..-....+.-.+++ |-|.|..+++-. .|+.|.+|.-+ |-.-
T Consensus 226 V~drE-g~Lns~se~~~~l~~~Ls-WkPsgs~iA~iq~~~sd~~IvffErN-GL~h 278 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLS-WKPSGSLIAAIQCKTSDSDIVFFERN-GLRH 278 (1265)
T ss_pred Eeccc-chhhcccCccccccccee-ecCCCCeEeeeeecCCCCcEEEEecC-Cccc
Confidence 99987 433222222223334666 889999888754 55678888743 5433
No 360
>PHA02713 hypothetical protein; Provisional
Probab=97.69 E-value=0.0056 Score=59.60 Aligned_cols=182 Identities=8% Similarity=0.004 Sum_probs=92.0
Q ss_pred ceEEEecC------CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeE--E
Q 014104 205 EAVVGCED------GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSSLG-----SIAISGLSSDQRVA--T 269 (430)
Q Consensus 205 ~l~~~~~d------g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~--~ 269 (430)
.+++|+.+ ..+..||..+++-. ..+...... .+++...+.+.+.|+.++ ++..||..+.+-.. .
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 35666643 35778888776421 111111111 233333667777777653 48889988764322 1
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCC-----------------------eEEEEeCCCCcee--eeeecCCCceEEEE
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAG-----------------------YASCWDLRTMKSL--WETRISPNVVYSLQ 324 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~~~~~~~~~v~~l~ 324 (430)
+.. .......+.+ +|+..+.|+.++ .+..||..+.+-. ..+...... .+++
T Consensus 385 mp~-~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~ 460 (557)
T PHA02713 385 MPI-ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV 460 (557)
T ss_pred CCc-ccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEE
Confidence 111 0111222222 677777777542 4777887765322 222111111 1122
Q ss_pred EeeCCCCeEEEEcCCC------eEEEEEcCC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 325 HLQNDTSTLVVGGIDG------VLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
.-+++..+.|+.++ .+..||..+ .+-...-. + .....
T Consensus 461 --~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---------------------------------m-~~~r~ 504 (557)
T PHA02713 461 --SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---------------------------------T-ESRLS 504 (557)
T ss_pred --EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---------------------------------c-Ccccc
Confidence 22466556666432 345566654 22111000 0 01122
Q ss_pred CeeEEEEcCeEEEEeeCCC--eEEEEEecCCC
Q 014104 398 PITCLAVGMKKVVTTHNSK--YIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~~~~~l~t~~~Dg--~v~vw~~~~~~ 427 (430)
....+.++++..++||.|| ++-.||..+++
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 4445666899999999998 77778877654
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.67 E-value=0.032 Score=52.25 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=107.7
Q ss_pred EEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
++.+....-....+.+ |+|.++....||.-.|+.....+.... +......|...+++.+-...+.|.++.--..+
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3444445556788888 566555557788888888554444332 23445778886666556668889996332222
Q ss_pred ccccC-CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 184 SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
..... .+.....++. |..|...+ ++.|.+||.++++.+..+... +|..+.|+++ ++++..+. ..+.+++.
T Consensus 101 ~~k~i~~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKY 172 (443)
T ss_dssp TT-----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcCCcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEe
Confidence 21111 1111111121 44455544 458999999999999998733 4899999976 67777664 46777665
Q ss_pred CCC-----------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 262 SSD-----------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 262 ~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
... .....+.. ....|.+..|..+ .++-.+.. .++- +..|+. ..+..-..+++=+. +.|..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllg-y~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLG-YLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEE-EETTT
T ss_pred cchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEE-EEccC
Confidence 432 02222221 1347888888644 33333333 5655 333322 12222223444444 55655
Q ss_pred CeEEEEcCCCeEEEEEcC
Q 014104 331 STLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~ 348 (430)
+.+.....|+.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 667777777777766654
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.0024 Score=63.10 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=68.7
Q ss_pred eEEEecCCeEEEEECCCC--eeeEE-ee--cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 206 AVVGCEDGTARVFDMYSR--KCSQI-IR--MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~~~~~-~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.+.|-.+..+..||.+-. +++.. .+ .......|++-+.+.+||.|+.+|.|++||- .|....+.-.+...+|.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIG 623 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeE
Confidence 566777778888887743 22211 10 1334677888877789999999999999994 444444433336779999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeC
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
|..+.||+++++.+. ..+.+++.
T Consensus 624 iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEeec-ceEEEEEE
Confidence 999999999887665 45777775
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.059 Score=50.37 Aligned_cols=185 Identities=14% Similarity=0.060 Sum_probs=100.2
Q ss_pred eEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC----CCCceeee--eEEEEcCCc
Q 014104 133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS----REGTFMKG--LCMRYFDPE 205 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~--~~~~~~~~~ 205 (430)
.|.||+.. |+.+..+.-. +.+..+.|+.+...++...+|.++++|+.+.. .+.. ....+... ......+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 59999865 4566665543 56666888887777779999999999997555 1111 11111111 111222233
Q ss_pred eEEEecCCeEEEEECCCCe-eeEEeecCCC---------CeEE-EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCEDGTARVFDMYSRK-CSQIIRMHCA---------PVTS-LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~---------~i~~-~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
++.-..++.+.+.+-.... ..+.+..-.. .... ..++.+ ...+....++.+.+.+-...+. +.
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-- 214 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-- 214 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--
Confidence 5555556666555322211 1111110000 0000 112211 2333334444555333222111 22
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-CCceEEEE
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-PNVVYSLQ 324 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~l~ 324 (430)
..+++..|++||+|+++|.-..+|.+.+.+..-.+.+.++... ......+.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 2358999999999999999999999999887766666665544 23455665
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00038 Score=64.80 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK-TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
..|.-+.|+|. +++|.+..+|.|.+..+. -+.+.++.- +...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45778899987 899999999999999987 677788875 444566 99999999999999999999999999987765
Q ss_pred ee-ecCCCceEEEEEee
Q 014104 312 ET-RISPNVVYSLQHLQ 327 (430)
Q Consensus 312 ~~-~~~~~~v~~l~~~s 327 (430)
.. ..-...|.++- |+
T Consensus 99 ~~~~s~e~~is~~~-w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGI-WD 114 (665)
T ss_pred ccccccccchheee-cc
Confidence 52 12234555554 54
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.61 E-value=2e-05 Score=73.00 Aligned_cols=138 Identities=21% Similarity=0.314 Sum_probs=95.0
Q ss_pred eEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecC-C-CEEEEEe----CCCeEEEEeCCCC--cee--EEEecC
Q 014104 206 AVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSE-D-QLIISGS----SLGSIAISGLSSD--QRV--ATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~-~-~~l~~~~----~dg~i~vwd~~~~--~~~--~~~~~~ 273 (430)
+++|..+|.|-+-..+...- -....++..+.++++|++ + +.+++|- .|..+.+||+.++ .+. ..|.+.
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~ 152 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS 152 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence 78888999999887764321 234456778899999995 3 6777763 4568999999876 221 122221
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEc
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~ 347 (430)
......+++|..+.+++.+|.....+.++|++... ....+ .+..+..+. ++| .+.++++.. ||.|-+||.
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t-Vdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT-VDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce-ecCCCCCceeccc-cCceeeccc
Confidence 33356688898888999999999999999998421 11111 223445555 667 667777665 999999994
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.60 E-value=0.035 Score=47.32 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=97.8
Q ss_pred eEEEecCC--eEEEEECCCCeeeEEeecCC-CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 206 AVVGCEDG--TARVFDMYSRKCSQIIRMHC-APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 206 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
+-+.+.-| .|+.+|+.+++......-.. --=-.++...+.+....-.++...+||..+.+.+.++.- .+.=..++
T Consensus 59 yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt 136 (264)
T PF05096_consen 59 YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT 136 (264)
T ss_dssp EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE
T ss_pred EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec--CCcceEEE
Confidence 45555554 69999999998776654322 222455665666666777899999999999999998874 34445555
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.+++.|+.......++.+|..+.+...++.... ..++.+.+. +|...|-.=....|..-|..+|+.+..+.
T Consensus 137 --~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 137 --SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp --ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred --cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 377777777777789999998887776655432 346667733 56666666667788999999999988886
Q ss_pred e
Q 014104 358 M 358 (430)
Q Consensus 358 ~ 358 (430)
.
T Consensus 213 l 213 (264)
T PF05096_consen 213 L 213 (264)
T ss_dssp -
T ss_pred h
Confidence 4
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00069 Score=63.14 Aligned_cols=79 Identities=30% Similarity=0.373 Sum_probs=70.4
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE-EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
..+.-+.|+|.-.++|++..+|.|.++.+. .+.+.++..|...++ +++ |.|||+.|+.|-.||+|++.|+.+|..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~-W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLC-WRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeee-ecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 368889999999999999999999999888 778888886766666 898 99999999999999999999999998887
Q ss_pred EE
Q 014104 355 RC 356 (430)
Q Consensus 355 ~~ 356 (430)
..
T Consensus 99 ~~ 100 (665)
T KOG4640|consen 99 SF 100 (665)
T ss_pred cc
Confidence 74
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00037 Score=39.81 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=33.1
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+++..+..|...|.++. +.+++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVA-FSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEE-ECCCCCEEEEecCCCeEEEcC
Confidence 45566778888999999 888889999999999999996
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.096 Score=48.54 Aligned_cols=236 Identities=12% Similarity=0.131 Sum_probs=143.6
Q ss_pred EEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCc-eEEE
Q 014104 134 MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPE-AVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~ 209 (430)
+.+++..+.+....+........+...+++..+. .. ....+...+............+ .......+...++. .++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence 6677777766666666555666677888886655 22 2224444444422111111111 22223444445554 4555
Q ss_pred ecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC---CCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 210 CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
..++.|.+.|..+.+.......-. ....++++++ +.++.+.. ++++.+.|..+++....... ...+ ..++++|
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p 169 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDP 169 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECC
Confidence 556899999988777776665322 4567888865 45555543 78999999999998888654 2223 8999999
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCceee-e----eecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEE-
Q 014104 286 CSRLVFAGT-TAGYASCWDLRTMKSLW-E----TRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSR- 355 (430)
Q Consensus 286 ~~~~l~~~~-~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~- 355 (430)
+|+.++... .++.|.+.|........ . .... ..-..+. ++|+|.++...... +.+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 999776554 78899999987665542 1 1111 2334555 88999977655433 5899999988777665
Q ss_pred EEeccCcceeeeccCCceE
Q 014104 356 CVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v 374 (430)
..........+...++|..
T Consensus 248 ~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred cccccCCCCceeECCCCCE
Confidence 2222212334445555543
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.43 E-value=0.00058 Score=38.92 Aligned_cols=38 Identities=16% Similarity=0.456 Sum_probs=32.3
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
+.+..+.. +...|.++.|+|++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556655 777999999999999999999999999996
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.00029 Score=57.39 Aligned_cols=142 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
.+...+.||.|.-++++..+.-..-...+.... ..-.-+..+++|+.+|.|++|.... +.....+......|-++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 455567788888888775432211111011121 1122346799999999999998763 222222222223343332
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
....++.+..+++.||.|+.|++.-++.+.....|.. .++.....
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----------------------------------~~~e~~iv 153 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----------------------------------ESGEELIV 153 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccC-----------------------------------CCcceeEE
Confidence 1223445789999999999999987776665544331 12222222
Q ss_pred --cCeEEEEe--eCCCeEEEEEecC
Q 014104 405 --GMKKVVTT--HNSKYIRLWKFNY 425 (430)
Q Consensus 405 --~~~~l~t~--~~Dg~v~vw~~~~ 425 (430)
.++.++.+ |.|..++.|++..
T Consensus 154 v~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 154 VGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ecCCceEEeeccccchhhhhcchhh
Confidence 45667777 8888888888764
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.00031 Score=57.20 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=79.8
Q ss_pred eEEEecCCeEEEEECCCCeee-EEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCS-QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~ 283 (430)
+...+.+|.|.-++++..+.- +.-..+...-..+. -+..++.|+.+|.|.+|+..- +.....+..........+.-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 555667788887776543221 11111111111111 236789999999999998762 11111111111212222333
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEE--cCCCeEEEEEcC
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVG--GIDGVLRVLDQN 348 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~--~~dg~i~vwd~~ 348 (430)
..++.+..+++.||.|+.|++..++.+.....|. .++..+. .+..+++++.+ |.|..++.|++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i-vv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI-VVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE-EecCCceEEeeccccchhhhhcchh
Confidence 3445678899999999999999888877666665 4444444 44455555555 666666666665
No 373
>PHA02713 hypothetical protein; Provisional
Probab=97.31 E-value=0.032 Score=54.46 Aligned_cols=218 Identities=10% Similarity=0.047 Sum_probs=107.2
Q ss_pred eEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeC------CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcC
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIG------TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (430)
.+..||..+++....-..+... .......++..++ |+.+ ..+..||+.+..-. .................+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 5678888876543322222111 1122233555444 5532 34778888776421 111111111112223344
Q ss_pred CceEEEecCC-----eEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCC-----------------------
Q 014104 204 PEAVVGCEDG-----TARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL----------------------- 253 (430)
Q Consensus 204 ~~l~~~~~dg-----~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d----------------------- 253 (430)
...+.|+.++ ++..||..+.+- +..+....... +++...+.+.+.|+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 4466777653 488899876532 11222111111 2223356666667654
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEeCCC-Cc--eeeeeecCCCceEEEE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA------GYASCWDLRT-MK--SLWETRISPNVVYSLQ 324 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~~~~v~~l~ 324 (430)
..+..||..+.+-...-.......-.+++ .-+|+..+.|+.+ ..+..||..+ .+ .+..+..........+
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 25778888776542211110111111222 2256766777654 2467899886 33 2333333222222222
Q ss_pred EeeCCCCeEEEEcCCC--eEEEEEcCCCceEEE
Q 014104 325 HLQNDTSTLVVGGIDG--VLRVLDQNTGEVLSR 355 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~ 355 (430)
-+|+..++|+.+| .+-.||..+.+-...
T Consensus 511 ---~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 511 ---HDNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred ---ECCEEEEEeeecceeehhhcCcccccccch
Confidence 3678888998888 777888876654433
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.027 Score=52.55 Aligned_cols=182 Identities=16% Similarity=0.068 Sum_probs=103.3
Q ss_pred ceeEEEEecCCCEEE-E---EeC-CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCe--EEEEECCCCe
Q 014104 153 AASLVDFDFDESKIV-G---LIG-TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGT--ARVFDMYSRK 224 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~---~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~--i~vwd~~~~~ 224 (430)
....-.|++++..++ . ... ..+.++++++++.............-.+++++.. +++...||. |.+.|+.+++
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 344467888888766 2 222 4599999998874333222222334667777777 555666665 5666887666
Q ss_pred eeEEeecCCCCeEEEEecCC-CEEEEE-eCCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCe-
Q 014104 225 CSQIIRMHCAPVTSLSLSED-QLIISG-SSLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGY- 298 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~- 298 (430)
.. .+..-.+.-..=.|+|+ +.++-. +..| .|.+.|...+... .+.. ..+.-..-.++|+|++++..+. +|.
T Consensus 274 ~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~-~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 274 LP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTF-SGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred ce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeec-cCCCCcCccCCCCCCEEEEEeccCCce
Confidence 33 34433333345567775 555544 4445 4677777665543 3322 2222226688999999886654 344
Q ss_pred -EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 299 -ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 299 -i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
|.+.|+.++..+..+. +......-. +.+++..++..+..
T Consensus 351 ~i~~~~~~~~~~~~~lt-~~~~~e~ps-~~~ng~~i~~~s~~ 390 (425)
T COG0823 351 DIDKNDLASGGKIRILT-STYLNESPS-WAPNGRMIMFSSGQ 390 (425)
T ss_pred eeEEeccCCCCcEEEcc-ccccCCCCC-cCCCCceEEEeccC
Confidence 7777776655433332 222222333 67788777655433
No 375
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.038 Score=51.58 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCe--EEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTR--ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
..+.++|+++++.............-+|+|||+.|+ ...++. |.+.|+.++..............-.+.+++..++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEE
Confidence 458899999887776666666667789999999988 444554 6667777766322222222233456777777755
Q ss_pred EE-ecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CCe--EEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 VG-CEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 ~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
-. +..|. |.++|.+.+.. ..+....+.-..-.|+|+ ++++..+. +|. |.+.|+.++...+.+. .......
T Consensus 298 f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ 374 (425)
T COG0823 298 FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNES 374 (425)
T ss_pred EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCC
Confidence 44 44444 66667766554 333333333336677776 66665553 344 7777777666555554 2334445
Q ss_pred EEEecCCCEEEEEe
Q 014104 281 LCYNPCSRLVFAGT 294 (430)
Q Consensus 281 ~~~~~~~~~l~~~~ 294 (430)
-.+.|+|+.+...+
T Consensus 375 ps~~~ng~~i~~~s 388 (425)
T COG0823 375 PSWAPNGRMIMFSS 388 (425)
T ss_pred CCcCCCCceEEEec
Confidence 56777887666443
No 376
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.23 E-value=0.15 Score=46.15 Aligned_cols=233 Identities=11% Similarity=0.017 Sum_probs=108.1
Q ss_pred CEeEEEEeccccceeEEEe------cCC--eEEEEeCCC--eEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EE
Q 014104 102 RIDIDQWKAHSVGVDQCRM------KRG--LILTGVGDK--VMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GL 169 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~------~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~ 169 (430)
+.++..|..+...-..+-| ++| +|+++..|| .+.+-|+.+++..+.-.+++. .....++++.+.++ ..
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE
Confidence 3455666555444443433 456 555565565 556668899888776665433 22467778888877 66
Q ss_pred eCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcC-CceEEEe-----------------------cCCeEEEEECCCC
Q 014104 170 IGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFD-PEAVVGC-----------------------EDGTARVFDMYSR 223 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~~-----------------------~dg~i~vwd~~~~ 223 (430)
....+...|+++.+. +......-. ....+..+. ...+++. ....|.-.|+.+|
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWK-GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEE-EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CCCeEEEEECCcCcEEEEEECCcccc-cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 677899999998764 333333332 222332222 2222221 1335566688887
Q ss_pred eeeEEeecCCCCeEEEEecCC--CEEEEEeC---CC-eEEEEeCCC-CceeEEEecC-CCCCeEEEEEecCCCEEEEE--
Q 014104 224 KCSQIIRMHCAPVTSLSLSED--QLIISGSS---LG-SIAISGLSS-DQRVATLRST-DCTGIKTLCYNPCSRLVFAG-- 293 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~---dg-~i~vwd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-- 293 (430)
+....+. ....+..+.++|. ..|+-|-+ +. .-+||-+++ +...+.+... ....+..=-|.|+|..+.--
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 7654444 4567888999975 45555532 22 235665543 3333443321 12245555688999866632
Q ss_pred ---eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 294 ---TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 294 ---~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
+.+..|.-+|+.+++....... ....-+. .++||++++-=+.|
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~-ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFM-SSPDGKLFVGDGGD 303 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEEEE---SEEEEE-E-TTSSEEEEEE--
T ss_pred cCCCCceEEEeeCCCCCCceEEEeC--CceeeeE-EcCCCCEEEecCCC
Confidence 2244688888888765432222 1233443 57888877654443
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.14 Score=45.49 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=117.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cc-cCCCC---ceeeee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VF-PSREG---TFMKGL 197 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~-~~~~~---~~~~~~ 197 (430)
++.+--..+.|.-|+..+++. ..+..+........-..+..|+++.. .+.+++.+++.. .+ ....+ ......
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc-ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 455556677888888876533 34444444444433334444443333 334444443322 11 11111 111112
Q ss_pred EEEEcCCceEEEecC------------CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCC
Q 014104 198 CMRYFDPEAVVGCED------------GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSS 263 (430)
Q Consensus 198 ~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~ 263 (430)
.+.+.+. +..+... |.++.+|. .+..++.+..+-..-+.++|+|+ +.++.+ +..+.|.-|++..
T Consensus 117 ~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 117 VVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred eEcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 2222222 3333322 44555554 45566666555556678999987 455555 4457888887752
Q ss_pred --C----ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 264 --D----QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 264 --~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+ +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++++.++......+++++|-.|+.+.|+..
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 1 111122222445677888888998876555554 89999999 999998887767788888666766666554
Q ss_pred c
Q 014104 337 G 337 (430)
Q Consensus 337 ~ 337 (430)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 4
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.21 E-value=0.069 Score=52.12 Aligned_cols=222 Identities=13% Similarity=0.074 Sum_probs=115.6
Q ss_pred eEEEEeCC------CeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeC------CeEEEEEcCCCcccc-cC
Q 014104 124 LILTGVGD------KVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIG------TRICIWRRNGLRSVF-PS 188 (430)
Q Consensus 124 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------~~i~vwd~~~~~~~~-~~ 188 (430)
.++.||.+ ..+..+|..+++.......+. ....+++..+.-+++|+.+ ..+..||..+.+-.. ..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~ 366 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP 366 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC
Confidence 66777776 468889988875544333332 2222333333223336666 346778887766221 11
Q ss_pred CCCceeeeeEEEE-cCCceEEEecCCe-----EEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCC------C
Q 014104 189 REGTFMKGLCMRY-FDPEAVVGCEDGT-----ARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL------G 254 (430)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~l~~~~~dg~-----i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d------g 254 (430)
..... ....+.. .+...++|+.||. +..||..+.+- +..+..... -.+++...+.+.++|+.+ .
T Consensus 367 M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 367 MNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEECCEEEEEcCcCCCccccc
Confidence 11111 1233333 4444788888864 67788766542 211211111 122333356777777754 3
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeee--eecCCCceEEEEEee
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWE--TRISPNVVYSLQHLQ 327 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~s 327 (430)
++..||..+++-...-.......-..++.- ++...+.|+.|+ +|..||..+.+-... .......+... .
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~---~ 520 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV---V 520 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE---E
Confidence 678889887665332221111111223332 677888888776 378899887654322 22222222222 2
Q ss_pred CCCCeEEEEcCCC-----eEEEEEcCCCc
Q 014104 328 NDTSTLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 328 ~~~~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
-++...++|+.|| +|-.||..+.+
T Consensus 521 ~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 521 LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3567777888775 46666666543
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00077 Score=64.96 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=85.3
Q ss_pred EEEecCC-CEEEEEe----CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 238 SLSLSED-QLIISGS----SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
-..|+|. .+++.++ ..|+|-||- .+|++-+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3567775 5666664 457888875 5677655444 233577899999988899998899999999887776666
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...|..+|..+. ||++|..|+++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~-wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLD-WSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEE-ecCCCCeEEEcCCCceeEEEEee
Confidence 778999999999 99999999999999999999765
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.038 Score=46.99 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred EEEEecCC--CEEEEEeCCCe-EEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeC-----CCeEEEEeCCCC
Q 014104 237 TSLSLSED--QLIISGSSLGS-IAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTT-----AGYASCWDLRTM 307 (430)
Q Consensus 237 ~~~~~~~~--~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 307 (430)
..++++|. .-++.+-.-|+ ..++|....+...++...... -.-.=.|||||.+|+..-. .|.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35666654 34555555554 568888877776665431111 1112368999999987643 377999999853
Q ss_pred -ceeeeeecCCCceEEEEEeeCCCCeEEEEcC------------------CCeEEEEEcCCCceEEEEEec----cCcce
Q 014104 308 -KSLWETRISPNVVYSLQHLQNDTSTLVVGGI------------------DGVLRVLDQNTGEVLSRCVMD----IGSAS 364 (430)
Q Consensus 308 -~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------------------dg~i~vwd~~~~~~~~~~~~~----~~~~~ 364 (430)
+.+.++..|.-..-.+. +.+||+.|+.+.. .-++.+-|..+|.++...... ...+.
T Consensus 151 fqrvgE~~t~GiGpHev~-lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVT-LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred cceecccccCCcCcceeE-EecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 55667777765566676 8899998877643 123455555566655444332 22445
Q ss_pred eeeccCCceEEEeeccccc------------CCcccccCCC------CCCCCeeEEEEc--CeE-EEEeeCCCeEEEEEe
Q 014104 365 SSSNKVSGVIERNEGRRLS------------AGCCIDRIPK------TIRPPITCLAVG--MKK-VVTTHNSKYIRLWKF 423 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~------------~~~~~~~~~~------~h~~~v~~v~~~--~~~-l~t~~~Dg~v~vw~~ 423 (430)
-+.-..||++.....+.-+ .+..+..+.. .....|-+|+.+ ... .+|+-.-+..-+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 5667788888633222111 1111111111 112346677774 344 455556667889999
Q ss_pred cCCC
Q 014104 424 NYSD 427 (430)
Q Consensus 424 ~~~~ 427 (430)
++|+
T Consensus 310 ~tG~ 313 (366)
T COG3490 310 ATGA 313 (366)
T ss_pred CCCc
Confidence 9885
No 381
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.12 E-value=0.14 Score=43.82 Aligned_cols=195 Identities=11% Similarity=0.087 Sum_probs=110.7
Q ss_pred EEEEeccccceeEEEe-cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEE-eCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGL-IGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~~~i~vwd 178 (430)
.+.+.+-.+.+..++| ++ + ++++....+.|...+.+ |+.+..+... +....+++.-++.+++.. .++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3467777778999999 44 4 66667778888888864 7888887754 456668887777776655 378898888
Q ss_pred cCCCcc----------cccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCC---CeeeEEe--------ecCCCC
Q 014104 179 RNGLRS----------VFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQII--------RMHCAP 235 (430)
Q Consensus 179 ~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~--------~~~~~~ 235 (430)
+..... .+.. ........+++.+.+..++++-+.....++.+.. ...+... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 843211 0111 1223356677777777788887777766776543 2111111 123346
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNPCSRLVFAGTTAGYASCW 302 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 302 (430)
+.+++++|. ++++....+..+..+| .+|+.+..+.-.. -.+.-.|+|+++|++.++ ++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 788999974 6777788889999999 6788766654311 136889999999975555 455555554
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.002 Score=63.95 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE
Q 014104 244 DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL 323 (430)
Q Consensus 244 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l 323 (430)
+..++.|++.|.+...|....-.-..-.....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+..++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 35688899999999999865311001111245699999999999999999999999999999999998888776555554
Q ss_pred EE--eeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QH--LQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~--~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
-+ +..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 31 3445567888877776 55543
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.10 E-value=0.099 Score=51.03 Aligned_cols=214 Identities=13% Similarity=0.091 Sum_probs=111.0
Q ss_pred CeEEEEEcCCCccccc-CCCCceeeeeEEEEc-CCceEEEecC------CeEEEEECCCCeeeE--EeecCCCCeEEEEe
Q 014104 172 TRICIWRRNGLRSVFP-SREGTFMKGLCMRYF-DPEAVVGCED------GTARVFDMYSRKCSQ--IIRMHCAPVTSLSL 241 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~ 241 (430)
..+..+|..+++-... ....... ..+.... +...++|+.| .++..||..+++=.. .+...... ..++.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEE
Confidence 4577788877642211 1111111 2333333 3347788888 457788887765221 11111111 23333
Q ss_pred cCCCEEEEEeCCC-----eEEEEeCCCCceeEEEecCCCCCeEEEEE-ecCCCEEEEEeCCC------eEEEEeCCCCce
Q 014104 242 SEDQLIISGSSLG-----SIAISGLSSDQRVATLRSTDCTGIKTLCY-NPCSRLVFAGTTAG------YASCWDLRTMKS 309 (430)
Q Consensus 242 ~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg------~i~i~d~~~~~~ 309 (430)
..+.+.++|+.|| ++..||..+.+--..-. .......... .-+|...++|+.++ ++..||..+++-
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 3677888888886 57888887655322111 1111222211 12677777887554 578888887643
Q ss_pred ee--eeecCCCceEEEEEeeCCCCeEEEEcCCC-----eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 310 LW--ETRISPNVVYSLQHLQNDTSTLVVGGIDG-----VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 310 ~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.. .+....... .++ .-++...+.||.|+ +|..||..+.+-...-.
T Consensus 457 ~~~~~M~~~R~~~-g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~------------------------- 508 (571)
T KOG4441|consen 457 TLIAPMNTRRSGF-GVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP------------------------- 508 (571)
T ss_pred eecCCcccccccc-eEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEccc-------------------------
Confidence 22 221111111 122 23677778888776 25556665443322210
Q ss_pred cCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCC-----eEEEEEecCC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSK-----YIRLWKFNYS 426 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg-----~v~vw~~~~~ 426 (430)
.......+-.+..++...+.||.|| +|..||..++
T Consensus 509 ---------m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 509 ---------MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ---------CccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 0112234455666788888888886 5666665554
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0033 Score=62.41 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 286 CSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.+..++.|+..|.+-..|+... .+...-..-.++|++++ |+.+|..++.|-.+|.|.+||+.+++.++.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsva-fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVA-FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeE-ecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567889999999999998753 22223333458999999 999999999999999999999999999998887655
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.01 Score=54.58 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=94.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCC--------EEEEEeCCeEEEEEcCCCcc-c---ccCCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES--------KIVGLIGTRICIWRRNGLRS-V---FPSREG 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~i~vwd~~~~~~-~---~~~~~~ 191 (430)
.+.++.....++--|++.|+.+.+.+.+..+..+.+.|+.+ .|+|-.++.|.-||+.-... . ...++-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45556666677888999999999999887888888888654 47788999999999873221 1 111111
Q ss_pred -ceeeeeEEEEc-CCceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 192 -TFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 192 -~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
......|+... +..+++|+.+|.|++||- .+. .-..+++-..+|..+..+.+ .+++ |+-+..+.+.|+.
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEEe
Confidence 11122344433 445999999999999996 443 33456777889999999854 5544 4456777777754
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.014 Score=53.70 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=96.2
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--------CEEEEEeCCCeEEEEeCCCCce--eEEEec---
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--------QLIISGSSLGSIAISGLSSDQR--VATLRS--- 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~~--~~~~~~--- 272 (430)
+.++.....++-.|++.|+.+...+.+.. |+-+.+.|+ ..-+.|-.|..|.-||.+-... +...++
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45566667788889999999998887766 666777653 1234566788999999883222 111111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.......|.+-..+| ++++|+.+|.|++||--..+....+.+-..+|..+. .+.+|++|++.+ +..+.+-++.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVd-vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVD-VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEE-eeccCcEEEEec-ccEEEEEEEe
Confidence 012245666665554 789999999999999743333445677778999999 999999887665 5567776654
No 387
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.05 E-value=0.00033 Score=65.29 Aligned_cols=176 Identities=16% Similarity=0.218 Sum_probs=103.5
Q ss_pred EEeCCeEEEEEcCCCccc-ccCCCCceeee--eEEEEcCCc-eEEEe----cCCeEEEEECCCC--eee--EEeec-CCC
Q 014104 168 GLIGTRICIWRRNGLRSV-FPSREGTFMKG--LCMRYFDPE-AVVGC----EDGTARVFDMYSR--KCS--QIIRM-HCA 234 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~--~~~~~~~~~-l~~~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~ 234 (430)
|..+|.|.+-.+....-. ....++....+ .+|...+.. |++|- .|..+.|||+.++ .+. ..+.+ ...
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~ 155 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLD 155 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccccc
Confidence 777888888777654321 12222222222 333333323 45442 3567999999876 211 11221 223
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEe-CCCC-ce
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWD-LRTM-KS 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~-~~ 309 (430)
...+++|..+ .++++|.....+.++|++... ....+ ....+..+.++| .++++++- .||.|.+|| .++- .+
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENP 231 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCceecc-ccCceeeccchhhhccH
Confidence 4557788755 688888888899999998322 22222 233577788888 66777665 499999999 4432 23
Q ss_pred eeeeecCC----CceEEEEEeeCCC-CeEEEEc-CCCeEEEEEcC
Q 014104 310 LWETRISP----NVVYSLQHLQNDT-STLVVGG-IDGVLRVLDQN 348 (430)
Q Consensus 310 ~~~~~~~~----~~v~~l~~~s~~~-~~l~s~~-~dg~i~vwd~~ 348 (430)
+..+.... ..+..++ +.|.. ..+++.+ ..++|+++|+.
T Consensus 232 l~~i~~~~N~~~~~l~~~a-ycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALA-YCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHHhhCCCCcccceeeEE-eccCCcchhhhhccCcceEEEeccc
Confidence 33222222 3488888 66643 3556665 44789999886
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.17 Score=43.23 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=126.0
Q ss_pred ceeEEEe--cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCE-EE-EEeCCe-EEEEEcCCCcccc
Q 014104 114 GVDQCRM--KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLIGTR-ICIWRRNGLRSVF 186 (430)
Q Consensus 114 ~v~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~-i~vwd~~~~~~~~ 186 (430)
+|..-+| .+| .+++.+.+| +++.....+....-+.++|.-.. ++ +..-|+ ..++|.++.+...
T Consensus 36 avfasaf~~~dgs~g~a~~~eaG----------k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv 105 (366)
T COG3490 36 AVFASAFDARDGSFGAATLSEAG----------KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV 105 (366)
T ss_pred chheeeeeccCCceeEEEEccCC----------ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE
Confidence 4444444 345 455555554 44444444444455667764433 33 445454 5678888766432
Q ss_pred cC---CCCceeeeeEEEEcCCceEEEec-----CCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeC----
Q 014104 187 PS---REGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS---- 252 (430)
Q Consensus 187 ~~---~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---- 252 (430)
.. ...|...--++++++..|+..-. .|.|-+||.+.+ +.+.++..|.-....+.+.++ ..++.+..
T Consensus 106 ~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 106 TLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred EEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 21 22232222345555555554433 378999998754 456667777666677777765 55554421
Q ss_pred --------------CCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCe-----EEEEeCCCCcee
Q 014104 253 --------------LGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGY-----ASCWDLRTMKSL 310 (430)
Q Consensus 253 --------------dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~ 310 (430)
.-++.+.|..+|+.+.+..-. +...|..++..+||..++.+-..|. --+=-...++++
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 123455565666665544321 2337888888888876665533331 111111223333
Q ss_pred eeeecC-------CCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCCCceEEEEE
Q 014104 311 WETRIS-------PNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 311 ~~~~~~-------~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.-+... ...|-+++ .+-+..++ +|+-..+...+||..+|..+..-.
T Consensus 266 ~~~~~pee~~~~~anYigsiA-~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIA-ANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred cccCCCHHHHHHHHhhhhhee-ecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 322211 23456666 54444444 455466778899999998876544
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.97 E-value=0.34 Score=45.63 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=122.2
Q ss_pred EEe-cCC-eEE-EEeCCC----eEEEEecCCCeeEEee-ecCCceeEEEEecCCCEEE-EEeC-----------CeEEEE
Q 014104 118 CRM-KRG-LIL-TGVGDK----VMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLIG-----------TRICIW 177 (430)
Q Consensus 118 ~~~-~~~-~l~-s~~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~-----------~~i~vw 177 (430)
..+ +++ ++| +-+..| .+++.|+.+++.+... .... ...+.|.++++.++ ...+ ..|..|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 344 456 444 434444 5999999999877533 3222 22399999999887 4433 237888
Q ss_pred EcCCCc----ccccCCCCce-eeeeEEEEcCCceEE-Eec--C-CeEEEEECCCC----eeeEEeecCCCCe-EEEEecC
Q 014104 178 RRNGLR----SVFPSREGTF-MKGLCMRYFDPEAVV-GCE--D-GTARVFDMYSR----KCSQIIRMHCAPV-TSLSLSE 243 (430)
Q Consensus 178 d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~--d-g~i~vwd~~~~----~~~~~~~~~~~~i-~~~~~~~ 243 (430)
++.+.. .++....... ...+..+.++..++. ... + ..+.+.|+..+ .....+......+ ..+....
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence 887764 2444444443 333444555555443 322 2 45888888764 2333443333333 4444444
Q ss_pred CCEEEEEe---CCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEE-EeCCC--eEEEEeCCCCceeeeee
Q 014104 244 DQLIISGS---SLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFA-GTTAG--YASCWDLRTMKSLWETR 314 (430)
Q Consensus 244 ~~~l~~~~---~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~ 314 (430)
+.+++... ..+.|...++.+... ...+.. +...+.-..+...+++|+. ...++ .|+++++..+.....+.
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 44444332 346788888887653 223332 4443333333444555554 44444 58889998333333333
Q ss_pred c-CCCceEEEEEeeCCCCeE-EEEc---CCCeEEEEEcCCCceE
Q 014104 315 I-SPNVVYSLQHLQNDTSTL-VVGG---IDGVLRVLDQNTGEVL 353 (430)
Q Consensus 315 ~-~~~~v~~l~~~s~~~~~l-~s~~---~dg~i~vwd~~~~~~~ 353 (430)
. ..+.|..+. ..+++..+ ++.+ .-+++..||+.+++..
T Consensus 367 ~p~~g~v~~~~-~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 367 LPEAGSVSGVS-GDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SSSSSEEEEEE-S-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcceEEeccC-CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2 235566655 55655533 2222 3468899999988754
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.93 E-value=0.3 Score=44.26 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=104.3
Q ss_pred ecCCCeeEEeeecCCce------eEEEEecCCCEEE-EEe-C--CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCce
Q 014104 138 SLEGYKCVEEYSLPNAA------SLVDFDFDESKIV-GLI-G--TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 138 d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~~-~--~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 206 (430)
|..||..+..+..+... .--+|..+|+.|+ ++. + ..+.+.|+++++...... .+......++++.+..+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 56677666655543221 1256788998887 433 4 457888888887543222 22222235555666556
Q ss_pred EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec--CCCEEEEEeC-----------------------CCeEEEEeC
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--EDQLIISGSS-----------------------LGSIAISGL 261 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~~~-----------------------dg~i~vwd~ 261 (430)
+-......++-.|+++.+....+......+-...|. .+...+.+.. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 555555688889999987766666556655445554 2322232211 235666788
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCC-CceeeeeecCC-CceEEEEEeeCCCCeEE
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRT-MKSLWETRISP-NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~-~~v~~l~~~s~~~~~l~ 334 (430)
.+|+....+. ....+..+.|+|....+++=+..| .-+||-+++ +.....+..+. ..+..=.+|.|||..|.
T Consensus 176 ~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8888766665 455788999999877666655443 135665543 33333332222 33444447999998664
Q ss_pred EE-----cCCCeEEEEEcCCCceEE
Q 014104 335 VG-----GIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 335 s~-----~~dg~i~vwd~~~~~~~~ 354 (430)
-- +.+..|.-+|+.+++...
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceE
Confidence 32 235567788888876543
No 391
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.91 E-value=0.35 Score=44.79 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=118.2
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCc-ee
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FM 194 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~ 194 (430)
...++.++.+..||.|.-.|.++++.+....... ....-.+..+|+.++++.++.+..+|..+++..+...... ..
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3356788888899999999999988765444332 1122222237887779999989999998777655443333 11
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC---CeEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA---PVTSLSLSEDQLIISGSS--LGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~ 269 (430)
..-........+..++.+|.+...|..+|+.......... .+..-....+..++.+.. ++.+.-.|..+|+....
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence 1111111222255555789999999998988777553221 111000012345666665 66788889888888777
Q ss_pred EecCCCCCeEE---EEEecC-----CCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 270 LRSTDCTGIKT---LCYNPC-----SRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 270 ~~~~~~~~v~~---~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
.+..+...-.. ...-.. +.-++.++.++.+...|..+++.+.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 43211111110 101111 123356677888999999999999887764
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.84 E-value=0.22 Score=42.76 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=75.0
Q ss_pred EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
.+.+-...+..++|+|+ .++++....+.|...+. +|+.++++.-...+....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 44455567999999975 46777778889998996 5888888875344578899998777777766668999999884
Q ss_pred CCc------eeeeee-----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 306 TMK------SLWETR-----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 306 ~~~------~~~~~~-----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
... ....+. .+...+-+++ ++|.++.|+.+-...-..+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla-~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLA-YDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEE-EETTTTEEEEEEESSSEEEEEEE
T ss_pred ccccccchhhceEEecccccCCCcceEEEE-EcCCCCEEEEEeCCCChhhEEEc
Confidence 321 111111 2335678888 99988888777766666666655
No 393
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.79 E-value=0.00067 Score=60.50 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=45.0
Q ss_pred CCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 19 ~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
.....-..||+|+.+++|+|||...|++++++|+.|+..+.|..-|+..-.
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL 117 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDL 117 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeeh
Confidence 455566789999999999999999999999999999999999999966533
No 394
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.78 E-value=0.7 Score=46.43 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=118.6
Q ss_pred CeEEEEeCCCeEEEE--ecCCCeeEEe---eecCCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCcccccCCCCceeee
Q 014104 123 GLILTGVGDKVMRLW--SLEGYKCVEE---YSLPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLRSVFPSREGTFMKG 196 (430)
Q Consensus 123 ~~l~s~~~dg~i~iw--d~~~~~~~~~---~~~~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (430)
++|.++..||.+.-+ |..+++.-.. .-+..++..-.|+..++. +++.+|.-..+|..+..-......-.....+
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~ 675 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM 675 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence 399999999998766 4455543322 223344455666665544 4477777777766554332111111111111
Q ss_pred eEEEE-cCCc-eEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecCC-CEEEEEeC-----------C---CeEE
Q 014104 197 LCMRY-FDPE-AVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGSS-----------L---GSIA 257 (430)
Q Consensus 197 ~~~~~-~~~~-l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~~-----------d---g~i~ 257 (430)
+.+.. ..++ ++++. .+.+.+.-+..-+. ++++.. ......+++.+. ..+.+.+. . ..++
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~ 753 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLR 753 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEE
Confidence 11111 1122 44444 44566665543222 233322 233455555542 22222221 1 2467
Q ss_pred EEeCCCCceeEEEecCCCC---CeEEEEEecC-CCEEEEEe----------CCCeEEEEeCCCCceeeeeecC--CCceE
Q 014104 258 ISGLSSDQRVATLRSTDCT---GIKTLCYNPC-SRLVFAGT----------TAGYASCWDLRTMKSLWETRIS--PNVVY 321 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~--~~~v~ 321 (430)
++|-.+-+.+...+-.... .+.++.|..| +.++++|+ ..|.|.+|....++.+.....+ .+.+.
T Consensus 754 vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~ 833 (1096)
T KOG1897|consen 754 VLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVY 833 (1096)
T ss_pred EecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecccee
Confidence 7777766655444321222 4555668877 66777775 2477888887764444333322 36777
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++..| +|++||.- ...|++|+..+.+.++.-
T Consensus 834 aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e 864 (1096)
T KOG1897|consen 834 ALVEF--NGKLLAGI--NQSVRLYEWTTERELRIE 864 (1096)
T ss_pred ehhhh--CCeEEEec--CcEEEEEEccccceehhh
Confidence 77633 67766644 568999999877555443
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.72 E-value=0.27 Score=40.78 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred CeEEEEEecCCCEEE-EEeCCCeEEEEe--CCCCce-----eeeeecC----CCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 277 GIKTLCYNPCSRLVF-AGTTAGYASCWD--LRTMKS-----LWETRIS----PNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~-~~~~dg~i~i~d--~~~~~~-----~~~~~~~----~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
--..++|+.+.+.+. +-+.+-.|.-|| ..+|.. +..++.. ....-.++ +..+|.+.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCcEEEE
Confidence 345678887776555 555667787777 555533 2222221 11122333 5567787777778899999
Q ss_pred EEcCCCceEEEEEeccCc
Q 014104 345 LDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~~ 362 (430)
.|..+|+.+.++......
T Consensus 238 ~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ECCCCCcEEEEEEcCCCc
Confidence 999999999999876553
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.72 E-value=0.0061 Score=36.77 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
...|.+++|+|...++|.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 447999999999999999999999999998 45543
No 397
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.70 E-value=0.14 Score=50.13 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=61.0
Q ss_pred CCeEEEEecCC-CEEEEEe------CCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC--------
Q 014104 234 APVTSLSLSED-QLIISGS------SLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-------- 296 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 296 (430)
..+.+.+++|+ +.++... .|. .+.+++.. +.. ..+.. ....+.-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec--CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 45678888876 5444433 233 56666642 333 33332 2247778999998877766432
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
+.+.+.++..++... ...+.|..+. +||||..++... +|.|++
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~-wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQ-LSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEE-ECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 2245799999 999999887765 467776
No 398
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.23 Score=40.36 Aligned_cols=174 Identities=12% Similarity=0.041 Sum_probs=104.7
Q ss_pred EEEecCC-eEEEEeC--CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEE--EEEeCCeEEEEEcCCCccccc-CC
Q 014104 117 QCRMKRG-LILTGVG--DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKI--VGLIGTRICIWRRNGLRSVFP-SR 189 (430)
Q Consensus 117 ~~~~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l--~~~~~~~i~vwd~~~~~~~~~-~~ 189 (430)
.+.+.+| ++.+.+. ...|++||+.+++.+..-... .....-.+..-++.+ +.-.+|....+|.++.+.+-. ..
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4566677 6666554 347999999999988766544 222222222333443 377888889999887664322 12
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--C---CCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
++. ...+..++..++.+....+++.-|.++-....++... . ..++-+.|-++...+-.-.+..|...|..+|
T Consensus 130 ~Ge---GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 130 EGE---GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred CCc---ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCC
Confidence 222 3556667777887777778888887765544333211 1 2334556655655555556666777777777
Q ss_pred ceeEEEec-----------CCCCCeEEEEEecCCC-EEEEE
Q 014104 265 QRVATLRS-----------TDCTGIKTLCYNPCSR-LVFAG 293 (430)
Q Consensus 265 ~~~~~~~~-----------~~~~~v~~~~~~~~~~-~l~~~ 293 (430)
+.+..+.. .+..-...+++.|++. ++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77655432 1333567788888874 44444
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.64 E-value=0.57 Score=43.42 Aligned_cols=42 Identities=17% Similarity=-0.007 Sum_probs=35.0
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.+.++. .+|++++.++...-|.|.++|+.++..++.+++-.+
T Consensus 309 ~~~~i~-~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 309 EGESIC-LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEEEE-ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 366777 899999888887789999999999999988886433
No 400
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.26 Score=47.80 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=101.5
Q ss_pred CCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc--cCCCCceeeeeEEEEcCCce
Q 014104 130 GDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 206 (430)
.-..|+|+++.. +.+..+. .+.....+.|+.+...|+...+|++.+|++-+...-. .+.+.....+.....++..+
T Consensus 62 a~~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 62 ARPYIRIFNISG-QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cceeEEEEeccc-cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 345788998654 5555444 3446666888888888889999999999987765333 11222222334444455556
Q ss_pred EEEecCCeEEEEECCCCeeeEEeec---CCCCeEEEEec-CC--CEEEEEeCCCe--EEEEeCCCC-ceeEEEecCCCCC
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRM---HCAPVTSLSLS-ED--QLIISGSSLGS--IAISGLSSD-QRVATLRSTDCTG 277 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~~-~~--~~l~~~~~dg~--i~vwd~~~~-~~~~~~~~~~~~~ 277 (430)
++-..+|.+.+-+-.....+..++. ..-+-.|-... |+ ..++. ..+-. ..+...... .....+.. ....
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll-~v~~~v~~~~~q~~~~~~q~~~~~~-~~~~ 218 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL-DVDVAVGLHICQVEESRVQLHALSW-PNSS 218 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE-eechhhhhcccceecccccccccCC-CCce
Confidence 6666777776654322222333322 11111222222 22 11111 11100 011111111 11122222 2246
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
+..+.+||++++|+--...|.|.+-+....+.+.++.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 8889999999999999999999999888777766655
No 401
>PHA03098 kelch-like protein; Provisional
Probab=96.42 E-value=0.33 Score=47.50 Aligned_cols=93 Identities=9% Similarity=0.104 Sum_probs=46.7
Q ss_pred eEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCCCeEEEEEecC
Q 014104 214 TARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC 286 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 286 (430)
.+..||..+++-... +...... .+++...+.+++.|+.+ ..+..||..+++-...-.......-.+++ .-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccccc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EEC
Confidence 577888877653221 1111111 12233356677777755 35778888766533211110111111222 235
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCc
Q 014104 287 SRLVFAGTTA------GYASCWDLRTMK 308 (430)
Q Consensus 287 ~~~l~~~~~d------g~i~i~d~~~~~ 308 (430)
++..+.|+.+ ..+..||..+++
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 6666777632 358889987653
No 402
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0045 Score=51.61 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=50.0
Q ss_pred CCCCCCCccCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 17 SSKPRATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 17 ~~~~~~~~~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+....-++..||.|+.+.|+-.| |.+||..++++-.....++++..+|+.||+-++
T Consensus 195 ~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF 251 (332)
T KOG3926|consen 195 PDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF 251 (332)
T ss_pred CCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33356688899999999999888 999999999999999999999999999998775
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.26 E-value=0.34 Score=44.44 Aligned_cols=188 Identities=12% Similarity=0.049 Sum_probs=84.2
Q ss_pred CCCEEE--EEeCCeEEEEEcCCCcc---cccCCCC-------c--eeeeeEEEEcCCceEEEe--c----CCeEEEEECC
Q 014104 162 DESKIV--GLIGTRICIWRRNGLRS---VFPSREG-------T--FMKGLCMRYFDPEAVVGC--E----DGTARVFDMY 221 (430)
Q Consensus 162 ~~~~l~--~~~~~~i~vwd~~~~~~---~~~~~~~-------~--~~~~~~~~~~~~~l~~~~--~----dg~i~vwd~~ 221 (430)
+.++|+ +-.++.|.++|+.+... +.+..+. . ........+.+..++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345565 55789999999984321 1111111 0 001111222333455432 2 2567788877
Q ss_pred CCeeeEEeecCC---CCeEEEEecCC-CEEEEEeC--------------------CCeEEEEeCCCCceeEEEecCCCC-
Q 014104 222 SRKCSQIIRMHC---APVTSLSLSED-QLIISGSS--------------------LGSIAISGLSSDQRVATLRSTDCT- 276 (430)
Q Consensus 222 ~~~~~~~~~~~~---~~i~~~~~~~~-~~l~~~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~~- 276 (430)
+.+.....+... ..-..+.+.|. +.++|... ..++.+||+.+.+.++++.-..++
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 776665554322 23355666665 66666542 358999999999999999864333
Q ss_pred CeEEEEEe--cCCCEEEEEe-CCCeEEEEeC-CCCc----eeeeeec-----------------CCCceEEEEEeeCCCC
Q 014104 277 GIKTLCYN--PCSRLVFAGT-TAGYASCWDL-RTMK----SLWETRI-----------------SPNVVYSLQHLQNDTS 331 (430)
Q Consensus 277 ~v~~~~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~-----------------~~~~v~~l~~~s~~~~ 331 (430)
.+..+.|. |+..+=++|+ -.++|..|-- ..++ .+.++.. -..-|+.+. +|.|.+
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~-iSlDDr 324 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL-ISLDDR 324 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE-E-TTS-
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE-EccCCC
Confidence 45677775 4444444333 2334444433 3332 1111111 124578888 999999
Q ss_pred eEEEEc-CCCeEEEEEcCCC
Q 014104 332 TLVVGG-IDGVLRVLDQNTG 350 (430)
Q Consensus 332 ~l~s~~-~dg~i~vwd~~~~ 350 (430)
+|..+. ..|.|+.||+...
T Consensus 325 fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcccCCcEEEEecCCC
Confidence 997766 7899999999864
No 404
>PHA03098 kelch-like protein; Provisional
Probab=96.22 E-value=0.48 Score=46.35 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=86.2
Q ss_pred CCeEEEEeCCC------eEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCcccccC
Q 014104 122 RGLILTGVGDK------VMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRSVFPS 188 (430)
Q Consensus 122 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~~~~ 188 (430)
+..++.||.++ .+..||..+.+....-..+.. ........++..++ |+.+ ..+..||..+.+-....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 33566666542 567888877665332222211 11122233555544 5543 34777888766522111
Q ss_pred -CCCceeeeeEEEEcCCceEEEecC------CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC------
Q 014104 189 -REGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL------ 253 (430)
Q Consensus 189 -~~~~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d------ 253 (430)
..............+...+.|+.+ ..+..||+.+++-.. .+..... -.++....+.+++.|+.+
T Consensus 375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCc
Confidence 111111111222233335556532 468889987654221 1111111 112333355666666543
Q ss_pred --CeEEEEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 254 --GSIAISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
..+.+||..+++-...-..... .....+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899887654322111011 11122222 66677777654 457788877653
No 405
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.21 E-value=1 Score=41.68 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=118.6
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCcccccCCCCc---eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT---FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA- 234 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~- 234 (430)
..-++..+++..+|.+.-.|.+++..++...... ....-.+. .+..++.++.+|.++.+|..+|+.+........
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~-~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG-SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE-eCCeEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 4446666667888888888888887554332221 11111111 234489999999999999989999888876551
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCC--CCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCcee
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD--CTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSL 310 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~ 310 (430)
.+..-....+..+..++.++.+...|..+|+......... ...+..--.. ....++.+.. ++.+.-+|..+|+..
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111111123556666678999999999999887765321 1111111111 2234555555 667888888888877
Q ss_pred eeeecCC----CceEEEEEeeC----CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 311 WETRISP----NVVYSLQHLQN----DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 311 ~~~~~~~----~~v~~l~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
...+.+. ..+.....+.. .+.-+..++.++.+...|..+|+.+..+...
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 6643221 11100110100 1123356677888999999999999888874
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.59 Score=40.35 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=84.6
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+-...+.++.|+|+ +.+.+......-.|+=..+|+.+++++-..-.....+.+..+|++.++--.++.++++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999987 6777777667666776678999999875444466778888888888887788889888776542
Q ss_pred eeeee-------e--cC-CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 SLWET-------R--IS-PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ~~~~~-------~--~~-~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+... . .+ ....-+++ ++|..+.|..+-+-.-+.||.+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA-~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLA-WDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeee-cCCCCceEEEEEccCCcEEEEEe
Confidence 22111 1 11 34566788 99999988888877777777765
No 407
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.10 E-value=1.2 Score=41.44 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=82.5
Q ss_pred eEEEEeCCCeEEEEecCCCe-----eEEeeecCCceeEEEEe---c--CCCEEEEEeCCeEEEEEcCCCc----------
Q 014104 124 LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNAASLVDFD---F--DESKIVGLIGTRICIWRRNGLR---------- 183 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~---~--~~~~l~~~~~~~i~vwd~~~~~---------- 183 (430)
.+++||..|.++||+..... .+-+.+...++..+..- + +...|+.-.-..+.+|.+....
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 99999999999999986533 33333334444433332 2 3345667788888888873211
Q ss_pred --ccccCCCCceeeeeEEEEcCC-----ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 184 --SVFPSREGTFMKGLCMRYFDP-----EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
..+..+-.....-++.-+++. .+++-+.||.+.+++-+.-.....+.. .--...+.+.+. +.|++++.+..
T Consensus 119 L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 119 LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence 011111222223344445443 288899999999999765443333332 112234566654 78888888888
Q ss_pred EEEEeC
Q 014104 256 IAISGL 261 (430)
Q Consensus 256 i~vwd~ 261 (430)
+.-|..
T Consensus 198 l~~Yky 203 (418)
T PF14727_consen 198 LECYKY 203 (418)
T ss_pred EEEecH
Confidence 888864
No 408
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.03 E-value=2 Score=43.43 Aligned_cols=230 Identities=13% Similarity=0.038 Sum_probs=123.2
Q ss_pred cceeEEEe--cC--C--eEEEEeC---CCeEEEEecCCC-eeEEeeecCC--ceeEEE--Eec--CCCEEEEEeCCeEEE
Q 014104 113 VGVDQCRM--KR--G--LILTGVG---DKVMRLWSLEGY-KCVEEYSLPN--AASLVD--FDF--DESKIVGLIGTRICI 176 (430)
Q Consensus 113 ~~v~~~~~--~~--~--~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~--~~~~~~--~~~--~~~~l~~~~~~~i~v 176 (430)
++|..++. .+ + .++|++. ||++|+....-+ ..+...+.++ +...+. +++ |. +++-+.-+.-++
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~-ylvlsf~~eTrv 432 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDN-YLVLSFISETRV 432 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCc-EEEEEeccceEE
Confidence 47777766 22 2 6777653 899999864432 3344444443 333333 222 33 666666666666
Q ss_pred EEcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCC
Q 014104 177 WRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL 253 (430)
Q Consensus 177 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d 253 (430)
..+...-. ..........+..+-...++.++=... ..|++++-. ........ .+.++..+.+ +...++.++.+
T Consensus 433 l~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~ 508 (1096)
T KOG1897|consen 433 LNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGG 508 (1096)
T ss_pred EEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCc
Confidence 66654421 111111222233333334444333333 357777643 23333332 2334444444 44677778878
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC------CEEEEEeCCCeEEEEeC-CCCceeeee--ecC--CCceEE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS------RLVFAGTTAGYASCWDL-RTMKSLWET--RIS--PNVVYS 322 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~-~~~~~~~~~--~~~--~~~v~~ 322 (430)
+.+...++..+.............|.|+.++|-| ++++.|..+..+.+.-. .+...+... .+. +..|.-
T Consensus 509 ~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~ 588 (1096)
T KOG1897|consen 509 LALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL 588 (1096)
T ss_pred cEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee
Confidence 8888888876663333332245689999999753 37888887776555433 223222211 111 122333
Q ss_pred EEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.. +-.|..+|.++..||.+..|-+.
T Consensus 589 ~~-~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 589 TT-FEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EE-eeccceEEEEEcCCceEEEEEEE
Confidence 33 55567899999999998766443
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.03 E-value=0.73 Score=38.35 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=65.6
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEe--CCCCc-----eeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISG--LSSDQ-----RVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd--~~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
-+.++|+.+ .+.++-+.+-+|.-|| ..+|. .+..++.. .....-.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 355667633 3445556666776676 44443 23333320 111334566677889888888899999999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
..+|+.+.++......|++.+|-.++-..+++
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 99999999999888999999844444444443
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.95 E-value=0.92 Score=43.60 Aligned_cols=179 Identities=9% Similarity=-0.083 Sum_probs=86.6
Q ss_pred eEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeEEEecCCCC
Q 014104 206 AVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL--GSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 206 l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
+++|+.+ .++..||..+++-.. .+...... .+++...+.+.+.|+.+ ..+..||..+++-...-.-....
T Consensus 275 yviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r 353 (480)
T PHA02790 275 YLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR 353 (480)
T ss_pred EEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC
Confidence 5666644 357778887764322 12111111 12233355666777653 46888887765432211110111
Q ss_pred -CeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 277 -GIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 277 -~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
....+. -+|+..+.|+.++ .+..||.++++-.. .+....... ++ ..-+++..+.|+ .+.+||..++
T Consensus 354 ~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~--~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 354 CNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA--LVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred cccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE--EEECCEEEEECC---ceEEecCCCC
Confidence 112222 2677777777553 47788887653221 111111111 12 123455555553 4566776544
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCC-----CeEEEEEecC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNS-----KYIRLWKFNY 425 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~D-----g~v~vw~~~~ 425 (430)
+-... .. ++. .+.....+.++++..+.||.+ .+|..||..+
T Consensus 426 ~W~~~-~~--------------------------------m~~-~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 426 TWTLI-DD--------------------------------PIY-PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cEeEc-CC--------------------------------CCC-CccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 32211 00 000 112233455688888888865 3577888776
Q ss_pred CC
Q 014104 426 SD 427 (430)
Q Consensus 426 ~~ 427 (430)
++
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 54
No 411
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.89 E-value=1.6 Score=41.13 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=103.2
Q ss_pred EEEEecCCCEEE-E-EeCCe----EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-----------CCeEEEE
Q 014104 156 LVDFDFDESKIV-G-LIGTR----ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVF 218 (430)
Q Consensus 156 ~~~~~~~~~~l~-~-~~~~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~vw 218 (430)
...++|++++++ + +..|. ++++|+++++.+...........+.|..++..++.... ...|+.|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 467899999998 3 34443 99999999975433222222222566656555544432 2347888
Q ss_pred ECCCCee--eEEeecCCCC--eEEEEecCC-CEEEE-EeC--C-CeEEEEeCCCC----ceeEEEecCCCCCeEEEEEec
Q 014104 219 DMYSRKC--SQIIRMHCAP--VTSLSLSED-QLIIS-GSS--L-GSIAISGLSSD----QRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 219 d~~~~~~--~~~~~~~~~~--i~~~~~~~~-~~l~~-~~~--d-g~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~ 285 (430)
.+.+... ...+...... ...+..+++ ++++. ... + ..+.+.|+..+ .....+.. ....+....-+.
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~ 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHH 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEE
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEcc
Confidence 8877643 2444443333 567777765 55443 322 2 45888888874 23333333 233343333333
Q ss_pred CCCEEEEEe---CCCeEEEEeCCCCce---eeeeecCCC--ceEEEEEeeCCCCeE-EEEcCCC--eEEEEEcCCCceEE
Q 014104 286 CSRLVFAGT---TAGYASCWDLRTMKS---LWETRISPN--VVYSLQHLQNDTSTL-VVGGIDG--VLRVLDQNTGEVLS 354 (430)
Q Consensus 286 ~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~l~~~s~~~~~l-~s~~~dg--~i~vwd~~~~~~~~ 354 (430)
.+.+++... .++.|...++.+... ...+..+.. .+..+. ..+.+| +..-.++ .|+++++..+....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~---~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS---LFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE---EETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE---EECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 444444432 346777778876542 224444444 344444 334444 4444443 57888988455555
Q ss_pred EEEe
Q 014104 355 RCVM 358 (430)
Q Consensus 355 ~~~~ 358 (430)
.+..
T Consensus 364 ~~~~ 367 (414)
T PF02897_consen 364 EIPL 367 (414)
T ss_dssp EEES
T ss_pred eecC
Confidence 5544
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.75 E-value=2.2 Score=41.94 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=91.5
Q ss_pred ceeEEEEecCCCEEE-EE------eCC--eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec------------
Q 014104 153 AASLVDFDFDESKIV-GL------IGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE------------ 211 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~------~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------ 211 (430)
.+...+++++|+.++ .. .+. .+.+++..+....+ ..+.....-.|++++..+++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 455688999999988 33 133 45555543322211 11222334556666555444432
Q ss_pred CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE---EeCCCCce-e---EEEecCCCCCeEEEEE
Q 014104 212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI---SGLSSDQR-V---ATLRSTDCTGIKTLCY 283 (430)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v---wd~~~~~~-~---~~~~~~~~~~v~~~~~ 283 (430)
.+.+.+.++..++... ...+.|..+.|+|+ ..++... ++.|.+ -....|.. + ..+.......+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2344444554443322 23567999999976 5554443 477776 44344431 1 1122213334688999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRT-MKSLWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.+++.++ ++..++...+|.+.- |.....+... ...+..++ -++ ..++....+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~va-a~~--~~iyv~~~~g~~~ 563 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVA-ASP--STVYVTDARAVLQ 563 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEe-cCC--ceEEEEcCCceEE
Confidence 9988855 555544444454332 2221111221 34555665 333 2344555555333
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.77 Score=44.79 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=40.2
Q ss_pred eEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
.|+|+++ +|+.+..+.-..+.+-.+.|+.+..+++...+|++.+|++.
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 5888887 67777766655668889999988889999999999999975
No 414
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.50 E-value=0.76 Score=34.70 Aligned_cols=106 Identities=5% Similarity=-0.021 Sum_probs=70.9
Q ss_pred eEEEEeCCCeEEEEecCCC--------eeEEeeecCCceeEEEEec-----CCCEEEEEeCCeEEEEEcCCCcccccCCC
Q 014104 124 LILTGVGDKVMRLWSLEGY--------KCVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLRSVFPSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 190 (430)
.|+.++.-|+|.|++.... ..+..+.....+.+++--+ +.+.|+.++...+..||+.....++...-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence 7888888899999987632 3455666666676665443 34567788999999999999887766554
Q ss_pred CceeeeeEEEEcCC---ceEEEecCCeEEEEECCCCeeeEEe
Q 014104 191 GTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 191 ~~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
......+.+...+. .++..+.+..|.-+|.+..+..++.
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 44444444443332 2666666678888887655555544
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.49 E-value=0.059 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.6
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..|..+. |+|...+||.++.+|.|.++.+ +++.+
T Consensus 12 ~~v~~~~-w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMS-WCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEE-ECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 5688888 9999999999999999999998 56544
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=1.2 Score=36.38 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=98.8
Q ss_pred eEEeeecCCceeEEEEecCCCEEE-EE---eCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCc-eEEEecCCeEEE
Q 014104 144 CVEEYSLPNAASLVDFDFDESKIV-GL---IGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPE-AVVGCEDGTARV 217 (430)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~dg~i~v 217 (430)
.++++.+......-.+..++..++ ++ ....|++||+.+++..+...-. .....-.+...+.. ..-.-.+|.-..
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEE
Confidence 444444433333333333334554 22 2456999999988765443322 11111122223333 233456788888
Q ss_pred EECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE----ecCCCCCeEEEEEecCCCEEEEE
Q 014104 218 FDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL----RSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 218 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
+|..+-+++..+. ..+.=+.++....+ ++.+....++..-|.++-....++ .+..-..+..+.|- +|...|-.
T Consensus 116 ~d~~t~~~lg~~~-y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV 192 (262)
T COG3823 116 YDADTLEELGRFS-YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV 192 (262)
T ss_pred EChHHhhhhcccc-cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee
Confidence 9998888877765 34555666664334 555555566777776654333322 22111123334443 55554443
Q ss_pred eCCCeEEEEeCCCCceeeeee------------cCCCceEEEEEeeCCC-CeEEEEc
Q 014104 294 TTAGYASCWDLRTMKSLWETR------------ISPNVVYSLQHLQNDT-STLVVGG 337 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~~~~~------------~~~~~v~~l~~~s~~~-~~l~s~~ 337 (430)
=.+..|...|..+|+.+..+. .|.+..+.++ +.|++ +++++|-
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA-~~~~~~r~~iTGK 248 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIA-HDPQQDRFLITGK 248 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEccCCchhcCcccccccccccee-ecCcCCeEEEecC
Confidence 344446666666666554332 2345677888 66666 5666653
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=95.17 E-value=3.2 Score=39.94 Aligned_cols=181 Identities=11% Similarity=-0.017 Sum_probs=83.8
Q ss_pred cCC-eEEEEeCCC-----eEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeC--CeEEEEEcCCCcccc-cCC
Q 014104 121 KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIG--TRICIWRRNGLRSVF-PSR 189 (430)
Q Consensus 121 ~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~--~~i~vwd~~~~~~~~-~~~ 189 (430)
.++ .++.||.++ ++..||..+++....-..+... .......++...+ |+.+ ..+..||..+.+-.. ...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 344 566676543 5677888776544322222111 1122234555544 5443 457788876654211 111
Q ss_pred CCceeeeeEEEEcCCceEEEecC---CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCED---GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
.............+...+.|+.+ ..+..||..+.+=.. .+...... .+++...+.+.+.| |.+.+||.+++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEEC---CceEEecCCCC
Confidence 11111112223334445666654 346788877653221 11111111 12333345555555 35778998876
Q ss_pred ceeEEEecCCC-CCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCC
Q 014104 265 QRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTM 307 (430)
Q Consensus 265 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 307 (430)
+-...-..... .....+.+ +|+..++|+.+ ..+..||..++
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 54322111111 12222222 66777777754 24556665543
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.10 E-value=0.54 Score=43.58 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE-EEeeCC----------------CCe-EEEE
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL-QHLQND----------------TST-LVVG 336 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l-~~~s~~----------------~~~-l~s~ 336 (430)
...+.+++.+|++++.++...-|.|.++|+.++..++.+++..+.-..- ....+. ..+ ++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3468899999999999998888999999999998888777765432221 101111 112 3345
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
-.-|.|-||.+++|..+..+....+
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEeCCC
Confidence 5789999999999999999886544
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.0038 Score=56.79 Aligned_cols=135 Identities=12% Similarity=0.163 Sum_probs=96.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMR 200 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~ 200 (430)
-++.++.+-.+..||-. ++.+.....+.....+++..++..++ +-..+.+.+||+++... .+.....+......++
T Consensus 48 nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~ws 126 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWS 126 (615)
T ss_pred ceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhc
Confidence 67777888888899844 45555555555666688888888766 77889999999987653 2232223333345566
Q ss_pred EcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 201 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
...+.++.+...|.+.+++..+.+.+...-.|...++++++.+.++.+.++.|..+.+-
T Consensus 127 Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 127 KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 66666888888999999998877766566558889999999987778877776655443
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.55 E-value=0.045 Score=53.81 Aligned_cols=115 Identities=11% Similarity=0.171 Sum_probs=67.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
+..+-.+++|++.+..+.. ...+.+|...+..+++....++...+ ++|
T Consensus 198 ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSp 245 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSP 245 (1283)
T ss_pred eeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhhee-------------------------------eCC
Confidence 5556667777776654332 24555677777777765433322222 578
Q ss_pred CCCEEEEEeCCCeEEEEeC-----CCCceeeeeecCC-CceEEEEEeeCCC---------CeEEEEc-CCCeEEEEEcCC
Q 014104 286 CSRLVFAGTTAGYASCWDL-----RTMKSLWETRISP-NVVYSLQHLQNDT---------STLVVGG-IDGVLRVLDQNT 349 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~-----~~~~~~~~~~~~~-~~v~~l~~~s~~~---------~~l~s~~-~dg~i~vwd~~~ 349 (430)
||..++.++.||.++.|.+ ....++...+.|. .+-.|.. +..+. .++++++ .+..+++|....
T Consensus 246 DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 246 DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 8888888888887666654 3344555666665 2322322 22111 2445555 345689998877
Q ss_pred CceE
Q 014104 350 GEVL 353 (430)
Q Consensus 350 ~~~~ 353 (430)
.+|+
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 6665
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.42 E-value=3.6 Score=40.81 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------C-------------ceeEEEecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEE
Q 014104 244 DQLIISGSSLGSIAISGLSS-------D-------------QRVATLRSTDCTGIKTLCYN--PCSRLVFAGTTAGYASC 301 (430)
Q Consensus 244 ~~~l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i 301 (430)
.+.|+.|.+||.|.+|.+++ . ++...+. ......+++++ ...+++|+++....|.|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 36888888899999996521 0 1122222 34478899998 77889999988888888
Q ss_pred EeCCCC--ceee-eeecCCCceEEEEEeeCC----CC-eEEEEcCCCeEEEEEc
Q 014104 302 WDLRTM--KSLW-ETRISPNVVYSLQHLQND----TS-TLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 302 ~d~~~~--~~~~-~~~~~~~~v~~l~~~s~~----~~-~l~s~~~dg~i~vwd~ 347 (430)
|-.... +... .-..+...|.++.|+..+ |. .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 1111 111244668888844322 32 7888889999998887
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.28 E-value=0.46 Score=40.08 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEee---------------ecCCceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEY---------------SLPNAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
++..+...+.+|++-..+|.+++||+.+++.+..- .....+..+.++.+|.-++.-.+|..+.|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34445556669999999999999999998765432 112334556777778777777777888887
Q ss_pred cCCC
Q 014104 179 RNGL 182 (430)
Q Consensus 179 ~~~~ 182 (430)
.+-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 6543
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.22 E-value=3.3 Score=40.61 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=66.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEeCC-----C----Cceeeee
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN--PCSRLVFAGTTAGYASCWDLR-----T----MKSLWET 313 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~-----~----~~~~~~~ 313 (430)
...++-+....+.|||.+.+.....-.-...+.|.++.|. |+|+.+.+.+-...|.+|.-. + ..++.++
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3333344455799999998876544332246789999986 688888888888889988532 1 1233332
Q ss_pred --ecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 --RISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 --~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..++ .+|.+.. |-++|..++.+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~-Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSI-WLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCcccee-EecCCeEEEEe--CCEEEEECCC
Confidence 2333 5677887 77888766544 3578888754
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.14 E-value=1.9 Score=32.65 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CEEEEEeCCCeEEEEeCCCC--------ceeEEEecCCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 245 QLIISGSSLGSIAISGLSSD--------QRVATLRSTDCTGIKTLCYNP-----CSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
..|++++.-|+|.|++.... ..+..+. ....|++++-.| ....|+.|+.. .+..||+.....+.
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh
Confidence 47888888899999987633 3445555 456788887655 34577777665 59999999877665
Q ss_pred eeecCCCceEEEEE--eeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 312 ETRISPNVVYSLQH--LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 312 ~~~~~~~~v~~l~~--~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-+.+ +.|.++.+ +.....-++..+.+..|.=||.+-.+...+.
T Consensus 88 yke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 88 YKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 43333 56777661 2221233444445778888887654544443
No 425
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.08 E-value=4.7 Score=37.00 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=113.1
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-c-----------------CCceeEEEEecCCCEEE-E-E
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-L-----------------PNAASLVDFDFDESKIV-G-L 169 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~l~-~-~ 169 (430)
...+....+ |+| .++-. .++.|.+++..+++..+.-. + -.....+-|+||+++|+ . .
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 455666677 566 55544 46899999987775443211 2 11234588999999987 3 3
Q ss_pred eCCeE-----------------------------------EEEEcCCCccc-cc-----CCCCceeeeeEEEEcCCceEE
Q 014104 170 IGTRI-----------------------------------CIWRRNGLRSV-FP-----SREGTFMKGLCMRYFDPEAVV 208 (430)
Q Consensus 170 ~~~~i-----------------------------------~vwd~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~l~~ 208 (430)
.+..| .++|+++++.. +. .........+.|..++..++.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 23332 23444333321 00 112233344555555553332
Q ss_pred E--ecC---CeEEEEECCCCeeeEEeec-CCCCe---EEEEec-C-C-CEEEEEeCCC--eEEEEeCCCCceeEEEecCC
Q 014104 209 G--CED---GTARVFDMYSRKCSQIIRM-HCAPV---TSLSLS-E-D-QLIISGSSLG--SIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 209 ~--~~d---g~i~vwd~~~~~~~~~~~~-~~~~i---~~~~~~-~-~-~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~ 274 (430)
. ..+ ..+.+.|..++++...+.. ..+.| ....+. + + .++.....+| .|.+.+...+. ...+.. .
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~-G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS-G 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc-C
Confidence 2 222 2355667766654333321 22222 234443 3 3 4555555777 46666666554 334443 3
Q ss_pred CCCeEE-EEEecCCCEEE-EEeCC----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 275 CTGIKT-LCYNPCSRLVF-AGTTA----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 275 ~~~v~~-~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.-.|.. +.++++++.++ ++..+ ..++.-++..+..+..+....+.-..+. |||++++++-..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~-~Spdg~y~v~~~ 346 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS-FSPDGKYYVDTY 346 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE-E-TTSSEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE-ECCCCCEEEEEE
Confidence 446644 67788877655 55542 3566667773334445554433335777 999999876543
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.06 E-value=0.98 Score=42.06 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=88.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecC--------CCEEEEEeCCeEEEEEcCCCc--ccc---cCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD--------ESKIVGLIGTRICIWRRNGLR--SVF---PSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~i~vwd~~~~~--~~~---~~~~ 190 (430)
.+..|+.-..+.--|++-|+.+.....+..+ ++.+.|. .+.|+|-++..|.-.|..-.. ... ....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 3444555566667788889999988887666 7777774 345788888888888865322 111 1111
Q ss_pred CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCC
Q 014104 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~ 262 (430)
........+...+.++++|+..|.|++||.-.-..-..+++....|-.+..+. +.++++.+ ...+.+-|++
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11111233334556699999999999999644444445566677888888884 45555444 4677777764
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.99 E-value=0.24 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.4
Q ss_pred CeEEEEEecCC---CEEEEEeCCCeEEEEeCCC
Q 014104 277 GIKTLCYNPCS---RLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 277 ~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 306 (430)
.+.++.|+|.. .+|+.+-.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68899999754 4888888889999999995
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.97 E-value=5.5 Score=37.39 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=89.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--------CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--------QLIISGSSLGSIAISGLSS-DQRVATLRSTDCT 276 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--------~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 276 (430)
+..|+....++-.|++.|+.+.....|... -+.|.|. ..-+.|-.+..|.-.|.+- |..+.... ...
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKd 558 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKD 558 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehh
Confidence 445666667888899999999888877654 4666652 2334555666676667763 32222222 111
Q ss_pred CeEEEEEe----cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 277 GIKTLCYN----PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 277 ~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.++--.|+ ....++++++..|-|++||--.-+....+.+-...|..+. .+.+|+++++.+. ..+.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id-vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID-VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE-eecCCcEEEEeec-ceEEEEecc
Confidence 22222222 2345899999999999999764444445666667888888 8899998877664 567777775
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.56 E-value=0.13 Score=50.78 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=85.1
Q ss_pred CCeEEEEECCCCee-eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCC--CCce----eEEEecCCCCCeEEEE
Q 014104 212 DGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLS--SDQR----VATLRSTDCTGIKTLC 282 (430)
Q Consensus 212 dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~--~~~~----~~~~~~~~~~~v~~~~ 282 (430)
.+.+++-+..+.-. -..+++..+.+-.+.|... ..+. -.-|.+.|||+. .|+. .-+........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 34566666543221 1234556677777777522 1222 334678888875 3333 2222222333445555
Q ss_pred Eec---CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE----------EeeCCCCeEEEEcCCCeEEEEEcC-
Q 014104 283 YNP---CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ----------HLQNDTSTLVVGGIDGVLRVLDQN- 348 (430)
Q Consensus 283 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~----------~~s~~~~~l~s~~~dg~i~vwd~~- 348 (430)
|.| +..++..+-.++.|++.+...... .-+++|...+..++ -.||||..+++++.||.+++|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 554 556777888888888877654322 33455665544443 368999999999999998888653
Q ss_pred ----CCceEEEEEeccC
Q 014104 349 ----TGEVLSRCVMDIG 361 (430)
Q Consensus 349 ----~~~~~~~~~~~~~ 361 (430)
.-.++..++.|++
T Consensus 267 ~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eccccHhhhhccCCCCC
Confidence 2344555555553
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=0.76 Score=46.99 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=78.5
Q ss_pred EEEecCCeEEEEECCCCee-----eEEeec------CCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc-eeEEEec
Q 014104 207 VVGCEDGTARVFDMYSRKC-----SQIIRM------HCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRS 272 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~-----~~~~~~------~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-~~~~~~~ 272 (430)
+..+.+-.|..||+++-.. ...+.. ......++.|+|. ...+....|+.|++.-+.... .+..+.
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p- 196 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP- 196 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence 3334445688999875321 111111 1234567888875 456777889999988775322 233333
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC----CCceEEEEEeeCCCCeEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS----PNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~l~~~s~~~~~l~s 335 (430)
.....++++|+|.|+.+++|-..|++.-|-.. ++...++.+. ...|.++.|+.+ ..++++
T Consensus 197 -~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t-~eflvv 260 (1405)
T KOG3630|consen 197 -VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST-QEFLVV 260 (1405)
T ss_pred -cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc-eeEEEE
Confidence 55689999999999999999999999988765 3322222211 367888885544 344443
No 431
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.05 E-value=7.1 Score=35.81 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=108.4
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCcee---eeeEEEEcCCc--eEEEecC----CeEEEEECC--CCeeeEEe
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFM---KGLCMRYFDPE--AVVGCED----GTARVFDMY--SRKCSQII 229 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~--l~~~~~d----g~i~vwd~~--~~~~~~~~ 229 (430)
....++ +..++.+.+||+++.+..... .+... -...+...+.. |++++.. .+|++|.+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 444555 566788999999887643221 12211 11222323333 5555432 468888664 343 3332
Q ss_pred ec-------CCCCeEEEEec--C--CC-EEEEEeCCCeEEEEeCC---CC----ceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 230 RM-------HCAPVTSLSLS--E--DQ-LIISGSSLGSIAISGLS---SD----QRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 230 ~~-------~~~~i~~~~~~--~--~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.. ....++.+++. + +. +++....+|.+..|-+. .+ +.+++|. ....+..|..+.....|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCE
Confidence 21 12346667764 3 23 66667788988877764 33 4578887 45589999999888899
Q ss_pred EEEeCCCeEEEEeCCC-----Cceeeeeec--CCCceEEEEEee-CCCC-eE-EEEcCCCeEEEEEcCC-CceEEEEEe
Q 014104 291 FAGTTAGYASCWDLRT-----MKSLWETRI--SPNVVYSLQHLQ-NDTS-TL-VVGGIDGVLRVLDQNT-GEVLSRCVM 358 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~l~~~s-~~~~-~l-~s~~~dg~i~vwd~~~-~~~~~~~~~ 358 (430)
+.+-++.-|.-|+.+. ++.+....+ ....|-.|+.+. ++++ || ++.-.+++..||+.+. ...+..|..
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 9999998888888763 222322222 235677777442 3332 45 4555788999999874 355666654
No 432
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.99 E-value=0.61 Score=27.30 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=25.8
Q ss_pred CceEEEEEeeCCCC---eEEEEcCCCeEEEEEcCCC
Q 014104 318 NVVYSLQHLQNDTS---TLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 318 ~~v~~l~~~s~~~~---~l~s~~~dg~i~vwd~~~~ 350 (430)
+++.++. |+|+.. +|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~k-FsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCK-FSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEE-eCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4678888 997554 8888888899999999953
No 433
>PF13013 F-box-like_2: F-box-like domain
Probab=92.97 E-value=0.19 Score=36.65 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=27.3
Q ss_pred CccCCcHHHHHHHhcCCChhhhHHHHhhhH
Q 014104 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCK 52 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~ 52 (430)
.+..||.||+..||.+++..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 577899999999999999999988888887
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.86 E-value=6.6 Score=34.93 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=65.4
Q ss_pred eEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 283 (430)
+..++..|.|+.= ...|+.-+. ...-.+.+..+..+++ .+++++..-....-||.-... -..........|..|.|
T Consensus 117 ~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 117 AELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE
T ss_pred EEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhcee
Confidence 4444455554432 223332222 2334567888887766 666666555556688754221 22222224568999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeC-CCCceeee----eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 284 NPCSRLVFAGTTAGYASCWDL-RTMKSLWE----TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~----~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.|++.+.+++ ..|.|+.=+. ...+.-.. .....-.+..++ +.+++...++|+ .|.+.+ ..+.|+-
T Consensus 195 ~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a-~~~~~~~wa~gg-~G~l~~-S~DgGkt 264 (302)
T PF14870_consen 195 SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA-YRPPNEIWAVGG-SGTLLV-STDGGKT 264 (302)
T ss_dssp -TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE-ESSSS-EEEEES-TT-EEE-ESSTTSS
T ss_pred cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE-ecCCCCEEEEeC-CccEEE-eCCCCcc
Confidence 9998766654 8888888772 22222111 112223478888 877777666665 454432 3344543
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.82 E-value=4.9 Score=33.33 Aligned_cols=156 Identities=8% Similarity=0.066 Sum_probs=85.2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC--CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---C---eEEEE---eCC-
Q 014104 238 SLSLSEDQLIISGSSLGSIAISGLS--SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---G---YASCW---DLR- 305 (430)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~- 305 (430)
.+.....+.+..+...+.|.+|++. ..+.+.+|. .-+.|..+.++..|++|++--.+ . .+++| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 4444432344444667889999988 344566666 44789999999999999985332 2 56665 222
Q ss_pred -CCceee-eeecC---------------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccC
Q 014104 306 -TMKSLW-ETRIS---------------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIG 361 (430)
Q Consensus 306 -~~~~~~-~~~~~---------------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~ 361 (430)
..+++. ++-|| ...+.++++..-.|+. +.|+ ++++.+|.+..... ...+..
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~--- 174 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSF--- 174 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEEEecccccE---
Confidence 112221 12221 2345566644445554 4443 56788988763222 110100
Q ss_pred cceeeeccCCceEEEeecccccCCcccccCCCCCCC-CeeEEEEcCeEEEEeeCCCeEEEEEec
Q 014104 362 SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP-PITCLAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 362 ~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+-+ .+.+...|.. ....+++-+.|+|..++. .+++.++.
T Consensus 175 ----lDF-------------------e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 175 ----LDF-------------------ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKLE 214 (215)
T ss_pred ----Eec-------------------hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEEe
Confidence 000 0001111222 356788889999988865 67777764
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.79 E-value=1.3 Score=37.40 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE-------ec------CCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-------RS------TDCTGIKTLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 301 (430)
++..+.. .++++++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++- .+|..+.
T Consensus 14 ~~~~l~~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~ 91 (219)
T PF07569_consen 14 PVSFLEC-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS 91 (219)
T ss_pred ceEEEEe-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 4444544 4578888999999999999988765332 10 134578888888888877665 4577899
Q ss_pred EeCCCCc
Q 014104 302 WDLRTMK 308 (430)
Q Consensus 302 ~d~~~~~ 308 (430)
||..-+.
T Consensus 92 y~~~L~~ 98 (219)
T PF07569_consen 92 YSPDLGC 98 (219)
T ss_pred eccccce
Confidence 9877543
No 437
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.74 E-value=8.3 Score=35.80 Aligned_cols=183 Identities=10% Similarity=0.031 Sum_probs=81.5
Q ss_pred eEEEEe-CCCeEEEEecCC----CeeEEeeecC--------CceeEEEEecCCCEEE---EEeC----CeEEEEEcCCCc
Q 014104 124 LILTGV-GDKVMRLWSLEG----YKCVEEYSLP--------NAASLVDFDFDESKIV---GLIG----TRICIWRRNGLR 183 (430)
Q Consensus 124 ~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~--------~~~~~~~~~~~~~~l~---~~~~----~~i~vwd~~~~~ 183 (430)
+|+..+ ..+.|.|.|+.+ -+..+.++.. ........-|+|+.++ +..+ |.+.++|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 666655 678999999874 3445555521 1122345557887776 2222 557777777644
Q ss_pred cc--ccCCCCceeeeeEE--EEcCCceEEE--------------------ecCCeEEEEECCCCeeeEEeecCC--CCeE
Q 014104 184 SV--FPSREGTFMKGLCM--RYFDPEAVVG--------------------CEDGTARVFDMYSRKCSQIIRMHC--APVT 237 (430)
Q Consensus 184 ~~--~~~~~~~~~~~~~~--~~~~~~l~~~--------------------~~dg~i~vwd~~~~~~~~~~~~~~--~~i~ 237 (430)
.. +....+.......+ .+..+.+++. ....++.+||+.+.+.++++.--. ....
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence 22 22211111111112 1112223332 235689999999999999887432 2355
Q ss_pred EEEec--CC-C-EEEEEeCCCeEEEEeC-CCCce----eEEEecC----------------CCCCeEEEEEecCCCEEEE
Q 014104 238 SLSLS--ED-Q-LIISGSSLGSIAISGL-SSDQR----VATLRST----------------DCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 238 ~~~~~--~~-~-~l~~~~~dg~i~vwd~-~~~~~----~~~~~~~----------------~~~~v~~~~~~~~~~~l~~ 292 (430)
.+.|. |+ . -++.+.-..+|..|-- ..++- +..+... ...-|+.+..|.|.++|..
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 66665 43 2 2333334455555543 33321 2222110 0235789999999999986
Q ss_pred Ee-CCCeEEEEeCCC
Q 014104 293 GT-TAGYASCWDLRT 306 (430)
Q Consensus 293 ~~-~dg~i~i~d~~~ 306 (430)
.+ ..|.|+.||+..
T Consensus 329 s~W~~GdvrqYDISD 343 (461)
T PF05694_consen 329 SNWLHGDVRQYDISD 343 (461)
T ss_dssp EETTTTEEEEEE-SS
T ss_pred EcccCCcEEEEecCC
Confidence 65 589999999976
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=12 Score=38.46 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=43.2
Q ss_pred EEEecCCeEEEEeCCCeEEEEecCCCeeE---Ee----e--e---cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 117 QCRMKRGLILTGVGDKVMRLWSLEGYKCV---EE----Y--S---LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 117 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~----~--~---~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
|++-.++.++.|+.||.+.+|.+...... .. . . ....+..+...+.-..++...|+.+.++++...+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 55557789999999999999987653211 11 0 0 01223334444444556678888899888876554
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.58 E-value=4.9 Score=38.47 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=41.9
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCC
Q 014104 237 TSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRT 306 (430)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 306 (430)
..+.|+|. ..++.-.....-.+++++... ....++ ..+.|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 35678876 444444433333455555333 333343 5678999999999998876533 33468888653
No 440
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=8.2 Score=33.63 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=106.1
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeecCCCCe
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPV 236 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i 236 (430)
.+++.. +..+..+++.|+.+.... ....-.......++...+....++..|.-+.+.|+.+.+ ....+....+.-
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Confidence 455555 667788999999887632 222211112345666677777777756566677876543 333444444444
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 237 TSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
..++.+ +++...+..|+-+.+-|+.+... +.... ....+.++..+++..+++... .| +.+-|..+.+....+
T Consensus 175 ~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~y~vvy~-eg-vlivd~s~~ssp~~~ 249 (370)
T COG5276 175 HDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRAYLVVYD-EG-VLIVDVSGPSSPTVF 249 (370)
T ss_pred eeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCeeEEEEcc-cc-eEEEecCCCCCceEe
Confidence 566664 45666777889999999876433 33333 334788888887766665543 33 777787765533332
Q ss_pred ecC-CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 314 RIS-PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 314 ~~~-~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
... ...+.++..+.-.+++......+.-+.+-|+.+
T Consensus 250 gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 250 GSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 211 122222211334466666666666566666653
No 441
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=91.60 E-value=0.36 Score=35.51 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=48.1
Q ss_pred ccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC-----CCCCCCchHHHHHHHHc
Q 014104 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF-----SNTSGSSMRLHLEELAM 91 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 91 (430)
+-.+|++++.-||..+.|..|.+....|... +-.++.||+.+|.+.+.. .+....+|+..+..+..
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 5579999999999999999999999887432 234689999999999842 11133466665555433
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.58 E-value=5.6 Score=40.10 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCC----------Cce-e--eee--------ecCCCceEEEEEeeCC---CCe
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRT----------MKS-L--WET--------RISPNVVYSLQHLQND---TST 332 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~--~~~--------~~~~~~v~~l~~~s~~---~~~ 332 (430)
.|..+.++|+|.+|+..|..| |.|..+.. ++. + ..+ ..+...|..+. |+|. +..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~-WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR-WHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE-EcCCCCCCCe
Confidence 688999999999999888877 44444421 111 1 011 12235678888 8776 478
Q ss_pred EEEEcCCCeEEEEEcCCC
Q 014104 333 LVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~ 350 (430)
|+.-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.41 E-value=5.9 Score=38.97 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=63.0
Q ss_pred EEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCC-----C----CceeEEE--ec
Q 014104 208 VGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS-----S----DQRVATL--RS 272 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~-----~----~~~~~~~--~~ 272 (430)
+-+....+.|||.+.+.....-. ...+.|.+++|. |+ +.+++.+....|.++--. . -..++.+ ..
T Consensus 46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 34445679999998876443322 346899999998 44 777788888889888532 1 1223333 22
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....+|.+..|.++|.+++..+ ..+.|+|-.
T Consensus 126 ~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 126 HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 2235899999999987665443 458888753
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.85 E-value=2.6 Score=38.84 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=92.5
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCcc----cccCCCCce---ee-eeEEEEcCCceEEEecCCeEEEE-ECCCC-e
Q 014104 155 SLVDFDFDESKIVGLIGTRICIWRRNGLRS----VFPSREGTF---MK-GLCMRYFDPEAVVGCEDGTARVF-DMYSR-K 224 (430)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----~~~~~~~~~---~~-~~~~~~~~~~l~~~~~dg~i~vw-d~~~~-~ 224 (430)
..+-..||++.+..-...++.++++.+... +.....+.. +. .......+..+.++..||-|.-| |.+.+ .
T Consensus 224 ~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~ 303 (733)
T COG4590 224 SQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ 303 (733)
T ss_pred HhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC
Confidence 346678899999866668899998876542 222212211 00 11111223338889999999877 54432 1
Q ss_pred ----eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 225 ----CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 225 ----~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.++.++-...++..+.-..+ +-+++-+..|++.++.....+.+-.-. .-..+.-++++|++.++++-. .|.+
T Consensus 304 p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~~~~Ll~e~-~gki 380 (733)
T COG4590 304 PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPNQAYLLSED-QGKI 380 (733)
T ss_pred CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcccchheeec-CCce
Confidence 12223222334444433323 567788888999888765444432222 223567789999999998764 4669
Q ss_pred EEEeCCCCceeeee
Q 014104 300 SCWDLRTMKSLWET 313 (430)
Q Consensus 300 ~i~d~~~~~~~~~~ 313 (430)
+++.+++..+..++
T Consensus 381 ~~~~l~Nr~Peisw 394 (733)
T COG4590 381 RLAQLENRNPEISW 394 (733)
T ss_pred EEEEecCCCCCccH
Confidence 99998876554443
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=4.7 Score=41.69 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=73.8
Q ss_pred CeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeE-----EEec-----CCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 014104 235 PVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVA-----TLRS-----TDCTGIKTLCYNPCSR-LVFAGTTAGYAS 300 (430)
Q Consensus 235 ~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 300 (430)
+|..+...+| ..++..+.+-.|..||+++-..-. .+.. .......++.|+|.-. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4445555544 233444455579999987532211 1110 0223566778887543 345567788888
Q ss_pred EEeCCCCcee-eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 301 CWDLRTMKSL-WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 301 i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+..+...... ..+. -....++++ |+|.|+.++.|-..|++.-|... ++....+..
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~-WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~ 237 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVL-WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE 237 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEE-eccccceeeEecCCCeEEEeecc-cceeecccC
Confidence 8876643222 2222 235678888 99999999999999999998754 555555544
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.91 E-value=2.4 Score=41.70 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.8
Q ss_pred eEEEEEeeC----CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 320 VYSLQHLQN----DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 320 v~~l~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
...++ .++ +..+|++.+.|+++|+||+.+++++.+....
T Consensus 217 ~~~~~-~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLA-VSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEE-E-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred cceEE-EecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 44444 545 6779999999999999999999998776543
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.41 E-value=15 Score=37.09 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=50.9
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
-.|..+. ++|+|.+|+..|..| |.|-.+... -.-..+......+.+-+..-+. ..+...+.
T Consensus 85 f~v~~i~-~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~----------------~~~~~~~~ 146 (717)
T PF10168_consen 85 FEVHQIS-LNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE----------------RFFTSNSS 146 (717)
T ss_pred eeEEEEE-ECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech----------------hhccCCCC
Confidence 3577787 999999998888765 444444310 0001111111111000000000 01112344
Q ss_pred CCeeEEEEc-----CeEEEEeeCCCeEEEEEecCC
Q 014104 397 PPITCLAVG-----MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 397 ~~v~~v~~~-----~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..|..+.|+ +..|+.=..|+++|+||+...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 678889993 677888899999999999754
No 448
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.33 E-value=14 Score=32.27 Aligned_cols=181 Identities=9% Similarity=0.103 Sum_probs=110.7
Q ss_pred EeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
+.|-.+.|.++.|+. . .|++......-.||=...|+.+.++... .....+.+.-++++++ --.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 456666699999943 3 7777777777777777788999888753 4445577777777776 345677777766544
Q ss_pred ccc---------ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---eEEeecC-------CCCeEEEEe
Q 014104 183 RSV---------FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMH-------CAPVTSLSL 241 (430)
Q Consensus 183 ~~~---------~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-------~~~i~~~~~ 241 (430)
... +.. ........+++.+....+..+-+-.-+.||....... .+....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 111 1123345567777777788888887888877653321 1111111 124677888
Q ss_pred cC--CCEEEEEeCCCeEEEEeCCCCceeEEEec---CC-----CCCeEEEEEecCCCE
Q 014104 242 SE--DQLIISGSSLGSIAISGLSSDQRVATLRS---TD-----CTGIKTLCYNPCSRL 289 (430)
Q Consensus 242 ~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~-----~~~v~~~~~~~~~~~ 289 (430)
++ +.+++.+.+++.+.-.|.. |..+..+.- .| -.+...++..++|.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 84 4677888888888888865 554443321 01 114455666666553
No 449
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.07 E-value=22 Score=34.20 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC----eEEEEEecC
Q 014104 211 EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG----IKTLCYNPC 286 (430)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~ 286 (430)
..+...++|. .|.....+.........+...++..++.++. ..+..+|+. |+.+..... ... =..+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l--~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDL--PGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE----TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCC-CCEEEeeec--CCcccccccccEECCC
Confidence 3556777775 5666555543222221145556644555444 889999975 777666553 221 245677899
Q ss_pred CCEEEEEeC-------------CCeEEEEeCCCCceeeeeec--CC-------------------------CceEEEEEe
Q 014104 287 SRLVFAGTT-------------AGYASCWDLRTMKSLWETRI--SP-------------------------NVVYSLQHL 326 (430)
Q Consensus 287 ~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~~-------------------------~~v~~l~~~ 326 (430)
|++|+.+.. .-.|..+| .+|+.+..+.. |- --++++. +
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~-y 278 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID-Y 278 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE-E
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE-E
Confidence 999887771 12355666 66665544221 10 1367887 7
Q ss_pred eC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 327 QN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 327 s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
.+ ++..++++=.-..|...|.++++....+..+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 77 5555555555568999998888887777654
No 450
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.84 E-value=20 Score=33.30 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=19.5
Q ss_pred CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeC
Q 014104 213 GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 213 g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
..+.+||..+.+-.. .+......-.++....+.+.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 358889987764321 1211111123444445666666653
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.65 E-value=4.7 Score=42.34 Aligned_cols=152 Identities=10% Similarity=0.134 Sum_probs=84.2
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe--------cCCCEEEEEeCCCeEEEEeCCC----Ccee-----eee
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN--------PCSRLVFAGTTAGYASCWDLRT----MKSL-----WET 313 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~----~~~~-----~~~ 313 (430)
+.|+.+.+|+.+++.....+.+ ....|..|..- |.=+++..-..--.|.++-+.- +..- ..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 5688999999999777776665 44556555432 2223333333344466664432 1110 122
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC----CC---ceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN----TG---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~----~~---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
......|.++. ...+|+.+++| .|| .+|.+. +| +..+.+.. +.|.-..+ ++
T Consensus 175 ~~dg~~V~~I~-~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kicl--------t~s~ls~l-------vP--- 232 (1311)
T KOG1900|consen 175 SVDGVSVNCIT-YTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICL--------TKSVLSSL-------VP--- 232 (1311)
T ss_pred ecCCceEEEEE-eccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccC--------chhHHHHh-------hh---
Confidence 22245678887 77788877666 555 555543 11 10111110 00000000 00
Q ss_pred ccccCCCCCCCCeeEEEEcC--eEEEEeeCCCeEEEEEecC
Q 014104 387 CIDRIPKTIRPPITCLAVGM--KKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+-.++..+..+|..+++|. +.+.+=++.|+|++|++..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 12233356778999999974 4478889999999999976
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=9.4 Score=40.26 Aligned_cols=136 Identities=17% Similarity=0.209 Sum_probs=84.9
Q ss_pred EecCCeEEEEECCCCeeeEEeecCCCCeEEEEec---CC------CEEEEEeCCCeEEEEeCC----CCce---e--EEE
Q 014104 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS---ED------QLIISGSSLGSIAISGLS----SDQR---V--ATL 270 (430)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~---~~------~~l~~~~~dg~i~vwd~~----~~~~---~--~~~ 270 (430)
.+-|+.+.+|+.+++.....+.+-...|..|..- || ++++.-+.--.|.++-+. ++.. . .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3557899999999987777777766677666554 22 233333333445554332 1111 1 122
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC----CCC---c-e----------------eeeee-cCCCceEEEEE
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL----RTM---K-S----------------LWETR-ISPNVVYSLQH 325 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~----~~~---~-~----------------~~~~~-~~~~~v~~l~~ 325 (430)
.. ....|.++....+|+.+++| .|| .+|.+ ..+ + + +..+. .+.++|..+.
T Consensus 175 ~~-dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~- 249 (1311)
T KOG1900|consen 175 SV-DGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT- 249 (1311)
T ss_pred ec-CCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE-
Confidence 21 34478999988889877776 455 34433 111 0 0 11223 4567899998
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.......+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 877778899999999999999975
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.09 E-value=0.061 Score=49.33 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=94.9
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
+.+.+..++.++.+-.+..||- .++...... .++....++|.. + ..++.+-..+.+.+||+.+... ..++.....
T Consensus 42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~ 118 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTS 118 (615)
T ss_pred EecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcc
Confidence 3444555888888888999984 444444433 345556777773 3 4566677789999999975432 233221222
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
.-.-+.|++.+..++.|...|.+.|++..+.+.+...-.|...+.+++ +.+.+. .+.++.|..+.+-
T Consensus 119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a-v~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA-VTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE-ecccce-eeecCcHHHHHHh
Confidence 222267888889999999999999999988776665555888888998 877665 4555555555443
No 454
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=87.70 E-value=0.6 Score=42.42 Aligned_cols=38 Identities=24% Similarity=0.552 Sum_probs=33.9
Q ss_pred CccCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHhcCC
Q 014104 23 TIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINR 60 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 60 (430)
....||.|++..|.+.| ..-|+.+...||+.|+..+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 45689999999999999 788999999999999987663
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=87.61 E-value=22 Score=32.37 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCEEEEEeCCCeEEEE-eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 233 CAPVTSLSLSEDQLIISGSSLGSIAIS-GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 233 ~~~i~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
.+.+.++.+.++..++..+..|.+..- | ..++.-..........++++.+.|+++.+++| ..|.+.+=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 457888888887655566666765532 2 22232233333345589999999999877665 56765432333333222
Q ss_pred eeec----CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 312 ETRI----SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 312 ~~~~----~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.... ....+..+. +.+++..+++ +.+|.+.. ....|+--........
T Consensus 250 ~~~~~~~~~~~~l~~v~-~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~-------------------------- 300 (334)
T PRK13684 250 KPIIPEITNGYGYLDLA-YRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEE-------------------------- 300 (334)
T ss_pred cccCCccccccceeeEE-EcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCC--------------------------
Confidence 1111 123467777 7777775554 45665543 3333432222211000
Q ss_pred cccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEec
Q 014104 388 IDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~ 424 (430)
-....+.+.+ +++..+..|..|.|-.|+-.
T Consensus 301 -------~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 301 -------VPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred -------CCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 0124555555 56666667788988877643
No 456
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.37 E-value=23 Score=32.36 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=19.4
Q ss_pred CeEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeC
Q 014104 213 GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 213 g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
..+.+||..+.+= +..+......-.+++...+.+.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 4688899876542 222211011112333335566666664
No 457
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.19 E-value=2.2 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.4
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEY 148 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 148 (430)
.++.++.++.+|.+...|..+|+.+..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4567888888999999999888877543
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.14 E-value=29 Score=33.37 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=40.5
Q ss_pred cceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 113 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+|..+.++ .|.+..|+.|| +..||..+++.++.-..+. .+..+..+..++..+++ +..+.+.+.++
T Consensus 165 ~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G 234 (671)
T COG3292 165 TPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEG 234 (671)
T ss_pred ccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhh
Confidence 456666664 45777788877 5667777777776555443 33334455555555554 44466666665
No 459
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.79 E-value=24 Score=31.92 Aligned_cols=135 Identities=14% Similarity=0.159 Sum_probs=61.4
Q ss_pred EEecCCeEEEEeCC-----CeEEEEecCCCeeE---Eeee-cCCce-eEEEEecCCCEEE-EEe-----CCeEEEEEcCC
Q 014104 118 CRMKRGLILTGVGD-----KVMRLWSLEGYKCV---EEYS-LPNAA-SLVDFDFDESKIV-GLI-----GTRICIWRRNG 181 (430)
Q Consensus 118 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~-~~~~~-~~~~~~~~~~~l~-~~~-----~~~i~vwd~~~ 181 (430)
+.+.+..++.|+.+ ..+..+|+.+.+.. ..+. .+... ...+...++...+ ++. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 33444455556654 35666777665431 1111 12111 1122233455444 443 24678888877
Q ss_pred Cccc-cc-CCCCceeeeeEEEEcCCceEEEecCC----eEEEEECCCCeeeEEeecC---CCC-----eEEEEecCCCEE
Q 014104 182 LRSV-FP-SREGTFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKCSQIIRMH---CAP-----VTSLSLSEDQLI 247 (430)
Q Consensus 182 ~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~---~~~-----i~~~~~~~~~~l 247 (430)
.+-. .. ..........+....+...+.|+.++ .+.+||+.+.+-. .+... ..+ ...+....+.++
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCCCCceeccceeEEEECCCEEE
Confidence 6521 11 11111112222333444466676653 3568888776422 11110 011 122334355777
Q ss_pred EEEeCC
Q 014104 248 ISGSSL 253 (430)
Q Consensus 248 ~~~~~d 253 (430)
+.|+.+
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 778765
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.58 E-value=24 Score=31.84 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=33.1
Q ss_pred cCCceEEEec-----CCeEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCCC----eEEEEeCCCCce
Q 014104 202 FDPEAVVGCE-----DGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSLG----SIAISGLSSDQR 266 (430)
Q Consensus 202 ~~~~l~~~~~-----dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~ 266 (430)
.+...+.|+. ...+..||+.+.+= +..+......-..++...+.+.+.|+.++ .+.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3333555553 24688889876542 21121111111122233556777777653 356888887654
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.38 E-value=4.5 Score=23.23 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=25.2
Q ss_pred eEEE-EeCCCeEEEEecCCCeeEEeeecCCceeEEEE
Q 014104 124 LILT-GVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF 159 (430)
Q Consensus 124 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 159 (430)
+|++ ...+++|.++|..+++.+..+........+.|
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4444 44578999999999998888876544444443
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=17 Score=34.40 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
.|..+. .++.|..++-.+.+|.+.++=.+..-.-..+......+.+-+++-+..++. ....-.
T Consensus 105 eV~~vl-~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft----------------ss~~lt 167 (741)
T KOG4460|consen 105 EVYQVL-LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT----------------SSTSLT 167 (741)
T ss_pred EEEEEE-ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec----------------cCCcee
Confidence 366666 788999888888888655432111111111111111112222222222211 111123
Q ss_pred eeEEEEc-----CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 399 ITCLAVG-----MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 399 v~~v~~~-----~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+..++|+ +..|+.-+.|..||+|++....++
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4456662 456777788999999999865543
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.83 E-value=42 Score=35.63 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 227 (430)
+.....++|++....++ ++..|.|+++-...-+.......... .....+........+...+..+.+|.......+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~- 113 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV- 113 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee-
Confidence 34566789999999998 99999999998766543222111110 111111112222333344445555543221111
Q ss_pred EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 228 IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
.+...+++....+- .+ .-+ ..+.+++||..
T Consensus 114 ---~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---ecCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 12334444444322 34 455 88888888865
No 464
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.76 E-value=25 Score=31.19 Aligned_cols=165 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred eEEEEECCCCeeeEEee------cCCCCeEEEEecC-------CCEEEEEeCCCeEEEEeCCCCceeEEEecCCC-----
Q 014104 214 TARVFDMYSRKCSQIIR------MHCAPVTSLSLSE-------DQLIISGSSLGSIAISGLSSDQRVATLRSTDC----- 275 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~------~~~~~i~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----- 275 (430)
.|.+||+.+++.++.+. ...+.+..+.+.. +-..++=+..+.+.|+|+.+++.-+.+.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred -------------CCeEEEEEec---CCCEEEEEeCCCeEEEEeCCCC--------------ceeeeeecCCCceEEEEE
Q 014104 276 -------------TGIKTLCYNP---CSRLVFAGTTAGYASCWDLRTM--------------KSLWETRISPNVVYSLQH 325 (430)
Q Consensus 276 -------------~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~v~~l~~ 325 (430)
..+..++.+| +|+.|+-..-.+ -++|.+.+. +.+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~- 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA- 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE-
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE-
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC-----CceEEEEEec-cCcceeeeccC--CceEEEeecc
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT-----GEVLSRCVMD-IGSASSSSNKV--SGVIERNEGR 380 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~-~~~~~~~~~s~--d~~v~~~~~~ 380 (430)
++++|...++--..+.|..|+... ...+-..... -.....+.... +|.+++...+
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.67 E-value=5 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCCCeEEEEc-CCCeEEEEEcCCCceEEEEEec
Q 014104 328 NDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 328 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|++++|+++. .++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666554 6789999999999988888764
No 466
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=24 Score=30.89 Aligned_cols=150 Identities=10% Similarity=-0.000 Sum_probs=87.7
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCC
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSRE 190 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~ 190 (430)
-+..+.++.++.+.+..+.-++|.|+.+.+.-..+.. +.......+.-.|++.. +..+..+.+.|+.+.+. ++...-
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeee
Confidence 3445566777888888888999999987543322221 12244456666788877 55588888899887652 221111
Q ss_pred C-ceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 191 G-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 191 ~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
. .....-.....++....+..|+-+.+.|+..... +.... ....+.++..+++.-.++-. +.-+.+-|..+.+
T Consensus 168 a~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy-~egvlivd~s~~s 244 (370)
T COG5276 168 ALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPS 244 (370)
T ss_pred ccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc-ccceEEEecCCCC
Confidence 1 0000122333566677778899999999865432 22222 22367888887774333333 3345566665544
No 467
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.38 E-value=31 Score=31.91 Aligned_cols=102 Identities=11% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-----c--ee-EEEecC---CCCCeEEEEEecCCCEEEEEeCC------
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSD-----Q--RV-ATLRST---DCTGIKTLCYNPCSRLVFAGTTA------ 296 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~--~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d------ 296 (430)
.....+++.++. ++.++.....++.|.... + .+ ..+... +......++|.|+|.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 345778887776 444554443334454311 1 11 122221 12347789999999876644411
Q ss_pred -------------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 297 -------------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 297 -------------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|.|.-+|...++.. .+.........++ |+++|+++++-..
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~-~d~~G~l~~tdn~ 203 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHS-VDSWGDVFFCDND 203 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccce-ECCCCCEEEEccC
Confidence 44566666544332 2222223346787 8899987766443
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.16 E-value=21 Score=29.76 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=36.0
Q ss_pred CEEEEEeCCCeEEEEeCCC--CceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 288 RLVFAGTTAGYASCWDLRT--MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+.|+.+.....|.+|++.+ .+++.++..- +.|..+. ++..|++|+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~-y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLV-YSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEE-eccccceEEEEEe
Confidence 4555556677899999883 4455555543 8899999 9999999998653
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.08 E-value=21 Score=33.90 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeC---------CCCceeeeee-----------cCCCceEEEEEeeCCC---CeE
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDL---------RTMKSLWETR-----------ISPNVVYSLQHLQNDT---STL 333 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~-----------~~~~~v~~l~~~s~~~---~~l 333 (430)
.|..+..++.|..++-.+.+|.+.++=. +.|+..-..+ ...-.+...+ |+|+. ..|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~-WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAA-WHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeecc-ccCCccCCceE
Confidence 5777888999999999999996555431 1232221111 0112344555 78875 577
Q ss_pred EEEcCCCeEEEEEcCCCceEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~ 354 (430)
..-+.|+.|++||+.....+.
T Consensus 184 ~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEecCcEEEEEecCCcchhh
Confidence 777889999999998655443
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.71 E-value=31 Score=31.36 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=54.5
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEe---cCCCCCeEEEEEecC---CCEEEEEeC-C--------
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLR---STDCTGIKTLCYNPC---SRLVFAGTT-A-------- 296 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-------- 296 (430)
..+.|+|.|+..++.+...|.|++++ ..+.. +..+. .........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999885556667799999999 44443 22221 123347899999994 233433322 1
Q ss_pred CeEEEEeCCCC-------ceee-eeec---CCCceEEEEEeeCCCCeEEEEcCC
Q 014104 297 GYASCWDLRTM-------KSLW-ETRI---SPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 297 g~i~i~d~~~~-------~~~~-~~~~---~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
..|.-|....+ +.+. .+.. ....-..|. |.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~-fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLA-FGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEE-E-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCcccc-CCCCCcEEEEeCCC
Confidence 13444444322 1111 1122 123445677 99999766666543
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.34 E-value=18 Score=31.92 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe------CCCeEEEEeCCCCceeeeeec-----CCCceE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT------TAGYASCWDLRTMKSLWETRI-----SPNVVY 321 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~v~ 321 (430)
-..|++||..+.+-...-.+ -.+.|+.+.|..+.++++.|. ....+..||..+..-. .+.. -.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 34699999887665444433 567899999986666666663 3556888998865432 2222 136777
Q ss_pred EEEEeeCCCCeEE-EEc-C--CCeEEEEEcC
Q 014104 322 SLQHLQNDTSTLV-VGG-I--DGVLRVLDQN 348 (430)
Q Consensus 322 ~l~~~s~~~~~l~-s~~-~--dg~i~vwd~~ 348 (430)
.+.....|+..+. +|. . +..|..||=.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 7764444554443 333 2 3346666533
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=84.34 E-value=35 Score=31.67 Aligned_cols=26 Identities=4% Similarity=0.049 Sum_probs=17.1
Q ss_pred eEEEEcCeEEEEeeCCC------eEEEEEecC
Q 014104 400 TCLAVGMKKVVTTHNSK------YIRLWKFNY 425 (430)
Q Consensus 400 ~~v~~~~~~l~t~~~Dg------~v~vw~~~~ 425 (430)
.++.++++.++.||... .|..++.+.
T Consensus 338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 46777888888888642 455555544
No 473
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.00 E-value=36 Score=31.50 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=57.9
Q ss_pred eEEEEeCCC--Cce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE-eCCCC-----c--ee-eeeec----CC
Q 014104 255 SIAISGLSS--DQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCW-DLRTM-----K--SL-WETRI----SP 317 (430)
Q Consensus 255 ~i~vwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~-----~--~~-~~~~~----~~ 317 (430)
.|.+++-.+ |+. ...+.. .......+++.++| |+++.... |..| |.... + .+ ..+.. +.
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~ 123 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHH 123 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence 666665432 332 223332 23356889999888 44444444 4444 54321 1 11 11222 12
Q ss_pred CceEEEEEeeCCCCeEEEEcCC-------------------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGID-------------------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
.....+. +.|||.+.++-+.. |.|.-+|...++ +..+........-++++++|.+.
T Consensus 124 ~~~~~l~-~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 124 HSLNSLA-WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccccCce-ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEE
Confidence 4466787 89999866554421 445666655433 33333332333455666677664
No 474
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.95 E-value=30 Score=35.87 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eEEEEeCCCCceeEEEecCCCC---CeEEEEEecCCCE-EEEEe------------CCCeEEEEeCCCCceeeeeecCCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCT---GIKTLCYNPCSRL-VFAGT------------TAGYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~-l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~ 318 (430)
.|+++|..+++.+..+.-..+. .+..+.|+..... +...+ .+|.++.|++-......++-.+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
...-+.+..|-..++++| ....+++||+...++++.... +.-...
T Consensus 934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~----------------------------------k~~p~~ 978 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL----------------------------------KFIPNR 978 (1205)
T ss_pred CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhh----------------------------------ccCceE
Q ss_pred eeEEEEcCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 399 ITCLAVGMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 399 v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
|+.+.+.+.+++.|..--.|.++..+.++.-|
T Consensus 979 Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 979 ISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred EEEEeecceEEEEeeccceEEEEEEecCCCeE
No 475
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.21 E-value=30 Score=30.02 Aligned_cols=109 Identities=15% Similarity=0.061 Sum_probs=64.7
Q ss_pred CeEEEEecCC-CEEEEEe---CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe-CCCCce
Q 014104 235 PVTSLSLSED-QLIISGS---SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD-LRTMKS 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~ 309 (430)
.+.+.+++++ +.++... ....+.++.. +....... ....+..-.|++++...+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6788889865 5444443 3334555553 33333332 223677889999988777766666666663 333322
Q ss_pred e-eeeecC--CCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcC
Q 014104 310 L-WETRIS--PNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQN 348 (430)
Q Consensus 310 ~-~~~~~~--~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~ 348 (430)
. ..+... .+.|..+. +||||..++... .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~-vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALR-VSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEE-ECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2 112211 12799999 999999876655 35677766543
No 476
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.95 E-value=34 Score=30.53 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCC-------------CeEEEEEecCCCEEEEE------------------eCCCe
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCT-------------GIKTLCYNPCSRLVFAG------------------TTAGY 298 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~------------------~~dg~ 298 (430)
|-..|.+.+.| .+.+.+.++. ... ....+.+.++|..|++. -.|+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~--~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~ 97 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVS--AGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDV 97 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEE--CCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecce
Q ss_pred EEEEeCCCCceeeeeecCCCc---------------------------eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 299 ASCWDLRTMKSLWETRISPNV---------------------------VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~---------------------------v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
+.-.|+.+++.+.+...-..- ++++. ..++|.+|++.=.-..|.+.|..+|+
T Consensus 98 ~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~-~~~~G~yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 98 FQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVD-KDDDGDYLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred eEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeee-ecCCccEEEEecccCEEEEEECCCCc
Q ss_pred eEEEEEec-------cCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 352 VLSRCVMD-------IGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 352 ~~~~~~~~-------~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
.+..+.+. .. ...+-.-|.+++-.+..++.|.|+|
T Consensus 177 I~W~lgG~~~~df~~~~------------------------------------~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 177 IIWRLGGKRNSDFTLPA------------------------------------TNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EEEEeCCCCCCcccccC------------------------------------CcEeeccCCEEeccCCCCCEEEEEc
No 477
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.79 E-value=34 Score=30.42 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 238 SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+-.|+.+++.++-+..|.+..+|..+|+...... ..+....++|. |+++++|.
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~--vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF--LPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE--CCCCCccccee--CCEEEEEe
Confidence 4456667788888889999999998887654444 44578889996 88888764
No 478
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.76 E-value=3.4 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.0
Q ss_pred CeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 398 PITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 398 ~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
.|.+++....+++.+..-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 6889999999999999999999973
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.72 E-value=3.7 Score=22.15 Aligned_cols=26 Identities=46% Similarity=0.668 Sum_probs=21.7
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
..++.++.+|.+..+|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35778889999999999999887653
No 480
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=82.21 E-value=0.24 Score=43.14 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+..+..||..++..+++++..+++.+++.|+++...+....++|...|.+.+
T Consensus 5 ~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 5 PLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred ccchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 4456789999999999999999999999999999999999999998887775
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.07 E-value=31 Score=34.58 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred eEEEecCCeEEEEECCC-------C-------------eeeEEeecCCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCC
Q 014104 206 AVVGCEDGTARVFDMYS-------R-------------KCSQIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~ 262 (430)
|+.+..||.|.+|.+++ . ++...+. -....+.++++ .. ++||+++....|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 88999999999996531 0 0111222 24578999998 55 677777777777776544
Q ss_pred C--CceeEEEecCCCCCeEEEEEecCC---C---EEEEEeCCCeEEEEeC
Q 014104 263 S--DQRVATLRSTDCTGIKTLCYNPCS---R---LVFAGTTAGYASCWDL 304 (430)
Q Consensus 263 ~--~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 304 (430)
. .+....-...+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3 121111111144578899997644 2 7778888999999887
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=81.24 E-value=43 Score=30.49 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=71.2
Q ss_pred eEEEecCCeEEEE-ECCCCeeeEEee-cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC---CCCCeEE
Q 014104 206 AVVGCEDGTARVF-DMYSRKCSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST---DCTGIKT 280 (430)
Q Consensus 206 l~~~~~dg~i~vw-d~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~ 280 (430)
++..+..|.+..- | ..++.-..+. .....++++.+.++..++..+..|.+.+=....+..-.....+ ....+..
T Consensus 186 ~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~ 264 (334)
T PRK13684 186 YVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLD 264 (334)
T ss_pred EEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceee
Confidence 5555556665532 2 1222222222 2345788899887644444456677654233344332222211 1235788
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee---cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR---ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
+.+.|++..+++ +.+|.+. .....++.-.... .-....+.+. +..+++.++ .+..|.|--|+-
T Consensus 265 v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 265 LAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIV-FLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred EEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEE-EeCCCceEE-ECCCceEEEecC
Confidence 999988776555 4667554 3444444333322 1223567777 544555544 556788877753
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.21 E-value=9.5 Score=37.49 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.4
Q ss_pred CeEEEEEec----CCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 277 GIKTLCYNP----CSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 277 ~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
.+..+++++ +..+|++-+.|+++++||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6789999999999999999999986654
No 484
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=80.93 E-value=45 Score=32.41 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCeEEEEecC----C-CEEEEEeCCCeEEEEeCCC-----CceeEEEec----CCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 234 APVTSLSLSE----D-QLIISGSSLGSIAISGLSS-----DQRVATLRS----TDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 234 ~~i~~~~~~~----~-~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.-|..+.|.| + .-+++.-....|.||-+.. ++.+..-.. ...--...+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 4588899986 2 2455566788999998762 222222111 111134567899999888876665544
Q ss_pred EEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcCC-CeEEEEEcC
Q 014104 300 SCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGID-GVLRVLDQN 348 (430)
Q Consensus 300 ~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-g~i~vwd~~ 348 (430)
.+++++... ....++ ..+.|.|.+ |..||+.|+++-.. =.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCAC-WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCAC-WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEE-ecCcCCEEEEEeCCeEEEEEecCc
Confidence 566665432 223343 347788887 99999987665432 345788754
No 485
>PRK10115 protease 2; Provisional
Probab=80.84 E-value=69 Score=32.61 Aligned_cols=213 Identities=15% Similarity=0.029 Sum_probs=102.8
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC------CeEEEEEcCCCc----ccccCCCCceeeeeEEEE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG------TRICIWRRNGLR----SVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~ 201 (430)
.|++-|+.+++.+...-. .....++|.+|++.|+ +..+ ..|..+++.++. .++....+.. .+.....
T Consensus 154 ~l~v~d~~tg~~l~~~i~-~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~-~~~~~~s 231 (686)
T PRK10115 154 GIRFRNLETGNWYPELLD-NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTF-YVSLHKT 231 (686)
T ss_pred EEEEEECCCCCCCCcccc-CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCE-EEEEEEc
Confidence 578888888764322211 1224589999998877 4432 357788888773 2344333222 2222223
Q ss_pred -cCCceEEEe---cCCeEEEEECC--CCeeeEEeecCCCCeEEEEecCCCEEEEEeC----CCeEEEEeCCCCceeEEEe
Q 014104 202 -FDPEAVVGC---EDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSEDQLIISGSS----LGSIAISGLSSDQRVATLR 271 (430)
Q Consensus 202 -~~~~l~~~~---~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~ 271 (430)
++..++..+ .++.+.+++.. +++....+....+....+. +.++.+..-+. ...|...++........+.
T Consensus 232 ~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~ 310 (686)
T PRK10115 232 TSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELI 310 (686)
T ss_pred CCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEE
Confidence 344433332 24578888843 3332222222222223332 22333332222 2245555555211222333
Q ss_pred cCCC-CCeEEEEEecCCCEEEEEeCCCeEEE--EeCCCCceeeeee-cCCCceEEEEEee--CCCC-eEEEEc---CCCe
Q 014104 272 STDC-TGIKTLCYNPCSRLVFAGTTAGYASC--WDLRTMKSLWETR-ISPNVVYSLQHLQ--NDTS-TLVVGG---IDGV 341 (430)
Q Consensus 272 ~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~~~~~~~~-~~~~~v~~l~~~s--~~~~-~l~s~~---~dg~ 341 (430)
.+.. ..+..+.+. .+.++++...+|.-++ ++...+ .+..+. .....+..+. .+ +++. ++++.+ .-+.
T Consensus 311 ~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ss~~~P~~ 387 (686)
T PRK10115 311 PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIA-YNPEPETSRLRYGYSSMTTPDT 387 (686)
T ss_pred CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeec-ccCCCCCceEEEEEecCCCCCE
Confidence 3222 367878886 3345556666776544 454332 333333 2222233232 33 3333 444433 3478
Q ss_pred EEEEEcCCCc
Q 014104 342 LRVLDQNTGE 351 (430)
Q Consensus 342 i~vwd~~~~~ 351 (430)
+..+|+.+++
T Consensus 388 ~y~~d~~~~~ 397 (686)
T PRK10115 388 LFELDMDTGE 397 (686)
T ss_pred EEEEECCCCc
Confidence 8999988765
No 486
>PLN02153 epithiospecifier protein
Probab=80.38 E-value=46 Score=30.32 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=14.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 286 CSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 286 ~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
++++++.|+.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 55666666643 247888887643
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.33 E-value=47 Score=30.34 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=11.8
Q ss_pred EEEEcCeEEEEeeCCC
Q 014104 401 CLAVGMKKVVTTHNSK 416 (430)
Q Consensus 401 ~v~~~~~~l~t~~~Dg 416 (430)
++..+++.++.||.+.
T Consensus 317 ~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 317 SVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEcCCEEEEEeccCC
Confidence 4456888899998763
No 488
>PLN02193 nitrile-specifier protein
Probab=80.12 E-value=58 Score=31.33 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=63.2
Q ss_pred eEEEEECCCCeeeEEeecC---CC--C-eEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEec---CCCCCeE
Q 014104 214 TARVFDMYSRKCSQIIRMH---CA--P-VTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRS---TDCTGIK 279 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~---~~--~-i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~---~~~~~v~ 279 (430)
.+.+||+.+.+-. .+... .. . -.+++...+.+.+.|+.+ ..+..+|+.+.+-...-.. .....-.
T Consensus 194 ~v~~yD~~~~~W~-~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 194 HLYVFDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred cEEEEECCCCEEE-eCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 4778888765422 11110 00 0 112333345666667654 3688899887654321110 0111112
Q ss_pred EEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeeee-----ecCCCceEEEEEeeCCCCeEEEEcCC----CeEEEE
Q 014104 280 TLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWET-----RISPNVVYSLQHLQNDTSTLVVGGID----GVLRVL 345 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~s~~~~~l~s~~~d----g~i~vw 345 (430)
+++. -++++.+.|+.++ .+..||+.+.+-...- ...... ..++ ..+++..+.++.+ ..+.+|
T Consensus 273 ~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~--~~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 273 SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLE--VVQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEE--EECCcEEEEECCCCCccCceEEE
Confidence 2222 2556666666543 4677887765422110 000111 1122 1256666667655 457888
Q ss_pred EcCCCc
Q 014104 346 DQNTGE 351 (430)
Q Consensus 346 d~~~~~ 351 (430)
|+.+.+
T Consensus 349 D~~t~~ 354 (470)
T PLN02193 349 DPVQDK 354 (470)
T ss_pred ECCCCE
Confidence 887654
No 489
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.80 E-value=43 Score=29.65 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=102.8
Q ss_pred eeEEEEcCCceEEEecCCeEEEEECC------CC-eeeEEeec-----CCCCeEEEEecCC-------------CEEEEE
Q 014104 196 GLCMRYFDPEAVVGCEDGTARVFDMY------SR-KCSQIIRM-----HCAPVTSLSLSED-------------QLIISG 250 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~~~~~~~-------------~~l~~~ 250 (430)
.+++.+.++.-++....+...+||.. .. ..+-.+.. ..+..+.+.|+.. ..++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 34445555555666667788899875 12 22333331 1235566666521 236788
Q ss_pred eCCCeEEEEeCCCCce-----eEEEecCCCCC-eEEEEEecC--CCEEEEE-eCCCeEEEEeCCCCceee--eee-----
Q 014104 251 SSLGSIAISGLSSDQR-----VATLRSTDCTG-IKTLCYNPC--SRLVFAG-TTAGYASCWDLRTMKSLW--ETR----- 314 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~-----~~~~~~~~~~~-v~~~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~----- 314 (430)
++||+|.-|...-+.. ...+.....+. ...+++... +.+|+.+ -..++|.+||-.-.+... .+.
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP 186 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP 186 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence 9999999998542222 12222211222 334555433 5566544 457889999865332110 010
Q ss_pred cCCC-----------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 315 ISPN-----------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 315 ~~~~-----------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
..-. -|+-.. -.++.+.=+.|..-|.|-+||+. |..++++.....
T Consensus 187 agyAPFnIqnig~~lyVtYA~-qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~---------------------- 242 (336)
T TIGR03118 187 AGYAPFNVQNLGGTLYVTYAQ-QDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR---------------------- 242 (336)
T ss_pred CCCCCcceEEECCeEEEEEEe-cCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc----------------------
Confidence 0000 011111 22333333444556788888876 888887753211
Q ss_pred CCcccccCCCCCCCCeeEEEE--------cCeEEEEeeCCCeEEEEEecCCC
Q 014104 384 AGCCIDRIPKTIRPPITCLAV--------GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~--------~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
-..-+.|+. .+.+|+--=.||+|..+|..+++
T Consensus 243 ------------LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 243 ------------LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ------------ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 011222222 46667766678999999987765
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.61 E-value=44 Score=29.61 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=113.0
Q ss_pred eEEEec-CC-eEEEEeCCCeEEEEecC------CC-eeEEeeec------CCceeEEEEecCC-------------CEEE
Q 014104 116 DQCRMK-RG-LILTGVGDKVMRLWSLE------GY-KCVEEYSL------PNAASLVDFDFDE-------------SKIV 167 (430)
Q Consensus 116 ~~~~~~-~~-~l~s~~~dg~i~iwd~~------~~-~~~~~~~~------~~~~~~~~~~~~~-------------~~l~ 167 (430)
+.++++ .+ +-++...-+...+||.. .. .++-++.. +....-+.|+... ..|.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 457774 45 55555666889999986 11 22333332 1123334444221 1244
Q ss_pred EEeCCeEEEEEcCCCcc-------ccc-CCCCceeeeeEEEEc--CCceEE-EecCCeEEEEECCCCeeeEEeecCCC--
Q 014104 168 GLIGTRICIWRRNGLRS-------VFP-SREGTFMKGLCMRYF--DPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCA-- 234 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~-------~~~-~~~~~~~~~~~~~~~--~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~-- 234 (430)
++.+|+|.-|...-... ++. ...+.+-..+++... +..|+. --.+++|.++|-.-.+ +..-....+
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~DP~ 184 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFIDPA 184 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccCCC
Confidence 89999999999532211 121 123445555666544 233433 3456888888853222 111000000
Q ss_pred ------C--e------EEEEe---cCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEec------CCCE
Q 014104 235 ------P--V------TSLSL---SED-QLIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNP------CSRL 289 (430)
Q Consensus 235 ------~--i------~~~~~---~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~------~~~~ 289 (430)
+ | .-+.| .++ ..=+.|..-|.|-+||.. |+.++++.. ..-.....|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0 01111 111 122233445799999974 888888852 1223566677755 5678
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCC------CceEEEE
Q 014104 290 VFAGTTAGYASCWDLRTMKSLWETRISP------NVVYSLQ 324 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~l~ 324 (430)
|+---.||+|..||..+++.+..+.... ..++.+.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~ 304 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLT 304 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEee
Confidence 8877779999999999988777665433 3456666
No 491
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.25 E-value=56 Score=30.64 Aligned_cols=153 Identities=7% Similarity=-0.002 Sum_probs=0.0
Q ss_pred eEEEecCC-eEEEEeCCCeEEEEecC--CCeeEEeeec--CCceeEEEEecCCCEEE-EEeCCeEEEEEc---CCCcccc
Q 014104 116 DQCRMKRG-LILTGVGDKVMRLWSLE--GYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRICIWRR---NGLRSVF 186 (430)
Q Consensus 116 ~~~~~~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~---~~~~~~~ 186 (430)
+.+.|+|. ..+-+-..|.+.=|-+. +....-.+.. .+.+..+.|++|++.++ -..+.+|.+++. ++.....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Q ss_pred cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCC
Q 014104 187 PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~ 262 (430)
..+......+..+.+.+.. ++.-...|.=..=-....+.++..+.|+..|.-..|.++ -+++++-..+++.=+.++
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Q ss_pred CCceeE
Q 014104 263 SDQRVA 268 (430)
Q Consensus 263 ~~~~~~ 268 (430)
++...+
T Consensus 186 ~~~v~k 191 (657)
T KOG2377|consen 186 AGTMSK 191 (657)
T ss_pred eceeee
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.86 E-value=41 Score=28.87 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=74.6
Q ss_pred EEEEECCCCeeeEEeecCCC-CeEEEEecCC-CEEEEEeC-C--CeEEEEeCCC--Cce-eEEEec--CCCCCeEEEEEe
Q 014104 215 ARVFDMYSRKCSQIIRMHCA-PVTSLSLSED-QLIISGSS-L--GSIAISGLSS--DQR-VATLRS--TDCTGIKTLCYN 284 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~-~i~~~~~~~~-~~l~~~~~-d--g~i~vwd~~~--~~~-~~~~~~--~~~~~v~~~~~~ 284 (430)
-.+||+.+++.. .+..... ...+-.+.++ .++.+|+. + ..+++++..+ +.+ ...... .....--.+..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 347899887543 3322222 2222233344 77777764 2 3577887654 011 111100 022233344556
Q ss_pred cCCCEEEEEeCCCe-EEEEeCCC-Cceeeee--e-----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 285 PCSRLVFAGTTAGY-ASCWDLRT-MKSLWET--R-----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 285 ~~~~~l~~~~~dg~-i~i~d~~~-~~~~~~~--~-----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
|||+.|+.|+.... ..+|..+. ......+ . ......+-..+.-|+|+.++.+..+ -.|||..+.+.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 79999998887643 44444421 1111111 1 0112222233477999999888765 45668888877777
Q ss_pred EEeccC
Q 014104 356 CVMDIG 361 (430)
Q Consensus 356 ~~~~~~ 361 (430)
+..-++
T Consensus 205 lP~lPg 210 (243)
T PF07250_consen 205 LPDLPG 210 (243)
T ss_pred CCCCCC
Confidence 765444
No 493
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.77 E-value=7.9 Score=21.89 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.6
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
.++.++.+|.+.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466679999999999999999998874
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=78.61 E-value=68 Score=31.21 Aligned_cols=222 Identities=12% Similarity=0.114 Sum_probs=102.3
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcc---cccCCC-CceeeeeEEEEcC-CceEEEecCCe--EEEEECCCCeeeEEeecCC
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRS---VFPSRE-GTFMKGLCMRYFD-PEAVVGCEDGT--ARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~~-~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~ 233 (430)
++..++ +..+|.+....+..... +..... ......++....+ ..++.|+.-|. +.-+....-+.+..+. .-
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~ 299 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NW 299 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-Cc
Confidence 344444 89999999887765331 111111 2222222222222 14777776544 4445533344555555 45
Q ss_pred CCeEEEEecC----C-C------EEEEEe---CCCeEEEEeCCCCceeE--EEecC-CC--CCeEEEEEec-CCCEEEEE
Q 014104 234 APVTSLSLSE----D-Q------LIISGS---SLGSIAISGLSSDQRVA--TLRST-DC--TGIKTLCYNP-CSRLVFAG 293 (430)
Q Consensus 234 ~~i~~~~~~~----~-~------~l~~~~---~dg~i~vwd~~~~~~~~--~~~~~-~~--~~v~~~~~~~-~~~~l~~~ 293 (430)
+||.++++.+ + . .+++++ .+|.+++.. .|-... ..... .. ..+..+.... ++.+|+..
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 7898888852 1 2 555554 567888874 332222 11110 11 1333343322 24677777
Q ss_pred eCCCeEEEEeCC---CCceeeeeec-----CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCccee
Q 014104 294 TTAGYASCWDLR---TMKSLWETRI-----SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASS 365 (430)
Q Consensus 294 ~~dg~i~i~d~~---~~~~~~~~~~-----~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 365 (430)
..+. -+++.+. ..+.+.++.. ....+.+-. + . +..++=... ..|++.+...++....+....+
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~-~-~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~---- 448 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGN-V-G-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAG---- 448 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEE-E-T-TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS----
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEE-c-C-CCeEEEEec-CeEEEEECCCCeEEEEEeCCCC----
Confidence 6654 4455553 2333322211 111121111 2 1 333333332 3477787777777766654433
Q ss_pred eeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCC
Q 014104 366 SSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 366 ~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..|.+.+.++.+++.+-.++.+.++.++..
T Consensus 449 -------------------------------~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~ 478 (504)
T PF10433_consen 449 -------------------------------SIIVAASINDPQVLVALSGGELVYFELDDN 478 (504)
T ss_dssp ----------------------------------SEEEESSSEEEEEE-TTEEEEEEEETT
T ss_pred -------------------------------CeEEEEEECCCEEEEEEeCCcEEEEEEECC
Confidence 356666666666666666677777776543
No 495
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.59 E-value=26 Score=35.37 Aligned_cols=194 Identities=10% Similarity=0.094 Sum_probs=0.0
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEee----cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC-----CCceeEEEec
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-----SDQRVATLRS 272 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~ 272 (430)
..|.+..|+.++.+.++.-..+....... .....+.++.++++. +..|.-||++-.+--. .+.+-..+..
T Consensus 546 ~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S-lgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 546 PHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS-LGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred CCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc-cccCccCCccccccCCCCCCCCCCCcccccc
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
...+|...++..| ++.++.+|.|.++...+......+..|. ..|+.+. +..++=+++-.+.| .+++++.++
T Consensus 625 -g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~-~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 625 -GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHML-YLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred -CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEE-eeCCceEEEEcCCC-EEEEecccc
Q ss_pred CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 350 GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
-.-.+.+...+. ....++.+++ -.|+...+....+..++.++..-.--+.-.+
T Consensus 699 l~hlqd~niaT~---vt~~lP~~kl----------------------lsv~~rl~c~gl~~V~~~~~l~v~~~v~~~q 751 (925)
T KOG3522|consen 699 LWHLQDSNIATS---VTVDLPFGKL----------------------LSVPGRLWCQGLLMVLTSLTLLVALPVPRLQ 751 (925)
T ss_pred cCCccccccCcc---eeecCCCccc----------------------ccCCCcccccceeEEeccceeEEEeeeeecc
No 496
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.48 E-value=9.8 Score=21.49 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=24.4
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
.++.++.+|.|+-.|.++|+.+..+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 35667999999999999999999887643
No 497
>PLN02153 epithiospecifier protein
Probab=78.17 E-value=54 Score=29.86 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=45.0
Q ss_pred eEEEEECCCCeeeEEeecC--CCC----eEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeE--EEec---CCCCC
Q 014104 214 TARVFDMYSRKCSQIIRMH--CAP----VTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVA--TLRS---TDCTG 277 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~--~~~----i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~---~~~~~ 277 (430)
.+.+||+.+.+-. ..... ... -.+++...+.+++.|+.+ ..+.+||+.+.+-.. .+.. .....
T Consensus 51 ~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 51 DLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred cEEEEECCCCEEE-EcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 5788888765422 11111 001 012233356677777643 357889988755322 1100 01111
Q ss_pred eEEEEEecCCCEEEEEeCC-----------CeEEEEeCCCCc
Q 014104 278 IKTLCYNPCSRLVFAGTTA-----------GYASCWDLRTMK 308 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~ 308 (430)
-.+++. -++++.+.|+.+ ..+.+||..+.+
T Consensus 130 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred eeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 122222 355666666643 247788887653
No 498
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.09 E-value=10 Score=21.59 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.7
Q ss_pred EEEecCCeEEEEeCCCeEEEEecCC
Q 014104 117 QCRMKRGLILTGVGDKVMRLWSLEG 141 (430)
Q Consensus 117 ~~~~~~~~l~s~~~dg~i~iwd~~~ 141 (430)
.+.+.++.++.++.||.+...|.++
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 4456677888888888888888653
No 499
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=76.63 E-value=2.3 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCccCCcHHHHHHHhcCCChhhhHHH
Q 014104 22 ATIESLNGDIICMIFSSLGFFDLVRC 47 (430)
Q Consensus 22 ~~~~~Lp~e~~~~i~~~l~~~~l~~~ 47 (430)
..+..||.|+-.+|+++|+-.||...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 67889999999999999999998764
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.83 E-value=12 Score=21.10 Aligned_cols=29 Identities=7% Similarity=0.167 Sum_probs=18.5
Q ss_pred CCCCeEEEEEecCCCEEEEE-eCC--CeEEEE
Q 014104 274 DCTGIKTLCYNPCSRLVFAG-TTA--GYASCW 302 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~-~~d--g~i~i~ 302 (430)
....-....|+|||+.|+-. ..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34466788999999987744 444 555554
Done!