Query 014104
Match_columns 430
No_of_seqs 625 out of 4135
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:34:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.5E-51 2.9E-55 384.6 47.4 398 18-427 13-444 (445)
2 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-50 6.2E-55 381.0 38.0 364 19-427 6-416 (435)
3 3v7d_B Cell division control p 100.0 2E-48 6.8E-53 370.4 49.9 394 20-424 11-462 (464)
4 1vyh_C Platelet-activating fac 100.0 1.7E-45 5.7E-50 344.0 38.2 289 97-424 93-410 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 2.2E-44 7.7E-49 328.1 41.7 280 103-422 46-340 (340)
6 3ow8_A WD repeat-containing pr 100.0 3.2E-44 1.1E-48 324.0 39.4 283 104-424 24-320 (321)
7 3iz6_a 40S ribosomal protein R 100.0 1.8E-44 6.3E-49 333.7 36.4 295 101-430 55-380 (380)
8 2pbi_B Guanine nucleotide-bind 100.0 6.5E-43 2.2E-47 320.0 41.1 281 103-422 55-354 (354)
9 2ynn_A Coatomer subunit beta'; 100.0 1E-42 3.5E-47 312.0 39.6 284 104-426 5-303 (304)
10 1nr0_A Actin interacting prote 100.0 7.9E-42 2.7E-46 335.4 44.8 248 103-352 50-358 (611)
11 3frx_A Guanine nucleotide-bind 100.0 2.9E-41 9.8E-46 304.7 40.0 289 104-426 9-318 (319)
12 4gqb_B Methylosome protein 50; 100.0 4.3E-42 1.5E-46 312.4 34.2 278 109-426 27-332 (344)
13 4g56_B MGC81050 protein; prote 100.0 3.9E-42 1.3E-46 315.1 33.9 281 107-426 37-344 (357)
14 4ery_A WD repeat-containing pr 100.0 4.8E-41 1.6E-45 302.5 40.4 290 98-424 9-311 (312)
15 4aow_A Guanine nucleotide-bind 100.0 1.5E-40 5.3E-45 302.6 41.1 295 103-428 29-340 (340)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-40 4.5E-45 303.7 39.2 294 102-429 5-339 (345)
17 1nr0_A Actin interacting prote 100.0 1.1E-40 3.9E-45 327.2 40.9 317 103-424 181-610 (611)
18 1erj_A Transcriptional repress 100.0 3.5E-40 1.2E-44 306.5 40.9 281 107-427 59-391 (393)
19 2hes_X YDR267CP; beta-propelle 100.0 4.2E-40 1.4E-44 298.5 39.2 287 102-425 4-328 (330)
20 2ymu_A WD-40 repeat protein; u 100.0 1E-39 3.5E-44 318.9 43.3 310 100-422 250-577 (577)
21 2xzm_R RACK1; ribosome, transl 100.0 3.1E-39 1.1E-43 294.5 39.9 296 102-427 11-342 (343)
22 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-39 2.9E-43 287.6 41.8 285 100-428 6-299 (313)
23 1sq9_A Antiviral protein SKI8; 100.0 1.6E-39 5.5E-44 302.5 36.9 302 104-427 8-397 (397)
24 3zwl_B Eukaryotic translation 100.0 4E-38 1.4E-42 289.7 39.9 286 102-426 22-347 (369)
25 2ymu_A WD-40 repeat protein; u 100.0 5E-38 1.7E-42 307.0 42.8 312 100-424 209-538 (577)
26 3ow8_A WD repeat-containing pr 100.0 1.5E-38 5.2E-43 286.9 34.7 243 104-348 72-320 (321)
27 1r5m_A SIR4-interacting protei 100.0 2.8E-38 9.5E-43 296.4 37.8 313 107-424 40-424 (425)
28 3gre_A Serine/threonine-protei 100.0 2.2E-39 7.5E-44 305.6 30.4 321 98-422 48-437 (437)
29 3ei3_B DNA damage-binding prot 100.0 4.5E-38 1.5E-42 291.4 37.9 285 100-425 61-382 (383)
30 1k8k_C P40, ARP2/3 complex 41 100.0 7.4E-39 2.5E-43 295.2 32.2 314 107-429 3-365 (372)
31 1gxr_A ESG1, transducin-like e 100.0 4.8E-37 1.6E-41 279.0 40.4 278 104-424 43-336 (337)
32 3vl1_A 26S proteasome regulato 100.0 4.3E-38 1.5E-42 295.1 32.9 310 114-425 58-419 (420)
33 1vyh_C Platelet-activating fac 100.0 4.4E-38 1.5E-42 293.8 32.4 242 104-348 142-410 (410)
34 2pm9_A Protein WEB1, protein t 100.0 1.1E-38 3.9E-43 298.6 28.5 315 111-427 11-416 (416)
35 3i2n_A WD repeat-containing pr 100.0 1.5E-37 5.3E-42 284.7 35.4 305 103-428 9-356 (357)
36 2j04_B YDR362CP, TAU91; beta p 100.0 1E-38 3.4E-43 304.6 27.5 299 126-426 177-518 (524)
37 3dm0_A Maltose-binding peripla 100.0 6.2E-37 2.1E-41 305.4 41.1 304 99-424 369-692 (694)
38 4aez_A CDC20, WD repeat-contai 100.0 7.8E-37 2.7E-41 284.8 39.2 292 99-428 78-383 (401)
39 2ynn_A Coatomer subunit beta'; 100.0 4.6E-37 1.6E-41 275.3 36.1 246 143-427 4-261 (304)
40 4gqb_B Methylosome protein 50; 100.0 6.6E-37 2.3E-41 278.3 32.6 239 109-351 79-333 (344)
41 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-36 4.5E-41 322.2 39.5 318 104-427 607-1036(1249)
42 3dwl_C Actin-related protein 2 100.0 3.9E-38 1.3E-42 291.2 23.6 310 107-423 6-377 (377)
43 2pm7_B Protein transport prote 100.0 2.7E-36 9.3E-41 269.3 34.2 247 106-425 3-285 (297)
44 3k26_A Polycomb protein EED; W 100.0 8.5E-37 2.9E-41 280.6 31.3 281 107-425 13-366 (366)
45 3mkq_A Coatomer beta'-subunit; 100.0 9.3E-36 3.2E-40 302.6 41.8 267 104-372 5-282 (814)
46 1pgu_A Actin interacting prote 100.0 9.3E-36 3.2E-40 292.9 40.2 316 103-426 151-615 (615)
47 3frx_A Guanine nucleotide-bind 100.0 6.1E-36 2.1E-40 269.8 35.3 243 103-350 56-318 (319)
48 1got_B GT-beta; complex (GTP-b 100.0 8.9E-36 3E-40 271.3 36.0 248 143-427 46-303 (340)
49 2oaj_A Protein SNI1; WD40 repe 100.0 4.5E-36 1.5E-40 305.2 37.7 203 107-311 12-247 (902)
50 4a11_B DNA excision repair pro 100.0 6.4E-36 2.2E-40 278.9 35.3 289 103-428 34-368 (408)
51 4e54_B DNA damage-binding prot 100.0 6.7E-37 2.3E-41 288.3 28.8 286 105-428 112-433 (435)
52 1yfq_A Cell cycle arrest prote 100.0 9.2E-36 3.1E-40 271.3 33.0 276 107-422 6-321 (342)
53 4h5i_A Guanine nucleotide-exch 100.0 4.3E-35 1.5E-39 269.0 36.8 276 113-426 15-344 (365)
54 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-35 1.4E-39 298.1 39.7 316 109-427 55-607 (902)
55 4gga_A P55CDC, cell division c 100.0 7.3E-35 2.5E-39 273.2 37.7 272 114-426 107-396 (420)
56 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-35 2.6E-39 308.8 41.5 320 104-428 649-1161(1249)
57 1erj_A Transcriptional repress 100.0 6E-35 2E-39 271.2 34.4 234 114-349 125-389 (393)
58 4g56_B MGC81050 protein; prote 100.0 1.5E-35 5.1E-40 271.3 28.5 242 107-352 89-346 (357)
59 1pgu_A Actin interacting prote 100.0 5.2E-35 1.8E-39 287.6 33.9 306 110-425 16-402 (615)
60 2xzm_R RACK1; ribosome, transl 100.0 2E-34 6.8E-39 262.7 34.7 243 103-350 67-341 (343)
61 3bg1_A Protein SEC13 homolog; 100.0 1.5E-35 5.1E-40 266.9 26.5 243 107-425 8-293 (316)
62 2pbi_B Guanine nucleotide-bind 100.0 3.9E-34 1.3E-38 261.7 35.7 249 143-428 55-318 (354)
63 4ggc_A P55CDC, cell division c 100.0 7.7E-34 2.6E-38 255.8 37.1 272 115-427 28-317 (318)
64 1gxr_A ESG1, transducin-like e 100.0 4.4E-34 1.5E-38 259.4 35.2 278 111-428 8-299 (337)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.5E-34 1.9E-38 269.3 36.2 277 141-428 107-394 (445)
66 3vl1_A 26S proteasome regulato 100.0 8.4E-35 2.9E-39 272.7 30.2 269 155-426 60-366 (420)
67 3iz6_a 40S ribosomal protein R 100.0 2.4E-35 8.2E-40 272.6 26.1 263 134-427 48-331 (380)
68 3dw8_B Serine/threonine-protei 100.0 5.9E-34 2E-38 269.2 35.8 305 110-424 26-445 (447)
69 4ery_A WD repeat-containing pr 100.0 1.3E-33 4.6E-38 253.8 36.2 249 143-427 14-270 (312)
70 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-34 1.6E-38 260.3 32.1 262 142-426 5-284 (345)
71 3jrp_A Fusion protein of prote 100.0 4.4E-34 1.5E-38 263.7 32.0 252 104-426 3-288 (379)
72 3f3f_A Nucleoporin SEH1; struc 100.0 7.7E-34 2.6E-38 258.7 33.0 280 107-428 6-340 (351)
73 2hes_X YDR267CP; beta-propelle 100.0 1.6E-33 5.4E-38 255.2 32.6 252 141-426 3-281 (330)
74 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-33 8.7E-38 256.4 33.8 300 104-427 11-338 (355)
75 3mmy_A MRNA export factor; mRN 100.0 1.5E-33 5.3E-38 258.9 32.1 284 102-424 29-345 (368)
76 3gre_A Serine/threonine-protei 100.0 1.6E-34 5.5E-39 272.4 26.0 279 136-428 47-362 (437)
77 3v7d_B Cell division control p 100.0 8.7E-33 3E-37 262.6 36.3 261 103-369 153-442 (464)
78 1r5m_A SIR4-interacting protei 100.0 1.2E-32 3.9E-37 258.2 35.0 259 111-374 107-408 (425)
79 4aow_A Guanine nucleotide-bind 100.0 2.8E-32 9.4E-37 248.0 36.3 244 104-351 78-339 (340)
80 3zwl_B Eukaryotic translation 100.0 4.3E-32 1.5E-36 249.3 35.5 249 102-353 64-350 (369)
81 4gga_A P55CDC, cell division c 100.0 3.3E-32 1.1E-36 255.1 34.9 248 107-359 142-405 (420)
82 3dm0_A Maltose-binding peripla 100.0 3.5E-32 1.2E-36 271.2 35.1 240 105-348 423-692 (694)
83 1sq9_A Antiviral protein SKI8; 100.0 1.6E-32 5.4E-37 255.3 30.3 246 104-351 54-397 (397)
84 3mkq_A Coatomer beta'-subunit; 100.0 6.1E-32 2.1E-36 274.5 36.9 248 101-351 44-304 (814)
85 2pm9_A Protein WEB1, protein t 100.0 6.1E-33 2.1E-37 259.6 26.8 241 110-352 65-340 (416)
86 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-32 1.9E-36 254.8 31.2 245 103-356 164-421 (435)
87 1k8k_C P40, ARP2/3 complex 41 100.0 5.1E-32 1.7E-36 249.4 29.9 246 104-351 44-363 (372)
88 3k26_A Polycomb protein EED; W 100.0 1.3E-32 4.6E-37 252.5 25.6 235 111-348 68-365 (366)
89 4aez_A CDC20, WD repeat-contai 100.0 2.5E-31 8.6E-36 247.6 33.8 247 105-357 126-388 (401)
90 2w18_A PALB2, fancn, partner a 100.0 8.1E-31 2.8E-35 229.8 34.7 280 103-424 26-356 (356)
91 3jro_A Fusion protein of prote 100.0 1.9E-32 6.5E-37 274.7 27.5 252 105-427 2-287 (753)
92 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-32 1.1E-36 248.0 26.5 237 121-427 46-294 (343)
93 2xyi_A Probable histone-bindin 100.0 2.6E-31 8.8E-36 249.7 32.9 261 102-425 118-410 (430)
94 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-32 4.8E-37 262.2 24.2 226 161-425 171-428 (524)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 8.7E-32 3E-36 250.8 29.2 274 114-426 36-343 (402)
96 3i2n_A WD repeat-containing pr 100.0 8.7E-32 3E-36 246.4 28.5 242 108-352 61-356 (357)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.4E-31 2.5E-35 248.2 35.7 276 112-426 4-392 (450)
98 4ggc_A P55CDC, cell division c 100.0 1.8E-30 6E-35 233.8 34.8 241 107-351 62-317 (318)
99 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-30 4.8E-35 233.8 33.2 247 102-357 49-304 (313)
100 4h5i_A Guanine nucleotide-exch 100.0 2.5E-31 8.6E-36 244.0 28.7 241 107-350 68-344 (365)
101 3ei3_B DNA damage-binding prot 100.0 4.6E-31 1.6E-35 244.3 29.6 259 137-428 58-342 (383)
102 1l0q_A Surface layer protein; 100.0 3.1E-29 1.1E-33 232.6 41.2 255 101-361 21-287 (391)
103 1l0q_A Surface layer protein; 100.0 9.4E-30 3.2E-34 236.1 37.4 262 124-427 4-277 (391)
104 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-31 7.7E-36 248.2 25.2 257 110-424 13-296 (588)
105 3dwl_C Actin-related protein 2 100.0 8.8E-32 3E-36 248.5 22.3 234 151-424 11-280 (377)
106 4a11_B DNA excision repair pro 100.0 2.6E-30 9E-35 240.9 30.6 247 110-358 97-374 (408)
107 4e54_B DNA damage-binding prot 100.0 1E-30 3.5E-35 246.1 25.1 246 105-353 157-434 (435)
108 3dw8_B Serine/threonine-protei 100.0 6.9E-31 2.4E-35 248.1 23.7 255 150-428 27-376 (447)
109 1yfq_A Cell cycle arrest prote 100.0 6.3E-30 2.2E-34 232.7 27.8 244 152-428 12-285 (342)
110 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-31 4.7E-36 249.6 16.7 307 80-414 12-350 (588)
111 3vu4_A KMHSV2; beta-propeller 100.0 9.1E-30 3.1E-34 232.8 28.4 246 136-426 3-272 (355)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-29 5.6E-34 235.4 29.1 237 155-428 38-302 (402)
113 2pm7_B Protein transport prote 100.0 2.9E-29 9.8E-34 223.8 28.6 192 197-426 15-239 (297)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5E-29 1.7E-33 235.6 31.0 258 152-423 5-337 (450)
115 3bws_A Protein LP49; two-domai 100.0 5E-28 1.7E-32 227.6 36.1 280 103-425 114-432 (433)
116 4gq1_A NUP37; propeller, trans 100.0 1.1E-28 3.7E-33 228.9 30.9 228 160-424 98-388 (393)
117 3bg1_A Protein SEC13 homolog; 100.0 3.4E-29 1.1E-33 225.4 24.9 205 104-348 49-292 (316)
118 3mmy_A MRNA export factor; mRN 100.0 2.1E-28 7E-33 224.7 28.8 242 103-348 77-345 (368)
119 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5E-32 209.3 29.2 173 171-347 156-355 (356)
120 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-27 9.2E-32 215.3 29.3 226 103-358 48-346 (351)
121 3jrp_A Fusion protein of prote 100.0 2E-27 6.8E-32 219.1 28.7 192 202-427 22-242 (379)
122 1nir_A Nitrite reductase; hemo 100.0 5.9E-26 2E-30 218.2 37.0 302 121-428 147-517 (543)
123 3lrv_A PRE-mRNA-splicing facto 100.0 6.8E-27 2.3E-31 212.9 27.5 207 112-352 76-295 (343)
124 4gq1_A NUP37; propeller, trans 100.0 3.4E-27 1.2E-31 218.8 21.9 234 111-348 88-388 (393)
125 3bws_A Protein LP49; two-domai 100.0 1.7E-25 5.8E-30 210.3 32.3 236 108-348 165-431 (433)
126 2xyi_A Probable histone-bindin 99.9 9.5E-26 3.2E-30 211.8 27.5 208 102-350 171-411 (430)
127 3jro_A Fusion protein of prote 99.9 7E-26 2.4E-30 227.1 26.3 206 103-350 44-286 (753)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.7E-24 1.6E-28 198.9 28.1 272 111-426 61-388 (415)
129 1pby_B Quinohemoprotein amine 99.9 1.2E-23 4E-28 190.7 27.6 260 124-428 3-313 (337)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-23 5.3E-28 195.4 27.5 257 106-370 111-407 (415)
131 3u4y_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 180.4 33.9 269 124-426 12-305 (331)
132 3vgz_A Uncharacterized protein 99.9 1.5E-21 5E-26 178.1 35.2 245 111-358 39-312 (353)
133 1nir_A Nitrite reductase; hemo 99.9 7.9E-22 2.7E-26 189.5 32.8 268 104-375 171-493 (543)
134 1ri6_A Putative isomerase YBHE 99.9 9.8E-22 3.4E-26 178.4 31.2 262 124-424 7-307 (343)
135 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-22 8.3E-27 201.8 29.5 243 112-358 36-376 (741)
136 1k32_A Tricorn protease; prote 99.9 1.2E-21 4.1E-26 203.6 35.0 263 104-374 195-485 (1045)
137 2ojh_A Uncharacterized protein 99.9 1E-21 3.4E-26 174.2 27.9 223 127-354 17-263 (297)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 6.8E-26 194.1 31.6 237 113-351 82-393 (706)
139 1k32_A Tricorn protease; prote 99.9 1.3E-21 4.3E-26 203.4 30.7 309 106-427 239-639 (1045)
140 1pby_B Quinohemoprotein amine 99.9 1.6E-20 5.6E-25 169.9 29.7 252 103-361 22-322 (337)
141 3vgz_A Uncharacterized protein 99.9 4E-20 1.4E-24 168.5 31.8 209 148-358 37-271 (353)
142 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-21 9.2E-26 193.2 25.6 256 98-360 13-354 (706)
143 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.9E-24 164.7 34.1 243 108-352 33-313 (343)
144 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-20 4.1E-25 171.7 27.7 235 118-359 5-335 (349)
145 3u4y_A Uncharacterized protein 99.9 4.1E-20 1.4E-24 167.1 30.4 245 103-351 31-306 (331)
146 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-20 3.7E-25 189.9 28.6 256 114-373 110-437 (741)
147 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-21 8.3E-26 194.0 23.4 230 114-346 18-341 (723)
148 3o4h_A Acylamino-acid-releasin 99.9 1.3E-20 4.5E-25 183.8 27.4 231 112-353 21-278 (582)
149 2ojh_A Uncharacterized protein 99.9 2.2E-20 7.5E-25 165.5 24.6 233 104-340 33-293 (297)
150 3hfq_A Uncharacterized protein 99.9 1.4E-18 4.7E-23 158.2 33.8 258 130-424 14-316 (347)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-19 8.7E-24 167.5 24.4 140 208-350 113-279 (434)
152 3scy_A Hypothetical bacterial 99.8 1.7E-17 5.7E-22 151.9 35.2 262 124-424 15-336 (361)
153 1z68_A Fibroblast activation p 99.8 9E-20 3.1E-24 182.5 21.7 233 117-351 20-348 (719)
154 1jmx_B Amine dehydrogenase; ox 99.8 2.7E-19 9.1E-24 162.7 22.8 226 158-428 6-328 (349)
155 3hfq_A Uncharacterized protein 99.8 7.6E-18 2.6E-22 153.2 32.4 247 107-354 34-324 (347)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-20 1.2E-24 173.4 16.7 200 194-426 39-279 (434)
157 1xfd_A DIP, dipeptidyl aminope 99.8 6.2E-19 2.1E-23 176.6 24.4 270 104-375 49-424 (723)
158 3scy_A Hypothetical bacterial 99.8 1.6E-16 5.6E-21 145.2 32.9 240 111-354 48-344 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.1E-17 3.1E-21 147.1 31.1 267 124-426 4-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.8 3.2E-18 1.1E-22 167.0 22.3 255 152-425 22-313 (582)
161 3pe7_A Oligogalacturonate lyas 99.8 4.3E-17 1.5E-21 150.5 27.1 296 102-427 20-384 (388)
162 1z68_A Fibroblast activation p 99.8 2.3E-18 8E-23 172.2 19.1 243 104-349 48-391 (719)
163 2oiz_A Aromatic amine dehydrog 99.8 2.1E-16 7.3E-21 144.1 27.7 262 103-372 42-359 (361)
164 3dsm_A Uncharacterized protein 99.8 1.4E-15 4.6E-20 137.0 31.2 241 114-361 45-313 (328)
165 4a5s_A Dipeptidyl peptidase 4 99.8 2.1E-16 7.2E-21 158.3 28.4 236 114-353 18-357 (740)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-16 7.7E-21 144.5 25.7 238 111-350 38-342 (365)
167 3fvz_A Peptidyl-glycine alpha- 99.8 1.6E-15 5.4E-20 136.7 30.5 186 206-426 105-323 (329)
168 3azo_A Aminopeptidase; POP fam 99.8 3.9E-16 1.3E-20 154.6 28.6 247 107-357 18-332 (662)
169 1qks_A Cytochrome CD1 nitrite 99.8 2.8E-14 9.6E-19 136.8 39.1 302 124-427 169-540 (567)
170 1q7f_A NHL, brain tumor CG1071 99.8 1.9E-14 6.5E-19 126.9 35.3 237 110-427 27-282 (286)
171 3c5m_A Oligogalacturonate lyas 99.7 6.7E-16 2.3E-20 142.8 23.2 243 104-352 22-332 (396)
172 3no2_A Uncharacterized protein 99.7 3.4E-15 1.2E-19 130.6 26.0 234 121-361 4-264 (276)
173 2oiz_A Aromatic amine dehydrog 99.7 1.8E-15 6.3E-20 137.9 25.1 254 130-426 29-335 (361)
174 3dsm_A Uncharacterized protein 99.7 4.5E-15 1.5E-19 133.6 26.7 254 130-427 15-303 (328)
175 2gop_A Trilobed protease; beta 99.7 6.1E-15 2.1E-19 133.9 27.8 253 114-424 16-330 (347)
176 3pe7_A Oligogalacturonate lyas 99.7 9.8E-15 3.3E-19 134.7 26.9 214 136-353 14-277 (388)
177 4a5s_A Dipeptidyl peptidase 4 99.7 5E-15 1.7E-19 148.3 23.0 194 154-351 19-296 (740)
178 2z2n_A Virginiamycin B lyase; 99.7 6.3E-12 2.2E-16 111.2 38.5 239 106-351 8-256 (299)
179 3c5m_A Oligogalacturonate lyas 99.7 1.2E-14 4.3E-19 134.2 21.4 216 136-354 14-278 (396)
180 3azo_A Aminopeptidase; POP fam 99.6 1.9E-13 6.4E-18 135.4 29.9 246 104-354 59-374 (662)
181 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.7E-18 136.7 29.7 239 111-351 123-416 (710)
182 3e5z_A Putative gluconolactona 99.6 3.4E-13 1.2E-17 119.5 27.3 243 98-351 13-288 (296)
183 2xdw_A Prolyl endopeptidase; a 99.6 3.3E-13 1.1E-17 134.6 29.6 205 154-361 127-380 (710)
184 2mad_H Methylamine dehydrogena 99.6 5.4E-12 1.8E-16 115.1 34.9 251 133-428 48-353 (373)
185 3q7m_A Lipoprotein YFGL, BAMB; 99.6 1.3E-12 4.4E-17 120.0 30.7 262 118-422 99-375 (376)
186 1rwi_B Serine/threonine-protei 99.6 4.4E-13 1.5E-17 116.9 25.7 236 114-351 25-266 (270)
187 2dg1_A DRP35, lactonase; beta 99.6 6.3E-13 2.2E-17 119.8 27.3 238 113-358 6-271 (333)
188 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.9E-18 137.5 24.4 244 110-358 118-405 (695)
189 1rwi_B Serine/threonine-protei 99.6 4.9E-13 1.7E-17 116.6 24.9 236 153-428 25-267 (270)
190 3q7m_A Lipoprotein YFGL, BAMB; 99.6 2.2E-12 7.6E-17 118.4 30.5 267 118-428 49-340 (376)
191 2bkl_A Prolyl endopeptidase; m 99.6 8.2E-13 2.8E-17 131.4 29.1 214 154-372 123-374 (695)
192 3no2_A Uncharacterized protein 99.6 2.6E-13 8.8E-18 118.6 22.3 148 206-359 8-164 (276)
193 1kb0_A Quinohemoprotein alcoho 99.6 1.3E-12 4.5E-17 128.6 28.7 271 120-429 75-511 (677)
194 3e5z_A Putative gluconolactona 99.6 4.1E-12 1.4E-16 112.5 29.3 199 152-358 28-254 (296)
195 3sjl_D Methylamine dehydrogena 99.6 4.1E-12 1.4E-16 114.5 28.6 265 121-428 42-366 (386)
196 1yiq_A Quinohemoprotein alcoho 99.6 1.9E-12 6.6E-17 127.7 28.9 273 120-429 68-509 (689)
197 1q7f_A NHL, brain tumor CG1071 99.6 4.8E-12 1.7E-16 111.4 28.5 194 111-350 75-281 (286)
198 2dg1_A DRP35, lactonase; beta 99.6 2.4E-11 8.1E-16 109.5 33.4 236 102-340 34-301 (333)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.4E-12 2.9E-16 111.3 29.3 237 108-349 13-299 (314)
200 3sjl_D Methylamine dehydrogena 99.6 7.8E-12 2.7E-16 112.7 28.5 250 104-360 71-374 (386)
201 2mad_H Methylamine dehydrogena 99.5 6.6E-11 2.3E-15 107.9 34.6 243 105-356 60-357 (373)
202 2hz6_A Endoplasmic reticulum t 99.5 2.3E-15 8E-20 137.6 4.2 255 120-425 7-279 (369)
203 2qc5_A Streptogramin B lactona 99.5 2.7E-10 9.2E-15 100.6 37.0 248 98-352 5-262 (300)
204 1qks_A Cytochrome CD1 nitrite 99.5 2.1E-11 7E-16 117.0 30.9 242 114-358 198-547 (567)
205 3c75_H MADH, methylamine dehyd 99.5 8.5E-12 2.9E-16 114.5 26.2 256 132-428 99-405 (426)
206 2gop_A Trilobed protease; beta 99.5 4.8E-12 1.6E-16 114.7 23.8 217 113-351 59-332 (347)
207 3fvz_A Peptidyl-glycine alpha- 99.5 5.9E-12 2E-16 113.3 23.7 205 152-375 24-254 (329)
208 1kb0_A Quinohemoprotein alcoho 99.5 9.6E-11 3.3E-15 115.4 32.9 242 118-361 124-519 (677)
209 3hrp_A Uncharacterized protein 99.5 1.3E-10 4.5E-15 107.4 31.4 241 102-347 105-408 (409)
210 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.6E-16 124.3 25.8 238 111-351 161-443 (741)
211 1yr2_A Prolyl oligopeptidase; 99.5 8E-12 2.7E-16 125.1 24.9 201 153-358 164-403 (741)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.8E-11 2E-15 105.9 28.0 233 152-425 18-299 (314)
213 1yiq_A Quinohemoprotein alcoho 99.5 3.8E-11 1.3E-15 118.5 29.1 255 119-375 118-532 (689)
214 3hxj_A Pyrrolo-quinoline quino 99.5 7.4E-12 2.5E-16 112.6 20.8 294 116-426 23-325 (330)
215 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.8E-16 112.2 20.9 171 153-337 39-232 (388)
216 2z2n_A Virginiamycin B lyase; 99.4 1.1E-09 3.9E-14 96.6 32.2 233 110-351 54-297 (299)
217 3c75_H MADH, methylamine dehyd 99.4 1.3E-10 4.4E-15 106.7 26.6 235 117-356 122-409 (426)
218 1kv9_A Type II quinohemoprotei 99.4 1E-10 3.6E-15 115.0 27.7 192 120-313 64-340 (668)
219 3hrp_A Uncharacterized protein 99.4 2.2E-10 7.6E-15 105.9 28.4 245 153-424 132-409 (409)
220 2ad6_A Methanol dehydrogenase 99.4 1.5E-09 5.2E-14 104.6 30.6 192 120-314 60-343 (571)
221 3g4e_A Regucalcin; six bladed 99.4 1.4E-09 4.7E-14 96.2 28.0 222 111-338 11-261 (297)
222 2hz6_A Endoplasmic reticulum t 99.3 1.7E-13 5.7E-18 125.3 1.7 149 202-358 8-158 (369)
223 1w6s_A Methanol dehydrogenase 99.3 2.2E-09 7.4E-14 103.5 30.1 194 120-314 60-350 (599)
224 1mda_H Methylamine dehydrogena 99.3 1.4E-10 4.8E-15 104.7 20.2 245 103-361 57-358 (368)
225 2qc5_A Streptogramin B lactona 99.3 6.8E-09 2.3E-13 91.5 30.6 196 152-353 20-221 (300)
226 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 1E-12 3.4E-17 82.5 4.0 50 18-67 3-52 (53)
227 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.7E-14 95.2 26.9 201 154-361 15-241 (297)
228 1flg_A Protein (quinoprotein e 99.3 6.2E-09 2.1E-13 100.4 32.3 195 120-315 66-364 (582)
229 3iuj_A Prolyl endopeptidase; h 99.3 5.8E-10 2E-14 110.7 25.8 236 110-352 126-408 (693)
230 1xip_A Nucleoporin NUP159; bet 99.3 5.7E-11 1.9E-15 107.5 16.7 148 194-356 40-200 (388)
231 2ghs_A AGR_C_1268P; regucalcin 99.3 9.2E-09 3.1E-13 92.2 28.7 214 115-337 51-290 (326)
232 2ad6_A Methanol dehydrogenase 99.3 1.3E-08 4.3E-13 98.2 30.9 240 118-360 111-505 (571)
233 3hxj_A Pyrrolo-quinoline quino 99.3 4.4E-10 1.5E-14 100.8 19.5 249 111-376 58-310 (330)
234 3dr2_A Exported gluconolactona 99.2 5.1E-09 1.8E-13 92.9 25.5 232 101-341 33-299 (305)
235 1mda_H Methylamine dehydrogena 99.2 7.2E-10 2.5E-14 100.1 19.6 246 133-428 47-349 (368)
236 2ghs_A AGR_C_1268P; regucalcin 99.2 2.6E-08 8.8E-13 89.2 29.0 196 155-359 52-269 (326)
237 3nol_A Glutamine cyclotransfer 99.2 9.7E-09 3.3E-13 86.5 24.2 189 105-296 34-245 (262)
238 1kv9_A Type II quinohemoprotei 99.2 1E-07 3.4E-12 93.8 34.9 240 119-360 114-499 (668)
239 3mbr_X Glutamine cyclotransfer 99.2 2.2E-08 7.5E-13 83.7 25.2 189 104-295 11-223 (243)
240 3iuj_A Prolyl endopeptidase; h 99.2 6.3E-09 2.1E-13 103.2 25.8 197 154-357 131-366 (693)
241 1w6s_A Methanol dehydrogenase 99.2 1E-07 3.6E-12 91.8 32.0 234 125-361 124-515 (599)
242 2iwa_A Glutamine cyclotransfer 99.2 6.7E-08 2.3E-12 82.5 26.8 202 104-307 11-238 (266)
243 2qe8_A Uncharacterized protein 99.2 4.6E-08 1.6E-12 88.3 27.4 200 152-352 17-281 (343)
244 3nok_A Glutaminyl cyclase; bet 99.1 1.6E-08 5.4E-13 85.2 21.5 187 105-295 46-254 (268)
245 3dr2_A Exported gluconolactona 99.1 4.6E-08 1.6E-12 86.7 24.7 197 151-358 44-275 (305)
246 1fwx_A Nitrous oxide reductase 99.1 5.1E-08 1.8E-12 91.7 24.9 246 124-374 17-401 (595)
247 1flg_A Protein (quinoprotein e 99.1 1E-07 3.6E-12 91.9 26.8 240 119-361 114-528 (582)
248 2iwa_A Glutamine cyclotransfer 99.1 2.5E-07 8.7E-12 78.9 26.0 205 142-349 9-237 (266)
249 3nok_A Glutaminyl cyclase; bet 99.1 3.6E-07 1.2E-11 77.0 26.2 147 206-359 68-220 (268)
250 4a2l_A BT_4663, two-component 99.0 4.6E-06 1.6E-10 84.1 39.4 305 115-426 175-527 (795)
251 2ece_A 462AA long hypothetical 99.0 1.6E-07 5.6E-12 85.3 25.6 196 161-358 93-364 (462)
252 2ece_A 462AA long hypothetical 99.0 3.9E-07 1.3E-11 82.8 26.6 212 124-337 98-399 (462)
253 4a2l_A BT_4663, two-component 99.0 6.6E-06 2.3E-10 83.0 38.1 236 112-352 214-483 (795)
254 3l2o_B F-box only protein 4; s 99.0 1.9E-10 6.6E-15 97.0 3.2 52 21-72 2-53 (312)
255 3nol_A Glutamine cyclotransfer 99.0 9.7E-07 3.3E-11 74.4 25.0 190 143-338 32-244 (262)
256 2qe8_A Uncharacterized protein 98.9 8.8E-08 3E-12 86.4 20.1 221 110-346 64-318 (343)
257 1npe_A Nidogen, entactin; glyc 98.9 1.1E-05 3.8E-10 69.7 32.5 231 124-359 3-248 (267)
258 1fwx_A Nitrous oxide reductase 98.9 6E-08 2E-12 91.3 18.0 227 122-352 100-434 (595)
259 3mbr_X Glutamine cyclotransfer 98.9 4.3E-06 1.5E-10 69.9 26.4 190 142-337 9-222 (243)
260 3v9f_A Two-component system se 98.9 8.4E-06 2.9E-10 82.1 33.5 234 113-351 258-526 (781)
261 1npe_A Nidogen, entactin; glyc 98.9 9.9E-06 3.4E-10 70.0 29.1 182 165-349 3-198 (267)
262 3v9f_A Two-component system se 98.8 3.9E-05 1.3E-09 77.2 36.9 308 113-425 163-524 (781)
263 2e31_A FBS1, F-box only protei 98.8 4.3E-09 1.5E-13 90.2 5.3 68 21-88 48-120 (297)
264 2fp8_A Strictosidine synthase; 98.8 1.1E-05 3.7E-10 71.9 27.8 235 154-426 21-314 (322)
265 3v65_B Low-density lipoprotein 98.6 0.00019 6.4E-09 65.6 31.4 240 115-358 79-327 (386)
266 3v64_C Agrin; beta propeller, 98.6 0.00023 7.8E-09 64.0 30.9 242 113-358 34-284 (349)
267 2p4o_A Hypothetical protein; p 98.6 9.6E-05 3.3E-09 65.2 26.9 228 104-340 24-279 (306)
268 2fp8_A Strictosidine synthase; 98.6 9.1E-05 3.1E-09 65.8 26.6 233 108-348 14-312 (322)
269 3v64_C Agrin; beta propeller, 98.5 0.00048 1.6E-08 61.9 30.4 183 165-349 46-234 (349)
270 1ijq_A LDL receptor, low-densi 98.5 0.00053 1.8E-08 60.6 32.4 187 166-356 4-201 (316)
271 3v65_B Low-density lipoprotein 98.5 0.00043 1.5E-08 63.1 29.8 184 164-349 88-277 (386)
272 1k3i_A Galactose oxidase precu 98.4 1.7E-05 5.9E-10 78.0 20.5 228 122-351 197-499 (656)
273 1ijq_A LDL receptor, low-densi 98.4 0.00082 2.8E-08 59.4 33.2 223 132-358 10-247 (316)
274 3p5b_L Low density lipoprotein 98.4 0.0012 4.2E-08 60.4 34.2 120 234-356 159-283 (400)
275 3sov_A LRP-6, low-density lipo 98.3 0.0014 4.9E-08 57.8 28.5 225 131-358 12-247 (318)
276 2p4o_A Hypothetical protein; p 98.3 0.0014 4.9E-08 57.5 27.6 205 141-352 21-244 (306)
277 1k3i_A Galactose oxidase precu 98.2 7.4E-05 2.5E-09 73.5 19.6 200 150-351 184-443 (656)
278 3amr_A 3-phytase; beta-propell 98.2 0.0014 4.9E-08 57.6 25.2 194 163-361 40-276 (355)
279 3sov_A LRP-6, low-density lipo 98.2 0.0027 9.2E-08 56.1 28.8 180 166-348 7-196 (318)
280 3amr_A 3-phytase; beta-propell 98.2 0.00083 2.8E-08 59.2 22.7 137 206-348 43-209 (355)
281 3m0c_C LDL receptor, low-densi 98.2 0.0075 2.6E-07 60.1 32.8 231 124-358 397-641 (791)
282 4hw6_A Hypothetical protein, I 98.2 0.0032 1.1E-07 58.2 27.5 248 154-424 141-432 (433)
283 3qqz_A Putative uncharacterize 98.1 0.0028 9.6E-08 53.6 24.6 197 106-305 20-252 (255)
284 3tc9_A Hypothetical hydrolase; 98.1 0.0036 1.2E-07 57.9 26.2 228 116-348 140-429 (430)
285 2xe4_A Oligopeptidase B; hydro 98.1 0.0012 4E-08 66.0 24.2 232 114-352 175-461 (751)
286 3tc9_A Hypothetical hydrolase; 98.0 0.007 2.4E-07 55.9 27.5 150 154-305 139-300 (430)
287 2xe4_A Oligopeptidase B; hydro 98.0 0.0016 5.6E-08 64.9 24.4 191 154-347 176-398 (751)
288 4hw6_A Hypothetical protein, I 98.0 0.0065 2.2E-07 56.2 26.7 229 115-348 141-432 (433)
289 3m0c_C LDL receptor, low-densi 98.0 0.016 5.3E-07 57.8 31.6 189 165-356 397-595 (791)
290 2xbg_A YCF48-like protein; pho 98.0 0.0084 2.9E-07 53.2 34.1 266 111-422 34-319 (327)
291 1n7d_A LDL receptor, low-densi 97.9 0.00014 4.9E-09 71.7 14.8 225 131-358 385-623 (699)
292 3ei3_A DNA damage-binding prot 97.9 0.033 1.1E-06 58.0 37.8 177 112-294 553-755 (1158)
293 2xzh_A Clathrin heavy chain 1; 97.8 0.012 4.1E-07 51.0 29.2 230 132-368 49-309 (365)
294 3qqz_A Putative uncharacterize 97.8 0.011 3.7E-07 50.0 23.3 193 152-348 27-252 (255)
295 2xzh_A Clathrin heavy chain 1; 97.8 0.013 4.5E-07 50.8 29.2 218 130-350 85-333 (365)
296 2vpj_A Kelch-like protein 12; 97.8 0.0076 2.6E-07 52.6 22.1 215 132-351 31-280 (301)
297 4a0p_A LRP6, LRP-6, low-densit 97.8 0.035 1.2E-06 53.9 31.4 229 123-357 7-245 (628)
298 2be1_A Serine/threonine-protei 97.8 0.00085 2.9E-08 59.3 15.1 187 122-311 10-236 (339)
299 2ast_B S-phase kinase-associat 97.7 9.3E-06 3.2E-10 72.8 2.4 49 19-67 4-52 (336)
300 2vpj_A Kelch-like protein 12; 97.7 0.0096 3.3E-07 51.9 21.8 174 173-351 32-233 (301)
301 2p9w_A MAL S 1 allergenic prot 97.7 0.019 6.5E-07 50.1 23.0 150 198-349 19-215 (334)
302 4a0p_A LRP6, LRP-6, low-densit 97.7 0.039 1.3E-06 53.6 33.2 184 165-351 8-199 (628)
303 1n7d_A LDL receptor, low-densi 97.7 0.00019 6.6E-09 70.8 11.6 179 167-348 381-570 (699)
304 1bpo_A Protein (clathrin); cla 97.7 0.025 8.6E-07 51.1 30.2 219 130-351 84-333 (494)
305 2xn4_A Kelch-like protein 2; s 97.7 0.011 3.8E-07 51.6 21.2 223 124-351 18-278 (302)
306 3ii7_A Kelch-like protein 7; p 97.6 0.01 3.5E-07 51.9 20.6 141 206-351 59-227 (306)
307 3s94_A LRP-6, low-density lipo 97.6 0.025 8.7E-07 54.8 24.7 223 131-356 17-250 (619)
308 3ii7_A Kelch-like protein 7; p 97.6 0.023 7.8E-07 49.7 22.3 224 124-352 14-275 (306)
309 3p5b_L Low density lipoprotein 97.6 0.044 1.5E-06 50.0 29.4 215 112-328 111-342 (400)
310 3ei3_A DNA damage-binding prot 97.6 0.11 3.7E-06 54.2 37.4 291 124-425 619-999 (1158)
311 2xbg_A YCF48-like protein; pho 97.5 0.039 1.3E-06 48.8 26.7 226 113-347 80-320 (327)
312 2xn4_A Kelch-like protein 2; s 97.5 0.02 7E-07 49.9 21.0 175 172-351 30-231 (302)
313 4asc_A Kelch repeat and BTB do 97.5 0.032 1.1E-06 49.0 22.2 222 124-353 7-281 (315)
314 1zgk_A Kelch-like ECH-associat 97.5 0.02 6.7E-07 50.2 19.8 226 121-352 24-290 (308)
315 3ott_A Two-component system se 97.4 0.12 4.1E-06 51.6 35.0 230 112-352 21-263 (758)
316 1bpo_A Protein (clathrin); cla 97.4 0.065 2.2E-06 48.4 31.2 230 131-367 47-307 (494)
317 3s94_A LRP-6, low-density lipo 97.4 0.1 3.5E-06 50.5 27.1 182 166-349 12-202 (619)
318 2p9w_A MAL S 1 allergenic prot 97.3 0.072 2.5E-06 46.5 20.8 121 234-356 13-174 (334)
319 2be1_A Serine/threonine-protei 97.3 0.0014 4.7E-08 57.9 9.7 111 206-316 13-140 (339)
320 4asc_A Kelch repeat and BTB do 97.2 0.059 2E-06 47.2 19.8 175 172-351 13-223 (315)
321 3kya_A Putative phosphatase; s 97.1 0.17 5.9E-06 47.1 29.3 253 154-426 141-476 (496)
322 1zgk_A Kelch-like ECH-associat 97.1 0.1 3.5E-06 45.5 20.3 174 172-351 39-242 (308)
323 3kya_A Putative phosphatase; s 97.1 0.19 6.4E-06 46.9 27.5 235 116-353 142-479 (496)
324 2uvk_A YJHT; unknown function, 97.1 0.073 2.5E-06 47.6 19.6 142 213-358 168-351 (357)
325 1xi4_A Clathrin heavy chain; a 97.1 0.058 2E-06 56.2 20.2 231 131-368 47-308 (1630)
326 2woz_A Kelch repeat and BTB do 97.0 0.15 5.2E-06 44.6 22.8 222 124-353 18-291 (318)
327 3ott_A Two-component system se 97.0 0.35 1.2E-05 48.2 29.1 191 153-352 23-223 (758)
328 2uvk_A YJHT; unknown function, 96.9 0.19 6.4E-06 44.8 20.9 50 254-304 168-224 (357)
329 1xi4_A Clathrin heavy chain; a 96.8 0.13 4.5E-06 53.7 20.0 227 123-352 77-334 (1630)
330 2ism_A Putative oxidoreductase 96.8 0.27 9.1E-06 43.9 23.5 224 104-337 22-333 (352)
331 3pbp_A Nucleoporin NUP82; beta 96.7 0.29 9.8E-06 44.3 19.1 154 124-302 34-208 (452)
332 2p1m_B Transport inhibitor res 96.6 0.001 3.4E-08 64.6 3.1 37 21-57 3-40 (594)
333 2woz_A Kelch repeat and BTB do 96.6 0.35 1.2E-05 42.3 19.9 132 215-351 80-233 (318)
334 2ism_A Putative oxidoreductase 96.2 0.65 2.2E-05 41.3 24.7 140 152-293 31-220 (352)
335 3sre_A PON1, serum paraoxonase 96.0 0.8 2.7E-05 40.7 25.5 140 212-357 138-308 (355)
336 3sre_A PON1, serum paraoxonase 95.5 1.2 4.3E-05 39.4 19.1 135 211-349 81-252 (355)
337 3ogk_B Coronatine-insensitive 95.5 0.0056 1.9E-07 59.3 2.6 33 25-57 14-47 (592)
338 3pbp_A Nucleoporin NUP82; beta 95.2 1.7 5.7E-05 39.4 19.7 141 202-346 31-209 (452)
339 2zwa_A Leucine carboxyl methyl 95.2 2.7 9.1E-05 41.3 20.9 147 204-351 399-579 (695)
340 2zwa_A Leucine carboxyl methyl 94.0 4 0.00014 40.1 18.6 191 161-352 396-638 (695)
341 3sbq_A Nitrous-oxide reductase 94.0 4.2 0.00014 38.2 21.2 84 276-361 323-430 (638)
342 3a9g_A Putative uncharacterize 93.6 3.7 0.00013 36.4 29.5 230 102-337 18-330 (354)
343 4hfx_A Transcription elongatio 92.7 0.078 2.7E-06 36.5 2.9 67 26-94 12-79 (97)
344 1tl2_A L10, protein (tachylect 92.6 1.5 5E-05 35.8 10.6 106 234-345 41-159 (236)
345 3qhy_B Beta-lactamase inhibito 92.4 4.6 0.00016 34.4 17.6 211 196-425 26-246 (282)
346 3a9g_A Putative uncharacterize 89.1 11 0.00039 33.2 26.9 139 152-293 29-215 (354)
347 2g8s_A Glucose/sorbosone dehyd 87.9 14 0.00047 32.6 26.9 234 104-342 9-347 (353)
348 3qhy_B Beta-lactamase inhibito 87.8 12 0.00041 31.8 20.8 219 114-349 25-246 (282)
349 1cru_A Protein (soluble quinop 87.8 17 0.00057 33.5 18.2 61 234-294 77-162 (454)
350 1cru_A Protein (soluble quinop 86.9 19 0.00064 33.1 19.6 103 234-337 27-162 (454)
351 3uc1_A DNA gyrase subunit A; D 85.3 18 0.00062 31.5 22.9 180 124-306 5-228 (327)
352 4gq2_M Nucleoporin NUP120; bet 84.1 15 0.0005 37.6 13.5 40 318-358 236-275 (950)
353 3sbq_A Nitrous-oxide reductase 82.4 10 0.00035 35.7 10.4 113 235-349 324-478 (638)
354 4gq2_M Nucleoporin NUP120; bet 82.2 14 0.00049 37.7 12.6 38 277-314 237-274 (950)
355 3q6k_A 43.2 kDa salivary prote 82.1 27 0.00094 31.1 17.2 134 214-349 124-306 (381)
356 3s25_A Hypothetical 7-bladed b 80.9 26 0.00089 30.1 30.6 205 120-348 23-254 (302)
357 3s25_A Hypothetical 7-bladed b 79.5 29 0.00099 29.8 23.1 123 213-350 88-217 (302)
358 1tl2_A L10, protein (tachylect 76.5 30 0.001 28.2 18.6 144 152-300 41-204 (236)
359 3das_A Putative oxidoreductase 76.4 40 0.0014 29.6 27.6 229 104-337 23-326 (347)
360 3f7f_A Nucleoporin NUP120; nuc 76.1 4.9 0.00017 39.1 6.5 38 113-150 222-259 (729)
361 1suu_A DNA gyrase subunit A; t 74.0 43 0.0015 28.9 26.8 182 124-306 10-231 (312)
362 4fhn_B Nucleoporin NUP120; pro 73.2 9.7 0.00033 39.8 8.5 39 319-358 239-277 (1139)
363 2g8s_A Glucose/sorbosone dehyd 69.5 58 0.002 28.5 26.9 30 152-181 18-48 (353)
364 1suu_A DNA gyrase subunit A; t 67.0 61 0.0021 27.9 22.7 182 162-348 7-230 (312)
365 3das_A Putative oxidoreductase 65.7 70 0.0024 28.1 23.3 109 228-337 26-158 (347)
366 1zi0_A DNA gyrase subunit A; b 63.5 71 0.0024 27.4 28.1 181 124-305 5-225 (307)
367 2wg3_C Hedgehog-interacting pr 62.9 94 0.0032 28.5 15.0 104 234-338 14-158 (463)
368 4a9v_A PHOX; hydrolase, beta-p 62.4 43 0.0015 31.7 9.5 60 235-294 477-549 (592)
369 3zwu_A Alkaline phosphatase PH 60.9 33 0.0011 32.7 8.6 59 277-336 477-548 (592)
370 3f7f_A Nucleoporin NUP120; nuc 58.1 16 0.00055 35.5 6.0 31 328-358 229-259 (729)
371 4fhn_B Nucleoporin NUP120; pro 57.8 1.8E+02 0.0063 30.3 18.8 38 277-314 239-276 (1139)
372 1wp5_A Topoisomerase IV; broke 55.6 1E+02 0.0035 26.7 27.2 182 124-306 7-225 (323)
373 4a9v_A PHOX; hydrolase, beta-p 55.3 68 0.0023 30.4 9.5 60 277-337 477-549 (592)
374 4hvt_A Ritya.17583.B, post-pro 55.0 1.6E+02 0.0055 28.8 23.9 214 132-351 156-431 (711)
375 3zwu_A Alkaline phosphatase PH 53.8 50 0.0017 31.5 8.6 58 236-293 478-548 (592)
376 3l6v_A GYRA, DNA gyrase subuni 49.8 1.4E+02 0.0047 26.4 27.4 182 124-306 9-265 (370)
377 3no0_A DNA gyrase subunit A; D 44.4 1.4E+02 0.0048 25.0 23.9 101 203-306 80-196 (276)
378 3kci_A Probable E3 ubiquitin-p 43.4 1.7E+02 0.0059 25.8 31.9 223 197-424 56-344 (389)
379 2zux_A YESW protein; beta-prop 42.2 2.3E+02 0.0078 26.8 20.0 173 255-428 152-403 (591)
380 3b7f_A Glycosyl hydrolase, BNR 36.7 2.2E+02 0.0075 25.0 16.5 138 206-346 25-205 (394)
381 1wp5_A Topoisomerase IV; broke 34.7 2.2E+02 0.0076 24.5 22.4 183 162-348 4-224 (323)
382 2wg3_C Hedgehog-interacting pr 32.3 2.9E+02 0.01 25.2 12.6 52 277-329 15-79 (463)
383 3uc1_A DNA gyrase subunit A; D 29.8 2.7E+02 0.0093 24.0 25.1 144 162-306 108-279 (327)
384 3ol2_B Plexin-B1; beta-propell 29.0 2.6E+02 0.0089 26.2 9.0 67 235-301 388-461 (528)
385 3al9_A Plexin-A2; beta-propell 27.0 2.2E+02 0.0075 26.7 8.3 67 235-301 401-476 (539)
386 1sr4_A CDT A, cytolethal diste 26.3 1.1E+02 0.0039 24.2 5.1 97 252-357 67-167 (206)
387 2zux_A YESW protein; beta-prop 25.6 4.3E+02 0.015 25.0 23.2 137 215-358 231-409 (591)
388 3no0_A DNA gyrase subunit A; D 24.5 3.1E+02 0.011 22.9 21.8 141 203-348 35-195 (276)
389 1ukf_A Avirulence protein AVRP 24.0 1.3E+02 0.0044 23.5 4.9 34 112-145 118-154 (188)
390 1q47_A Semaphorin 3A; beta pro 22.6 3.1E+02 0.011 25.4 8.3 67 235-301 405-487 (495)
391 3al9_A Plexin-A2; beta-propell 21.9 2.6E+02 0.0089 26.2 7.7 67 277-344 401-476 (539)
392 1q47_A Semaphorin 3A; beta pro 21.1 3.1E+02 0.011 25.3 7.9 67 277-344 405-487 (495)
393 2lh0_A Histone chaperone RTT10 21.0 56 0.0019 20.7 2.0 28 23-50 8-37 (70)
No 1
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.5e-51 Score=384.57 Aligned_cols=398 Identities=15% Similarity=0.195 Sum_probs=325.0
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCC------------CCCchHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNT------------SGSSMRLH 85 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~------------~~~~~~~~ 85 (430)
....+++..||.|++.+||+||++.+|.++++|||+|+.++.++.+|+.+|++.+...+. ...+|+..
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~ 92 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSA 92 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHH
Confidence 446799999999999999999999999999999999999999999999999776532211 22344443
Q ss_pred HHHHHcccchhhcccCCE-eEEEEeccccce-eEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC
Q 014104 86 LEELAMKHHRFALEEGRI-DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD 162 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (430)
+.. ......+|..|.. ....+.+|.+.| .++.+++++|++|+.||+|++||+.+++.+..+.+| ..+..++++
T Consensus 93 ~~~--~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 93 YIR--QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp HHH--HHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--
T ss_pred Hhh--hhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--
Confidence 222 1223466777665 567899999875 677777779999999999999999999999998876 345556665
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
++.++ ++.|+.|++||+++++..... .++...+.++.+.++.+++|+.||.|++||+.+++.+..+.+|...|.++++
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 67777 889999999999988754322 2333345677777888999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 242 SEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 242 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
.++.+++|+.||.|++||+++++.+..+.+ |...|.++.| ++.++++|+.|+.|++||+++++.+..+.+|...+.
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 567899999999999999999999999987 8889999999 789999999999999999999999999999999898
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe---ccCcc--------eeeeccCCceEEEeecccccCCccccc
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM---DIGSA--------SSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~--------~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
++. + ++.++++|+.||.|++||+.+++.+..+.. |...+ .+++++.||.+.+|+......-..+..
T Consensus 324 ~~~-~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 324 GME-L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EEE-E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EEE-E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 877 5 577999999999999999999999988876 43333 678889999999887654322122211
Q ss_pred -CCCCCCCCeeEEEE--cCeEEEEeeCCCe----EEEEEecCCC
Q 014104 391 -IPKTIRPPITCLAV--GMKKVVTTHNSKY----IRLWKFNYSD 427 (430)
Q Consensus 391 -~~~~h~~~v~~v~~--~~~~l~t~~~Dg~----v~vw~~~~~~ 427 (430)
....|...|++++| ++.++++|+.||+ |.|||++...
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 12467889999999 4778999999998 9999998653
No 2
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-50 Score=381.05 Aligned_cols=364 Identities=22% Similarity=0.306 Sum_probs=294.3
Q ss_pred CCCCCccCCcHH----HHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC------------------CC
Q 014104 19 KPRATIESLNGD----IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF------------------SN 76 (430)
Q Consensus 19 ~~~~~~~~Lp~e----~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~------------------~~ 76 (430)
...|++..||.| ++++||+||++.+|+++++|||+|+.++.++.+|+.+|.+.... .+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKN 85 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhcc
Confidence 347899999999 99999999999999999999999999999999999999886421 00
Q ss_pred -C------CCCchHHHHHHHH--cccchhhcccCCEeEEEEe---ccccceeEEEecCCeEEEEeCCCeEEEEecCCCee
Q 014104 77 -T------SGSSMRLHLEELA--MKHHRFALEEGRIDIDQWK---AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC 144 (430)
Q Consensus 77 -~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 144 (430)
+ ....++..+..+. ......+|..|......+. +|...|.|+.+.++++++|+.||+|++||+.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~ 165 (435)
T 1p22_A 86 KPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC 165 (435)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE
T ss_pred CCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE
Confidence 0 1111122222221 1233567777776555554 56678999999777999999999999999999999
Q ss_pred EEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC
Q 014104 145 VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223 (430)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 223 (430)
+..+.+|.. .+.++.++++.++ ++.||.|++||+++++..... .++...+.++.+.+..+++|+.||.|++||+.++
T Consensus 166 ~~~~~~h~~-~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 166 KRILTGHTG-SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EEEECCCSS-CEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred EEEEcCCCC-cEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC
Confidence 999887633 3344455888888 889999999999988753222 2333445677777778999999999999999988
Q ss_pred eee---EEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 224 KCS---QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 224 ~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+.. ..+.+|...|.++++ .++++++|+.||.|++||+++++.+..+.+ |...|.++.+ +++++++|+.||.|+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIR 319 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred CCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 765 677889999999999 567999999999999999999999999987 8889999999 468999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc---------eEEEEEeccCcceeeeccCC
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE---------VLSRCVMDIGSASSSSNKVS 371 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~s~d 371 (430)
+||+++++++..+.+|...|.++. + ++.+|++|+.||.|++||+.+++ ++..+.
T Consensus 320 iwd~~~~~~~~~~~~h~~~v~~~~-~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------- 382 (435)
T 1p22_A 320 LWDIECGACLRVLEGHEELVRCIR-F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------------- 382 (435)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEE-C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--------------
T ss_pred EEECCCCCEEEEEeCCcCcEEEEE-e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--------------
Confidence 999999999999999999999998 6 78999999999999999997655 444443
Q ss_pred ceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 372 GVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+|...|++++|++.+|++|+.||+|++||+.++.
T Consensus 383 ----------------------~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 383 ----------------------EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ----------------------CCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred ----------------------CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 4667999999999999999999999999998764
No 3
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-48 Score=370.38 Aligned_cols=394 Identities=18% Similarity=0.182 Sum_probs=308.1
Q ss_pred CCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCC-chhHHHHHHHhcCCCCCC-------------CCchH-H
Q 014104 20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR-CKLLQLLYCKLHGFSNTS-------------GSSMR-L 84 (430)
Q Consensus 20 ~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~-~~lw~~~~~~~~~~~~~~-------------~~~~~-~ 84 (430)
.++++..||.|++++||+||++++|+++++|||.|+.++.+ +.+|+.+|.+........ ....+ .
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDR 90 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchh
Confidence 56899999999999999999999999999999999999998 899999998775433220 00001 1
Q ss_pred HHHH-HHcccchhhcccCCE--eEEEEeccccce-eEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEE
Q 014104 85 HLEE-LAMKHHRFALEEGRI--DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDF 159 (430)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~~~--~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~ 159 (430)
+... .........|..+.. ....+.+|.+.| .++.+++++|++|+.||+|++||+.+++.+..+.+| ..+..++|
T Consensus 91 ~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~ 170 (464)
T 3v7d_B 91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170 (464)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred hHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEE
Confidence 1110 011112244555543 677899999885 677787789999999999999999999999999876 56777999
Q ss_pred ecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEE--cCCceEEEecCCeEEEEECCCCee---------
Q 014104 160 DFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKC--------- 225 (430)
Q Consensus 160 ~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~--------- 225 (430)
++++ .++ ++.|+.|++||+++++.. +..+... +..+.+.+ .+..+++|+.||.|++||+.+++.
T Consensus 171 ~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 171 AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST-VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc-cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 9888 555 899999999999988743 3333333 33445554 334599999999999999987652
Q ss_pred --------------eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE
Q 014104 226 --------------SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 226 --------------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
+..+.+|...|.++.. .++++++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEE
Confidence 4567788899988854 357899999999999999999999999987 888999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec---------cCc
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD---------IGS 362 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------~~~ 362 (430)
+|+.||.|++||+++++++..+.+|...|.++. ++ +.+|++++.||.|++||+.++......... ..+
T Consensus 327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLR-LS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-EC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECS
T ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE-Ec--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCC
Confidence 999999999999999999999999999999998 75 689999999999999999988766655321 122
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeE-EEEeeCCCeEEEEEec
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKK-VVTTHNSKYIRLWKFN 424 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-l~t~~~Dg~v~vw~~~ 424 (430)
..+++++ ||.+.+|+. ..+..+......|...|++++|+++. +++++.||.+.+|-++
T Consensus 404 ~~l~~~~-dg~i~iwd~---~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNL---RSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp SEEEEEE-TTEEEEEET---TTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CEEEEec-CCeEEEEEC---CCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 2455555 777777654 34555666567789999999998665 5556677776665543
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-45 Score=344.01 Aligned_cols=289 Identities=15% Similarity=0.214 Sum_probs=253.8
Q ss_pred hcccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
.|.........+.+|.++|++++| +++ +|++|+.||+|++||+.+++....+.+| ..+..++|+++++.|+ ++.|+
T Consensus 93 ~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 93 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 344444456678999999999999 455 9999999999999999999999999877 5677899999999998 88999
Q ss_pred eEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 173 RICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 173 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
.|++||+.+.+.+ +..+... +..+++.+.+..+++|+.|++|++||+++++++..+.+|...|.++.++|+ .++++
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~-V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCC-EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9999999887643 3333332 344556666777999999999999999999999999999999999999976 89999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--------------------CCEEEEEeCCCeEEEEeCCCCce
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC--------------------SRLVFAGTTAGYASCWDLRTMKS 309 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~ 309 (430)
|+.|++|++||+.+++....+.. |...|.+++|+|+ |.+|++|+.|+.|++||++++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 99999999999999999999987 8889999999996 67899999999999999999999
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
+..+.+|...|.+++ |+|++++|++|+.||.|++||+.+++++..+..|
T Consensus 331 ~~~~~~h~~~v~~v~-~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h------------------------------ 379 (410)
T 1vyh_C 331 LMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------------------------------ 379 (410)
T ss_dssp EEEEECCSSCEEEEE-ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC------------------------------
T ss_pred EEEEECCCCcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------------------------------
Confidence 999999999999999 9999999999999999999999999988888654
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
...|++++| ++.+|+||+.||+|+||++.
T Consensus 380 ------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 ------EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ------SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 458999999 47789999999999999863
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-44 Score=328.07 Aligned_cols=280 Identities=17% Similarity=0.215 Sum_probs=242.4
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....+|.+|.+.|.+++| +++ +|++|+.||+|++||..+++.+..+..+ ..+..++|+|++++++ ++.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 457789999999999999 455 9999999999999999999999888876 4577799999999999 88999999999
Q ss_pred cCCCcc------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 179 RNGLRS------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 179 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+.+... .+..+.+.+ ..+.+.+ +..+++++.|++|++||+++++++..+.+|.+.|.+++|+|+ .++++|+
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v-~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYL-SCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCE-EEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CccCCCcceeEEEecCCCccE-EEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 987542 122333322 2233333 334999999999999999999999999999999999999986 7999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~ 329 (430)
.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++|+.||+|++||+++++.+..+.. +...|.+++ |+|+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~ 281 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKS 281 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-ECTT
T ss_pred CCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE-ECCC
Confidence 999999999999999999987 888999999999999999999999999999999887766653 235799998 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
+++|++|+.||.|++||+.+++.+..+.+ |...|++++| ++.
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAG------------------------------------HDNRVSCLGVTDDGM 325 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEC------------------------------------CSSCEEEEEECTTSS
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeec------------------------------------CCCcEEEEEEcCCCC
Confidence 99999999999999999999998888765 4458899998 578
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
+|+||+.||+|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 899999999999996
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=323.96 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=248.2
Q ss_pred eEEEEeccccceeEEEec-----CC-eEEEEeCCCeEEEEecCCCee--EEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 104 DIDQWKAHSVGVDQCRMK-----RG-LILTGVGDKVMRLWSLEGYKC--VEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-----~~-~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+.+.+|.+.|++++|. ++ +|+||+.|++|++||+.+++. ...+.+| ..+..+++++++..++ ++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 456778999999999993 23 899999999999999987654 3456665 5677799999999998 888999
Q ss_pred EEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|++||+.+++.+.... .......+++.+++..+++++.||.|++||+++++....+..|...|.+++|+|+ +++++|+
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 9999999887543221 1222345677778888999999999999999999999999999999999999986 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
.|+.|++||+++++.+..+.+ |..+|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++ |+|+++
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-~sp~~~ 261 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA-FCPDDT 261 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE-ECCCCC
Confidence 999999999999999999987 888999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV 409 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l 409 (430)
+|++++.|++|++||+.+++++.++.. |...|++++| ++++|
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFFD------------------------------------HQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC------------------------------------CSSCEEEEEECTTSSEE
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEcC------------------------------------CCCcEEEEEECCCCCEE
Confidence 999999999999999999999888865 4458999999 57899
Q ss_pred EEeeCCCeEEEEEec
Q 014104 410 VTTHNSKYIRLWKFN 424 (430)
Q Consensus 410 ~t~~~Dg~v~vw~~~ 424 (430)
++++.||+|+|||+.
T Consensus 306 ~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 306 VSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCeEEEEeCC
Confidence 999999999999974
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-44 Score=333.71 Aligned_cols=295 Identities=19% Similarity=0.228 Sum_probs=247.9
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.....++|.||.+.|++++| +++ +|+||+.||+|++||+.+++....+..| ..+..++|+|++++++ ++.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34577899999999999999 555 9999999999999999999999999876 4567799999999999 888999999
Q ss_pred EEcCCCc---------ccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-----ecCCCCeEEEEe
Q 014104 177 WRRNGLR---------SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-----RMHCAPVTSLSL 241 (430)
Q Consensus 177 wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~ 241 (430)
||+.+.. ..+..|.+.+ ..+.+.+.++ .+++|+.|++|++||+.+++.+..+ .+|...|.++++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v-~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCC-CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EECCCCccccCCccceeeccCCCcce-EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 9987532 1223333332 2233333333 4999999999999999999988877 678999999999
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-
Q 014104 242 SE-D-QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP- 317 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 317 (430)
++ + +++++|+.|++|++||++ .++.+..+.+ |...|.+++|+|++++|++|+.||+|++||+++++.+..+..+.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 85 4 799999999999999998 4577788877 88899999999999999999999999999999998887766543
Q ss_pred ------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 318 ------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 318 ------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
..|.+++ |+|+|++|++|+.||.|++||+.+++.+..+.. .
T Consensus 293 ~~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------------------------------~ 339 (380)
T 3iz6_a 293 RNDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--------------------------------L 339 (380)
T ss_dssp SSCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTTCCEEEEECC--------------------------------S
T ss_pred ccccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCCCceEEEEec--------------------------------c
Confidence 2488998 999999999999999999999998888776632 1
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
..+|...|++++| ++.+|+||+.||+|+||++...++++
T Consensus 340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~iv 380 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380 (380)
T ss_dssp CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSSCC
T ss_pred cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcccC
Confidence 2457889999999 68999999999999999999877653
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.5e-43 Score=319.97 Aligned_cols=281 Identities=16% Similarity=0.165 Sum_probs=242.7
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....+|.||.+.|++++| +++ +|+||+.||+|++||..+++....+..+ ..+..++|+|++..++ ++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 457789999999999999 555 9999999999999999998888888765 5577899999999999 88899999999
Q ss_pred cCCCcc--------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEE
Q 014104 179 RNGLRS--------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 179 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l 247 (430)
+..... .+..|.+. ...+.+.+.+..+++++.|++|++||+++++++..+.+|...|.+++++|+ +.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNY-LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCc-EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 865421 12223322 334555556667999999999999999999999999999999999999862 699
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEE
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQH 325 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~ 325 (430)
++|+.||.|++||+++++++..+.. |...|.+++|+|++++|++|+.|++|++||+++++.+..+..+ ...+.+++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~- 291 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD- 291 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE-
Confidence 9999999999999999999999987 8889999999999999999999999999999988777666543 34688998
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV- 404 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~- 404 (430)
|+|++++|++|+.|+.|++||+.+++.+..+.. |...|++++|
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~------------------------------------h~~~v~~l~~s 335 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG------------------------------------HENRVSTLRVS 335 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECC------------------------------------CSSCEEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEEC------------------------------------CCCcEEEEEEC
Confidence 999999999999999999999999988877754 5558999998
Q ss_pred -cCeEEEEeeCCCeEEEEE
Q 014104 405 -GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 405 -~~~~l~t~~~Dg~v~vw~ 422 (430)
++++|++|+.||+|+||+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 588999999999999996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-42 Score=311.99 Aligned_cols=284 Identities=16% Similarity=0.198 Sum_probs=243.9
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..++|.+|.+.|.+++| |++ +|++|+.||+|++||+.+++.+..+..+ ..+..++|+++++.|+ ++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45689999999999999 566 9999999999999999999999999876 4577799999999999 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC-C-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg 254 (430)
++++.+ +..|... +..+++.+.++.+++|+.||+|++||++++ .....+.+|...|.+++|+| + ..+++|+.|+
T Consensus 85 ~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCcEEEEEeCCCCc-EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 988753 3444443 345666677778999999999999999887 55677889999999999997 4 7899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
+|++||++++.....+..++...+..+.|+| ++++|++|+.|++|++||+++++++..+.+|...|.+++ |+|++++
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~-~~p~~~~ 242 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPI 242 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE-ECCCCCE
Confidence 9999999988887777766777899999987 678999999999999999999999999999999999999 9999999
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--C-e-E
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--M-K-K 408 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~-~-~ 408 (430)
|++|+.||+|++||+.++++++++..+. ..+.++++. + . +
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~ 286 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGL------------------------------------ERSWCIATHPTGRKNY 286 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSS------------------------------------SSEEEEEECTTCGGGC
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCC------------------------------------ccEEEEEECCCCCceE
Confidence 9999999999999999999998886543 478888872 3 2 5
Q ss_pred EEEeeCCCeEEEEEecCC
Q 014104 409 VVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~~~ 426 (430)
+++|++|| +.+|++...
T Consensus 287 ~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 287 IASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEETTE-EEEEECC--
T ss_pred EEEecCCc-eEEEEeccC
Confidence 77777665 678887654
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.9e-42 Score=335.37 Aligned_cols=248 Identities=15% Similarity=0.215 Sum_probs=206.3
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeC----C
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIG----T 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~----~ 172 (430)
.....|.+|.+.|++++| |+| +|++|+.|++|+|||+.+++ ....+..+ ..+..++|+|+++.|+ ++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 456788999999999999 566 99999999999999987543 34556654 5678899999999999 4433 3
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
.|++||.......+..|... +..+++.+.++. +++|+.|++|++||..+++++..+.+|...|.+++|+|+ +++++|
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~-v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARA-MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSC-EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeeCCCCcceecCCCCC-ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 68888754433444444443 344566666664 999999999999999999999999999999999999986 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-------------
Q 014104 251 SSLGSIAISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW------------- 311 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------- 311 (430)
+.|++|++||+.+++.+..+.. .|...|.+++|+|+|++|++++.|++|++||+++++.+.
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 9999999999999999888842 488899999999999999999999999999998776543
Q ss_pred ------------------------------eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 312 ------------------------------ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 312 ------------------------------~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.+.+|...|.+++ |+|+|++|++++.|++|++||+.+++.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~-~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS-SSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE-EeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 2347888999999 999999999999999999999886644
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-41 Score=304.66 Aligned_cols=289 Identities=16% Similarity=0.216 Sum_probs=241.6
Q ss_pred eEEEEeccccceeEEEec-C--CeEEEEeCCCeEEEEecCC-----CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 104 DIDQWKAHSVGVDQCRMK-R--GLILTGVGDKVMRLWSLEG-----YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~--~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
...+|.||.+.|.+++|+ + .+|+||+.|++|++||+.+ +..+..+.+| ..+..++|++++++++ ++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 456899999999999994 3 3999999999999999864 3456677776 5677799999999999 888999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-------
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED------- 244 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~------- 244 (430)
|++||+++++.. +..+... +..+++.+.+..+++|+.|++|++||++ ++++..+.+|...|.++.+.|.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSC-EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEECCCCCeeEEEccCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999988743 3444443 2344555566679999999999999995 6678888999999999999874
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
..+++++.|+.|++||+++++....+.+ |...|.+++|+|+|++|++|+.||.|++||+++++.+..+..+ ..|.+++
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 244 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLA 244 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEE
Confidence 3799999999999999999999888887 8889999999999999999999999999999999998888765 6899999
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
|+|++.+|++++.+ .+++|++..+..+..+..+.. .....|...+.+++|
T Consensus 245 -~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 245 -FSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA----------------------------GYSKAAEPHAVSLAW 294 (319)
T ss_dssp -ECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT----------------------------TCCGGGCCCEEEEEE
T ss_pred -EcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc----------------------------ccccCcCcceeEEEE
Confidence 99999999888754 599999998777766643221 111235668899999
Q ss_pred --cCeEEEEeeCCCeEEEEEecCC
Q 014104 405 --GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
||++|++|+.||.|+|||+.++
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 6999999999999999999865
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=312.40 Aligned_cols=278 Identities=15% Similarity=0.163 Sum_probs=224.0
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC------------CeeEEeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
..|...|.+++| ++| +|++++ |+++++||... +.....+.....+..++|++++..+.++.||.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 357778999999 677 666665 77888887321 122233444566888999999766669999999
Q ss_pred EEEEcCCCcccc------cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CE
Q 014104 175 CIWRRNGLRSVF------PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QL 246 (430)
Q Consensus 175 ~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 246 (430)
++||+++++... ..|.+. +..+++.+++..|++|+.||+|++||+++++++..+.+|.+.|.+++|+++ .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~-V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDI-VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCC-EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 123333 345666667778999999999999999999999999999999999999975 58
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecC-CCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRST-DCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
+++|+.|++|++||+++++....+... +...+.+++|+|+ +++|++|+.||.|++||+++++++..+.+|...|++++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 899999999999999999988877532 4457999999985 56889999999999999999999999999999999999
Q ss_pred EeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|++ ++|++|+.|++|+|||+.+++++. + .+|...|++++
T Consensus 265 -fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~------------------------------------~~H~~~V~~v~ 306 (344)
T 4gqb_B 265 -FSPHSVPFLASLSEDCSLAVLDSSLSELFR-S------------------------------------QAHRDFVRDAT 306 (344)
T ss_dssp -ECSSSSCCEEEEETTSCEEEECTTCCEEEE-E------------------------------------CCCSSCEEEEE
T ss_pred -EccCCCeEEEEEeCCCeEEEEECCCCcEEE-E------------------------------------cCCCCCEEEEE
Confidence 99998 579999999999999999886543 3 24677999999
Q ss_pred Ec--C-eEEEEeeCCCeEEEEEecCC
Q 014104 404 VG--M-KKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 404 ~~--~-~~l~t~~~Dg~v~vw~~~~~ 426 (430)
|+ + .+|+|||.||+|++|++.++
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 93 4 46789999999999999765
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-42 Score=315.06 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=226.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeC------CCeEEEEecCCCeeE-----EeeecCCceeEEEEecCCCEEEEEeCCe
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVG------DKVMRLWSLEGYKCV-----EEYSLPNAASLVDFDFDESKIVGLIGTR 173 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~------dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (430)
...+|.+.|++++| ||| +|++|+. |+.|++|+..++... ....+...+..++|+|++..++++.|+.
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~ 116 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGA 116 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSC
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCE
Confidence 34579999999999 677 9999997 788999998776543 2334456788899999998888999999
Q ss_pred EEEEEcCCCccccc------CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--C
Q 014104 174 ICIWRRNGLRSVFP------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--Q 245 (430)
Q Consensus 174 i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~ 245 (430)
|++||+.+++.... .+.. .+..+++.+++..|++|+.||.|++||+++++++..+.+|...|++++|+++ .
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 99999988764321 2222 2344566667777999999999999999999999999999999999999965 5
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l 323 (430)
++++++.|+.|++||+++++....+.. .+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|+++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 899999999999999999887766543 255689999999974 688999999999999999999999999999999999
Q ss_pred EEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEE
Q 014104 324 QHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCL 402 (430)
Q Consensus 324 ~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v 402 (430)
+ |+|++ ++|++|+.|++|+|||++++++++.+ +|...|+++
T Consensus 276 ~-~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-------------------------------------~H~~~V~~v 317 (357)
T 4g56_B 276 A-YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-------------------------------------SHRDFVTGV 317 (357)
T ss_dssp E-ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-------------------------------------CCSSCEEEE
T ss_pred E-EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-------------------------------------CCCCCEEEE
Confidence 9 99987 57999999999999999988776543 366789999
Q ss_pred EE---cCeEEEEeeCCCeEEEEEecCC
Q 014104 403 AV---GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 403 ~~---~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+| ++.+|+|||.||+|++|++...
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 98 4789999999999999999764
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-41 Score=302.47 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=247.8
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..++.....++.+|.+.|++++| +++ +|++|+.||.|++||+.+++....+..+ ..+..++|+|+++.|+ ++.|+.
T Consensus 9 ~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 34556677899999999999999 555 9999999999999999999998888876 5577799999999999 888999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|++||+++++.+ +..+... ...+.+.+.+..+++|+.||.|++||+++++++..+..|..+|.+++|+|+ .+++++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSC-EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 999999987743 3333333 344556666777999999999999999999999999999999999999976 799999
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE--EEeeC
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL--QHLQN 328 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l--~~~s~ 328 (430)
+.||.|++||+++++.+..+...+...+..++|+|++++|++++.|+.|++||+++++.+..+.+|...+..+ .+..+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 9999999999999999888876577789999999999999999999999999999999999888887543322 22457
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM 406 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~ 406 (430)
++.+|++|+.||.|++||+.+++.+..+.. |...|.+++| ++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQG------------------------------------HTDVVISTACHPTE 291 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECSSS
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhc------------------------------------cCCcEEEEeecCcC
Confidence 788999999999999999999999888865 4458888888 47
Q ss_pred eEEEEee--CCCeEEEEEec
Q 014104 407 KKVVTTH--NSKYIRLWKFN 424 (430)
Q Consensus 407 ~~l~t~~--~Dg~v~vw~~~ 424 (430)
+++++++ .|++|++|+.+
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 7899887 69999999975
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-40 Score=302.61 Aligned_cols=295 Identities=15% Similarity=0.176 Sum_probs=238.4
Q ss_pred EeEEEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCe-----eEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYK-----CVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
....+|+||.+.|++++|+ + + +|+||+.|++|+|||+.+.+ +...+.+| ..+..++|+|++++|+ ++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 3456899999999999994 4 4 99999999999999987643 45566665 5678899999999999 88999
Q ss_pred eEEEEEcCCCccccc-CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecCC---CEE
Q 014104 173 RICIWRRNGLRSVFP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~---~~l 247 (430)
.|++|+......... ...........+.+.+..+++++.|+.+++||+..... .....+|...+..++|+++ .++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999988764322 22223333444555666699999999999999876543 3445678999999999853 578
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++++.|+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.|+.|++||+++.+.+..+..+ ..|.++. ++
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~-~~ 265 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC-FS 265 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE-EC
T ss_pred EEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee-cC
Confidence 9999999999999999999999987 8889999999999999999999999999999999998888765 6788998 98
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|++. +++++.|+.|++||++++..+..+..+.. .....+|...|++++| +
T Consensus 266 ~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 266 PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------------------STSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp SSSS-EEEEEETTEEEEEETTTTEEEEEECCC----------------------------------CCCCCEEEEEECTT
T ss_pred CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------------------eeeccCCCCCEEEEEECCC
Confidence 8876 55666799999999998888877754221 1122468889999999 6
Q ss_pred CeEEEEeeCCCeEEEEEecCCCc
Q 014104 406 MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+++|+||+.||.|+|||+++|++
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC---
T ss_pred CCEEEEEeCCCEEEEEeCCCcCC
Confidence 89999999999999999999874
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=303.73 Aligned_cols=294 Identities=15% Similarity=0.242 Sum_probs=233.8
Q ss_pred CEeEEEEecccc-ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe--e-ecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 102 RIDIDQWKAHSV-GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--Y-SLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~-~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
...+.++.+|.+ .|.+++| |++ +|++|+.|++|+|||+.++..... + .+| ..+..++|+|++++|+ ++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999998 9999999 566 999999999999999988764422 2 333 5678899999999999 888999
Q ss_pred EEEEEcCCCcc----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC-C
Q 014104 174 ICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-Q 245 (430)
Q Consensus 174 i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~ 245 (430)
+++|++..+.. .+..|... +..+++.+.+..|++|+.|++|++||+.++ +++..+.+|...|.+++|+|+ .
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~-v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENE-VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCC-ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987642 23334333 344566667777999999999999999876 356778899999999999986 8
Q ss_pred EEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---------------c
Q 014104 246 LIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM---------------K 308 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~ 308 (430)
++++|+.|+.|++||.++++ +...+.+ |...|.+++|+|+|++|++|+.|++|++||.... +
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 99999999999999998875 3466766 8889999999999999999999999999997432 2
Q ss_pred eeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce----EEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 309 SLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV----LSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 309 ~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
++..+.+ |...|++++ |+|++..|++++.|+.|++|+...+.. ...+..+
T Consensus 243 ~~~~~~~~h~~~v~~v~-~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~------------------------ 297 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIA-WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH------------------------ 297 (345)
T ss_dssp EEEEECSSCSSCEEEEE-ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE------------------------
T ss_pred eeEEecCCCCCcEEEEE-EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee------------------------
Confidence 2334444 778999999 999999999999999999999875431 1111111
Q ss_pred CCcccccCCCCCCCCeeEEEEc--C-eEEEEeeCCCeEEEEEecCCCcC
Q 014104 384 AGCCIDRIPKTIRPPITCLAVG--M-KKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~~--~-~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
...+|...|++++|+ + .+|+|||.||+|++|++.+++++
T Consensus 298 -------~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 298 -------LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp -------ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred -------ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 124688899999995 3 58999999999999999988754
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-40 Score=327.18 Aligned_cols=317 Identities=14% Similarity=0.110 Sum_probs=253.1
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-------cC-CceeEEEEecCCCEEE-EEeC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-------LP-NAASLVDFDFDESKIV-GLIG 171 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~l~-~~~~ 171 (430)
..+.++.+|.+.|.+++| +++ +|++|+.|++|++||+.+++.+..+. +| ..+..++|+|++++|+ ++.|
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 457789999999999999 566 99999999999999999999888874 33 5677899999999999 8899
Q ss_pred CeEEEEEcCCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
+.|++||+.+++... ............+.+.+..+++++.||.+++||..++++...+.+|...|++++|+|+ ++++
T Consensus 261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~ 340 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340 (611)
T ss_dssp SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE
Confidence 999999999876432 2222222233455556777999999999999999999988899999999999999986 8999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec--------------------------------------------------------
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS-------------------------------------------------------- 272 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------------------------------- 272 (430)
+++.|++|++||+.+++....+..
T Consensus 341 s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s 420 (611)
T 1nr0_A 341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 420 (611)
T ss_dssp EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence 999999999999987654332100
Q ss_pred -------------------------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEE
Q 014104 273 -------------------------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQH 325 (430)
Q Consensus 273 -------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~ 325 (430)
.+...+.+++|+|+|++|++|+.|++|++||+.+++. +.. .+|...|.+++
T Consensus 421 ~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~- 498 (611)
T 1nr0_A 421 ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA- 498 (611)
T ss_dssp TTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-
T ss_pred CCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-
Confidence 0123467899999999999999999999999987643 233 67999999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC-CceE------------EEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT-GEVL------------SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~-~~~~------------~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
|+|+|++|++++.|++|++||+.+ ++++ ..+...+++..+++++.|+.+++|+..... .......
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~ 576 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIK 576 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT--SCCEEET
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc--cccchhh
Confidence 999999999999999999999986 4433 233344445567777788888887764321 1121345
Q ss_pred CCC-CCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 393 KTI-RPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 393 ~~h-~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+| ...|++++| +++ |++|+.|++|++|++.
T Consensus 577 ~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 678 899999999 466 9999999999999984
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-40 Score=306.45 Aligned_cols=281 Identities=19% Similarity=0.232 Sum_probs=233.3
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC-------------------ceeEEEEecCCCE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-------------------AASLVDFDFDESK 165 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 165 (430)
...+|.+.|.+++| ++| +|++|+ ++++++|++.+++.+..+..+. .+..++|+|++++
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 33479999999999 566 888876 7899999999998887776432 2667999999999
Q ss_pred EE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 166 IV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
|+ ++.|+.|++||+++++.. +..+... +..+++.+.+..+++++.|++|++||++++++...+. +...+.+++++
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQD-IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCC-EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 99 888999999999988743 3344433 3445566667779999999999999999999887776 56789999999
Q ss_pred C-C-CEEEEEeCCCeEEEEeCCCCceeEEEe------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-------
Q 014104 243 E-D-QLIISGSSLGSIAISGLSSDQRVATLR------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM------- 307 (430)
Q Consensus 243 ~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------- 307 (430)
| + .++++|+.|+.|++||+++++.+..+. ..|...|.+++|+|+|++|++|+.|+.|++||+++.
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 7 4 799999999999999999998887773 237789999999999999999999999999999753
Q ss_pred -----ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 308 -----KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 308 -----~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.+...+.+|...|.+++ ++|++.+|++|+.|+.|++||+.+++++..+.+|.
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~---------------------- 352 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR---------------------- 352 (393)
T ss_dssp -----CEEEEEECCSSCEEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS----------------------
T ss_pred CCCCCcceEEEecccCcEEEEE-ECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC----------------------
Confidence 34556788999999999 99999999999999999999999999988887654
Q ss_pred cCCcccccCCCCCCCCeeEEEE--------cCeEEEEeeCCCeEEEEEecCCC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--------GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--------~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|.++++ ++++|+||+.||+|+||++...+
T Consensus 353 --------------~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 353 --------------NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp --------------SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred --------------CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 47777776 25789999999999999987543
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-40 Score=298.48 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=225.0
Q ss_pred CEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCC--eeEEee-ec-C-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY--KCVEEY-SL-P-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
...+++|.+|.++|.+++|++++|++|+.|++|++||+.++ +....+ .. | ..+..++|+|+++.|+ ++.|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45678999999999999997679999999999999999875 445555 22 3 5678899999999998 88899999
Q ss_pred EEEcCCCc---------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC----CeeeEEeecCCCCeEEEEec
Q 014104 176 IWRRNGLR---------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 176 vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~~ 242 (430)
+||++... ..+..|... +..+++.+++..|++|+.|++|++||+.. .+++..+.+|...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENE-VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----C-EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCc-EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 99986421 122333333 34455666677799999999999999943 25677888999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCC--ceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC--------ce
Q 014104 243 ED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM--------KS 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~ 309 (430)
|+ .+|++|+.|++|++||..++ +++..+.+ |...|.+++|+|+ +..|++|+.|++|++||++.+ ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 86 89999999999999998876 56778877 8889999999998 678999999999999999764 33
Q ss_pred eeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 310 LWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 310 ~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
...+.. |...|++++ |++++ +|++++.||.|++||..+++.......
T Consensus 242 ~~~~~~~h~~~v~~v~-~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~------------------------------ 289 (330)
T 2hes_X 242 EAILPDVHKRQVYNVA-WGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR------------------------------ 289 (330)
T ss_dssp EEECCSCCSSCEEEEE-ECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE------------------------------
T ss_pred eeecccccccceEEEE-EcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc------------------------------
Confidence 444544 889999999 88654 899999999999999876642111110
Q ss_pred ccCCCCCCC-CeeEEEEc----CeEEEEeeCCCeEEEEEecC
Q 014104 389 DRIPKTIRP-PITCLAVG----MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 ~~~~~~h~~-~v~~v~~~----~~~l~t~~~Dg~v~vw~~~~ 425 (430)
..+|.. .|++++|. +++|+||+.||+|+||+++.
T Consensus 290 ---~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ---ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ---ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 124555 89999983 57899999999999999865
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-39 Score=318.87 Aligned_cols=310 Identities=15% Similarity=0.236 Sum_probs=260.4
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.....+..+.+|...|.+++| +++ .+++++.|+.|++||.. ++.+..+.++ ..+..++|+|+++.++ ++.|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 250 RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 344567889999999999999 566 99999999999999965 5677777765 5567799999999999 88899999
Q ss_pred EEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+||..+.... +..+.. ....+++.+++..+++++.||.|++||. +++.+..+.+|...|.+++|+|+ +++++++.|
T Consensus 329 ~w~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 329 LWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCCeeEEEeCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9998876533 333332 3344566667777999999999999995 67888899999999999999976 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+.|++||. +++.+..+.+ |...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++ |+|++++|
T Consensus 407 ~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~-~spd~~~l 482 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQTI 482 (577)
T ss_dssp SEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSCEE
T ss_pred CEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEE-EcCCCCEE
Confidence 99999995 5778888887 8889999999999999999999999999996 4778888999999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++++.|+.|++||. ++++++.+..|...+ ++++++.|+.+++|+. .+..+.. ..+|...|++++
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~----~~~~~~~-~~~h~~~v~~~~ 556 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 556 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT----TSCEEEE-EECCSSCEEEEE
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC----CCCEEEE-EcCCCCCEEEEE
Confidence 99999999999995 588888888887765 4555666667777662 2333333 357999999999
Q ss_pred E--cCeEEEEeeCCCeEEEEE
Q 014104 404 V--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~ 422 (430)
| |+++|+|++.|++|++||
T Consensus 557 fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 557 FSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEeCCCEEEEeC
Confidence 9 689999999999999997
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-39 Score=294.52 Aligned_cols=296 Identities=14% Similarity=0.177 Sum_probs=230.7
Q ss_pred CEeEEEEeccccceeEEEe-----c--CC-eEEEEeCCCeEEEEecCCC-------eeEEeeecC-CceeEEEEecCCCE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-----K--RG-LILTGVGDKVMRLWSLEGY-------KCVEEYSLP-NAASLVDFDFDESK 165 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-----~--~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~ 165 (430)
......|.||.+.|++++| . ++ +|+||+.|++|++||+.+. .....+.+| ..+..++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3467789999999999998 3 45 9999999999999998753 455666666 55778999999999
Q ss_pred EE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee---cCCCCeEEE
Q 014104 166 IV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSL 239 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~ 239 (430)
++ ++.|+.|++||+.+++.. +..|... +..+++.+++..+++++.|++|++||+.. ....... .|...|.++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSC-EEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCc-EEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 98 888999999999988743 3444443 34466666777899999999999999974 3333333 688899999
Q ss_pred EecCC-----------CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-
Q 014104 240 SLSED-----------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM- 307 (430)
Q Consensus 240 ~~~~~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 307 (430)
+|+|+ .++++++.|+.|++|| .+.+....+.+ |...|.+++|+|+|++|++|+.||.|++||+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcC-ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 99975 4899999999999999 45667777776 8889999999999999999999999999999543
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.....+ .+...|.+++ |+|++.+++++ .|+.|++||+.+++............ .
T Consensus 247 ~~~~~~-~~~~~v~~v~-~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~-----------------------~ 300 (343)
T 2xzm_R 247 YPQREF-DAGSTINQIA-FNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI-----------------------T 300 (343)
T ss_dssp SCSEEE-ECSSCEEEEE-ECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG-----------------------G
T ss_pred ccceee-cCCCcEEEEE-ECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc-----------------------h
Confidence 334333 3456799999 99999877655 57889999998776543221111100 0
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
......+|...|++++| ++++|++|+.||.|++|++++++
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 00112467889999999 58999999999999999998764
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-39 Score=287.58 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=245.5
Q ss_pred cCCEeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.+...++++.+|.+.|++++|+++ +|++|+.||.|++||+.+++....+..+ ..+..++|+|+++.++ ++.++.+++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 456788899999999999999766 9999999999999999999888887765 6677899999999999 889999999
Q ss_pred EEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeC
Q 014104 177 WRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~ 252 (430)
|++.... .......++...+.++.+.+..+++++.||.|++|| .++.+..+..|...+.++.+.| + +.+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 9987653 122222333344566777788899999999999999 7788889999999999999986 4 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
|+.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++ |+|++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK-LLPNG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECTTS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE-EecCC-C
Confidence 99999999 45677777766888999999999998 89999999999999999999999999999999999 99999 6
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
|++++.||.|++||+.+++++..+..|. ..|++++| +++ ++
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------------~~i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPA------------------------------------ISIWSVDCMSNGD-II 281 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSS------------------------------------SCEEEEEECTTSC-EE
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccC------------------------------------ceEEEEEEccCCC-EE
Confidence 8999999999999999999998887644 47888888 355 77
Q ss_pred EeeCCCeEEEEEecCCCc
Q 014104 411 TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 411 t~~~Dg~v~vw~~~~~~~ 428 (430)
+++.||.|++|++.+++.
T Consensus 282 ~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 282 VGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEETTSCEEEEESCGGGC
T ss_pred EEeCCCcEEEEeCCCCce
Confidence 899999999999987653
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-39 Score=302.47 Aligned_cols=302 Identities=16% Similarity=0.155 Sum_probs=248.5
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCe------eEEeeecC-CceeEEEEecC----C---CEEE-E
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK------CVEEYSLP-NAASLVDFDFD----E---SKIV-G 168 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~----~---~~l~-~ 168 (430)
....+.+|.+.|++++|++++|++|+.||+|++||+.+++ .+..+..+ ..+..++|+++ + +.|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4567889999999999977999999999999999999887 67777765 56778999999 8 8888 8
Q ss_pred EeCCeEEEEEcCCCcc-----c--ccCCC----CceeeeeEEE----EcCCc-eEEEecCCeEEEEECCC------Ceee
Q 014104 169 LIGTRICIWRRNGLRS-----V--FPSRE----GTFMKGLCMR----YFDPE-AVVGCEDGTARVFDMYS------RKCS 226 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~-----~--~~~~~----~~~~~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~------~~~~ 226 (430)
+.|+.|++||+.+++. . +..+. ...+..+++. +.+.. +++++.||.|++||+.+ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 8899999999987763 2 23332 2445567777 77888 99999999999999988 7666
Q ss_pred E-----Eee-------cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC--C---CCCeEEEEEecCCCE
Q 014104 227 Q-----IIR-------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST--D---CTGIKTLCYNPCSRL 289 (430)
Q Consensus 227 ~-----~~~-------~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~ 289 (430)
. .+. .|...|.+++|+|+..+++++.|+.|++||+++++.+..+... | ...|.+++|+|++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 6 774 4889999999997559999999999999999999998888741 4 779999999999999
Q ss_pred EEEEeCC---CeEEEEeCCCCceeeeeec-------------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 290 VFAGTTA---GYASCWDLRTMKSLWETRI-------------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 290 l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
|++++.| +.|++||+++++.+..+.. |...|.+++ |+|++++|++++.||.|++||+.+++++
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 9999999 9999999999999999998 999999999 9999999999999999999999999999
Q ss_pred EEEE------eccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC----------eEEEEeeCC
Q 014104 354 SRCV------MDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM----------KKVVTTHNS 415 (430)
Q Consensus 354 ~~~~------~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~----------~~l~t~~~D 415 (430)
..+. .|... ... ........|...|++++| ++ ++|++|+.|
T Consensus 327 ~~~~~~~~~~~~~~~-------------------~~~--g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 327 TTLNMHCDDIEIEED-------------------ILA--VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEEECCGGGCSSGGG-------------------CCC--BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred EEEecccCcccchhh-------------------hhc--cccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 9887 33110 000 001112345789999999 45 699999999
Q ss_pred CeEEEEEecCCC
Q 014104 416 KYIRLWKFNYSD 427 (430)
Q Consensus 416 g~v~vw~~~~~~ 427 (430)
|.|++|++++|+
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999999874
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=289.67 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=247.3
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
......+.+|.+.|++++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+++++.|+ ++.|+.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4467789999999999999 455 9999999999999999999999999866 5677899999999999 8889999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCe-----------eeEEeecCCC--CeEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRK-----------CSQIIRMHCA--PVTSL 239 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~-----------~~~~~~~~~~--~i~~~ 239 (430)
|+.+++.............+++.+.+..+++++.+ |.|++||+.++. .+..+..|.+ .+.++
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99988755443344445567777777779999998 999999987653 3445556666 99999
Q ss_pred EecCC-CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 014104 240 SLSED-QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 240 ~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
+|+|+ +.+++++.||.|++||+++ ++.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++.+..+. +.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 99976 8999999999999999998 677888876 78899999999999999999999999999999999888877 66
Q ss_pred CceEEEEEeeCCCCeEEEEcCCC--------------eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDG--------------VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
..+..+. ++|+++++++++.++ .+++||+.+++.+..+..|
T Consensus 260 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------ 314 (369)
T 3zwl_B 260 CPLNTAV-ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH------------------------ 314 (369)
T ss_dssp SCEEEEE-ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC------------------------
T ss_pred CCceeEE-ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc------------------------
Confidence 8899998 999999999999888 8999999999988888654
Q ss_pred CCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 384 AGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...|++++| ++++|++|+.||.|++|+++.+
T Consensus 315 ------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 315 ------------FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ------------SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ------------cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 448899998 5889999999999999999764
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5e-38 Score=306.95 Aligned_cols=312 Identities=16% Similarity=0.253 Sum_probs=256.7
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.....+..+.+|.+.|.+++| +++ +|++++.|+.|++||.. ++.+..+..+ ..+..++|+|+++.++ ++.++.++
T Consensus 209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 344567889999999999999 556 99999999999999965 5677777765 5567799999999998 88899999
Q ss_pred EEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 176 IWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+||.+.... .+..+... ...+++.+++..+++++.||.|++||.. ++.+..+.+|...|.+++|+|+ ..+++++.|
T Consensus 288 ~w~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 288 LWNRNGQLLQTLTGHSSS-VWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EEETTSCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeCCCcEEEEEecCCCC-eEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999866542 23333333 3345566667779999999999999975 5566788899999999999986 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+.|++||. +++.+..+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++ |+|++++|
T Consensus 366 g~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~-~s~d~~~l 441 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDDQTI 441 (577)
T ss_dssp SEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEE-ECTTSSEE
T ss_pred CEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEE-ECCCCCEE
Confidence 99999995 5788888887 8889999999999999999999999999995 5788889999999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccCccee----------eeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIGSASS----------SSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----------~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++++.|+.|++||. +++.+..+..|...+.. ++++.|+.+++|+. .+..+.. ..+|...|++++
T Consensus 442 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~----~~~~~~~-~~~h~~~v~~l~ 515 (577)
T 2ymu_A 442 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRGVA 515 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET----TSCEEEE-EECCSSCEEEEE
T ss_pred EEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC----CCCEEEE-EeCCCCCEEEEE
Confidence 99999999999996 47788888877766644 44555556666552 2233333 357899999999
Q ss_pred E--cCeEEEEeeCCCeEEEEEec
Q 014104 404 V--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
| |+++|++++.||.|++||..
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT
T ss_pred EcCCCCEEEEEECcCEEEEEeCC
Confidence 9 68999999999999999964
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=286.86 Aligned_cols=243 Identities=19% Similarity=0.277 Sum_probs=218.0
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
....+.||...|.+++++ ++ ++++|+.|++|++||+.+++.+..+..+ ..+..++|+|++++|+ ++.++.+++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 345789999999999994 44 9999999999999999999999888865 4566799999999999 888999999999
Q ss_pred CCCcccccC-CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 180 NGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
++++..... ........+++.+++..+++|+.||.|++||+++++.+..+.+|..+|.+++|+|+ .+|++|+.|+.|+
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 987754322 22233455677777788999999999999999999999999999999999999986 8999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++....+.+ |...|.+++|+|++++|++++.|++|++||+++++++..+.+|.+.|.+++ |+|++++|++++
T Consensus 232 iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~-~s~~g~~l~s~~ 309 (321)
T 3ow8_A 232 IYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK-YNGNGSKIVSVG 309 (321)
T ss_dssp EEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEE
T ss_pred EEECCCcceeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE-ECCCCCEEEEEe
Confidence 999999999999987 888999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCeEEEEEcC
Q 014104 338 IDGVLRVLDQN 348 (430)
Q Consensus 338 ~dg~i~vwd~~ 348 (430)
.||.|++||..
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999964
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=296.44 Aligned_cols=313 Identities=12% Similarity=0.138 Sum_probs=252.0
Q ss_pred EEeccccceeEEEec-CC--eEEEEeCCCeEEEEec----CCCe------eEEeeec----------C-CceeEEEEecC
Q 014104 107 QWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSL----EGYK------CVEEYSL----------P-NAASLVDFDFD 162 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~-~~~~~~~~~~~ 162 (430)
....|.+.|.+++|+ ++ +|++|+.||.|++||+ .+++ ....+.. + ..+..++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 344567999999994 33 8999999999999999 8887 4555544 2 36788999999
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC-----
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP----- 235 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----- 235 (430)
+++|+ ++.++.|++||...... .+..+. .....+++.+.+..+++++.||.|++||+.+++.+..+..+...
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCC-SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeccCCC-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999 88899999999544332 223233 23445566666777999999999999999999999988877776
Q ss_pred ----------eEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 236 ----------VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 236 ----------i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+.++.|+++..+++++.||.|++||+++++.+..+.. |...|.+++|+|++++|++++.|+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 8999999888899999999999999999999888876 88899999999999999999999999999999
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEE
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIE 375 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~ 375 (430)
+++.+..+..|...|.++. |+|++ ++++++.||.|++||+.+++.+..+..|...+ .+++++.||.+.
T Consensus 278 ~~~~~~~~~~~~~~i~~~~-~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSAS-WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SBSCSEEECCCSSCEEEEE-EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCccceEecCCCccEEEEE-ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9999999999999999999 99999 99999999999999999999888888766544 556666777777
Q ss_pred EeecccccCC-----------------cccccCCCCCCC--CeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 376 RNEGRRLSAG-----------------CCIDRIPKTIRP--PITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 376 ~~~~~~~~~~-----------------~~~~~~~~~h~~--~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+|+....... ..+..+ ..|.. .|++++| ++++|++++.||.|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7766543300 023333 45654 9999999 58899999999999999986
No 28
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-39 Score=305.64 Aligned_cols=321 Identities=13% Similarity=0.135 Sum_probs=240.9
Q ss_pred cccCCEeEEEE-eccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCC---Ce---eEEeeecCCceeEEEEecCCCEEE
Q 014104 98 LEEGRIDIDQW-KAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG---YK---CVEEYSLPNAASLVDFDFDESKIV 167 (430)
Q Consensus 98 ~~~~~~~~~~l-~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~ 167 (430)
|......+.++ .+|.+.|++++| + ++ +|++|+.||+|++||+.+ +. ....+.+...+..++|+++++.|+
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE
Confidence 55666788888 899999999999 4 45 999999999999999876 33 344555567788899999999998
Q ss_pred -EEeCCeEEEEEcC---CCcccc--c--------C-CCCceeeeeEEE----EcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 168 -GLIGTRICIWRRN---GLRSVF--P--------S-REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 168 -~~~~~~i~vwd~~---~~~~~~--~--------~-~~~~~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
++.|+.|++||++ .++... . . ..++...+.++. +.+..+++++.||.|++||+++++++..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 8889999999995 332111 0 0 000111223333 2355699999999999999999999999
Q ss_pred eec--CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe----cCCCEEEEEeCCCeEEE
Q 014104 229 IRM--HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN----PCSRLVFAGTTAGYASC 301 (430)
Q Consensus 229 ~~~--~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~i 301 (430)
+.. |.+.|++++|+|+ .++++|+.||.|++||+++++.+..+...+...|.+++|+ |++.+|++|+.||.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 8899999999976 8999999999999999999999998874477799999655 56789999999999999
Q ss_pred EeCCCCceeeeeec--------------------------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 302 WDLRTMKSLWETRI--------------------------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 302 ~d~~~~~~~~~~~~--------------------------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
||+++++.+..+.+ |...|.+++ ++ ++++|++|+.||.|++||+.+++....
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-VS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-EE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-EC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99999887776654 445678888 77 678999999999999999999999999
Q ss_pred EEeccCcc---eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c--CeEEEEeeCCCeEEEEE
Q 014104 356 CVMDIGSA---SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G--MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 356 ~~~~~~~~---~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~--~~~l~t~~~Dg~v~vw~ 422 (430)
+..|.... .....+.+..+.... ......... .....|...|+++++ + +.+|+||+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRK-MKRTSTHSV-DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEE-CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEe-ccccccccc-CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 88764322 222233333332211 111111111 333569999999999 3 66999999999999995
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-38 Score=291.42 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=234.8
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeee---cCCceeEEEEec-CCCEEE-EEeC
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDF-DESKIV-GLIG 171 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~-~~~~ 171 (430)
........+.+|.+.|.+++| +++ +|++|+.||.|++||+.+++....+. +...+..++|+| +++.++ ++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 345677889999999999999 444 99999999999999999888777765 346678899999 677777 8889
Q ss_pred CeEEEEEcCCCcc-cccCCCC--ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-E
Q 014104 172 TRICIWRRNGLRS-VFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-L 246 (430)
Q Consensus 172 ~~i~vwd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~ 246 (430)
+.|++||+.+... .+..+.. .....+++.+.+..+++++.||.|++||+ +++.+..+.+|...|.+++|+|+ . +
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999999997543 2333332 23456677777788999999999999999 67888999999999999999986 5 8
Q ss_pred EEEEeCCCeEEEEeCCC----CceeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----
Q 014104 247 IISGSSLGSIAISGLSS----DQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISP---- 317 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 317 (430)
+++++.|+.|++||+++ +..+..+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+..|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 99999999999999998 66677674 888999999999 99999999999999999999988877776553
Q ss_pred -------------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 318 -------------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 318 -------------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
..+..++ ++|++++ +++.||.|++||+.+++++..+..+.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~-~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~------------------------ 350 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAG-RYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN------------------------ 350 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEE-CBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT------------------------
T ss_pred ccccceEEeccCCCCceEEE-ecCCccc--ccCCCCeEEEEecCCCceeeeecCCC------------------------
Confidence 2334455 7777776 78899999999999999998887532
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|...+.+++| ++++|++|+ ||.|+|||+++
T Consensus 351 ----------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 ----------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ----------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ----------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 2346777777 588899997 99999999875
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.4e-39 Score=295.21 Aligned_cols=314 Identities=13% Similarity=0.099 Sum_probs=241.3
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.+..|.++|.+++| +++ +|++|+.|+.|++||+.+++ .+..+..+ ..+..++|+|+++.++ ++.|+.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 35669999999999 455 99999999999999999987 78888765 5677899999999999 8889999999998
Q ss_pred CCccc----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---e-EEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 181 GLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---S-QIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 181 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~-~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+++.. ...+ ......+++.+.+..+++++.||.|++||+.+++. . .....|...|.+++|+|+ +++++++
T Consensus 83 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 87622 1222 23344556666677799999999999999988762 2 333568899999999976 7999999
Q ss_pred CCCeEEEEeC------------------CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 252 SLGSIAISGL------------------SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 252 ~dg~i~vwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
.||.|++||+ .+++.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++++..+
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999995 36778888876 8889999999999999999999999999999999999999
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC--Cc--eEEEEEeccCcceeeeccCCceEEEeecccccCCccc-
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT--GE--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI- 388 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~--~~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~- 388 (430)
..|...|.+++ |+|++.+|++| .|+.|++||+.+ ++ .+..+..+... .......+..+..... .+...
T Consensus 241 ~~~~~~v~~~~-~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 313 (372)
T 1k8k_C 241 ASETLPLLAVT-FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS----SQRGLTARERFQNLDK-KASSEG 313 (372)
T ss_dssp ECSSCCEEEEE-EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------------CHHHHHHHCCC-CC----
T ss_pred ccCCCCeEEEE-EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc----hhhhcchhhhhhhccc-cccccc
Confidence 99999999999 99999988888 899999999987 53 22222111110 0000000101100000 00111
Q ss_pred -----ccCCCCCCCCeeEEEE---cC---eEEEEeeCCCeEEEEEecCCCcC
Q 014104 389 -----DRIPKTIRPPITCLAV---GM---KKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 389 -----~~~~~~h~~~v~~v~~---~~---~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..+..+|...|+++++ +| .+|+||+.||.|++|++.+++++
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 3344589999999986 35 89999999999999999876544
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.8e-37 Score=278.98 Aligned_cols=278 Identities=14% Similarity=0.173 Sum_probs=233.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE---Eeee---cCCceeEEEEecCCCEEE-EEeCCeE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV---EEYS---LPNAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~---~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
......+|.+.|.+++| +++ ++++++ ||.|++||+.+++.. ..+. ....+..++|+|+++.++ ++.++.|
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 34445589999999999 455 888888 999999999876533 3332 346678899999999988 8889999
Q ss_pred EEEEcCCCcc--c--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 175 CIWRRNGLRS--V--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 175 ~vwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
++||+++++. . +..+.. ....+++.+.+..+++++.||.|++||+++++.+..+..|...|.+++|+|+ +.+++
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999998762 1 222222 2344556666677999999999999999999999999999999999999976 79999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++ |+|+
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~ 276 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK-FAYC 276 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEE-ECTT
T ss_pred EecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEE-ECCC
Confidence 9999999999999999988886 6778999999999999999999999999999987654 6778999999999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
+++|++++.||.|++||+.+++.+.... |...|++++| +++
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-------------------------------------ESSSVLSCDISVDDK 319 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------------CSSCEEEEEECTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCeEEEEec-------------------------------------CCCcEEEEEECCCCC
Confidence 9999999999999999999988774432 3457889888 588
Q ss_pred EEEEeeCCCeEEEEEec
Q 014104 408 KVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~~~ 424 (430)
+|++++.||.|++|++.
T Consensus 320 ~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 320 YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEe
Confidence 99999999999999974
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-38 Score=295.14 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=250.2
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc--cC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF--PS 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~--~~ 188 (430)
.+++++| +++ +|++|+.||.|++||+.+++....+..+.......++++++.|+ ++.|+.|++||+++++... ..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 3447888 455 99999999999999999888777777665556678899999998 8889999999999877543 23
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
+... +..+++.+.+..+++++.||.|++||+.+++.+..+.+|.+.|.+++|+|+ .++++++.|+.|++||+++++.+
T Consensus 138 h~~~-v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 138 HVSE-ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCc-cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 3333 345566666777999999999999999999999999999999999999976 89999999999999999999999
Q ss_pred EEEecC--CCCCe---------------------EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEE
Q 014104 268 ATLRST--DCTGI---------------------KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSL 323 (430)
Q Consensus 268 ~~~~~~--~~~~v---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l 323 (430)
..+..+ +...+ .+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 888752 23344 445557899999999999999999999988777664 477899999
Q ss_pred EEeeCCCC-eEEEEcCCCeEEEEEcCCCce-EEEEEeccC----------cceeeeccCCceEEEeecccccCCccc---
Q 014104 324 QHLQNDTS-TLVVGGIDGVLRVLDQNTGEV-LSRCVMDIG----------SASSSSNKVSGVIERNEGRRLSAGCCI--- 388 (430)
Q Consensus 324 ~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~----------~~~~~~~s~d~~v~~~~~~~~~~~~~~--- 388 (430)
+ |+|+++ +|++|+.||.|++||+++++. +..+..+.. ...+++++.|+.+.+|+.........+
T Consensus 297 ~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 375 (420)
T 3vl1_A 297 T-VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEF 375 (420)
T ss_dssp E-ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECT
T ss_pred E-EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceec
Confidence 9 999999 999999999999999998754 677776433 226788889999998886653322211
Q ss_pred --ccCCCCCCCCeeEEEE--cCe---EEEEeeCCCeEEEEEecC
Q 014104 389 --DRIPKTIRPPITCLAV--GMK---KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 --~~~~~~h~~~v~~v~~--~~~---~l~t~~~Dg~v~vw~~~~ 425 (430)
......|...|.+++| ++. .+++++.+|.+.+|+++.
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1123467889999998 566 788888899999999875
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-38 Score=293.79 Aligned_cols=242 Identities=18% Similarity=0.302 Sum_probs=215.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...++.+|.+.|.+++| +++ +|++|+.|++|++||+.+++++..+.+| ..+..++|+|+++.++ ++.|+.|++||+
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999 455 9999999999999999999999998876 5677899999999998 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC--------------
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-------------- 243 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-------------- 243 (430)
.++..+ +..+... +..+.+.+++..+++|+.||+|++||+.++++...+.+|...|.+++|+|
T Consensus 222 ~~~~~~~~~~~h~~~-v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCcc-EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 988743 3333333 23344555566699999999999999999999999999999999999997
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 244 -------DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 244 -------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
+.++++|+.|+.|++||+++++++..+.+ |...|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 45899999999999999999999999987 8889999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...|++++ |+|++.+|++|+.||+|++|+++
T Consensus 380 ~~~v~~l~-~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 EHFVTSLD-FHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEE-ECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEE-EcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999 99999999999999999999863
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=298.59 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=251.5
Q ss_pred cccceeEEEe-cCC--eEEEE----------eCCCeEEEEecCCCe---eEEeeecCCceeEEEEecCCCEEE-EEeCCe
Q 014104 111 HSVGVDQCRM-KRG--LILTG----------VGDKVMRLWSLEGYK---CVEEYSLPNAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~----------~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
+...|.+++| +++ ++++| +.|+.|++||+.+++ .+..+.+...+..++|++++++|+ ++.|+.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 4457889999 554 89999 899999999999875 455565667788899999999999 788999
Q ss_pred EEEEEcCC---Cc-c--cccCCCCceeeeeEEEEc-CCceEEEecCCeEEEEECCCCe------eeE---EeecCCCCeE
Q 014104 174 ICIWRRNG---LR-S--VFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRK------CSQ---IIRMHCAPVT 237 (430)
Q Consensus 174 i~vwd~~~---~~-~--~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~------~~~---~~~~~~~~i~ 237 (430)
|++||+.+ +. . .+..+... +..+++.+. +..+++++.||.|++||+.+++ ... .+..|...|.
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSS-VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSC-CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred EEEeecccccccccchhhccCCccc-eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 99999987 22 2 22333332 334555555 5569999999999999999876 332 3367889999
Q ss_pred EEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC-----CCCeEEEEEecCC-CEEEEEeCCC---eEEEEeCCC
Q 014104 238 SLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD-----CTGIKTLCYNPCS-RLVFAGTTAG---YASCWDLRT 306 (430)
Q Consensus 238 ~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~ 306 (430)
+++|+|+ .++++++.|+.|++||+++++.+..+..+. ...|.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999975 789999999999999999999998888632 6789999999997 6899999998 999999998
Q ss_pred C-ceeeeee-cCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc-----------eeeeccCCc
Q 014104 307 M-KSLWETR-ISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA-----------SSSSNKVSG 372 (430)
Q Consensus 307 ~-~~~~~~~-~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~~~~~s~d~ 372 (430)
+ +++..+. +|...|.+++ |+| ++++|++++.||.|++||+.+++++..+..|...+ .+++++.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLD-WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEE-ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCCcEEeecCccCceeEEE-eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 6 6777788 8999999999 999 99999999999999999999999999998876644 566677777
Q ss_pred eEEEeecccccCCcccc-------------------------------cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEE
Q 014104 373 VIERNEGRRLSAGCCID-------------------------------RIPKTIRPPITCLAV--GMKKVVTTHNSKYIR 419 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~-------------------------------~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~ 419 (430)
.+.+|+........... ..+..|..++++++| +|++|++|+.|+.|+
T Consensus 329 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 329 KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp EEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred cEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 77777765443221110 112236777877777 799999999999999
Q ss_pred EEEecCCC
Q 014104 420 LWKFNYSD 427 (430)
Q Consensus 420 vw~~~~~~ 427 (430)
||++.+++
T Consensus 409 ~w~~~~~~ 416 (416)
T 2pm9_A 409 ITNPKISG 416 (416)
T ss_dssp CBCCCCC-
T ss_pred EEEeccCC
Confidence 99998753
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=284.65 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=229.7
Q ss_pred EeEEEEeccccceeEEEe-cCC--eEEEEeC---CCeEEEEecCCCeeEEe--eecCCceeEEEEecC---CCEEE-EEe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG--LILTGVG---DKVMRLWSLEGYKCVEE--YSLPNAASLVDFDFD---ESKIV-GLI 170 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~---dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~---~~~l~-~~~ 170 (430)
.....+.+|.+.|.+++| +++ ++++|+. ||.|++||+.+++.... +.+...+..++|+|+ +..++ ++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 344567899999999999 445 5566766 99999999998876544 344567888999998 58887 888
Q ss_pred CCeEEEEEcCCCc-c--cccCCCCceeeeeE------EEEcCCceEEEecCCeEEEEECCCCe-eeEEeecCCC----Ce
Q 014104 171 GTRICIWRRNGLR-S--VFPSREGTFMKGLC------MRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCA----PV 236 (430)
Q Consensus 171 ~~~i~vwd~~~~~-~--~~~~~~~~~~~~~~------~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i 236 (430)
|+.|++||+.+++ . .+..+...+ ..+. +.+.+..+++++.||.|++||+++++ .+..+..|.+ .+
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEII-NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCE-EEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCeEEEEeCCCCCccEEEEEecccce-EEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 9999999999876 2 233333332 2222 23456679999999999999999887 6777776655 89
Q ss_pred EEEE----ecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEeCCCCc
Q 014104 237 TSLS----LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP---CSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 237 ~~~~----~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+++ |+|+ .++++++.||.|++||+++++...... +...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 9998 5654 899999999999999999988865544 778999999999 99999999999999999999887
Q ss_pred eeeeee-----cCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 309 SLWETR-----ISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 309 ~~~~~~-----~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.+..+. +|...|.+++ |+|+++ +|++++.||.|++||+.++............. ...+...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~-----~~~~~~~------- 312 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVR-HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM-----GVAGSVS------- 312 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEE-EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC-----CCCCEEE-------
T ss_pred cccceeeeccCCCcCCEEEEE-ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc-----ccccccc-------
Confidence 766555 8999999999 999998 89999999999999998765443221111000 0000100
Q ss_pred cCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeEEEEEecCCCc
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
......+|...|++++| ++++|+ +++.||.|++|++.+.+.
T Consensus 313 -----~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 313 -----LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -----EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred -----eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 01112457789999999 477787 899999999999987654
No 36
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=304.60 Aligned_cols=299 Identities=9% Similarity=0.000 Sum_probs=217.6
Q ss_pred EEEeCCCeEEEEecCCCeeE----EeeecC-CceeEEEEecC------CCEEE-EEeCCeEEEEEcCCCccc------c-
Q 014104 126 LTGVGDKVMRLWSLEGYKCV----EEYSLP-NAASLVDFDFD------ESKIV-GLIGTRICIWRRNGLRSV------F- 186 (430)
Q Consensus 126 ~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~~~------~~~l~-~~~~~~i~vwd~~~~~~~------~- 186 (430)
++++.|++|+|||+.+++.. ..+.++ +.+..++|+|+ +..|+ ++.|++|++||+.++... .
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 44567899999999877642 334554 56788999997 46788 888999999999866421 0
Q ss_pred ---cCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEE--EecCC--CEEEEEeCCCeEE
Q 014104 187 ---PSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSL--SLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 187 ---~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~--~~~~~--~~l~~~~~dg~i~ 257 (430)
....++...+.++.+.. ..|++|+.||+|++||+++++ +...+.+|.+.|+++ .++++ .+|++|+.|++|+
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 01112223344555433 359999999999999998764 456788999999999 46664 6899999999999
Q ss_pred EEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 258 ISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+||+++++....+.++.. ..|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++ |+|++++|++|
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva-~Sp~g~~l~Sg 415 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG-VSRLHPMVLAG 415 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEE-CCSSCCBCEEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEE-eCCCCCeEEEE
Confidence 999999888777765322 2588999999999999999999999999999998888999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEe-----ccCcceeeeccCCceE-EEeecccc---cCCcccccCCCCCCCCeeEEEEcC-
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVM-----DIGSASSSSNKVSGVI-ERNEGRRL---SAGCCIDRIPKTIRPPITCLAVGM- 406 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~s~d~~v-~~~~~~~~---~~~~~~~~~~~~h~~~v~~v~~~~- 406 (430)
+.||+|++||+..+ .+..+.. +...+..+++++++.+ ..++...+ ...........+|...|++|+|++
T Consensus 416 s~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 416 SADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp ETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCS
T ss_pred ECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999999998753 2222111 1112346788888874 33332222 111122233467999999999953
Q ss_pred ----eEEEEeeCCCeEEEEEecCC
Q 014104 407 ----KKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 407 ----~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..+++|+.||.||||++...
T Consensus 495 ~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 495 SAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCccHHHHhhccCceEEEEEcccc
Confidence 38999999999999998754
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.2e-37 Score=305.37 Aligned_cols=304 Identities=17% Similarity=0.209 Sum_probs=238.1
Q ss_pred ccCCEeEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCC-----eeEEeeecC-CceeEEEEecCCCEEE-E
Q 014104 99 EEGRIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGY-----KCVEEYSLP-NAASLVDFDFDESKIV-G 168 (430)
Q Consensus 99 ~~~~~~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~-~ 168 (430)
..+......+++|.+.|++++++ ++ +|+||+.|++|++||+.+. .....+.+| ..+..++|++++++|+ +
T Consensus 369 ~~~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 369 AAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp HCSSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred hcccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEE
Confidence 34455667899999999999994 33 8999999999999998753 345666766 5677899999999999 8
Q ss_pred EeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC
Q 014104 169 LIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE 243 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~ 243 (430)
+.|+.|++||+.++... +..|... +..+++.+++..+++++.|++|++||.......... .+|...|.+++|+|
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKD-VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSC-EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCC-EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 88999999999987643 3444444 344566667777999999999999998654333222 46888999999997
Q ss_pred C---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 244 D---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 244 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
+ ..+++|+.|++|++||+++++....+.+ |...|++++|+|++++|++|+.||.|++||+++++.+..+..+ ..|
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v 605 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVI 605 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcE
Confidence 5 4799999999999999999999999887 8889999999999999999999999999999999988887654 679
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 400 (430)
.+++ |+|++.+|++++ ++.|++||+++++.+..+..+....... ....+ ......+...++
T Consensus 606 ~~~~-~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~~ 666 (694)
T 3dm0_A 606 HALC-FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK-ADNSG----------------PAATKRKVIYCT 666 (694)
T ss_dssp EEEE-ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------------------------------CCCCEE
T ss_pred EEEE-EcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc-ccccc----------------cccCCceeEEee
Confidence 9998 999998887765 5679999999999988886543311000 00000 000012233578
Q ss_pred EEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 401 CLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 401 ~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+++| +|++|+||+.||+|+||++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 8888 69999999999999999985
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.8e-37 Score=284.82 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=239.9
Q ss_pred ccCCEeEEEEecccccee--EEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEE-EEeCCe
Q 014104 99 EEGRIDIDQWKAHSVGVD--QCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 99 ~~~~~~~~~l~~h~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
......+....+|.+.+. ++.++++.+++++.|+.|++||+.+++....+.. ...+..++|+|++++|+ ++.+|.
T Consensus 78 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 157 (401)
T 4aez_A 78 NTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGL 157 (401)
T ss_dssp CCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCe
Confidence 334445666678887654 4566667888999999999999999998888776 35678899999999998 888999
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC-CCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|++||+++++.+.... ++...+.++.+.+..+++++.||.|++||++ .+..+..+.+|.+.|.+++|+|+ .++++|+
T Consensus 158 i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 158 VDIYDVESQTKLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EEEEETTTCCEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECcCCeEEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9999999877433221 3333456667777789999999999999998 46678889999999999999976 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
.|+.|++||+++++.+..+.. |...|.+++|+|++. ++++|+ .|+.|++||+++++.+..+. +...|.+++ |+|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~-~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI-WSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE-ECS
T ss_pred CCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE-ECC
Confidence 999999999999999988876 888999999999774 566655 79999999999999988886 557899999 999
Q ss_pred CCCeEEE--EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--
Q 014104 329 DTSTLVV--GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-- 404 (430)
Q Consensus 329 ~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 404 (430)
+++++++ |+.||.|++||+.+++....... .+|...|++++|
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----------------------------------~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----------------------------------PAHDTRVLYSALSP 359 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----------------------------------ECCSSCCCEEEECT
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEe----------------------------------cCCCCCEEEEEECC
Confidence 9999999 44899999999998766555432 235568899988
Q ss_pred cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 405 GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 405 ~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
++++|++++.||.|++|++.+++.
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC---
T ss_pred CCCEEEEEeCCCcEEEEECCCCcc
Confidence 588999999999999999998764
No 39
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-37 Score=275.28 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=208.2
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+..+++.+| +.+..++|+|++..|+ ++.|+.|++||++++..+ +..+.. ......+.+.+..+++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 345566665 5688899999999999 888999999999988643 333333 34556777788889999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNP-CSRLVFAGTT 295 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 295 (430)
|+.+++++..+.+|.+.|.+++|+|+ .++++|+.|++|++||++++.. ...+.+ |...|.+++|+| ++..|++|+.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-CCSCEEEEEECTTCTTEEEEEET
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-cCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999986 7999999999999999998744 455665 888999999999 6789999999
Q ss_pred CCeEEEEeCCCCceeeeee-cCCCceEEEEEeeC--CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 296 AGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQN--DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|++|++||++++.....+. +|...+..+. ++| ++.+|++|+.|++|++||+++++++.++.+|.
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~------------ 228 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM------------ 228 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEE-ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS------------
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEE-EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC------------
Confidence 9999999999877766654 4557788887 665 77899999999999999999999999887644
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|++++| ++.+|++|+.||+|++||+.+++
T Consensus 229 ------------------------~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 229 ------------------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 47888888 46789999999999999998765
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=278.25 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=196.5
Q ss_pred eccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee----cC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCC
Q 014104 109 KAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS----LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~ 181 (430)
..|...|.+++| +++.|++|+.||+|+|||+.+++.+.... +| ..+..++|+|++++|+ ++.|+.|++||+++
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 346678999999 55699999999999999999887654433 34 5678899999999999 88999999999998
Q ss_pred Cccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeCCC
Q 014104 182 LRSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSSLG 254 (430)
Q Consensus 182 ~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~dg 254 (430)
++.+ +..|... +..+++.+.+.. +++++.||+|++||++++++...+. .|...+.+++|+|+ .++++|+.||
T Consensus 159 ~~~~~~~~~h~~~-V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVVLSSYRAHAAQ-VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEEEEEECCCSSC-EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CcEEEEEcCcCCc-eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 8753 3344433 233445555544 7899999999999999999887764 45567999999974 6899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-e
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-T 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~ 332 (430)
+|++||+++++++..+.+ |...|++++|+|++ ++|++|+.|++|++||+++++.+ .+.+|.+.|++++ |+|+++ +
T Consensus 238 ~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~-~sp~~~~l 314 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDAT-WSPLNHSL 314 (344)
T ss_dssp EEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEE-ECSSSTTE
T ss_pred cEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEE-EeCCCCeE
Confidence 999999999999999988 88899999999998 57999999999999999988765 5789999999999 999987 5
Q ss_pred EEEEcCCCeEEEEEcCCCc
Q 014104 333 LVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~ 351 (430)
|++++.||+|++|++.+..
T Consensus 315 las~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEEETTSCEEEEECCC--
T ss_pred EEEEcCCCeEEEEECCCCC
Confidence 6789999999999998654
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-36 Score=322.24 Aligned_cols=318 Identities=15% Similarity=0.216 Sum_probs=261.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
....+.+|.+.|++++| +++ ++++|+.||+|++||+.+++.+..+.+| ..+..++|+|++++++ ++.|+.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34578899999999999 556 9999999999999999999999999876 5677899999999999 888999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
.+++.+ +..+... +..+++.+.+. .+++|+.||.|++||+.+++++..+.+|.+.|.+++|+|+ +.+++++.||
T Consensus 687 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CCCceEEEEcCCCCc-EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 988753 3333333 23344444223 4889999999999999999999999999999999999986 8999999999
Q ss_pred eEEEEeCCCCceeEEEe------------------------------------------------------cCCCCCeEE
Q 014104 255 SIAISGLSSDQRVATLR------------------------------------------------------STDCTGIKT 280 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~------------------------------------------------------~~~~~~v~~ 280 (430)
.|++||+.+++....+. ..|...|.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 99999998776544332 136678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----------
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---------- 350 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---------- 350 (430)
++|+|+++++++++.||.|++||+.+++.+..+.+|.+.|.+++ |+|++++|++++.||.|++||+.++
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~-~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM-FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE-ECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999997531
Q ss_pred -------------------------------------ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 351 -------------------------------------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 351 -------------------------------------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
..+..+...+.+..+++++.+|.+.+++... +... ....
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---~~~~-~~~~ 1000 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVF-SSGV 1000 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---TSCE-EECC
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---Ccee-eecc
Confidence 1122333344455677777888777766533 2222 2335
Q ss_pred CCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 394 TIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 394 ~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+|...|++++| ++++|++++.||.|++|++.+++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 78999999999 68899999999999999998764
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-38 Score=291.19 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=219.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC--eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.+..|.++|++++| +++ +|++|+.|+.|++||+.++ +.+..+..| ..+..++|+|++++|+ ++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557889999999 455 9999999999999999988 677777766 5678899999999998 8889999999999
Q ss_pred CCc---cc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeec-CCCCeEEEEecCC-CEEEEE
Q 014104 181 GLR---SV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRM-HCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 181 ~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~i~~~~~~~~-~~l~~~ 250 (430)
+++ .. +..+.. ....+++.+++..+++++.|+.|++||+++++ ....+.. |...|.+++|+|+ ++++++
T Consensus 86 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 876 22 222332 23445555566779999999999999999887 4677777 9999999999986 799999
Q ss_pred eCCCeEEEEeCC------------------CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce---
Q 014104 251 SSLGSIAISGLS------------------SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--- 309 (430)
Q Consensus 251 ~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 309 (430)
+.|+.|++||++ .++.+..+ . |...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999985 34455556 3 888999999999999999999999999999999887
Q ss_pred -eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc--eEEEEEeccCcce---------------eeeccCC
Q 014104 310 -LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE--VLSRCVMDIGSAS---------------SSSNKVS 371 (430)
Q Consensus 310 -~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~---------------~~~~s~d 371 (430)
+..+.+|...|.+++ |+|++++|++++.++.+ +|+...+. ....+........ ...++..
T Consensus 243 ~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLL-WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECCCEECSSSCEEEEE-EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred eeEeecCCCCceEEEE-EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 888999999999999 99999999999877666 66655321 1122211111000 0000000
Q ss_pred ceEEEeeccccc-CCcccccCCCCCCCCeeEEEEc---Ce---EEEEeeCCCeEEEEEe
Q 014104 372 GVIERNEGRRLS-AGCCIDRIPKTIRPPITCLAVG---MK---KVVTTHNSKYIRLWKF 423 (430)
Q Consensus 372 ~~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~---~~---~l~t~~~Dg~v~vw~~ 423 (430)
.... ...... .......+...|...|+++++. +. .|+|||.||.|+|||+
T Consensus 321 ~~~~--~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTF--RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccc--cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 000000 0012233456799999999972 22 6999999999999985
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-36 Score=269.29 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=198.1
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC--CeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
..+.+|.+.|++++| +++ +|++|+.|++|++||+.+ .+.+.++.+| ..+..++|+++.
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~----------------- 65 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK----------------- 65 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------------
Confidence 467899999999999 456 999999999999999874 3566677665 334445554320
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC---CCEEEEEeCCCe
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE---DQLIISGSSLGS 255 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~ 255 (430)
.+..|++|+.||+|++||+++++ .+..+.+|...|.+++|+| +.++++++.|+.
T Consensus 66 ---------------------~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 66 ---------------------FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp ---------------------GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ---------------------cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 12237889999999999998774 5667788999999999997 469999999999
Q ss_pred EEEEeCCCCce--eEEEecCCCCCeEEEEEecC-------------CCEEEEEeCCCeEEEEeCCCCc----eeeeeecC
Q 014104 256 IAISGLSSDQR--VATLRSTDCTGIKTLCYNPC-------------SRLVFAGTTAGYASCWDLRTMK----SLWETRIS 316 (430)
Q Consensus 256 i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~ 316 (430)
|++||++++.. ...+.+ |...|.+++|+|+ +++|++|+.|++|++||+++++ ....+.+|
T Consensus 125 v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEecCCCceeeeeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 99999987632 345555 8889999999997 5799999999999999998765 56678899
Q ss_pred CCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 317 PNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 317 ~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
.+.|.+++ |+|++ .+|++++.|++|++||++++.. ......
T Consensus 204 ~~~V~~v~-~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--------------------------------- 249 (297)
T 2pm7_B 204 SDWVRDVA-WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--------------------------------- 249 (297)
T ss_dssp SSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS---------------------------------
T ss_pred CCceEEEE-ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee---------------------------------
Confidence 99999999 99985 8999999999999999976431 111100
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...|...|.+++| ++++|++++.||+|+||+...
T Consensus 250 ~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1245678999999 588999999999999999874
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.5e-37 Score=280.61 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=227.5
Q ss_pred EEeccccceeEEEecC-----C-eEEEEeCCCeEEEEecCCCeeEEeeec------CCceeEEEEecC----CCEEE-EE
Q 014104 107 QWKAHSVGVDQCRMKR-----G-LILTGVGDKVMRLWSLEGYKCVEEYSL------PNAASLVDFDFD----ESKIV-GL 169 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~-----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~----~~~l~-~~ 169 (430)
...+|.++|++++|++ . .+++++.++.|++||+.+++.+..+.. ...+..++|+++ +.+|+ ++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3458999999999952 3 677777788999999998877766652 255788999998 55777 88
Q ss_pred eCCeEEEEEcCCCccc--ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC
Q 014104 170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE 243 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~ 243 (430)
.|+.|++||+.+++.+ +..+... +..+++.+ .+..+++++.||.|++||+++++.+..+ ..|...|.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSC-EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CCCEEEEEEchhceEeeeecCCCCc-EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999987753 3333332 34455555 5556999999999999999999998888 68999999999997
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeEEEe---------------------------cCCCCCeEEEEEecCCCEEEEEeC
Q 014104 244 D-QLIISGSSLGSIAISGLSSDQRVATLR---------------------------STDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 244 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
+ +++++++.||.|++||+++++....+. ..|...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 6 799999999999999999876543222 1277799999998 779999999
Q ss_pred CCeEEEEeCCCCce--------------eeeeecCCCceEEEEEeeCC--CCeEEEEcCCCeEEEEEcCCCceEE----E
Q 014104 296 AGYASCWDLRTMKS--------------LWETRISPNVVYSLQHLQND--TSTLVVGGIDGVLRVLDQNTGEVLS----R 355 (430)
Q Consensus 296 dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~l~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~----~ 355 (430)
|+.|++||+++++. +..+..|...|.+++ |+|+ +++|++|+.||.|++||+.+++... .
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR-FSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC-CEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE-EcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987644 677888999999999 9999 9999999999999999999876432 3
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
+..| .|...|++++| ++++|++|+.||.|++||+.+
T Consensus 329 ~~~~----------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHH----------------------------------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCT----------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred Eccc----------------------------------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3321 13578999999 589999999999999999853
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.3e-36 Score=302.55 Aligned_cols=267 Identities=16% Similarity=0.203 Sum_probs=235.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..+.+.+|.+.|.+++| |++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+++.|+ ++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999 556 9999999999999999999999999865 5678899999999999 888999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC-C-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg 254 (430)
.+++.. +..+.+ ....+++.+.++.+++++.||.|++||+.++ .....+.+|...|.+++|+| + ..+++++.||
T Consensus 85 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 85 NTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 988754 333333 3455677777888999999999999999887 67788889999999999998 5 7999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
.|++||+.+++....+..++...+.+++|+| ++.+|++++.||.|++||+++++.+..+.+|...|.+++ |+|++++
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 242 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPI 242 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSE
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCE
Confidence 9999999999888888875668999999999 999999999999999999999999999999999999999 9999999
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|++++.||.|++||+.+++.+..+..+...+..+++++++
T Consensus 243 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 9999999999999999999999888776666555555554
No 46
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.3e-36 Score=292.92 Aligned_cols=316 Identities=14% Similarity=0.116 Sum_probs=243.4
Q ss_pred EeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCC----ceeEEEEecC-CCEEE-EEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN----AASLVDFDFD-ESKIV-GLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~-~~~~~~ 173 (430)
..+..+.+|.+.|.+++| +++ .+++++.|+.|++||+.+++.+..+..+. .+..++|+|+ ++.++ ++.++.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 357788999999999999 454 79999999999999999999999998764 4788999999 99988 888999
Q ss_pred EEEEEcCCCcccccC-----CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC----CCCeEEEEecCC
Q 014104 174 ICIWRRNGLRSVFPS-----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLSLSED 244 (430)
Q Consensus 174 i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~~~~ 244 (430)
|++||+.+++.+... ........+++. .+..+++++.||.|++||+++++.+..+..+ ...+.++.+..+
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 999999988754433 222223334444 6666999999999999999999999888876 367888888766
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--------------------------------------
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-------------------------------------- 286 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------- 286 (430)
+.+++++.|+.|++||+.+++.+..+.+ |...|.+++| |+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~ 387 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 387 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECC-CSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeC-CCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence 8999999999999999998887777765 4444444443 22
Q ss_pred --------------------------------------------------------------------CCEEEEEeC-CC
Q 014104 287 --------------------------------------------------------------------SRLVFAGTT-AG 297 (430)
Q Consensus 287 --------------------------------------------------------------------~~~l~~~~~-dg 297 (430)
+++|++++. |+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 344455555 66
Q ss_pred eEEEEeCCCCcee-eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-ccCcc------------
Q 014104 298 YASCWDLRTMKSL-WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-DIGSA------------ 363 (430)
Q Consensus 298 ~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~------------ 363 (430)
.|++||+.+++.. ..+..|...|.+++ |+|++++|++++.||.|++||+.+++.+..+.. |...+
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYIS-ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 546 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred eEEEEECCCccccccccCCccCceEEEE-ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccc
Confidence 6666666655443 56677889999999 999999999999999999999998887777655 54444
Q ss_pred --------eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 364 --------SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 364 --------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+++++.|+.+.+|+... .........+|...|++++| +++ |++++.||.|++|+++.+
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKR---PMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSC---TTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cccccCCCEEEEEcCCCcEEEEECCC---CceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 445555566666665533 21233334679999999999 688 999999999999999763
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.1e-36 Score=269.81 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=205.7
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.++..+.+|...|.+++| +++ +|++|+.|++|++||+.+++.+..+.+| ..+..++|++++..++ ++.|+.|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 357789999999999999 555 9999999999999999999999999876 5577899999999999 88999999999
Q ss_pred cCCCcc-cccCCCCceeeeeEEEEc------CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 179 RNGLRS-VFPSREGTFMKGLCMRYF------DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
++.... .+..+... ...+.+.+. +..+++++.|+.|++||+++++....+.+|...|.+++|+|+ .+|++|
T Consensus 136 ~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TTSCEEEEECCCSSC-EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEEeccCCc-EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 986543 23333332 223334332 225999999999999999999999999999999999999986 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEE
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYS 322 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~ 322 (430)
+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred eCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 9999999999999999998874 46899999999999999887655 9999998876665543 34567889
Q ss_pred EEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
++ |+|+|++|++|+.||.|++||+.++
T Consensus 292 ~~-~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LA-WSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EE-ECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EE-ECCCCCEEEEeecCceEEEEEEeec
Confidence 98 9999999999999999999998754
No 48
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-36 Score=271.26 Aligned_cols=248 Identities=15% Similarity=0.222 Sum_probs=213.5
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+...++.+| ..+..++|++++++|+ ++.|+.|++||+.+++.. +..+.. .+..+++.+.+..+++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 445666666 5678899999999999 889999999999887643 233333 23456666677779999999999999
Q ss_pred ECCCC----eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 219 DMYSR----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 219 d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
|+.++ +....+.+|.+.|.++.|+++..+++++.|++|++||+++++.+..+.+ |...|.+++|+|+++++++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEe
Confidence 99875 3566788999999999999888899999999999999999999999987 888999999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 295 TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 295 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
.|+.|++||+++++.+..+.+|...|.+++ |+|++++|++|+.||+|++||+++++.+..+..+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------- 267 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAIC-FFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------- 267 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------------
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEE-EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC---------------
Confidence 999999999999999999999999999999 9999999999999999999999988877665421
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+...|++++| ++++|++|+.||.|++||+.+++
T Consensus 268 -------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 268 -------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp -------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred -------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 12347899999 58999999999999999987765
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-36 Score=305.18 Aligned_cols=203 Identities=9% Similarity=0.045 Sum_probs=169.8
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
...||.+.|++++| +++ +||+|+.||+|++||..+.+....+.+...+..++|+| +++|+ ++.|+.|++||+++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 34589999999999 556 99999999999999999888777766667788999999 88777 8899999999999877
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-----------EEeecCCCCeEEEEecCC--CEEEEE
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-----------QIIRMHCAPVTSLSLSED--QLIISG 250 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~--~~l~~~ 250 (430)
.+........+..+++.+.+..+++|+.||.|++||++++++. ..+.+|.++|++++|+|+ ..+++|
T Consensus 91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 5432222233455666667777999999999999999988754 234678899999999985 689999
Q ss_pred eCCCeEEEEeCCCCceeEEEecC-----------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 251 SSLGSIAISGLSSDQRVATLRST-----------------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
+.||.| +||+++++.+..+..+ |...|.+++|+|+|++|++|+.||.|++||+++++++.
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999 9999999998888752 24679999999999999999999999999999887764
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=278.88 Aligned_cols=289 Identities=15% Similarity=0.194 Sum_probs=228.8
Q ss_pred EeEEEEeccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCCCeeEEeee--------------cCCceeEEEEec-CCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYS--------------LPNAASLVDFDF-DES 164 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~ 164 (430)
.....+.+|.+.|++++| + ++ +|++|+.||.|++||+.+++....+. +...+..++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 345678899999999999 4 55 99999999999999999877665554 446678899999 666
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCC---ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
.++ ++.|+.|++||+.+++...............+.+.++ .+++++.||.|++||+++++.+..+..|.+.|.+++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 777 7789999999999887544333333344455555544 599999999999999999999999999999999999
Q ss_pred ecCC-C-EEEEEeCCCeEEEEeCCCCc-eeEEEe--------------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 241 LSED-Q-LIISGSSLGSIAISGLSSDQ-RVATLR--------------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 241 ~~~~-~-~l~~~~~dg~i~vwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
|+|+ . ++++|+.||.|++||++++. .+..+. ..|...|.+++|+|++++|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 9986 4 69999999999999998776 334331 23677999999999999999999999999999
Q ss_pred CCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 304 LRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 304 ~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
+++++....+..+. ..+.... ....+..+++++.++.|++||+.+++++..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------------- 332 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-------------------- 332 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--------------------
T ss_pred CCCCccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCCcceeeecc--------------------
Confidence 99887665443321 1122222 334456677778899999999999999988865
Q ss_pred cccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|...|++++| ++++|++|+.||.|++|++.+++.
T Consensus 333 ----------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 333 ----------------HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp ----------------CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ----------------CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 4458889888 578899999999999999988764
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.7e-37 Score=288.27 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=219.0
Q ss_pred EEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEe--eecC-CceeEEEEec-CCCEEE-EEeCCeEEE
Q 014104 105 IDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEE--YSLP-NAASLVDFDF-DESKIV-GLIGTRICI 176 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~v 176 (430)
.....+|...|+|++|+ ++ +||+|+.||+|+|||+.+++.... +.+| ..+..++|+| +++.|+ ++.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34678899999999994 33 899999999999999987654433 3344 5688899998 678888 888999999
Q ss_pred EEcCCCcc-cccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe
Q 014104 177 WRRNGLRS-VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS 251 (430)
Q Consensus 177 wd~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~ 251 (430)
||++++.. .+....... ...+++.+.+..+++|+.||.|++||++ ++.+..+.+|...|.+++|+|+ .++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEec
Confidence 99987653 223222222 2345566677779999999999999985 5677888999999999999975 5888999
Q ss_pred CCCeEEEEeCCCCceeEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC------ceEEE
Q 014104 252 SLGSIAISGLSSDQRVATLR--STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN------VVYSL 323 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~l 323 (430)
.|+.|++||+++++....+. ..|...|++++|+|+|++|++++.||.|++||+++++....+..|.. .+...
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999999876544332 23788999999999999999999999999999999887776665542 22333
Q ss_pred EEeeCCCCeEEEEc------------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 324 QHLQNDTSTLVVGG------------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 324 ~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
. ++|++.++++++ .++.|++||..+++.+..+..
T Consensus 351 ~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~--------------------------------- 396 (435)
T 4e54_B 351 A-WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD--------------------------------- 396 (435)
T ss_dssp E-ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC---------------------------------
T ss_pred E-EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC---------------------------------
Confidence 4 667777666654 335799999999988877643
Q ss_pred CCCCCCCeeEE-EE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 392 PKTIRPPITCL-AV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 392 ~~~h~~~v~~v-~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+|...|.++ +| +|++|++|+ |+.|+||+++.++.
T Consensus 397 --~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 397 --PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred --CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 344567665 46 578888876 78999999998864
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.2e-36 Score=271.32 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=229.0
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe----eEEeeecCCceeEEEEecCCC-EEE-EEeCCeEEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASLVDFDFDES-KIV-GLIGTRICIWR 178 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~i~vwd 178 (430)
...+|.+.|.+++| +++ +|++|+.||.|++||+.+++ ......+...+..++|+++++ .|+ ++.++.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 34689999999999 455 99999999999999998877 444444556788899999999 888 88899999999
Q ss_pred c-CCCccc-ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCC---------CeeeEEeecCCCCeEEEEecCCC
Q 014104 179 R-NGLRSV-FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---------RKCSQIIRMHCAPVTSLSLSEDQ 245 (430)
Q Consensus 179 ~-~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~~~~~ 245 (430)
+ ++++.. +.. +.. .+..+++.+ +..+++++.|+.|++||+++ ++++..+. |...|.+++|+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSEEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCceEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 877643 233 333 334456666 67799999999999999988 77777776 88999999999776
Q ss_pred EEEEEeCCCeEEEEeCCC-Cce-eEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCC------ceeeeeecC
Q 014104 246 LIISGSSLGSIAISGLSS-DQR-VATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTM------KSLWETRIS 316 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~ 316 (430)
+++++.|+.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|+++.. +....+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 553 2333334778999999999 9999999999999999999887 777788888
Q ss_pred CC---------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 317 PN---------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 317 ~~---------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.. .|.+++ |+|++++|++++.||.|++||+.+++.+..+..|
T Consensus 242 ~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------- 292 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---------------------------- 292 (342)
T ss_dssp CCCTTCCSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----------------------------
T ss_pred cccccccccceeEEEEE-EcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc----------------------------
Confidence 65 999999 9999999999999999999999999888776543
Q ss_pred cccCCCCCCCCeeEEEEcCeEEEEeeCCCe-EEEEE
Q 014104 388 IDRIPKTIRPPITCLAVGMKKVVTTHNSKY-IRLWK 422 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~-v~vw~ 422 (430)
|...|++++.++++|++|+.||. .+.|.
T Consensus 293 -------h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 293 -------NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -------SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred -------cCCCceEecCCCCeEEEEecCCccccccc
Confidence 25588888877999999999999 55554
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.3e-35 Score=269.01 Aligned_cols=276 Identities=11% Similarity=0.125 Sum_probs=210.1
Q ss_pred cceeEEEe-cCC-eEEEEeCCC-------eEEEEecCCCee--------EEeeec-CCceeEEEEecCCCEEE-EE----
Q 014104 113 VGVDQCRM-KRG-LILTGVGDK-------VMRLWSLEGYKC--------VEEYSL-PNAASLVDFDFDESKIV-GL---- 169 (430)
Q Consensus 113 ~~v~~~~~-~~~-~l~s~~~dg-------~i~iwd~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~l~-~~---- 169 (430)
-||++++| +++ +|++|+.|. .|++|++..+.. ...+.. .+...+++++++++.++ +.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 48999999 677 888887543 599999875432 122222 22334456677777776 32
Q ss_pred -------eCCeEEEEEcCCCcccc--------c--CCCCceeeeeEEEEcCCceEEE--ecCCeEEEEECCCCeeeEEee
Q 014104 170 -------IGTRICIWRRNGLRSVF--------P--SREGTFMKGLCMRYFDPEAVVG--CEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 170 -------~~~~i~vwd~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~ 230 (430)
.++.+++|++++..... . .........+++++++..++++ +.|++|++||+++++++..+.
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~ 174 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE 174 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC
Confidence 46789999987654211 0 1112234567888888886544 478999999999999998886
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE-EecCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEeC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGIKTLCYNPCSRLVFAGTTAG----YASCWDL 304 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~ 304 (430)
|.+.|.+++|+|+ .++++++. +.+.+|+..+++.+.. ....|...|.+++|+|+++++++++.|+ .+++|++
T Consensus 175 -~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 175 -TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp -CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred -CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 7789999999987 77877775 5566677677766543 3333677899999999999999998887 6888998
Q ss_pred CCCce----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 305 RTMKS----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 305 ~~~~~----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
..... ...+.+|...|++++ |+|+|++|++|+.|++|+|||+++++++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~V~~~~-~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----------------------- 308 (365)
T 4h5i_A 253 KSGNTSVLRSKQVTNRFKGITSMD-VDMKGELAVLASNDNSIALVKLKDLSMSKIFK----------------------- 308 (365)
T ss_dssp ETTEEEEEEEEEEESSCSCEEEEE-ECTTSCEEEEEETTSCEEEEETTTTEEEEEET-----------------------
T ss_pred ccceecceeeeeecCCCCCeEeEE-ECCCCCceEEEcCCCEEEEEECCCCcEEEEec-----------------------
Confidence 76543 345778889999999 99999999999999999999999999887763
Q ss_pred cccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 381 RLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+|...|++|+| ||++|||||.|++||||++..+
T Consensus 309 ------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 309 ------------QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 356779999999 6899999999999999999654
No 54
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=298.09 Aligned_cols=316 Identities=9% Similarity=0.049 Sum_probs=231.5
Q ss_pred eccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-
Q 014104 109 KAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV- 185 (430)
Q Consensus 109 ~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~- 185 (430)
..|..+|.+++|+.+ +|++++.|++|++||+.+++.+..+..+..+..++|+|++++++ ++.||.|++||+++++..
T Consensus 55 ~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 55 LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 458889999999546 89999999999999999999999998777888999999999999 889999999999987632
Q ss_pred c---------cCCCCceeeeeEEEEcC---CceEEEecCCeEEEEECCCCeeeEEeecC------------------CCC
Q 014104 186 F---------PSREGTFMKGLCMRYFD---PEAVVGCEDGTARVFDMYSRKCSQIIRMH------------------CAP 235 (430)
Q Consensus 186 ~---------~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~ 235 (430)
+ ....++...+.++.+.. ..+++|+.||.| +||+++++++..+..| ...
T Consensus 135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 0 11223333334444433 349999999999 9999999988888765 478
Q ss_pred eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE--Ee---cC------------CCCCeEEEEEec----CC-CEEEE
Q 014104 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT--LR---ST------------DCTGIKTLCYNP----CS-RLVFA 292 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~ 292 (430)
|++++|+|+ .+|++|+.||+|++||+++++.+.. +. .+ +...|.+++|++ ++ .+|++
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 999999986 8999999999999999999887654 21 11 234688888854 32 34555
Q ss_pred EeCC----------------------------------------------------------------------------
Q 014104 293 GTTA---------------------------------------------------------------------------- 296 (430)
Q Consensus 293 ~~~d---------------------------------------------------------------------------- 296 (430)
|+.+
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence 5333
Q ss_pred CeEEEEeCCCCceeee-----------------------------------------eecCCCceEEEEEeeCCCCeEEE
Q 014104 297 GYASCWDLRTMKSLWE-----------------------------------------TRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
|.|++||+.++..... +.+|...+.+++ |+|++++|++
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~-~spdg~~laS 452 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL-PAEYGTAFIT 452 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC-CCSEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc-ccccCcEEEE
Confidence 3445555443322111 122223333444 6789999999
Q ss_pred EcCCCeEEEEEcCCCce---------------------EEEEEeccCcceeeeccCCceEEEeecccccC----------
Q 014104 336 GGIDGVLRVLDQNTGEV---------------------LSRCVMDIGSASSSSNKVSGVIERNEGRRLSA---------- 384 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~---------- 384 (430)
|+.|++|++||+.++.. +..+...+++..+++++.||++++|+......
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 99999999999987632 34444555566788888899998887643210
Q ss_pred C-------------------------------cccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 385 G-------------------------------CCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 385 ~-------------------------------~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. ........+|.+.|++++| || +||+|+.|++|+|||+++++
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 0 0011233569999999999 58 99999999999999987653
No 55
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.3e-35 Score=273.16 Aligned_cols=272 Identities=13% Similarity=0.176 Sum_probs=225.9
Q ss_pred ceeEEEecC-CeEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 114 GVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 114 ~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
.++.|+|+. +.|++|. |++|+|||..+++.+..+..+ ..+.+++|+|++++|+ ++.|+.|++||+++++.+..
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~- 184 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN- 184 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-
Confidence 356788854 4777664 999999999999988877643 3578899999999999 89999999999999875432
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
..++...+.++.+++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|+ .++++++.|+.+++||..+++.
T Consensus 185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 23344456778888888999999999999998764 456788999999999999975 8999999999999999987653
Q ss_pred ----eEEEecCCCCCeEEEEEecCCC-EEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--
Q 014104 267 ----VATLRSTDCTGIKTLCYNPCSR-LVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG-- 337 (430)
Q Consensus 267 ----~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-- 337 (430)
+..... |...|.+++|+|++. .+++ |+.|++|++||+.+++++..+..| ..+.++. ++|+++.+++++
T Consensus 265 ~~~~~~~~~~-~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~-~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 265 GWVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL-WSPHYKELISGHGF 341 (420)
T ss_dssp CSCCSEEECC-CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE-EETTTTEEEEEECT
T ss_pred cceeeeeecc-cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee-ecCCCCeEEEEEec
Confidence 344544 788999999999765 5554 457999999999999999888766 5678888 889999888765
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D 415 (430)
.|+.|+|||+.+++++.++.+ |...|++++| ||++|+|||.|
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~g------------------------------------H~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKG------------------------------------HTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCEEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEcCCCCEEEEEecC
Confidence 789999999999999998865 5558999998 58899999999
Q ss_pred CeEEEEEecCC
Q 014104 416 KYIRLWKFNYS 426 (430)
Q Consensus 416 g~v~vw~~~~~ 426 (430)
++|+|||+...
T Consensus 386 ~tvriWdv~~~ 396 (420)
T 4gga_A 386 ETLRLWRCFEL 396 (420)
T ss_dssp TEEEEECCSCS
T ss_pred CeEEEEECCCC
Confidence 99999998754
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.5e-35 Score=308.80 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=246.3
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC--CCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD--ESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~-~~~~~~i~vw 177 (430)
.+.++.+|.+.|.+++| +++ +|++|+.||+|++||+.+++.+..+..+ ..+..++|+++ +..++ ++.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 56788999999999999 555 9999999999999999999999999876 55777999995 44666 8889999999
Q ss_pred EcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe--------------------------
Q 014104 178 RRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-------------------------- 229 (430)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------- 229 (430)
|+.+++.. +..+.+. +..+++.+.+..+++++.||.|++||+.+++....+
T Consensus 729 d~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNS-VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807 (1249)
T ss_dssp ETTSSSEEEEECCCSSC-EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred ECCCcchhheecCCCCC-EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence 99988743 3334333 345666777777999999999999998776543332
Q ss_pred -----------------------------ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 230 -----------------------------RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 230 -----------------------------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
.+|...|.+++|+|+ .++++++.||.|++||+.++..+..+.+ |...|.
T Consensus 808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~ 886 (1249)
T 3sfz_A 808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVH 886 (1249)
T ss_dssp TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC-CSSCEE
T ss_pred CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC-CccceE
Confidence 157788999999976 8999999999999999999999998887 888999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCC------------------------------------------------------
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLR------------------------------------------------------ 305 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~------------------------------------------------------ 305 (430)
+++|+|+|++|++++.||.|++||+.
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999888888853
Q ss_pred -------------------------CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 306 -------------------------TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 306 -------------------------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
+++.+..+.+|...|.+++ |+|++++|++++.||.|++||+.+++... +..|.
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~ 1044 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQ 1044 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCS
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCC
Confidence 2233344567888999998 99999999999999999999987765432 11121
Q ss_pred Ccc---------eeeeccCCceEEEeecc---------------------------------------cccCCcccccCC
Q 014104 361 GSA---------SSSSNKVSGVIERNEGR---------------------------------------RLSAGCCIDRIP 392 (430)
Q Consensus 361 ~~~---------~~~~~s~d~~v~~~~~~---------------------------------------~~~~~~~~~~~~ 392 (430)
..+ .+++++.|+.+.+|+.. .+.....+ ...
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l 1123 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HEL 1123 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCC
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eee
Confidence 111 23334444444433321 11111112 223
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|...|++++| ++++|++|+.||.|++||+.+++.
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 578899999999 688999999999999999998764
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-35 Score=271.18 Aligned_cols=234 Identities=18% Similarity=0.208 Sum_probs=199.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.|.+++| +++ +|++|+.|++|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||+.+++......
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 4899999 566 9999999999999999999999988876 4577899999999999 8899999999999887543322
Q ss_pred CCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe-------ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 190 EGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII-------RMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 190 ~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.......+++.+ .+..+++|+.||.|++||+++++.+..+ .+|...|.+++|+|+ .++++|+.|+.|++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 223334455555 4556999999999999999999887766 578999999999976 8999999999999999
Q ss_pred CCCC------------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 261 LSSD------------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 261 ~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
+++. .+...+.+ |...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+|.+.|.+++ +++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~-~~~ 362 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA-VAN 362 (393)
T ss_dssp C---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECS
T ss_pred CCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE-ecC
Confidence 9763 34455665 788999999999999999999999999999999999999999999999998 665
Q ss_pred ------CCCeEEEEcCCCeEEEEEcCC
Q 014104 329 ------DTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 329 ------~~~~l~s~~~dg~i~vwd~~~ 349 (430)
++.+|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999864
No 58
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-35 Score=271.34 Aligned_cols=242 Identities=13% Similarity=0.112 Sum_probs=192.8
Q ss_pred EEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEee----ec-CCceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 107 QWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEY----SL-PNAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...+|.+.|.+++| +++.+++++.||+|++||+.+++..... .. ...+..++|+|++++|+ ++.|+.|++||+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34578899999999 5668888999999999999887654322 23 35678899999999999 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSS 252 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~ 252 (430)
++++.+ +..+... +..+++.+.++ .+++++.||.|++||+++++++..+. .|...+.+++|+|+ .++++|+.
T Consensus 169 ~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 169 SQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 988754 3333333 23344444554 48999999999999999988776554 46678999999975 68999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~ 330 (430)
|+.|++||+++++.+..+.+ |...|++++|+|++ ++|++|+.|++|++||+++++.+.. .+|.+.|++++ |+| ++
T Consensus 248 d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~va-fsP~d~ 324 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVA-WSPLDH 324 (357)
T ss_dssp SSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEE-ECSSST
T ss_pred ccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEE-EeCCCC
Confidence 99999999999999999987 88899999999987 5789999999999999999887765 47999999999 998 78
Q ss_pred CeEEEEcCCCeEEEEEcCCCce
Q 014104 331 STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.+|++++.||+|++||+.+...
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp TEEEEEETTSCEEEEECC----
T ss_pred CEEEEEcCCCeEEEEECCCCCc
Confidence 9999999999999999976433
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.2e-35 Score=287.60 Aligned_cols=306 Identities=14% Similarity=0.139 Sum_probs=246.8
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----eeEEeeecC-Cc-eeEEEEec--CCCEEE-EEeCCeEEEEE
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLP-NA-ASLVDFDF--DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~-~~~~~~~~--~~~~l~-~~~~~~i~vwd 178 (430)
.|.+.|.+++| +++ +|++++ ++.|++||+.++ +....+.+| .. +..++|+| ++++|+ ++.|+.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 68899999999 566 888887 889999999998 888888876 45 78899999 999999 88899999999
Q ss_pred cCCC--------cc--cccCCCCceeeeeEEEEcCCceEEEecC----CeEEEEECCCCeeeEEeecCCCCeEEEEecCC
Q 014104 179 RNGL--------RS--VFPSREGTFMKGLCMRYFDPEAVVGCED----GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244 (430)
Q Consensus 179 ~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~ 244 (430)
+.++ .. .+..+.. ....+++.+++..+++++.+ +.|.+|| +++.+..+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred CCCCcccccccccccchhhcccc-cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 9754 21 2222333 34456666777779999887 7899998 67788899999999999999986
Q ss_pred -C-EEEEEeCCCeEEEEeCCCCceeEEEecCCCC---CeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeee-e---
Q 014104 245 -Q-LIISGSSLGSIAISGLSSDQRVATLRSTDCT---GIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWET-R--- 314 (430)
Q Consensus 245 -~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--- 314 (430)
. .+++++.|+.|++||+.+++.+..+.. |.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 3 899999999999999999999999987 777 8999999999 999999999999999999999999888 6
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc-------------CcceeeeccCCceEEEeeccc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI-------------GSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~s~d~~v~~~~~~~ 381 (430)
.|...|.++. |+ ++.+|++++.||.|++||+.+++.+..+..+. ....+++++.|+.+.+|+...
T Consensus 251 ~~~~~v~~~~-~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 251 PVQGGIFALS-WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCCSCEEEEE-ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred ccCCceEEEE-Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 8999999999 88 99999999999999999999999998888763 223677788888888776543
Q ss_pred ccCCcccccCC--------------------------------CCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIP--------------------------------KTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~--------------------------------~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.. .+..+. ..|...|+++++. ++.+++++.|+.|++|++..
T Consensus 329 ~~---~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 329 DE---VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EE---EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred Cc---EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEccc
Confidence 11 111110 3455556666663 55666666666666666654
No 60
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-34 Score=262.74 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=197.2
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.+...+.+|.+.|.+++| +++ ++++|+.|++|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 456789999999999999 455 9999999999999999999999999876 5677899999999999 88899999999
Q ss_pred cCCCccc-ccCCCCce--eeeeEEEEcC----------CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-
Q 014104 179 RNGLRSV-FPSREGTF--MKGLCMRYFD----------PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED- 244 (430)
Q Consensus 179 ~~~~~~~-~~~~~~~~--~~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~- 244 (430)
+...... ......+. ...+.+.+.+ +.+++++.||.|++||. +.+....+.+|...|.+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCC
Confidence 9854322 11111222 2334444443 56999999999999994 66777888999999999999986
Q ss_pred CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eee-------
Q 014104 245 QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETR------- 314 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~------- 314 (430)
++|++|+.|+.|++||+. .......+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+.
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 899999999999999994 444455554 45579999999999988765 56779999998766543 333
Q ss_pred ----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 315 ----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 315 ----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+|...|.+++ |+|+|++|++|+.||.|++||++++
T Consensus 303 ~~~~~~~~~v~~~~-~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLA-WNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEE-ECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEE-ECCCCCeEEEecCCceEEEEEEEcc
Confidence 6778899999 9999999999999999999998754
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-35 Score=266.90 Aligned_cols=243 Identities=12% Similarity=0.134 Sum_probs=189.6
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+.+|.+.|++++| +++ +|++|+.|++|++||+.+++ .+..+.+| ..+..++|+++.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------------------ 69 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------------------ 69 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------------------
Confidence 56799999999999 555 99999999999999998764 35566655 334445554310
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC---CEEEEEeCCCeE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED---QLIISGSSLGSI 256 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i 256 (430)
.+..|++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ .++++|+.|++|
T Consensus 70 --------------------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 70 --------------------YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp --------------------GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred --------------------CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 12338899999999999998773 56678889999999999974 589999999999
Q ss_pred EEEeCCCCce---eEEEecCCCCCeEEEEEecC-----------------CCEEEEEeCCCeEEEEeCCCC---ceeeee
Q 014104 257 AISGLSSDQR---VATLRSTDCTGIKTLCYNPC-----------------SRLVFAGTTAGYASCWDLRTM---KSLWET 313 (430)
Q Consensus 257 ~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~ 313 (430)
++||++++.. ...+.+ |...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+
T Consensus 130 ~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEECSSSCEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEecCCCCCcceeeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 9999987632 223333 7788999999997 478999999999999999754 467788
Q ss_pred ecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCc----eEEEEEeccCcceeeeccCCceEEEeecccccCC
Q 014104 314 RISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGE----VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG 385 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~ 385 (430)
.+|.+.|.+++ |+|++ .+|++++.||+|++||+.+.. ....+.
T Consensus 209 ~~h~~~V~~v~-~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---------------------------- 259 (316)
T 3bg1_A 209 EAHSDWVRDVA-WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH---------------------------- 259 (316)
T ss_dssp BCCSSCEEEEE-CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE----------------------------
T ss_pred ccCCCceEEEE-ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh----------------------------
Confidence 99999999999 99986 789999999999999987631 111122
Q ss_pred cccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 386 CCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 386 ~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...|++++| ++++|++|+.||+|++|+...
T Consensus 260 --------~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 260 --------KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp --------ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred --------cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 24568999999 588999999999999999863
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-34 Score=261.70 Aligned_cols=249 Identities=15% Similarity=0.186 Sum_probs=210.5
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+...++.+| ..+.+++|+|+++.|+ ++.|+.|++||..+++.. +..+. ..+..+++.+.+..+++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 445567766 5678899999999999 899999999998876632 22222 234456777777789999999999999
Q ss_pred ECCCC------eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCE
Q 014104 219 DMYSR------KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRL 289 (430)
Q Consensus 219 d~~~~------~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 289 (430)
++... .....+.+|...|.+++|+|+ ..+++++.|++|++||+++++.+..+.+ |...|.+++|+| ++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCE
Confidence 98643 345677889999999999976 7999999999999999999999999987 888999999987 4689
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeecc
Q 014104 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNK 369 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s 369 (430)
|++|+.||.|++||+++++++..+.+|...|.+++ |+|++.+|++|+.|++|++||+++++.+..+..+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------- 281 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR-YYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------- 281 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC----------
Confidence 99999999999999999999999999999999999 9999999999999999999999988766555321
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+...+++++| ++++|++|+.|+.|++||+.+++.
T Consensus 282 ------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 282 ------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp ------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred ------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 12346788888 589999999999999999987753
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=255.81 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=222.2
Q ss_pred eeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 115 VDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 115 v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.++|+|+ +++|++| .|++|+|||+.++++++.+..+ ..+..++|++++++++ ++.|+.|++||+++++.+.. .
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~-~ 105 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-M 105 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-E
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE-e
Confidence 5788995 4566665 5999999999999999888743 3477899999999999 88999999999999875432 2
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR- 266 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~- 266 (430)
.++.....++...+..+++++.++.+++|+..+. ..+..+.+|...+..+.+.++ .++++++.|+.|++||+++++.
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 2333445777888888999999999999998776 456778899999999999965 8999999999999999987653
Q ss_pred ---eEEEecCCCCCeEEEEEecCCCEE---EEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--C
Q 014104 267 ---VATLRSTDCTGIKTLCYNPCSRLV---FAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG--I 338 (430)
Q Consensus 267 ---~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~ 338 (430)
...... +...|.++.++|++..+ ++++.++.|++||.+........ .+...+..+. ++|++..+++++ .
T Consensus 186 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 186 WVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL-WSPHYKELISGHGFA 262 (318)
T ss_dssp SCCSEEECC-CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE-EETTTTEEEEEECTT
T ss_pred ccceeeecc-cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee-ecccccceEEEEEcC
Confidence 233333 67789999999977633 36678899999999988776554 4557788888 889998887654 7
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|+.|++||+.+++++.++.+ |.+.|++++| ++++|+|||.||
T Consensus 263 d~~i~iwd~~~~~~~~~l~g------------------------------------H~~~V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELKG------------------------------------HTSRVLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp TCCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSCEEEEETTT
T ss_pred CCEEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEcCCCCEEEEEecCC
Confidence 99999999999999998865 5558999999 588999999999
Q ss_pred eEEEEEecCCC
Q 014104 417 YIRLWKFNYSD 427 (430)
Q Consensus 417 ~v~vw~~~~~~ 427 (430)
+|+|||+...+
T Consensus 307 ~v~iWd~~~~d 317 (318)
T 4ggc_A 307 TLRLWRCFELD 317 (318)
T ss_dssp EEEEECCSCCC
T ss_pred eEEEEECCCCC
Confidence 99999997654
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.4e-34 Score=259.42 Aligned_cols=278 Identities=15% Similarity=0.165 Sum_probs=229.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
|.++|.++++ ++| +++++..++.+..|+.... +.+..+.+...+..++|+++++.++++.++.|++||+.++.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 5678999999 566 7777777777777765543 444455555778889999999999955599999999987652211
Q ss_pred C------CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 188 S------REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 188 ~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
. ........+++.+.+..+++++.||.|++||+.+++ ....+..|...|.+++|+|+ +++++++.||.|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 1 222334455666666779999999999999999887 66778889999999999976 79999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++ ++|+++++++++.
T Consensus 168 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~-~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 168 WDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG-YCPTGEWLAVGME 244 (337)
T ss_dssp EETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE-ECTTSSEEEEEET
T ss_pred EeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE-ECCCCCEEEEEcC
Confidence 99999999999887 88899999999999999999999999999999998887765 668899998 9999999999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|+.|++||+.+++.. .+. .|...|++++| ++++|++++.||
T Consensus 245 ~~~i~~~~~~~~~~~-~~~------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKY-QLH------------------------------------LHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TSCEEEEETTSSCEE-EEC------------------------------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEECCCCCeE-EEc------------------------------------CCccceeEEEECCCCCEEEEecCCC
Confidence 999999999977643 222 35568999999 588999999999
Q ss_pred eEEEEEecCCCc
Q 014104 417 YIRLWKFNYSDK 428 (430)
Q Consensus 417 ~v~vw~~~~~~~ 428 (430)
.|++|++.+++.
T Consensus 288 ~i~~~~~~~~~~ 299 (337)
T 1gxr_A 288 LLNAWRTPYGAS 299 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCeE
Confidence 999999988764
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.5e-34 Score=269.34 Aligned_cols=277 Identities=19% Similarity=0.310 Sum_probs=235.3
Q ss_pred CCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEE
Q 014104 141 GYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD 219 (430)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd 219 (430)
..+....+.+|......+++++++.++ ++.||.|++||+.+++..... .++...+.++.+.+..+++|+.||+|++||
T Consensus 107 ~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence 334556677776655557888899998 889999999999988754222 233344567777778899999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
+.+++.+..+.+|...|.++.++ ++.+++|+.||.|++||+.+++.+..+.+ |...|.++++ +++++++|+.||.|
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCVQY--DGRRVVSGAYDFMV 261 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEEC-CSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred CCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcC-CcccEEEEEE--CCCEEEEEcCCCEE
Confidence 99999999999999999999996 45799999999999999999999999987 8889999999 78899999999999
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc--------eeeeccCC
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA--------SSSSNKVS 371 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~s~d 371 (430)
++||+++++.+..+.+|...|.++. + ++.++++++.||.|++||+.+++++..+..|...+ .+++++.|
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~-~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQ-F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEE-E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred EEEECCCCcEeEEecCCCCceEEEE-E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence 9999999999999999999999998 6 78999999999999999999999999888776543 67888999
Q ss_pred ceEEEeecccccCCcccccCC--CCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 372 GVIERNEGRRLSAGCCIDRIP--KTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|.+.+|+... +..+..+. ..|...|+++++++++|++|+.||.|++||+.+++.
T Consensus 339 g~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 STVKIWDIKT---GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SCEEEEETTT---CCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CeEEEEECCC---CcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 9998887643 33333332 358899999999999999999999999999998764
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.4e-35 Score=272.74 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=221.4
Q ss_pred eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC
Q 014104 155 SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 155 ~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (430)
..++|+|++++++ ++.|+.+++||+.+++...............+.+.+..+++|+.||.|++||+.+++....+.+|.
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 139 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV 139 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc
Confidence 4589999999998 888999999999987755444444444444555667779999999999999999999988888999
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+.|.+++|+|+ +++++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 99999999976 7999999999999999999999999987 888999999999999999999999999999999998888
Q ss_pred eecC---CCceEEEEE--------------------eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-ccC-------
Q 014104 313 TRIS---PNVVYSLQH--------------------LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-DIG------- 361 (430)
Q Consensus 313 ~~~~---~~~v~~l~~--------------------~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~------- 361 (430)
+..| ...+.++.+ |+|++++|++|+.||.|++||+.+++.+..+.. |..
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence 7753 344444431 678999999999999999999998887666643 222
Q ss_pred ---cc-eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCC
Q 014104 362 ---SA-SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 362 ---~~-~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.. .+++++.||.+.+|+..... ..+..+..+|...|+++.+ ++++|++++.||.|++|++..+
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 22 67777788888877665432 1234455567889999988 6889999999999999999874
No 67
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-35 Score=272.59 Aligned_cols=263 Identities=16% Similarity=0.223 Sum_probs=218.9
Q ss_pred EEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEE
Q 014104 134 MRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 209 (430)
+..|+.....+..++.+| ..+..++|+|++++|+ ++.|++|++||+.+++.. +..+... +..+++.+++..+++|
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEEC
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEe
Confidence 445666777778888887 5678899999999999 889999999999887643 3344333 3456777788889999
Q ss_pred ecCCeEEEEECCCCe-------eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe----cCCCC
Q 014104 210 CEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR----STDCT 276 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~ 276 (430)
+.|+.+++||+.+.. ....+.+|.+.|.++.|.|+ ..+++|+.|++|++||+++++.+..+. ..|..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 999999999986532 34567899999999999974 579999999999999999999988773 23778
Q ss_pred CeEEEEEec-CCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 277 GIKTLCYNP-CSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 277 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
.|.+++|+| ++++|++|+.|++|++||++ .++.+..+.+|.+.|.+++ |+|++++|++|+.||+|++||+++++.+.
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK-FFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE-ECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE-EecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 999999987 78999999999999999998 4577888999999999999 99999999999999999999999999888
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+..+... ...+...|++++| +|++|++|+.||.|++||+..++
T Consensus 286 ~~~~~~~~-----------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 286 VYNREPDR-----------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EECCCCSS-----------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred Eecccccc-----------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 87654330 0123356889998 68999999999999999987665
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=269.18 Aligned_cols=305 Identities=10% Similarity=0.128 Sum_probs=222.7
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe-----------eEEeeecC-------------CceeEEEEecCC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----------CVEEYSLP-------------NAASLVDFDFDE 163 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~~ 163 (430)
.|.+.|++++| +++ +|++|+.||.|+|||+.+++ ....+.+| ..+..++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 36899999999 555 99999999999999999876 46777776 457789999998
Q ss_pred --CEEE-EEeCCeEEEEEcCCCccc------------------------------------------ccCCCCceeeeeE
Q 014104 164 --SKIV-GLIGTRICIWRRNGLRSV------------------------------------------FPSREGTFMKGLC 198 (430)
Q Consensus 164 --~~l~-~~~~~~i~vwd~~~~~~~------------------------------------------~~~~~~~~~~~~~ 198 (430)
..++ ++.|+.|++||+.++... ...+.. .+..++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~ 184 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-HINSIS 184 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS-CCCEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc-ceEEEE
Confidence 6677 899999999998764321 112222 233455
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-CeeeE-------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce--
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCSQ-------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-- 266 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-- 266 (430)
+.+.+..+++| .||.|++||+++ ++.+. .+.+|...|.+++|+|+ .++++|+.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 55666668888 899999999984 44444 25689999999999975 6999999999999999999887
Q ss_pred --eEEEecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCc------------
Q 014104 267 --VATLRSTDCT------------GIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNV------------ 319 (430)
Q Consensus 267 --~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~------------ 319 (430)
+..+.. +.. .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...
T Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 264 RHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp TTCEEECC-C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred ceeeEecc-CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 677776 544 8999999999999999999 9999999997 8888888888532
Q ss_pred ---eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 320 ---VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 320 ---v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
+..++ |+|++++|++|+.||.|++||+.+++.+ .+..+..............+.... ... ..........+.
T Consensus 342 i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 416 (447)
T 3dw8_B 342 IFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASG-KRK--KDEISVDSLDFN 416 (447)
T ss_dssp GGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSS-CCC--TTCEEGGGCCTT
T ss_pred cccceEEE-ECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccC-Ccc--cccccccccccC
Confidence 23377 9999999999999999999999998876 455444322111111111110000 000 000111112345
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|.+++| ++++|++|+.++ +.+|.-+
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 68999999 588999998876 7777643
No 69
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-33 Score=253.81 Aligned_cols=249 Identities=17% Similarity=0.235 Sum_probs=208.7
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
....++.+| ..+..++|+|++++|+ ++.|+.|++|+..+++.. +..+... +..+++.+++..+++++.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc-eEEEEEcCCCCEEEEECCCCEEEEE
Confidence 445566665 5678899999999999 888999999999877643 3333333 3446666677779999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
|+++++++..+.+|...|.+++|+|+ +++++|+.|+.|++||+++++.+..+.. |..+|.+++|+|++++|++++.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999999976 8999999999999999999999999887 788999999999999999999999
Q ss_pred eEEEEeCCCCceeeeee-cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 298 YASCWDLRTMKSLWETR-ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
.|++||+++++.+..+. .+...+..++ |+|++++|++++.||.|++||+.+++++..+..|....
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------- 237 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK------------- 237 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEE-ECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS-------------
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEE-ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce-------------
Confidence 99999999988877654 4556788888 99999999999999999999999999888887654411
Q ss_pred eecccccCCcccccCCCCCCCCeeE-EEE-cCeEEEEeeCCCeEEEEEecCCC
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITC-LAV-GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~-v~~-~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..+.. ... ++.+|++|+.||.|++||+.+++
T Consensus 238 --------------------~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 238 --------------------YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp --------------------SCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred --------------------EEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 11111 222 57889999999999999998775
No 70
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=260.32 Aligned_cols=262 Identities=13% Similarity=0.124 Sum_probs=205.3
Q ss_pred CeeEEeeecCC--ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----c-cCCCCceeeeeEEEEcCCceEEEecCC
Q 014104 142 YKCVEEYSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----F-PSREGTFMKGLCMRYFDPEAVVGCEDG 213 (430)
Q Consensus 142 ~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~~dg 213 (430)
.+++.++.+|. .+..++|+|++++|+ ++.|+.|++||++++... . ..|.. .+..+++.+++..|++|+.|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECCC
Confidence 35667777663 567899999999999 888999999999887522 1 22333 234566666777799999999
Q ss_pred eEEEEECCCC--eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCC
Q 014104 214 TARVFDMYSR--KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCS 287 (430)
Q Consensus 214 ~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 287 (430)
+|++||+.++ +++..+.+|...|.+++|+|+ ++|++|+.|++|++||++++. .+..+.. |...|.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCC
Confidence 9999998776 467888999999999999986 899999999999999998764 3455655 88899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCccee
Q 014104 288 RLVFAGTTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASS 365 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 365 (430)
++|++|+.|+.|++||.++++ +...+.+|...|.+++ |+|++++|++++.|++|++||....... .. +
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~-~sp~g~~l~s~s~D~~v~iW~~~~~~~~-------~~--~ 232 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSGQRLASCSDDRTVRIWRQYLPGNE-------QG--V 232 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEEEECTTCT-------TC--C
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE-ECCCCCEEEEEeCCCeEEEeccccCCCC-------cc--c
Confidence 999999999999999998775 4567889999999999 9999999999999999999996432110 00 0
Q ss_pred eeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 366 SSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 366 ~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.....+... .++..+...|...|++++| ++..|++++.|+.|++|+...+
T Consensus 233 ~~~~~~~~~-----------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 233 ACSGSDPSW-----------KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CCC---CEE-----------EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred eeeccCCcc-----------ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 000000000 1122233458889999999 5889999999999999998764
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-34 Score=263.73 Aligned_cols=252 Identities=14% Similarity=0.171 Sum_probs=203.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
.+..+.+|.+.|++++| +++ +|++|+.||.|++||+. +++.+..+..| ..+..++|+++.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------- 67 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--------------- 67 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---------------
Confidence 45678999999999999 555 99999999999999998 55666666655 344556665431
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC---CEEEEEeCC
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED---QLIISGSSL 253 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~---~~l~~~~~d 253 (430)
.+..+++++.||.|++||+.+++ .+..+..|...|.+++|+|+ .++++++.|
T Consensus 68 -----------------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 68 -----------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp -----------------------GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred -----------------------CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 02337889999999999998886 77788889999999999974 699999999
Q ss_pred CeEEEEeCCCCce--eEEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEeCCCCc----eeeeee
Q 014104 254 GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNP-------------CSRLVFAGTTAGYASCWDLRTMK----SLWETR 314 (430)
Q Consensus 254 g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 314 (430)
+.|++||++++.. ...+.. |...|.+++|+| ++.+|++++.||.|++||+++++ ....+.
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CcEEEEecCCCCceeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 9999999998743 344444 788999999999 69999999999999999998764 445778
Q ss_pred cCCCceEEEEEeeCC---CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 315 ISPNVVYSLQHLQND---TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
+|...|.+++ |+|+ +.+|++++.||.|++||+.++..........
T Consensus 204 ~h~~~v~~~~-~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------- 251 (379)
T 3jrp_A 204 GHSDWVRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK------------------------------- 251 (379)
T ss_dssp CCSSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS-------------------------------
T ss_pred cccCcEeEEE-ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec-------------------------------
Confidence 8999999999 9999 8999999999999999998765322111100
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...|...|++++| ++++|++++.||.|++|++..+
T Consensus 252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 1346678999999 6889999999999999999843
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.7e-34 Score=258.70 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=201.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----eeEEeeecC-CceeEEEEec--CCCEEEEEeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLP-NAASLVDFDF--DESKIVGLIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~~~i~vw 177 (430)
.+.+|.+.|++++| +++ +|++|+.||.|++||+.++ +....+..+ ..+..++|++ +++.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~------------ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI------------ 73 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE------------
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE------------
Confidence 57899999999999 555 9999999999999999876 355555554 4455566666 3444
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---------eeeEEeecCCCCeEEEEecC---CC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---------KCSQIIRMHCAPVTSLSLSE---DQ 245 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~~~---~~ 245 (430)
+++++.||.|++||++++ +.+..+..|.+.|.+++|+| +.
T Consensus 74 ----------------------------l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 74 ----------------------------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125 (351)
T ss_dssp ----------------------------EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred ----------------------------EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc
Confidence 566666777777776655 55777888999999999997 56
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEe------------cCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCce-
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLR------------STDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMKS- 309 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~- 309 (430)
++++++.||.|++||+++++.+..+. ..+...+.+++|+|+ +..+++++.++.+.+|+...++.
T Consensus 126 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205 (351)
T ss_dssp EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE
T ss_pred EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee
Confidence 89999999999999999887654432 136678999999997 89999999999998888877765
Q ss_pred -eeeeecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceee----------eccCCceE
Q 014104 310 -LWETRISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSS----------SNKVSGVI 374 (430)
Q Consensus 310 -~~~~~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~s~d~~v 374 (430)
+..+.+|...|.+++ |+|++ ++|++++.||.|++||+.++................ .+..++..
T Consensus 206 ~~~~~~~h~~~i~~~~-~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSIS-WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp EEEECCCCCSCEEEEE-ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred eeeecCCCCcceeEEE-ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence 677888999999999 99998 899999999999999998765544333222221111 11111111
Q ss_pred -EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 375 -ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.....+...... ......+|...|++++| ++++|++|+.||.|++|++.++++
T Consensus 285 ~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 285 EEKAELQSNLQVE-LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ------CCSEEEE-EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ceeeeeccccccc-EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 011111111111 12223578999999999 588999999999999999998764
No 73
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=255.22 Aligned_cols=252 Identities=13% Similarity=0.151 Sum_probs=194.6
Q ss_pred CCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--cc--c-cC-CCCceeeeeEEEEcCCceEEEecC
Q 014104 141 GYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SV--F-PS-REGTFMKGLCMRYFDPEAVVGCED 212 (430)
Q Consensus 141 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~~--~-~~-~~~~~~~~~~~~~~~~~l~~~~~d 212 (430)
+.+++..+.+| ..+..++|+++ .|+ ++.|+.|++||+.++. .. + .. |.. .+..+++.+.+..+++|+.|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK-AIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS-CEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC-CEEEEEECCCCCEEEEEeCC
Confidence 44667777776 45667888876 777 8889999999998753 11 2 11 222 34456666677779999999
Q ss_pred CeEEEEECCC-------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC----ceeEEEecCCCCCeEE
Q 014104 213 GTARVFDMYS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGIKT 280 (430)
Q Consensus 213 g~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~ 280 (430)
++|++||+.. .+++..+.+|...|.+++|+|+ ++|++|+.|++|++||++.. +++..+.+ |...|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEE
Confidence 9999999853 3567788899999999999986 89999999999999999532 45667776 8889999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCCceEEEEEeeCC--CCeEEEEcCCCeEEEEEcCCCceE--E
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPNVVYSLQHLQND--TSTLVVGGIDGVLRVLDQNTGEVL--S 354 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~--~ 354 (430)
++|+|++++|++|+.|++|++||..++ +++..+.+|.+.|.+++ |+|+ +.+|++|+.|++|++||+.++... .
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE-ecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999999999999999999999998766 67788999999999999 9998 678999999999999998643210 0
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+ .....+...|...|++++|+ +.+|++++.||+|++|+..++
T Consensus 238 ~~-----------------------------~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 238 EW-----------------------------VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EE-----------------------------EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred ee-----------------------------EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 00 00112223478899999994 668999999999999998765
No 74
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.5e-33 Score=256.42 Aligned_cols=300 Identities=15% Similarity=0.070 Sum_probs=212.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~ 179 (430)
++.++.+|.+.|.+++| +++ +|++|+.| .+++||+.+++.......+ .+..+++.++++.++ ++.++.|++||.
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 44567899999999999 566 78877766 4789999988777665543 577789999988875 566789999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCCCEEEE--EeCCCeE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSEDQLIIS--GSSLGSI 256 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~--~~~dg~i 256 (430)
.+++.+....... .+.++......++++ .++.|++||+.++ +.+..+.. +...+++++ ..++. |+.||.|
T Consensus 89 ~~~~~~~~~~~~~--~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v 161 (355)
T 3vu4_A 89 VKKQDVSRIKVDA--PVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQI 161 (355)
T ss_dssp TTTEEEEEEECSS--CEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCE
T ss_pred CCCcEEEEEECCC--ceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEE
Confidence 9887543322222 345555555555554 5789999999988 77766664 444556666 45555 6899999
Q ss_pred EEEeCCCCc----------------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeee-c-CC
Q 014104 257 AISGLSSDQ----------------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETR-I-SP 317 (430)
Q Consensus 257 ~vwd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~-~~ 317 (430)
++||+.+++ .+..+.+ |...|.+++|+|+|++|++|+.|++ |++||+++++++..+. + |.
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 999999865 2667776 8899999999999999999999998 9999999999999998 5 89
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
..|.+++ |+|++++|++++.|++|++||+..+........... . .....+ ..+ ......++..+..
T Consensus 241 ~~v~~~~-~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~--~-~~~~~~------~~~----~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 241 ADVVDMK-WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW--I-NMKYFQ------SEW----SLCNFKLSVDKHV 306 (355)
T ss_dssp SCEEEEE-ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--E-ECCCCC------CSS----CSEEEECCCCTTC
T ss_pred CcEEEEE-ECCCCCEEEEEECCCEEEEEEccCCCCcccccccce--e-eccccc------ccc----ceeEEEeccCCCC
Confidence 9999999 999999999999999999999986532211110000 0 000000 000 0001112222333
Q ss_pred CeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 398 PITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
....++| ++++|++++.||.+++|++..++
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4566777 68999999999999999987654
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=258.92 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=226.6
Q ss_pred CEeEEEEeccccceeEEEe-cC---C-eEEEEeCCCeEEEEecCC-CeeE-EeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KR---G-LILTGVGDKVMRLWSLEG-YKCV-EEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~---~-~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
...+..+.+|.+.|++++| ++ + +|++|+.||.|++||+.+ ++.+ ..+..| ..+..++|+|++++|+ ++.|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3467788999999999999 44 4 999999999999999987 5554 566654 5678899999999998 88899
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEE--EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCM--RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG 250 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 250 (430)
.|++||+++++.............+++ .+.+..+++++.||.|++||+++++.+..+..+. .+.++.+.++ .++++
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 186 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVA 186 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEE
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEE
Confidence 999999998875433322333344555 3344459999999999999999999998888654 6777777644 77888
Q ss_pred eCCCeEEEEeCCCCceeEE-EecCCCCCeEEEEEecCCCE----EEEEeCCCeEEEEeCCCC---ceeeeeecCCC----
Q 014104 251 SSLGSIAISGLSSDQRVAT-LRSTDCTGIKTLCYNPCSRL----VFAGTTAGYASCWDLRTM---KSLWETRISPN---- 318 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~---- 318 (430)
+.++.+.+||++....... +...+...+.++.+.++... +++++.||.|++||++.. +.+..+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 8899999999987654433 33334457778888776654 999999999999999987 56677777765
Q ss_pred --------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccccc
Q 014104 319 --------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 319 --------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
.|.+++ |+|++++|++++.||.|++||+.+++++..+..
T Consensus 267 ~~~~~~~~~v~~~~-~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------- 313 (368)
T 3mmy_A 267 TSAPQDIYAVNGIA-FHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-------------------------------- 313 (368)
T ss_dssp -CCCEEECCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--------------------------------
T ss_pred ccccccccceEEEE-EecCCCEEEEEccCCeEEEEECCCCcEEEEecC--------------------------------
Confidence 699999 999999999999999999999999988887754
Q ss_pred CCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 391 IPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 391 ~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
|...|++++| ++++|++|+.|+..+.|++.
T Consensus 314 ----~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 ----LDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ----CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ----CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 4458999999 58899999999877666654
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=272.37 Aligned_cols=279 Identities=13% Similarity=0.119 Sum_probs=221.6
Q ss_pred EEecCCCeeEEee-ecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCC---Cc---cccc-CCCCceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEY-SLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNG---LR---SVFP-SREGTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~---~~---~~~~-~~~~~~~~~~~~~~~~~ 204 (430)
.|+ .+++.+..+ .+| ..+..++|+| ++++|+ ++.|+.|++||+.+ +. .... .+.. .+..+++.+.+.
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSS-TVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSS-CEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCC-CEEEEEEeCCCC
Confidence 488 456888888 665 6788899999 999999 88999999999876 32 1122 2222 234455555666
Q ss_pred ceEEEecCCeEEEEECC---CCeeeEEeec------------CCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCCCCce
Q 014104 205 EAVVGCEDGTARVFDMY---SRKCSQIIRM------------HCAPVTSLSLS--ED-QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
.+++++.||.|++||++ +++.+..+.. +...+.++.+. ++ .++++|+.|+.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 79999999999999994 5555444332 44556666633 44 7999999999999999999999
Q ss_pred eEEEecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEE---eeCCCCeEEEEcCCCe
Q 014104 267 VATLRST-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQH---LQNDTSTLVVGGIDGV 341 (430)
Q Consensus 267 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~---~s~~~~~l~s~~~dg~ 341 (430)
+..+... |...|++++|+|++++|++|+.||.|++||+++++++..+. .|...|.++++ ++|++.+|++|+.||.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 9999864 67799999999999999999999999999999999988876 77789999951 4567889999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC--CCCCCeeEEEE-cCeEEEEeeCCCeE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK--TIRPPITCLAV-GMKKVVTTHNSKYI 418 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~-~~~~l~t~~~Dg~v 418 (430)
|++||+.+++++..+..|...+....+++++... ...... .|...|++++| ++++|++|+.||.|
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i 352 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL------------EELNFCGIRSLNALSTISVSNDKILLTDEATSSI 352 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG------------GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceeccccccc------------ccceecccccCCceEEEEECCceEEEecCCCCeE
Confidence 9999999999999999998877777777766431 000112 37889999999 57899999999999
Q ss_pred EEEEecCCCc
Q 014104 419 RLWKFNYSDK 428 (430)
Q Consensus 419 ~vw~~~~~~~ 428 (430)
++||+.+++.
T Consensus 353 ~~wd~~~~~~ 362 (437)
T 3gre_A 353 VMFSLNELSS 362 (437)
T ss_dssp EEEETTCGGG
T ss_pred EEEECCCccc
Confidence 9999988764
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.7e-33 Score=262.55 Aligned_cols=261 Identities=19% Similarity=0.257 Sum_probs=219.5
Q ss_pred EeEEEEeccccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec--CCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF--DESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vw 177 (430)
..+..+.+|.+.|.+++|. ++++++|+.||+|++||+.+++.+..+.++ ..+..+++++ ++..++ ++.|+.|++|
T Consensus 153 ~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 153 KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 4677889999999999995 459999999999999999999999999865 5677788885 667777 8899999999
Q ss_pred EcCCCccc----------------------ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC
Q 014104 178 RRNGLRSV----------------------FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 178 d~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (430)
|+.+.... .....++...+.++.+.+..+++|+.||.|++||+.+++++..+.+|...
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence 99876532 11233444556777888888999999999999999999999999999999
Q ss_pred eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
|.+++|+|+ +.+++|+.||.|++||+++++.+..+.+ |...|.+++|+ +++|++++.||.|++||+++++......
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999976 8999999999999999999999999987 88899999996 5899999999999999999887665553
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE-EEeccCcceeeecc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR-CVMDIGSASSSSNK 369 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s 369 (430)
+...+..++ ++|+++++++|+ ||.|++||+.+++.+.. +..+...+..++++
T Consensus 390 -~~~~~~~~~-~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 -HTNLSAITT-FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp -CTTCCCEEE-EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred -CCCCccEEE-EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 455666776 899999999998 89999999999998875 33444444444443
No 78
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=258.17 Aligned_cols=259 Identities=15% Similarity=0.178 Sum_probs=221.9
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~ 186 (430)
|.+.|.+++| +++ +|++|+.||.|++|| .+++.+..+..+ ..+..++|+|+++.|+ ++.++.|++||+.+++...
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 7889999999 455 999999999999999 667778888765 5677899999999988 8889999999998876432
Q ss_pred cC--CCCc--------------eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 187 PS--REGT--------------FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 187 ~~--~~~~--------------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
.. +... ....+++.+. ..+++++.+|.|++||+.+++.+..+..|...|.+++|+|+ .++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 22 1111 0334555543 45999999999999999999999999999999999999976 79999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|+.|++||+++++.+..+.. |...|.+++|+|++ .+++++.|+.|++||+++++.+..+..|...|.+++ |+|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s~~ 341 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR-ISQD 341 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE-ECTT
T ss_pred EcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE-EcCC
Confidence 99999999999999999988876 78899999999999 999999999999999999999999999999999999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCc--------------------eEEEEEeccC--cceeeeccCCceE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGE--------------------VLSRCVMDIG--SASSSSNKVSGVI 374 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~--------------------~~~~~~~~~~--~~~~~~~s~d~~v 374 (430)
+++|++++.||.|++||+.+++ ++..+..|.. .+..+.+++|+..
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 9999999999999999999888 8888888865 6766666666653
No 79
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-32 Score=248.02 Aligned_cols=244 Identities=23% Similarity=0.283 Sum_probs=203.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
+.+.+.+|.+.|.+++| +++ +|++|+.|+.|++|+............+ .......+++++..++ ++.|+.+++||.
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 56788999999999999 556 9999999999999999998887777665 4556688899999888 888999999999
Q ss_pred CCCcccccCCCCce--eeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTF--MKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
...........++. ....++.+.+. .+++++.|+.|++||+++++.+..+.+|.++|++++|+|+ ++|++|+.|+
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 87664333333322 23344444433 3789999999999999999999999999999999999986 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee---------ecCCCceEEEEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET---------RISPNVVYSLQH 325 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~v~~l~~ 325 (430)
.|++||+++.+.+..+. +...|.++.|+|++.++ +++.|+.|++||++++..+..+ .+|...|++++
T Consensus 238 ~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~- 313 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLD--GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA- 313 (340)
T ss_dssp EEEEEETTTTEEEEEEE--CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE-
T ss_pred eEEEEEeccCceeeeec--CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE-
Confidence 99999999999999888 45689999999988655 5567999999999987766544 36788999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|+|++++|++|+.||.|+|||+++|+
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999885
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-32 Score=249.34 Aligned_cols=249 Identities=15% Similarity=0.184 Sum_probs=218.3
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC-----Ce
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-----TR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-----~~ 173 (430)
...+..+.+|.+.|.+++| +++ +|++++.||.|++||+.+++.+..+.....+..++|++++..++ ++.+ +.
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 3467789999999999999 455 99999999999999999999999999878889999999999999 6666 89
Q ss_pred EEEEEcCCCccc-------------ccCCCC-ceeeeeEEEEcCCceEEEecCCeEEEEECCC-CeeeEEeecCCCCeEE
Q 014104 174 ICIWRRNGLRSV-------------FPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTS 238 (430)
Q Consensus 174 i~vwd~~~~~~~-------------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~ 238 (430)
|.+||+...... ...+.+ .....+++.+.+..+++++.||.|++||+++ ++.+..+..|...|.+
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence 999999865421 111111 1344566666777799999999999999998 7888999999999999
Q ss_pred EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--------------eEEEEe
Q 014104 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--------------YASCWD 303 (430)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~d 303 (430)
++|+|+ .++++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999976 799999999999999999999999888 677899999999999999999988 899999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+++.+..+.+|...|.+++ |+|++++|++++.||.|++|+++++...
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVA-ISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred cCCCcchhheecccCcEEEEE-ECCCCCEEEEEcCCCeEEEEECccccch
Confidence 999999999999999999999 9999999999999999999999865443
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-32 Score=255.12 Aligned_cols=248 Identities=15% Similarity=0.184 Sum_probs=203.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.+.+|.+.|++|+| ++| +|++|+.||+|++||+.+++.+..+.+|. ..+.++++++..++ ++.|+.+.+||.....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~-~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC-CceEEEeeCCCEEEEEeCCCceeEeeecccc
Confidence 44578889999999 566 99999999999999999999999988763 34566777888888 8899999999998765
Q ss_pred ccc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC--CEEEE--EeC
Q 014104 184 SVF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED--QLIIS--GSS 252 (430)
Q Consensus 184 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~--~~l~~--~~~ 252 (430)
... ..+... .....+.+.+..+++++.|+.+++||..+++ .+.....|.+.|.+++|+|. .++++ |+.
T Consensus 221 ~~~~~~~~h~~~-~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 221 HHVATLSGHSQE-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp CEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred eeeEEecccccc-eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 432 333332 3344555566679999999999999998765 35667789999999999974 56655 458
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
|++|++||+.+++....+. ....+.++.|+|+++.+++++ .|+.|++||+.+++++.++.+|.+.|++++ |+|+|
T Consensus 300 D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~-~spdg 376 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDG 376 (420)
T ss_dssp TCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTS
T ss_pred CCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCC
Confidence 9999999999999999888 455899999999999988765 789999999999999999999999999999 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++|+||+.|++|+|||+.+..+.+....+
T Consensus 377 ~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 377 ATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp SCEEEEETTTEEEEECCSCSSCC------
T ss_pred CEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 99999999999999999877665555443
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-32 Score=271.16 Aligned_cols=240 Identities=25% Similarity=0.343 Sum_probs=200.5
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
...+.+|.+.|.+++| +++ +|+||+.||+|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 4578899999999999 455 9999999999999999999999998876 5577899999999999 8899999999987
Q ss_pred CCccc--ccCCCCceeeeeEEE--EcC--CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 181 GLRSV--FPSREGTFMKGLCMR--YFD--PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~--~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+.... .....++...+.++. +.+ +.+++++.|++|++||++++++...+.+|.+.|++++|+|+ +++++|+.|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 65432 222233333334444 333 34999999999999999999999999999999999999986 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----------------
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP---------------- 317 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------- 317 (430)
|.|++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp SBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred CeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999999999999888776 456899999999999888775 4569999999988777654321
Q ss_pred ---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 318 ---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 318 ---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..+.+++ |+|+|++|++|+.||.|++||+.
T Consensus 660 ~~~~~~~~l~-~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 660 RKVIYCTSLN-WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -CCCCEEEEE-ECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceeEEeeeEE-EcCCCCEEEEEcCCCeEEEEecc
Confidence 1367888 99999999999999999999985
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-32 Score=255.27 Aligned_cols=246 Identities=13% Similarity=0.180 Sum_probs=209.5
Q ss_pred eEEEEeccccceeEEEe-cC--------CeEEEEeCCCeEEEEecCCCee-----EEeeecC------CceeEEEEe---
Q 014104 104 DIDQWKAHSVGVDQCRM-KR--------GLILTGVGDKVMRLWSLEGYKC-----VEEYSLP------NAASLVDFD--- 160 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~--------~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~------~~~~~~~~~--- 160 (430)
.+..+.+|...|.+++| ++ .+|++++.||.|++||+.+++. +..+..+ ..+..++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 47788899999999999 44 5899999999999999998876 7777766 677889999
Q ss_pred -cCCCE-EE-EEeCCeEEEEEcCC------Ccccc-----cC--------CCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 161 -FDESK-IV-GLIGTRICIWRRNG------LRSVF-----PS--------REGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 161 -~~~~~-l~-~~~~~~i~vwd~~~------~~~~~-----~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+++.. |+ ++.++.|++||+.+ ++.+. .. ........+++.+.+ .+++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99998 88 78899999999988 44332 11 122334455666667 89999999999999
Q ss_pred ECCCCeeeEEeec---C---CCCeEEEEecCC-CEEEEEeCC---CeEEEEeCCCCceeEEEecC------------CCC
Q 014104 219 DMYSRKCSQIIRM---H---CAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRVATLRST------------DCT 276 (430)
Q Consensus 219 d~~~~~~~~~~~~---~---~~~i~~~~~~~~-~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~------------~~~ 276 (430)
|+++++.+..+.. | ...|.+++|+|+ .++++++.| +.|++||+++++.+..+... |..
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 9999999999998 8 999999999976 899999999 99999999999999888752 677
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee------cC---------------CCceEEEEEeeCCC-----
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR------IS---------------PNVVYSLQHLQNDT----- 330 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~---------------~~~v~~l~~~s~~~----- 330 (430)
.|.+++|+|++++|++++.||.|++||+++++.+..+. .| ...|.+++ |+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~-~~~~g~~~~~ 371 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK-FLKKGWRSGM 371 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE-EECTTTSBST
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEE-eccccccccc
Confidence 99999999999999999999999999999999999998 77 89999999 99998
Q ss_pred -----CeEEEEcCCCeEEEEEcCCCc
Q 014104 331 -----STLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 331 -----~~l~s~~~dg~i~vwd~~~~~ 351 (430)
++|++++.||.|++||+.+|+
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.1e-32 Score=274.52 Aligned_cols=248 Identities=15% Similarity=0.239 Sum_probs=210.6
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
....+..+.+|.++|.+++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+|++..|+ ++.|+.|++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 34577889999999999999 555 9999999999999999999999998866 5678899999999998 888999999
Q ss_pred EEcCCCccc---ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecC--C-CEEE
Q 014104 177 WRRNGLRSV---FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSE--D-QLII 248 (430)
Q Consensus 177 wd~~~~~~~---~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~--~-~~l~ 248 (430)
||++++... +..+... ...+++.+ .+..+++++.||.|++||+.+++....+..+. ..+.+++|+| + .+++
T Consensus 124 w~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEGGGTSEEEEEEECCSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EECCCCceEEEEEcCCCCc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 999876432 2333332 34455555 45569999999999999999888877777655 8899999997 5 7999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
+++.||.|++||+.+++.+..+.+ |...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++ ++|
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~ 280 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA-THP 280 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE-ECT
T ss_pred EEeCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE-Ecc
Confidence 999999999999999999999987 788999999999999999999999999999999999999999999999999 999
Q ss_pred CCCe-EEEEcCCCeEEEEEcCCCc
Q 014104 329 DTST-LVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 329 ~~~~-l~s~~~dg~i~vwd~~~~~ 351 (430)
++.. +++++.++.+.+|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 281 TGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp TCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCceEEEEEeCCCEEEEEcCCCC
Confidence 9873 2444557779999876543
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=259.62 Aligned_cols=241 Identities=12% Similarity=0.176 Sum_probs=203.9
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC----CeeEEeeecC-CceeEEEEecC-CCEEE-EEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG----YKCVEEYSLP-NAASLVDFDFD-ESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-~~~~~~~~~~~-~~~l~-~~~~~~i~vwd~~ 180 (430)
+|...|.+++| +++ +|++|+.||.|++||+.+ .+.+..+..| ..+..++|+|+ ++.|+ ++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 58889999999 455 999999999999999987 3467777665 56788999998 78888 7889999999999
Q ss_pred CCc------ccccC--CCCce--eeeeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecC------CCCeEEEEecC
Q 014104 181 GLR------SVFPS--REGTF--MKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMH------CAPVTSLSLSE 243 (430)
Q Consensus 181 ~~~------~~~~~--~~~~~--~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~ 243 (430)
+++ ..... ...+. ...+++.+. +..+++++.||.|++||+++++.+..+..+ ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 22221 12222 334455555 445999999999999999999999888876 78999999998
Q ss_pred C--CEEEEEeCCC---eEEEEeCCCC-ceeEEEe-cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 244 D--QLIISGSSLG---SIAISGLSSD-QRVATLR-STDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 244 ~--~~l~~~~~dg---~i~vwd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+ .++++++.|+ .|++||++++ ..+..+. + |...|.+++|+| ++++|++++.|+.|++||+++++++..+..
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 6 5899999998 9999999986 5666666 4 888999999999 999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCce
Q 014104 316 SPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
|...|.+++ |+|++ .+|++++.||.|++||+.++..
T Consensus 304 ~~~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 304 RGNWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSSCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCceEEEE-ECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 999999999 99999 8999999999999999987653
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-32 Score=254.82 Aligned_cols=245 Identities=17% Similarity=0.227 Sum_probs=203.6
Q ss_pred EeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 103 IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
..+..+.+|.+.|.++++.+.+|++|+.||+|++||+.+++.+..+..+. .+..+++ ++..++ ++.|+.|++||+.
T Consensus 164 ~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC--CTTEEEEEETTSCEEEEECS
T ss_pred eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE--cCCEEEEeeCCCcEEEEeCC
Confidence 35678899999999999966699999999999999999999999888763 3444555 566777 8899999999998
Q ss_pred CCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 181 GLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 181 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
++.... ....++...+.++.+.+..+++|+.||.|++||+++++.+..+.+|...|.++.++ ++++++|+.||.|++
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 242 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRL 320 (435)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEE
T ss_pred CCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEE
Confidence 876431 22333334456777788889999999999999999999999999999999999994 579999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeecCCCceEEEEEeeCC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---------SLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~l~~~s~~ 329 (430)
||+++++.+..+.+ |...|.+++| ++.+|++|+.||.|++||+++++ .+..+.+|.+.|.+++ + +
T Consensus 321 wd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~--~ 394 (435)
T 1p22_A 321 WDIECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-F--D 394 (435)
T ss_dssp EETTTCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE-E--C
T ss_pred EECCCCCEEEEEeC-CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE-e--C
Confidence 99999999999987 8889999999 78899999999999999998766 7888999999999998 6 7
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
+.+|++++.||.|++||+.++......
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 889999999999999999876654443
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.1e-32 Score=249.43 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=204.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---cCCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.+..+.+|.+.|.+++| +++ +|++++.||.|++||+.+++....+. ....+..++|+++++.++ ++.++.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 67889999999999999 455 99999999999999999887655543 345677899999999998 8889999999
Q ss_pred EcCCCcc-----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEEC------------------CCCeeeEEeecCCC
Q 014104 178 RRNGLRS-----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM------------------YSRKCSQIIRMHCA 234 (430)
Q Consensus 178 d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~~~~~~~ 234 (430)
|++.... ............+++.+.+..+++++.||.|++||+ .+++.+..+..|..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence 9988752 111111233344555556667999999999999995 46788888989999
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC--Cce--
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT--MKS-- 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-- 309 (430)
.|.+++|+|+ +++++++.|+.|++||+++++.+..+.. |...|.+++|+|+++++++| .|+.|++|++++ ++.
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 9999999976 7999999999999999999999999987 77899999999999988887 899999999987 420
Q ss_pred ------------------------------e------eee-ecCCCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCC
Q 014104 310 ------------------------------L------WET-RISPNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 310 ------------------------------~------~~~-~~~~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~ 349 (430)
. ..+ .+|...|.++++++++| .+|++|+.||.|++||+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 48999999998666887 9999999999999999976
Q ss_pred Cc
Q 014104 350 GE 351 (430)
Q Consensus 350 ~~ 351 (430)
++
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-32 Score=252.54 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=197.7
Q ss_pred cccceeEEEe-cC----C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCC
Q 014104 111 HSVGVDQCRM-KR----G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 111 h~~~v~~~~~-~~----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~ 181 (430)
|.+.|.+++| ++ + +|++|+.||.|++||+.+++.+..+..+ ..+..++|+| ++..++ ++.|+.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 5678999999 44 4 8999999999999999999999999865 6678899999 888888 78899999999998
Q ss_pred CcccccC----CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--------------------------
Q 014104 182 LRSVFPS----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------------------------- 231 (430)
Q Consensus 182 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------- 231 (430)
++..... ........+++.+.+..+++++.||.|++||+++++.+..+..
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 8754332 1222334455556677799999999999999998765544433
Q ss_pred --CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce--------------eEEEecCCCCCeEEEEEecC--CCEEEEE
Q 014104 232 --HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR--------------VATLRSTDCTGIKTLCYNPC--SRLVFAG 293 (430)
Q Consensus 232 --~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~ 293 (430)
|...|.+++|+ ++++++++.|+.|++||+++++. +..+.. |...|.+++|+|+ +++|++|
T Consensus 228 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-SQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-SSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-cCCcEEEEEEcCCCCCcEEEEE
Confidence 89999999998 77999999999999999987754 667766 7789999999999 9999999
Q ss_pred eCCCeEEEEeCCCCcee----eeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 294 TTAGYASCWDLRTMKSL----WETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~----~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.||.|++||+.++++. ..+..| ...|.+++ |+|++++|++++.||.|++||+.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS-FSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEE-eCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999987644 367777 68999999 99999999999999999999985
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-31 Score=247.56 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=200.3
Q ss_pred EEEEec-cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 105 IDQWKA-HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~-h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...+.. |.+.|.+++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++| +++.++ ++.|+.|++||+
T Consensus 126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence 334444 8999999999 455 9999999999999999999999888865 34455655 677888 889999999999
Q ss_pred CCCcc---cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe--C
Q 014104 180 NGLRS---VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS--S 252 (430)
Q Consensus 180 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~--~ 252 (430)
..... .+..+.+. ...+++.+.+..+++|+.||.|++||+++++.+..+..|...|.+++|+|+ .++++++ .
T Consensus 204 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 204 RIANHQIGTLQGHSSE-VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp TSSSCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred ccCcceeeEEcCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 85442 23333333 334555556677999999999999999999999999999999999999984 5777765 7
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCcee--eeeecCCCceEEEEEeeC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSL--WETRISPNVVYSLQHLQN 328 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~ 328 (430)
|+.|++||+.+++.+..+. +...|.+++|+|+++++++ |+.||.|++||+.+++.. ..+.+|...|.+++ |+|
T Consensus 283 d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~-~s~ 359 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA-LSP 359 (401)
T ss_dssp TCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE-ECT
T ss_pred CCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE-ECC
Confidence 9999999999999999887 5678999999999999998 448999999999986544 34678999999999 999
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
++++|++++.||.|++||+.+++.+....
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 99999999999999999999988776654
No 90
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=8.1e-31 Score=229.83 Aligned_cols=280 Identities=12% Similarity=0.053 Sum_probs=188.2
Q ss_pred EeEEEEeccccc----eeEEEec--CC---eEEEEeCCCeEEEEecCCC---eeEEeeecCC-ceeEEEEecCCCEEEEE
Q 014104 103 IDIDQWKAHSVG----VDQCRMK--RG---LILTGVGDKVMRLWSLEGY---KCVEEYSLPN-AASLVDFDFDESKIVGL 169 (430)
Q Consensus 103 ~~~~~l~~h~~~----v~~~~~~--~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 169 (430)
..+.+|+...+. +.++.++ +. .+++++. ..|++|+..++ +.+++..+++ .+..+.+.||...|++-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 356677766543 3445552 22 5666665 69999999988 8888888765 34445555544333311
Q ss_pred eCCe-----EEEEEcCCC----cccccCCCCceeeeeEEEEcCCceEEEe---cCCeEEEEEC-CCCeeeEEeecCCCCe
Q 014104 170 IGTR-----ICIWRRNGL----RSVFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDM-YSRKCSQIIRMHCAPV 236 (430)
Q Consensus 170 ~~~~-----i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~vwd~-~~~~~~~~~~~~~~~i 236 (430)
.=|. |+..-+... ..... ..++...+..+ ....++.++ .|+.|++|++ .+++.+..+.+|...+
T Consensus 105 ~~~~~~~~~v~sla~spd~~~~~~~l~-s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSDDESEKQVLL-KSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE 181 (356)
T ss_dssp EECSSSEEEEEEECC------CCEEEE-EEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred eeccccccceEEEEECCCccccccEEE-eCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence 1111 111000000 00000 01111111111 223355554 4999999999 4588888888999999
Q ss_pred EEEEecC---C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--CCeEEEEEecCCCEE------------EEEeCCCe
Q 014104 237 TSLSLSE---D-QLIISGSSLGSIAISGLSSDQRVATLRSTDC--TGIKTLCYNPCSRLV------------FAGTTAGY 298 (430)
Q Consensus 237 ~~~~~~~---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l------------~~~~~dg~ 298 (430)
..++|++ + ..+++|+.|++|++||+.++++++++.+++. ..+.+++|+|+|.++ ++|+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 9988886 3 7999999999999999999999999986432 368888999999876 56788999
Q ss_pred EEEEeCCCCceeeee-----ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 299 ASCWDLRTMKSLWET-----RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 299 i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
|++||..+++.+..+ .+|...+.+.. .++.++++++.|++|+|||+.+++++.++.+|..
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~---~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~------------ 326 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGD---VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD------------ 326 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEE---EETTEEEEEETTSCEEEEETTTCSEEEEECCC--------------
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEccc---cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC------------
Confidence 999999999887654 36655554433 3478999999999999999999999999976544
Q ss_pred EEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 374 IERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 374 v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..+.+++| ||++|+||+.|++|||||+.
T Consensus 327 -----------------------~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 327 -----------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -----------------------CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred -----------------------CeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 23345666 57789999999999999963
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=274.67 Aligned_cols=252 Identities=14% Similarity=0.166 Sum_probs=200.2
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
+..+.||.+.|++++| +++ +|++|+.||+|++||+. +++.+..+.+| ..+..++|+++.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~---------------- 65 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---------------- 65 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT----------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC----------------
Confidence 3568899999999999 455 99999999999999998 45666666655 445556666541
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC---CCEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE---DQLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg 254 (430)
.+..+++|+.||.|++||+.+++ .+..+.+|...|.+++|+| +..+++|+.||
T Consensus 66 ----------------------~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 66 ----------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp ----------------------SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ----------------------CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 02237889999999999998886 6778888999999999997 47999999999
Q ss_pred eEEEEeCCCCc--eeEEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEeCCCC----ceeeeeec
Q 014104 255 SIAISGLSSDQ--RVATLRSTDCTGIKTLCYNP-------------CSRLVFAGTTAGYASCWDLRTM----KSLWETRI 315 (430)
Q Consensus 255 ~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~ 315 (430)
.|++||++++. ....+.+ |...|.+++|+| ++.++++|+.||.|++||++++ .....+.+
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 202 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (753)
T ss_dssp EEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred cEEEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence 99999998873 3344554 788999999999 5899999999999999999876 55667889
Q ss_pred CCCceEEEEEeeCC---CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 316 SPNVVYSLQHLQND---TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 316 ~~~~v~~l~~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
|...|.+++ |+|+ +.+|++++.||.|++||+.+++...... ....
T Consensus 203 h~~~V~~l~-~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-------------------------------~~~~ 250 (753)
T 3jro_A 203 HSDWVRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-------------------------------LLKE 250 (753)
T ss_dssp CSSCEEEEE-ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC-------------------------------BSSS
T ss_pred CCCcEEEEE-eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE-------------------------------Eecc
Confidence 999999999 9999 8999999999999999998764211100 0111
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|...|++++| +++++++|+.||.|++|++..+.
T Consensus 251 ~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 346778999999 58899999999999999998543
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=248.04 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=188.0
Q ss_pred cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEE
Q 014104 121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (430)
Q Consensus 121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 199 (430)
.++ ++++|+.||+|++||+.+++.+..+.. ..+..+.++|+ .+.++.|+.+++|+...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~--~~s~s~D~~i~~w~~~~------------------ 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA--IISRGPCNRLLLLYPGN------------------ 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS--EEEECSTTEEEEEETTT------------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc--eEEecCCCeEEEEEccC------------------
Confidence 344 999999999999999999988877762 23444555555 22267777777776543
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecC--C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSE--D-QLIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
.+.+||+.+++.+..+. .|.++|.+++++| + +++++++.||+|++||+++++........+.
T Consensus 105 --------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 105 --------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp --------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred --------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 45667877887666665 6778999999998 6 7999999999999999999999777766566
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee-eeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL-WETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+.+++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |.+.|.+++ |+|++.+|++++ |+.|++||+++++.+
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVK-FADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEE-ECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEE-EeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 68999999999999999999999999999999887 77888 999999999 999999999999 559999999987765
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe--eEEEE--cCeEEEEeeC-CCeEEEEEecCCC
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI--TCLAV--GMKKVVTTHN-SKYIRLWKFNYSD 427 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~--~~~~l~t~~~-Dg~v~vw~~~~~~ 427 (430)
..+..... |...+ .+++| ++++|++++. |+.|+||+++.+.
T Consensus 249 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 249 LAYPTYTI---------------------------------PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp BSSCCCBC--------------------------------------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeeccccc---------------------------------ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 44432111 11122 46777 5899999998 9999999997654
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.6e-31 Score=249.71 Aligned_cols=261 Identities=15% Similarity=0.179 Sum_probs=198.8
Q ss_pred CEeEEEEeccccceeEEEe-cC-C-eEEEEeCCCeEEEEecCC----------CeeEEeeecC-CceeEEEEecCCCEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEG----------YKCVEEYSLP-NAASLVDFDFDESKIV 167 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~l~ 167 (430)
........+|.+.|++++| ++ + +|++++.||.|++||+.+ .+.+..+..| ..+..++|++++..
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-- 195 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-- 195 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT--
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC--
Confidence 3445677889999999999 43 3 899999999999999986 4555555554 33444666655441
Q ss_pred EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-------eeEEeecCCCCeEEEE
Q 014104 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLS 240 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~ 240 (430)
.+++|+.||.|++||+.++. ....+.+|...|.+++
T Consensus 196 -------------------------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 238 (430)
T 2xyi_A 196 -------------------------------------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238 (430)
T ss_dssp -------------------------------------EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEE
T ss_pred -------------------------------------eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeE
Confidence 26677777777777776532 1456678999999999
Q ss_pred ecC-C-CEEEEEeCCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC-Cceeeee
Q 014104 241 LSE-D-QLIISGSSLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT-MKSLWET 313 (430)
Q Consensus 241 ~~~-~-~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~ 313 (430)
|+| + .++++++.||.|++||++++ +.+..+.. |...|++++|+|++. ++++|+.||.|++||+++ .+++..+
T Consensus 239 ~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 997 4 78999999999999999987 56677765 888999999999987 688999999999999998 5678889
Q ss_pred ecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 314 RISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
..|...|.++. |+|+++ +|++++.||.|++||+........... ..++ ...+....
T Consensus 318 ~~h~~~v~~i~-~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~------------~~~~~~~~ 374 (430)
T 2xyi_A 318 ESHKDEIFQVQ-WSPHNETILASSGTDRRLHVWDLSKIGEEQSTED----------AEDG------------PPELLFIH 374 (430)
T ss_dssp ECCSSCEEEEE-ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH----------HHHC------------CTTEEEEC
T ss_pred ecCCCCEEEEE-ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc----------cccC------------CcceEEEc
Confidence 99999999999 999985 689999999999999986321110000 0000 00111122
Q ss_pred CCCCCCeeEEEEc--Ce-EEEEeeCCCeEEEEEecC
Q 014104 393 KTIRPPITCLAVG--MK-KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 393 ~~h~~~v~~v~~~--~~-~l~t~~~Dg~v~vw~~~~ 425 (430)
.+|...|++++|+ +. +|++++.||.|+||++..
T Consensus 375 ~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 4577899999994 55 899999999999999864
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=262.23 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=177.4
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCccc------ccCCCCceeeeeEEEEc------CCceEEEecCCeEEEEECCCCee--
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLRSV------FPSREGTFMKGLCMRYF------DPEAVVGCEDGTARVFDMYSRKC-- 225 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~-- 225 (430)
|+++.++ ++.|+.|++||+++++.. +..+.+. +..+++.+. +..|++++.||+|++||+.+++.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~-V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE-VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCS-EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc-EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3444455 567889999999876532 1222232 344566654 24699999999999999987642
Q ss_pred ---------eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEE--EEecCC-CEEEE
Q 014104 226 ---------SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTL--CYNPCS-RLVFA 292 (430)
Q Consensus 226 ---------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~ 292 (430)
...+.+|...|++++|+++..|++|+.||+|++||++++. +...+.+ |...|.++ .|+|+| ++|++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEE
Confidence 2467789999999999987899999999999999999764 4455666 88899999 578888 89999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccC
Q 014104 293 GTTAGYASCWDLRTMKSLWETRISPN--VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~ 370 (430)
|+.|++|++||+++++++..+.+|.. .|.+++ |+|+++.+++++.|++|++||++++.++.++.+|.
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~-fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~---------- 397 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV-YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE---------- 397 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE-EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS----------
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceE-eCCCcCeEEEeCCCCcEEEEECcccccceeeecCC----------
Confidence 99999999999999888877777753 478898 99999999999999999999999998888777644
Q ss_pred CceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 371 SGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 371 d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
..|++|+| ++++|++|+.||+|++|++..
T Consensus 398 --------------------------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 --------------------------TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp --------------------------SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred --------------------------CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 47888888 477899999999999999754
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.7e-32 Score=250.80 Aligned_cols=274 Identities=13% Similarity=0.114 Sum_probs=213.5
Q ss_pred ceeEEEecCC---eEEEEeCCCeEEEEecCCCe----eEEeeecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCCCc
Q 014104 114 GVDQCRMKRG---LILTGVGDKVMRLWSLEGYK----CVEEYSLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
....+++++. ++++++.||.|+|||+.... .+..+.+| ..+..++|+| +++.|+ ++.|+.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445666544 45568899999999986542 23344444 5678899999 888888 8889999999998763
Q ss_pred c---------cccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEe--ecCCCCeEEEEecCC-CEEEEE
Q 014104 184 S---------VFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 184 ~---------~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
. .+..+... +..+++.+.+ ..+++++.||.|++||+++++.+..+ ..|...|.+++|+|+ .+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CSSCBCSCSEEEECCSSC-EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CccccCCceEEecCCCCe-EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 1 22333332 3445566665 35999999999999999999999999 789999999999976 799999
Q ss_pred eCCCeEEEEeCCCCceeEEE-ecCCCC-CeEEEEEecCCCEEEEE---eCCCeEEEEeCCCCce-eeeee-cCCCceEEE
Q 014104 251 SSLGSIAISGLSSDQRVATL-RSTDCT-GIKTLCYNPCSRLVFAG---TTAGYASCWDLRTMKS-LWETR-ISPNVVYSL 323 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~-~~~~~~-~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~v~~l 323 (430)
+.|+.|++||+++++.+..+ .. |.+ .+.++.|+|++++|++| +.|+.|++||+++++. +.... .|...+.++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS-SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccC-CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 99999999999999999988 45 555 48999999999999999 7899999999998664 33332 466789999
Q ss_pred EEeeCCCCeEE-EEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 324 QHLQNDTSTLV-VGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 324 ~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
+ |+|++++|+ +|+.||.|++||+.+++. +..+..+. |...|++
T Consensus 274 ~-~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~----------------------------------~~~~v~~ 318 (402)
T 2aq5_A 274 F-FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS----------------------------------SKESQRG 318 (402)
T ss_dssp E-EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----------------------------------CSSCCSE
T ss_pred E-EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----------------------------------cCCcccc
Confidence 8 999999886 566899999999998874 55555432 3357888
Q ss_pred EEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 402 LAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 402 v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
++|. +.+++ +.|+.+++|++.++
T Consensus 319 ~~~sp~~~~~~--s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 319 MGYMPKRGLEV--NKCEIARFYKLHER 343 (402)
T ss_dssp EEECCGGGSCG--GGTEEEEEEEEETT
T ss_pred eEEecccccce--ecceeEEEEEcCCC
Confidence 8884 44444 45679999999875
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.7e-32 Score=246.36 Aligned_cols=242 Identities=15% Similarity=0.171 Sum_probs=195.5
Q ss_pred EeccccceeEEEe-cC---C-eEEEEeCCCeEEEEecCCCe-eEEeeecC-CceeEEE------EecCCCEEE-EEeCCe
Q 014104 108 WKAHSVGVDQCRM-KR---G-LILTGVGDKVMRLWSLEGYK-CVEEYSLP-NAASLVD------FDFDESKIV-GLIGTR 173 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~---~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~~~~~~------~~~~~~~l~-~~~~~~ 173 (430)
..+|.+.|.+++| ++ + +|++|+.||.|++||+.+++ .+..+..+ ..+..+. |+++++.|+ ++.|+.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 3479999999999 44 4 99999999999999999887 77788766 4466674 467898988 888999
Q ss_pred EEEEEcCCCcc---cccCCCCc---eeeeeE----EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 174 ICIWRRNGLRS---VFPSREGT---FMKGLC----MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 174 i~vwd~~~~~~---~~~~~~~~---~~~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
|++||+.++.. .+..+.++ ....+. +.+.+..+++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 99999998752 22222322 222222 235666699999999999999999887544 56889999999997
Q ss_pred ---C-CEEEEEeCCCeEEEEeCCCCceeEEEe-----cCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCC------
Q 014104 244 ---D-QLIISGSSLGSIAISGLSSDQRVATLR-----STDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTM------ 307 (430)
Q Consensus 244 ---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------ 307 (430)
+ +.+++++.||.|++||+++++....+. . |...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 5 899999999999999998877655544 4 888999999999998 8999999999999999854
Q ss_pred -------------ceeeeeecCCCceEEEEEeeCCCCeEE-EEcCCCeEEEEEcCCCce
Q 014104 308 -------------KSLWETRISPNVVYSLQHLQNDTSTLV-VGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 308 -------------~~~~~~~~~~~~v~~l~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~ 352 (430)
+.+..+.+|...|.+++ |+|++++|+ +++.||.|++||+.+.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLD-WSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCccccccccceeeccccCCCCeeEEE-EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 35667888999999999 999999998 899999999999987654
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-31 Score=248.16 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=215.6
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCe---eEEeeecCC-----------------------------------
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYK---CVEEYSLPN----------------------------------- 152 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~----------------------------------- 152 (430)
..++.+++| ++|.++.++.++.|++||+.+++ .+..+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357889999 46644445568899999999988 666555321
Q ss_pred --------------------ceeEEEEecCCCEE-E-EEeCCeEEEEEcC--CCcccccC---CCCceeeeeEEEEcCCc
Q 014104 153 --------------------AASLVDFDFDESKI-V-GLIGTRICIWRRN--GLRSVFPS---REGTFMKGLCMRYFDPE 205 (430)
Q Consensus 153 --------------------~~~~~~~~~~~~~l-~-~~~~~~i~vwd~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 205 (430)
.+..++|+|+++.| + ++.|+.|++||+. +++..... ........+++.+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 36779999999997 5 6679999999998 66533221 11223345666667777
Q ss_pred eEEEecCCeEEEEECCCCeeeE----EeecCCCCeEEEEecCC----CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQ----IIRMHCAPVTSLSLSED----QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|++|+.+|.|++|++.+++... .+.+|...|.+++|+|+ .+|++|+.|+.|++||+++++.+..+...|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998877554 77889999999999975 489999999999999999999888855448889
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-------------------------CCceEEEEEeeCCCCe
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-------------------------PNVVYSLQHLQNDTST 332 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~v~~l~~~s~~~~~ 332 (430)
|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ...|.++. ++|++++
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII-KSKNLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE-ECSSSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE-EeCCCCE
Confidence 9999999 9999999999999999999999888777532 35688998 9999999
Q ss_pred EEEEc-CCCeEEEEEc--CCC---ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-
Q 014104 333 LVVGG-IDGVLRVLDQ--NTG---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG- 405 (430)
Q Consensus 333 l~s~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~- 405 (430)
|++++ .|+.|++||+ .++ +.+..+..+ ..|.+++|+
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-------------------------------------~~v~~~~~~~ 364 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-------------------------------------YNVISLSAHN 364 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-------------------------------------SCEEEEEEET
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-------------------------------------CceEEEEecC
Confidence 99998 8999999999 555 445555432 468888885
Q ss_pred CeEEEEeeC-------CCeEEEEEecCC
Q 014104 406 MKKVVTTHN-------SKYIRLWKFNYS 426 (430)
Q Consensus 406 ~~~l~t~~~-------Dg~v~vw~~~~~ 426 (430)
+..+++.+. +..|++|.+...
T Consensus 365 ~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 365 DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 344544432 556899988653
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-30 Score=233.79 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=198.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.+.+|...|++++| +++ +|++|+.||+|++||+++++.+..+.+|. ....++++++..++ ++.++.+.+|+.....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-ceEEEeecCCCEEEEEecCCceEeeecCCCc
Confidence 34578889999999 455 99999999999999999999999998764 34567788888888 8889999999998775
Q ss_pred ccccCCCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCee----eEEeecCCCCeEEEEecCC--CE--EEEEeCC
Q 014104 184 SVFPSREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLSED--QL--IISGSSL 253 (430)
Q Consensus 184 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~~~~--~~--l~~~~~d 253 (430)
.......++ ......+...+..+++++.||.|++||+++++. ......+.+.|.++.++|. .. +++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 433222222 223344555666799999999999999988753 3455678889999999964 33 3567789
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
+.|++||.+......... +...+..+.|+|+++.+++++ .|+.|++||+++++++.++.+|.+.|++++ |+|+++
T Consensus 221 ~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~-~spdg~ 297 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGA 297 (318)
T ss_dssp CEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCC
Confidence 999999999888877766 667899999999999888654 799999999999999999999999999999 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCc
Q 014104 332 TLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~ 351 (430)
+|++|+.||+|+|||+.+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEETTTEEEEECCSCCC
T ss_pred EEEEEecCCeEEEEECCCCC
Confidence 99999999999999997653
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=233.80 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=201.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
......+.+|.+.|.+++| +++ ++++|+.||.|++|++... +.+..+..+ ..+..+++ +++.++ ++.|+.|
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 4467788899999999999 455 9999999999999998754 455566554 34444555 677888 8889999
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCCCEEEEEeC
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~ 252 (430)
++||.......+..+...+ ..+.+.+ .+..+++++.||.|++|| .++....+.. |...|.+++|+|+..+++++.
T Consensus 127 ~~~d~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 127 KVWKEGSLVYNLQAHNASV-WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp EEEETTEEEEEEECCSSCE-EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred EEEcCCcEEEecccCCCce-eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 9999333333444454443 3344444 666799999999999999 5667777776 889999999998866999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
||.|++||+++++.+..+.. |...|.+++|+|++ .|++++.||.|++||+++++.+..+..|...|.+++ |+|+++
T Consensus 204 dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~-~~~~~~- 279 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD-CMSNGD- 279 (313)
T ss_dssp TSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE-ECTTSC-
T ss_pred CCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE-EccCCC-
Confidence 99999999999999999987 88899999999999 588999999999999999999999999999999999 999998
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+++++.||.|++||+++++.+....
T Consensus 280 ~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEeCCCcEEEEeCCCCceeehhh
Confidence 6678899999999999887655443
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-31 Score=243.97 Aligned_cols=241 Identities=10% Similarity=0.116 Sum_probs=188.8
Q ss_pred EEeccccceeEEEecCCeEEEE-----------eCCCeEEEEecCCCee-E---Eeeec------CCceeEEEEecCCCE
Q 014104 107 QWKAHSVGVDQCRMKRGLILTG-----------VGDKVMRLWSLEGYKC-V---EEYSL------PNAASLVDFDFDESK 165 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~~~l~s~-----------~~dg~i~iwd~~~~~~-~---~~~~~------~~~~~~~~~~~~~~~ 165 (430)
.|.+|.+.|.+++++.+.+++| +.|+++++|++.+... + ..... ...+.+++|+|||++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 4678899999999876666655 4578899999865432 1 11111 123667999999999
Q ss_pred EE-EE--eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEE
Q 014104 166 IV-GL--IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLS 240 (430)
Q Consensus 166 l~-~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~ 240 (430)
++ ++ .|+.|++||+++++.+........+..+++.+++..+++++.+ .+.+|+..+++.+. ....|...|.+++
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 87 44 4799999999998865543333345567777777778888755 56667766776553 3456888999999
Q ss_pred ecCC-CEEEEEeCCC----eEEEEeCCCCce----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 241 LSED-QLIISGSSLG----SIAISGLSSDQR----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg----~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
|+|+ ..+++++.|+ .++.||+..... ...+.+ |...|++++|+|+|++||+|+.|++|+|||+++++++.
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 9976 7888888777 688999876654 234555 77899999999999999999999999999999999998
Q ss_pred ee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 312 ET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 312 ~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+ .+|...|++++ |+|||++|++||.|++|+|||+...
T Consensus 306 ~~~~gH~~~V~~v~-fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 306 IFKQAHSFAITEVT-ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSSSSCEEEEE-ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EecCcccCCEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 75 78999999999 9999999999999999999999643
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-31 Score=244.26 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=202.3
Q ss_pred EecCCCeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCcccccC----CCCceeeeeEEEE-cCCceEE
Q 014104 137 WSLEGYKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRSVFPS----REGTFMKGLCMRY-FDPEAVV 208 (430)
Q Consensus 137 wd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~ 208 (430)
|++...+....+..+ ..+..++|++++ ++|+ ++.|+.|++||+.+++..... +.. .+..+++.+ .+..+++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD-AITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC-BEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC-ceeEEEeCCCCCCEEEE
Confidence 344555666666665 567889999998 7888 888999999999987643222 222 233445554 3456999
Q ss_pred EecCCeEEEEECCCCeeeEEeecC---CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 209 GCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
++.|+.|++||+.+ +.+..+..+ ...|.+++|+|+ .++++|+.|+.|++||+ +++.+..+.. |...|.+++|+
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~ 213 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFN 213 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEEC
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEEC
Confidence 99999999999985 555566544 478999999976 89999999999999999 5778888887 88899999999
Q ss_pred cCCC-EEEEEeCCCeEEEEeCCC----CceeeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 285 PCSR-LVFAGTTAGYASCWDLRT----MKSLWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 285 ~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++ |+| ++.+|++++.|+.|++||+.+++....+..
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 9999 999999999999999998 5555555 6899999999 999 999999999999999999999988888876
Q ss_pred ccCcce------eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 359 DIGSAS------SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 359 ~~~~~~------~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|..... .+.+++ ...+.++++ ++++ +|+.||.|++||+.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~p-------------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHP-------------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp CCBCCCTTSCCCCCEECS-------------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred ccccccccccceEEeccC-------------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 654110 011111 124445555 4655 899999999999988764
No 102
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.1e-29 Score=232.59 Aligned_cols=255 Identities=11% Similarity=0.092 Sum_probs=210.7
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRIC 175 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~ 175 (430)
....+..+.+|.. +.+++| +++ ++ ++++.|++|++||+.+++.+..+..+..+..++|+|+++.++ ++ .++.|+
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEE
Confidence 3456677777755 799999 566 55 677799999999999999999999888888999999999886 44 469999
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~ 252 (430)
+||+.+++.............+++.+++..+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+ +.+ ++++.
T Consensus 100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCC
Confidence 9999988754433333334556666667666 68888999999999999998888765 55799999976 555 67788
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+..|. .+.+++ ++|+
T Consensus 179 ~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~-~s~d 254 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIA-VTPD 254 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEE-ECTT
T ss_pred CCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEE-EccC
Confidence 9999999999999888877 556899999999999999887 68999999999999888888764 578888 9999
Q ss_pred CCeE-EEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTL-VVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++| ++++.|+.|++||+.+++.+..+..+..
T Consensus 255 g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 255 GKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9977 6778999999999999999999987655
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.4e-30 Score=236.10 Aligned_cols=262 Identities=12% Similarity=0.109 Sum_probs=215.9
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.+++++.|+.|++||+.+++.+..+..+..+..++|+|+++.++ ++.++.|++||+.+++.............+++.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp 83 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP 83 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC
Confidence 67889999999999999999999999888888999999999875 4479999999999887654433333445566666
Q ss_pred cCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 202 FDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
++..++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+ +.+ ++++.++.|++||+.+++.+..+.. ...+
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~ 160 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSP 160 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCc
Confidence 777665 5556799999999999988888754 57899999976 555 7888899999999999999888874 3568
Q ss_pred EEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceEE
Q 014104 279 KTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 279 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~ 354 (430)
.+++|+|+++.+ ++++.++.|++||+++++.+..+.. ...+.+++ ++|++++|++++ .++.|++||+.+++.+.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceE-ECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence 999999999987 5778899999999999988777664 46788998 999999998888 68999999999998887
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE-EEeeCCCeEEEEEecCCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV-VTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l-~t~~~Dg~v~vw~~~~~~ 427 (430)
.+..+. .+.+++| +++++ ++++.|+.|++||+.+++
T Consensus 239 ~~~~~~-------------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 239 RIPVGP-------------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEECCS-------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecCC-------------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 776422 3567777 46665 788899999999998765
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=248.16 Aligned_cols=257 Identities=10% Similarity=0.030 Sum_probs=198.9
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 186 (430)
.-...|.+++| +|| ++||++.|++|+ |...++.+ .+| ..+..++|+|+| .++.+.+|+.+.....-
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE------FENKLDFELAQQNGLLN 81 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC------CCCTTTTSCCCSSCSST
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC------CcceEEEEeCCCceEee
Confidence 34578999999 677 999999999999 76665544 444 667889999998 45666666654433222
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-----CeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-----PVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
..+ ...+..+++++++..+++++.||.|++||.++ ++..+. |.. .|.+++|+|+ ++|++|+.||+|++||
T Consensus 82 ~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 82 SQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp TSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred cCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 233 55567788888899999999999999999643 666677 665 4999999986 8999999999999999
Q ss_pred CCCCce-------eEEEe---cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eeee-ecCCCceEEEEEe
Q 014104 261 LSSDQR-------VATLR---STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS---LWET-RISPNVVYSLQHL 326 (430)
Q Consensus 261 ~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~l~~~ 326 (430)
+.++.. +.++. .+|...|.+++|+|+| +++++.|++|++||+..++. ..++ .+|...|.+++ |
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva-F 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK-I 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE-E
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE-E
Confidence 998753 56663 3367899999999999 88889999999999988763 2456 47888999999 8
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-- 404 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 404 (430)
+ |+.|++++ +++|++||+.+++......+ |...|..+++
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~g------------------------------------h~~~V~~va~~~ 275 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTG------------------------------------SLENFHIIPLNH 275 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECS------------------------------------CCSCCCEEEETT
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcC------------------------------------CCceEEEEEeee
Confidence 7 68899887 69999999997666333223 4456666666
Q ss_pred --cCeEEEEeeCCCeEEEEEec
Q 014104 405 --GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++..++++++||+ ++|.++
T Consensus 276 s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEESS
T ss_pred CCCCCEEEEEcCCCC-EEEeec
Confidence 2456888888888 888763
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-32 Score=248.50 Aligned_cols=234 Identities=16% Similarity=0.138 Sum_probs=185.3
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--c--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK- 224 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 224 (430)
...+..++|+|++++|+ ++.|+.|++||+.++. . .+..+... +..+++.+.+..+++++.||.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI-VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC-EEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce-EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 35788899999999999 7799999999999873 2 23333332 3445566666779999999999999999887
Q ss_pred --eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 225 --CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 225 --~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
....+..|...|.+++|+|+ +++++++.|+.|++||+++++ ....+...|...|.+++|+|++++|++++.|+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 66778889999999999976 799999999999999999887 367777658889999999999999999999999
Q ss_pred EEEEeCC------------------CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce----EEEE
Q 014104 299 ASCWDLR------------------TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV----LSRC 356 (430)
Q Consensus 299 i~i~d~~------------------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~ 356 (430)
|++||++ .++++..+ +|...|.+++ |+|++++|++++.||.|++||+.+++. +..+
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG-FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE-ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 9999985 35566667 8999999999 999999999999999999999998876 4444
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.. |...|++++| ++++|++|+.|+.+ +|+..
T Consensus 248 ~~------------------------------------~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 248 KL------------------------------------SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EC------------------------------------SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cC------------------------------------CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 43 5568999998 68889998877766 66554
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-30 Score=240.86 Aligned_cols=247 Identities=10% Similarity=0.100 Sum_probs=193.1
Q ss_pred ccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC---CEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE---SKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~~~~i~vwd~~~~ 182 (430)
+|.+.|.+++| + ++ +|++++.||.|++||+.+++....+.....+..+.+.+.+ ..++ ++.++.|++||+.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 59999999999 4 44 9999999999999999999999999888888889998854 4777 888999999999987
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe-eeEEe---------------ecCCCCeEEEEecC
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-CSQII---------------RMHCAPVTSLSLSE 243 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~---------------~~~~~~i~~~~~~~ 243 (430)
+.. +..+.. ....+++.+.++. +++++.||.|++||++++. ++..+ ..|...|.+++|+|
T Consensus 177 ~~~~~~~~~~~-~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 177 SCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp CCCEEECCCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred ceeeeecCCCC-cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 643 233333 2344566666775 8899999999999998765 44444 56889999999998
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeEEEecCC----CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC
Q 014104 244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTD----CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 244 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 318 (430)
+ .++++++.||.|++||+.+++....+.... ...+........+..+++++.++.|++||+.+++++..+.+|.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 6 799999999999999999987755443211 11222222233455677778899999999999999999999999
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.|.+++ |+|++++|++++.||.|++||+.+++.+.....
T Consensus 336 ~v~~~~-~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 336 TVDCCV-FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp CEEEEE-EETTTTEEEEEETTSCEEEEEECC---------
T ss_pred eEEEEE-EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 999999 999999999999999999999999887765543
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=1e-30 Score=246.08 Aligned_cols=246 Identities=12% Similarity=0.055 Sum_probs=186.6
Q ss_pred EEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 105 IDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+..+.+|.+.|++++|+ ++ +|+||+.||+|++||++++........+ ..+..++|++++..|+ ++.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 44567899999999994 44 9999999999999999876544333332 2345689999999999 8889999999
Q ss_pred EcCCCcc-cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeE---EeecCCCCeEEEEecCC-CEEEEEe
Q 014104 178 RRNGLRS-VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ---IIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 178 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|+++... .+..+... +..+++.+.++. +++|+.|+.|++||+++.+... ...+|...|++++|+|+ .+|++++
T Consensus 237 d~~~~~~~~~~~h~~~-v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 237 NMDGKELWNLRMHKKK-VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ESSSCBCCCSBCCSSC-EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ccCcceeEEEecccce-EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 9986542 23333333 233445555554 7899999999999998876443 33579999999999976 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCC------CeEEEEEecCCCEEEEEe------------CCCeEEEEeCCCCceeeee
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCT------GIKTLCYNPCSRLVFAGT------------TAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~ 313 (430)
.||.|++||+.+++....+.. |.. .+....|+|++..++++. .++.|++||..+++.+..+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIP-HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECC-CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CCCEEEEEECCCCccceEEec-ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 999999999999988777764 321 234556777777777664 3357999999999988876
Q ss_pred e-cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 314 R-ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 314 ~-~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
. +|...|.++..|+|+|.+|++|+ |+.|+|||+++++..
T Consensus 395 ~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 4 67788888855999999999886 889999999988653
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=6.9e-31 Score=248.11 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=190.9
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-------------cccCCC-----------CceeeeeEEEEcC-
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-------------VFPSRE-----------GTFMKGLCMRYFD- 203 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-------------~~~~~~-----------~~~~~~~~~~~~~- 203 (430)
..+.+..++|+|++++|+ ++.||.|++||+.+++. .+..+. ...+..+++.+.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 346788899999999999 88899999999987652 223333 0224456666666
Q ss_pred -CceEEEecCCeEEEEECCCCeee---------------------------------------EE-eecCCCCeEEEEec
Q 014104 204 -PEAVVGCEDGTARVFDMYSRKCS---------------------------------------QI-IRMHCAPVTSLSLS 242 (430)
Q Consensus 204 -~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~~~~ 242 (430)
..+++++.||.|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 56999999999999998764432 12 35799999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCC-CceeEEE------ecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce----
Q 014104 243 ED-QLIISGSSLGSIAISGLSS-DQRVATL------RSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS---- 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---- 309 (430)
|+ +++++| .|+.|++||+++ ++.+..+ ...|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 86 788888 799999999984 4444432 12378899999999998 9999999999999999999886
Q ss_pred eeeeecCCC------------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-CceEEEEEeccCcceeeeccCCceEEE
Q 014104 310 LWETRISPN------------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 310 ~~~~~~~~~------------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
+..+..|.. .|.+++ |+|++++|++++. +.|++||+++ ++++..+..|......+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~-------- 335 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS-------- 335 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH--------
T ss_pred eeEeccCCCccccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc--------
Confidence 677888775 899999 9999999999998 9999999997 8888888776431100000
Q ss_pred eecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
... ...-..+..++| ++++|++|+.||.|++||+.+++.
T Consensus 336 -----~~~--------~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 336 -----LYE--------NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp -----HHH--------TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred -----ccc--------ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 000 000001334666 688999999999999999988753
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.3e-30 Score=232.67 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=201.6
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc----ccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEEC-CCCe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDM-YSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~-~~~~ 224 (430)
+.+..++|+|+++.|+ ++.|+.|++|++.++. .............+++.+.+. .+++|+.||.|++||+ .+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 5678899999999988 8889999999998776 222222233455677888888 8999999999999999 7775
Q ss_pred eeEEeec--CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC---------CceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 225 CSQIIRM--HCAPVTSLSLSEDQLIISGSSLGSIAISGLSS---------DQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 225 ~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
. ..+.+ |...|.+++|+|++.+++++.|+.|++||+++ ++.+..+. +...|.+++|+|++ ++++
T Consensus 92 ~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~ 166 (342)
T 1yfq_A 92 F-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVG 166 (342)
T ss_dssp E-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEE
T ss_pred e-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEE
Confidence 5 67788 99999999999988999999999999999987 77666665 77899999999887 8999
Q ss_pred eCCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCC------ceEEEEEeccCcc
Q 014104 294 TTAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTG------EVLSRCVMDIGSA 363 (430)
Q Consensus 294 ~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~ 363 (430)
+.|+.|++||+++ +.. ......|...+.+++ ++| +++++++++.||.|++|+++.. +....+..|....
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEE-ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 9999999999998 543 234456778999999 999 9999999999999999999876 7777777654310
Q ss_pred eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 364 SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 364 ~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
....|...|++++| ++++|++|+.||.|++||+.+++.
T Consensus 246 ---------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 246 ---------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp ---------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ---------------------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 01246679999999 588999999999999999987753
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-31 Score=249.60 Aligned_cols=307 Identities=11% Similarity=0.045 Sum_probs=223.9
Q ss_pred CchHHHHHHHHcccchhhcccCCEeE--------EEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec
Q 014104 80 SSMRLHLEELAMKHHRFALEEGRIDI--------DQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL 150 (430)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 150 (430)
.+++.|+..++++++++.+..+.... +.+.||.+.|.+++| |+| .++++.+|+.+.. .+..+.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~ 84 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQP 84 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCC
Confidence 34456666777888887777755432 234799999999999 566 4555555554322 2333334
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCC----ceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG----TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK- 224 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 224 (430)
...+..++|+|+|..|+ ++.||.+++||.++.-..+. +.. .....+++++++..|++|+.||+|++||+.+++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 56788899999999999 89999999999655222222 222 135678888899999999999999999998875
Q ss_pred ------eeEEe----ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEE
Q 014104 225 ------CSQII----RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 225 ------~~~~~----~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
.+.++ .+|.+.|.+++|+|+. +++++.|++|++||+..+.. .+++...|...|.+++|+ |+.|+
T Consensus 164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 25666 5677899999999988 99999999999999988773 356653477899999999 68999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe--eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeecc
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL--QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNK 369 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s 369 (430)
+++ +++|++||+.+++......+|.+.|..++ + +|++..|++++.||+ ++|..+. +...++...++..
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va-~~~s~d~~~La~a~edG~-klw~~d~------~~~spd~~l~a~~- 310 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIP-LNHEKESTILLMSNKTSY-KVLLEDE------LHVTADNIIAPYL- 310 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEE-ETTCSSCEEEEECSSCEE-EEEESSS------EEEECCCSSHHHH-
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEE-eeeCCCCCEEEEEcCCCC-EEEeecc------EEECCCceEEEEc-
Confidence 887 69999999998777444448999999998 9 999999999999999 9999872 2233333322222
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
|+++..|+. . +..+..+ . +...|.++++ ||+.+|+++.
T Consensus 311 -d~~v~lW~~---~-g~~l~~~-~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 -EKKFKKWST---I-WNEFNNY-E-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -HHHHHHTTT---T-TTSSSSS-C-CEEEEEEEEECTTSSEEEEEEE
T ss_pred -CCEEEEEEC---C-CCceeee-c-cceEEEEEEECCCCCEEEEEEe
Confidence 555544432 1 1112211 2 2456899999 6888988874
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.1e-30 Score=232.82 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=184.1
Q ss_pred EEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCC
Q 014104 136 LWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDG 213 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg 213 (430)
+|++.+.+.+.....| ..+..++|+||++.|+++.+..+++|++++.+......... ...+.+.+.++.+ ++++.|+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSSTT
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCcc
Confidence 4666666666655554 67888999999999997777789999998876544333222 3445555555554 6778889
Q ss_pred eEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEE
Q 014104 214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
+|++||..+++++..+. +...|.+++++++..++ + .|+.|++||+.++ +.+..+.. +...+++++ .++++
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEE
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEE
Confidence 99999999999998887 67799999998764333 3 4789999999988 66666653 445566777 56665
Q ss_pred --EeCCCeEEEEeCCCCc---------------e-eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceE
Q 014104 293 --GTTAGYASCWDLRTMK---------------S-LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVL 353 (430)
Q Consensus 293 --~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~ 353 (430)
|+.||.|++||+++++ + +..+.+|.+.|.+++ |+|+|++|++|+.||+ |++||+.+++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~-~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-LNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE-ECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 6889999999999865 2 678899999999999 9999999999999998 999999999999
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.++.. ..|...|++++| ++++|++|+.|++|++||+..+
T Consensus 232 ~~~~~----------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 232 REFRR----------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEC----------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEc----------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 88862 115568999999 5889999999999999999765
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.6e-29 Score=235.43 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=191.1
Q ss_pred eEEEEecCCCEEE--EEeCCeEEEEEcCCCcc------cccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCC--
Q 014104 155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRS------VFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR-- 223 (430)
Q Consensus 155 ~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-- 223 (430)
..++++++...++ ++.+|.|.+|++..... .+..|.+. +..+++.+ .+..+++|+.||.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~-V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAP-VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSC-EEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCC-EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3467777766555 57799999999966432 12223322 33344544 4556999999999999999987
Q ss_pred -----eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe-cCCCCCeEEEEEecCCCEEEEEeC
Q 014104 224 -----KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR-STDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 224 -----~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
+++..+.+|...|.+++|+|+ .++++++.|+.|++||+++++.+..+. ..|...|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 668889999999999999976 589999999999999999999999983 338889999999999999999999
Q ss_pred CCeEEEEeCCCCceeeee-ecCCCc-eEEEEEeeCCCCeEEEE---cCCCeEEEEEcCCCce-EEEEEeccCcceeeecc
Q 014104 296 AGYASCWDLRTMKSLWET-RISPNV-VYSLQHLQNDTSTLVVG---GIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNK 369 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~-~~~~~~-v~~l~~~s~~~~~l~s~---~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s 369 (430)
|+.|++||+++++.+..+ ..|.+. +.++. |+|++.+|++| +.|+.|++||+.+++. +.....
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~----------- 264 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL----------- 264 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEE-ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-----------
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEE-EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-----------
Confidence 999999999999999888 688765 88888 99999999999 8999999999987654 332221
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeEEEEEecCCCc
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
.|...|.+++| ++++|+ +|+.||.|++|++.+++.
T Consensus 265 ------------------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 265 ------------------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ------------------------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ------------------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 23457888888 467775 566899999999998764
No 113
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.9e-29 Score=223.78 Aligned_cols=192 Identities=14% Similarity=0.221 Sum_probs=161.6
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCC--CeeeEEeecCCCCeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--eeEE
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ--RVAT 269 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~ 269 (430)
+++.+++..|++|+.|++|++||+.+ .+++..+.+|.++|.+++|++ +++|++|+.|++|++||+++++ .+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 44455556699999999999999974 467889999999999999974 4799999999999999999874 4556
Q ss_pred EecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEEeeCC-------------CCe
Q 014104 270 LRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQHLQND-------------TST 332 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~-------------~~~ 332 (430)
+.. |...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++ |+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE-ECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe-ecCCcccccccCCCCCCcce
Confidence 665 7889999999997 88999999999999999987632 356788999999999 9886 579
Q ss_pred EEEEcCCCeEEEEEcCCCc----eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---
Q 014104 333 LVVGGIDGVLRVLDQNTGE----VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--- 405 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--- 405 (430)
|++|+.|++|++||+++++ ....+ .+|...|++++|+
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l------------------------------------~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTL------------------------------------EGHSDWVRDVAWSPTV 216 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEE------------------------------------CCCSSCEEEEEECCCC
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEe------------------------------------cCCCCceEEEEECCCC
Confidence 9999999999999998766 23333 3467789999994
Q ss_pred --CeEEEEeeCCCeEEEEEecCC
Q 014104 406 --MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 406 --~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.+|++|+.|++|+|||+..+
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 378999999999999999764
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-29 Score=235.63 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=198.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---cc--ccCCCC-----------------------------------
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SV--FPSREG----------------------------------- 191 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~--~~~~~~----------------------------------- 191 (430)
..+.+++|+++|++|+++.++.|++||+.+++ .+ +..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 35677889999998888899999999998876 21 111100
Q ss_pred ------------------ceeeeeEEEEcCCce-EEEecCCeEEEEECC--CCeeeEEee--cCCCCeEEEEecCC-CEE
Q 014104 192 ------------------TFMKGLCMRYFDPEA-VVGCEDGTARVFDMY--SRKCSQIIR--MHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 192 ------------------~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~i~~~~~~~~-~~l 247 (430)
..+..+++.+++..| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+ .+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 164 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV 164 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEE
Confidence 023445556666665 889999999999999 888888876 56789999999986 799
Q ss_pred EEEeCCCeEEEEeCCCCceeE----EEecCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCceeee-eecCCCc
Q 014104 248 ISGSSLGSIAISGLSSDQRVA----TLRSTDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNV 319 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 319 (430)
++|+.+|.|++|++.+++... .+.+ |...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 999999999999998877543 5555 7889999999999 99999999999999999999988877 5689999
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
|.+++ |+ ++++|++++.|+.|++||+.+++++..+..+.....+......... .........+...|
T Consensus 244 v~~~~-~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 244 VSSIC-CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP-----------RFQNENNDIIEFAV 310 (450)
T ss_dssp EEEEE-EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------------------CBCCCE
T ss_pred eEEEE-EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc-----------cccccccccceEEE
Confidence 99999 88 9999999999999999999999999988754321000000000000 00000001233578
Q ss_pred eEEEE--cCeEEEEee-CCCeEEEEEe
Q 014104 400 TCLAV--GMKKVVTTH-NSKYIRLWKF 423 (430)
Q Consensus 400 ~~v~~--~~~~l~t~~-~Dg~v~vw~~ 423 (430)
.++++ ++++|++++ .|+.|++|++
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 88888 588999888 8999999999
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=5e-28 Score=227.59 Aligned_cols=280 Identities=14% Similarity=0.092 Sum_probs=218.5
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-----cC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-----LP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+..+..+. .+.+++| +++ ++++++.|+.|++||+.+++....+. .+ ..+..++|++++..++ ++.++.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 3455565554 4558888 445 77788889999999999998886433 33 3566789999998888 677899
Q ss_pred EEEEEcCCCcccccC-CCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|++||+++++..... ........+++.+.+..++ +++.|+.|++||+++++.+..+..+ ..+.+++|+|+ +.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEE
Confidence 999999987644322 1223344566776777664 5558999999999999988887754 56899999976 678887
Q ss_pred e--------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 251 S--------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 251 ~--------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
+ .|+.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 7 58899999999998877775 45589999999999755 566899999999999988887776 567789
Q ss_pred EEEEeeCCCCeEEEEcC---------------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 322 SLQHLQNDTSTLVVGGI---------------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
+++ ++|++++|++++. ||.|++||+.+++.+..+..+
T Consensus 349 ~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--------------------------- 400 (433)
T 3bws_A 349 TIA-LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--------------------------- 400 (433)
T ss_dssp EEE-ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---------------------------
T ss_pred eEE-EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---------------------------
Confidence 998 9999998888876 579999999999888877541
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEecC
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFNY 425 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~~ 425 (430)
..+.+++| ++++|++++ .|+.|++|+++.
T Consensus 401 ----------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 ----------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ----------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ----------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 25778888 577888776 499999999863
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.1e-28 Score=228.91 Aligned_cols=228 Identities=10% Similarity=0.029 Sum_probs=159.7
Q ss_pred ecCCCEEE-EEeCCeEEEEEcCCCcc----cccCCCCce--eeeeEEEE--------cCCceEEEecCCeEEEEECCCCe
Q 014104 160 DFDESKIV-GLIGTRICIWRRNGLRS----VFPSREGTF--MKGLCMRY--------FDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 160 ~~~~~~l~-~~~~~~i~vwd~~~~~~----~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
.+++..++ ++.|++|++||.++++. .+....+|. +..+++.+ ++..|++|+.|++|++||+.++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 34455677 88899999999988753 222233333 33455554 34569999999999999999988
Q ss_pred eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe------------------------cCCCCCe
Q 014104 225 CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR------------------------STDCTGI 278 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------~~~~~~v 278 (430)
++..+..|..+|.+++|+|+ .++++|+.|++|++||+++++...... ..|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 88888889999999999986 489999999999999999876543321 1255678
Q ss_pred EEEEEe-cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE------------------EeeC-CCCeEEEEcC
Q 014104 279 KTLCYN-PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ------------------HLQN-DTSTLVVGGI 338 (430)
Q Consensus 279 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~------------------~~s~-~~~~l~s~~~ 338 (430)
.++.|+ |+++.+++++.|+.+++||+..++....+..|...+..+. ++.+ ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 899987 7999999999999999999998776666655544443332 1222 3446788889
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
||.|++||+.+++++..+..|. .+|++++| ||++||++++||
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~------------------------------------~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLG------------------------------------MPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECS------------------------------------SCEEEEEECTTSSEEEEEESSE
T ss_pred CCEEEEEECCCCcEEEEecCCC------------------------------------CcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999998887776544 47889988 688999999876
Q ss_pred eEEEEEec
Q 014104 417 YIRLWKFN 424 (430)
Q Consensus 417 ~v~vw~~~ 424 (430)
+.+|++.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 5566654
No 117
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.4e-29 Score=225.35 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=161.2
Q ss_pred eEEEEeccccceeEEEec-C--C-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEEEEeCCeEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-R--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
.+..+.+|.+.|.+++|. + + +|+||+.|++|++||+.+++ ....+.+| ..+..++|+|++.
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------------ 116 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY------------ 116 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT------------
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC------------
Confidence 467899999999999993 2 4 99999999999999998864 44555544 4456677776521
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeecCCCCeEEEEecCC---------
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED--------- 244 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~~~~--------- 244 (430)
+..+++|+.||+|++||++++. ....+.+|...|.+++|+|+
T Consensus 117 --------------------------g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 117 --------------------------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp --------------------------CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred --------------------------CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 1226777777777777776542 13445567777888888764
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCCc
Q 014104 245 ---------QLIISGSSLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 245 ---------~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+|++|+.|++|++||++.+ +.+..+.+ |...|.+++|+|++ ++|++++.|++|++||+++..
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~-h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC-CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc-CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 58999999999999999765 35666766 88899999999986 899999999999999998631
Q ss_pred ----eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 ----SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ----~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
....+..|.+.|++++ |+|++++|++++.||.|++|+..
T Consensus 250 ~~~~~~~~~~~~~~~v~~v~-~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 250 SNTWSPKLLHKFNDVVWHVS-WSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCBCCEEEECSSCEEEEE-ECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccchhhhhhhcCCCcEEEEE-EcCCCCEEEEEcCCCeEEEEEEC
Confidence 2234567889999999 99999999999999999999986
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.1e-28 Score=224.68 Aligned_cols=242 Identities=12% Similarity=0.157 Sum_probs=197.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEE--ecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF--DFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~~~~i~vw 177 (430)
.....+.+|.+.|.+++| +++ +|++|+.||.|++||+.+++.+....+...+..++| ++++..++ ++.|+.|++|
T Consensus 77 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 344788999999999999 455 999999999999999999998887777778888999 88888888 8889999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe--ecCCCCeEEEEecCC-----CEEEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-----QLIISG 250 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~l~~~ 250 (430)
|+.+++.+....... ...++....+.+++++.++.+.+||+......... ..+...+.++.+.++ ..++++
T Consensus 157 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPE--RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSSCSEEEECSS--CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCcEEEEEecCC--CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999877543322222 35677777888999999999999999876433222 123345556665532 239999
Q ss_pred eCCCeEEEEeCCCC---ceeEEEecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 251 SSLGSIAISGLSSD---QRVATLRSTDCT------------GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 251 ~~dg~i~vwd~~~~---~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+.||.|++||++.. ..+..+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++..+..
T Consensus 235 ~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ETTSEEEEEESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cCCCcEEEEecCCCCccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 99999999999987 55667765 443 699999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
|...|.+++ |+|++++|++++.|+..+.|++-
T Consensus 314 ~~~~v~~~~-~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 LDQPISACC-FNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CSSCEEEEE-ECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCCceEEE-ECCCCCeEEEEeccccccccccc
Confidence 999999999 99999999999998866555543
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.5e-27 Score=209.28 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=132.3
Q ss_pred CCeEEEEEcCC-Cccc--ccCCCCceeeeeEEEE---cCCceEEEecCCeEEEEECCCCeeeEEeecCC---CCeEEEEe
Q 014104 171 GTRICIWRRNG-LRSV--FPSREGTFMKGLCMRY---FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC---APVTSLSL 241 (430)
Q Consensus 171 ~~~i~vwd~~~-~~~~--~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~ 241 (430)
|+.|++|++.. ++.+ ...+.. ...++++++ +++.|++++.|++|++||+.++++++++.+|. ..+.+++|
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 78888888843 4322 222322 234577777 45669999999999999999999999998654 36777889
Q ss_pred cCC-CEE------------EEEeCCCeEEEEeCCCCceeEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 242 SED-QLI------------ISGSSLGSIAISGLSSDQRVATLR----STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 242 ~~~-~~l------------~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+|+ .++ ++|+.|++|++||..+++.+..+. ..|...+.+..+ ++.++++|+.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC
Confidence 976 443 678899999999999999877652 235545544444 4889999999999999999
Q ss_pred CCCceeeeeecCCCceE-EEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 305 RTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 305 ~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.+++++.++.+|...+. +++ |+|||++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~gH~~~vvs~va-fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPPVSDQHWSFVK-WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECCC--CCCCEEE-ECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecCCCCCeEEEEE-ECCCCCEEEEEECCCcEEEecC
Confidence 99999999999987665 577 9999999999999999999995
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.7e-27 Score=215.32 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=171.0
Q ss_pred EeEEEEeccccceeEEEec---CC-eEEEEeCCCeEEEEecCCC---------eeEEeeecC-CceeEEEEecC--CCEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK---RG-LILTGVGDKVMRLWSLEGY---------KCVEEYSLP-NAASLVDFDFD--ESKI 166 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~---~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~-~~~~~~~~~~~--~~~l 166 (430)
..+..+.+|.+.|.+++|. ++ +|++|+.||.|++||+.++ +.+..+..+ ..+..++|+|+ +..+
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 3567788999999999994 35 9999999999999999886 445566554 45666777777 6665
Q ss_pred E-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC--
Q 014104 167 V-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-- 243 (430)
Q Consensus 167 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-- 243 (430)
+ ++.|+.|++||+.+++........ ..+.... .....|...+.+++|+|
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~---------------------~~~~~~~-------~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLT---------------------SEMKVLS-------IPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEE---------------------EEEESCS-------CCCSSCSCCCEEEEECCCS
T ss_pred EEecCCCcEEEecCCChHHhcccccc---------------------ccccccc-------cccCCcccceeEEEeccCC
Confidence 5 555555666655544322110000 0000000 01125778899999997
Q ss_pred --CCEEEEEeCCCeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCC--------
Q 014104 244 --DQLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTM-------- 307 (430)
Q Consensus 244 --~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~-------- 307 (430)
+..+++++.++.+.+|+...++. +..+.+ |...|++++|+|++ ++|++|+.||.|++||++++
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 47999999999999998887765 556665 88899999999998 89999999999999999874
Q ss_pred --------------------------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 308 --------------------------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 308 --------------------------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+.+..+.+|...|++++ |+|++++|++++.||.|++||+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS-WNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEE-ECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE-EcCCCCEEEEecCCCcEEEEecCc
Confidence 56677888999999999 999999999999999999999998
Q ss_pred CceEEEEEe
Q 014104 350 GEVLSRCVM 358 (430)
Q Consensus 350 ~~~~~~~~~ 358 (430)
++.+..+..
T Consensus 338 ~~~~~~~~~ 346 (351)
T 3f3f_A 338 SNEFKCMSV 346 (351)
T ss_dssp TSCEEEEEE
T ss_pred Ccchhheee
Confidence 876666543
No 121
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=219.09 Aligned_cols=192 Identities=14% Similarity=0.188 Sum_probs=161.1
Q ss_pred cCCceEEEecCCeEEEEECC--CCeeeEEeecCCCCeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--eeEEEecCC
Q 014104 202 FDPEAVVGCEDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ--RVATLRSTD 274 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~ 274 (430)
++..+++|+.||.|++||+. +++.+..+.+|.+.|++++|++ ++++++|+.||.|++||+.+++ .+..+.. |
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~ 100 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-H 100 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC-C
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC-C
Confidence 34447888889999999987 5567788889999999999973 4899999999999999999987 6666665 7
Q ss_pred CCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeC-------------CCCeEEEEc
Q 014104 275 CTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQN-------------DTSTLVVGG 337 (430)
Q Consensus 275 ~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~-------------~~~~l~s~~ 337 (430)
...|.+++|+|+ +++|++++.|+.|++||++++. ....+..|...|.+++ |+| ++.+|++++
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE-ECCCC----------CTTCEEEEEE
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE-EcCccccccccccCCCCCCEEEEEe
Confidence 889999999999 9999999999999999999873 3445678999999999 998 699999999
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c---CeEEEEe
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G---MKKVVTT 412 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~---~~~l~t~ 412 (430)
.||.|++||++++.....+... ..+|...|++++| + +++|+++
T Consensus 180 ~dg~i~i~d~~~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 180 ADNLVKIWKYNSDAQTYVLEST--------------------------------LEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TTSCEEEEEEETTTTEEEEEEE--------------------------------ECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CCCeEEEEEecCCCcceeeEEE--------------------------------EecccCcEeEEEECCCCCCCCeEEEE
Confidence 9999999999876543322210 1346778999999 4 7899999
Q ss_pred eCCCeEEEEEecCCC
Q 014104 413 HNSKYIRLWKFNYSD 427 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~~ 427 (430)
+.||.|++||+.+++
T Consensus 228 ~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ETTSCEEEEEESSTT
T ss_pred eCCCEEEEEeCCCCC
Confidence 999999999998764
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.9e-26 Score=218.20 Aligned_cols=302 Identities=10% Similarity=0.030 Sum_probs=226.8
Q ss_pred cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc--CCCcccccCCCCceeee
Q 014104 121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR--NGLRSVFPSREGTFMKG 196 (430)
Q Consensus 121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~--~~~~~~~~~~~~~~~~~ 196 (430)
+++ .+++++.|++|.+||..+++++.++..+..+..++|+|++++++ ++.++.|.+||+ .+++.+.....+.....
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~ 226 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 226 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcce
Confidence 455 78888999999999999999999998655577899999999998 888999999999 67664433334444556
Q ss_pred eEEEE----cCCceEEEe-cCCeEEEEECCCCeeeEEeec----------CCC-CeEEEEecCC--CEEEEEeCCCeEEE
Q 014104 197 LCMRY----FDPEAVVGC-EDGTARVFDMYSRKCSQIIRM----------HCA-PVTSLSLSED--QLIISGSSLGSIAI 258 (430)
Q Consensus 197 ~~~~~----~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~----------~~~-~i~~~~~~~~--~~l~~~~~dg~i~v 258 (430)
+++++ ++..+++++ .+++|.+||..+++++..+.. |.. .+..+.++++ .++++...++.|.+
T Consensus 227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 67777 777788877 489999999999999888764 223 7889999974 56777888999999
Q ss_pred EeCCCCceeE--EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCC-C
Q 014104 259 SGLSSDQRVA--TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQND-T 330 (430)
Q Consensus 259 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~-~ 330 (430)
||+.+.+.+. .+. +...+..+.|+|+|++++++ ..+++|.+||+.+++++..+.. |.+.... +++|+ +
T Consensus 307 vd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p~~g 382 (543)
T 1nir_A 307 VNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FVHPKYG 382 (543)
T ss_dssp EECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EEETTTE
T ss_pred EEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cCCCCCc
Confidence 9998876554 443 55678899999999987655 4588999999999998887774 5443333 25677 6
Q ss_pred CeEEEEc-CCCeEEEEEcCC-------CceEEEEEeccCcceeeeccCCce-----------------EEEeecccccCC
Q 014104 331 STLVVGG-IDGVLRVLDQNT-------GEVLSRCVMDIGSASSSSNKVSGV-----------------IERNEGRRLSAG 385 (430)
Q Consensus 331 ~~l~s~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~d~~-----------------v~~~~~~~~~~~ 385 (430)
..++++. .|++|.+||+.+ .++++++..+......+.+++||. |.+++.......
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 6667775 689999999998 899999998877666666666654 333333322211
Q ss_pred cccccC-------CCCCCCCeeEEEE--cCeEEEEe-----eCCCeEEEEEecCCCc
Q 014104 386 CCIDRI-------PKTIRPPITCLAV--GMKKVVTT-----HNSKYIRLWKFNYSDK 428 (430)
Q Consensus 386 ~~~~~~-------~~~h~~~v~~v~~--~~~~l~t~-----~~Dg~v~vw~~~~~~~ 428 (430)
. ..+ ...+...+..++| +|+.+..+ +.|+.|.|||.++++.
T Consensus 463 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 463 Y--QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp C--EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred e--EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 0 111 1245678889999 58776654 2589999999998763
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-27 Score=212.89 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=152.7
Q ss_pred ccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC
Q 014104 112 SVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 112 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
.+.|.++.+.+. +++|+.|++|++|+.... +.+|+..+++.+.....+
T Consensus 76 ~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 76 TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-------------------------------ITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EECCCTTCCCCS-EEEECSTTEEEEEETTTE-------------------------------EEEEETTTCCEEEEEECC
T ss_pred cCCceeeeeCCc-eEEecCCCeEEEEEccCc-------------------------------eEEeecCCcceeEEeecC
Confidence 356666777444 999999999999987641 222333333211111101
Q ss_pred --ceeeeeEEEE--cCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc
Q 014104 192 --TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 192 --~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~ 265 (430)
..+..+++.+ .+..+++++.||+|++||+++++.+.... .|...|.+++|+|+ .++++|+.||.|++||+++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1122333444 44558999999999999999998876664 34558999999986 899999999999999999999
Q ss_pred ee-EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec---CCCceE--EEEEeeCCCCeEEEEcC-
Q 014104 266 RV-ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI---SPNVVY--SLQHLQNDTSTLVVGGI- 338 (430)
Q Consensus 266 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~--~l~~~s~~~~~l~s~~~- 338 (430)
.+ ..+...|..+|++++|+|+|.+|++++. +.|++||+++++.+..+.. |...+. +++ |+|+|++|++++.
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD-IDDSGKNMIAYSNE 281 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEE-ECTTSSEEEEEETT
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEE-ECCCCCEEEEecCC
Confidence 87 7777657889999999999999999994 5999999999877655543 333333 587 9999999999988
Q ss_pred CCeEEEEEcCCCce
Q 014104 339 DGVLRVLDQNTGEV 352 (430)
Q Consensus 339 dg~i~vwd~~~~~~ 352 (430)
|+.|++|++..+..
T Consensus 282 d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 282 SNSLTIYKFDKKTK 295 (343)
T ss_dssp TTEEEEEEECTTTC
T ss_pred CCcEEEEEEccccc
Confidence 99999999976543
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.4e-27 Score=218.81 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=159.2
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEE-----eeecC-CceeEEEEec--------CCCEEE-EEeCCe
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVE-----EYSLP-NAASLVDFDF--------DESKIV-GLIGTR 173 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~-~~~~~~~~~~--------~~~~l~-~~~~~~ 173 (430)
|...+....++ ++ +|++|+.|++|++||..+++... .+.+| +.+..++|+| |++.|+ ++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 33333334443 33 89999999999999999886543 23444 5678899997 788888 889999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEE----------------------
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQI---------------------- 228 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---------------------- 228 (430)
|++||+.++... ...+... ...+++.+.++ .+++++.||+|++||+++++....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSP-GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EEEEECCCCceeeeecCCCCC-cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 999999876543 3334333 33456666554 499999999999999988764322
Q ss_pred ---eecCCCCeEEEEec-CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEE------------------EEec
Q 014104 229 ---IRMHCAPVTSLSLS-ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTL------------------CYNP 285 (430)
Q Consensus 229 ---~~~~~~~i~~~~~~-~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~------------------~~~~ 285 (430)
..+|...+.++.|. ++ ..+++++.|+++++||+.+++....+.. +...+..+ .++|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCccccEEEccccccccccCcceeEEEcc
Confidence 23567788899987 54 8999999999999999998776665544 33333322 3333
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 286 --CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 286 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
++.++++|+.||.|++||+.+++.+..+..|...|.+++ |+|+|++||+++.+| +.+|.+.
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva-fspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC-WHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE-ECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE-EcCCCCEEEEEeCCC-eEEEEEe
Confidence 334667888999999999999999888889999999999 999999999998766 6666543
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.7e-25 Score=210.33 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=195.5
Q ss_pred EeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~ 182 (430)
+.+|.+.|.+++++ ++ ++++++.|+.|++||+.+++.+..+..+ ..+..++|+++++.++ ++ .++.|++||+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 45788999999994 55 8899999999999999999998888765 4677799999999886 44 6899999999988
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEe--------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGC--------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSS 252 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~ 252 (430)
+.............+++.+.+..+++++ .||.|++||+.+++.+..+. |...+.+++|+|+ + ++++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETT
T ss_pred cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecC
Confidence 7654443344445566666677788877 48899999999998877663 5668899999976 4 5567789
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---------------CCeEEEEeCCCCceeeeeecCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---------------AGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
|+.|++||+.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+..+
T Consensus 324 ~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~- 400 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG- 400 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-
T ss_pred CCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-
Confidence 9999999999999888886 6678999999999999988876 579999999999988888764
Q ss_pred CceEEEEEeeCCCCeEEEEcC-CCeEEEEEcC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQN 348 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~ 348 (430)
..+.+++ |+|+|++|++++. |+.|++|+++
T Consensus 401 ~~~~~~~-~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 401 NQPTGLD-VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEE-ECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCCceEE-EcCCCCEEEEEECCCCeEEEEEec
Confidence 5789998 9999999988764 9999999986
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=9.5e-26 Score=211.77 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=168.8
Q ss_pred CEeEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCCee-------EEeeecC-CceeEEEEecCCCEEEEEe
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKC-------VEEYSLP-NAASLVDFDFDESKIVGLI 170 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~ 170 (430)
...+..+.+|.+.|.+++|+ ++ +|++|+.||.|++||+.++.. ...+..+ ..+..++|+|++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~------- 243 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH------- 243 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-------
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-------
Confidence 34567888999999999994 33 899999999999999987422 1222222 233334444421
Q ss_pred CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC--C
Q 014104 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED--Q 245 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~--~ 245 (430)
+..+++++.||.|++||++++ +.+..+..|...|++++|+|+ .
T Consensus 244 --------------------------------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 244 --------------------------------ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp --------------------------------TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred --------------------------------CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence 222788899999999999877 577788889999999999985 3
Q ss_pred EEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC--------------Cce
Q 014104 246 LIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT--------------MKS 309 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--------------~~~ 309 (430)
++++|+.||.|++||+++ ++.+..+.. |...|.+++|+|+++ +|++++.|+.|++||+.. .+.
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 799999999999999998 566778876 888999999999985 789999999999999987 356
Q ss_pred eeeeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCC
Q 014104 310 LWETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~ 350 (430)
+..+.+|...|.+++ |+|+++ +|++++.||.|++|++...
T Consensus 371 ~~~~~~h~~~v~~~~-~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 371 LFIHGGHTAKISDFS-WNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECCCCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEcCCCCCCceEEE-ECCCCCCEEEEEECCCCEEEeEcccc
Confidence 677888999999999 999999 8999999999999998743
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-26 Score=227.12 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=170.9
Q ss_pred EeEEEEeccccceeEEEe-cC--C-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecC--CCEEEEEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFD--ESKIVGLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~~ 173 (430)
..+..+.+|.++|++++| ++ + +|++|+.||.|++||+.+++ .+..+..+ ..+..++|+|+ +..
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~-------- 115 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-------- 115 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--------
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE--------
Confidence 456788999999999999 44 5 99999999999999999886 45555544 44555666665 433
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC--------
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE-------- 243 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~-------- 243 (430)
+++|+.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 116 --------------------------------l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 116 --------------------------------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp --------------------------------EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred --------------------------------EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 7888888889999887763 3456678999999999998
Q ss_pred ------CCEEEEEeCCCeEEEEeCCCC----ceeEEEecCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--
Q 014104 244 ------DQLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMK-- 308 (430)
Q Consensus 244 ------~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-- 308 (430)
+..+++|+.||.|++||++++ .....+.+ |...|++++|+|+ +++|++|+.||.|++||+++++
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 478999999999999999877 44556665 8889999999999 8999999999999999999864
Q ss_pred ---eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 309 ---SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 309 ---~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+.....|.+.|++++ |+|+++++++++.||.|++||+.++
T Consensus 243 ~~~~~~~~~~~~~~v~~l~-~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEE-ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ceeEEeccCCCCCceEEEE-EcCCCCEEEEEcCCCEEEEEecCCC
Confidence 3344556888999999 9999999999999999999999854
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4.7e-24 Score=198.90 Aligned_cols=272 Identities=10% Similarity=0.017 Sum_probs=195.9
Q ss_pred cccceeEEEe-cCC--eEEEEe----CCC----eEEEEec--CCCeeE--EeeecCC-ceeEEEEec-------------
Q 014104 111 HSVGVDQCRM-KRG--LILTGV----GDK----VMRLWSL--EGYKCV--EEYSLPN-AASLVDFDF------------- 161 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~~----~dg----~i~iwd~--~~~~~~--~~~~~~~-~~~~~~~~~------------- 161 (430)
+...+....| +.+ ++++|+ .|| +|++||+ .+++.+ ..+.++. .+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3346666666 444 777886 467 9999999 888877 3455542 233344443
Q ss_pred -CCCEEE-EEeC------CeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCC---eEEEEECCCCeeeEEe
Q 014104 162 -DESKIV-GLIG------TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDG---TARVFDMYSRKCSQII 229 (430)
Q Consensus 162 -~~~~l~-~~~~------~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~ 229 (430)
.+..++ ++.+ +.|++||+++... .+..+.. .....++++++..+++++.++ .|++||+.+++.. .+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 155555 5554 7999999986543 2333333 345567777888899998875 9999999998775 56
Q ss_pred ecCCCCeEEEEecCC-CEEE-EEeCCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEE
Q 014104 230 RMHCAPVTSLSLSED-QLII-SGSSLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCW 302 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~ 302 (430)
..|.+.+.+++|+|+ +.|+ +++.++ .|++||+.+++. ..+.. +...+.+++|+|+|+.|++++. ++ .|++|
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 678889999999987 6566 666665 499999998876 45554 6678999999999999988776 44 68888
Q ss_pred eCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeec
Q 014104 303 DLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEG 379 (430)
Q Consensus 303 d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~ 379 (430)
|+.+++. ..+..+...+.+++ |+|+|++|++++.+ ..|++||+.+++.. .+..
T Consensus 297 d~~~~~~-~~l~~~~~~~~~~~-~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~--------------------- 352 (415)
T 2hqs_A 297 NINGGAP-QRITWEGSQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS--------------------- 352 (415)
T ss_dssp ETTSSCC-EECCCSSSEEEEEE-ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC---------------------
T ss_pred ECCCCCE-EEEecCCCcccCeE-ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC---------------------
Confidence 9987764 34555667888898 99999999988764 68999999987763 2322
Q ss_pred ccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC---eEEEEEecCC
Q 014104 380 RRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK---YIRLWKFNYS 426 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg---~v~vw~~~~~ 426 (430)
| ..+.+++| ||++|++++.|+ .|.+||++.+
T Consensus 353 ---------------~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 353 ---------------T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ---------------S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ---------------C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 1 15666677 577787777766 7888887654
No 129
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.2e-23 Score=190.66 Aligned_cols=260 Identities=10% Similarity=0.003 Sum_probs=197.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCCCCc------
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSREGT------ 192 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~~------ 192 (430)
++++++.++.|.+||+.+++.+..+..+. .+..++++|+++.++ + ..++.|.+||+.+++.+.....+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 78999999999999999999999888765 577899999998776 3 346899999999877543221111
Q ss_pred eeeeeEEEEcCCceEEEe------------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 193 FMKGLCMRYFDPEAVVGC------------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
....+.+.+++..+++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+ +.++++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 233456666777777775 579999999999988877764 456788999976 666666 6899999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C-----------------------eEEEEeCCCCcee-eeee
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-G-----------------------YASCWDLRTMKSL-WETR 314 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~i~d~~~~~~~-~~~~ 314 (430)
|+.+++....+..... ...+.|+|+++.++..+.. + .|.+||+.+++.. ..+.
T Consensus 160 d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp ETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred ECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 9999998887765221 1123789999876654432 2 4789999988764 2344
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCC
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKT 394 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~ 394 (430)
.+...+.+++ ++|++++++++ ++.|++||+.+++.+..+..+
T Consensus 238 ~~~~~~~~~~-~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------------------------------- 279 (337)
T 1pby_B 238 IMDVFYFSTA-VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP----------------------------------- 279 (337)
T ss_dssp ECSSCEEEEE-ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-----------------------------------
T ss_pred CCCCceeeEE-ECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-----------------------------------
Confidence 5556788898 99999999888 799999999999888776532
Q ss_pred CCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 395 IRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 395 h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+++| ++++|++++.|+.|++||+.+++.
T Consensus 280 --~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 280 --HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp --SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred --CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 13456677 577888888999999999988763
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-23 Score=195.41 Aligned_cols=257 Identities=12% Similarity=0.040 Sum_probs=189.4
Q ss_pred EEEeccccceeEEEec----------------CCeEEEEeCC------CeEEEEecCCCeeEEeee-cCCceeEEEEecC
Q 014104 106 DQWKAHSVGVDQCRMK----------------RGLILTGVGD------KVMRLWSLEGYKCVEEYS-LPNAASLVDFDFD 162 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~----------------~~~l~s~~~d------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 162 (430)
..+.+|...+..+++. ++.++.++.+ +.|++||+.++. ...+. +...+..++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC
Confidence 4588888888877663 4466666654 799999998644 44444 4467788999999
Q ss_pred CCEEE-EEeCC---eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCe--EEEEECCCCeeeEEeecCCCC
Q 014104 163 ESKIV-GLIGT---RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGT--ARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 163 ~~~l~-~~~~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~ 235 (430)
++.|+ ++.++ .|++||+++++..............++++++..|+ +++.++. |++||+.+++. ..+..|...
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 99999 66664 89999999887532222222345567777777766 6666554 99999988776 567778889
Q ss_pred eEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCc
Q 014104 236 VTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMK 308 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~ 308 (430)
+.+++|+|+ +.|++++. ++ .|.+||+.+++.. .+.. +...+.+++|+|+|++|++++.+ ..|++||+.+++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 999999987 67777775 44 7888899887643 3433 55688999999999999987764 589999999887
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceEEEEEeccCcceeeeccC
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~ 370 (430)
.. .+..+. .+.+++ |+|+|++|++++.++ .|++||+. +.....+..+.+.+...++++
T Consensus 347 ~~-~l~~~~-~~~~~~-~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPS-LAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EE-ECCCSS-SCEEEE-ECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred EE-EecCCC-CcCCeE-EcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 64 455554 788998 999999999888776 89999987 566677766555443333333
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3.9e-22 Score=180.39 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=191.6
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCcc-cccCCCCceeee-eEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLRS-VFPSREGTFMKG-LCM 199 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~~-~~~~~~~~~~~~-~~~ 199 (430)
.+++++.++.|.+||..+++.+..+..+.....++|+|+++.++ ++. ++.|.+||+++++. ......+..... +++
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI 91 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence 67888899999999999999988887654444899999999776 444 78999999998774 322222222233 667
Q ss_pred EEcCCceEEEecCC---eEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCe-EEEEeCCCCcee-----E
Q 014104 200 RYFDPEAVVGCEDG---TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGS-IAISGLSSDQRV-----A 268 (430)
Q Consensus 200 ~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~-i~vwd~~~~~~~-----~ 268 (430)
.+++..++++..++ .|.+||+.+++.+..+.. .....+++|+|+ + ++++...++. |.+|++.....+ .
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 77777777555553 999999999998888764 445689999986 4 4555566678 999998754433 2
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCce---eeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKS---LWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLR 343 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~ 343 (430)
.+. ....+..++|+|+|++++++ ..++.|.+||+.+++. +..+..+ ..+..++ |+|+|++|++++ .++.|.
T Consensus 171 ~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~-~spdg~~l~v~~~~~~~i~ 246 (331)
T 3u4y_A 171 FIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV-VSRDGSTVYVLTESTVDVF 246 (331)
T ss_dssp EEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE-ECTTSSEEEEECSSEEEEE
T ss_pred ccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE-ECCCCCEEEEEEcCCCEEE
Confidence 222 34568999999999966554 4689999999999888 7666654 5677888 999999776655 578899
Q ss_pred EEEcCCCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeE
Q 014104 344 VLDQNTGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYI 418 (430)
Q Consensus 344 vwd~~~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v 418 (430)
+||+.+++. +..+..+.. ..........+++| |+++|+ ++..++.|
T Consensus 247 ~~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 247 NFNQLSGTLSFVKSFGHGLL-----------------------------IDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp EEETTTTEEEEEEEEECCCC-----------------------------CCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred EEECCCCceeeecccccccc-----------------------------cCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 999998876 443332100 00000011244566 677764 55567799
Q ss_pred EEEEecCC
Q 014104 419 RLWKFNYS 426 (430)
Q Consensus 419 ~vw~~~~~ 426 (430)
.+||+...
T Consensus 298 ~v~d~~~~ 305 (331)
T 3u4y_A 298 KVFTISGK 305 (331)
T ss_dssp EEEETTSC
T ss_pred EEEEecCC
Confidence 99999764
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.5e-21 Score=178.11 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=190.7
Q ss_pred cccceeEEEe-cCC-eEEEEeC-------CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVG-------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRR 179 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~ 179 (430)
....+..+++ +++ ++++++. ++.|.+||..+++.+..+........++++++++.++ + ..++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456778888 455 6666663 5689999999999999888777777899999999766 3 44689999999
Q ss_pred CCCccccc--CCCCc--------eeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CE
Q 014104 180 NGLRSVFP--SREGT--------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 180 ~~~~~~~~--~~~~~--------~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 246 (430)
++++.... ..... ....+.+.+++..+++++ .++.|.+||..+++.+..+..+...+..++|+|+ +.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 98874322 21111 134466777777766665 4789999999999998888756666889999976 78
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+++++.++.|.+||+.+++.+..+... +...+..++|+|+|+++++++. ++.|.+||..+++.+..+..... ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 888889999999999999988877641 3446788999999998776665 48999999999998887775432 56
Q ss_pred EEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEe
Q 014104 323 LQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 323 l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++ ++|+++++++++ .++.|.+||+.+++.+..+..
T Consensus 277 ~~-~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 277 VL-FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EE-EETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EE-ECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 77 999999665554 789999999999998887764
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=7.9e-22 Score=189.52 Aligned_cols=268 Identities=13% Similarity=0.044 Sum_probs=200.0
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEec--CCCeeEEeeecCCceeEEEEec----CCCEEE-EE-eCCe
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSL--EGYKCVEEYSLPNAASLVDFDF----DESKIV-GL-IGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~----~~~~l~-~~-~~~~ 173 (430)
.+.++..+.. +.+++| +++ +|++++.|++|++||+ .+++.+.++........++|+| ++++++ ++ .+++
T Consensus 171 ~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 171 IVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 4666763333 888888 566 9999999999999999 8899999998777788899999 999988 44 4899
Q ss_pred EEEEEcCCCcccccCC------------CCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeE--EeecCCCCeEE
Q 014104 174 ICIWRRNGLRSVFPSR------------EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTS 238 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~ 238 (430)
|.+||..+.+.+.... .......+.++++++. +++...++.|.+||..+.+.+. .+. +...+..
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~ 328 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD 328 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC
Confidence 9999998876432211 1112233444444555 6777889999999998876544 443 5667889
Q ss_pred EEecCC-CEEEE-EeCCCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecC-CCEEEEEe-CCCeEEEEeCCC-----
Q 014104 239 LSLSED-QLIIS-GSSLGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPC-SRLVFAGT-TAGYASCWDLRT----- 306 (430)
Q Consensus 239 ~~~~~~-~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~----- 306 (430)
+.|+|+ +++++ +..+++|.+||..+++++..+... |.+....+ ++|+ |..++++. .|++|.+||+.+
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 999986 65554 456899999999999998888742 43333333 5777 56666665 579999999998
Q ss_pred --CceeeeeecCCCceEEEEEeeCCCCeEEEEc-------CCCeEEEEEcCCCceE-EEEE--------eccCcceeeec
Q 014104 307 --MKSLWETRISPNVVYSLQHLQNDTSTLVVGG-------IDGVLRVLDQNTGEVL-SRCV--------MDIGSASSSSN 368 (430)
Q Consensus 307 --~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-------~dg~i~vwd~~~~~~~-~~~~--------~~~~~~~~~~~ 368 (430)
.+.+.++..|.+.+..+. ++|++++|++++ .+++|.+||+.+++.. ..+. .+...+..+.+
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~-~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIK-THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEE-CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred hcCeEEEEEEcCCCCceEEE-cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 889999999988888898 999999999987 2679999999999877 4442 22344455566
Q ss_pred cCCceEE
Q 014104 369 KVSGVIE 375 (430)
Q Consensus 369 s~d~~v~ 375 (430)
++||...
T Consensus 487 ~~~g~~~ 493 (543)
T 1nir_A 487 NKRGDEV 493 (543)
T ss_dssp CSSSSEE
T ss_pred CCCCCEE
Confidence 6666543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=9.8e-22 Score=178.39 Aligned_cols=262 Identities=11% Similarity=0.154 Sum_probs=177.6
Q ss_pred eEEEEeCCCeEEEEecC-CC--eeEEeeecCCceeEEEEecCCCEEE-EEeC-CeEEEEEcC--CCcc--cccCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLE-GY--KCVEEYSLPNAASLVDFDFDESKIV-GLIG-TRICIWRRN--GLRS--VFPSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~i~vwd~~--~~~~--~~~~~~~~~~ 194 (430)
.+++++.|+.|++||+. ++ +.+..+.....+..++|+|+++.++ ++.+ +.|.+|+++ ++.. +.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 44455789999999985 33 4455566666778899999999888 5554 899999998 4442 1111111233
Q ss_pred eeeEEEEcCCceEEEe-cCCeEEEEECC---CCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCC-Ccee
Q 014104 195 KGLCMRYFDPEAVVGC-EDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS-DQRV 267 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~-~dg~i~vwd~~---~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~-~~~~ 267 (430)
..+++.+++..+++++ .++.|.+||+. +.+.+..+.. ...+.+++|+|+ +.+++++ .++.|.+||+.+ ++..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 4566667777676665 48899999994 4445555543 345889999986 6666666 899999999987 6543
Q ss_pred E----EEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCC--Cce--eeeee---cC---CCceEEEEEeeCCCCe
Q 014104 268 A----TLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRT--MKS--LWETR---IS---PNVVYSLQHLQNDTST 332 (430)
Q Consensus 268 ~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~---~~---~~~v~~l~~~s~~~~~ 332 (430)
. .+.......+..++|+|+++++++++ .++.|.+||+.. ++. ...+. .. ...+..++ |+|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH-ITPDGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE-ECTTSSE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE-ECCCCCE
Confidence 2 23332345788999999999776554 789999999953 332 22222 11 23466788 9999988
Q ss_pred EE-EEcCCCeEEEEEcC--CCc--eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 333 LV-VGGIDGVLRVLDQN--TGE--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 333 l~-s~~~dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|+ ++..++.|.+||+. ++. .+..+..+ ..+.+++| +
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~d 287 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTE-------------------------------------TQPRGFNVDHS 287 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECS-------------------------------------SSCCCEEECTT
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCC-------------------------------------CccceEEECCC
Confidence 77 55579999999998 332 23323211 12556667 5
Q ss_pred CeEEEEee-CCCeEEEEEec
Q 014104 406 MKKVVTTH-NSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~-~Dg~v~vw~~~ 424 (430)
+++|++++ .|+.|.+|+++
T Consensus 288 g~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEEEc
Confidence 77676666 68999999765
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.4e-22 Score=201.85 Aligned_cols=243 Identities=9% Similarity=-0.030 Sum_probs=181.3
Q ss_pred ccceeEEEe-cCC-eEEEEeC-CC-----eEEEEecCCCeeEEeeecCC-------------------------ceeEEE
Q 014104 112 SVGVDQCRM-KRG-LILTGVG-DK-----VMRLWSLEGYKCVEEYSLPN-------------------------AASLVD 158 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~ 158 (430)
...+.+++| +|| +|++++. |+ .|++||+.+++....+..+. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456889999 566 8999988 88 99999999988776665431 246689
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCC---cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (430)
|+|||+.|+.+.++.|.+||+.++ +...............+++++..|+.++ ++.|++||+.+++.......+...
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 999999999666699999999987 4322222223345577888888888877 469999999988776555444332
Q ss_pred ----------------eEEEEecCC-CEEEEEeCCC---------------------------------eEEEEeCCC-C
Q 014104 236 ----------------VTSLSLSED-QLIISGSSLG---------------------------------SIAISGLSS-D 264 (430)
Q Consensus 236 ----------------i~~~~~~~~-~~l~~~~~dg---------------------------------~i~vwd~~~-~ 264 (430)
+..++|+|+ +.|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 477999987 7788877665 899999988 7
Q ss_pred ceeEEEec-CCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEeCCCCceeeeeecCCC----ceEEEEEeeCCCCeEE
Q 014104 265 QRVATLRS-TDCTGIKTLCYNPCSRLVFAGTT-----AGYASCWDLRTMKSLWETRISPN----VVYSLQHLQNDTSTLV 334 (430)
Q Consensus 265 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~s~~~~~l~ 334 (430)
+....... .+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++ |+|||++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~ 352 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR-FLDDGSILW 352 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE-ECTTSCEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE-ECCCCeEEE
Confidence 76544322 25568999999 99999987654 56799999999887766665543 345777 999999999
Q ss_pred EEcCCCeEEEEEcC-CCceEEEEEe
Q 014104 335 VGGIDGVLRVLDQN-TGEVLSRCVM 358 (430)
Q Consensus 335 s~~~dg~i~vwd~~-~~~~~~~~~~ 358 (430)
+++.||.++||.++ ++. ...+..
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCC
T ss_pred EecCCCccEEEEEcCCCC-eeeeee
Confidence 99999988888765 344 444433
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.2e-21 Score=203.63 Aligned_cols=263 Identities=10% Similarity=0.007 Sum_probs=206.1
Q ss_pred eEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCC-CeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
....+.+|.+.+.++.|+++ ++++++.|+.+++|.+.. +.....+..+......+|+|+|+.++...++.|.+|+++.
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~ 274 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDT 274 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTT
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCc
Confidence 44566899999999999655 667788889999998653 3444555555556678999999999966899999999954
Q ss_pred CcccccCCCC------------ceeeeeEEE-EcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeEEEEecCC-CE
Q 014104 182 LRSVFPSREG------------TFMKGLCMR-YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTSLSLSED-QL 246 (430)
Q Consensus 182 ~~~~~~~~~~------------~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~~~~-~~ 246 (430)
.... ..... .....+.++ +++..+++++ ++.|.+|++.+++.. .+..|.. .+..++|+ + +.
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCe
Confidence 4322 11111 124457788 8888788877 789999999877654 4566777 89999999 6 67
Q ss_pred EEEEeCCCeEE-EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 247 IISGSSLGSIA-ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 247 l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
++.++.++.+. +||+.+++.. .+.. +...+..++|+|+|++|++++.++.|++||+.+++.......|.+.+.+++
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~- 427 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT- 427 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE-
T ss_pred EEEEECCCceEEEEECCCCCce-EecC-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceE-
Confidence 88888888898 9999877654 4443 777899999999999999999999999999999988877778888899998
Q ss_pred eeCCCCeEEEEcCCC----------eEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 326 LQNDTSTLVVGGIDG----------VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
|+|||++|++++.++ .|++||+.+++ +..+..+......+++++||..
T Consensus 428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred ECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence 999999998887654 89999999877 6666666666666778888864
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1e-21 Score=174.20 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred EEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC-Ccccc--cCCCCceeeeeEEEEcC
Q 014104 127 TGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG-LRSVF--PSREGTFMKGLCMRYFD 203 (430)
Q Consensus 127 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~-~~~~~--~~~~~~~~~~~~~~~~~ 203 (430)
+++.|++|++||+.+++..........+..++|+|++++|+.+.++.|.+||+++ ++... ..+.......+.+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4567899999999999888767666778899999999999977799999999998 65432 22222344557788888
Q ss_pred CceEEEec--C--CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCC--CCceeEEEecCCC
Q 014104 204 PEAVVGCE--D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLS--SDQRVATLRSTDC 275 (430)
Q Consensus 204 ~~l~~~~~--d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~--~~~~~~~~~~~~~ 275 (430)
..+++++. + ..|..++..+++ ...+..+ ..+..++|+|+ +.++ +++.++.+.+|++. +++ ...+.. +.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH-GE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC-SS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc-CC
Confidence 88888883 3 455555655554 3444433 35889999976 5555 78889999999853 343 344443 66
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC-----------CeE
Q 014104 276 TGIKTLCYNPCSRLVFAGT-TAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID-----------GVL 342 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----------g~i 342 (430)
..+.+++|+|+|+.|+.++ .++.+.+|++. .+..+..+..|...+..+. |+|++++|++++.+ +.|
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH-PSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEE-ECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeE-ECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 7899999999999888665 58889999886 4566677777878888998 99999999888765 569
Q ss_pred EEEEcCCCceEE
Q 014104 343 RVLDQNTGEVLS 354 (430)
Q Consensus 343 ~vwd~~~~~~~~ 354 (430)
++||+.+++...
T Consensus 252 ~~~d~~~~~~~~ 263 (297)
T 2ojh_A 252 QLMDMDGGNVET 263 (297)
T ss_dssp EEEETTSCSCEE
T ss_pred EEEecCCCCcee
Confidence 999999876533
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=2e-21 Score=194.12 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=176.5
Q ss_pred cceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC-----Ccccc
Q 014104 113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG-----LRSVF 186 (430)
Q Consensus 113 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~-----~~~~~ 186 (430)
..|.+++|+ ++.++.+ .++.|++||+.+++..........+..++|+|||+.|+...++.|.+||+.+ ++...
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 468999994 5555544 4599999999998877665555667779999999999977899999999998 65432
Q ss_pred --cCCCCce-------------eeeeEEEEcCCceEEEe---------------------------------cCCeEEEE
Q 014104 187 --PSREGTF-------------MKGLCMRYFDPEAVVGC---------------------------------EDGTARVF 218 (430)
Q Consensus 187 --~~~~~~~-------------~~~~~~~~~~~~l~~~~---------------------------------~dg~i~vw 218 (430)
....... ...+.+++++..|++++ .+..|.+|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 2222211 35677888888888887 45789999
Q ss_pred ECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCC-----eEEEEeCCCCceeEEEe-cCCCC---CeEEEEEec-
Q 014104 219 DMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLG-----SIAISGLSSDQRVATLR-STDCT---GIKTLCYNP- 285 (430)
Q Consensus 219 d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-~~~~~---~v~~~~~~~- 285 (430)
|+.+++...... .|...+.+++|+|+ +.+++++.++ .|.+||+.+++....+. ..+.. .+..++|+|
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~ 320 (706)
T 2z3z_A 241 HLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG 320 (706)
T ss_dssp ETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence 999887654442 46678999999987 6788877665 99999999984433332 21222 346789999
Q ss_pred -CCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEE-EEEeeCCCCeEEEEcC-CC----eEEEEEcCCCc
Q 014104 286 -CSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYS-LQHLQNDTSTLVVGGI-DG----VLRVLDQNTGE 351 (430)
Q Consensus 286 -~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-l~~~s~~~~~l~s~~~-dg----~i~vwd~~~~~ 351 (430)
+|++++++..|+.+++|++. +++.+..+..+...+.. ++ |+|+++.|+.++. ++ .|..||+.+++
T Consensus 321 ~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 321 SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAG-FDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEE-ECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeE-EcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 99999999999999999876 56777778777777877 56 9999998765554 44 67777777655
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.3e-21 Score=203.44 Aligned_cols=309 Identities=13% Similarity=0.080 Sum_probs=218.0
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC------------ceeEEEEe-cCCCEEEEEe
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN------------AASLVDFD-FDESKIVGLI 170 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~l~~~~ 170 (430)
..+.+|. .+...+| ++| +|+++ .++.|.+||+...+. ..+..+. .+..++|+ |||+.++...
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 3444554 3556677 566 67776 589999999955443 3444322 46779999 9999999666
Q ss_pred CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEE-EEECCCCeeeEEeecCCCCeEEEEecCC-CEE
Q 014104 171 GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTAR-VFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
++.+.+|++.++.... ..+.........+. ++..+++++.++.+. +||+.+++... +.+|...+..++|+|+ +.+
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEE
T ss_pred cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEE
Confidence 9999999998776432 22222133334445 555588888888898 99998776543 4478889999999987 889
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC----------eEEEEeCCCCceeeeeecCC
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG----------YASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~ 317 (430)
++++.++.|++||+.+++....+.. +...+.+++|+|+|++|++++.++ .|++||+.+++ +..+..|.
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred EEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 9999999999999999988777755 777899999999999998877654 89999999877 66777788
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-------------------------------------------EE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-------------------------------------------LS 354 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~ 354 (430)
..+..++ |+|+|++|++++.++...+|+...... +.
T Consensus 472 ~~~~~~~-~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 550 (1045)
T 1k32_A 472 SHDYAPA-FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 550 (1045)
T ss_dssp SBEEEEE-ECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred cccCCce-EcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceE
Confidence 8888998 999999999999888777776543221 11
Q ss_pred EEEeccCcceeeeccCCceEEEe------------------ecccccCC-cccccCCCCCCCCeeEEEE--cCeEEEEee
Q 014104 355 RCVMDIGSASSSSNKVSGVIERN------------------EGRRLSAG-CCIDRIPKTIRPPITCLAV--GMKKVVTTH 413 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~------------------~~~~~~~~-~~~~~~~~~h~~~v~~v~~--~~~~l~t~~ 413 (430)
.+..+...+..+++++||.+... ..+.+... .....+. ..+.++++ ||++|++++
T Consensus 551 ~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 551 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEE
T ss_pred EcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEc
Confidence 12222233345667777765442 01111100 0011111 34667777 699999988
Q ss_pred CCCeEEEEEecCCC
Q 014104 414 NSKYIRLWKFNYSD 427 (430)
Q Consensus 414 ~Dg~v~vw~~~~~~ 427 (430)
.| .|++||+.+++
T Consensus 627 ~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 627 DD-GKIYTFPLEKP 639 (1045)
T ss_dssp TT-SCEEEEESSCT
T ss_pred CC-cEEEEeCccCc
Confidence 77 79999998876
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.6e-20 Score=169.87 Aligned_cols=252 Identities=13% Similarity=0.027 Sum_probs=184.6
Q ss_pred EeEEEEec-ccc-ceeEEEe-cCC-e-EEEEeCCCeEEEEecCCCeeEEeeecCC------ceeEEEEecCCCEEEEE--
Q 014104 103 IDIDQWKA-HSV-GVDQCRM-KRG-L-ILTGVGDKVMRLWSLEGYKCVEEYSLPN------AASLVDFDFDESKIVGL-- 169 (430)
Q Consensus 103 ~~~~~l~~-h~~-~v~~~~~-~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-- 169 (430)
..+..+.. +.. .+..+++ +++ + +++++.++.|.+||+.+++.+..+.... .+..++|+++++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence 44555552 322 4788888 566 4 4566668999999999999888777543 56679999999988843
Q ss_pred -----------eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE
Q 014104 170 -----------IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (430)
Q Consensus 170 -----------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 238 (430)
.++.|.+||+++++.......+.....+.+.+++..++++ ++.|.+||+.+++.+..+..+... ..
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~ 178 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AE 178 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TT
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CC
Confidence 4799999999987654332223333456677777777777 688999999999888777644311 12
Q ss_pred EEecCC-CEEEEEe-CCC-----------------------eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 239 LSLSED-QLIISGS-SLG-----------------------SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 239 ~~~~~~-~~l~~~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
+.|+|+ ..++..+ .++ .|.+||+.+++....-...+...+.+++|+|+|++++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 256665 3333322 222 478999999887522122255578899999999999988
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 294 TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
++.|.+||+.+++.+..+..+ ..+.+++ |+|+|++|++++.++.|++||+.+++.+..+..+..
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~-~~~~~~~-~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLP-HSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECS-SCCCEEE-ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred --CCeEEEEECCCCcCcceecCC-CceeeEE-ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 689999999999888777644 4678888 999999999999999999999999999998876543
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=4e-20 Score=168.53 Aligned_cols=209 Identities=9% Similarity=0.063 Sum_probs=162.7
Q ss_pred eecCCceeEEEEecCCCEEEEEe--------CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEE
Q 014104 148 YSLPNAASLVDFDFDESKIVGLI--------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVF 218 (430)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~--------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vw 218 (430)
.........++++++++.++.+. ++.|.+||..+++.......+.....+.+.+++..+ ++...++.|.+|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 33345667799999999888333 668999999988754333323334457777787764 455567999999
Q ss_pred ECCCCeeeEEeecCCCC---------eEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC
Q 014104 219 DMYSRKCSQIIRMHCAP---------VTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC 286 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~---------i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 286 (430)
|..+++.+..+..+... +.+++++|+ +.+++++ .++.|.+||..+++.+..+.. +...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCC
Confidence 99999988888765432 688999976 6565554 578999999999999888874 4446889999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCCCCeEEEEcC-CCeEEEEEcCCCceEEEEEe
Q 014104 287 SRLVFAGTTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 287 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 358 (430)
|+++++++.++.|.+||+.+++.+..+.. +...+.+++ ++|+++++++++. ++.|.+||+.+++.+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS-LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE-EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999999999988877664 445677888 9999997766654 59999999999998887764
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.7e-21 Score=193.16 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=169.8
Q ss_pred cccCCEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCee--EEeeecC-----------------CceeEEE
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC--VEEYSLP-----------------NAASLVD 158 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-----------------~~~~~~~ 158 (430)
+.+|+..-..|..+. +..+.|.++.+++++.|+ | +||+.+++. ...+... ..+..++
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 88 (706)
T 2z3z_A 13 LMPGGKEFYNFYPEY--VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL 88 (706)
T ss_dssp -----------------CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE
T ss_pred ccCCccccccccccc--CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE
Confidence 345555555666553 444555555777777788 8 999999887 3333322 3477799
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC-----CeeeEEeecCC
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-----RKCSQIIRMHC 233 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~ 233 (430)
|+|| +.++.+.++.+.+||+.+++...............+++++..++++ .++.|++||+.+ ++.......+.
T Consensus 89 ~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 89 DAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp ETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred ECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 9999 7888667899999999988643322222334557788888888874 689999999988 77665444333
Q ss_pred CC--------------eEEEEecCC-CEEEEEe---------------------------------CCCeEEEEeCCCCc
Q 014104 234 AP--------------VTSLSLSED-QLIISGS---------------------------------SLGSIAISGLSSDQ 265 (430)
Q Consensus 234 ~~--------------i~~~~~~~~-~~l~~~~---------------------------------~dg~i~vwd~~~~~ 265 (430)
.. +.++.|+|+ +.|++++ .+..|.+||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 32 478999987 7888876 44789999999887
Q ss_pred eeEEEec-CCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeeeee--cCCC---ceEEEEEeeC--CCCe
Q 014104 266 RVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWETR--ISPN---VVYSLQHLQN--DTST 332 (430)
Q Consensus 266 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~v~~l~~~s~--~~~~ 332 (430)
....... .+...+.+++|+|+|+.|++++.++ .|++||+.+++....+. .+.. .+.++. |+| +|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~sp~~dg~~ 325 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT-FLPGSNNQF 325 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE-ECTTCSSEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce-eecCCCCEE
Confidence 6544432 2556799999999999999887765 89999999884333332 2222 235677 999 9999
Q ss_pred EEEEcCCCeEEEEEcC-CCceEEEEEecc
Q 014104 333 LVVGGIDGVLRVLDQN-TGEVLSRCVMDI 360 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~-~~~~~~~~~~~~ 360 (430)
+++++.||.+++|+++ ++..+..+..+.
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 9999999999999886 566666665443
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.1e-19 Score=164.71 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=170.5
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCC-CeEEEEecC--CCe--eEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEE
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGD-KVMRLWSLE--GYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWR 178 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd 178 (430)
...|...+.+++| +++ +|++++.+ +.|.+|++. +++ .+..+..+..+..++|+|+++.++ ++. ++.|.+||
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3457788899999 566 78888876 999999997 554 445566556777899999999887 443 78899999
Q ss_pred cCCC---cccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCC-CeeeE----Eeec-CCCCeEEEEecCC-CEE
Q 014104 179 RNGL---RSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQ----IIRM-HCAPVTSLSLSED-QLI 247 (430)
Q Consensus 179 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~~~~-~~l 247 (430)
+..+ +.............+++.+++..+++++ .++.|.+||+.+ ++... .+.. ....+..++|+|+ +++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 9422 2222222223345567777777777776 899999999987 64432 2232 2347889999986 555
Q ss_pred E-EEeCCCeEEEEeCCC--Cce--eEEEec---CC--CCCeEEEEEecCCCEEEE-EeCCCeEEEEeCC--C--Cceeee
Q 014104 248 I-SGSSLGSIAISGLSS--DQR--VATLRS---TD--CTGIKTLCYNPCSRLVFA-GTTAGYASCWDLR--T--MKSLWE 312 (430)
Q Consensus 248 ~-~~~~dg~i~vwd~~~--~~~--~~~~~~---~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~--~~~~~~ 312 (430)
+ ++..++.|.+||+.. ++. ...+.. .+ ...+..++|+|+|++|++ +..++.|.+||+. + .+.+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 4 445889999999953 433 223321 11 235678999999998874 4478999999998 2 344555
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCce
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEV 352 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~ 352 (430)
+..+.. +..++ |+|+|++|++++ .++.|.+|++ .+++.
T Consensus 273 ~~~~~~-~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 273 QPTETQ-PRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EECSSS-CCCEE-ECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ecCCCc-cceEE-ECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 555544 88888 999999888887 6899999954 45643
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=1.2e-20 Score=171.67 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=179.4
Q ss_pred EEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCCCC
Q 014104 118 CRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 118 ~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
++++ ++ ++++++.+++|.+||+.+++.+..+..+. ....++++|+++.++ + ..++.|.+||+.+++........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4453 44 88899999999999999999998888766 677899999998766 3 35789999999988754322211
Q ss_pred -------ceeeeeEEEEcCCceEEEecC------------CeEEEEECCCCee---eEEeecCCCCeEEEEecCCCEEEE
Q 014104 192 -------TFMKGLCMRYFDPEAVVGCED------------GTARVFDMYSRKC---SQIIRMHCAPVTSLSLSEDQLIIS 249 (430)
Q Consensus 192 -------~~~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~ 249 (430)
.....+.+.+++..+++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+..+++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEE
Confidence 113446677777788888765 8999999988543 33444 344688999998733555
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCC-------------------------------------------------------
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTD------------------------------------------------------- 274 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------------------------------- 274 (430)
++. .|.+||+.+++.+..+....
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 49999999988877765321
Q ss_pred ------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 275 ------------CTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 275 ------------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
...+..++|+| +|++++++ ++.|.+||+.+++.+..+... ..+.+++ ++|++++|++++.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~-~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVA-FDKKGDKLYLGGTFND 317 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEE-ECSSSSCEEEESBSSE
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceE-ECCCCCEEEEecCCCe
Confidence 01345677789 99999888 889999999999888777643 4567888 9999999999989999
Q ss_pred EEEEEcCCCceEEEEEec
Q 014104 342 LRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~ 359 (430)
|++||+.+++.+..+...
T Consensus 318 v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 318 LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEETTTTEEEEEEECS
T ss_pred EEEEeccccceeeeeecC
Confidence 999999999999988765
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=4.1e-20 Score=167.07 Aligned_cols=245 Identities=10% Similarity=0.010 Sum_probs=175.2
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCee-EEeeecCCceeE-EEEecCCCEEEEEeCC----e
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKC-VEEYSLPNAASL-VDFDFDESKIVGLIGT----R 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~ 173 (430)
..+..+..+...+ +++| +++ ++++++. ++.|.+||..+++. ...+..+..... ++|+|++++++++.++ .
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN 109 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCccc
Confidence 3455556666666 8888 566 5666555 89999999999887 777777666677 9999999999854444 8
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEE-ecCCe-EEEEECCCCeee----EEeecCCCCeEEEEecCC-CE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGT-ARVFDMYSRKCS----QIIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~-i~vwd~~~~~~~----~~~~~~~~~i~~~~~~~~-~~ 246 (430)
|.+||+++++.+.....+.....+++.+++..++++ ..++. |.+|++.....+ .........+..++|+|+ ++
T Consensus 110 i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 999999988754333333334556777777765554 55578 999998754332 111233456889999987 54
Q ss_pred -EEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce--eeeeecC---
Q 014104 247 -IISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS--LWETRIS--- 316 (430)
Q Consensus 247 -l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~--- 316 (430)
++++..++.|.+||+.+++. +..+.. ...+..++|+|+|+++++++ .++.|.+||+.+++. +..+..+
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence 45555789999999999988 777773 45788999999999777655 477899999998876 3333222
Q ss_pred -CCc---eEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCc
Q 014104 317 -PNV---VYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGE 351 (430)
Q Consensus 317 -~~~---v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~ 351 (430)
... ...++ |+|+|++|++++ .++.|.+||+....
T Consensus 268 ~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 268 DPRPLFGANQMA-LNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCGGGTTCCCEE-ECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCcccccceE-ECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 222 24477 999999886554 56799999998543
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=1.1e-20 Score=189.87 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=183.5
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCC---eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
.|.+++| +|| +|++++. +.|.+||+.++ +..........+..++|+|||+.|+...++.|.+||+.+++.....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 3788889 566 7888776 99999999987 4443333335677899999999999777889999999987643222
Q ss_pred CCCc--e---------------eeeeEEEEcCCceEEEecCC---------------------------------eEEEE
Q 014104 189 REGT--F---------------MKGLCMRYFDPEAVVGCEDG---------------------------------TARVF 218 (430)
Q Consensus 189 ~~~~--~---------------~~~~~~~~~~~~l~~~~~dg---------------------------------~i~vw 218 (430)
..+. . ...+.|++++..|++++.|+ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 2111 1 24578888888898887765 88999
Q ss_pred ECCC-CeeeEEee--cCCCCeEEEEecCC-CEEEEEeC-----CCeEEEEeCCCCceeEEEecCCCC---CeEEEEEecC
Q 014104 219 DMYS-RKCSQIIR--MHCAPVTSLSLSED-QLIISGSS-----LGSIAISGLSSDQRVATLRSTDCT---GIKTLCYNPC 286 (430)
Q Consensus 219 d~~~-~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~ 286 (430)
|+.+ ++...... .|...+..++| |+ +.|++++. +..|.+||+.+++....+...... .+..++|+|+
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9988 77654443 36778999999 87 67776543 578999999999887776652322 4568899999
Q ss_pred CCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEE-EcCCC--eEEEEEcCC-CceEEEEEeccC
Q 014104 287 SRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVV-GGIDG--VLRVLDQNT-GEVLSRCVMDIG 361 (430)
Q Consensus 287 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s-~~~dg--~i~vwd~~~-~~~~~~~~~~~~ 361 (430)
|+++++++.||.+.+|.+. +++ ...+..|...+..+..|+|+++.|+. ++.++ .+++|++.. +.....+.. ..
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 9999999999987777665 344 67777787788877449999997754 44555 899999864 544554443 33
Q ss_pred cceeeeccCCce
Q 014104 362 SASSSSNKVSGV 373 (430)
Q Consensus 362 ~~~~~~~s~d~~ 373 (430)
.+..+++|+||.
T Consensus 426 ~~~~~~~spdg~ 437 (741)
T 2ecf_A 426 GMHSASFARNAS 437 (741)
T ss_dssp SEEEEEECTTSS
T ss_pred CceEEEECCCCC
Confidence 233344444443
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=2.4e-21 Score=194.01 Aligned_cols=230 Identities=9% Similarity=0.002 Sum_probs=168.7
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEE-EEeC---------CeEEEE
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLIG---------TRICIW 177 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~~---------~~i~vw 177 (430)
.+.+++| ++| ++++ +.||+|++||+.+++....+..+.. +..++|+|||++|+ ++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3567888 566 5554 7899999999999988877776543 77899999999998 4443 789999
Q ss_pred EcCCCccc-ccCCCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe------------------
Q 014104 178 RRNGLRSV-FPSREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV------------------ 236 (430)
Q Consensus 178 d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i------------------ 236 (430)
|+++++.. +.....+ ......+++++..|+.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 99988642 2222222 1345678888888888876 799999999888776665444333
Q ss_pred EEEEecCC-CEEEEEeCCC----------------------------------eEEEEeCCCCceeEEEecC-----CCC
Q 014104 237 TSLSLSED-QLIISGSSLG----------------------------------SIAISGLSSDQRVATLRST-----DCT 276 (430)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~-----~~~ 276 (430)
.+++|+|+ +.|++++.|+ .|++||+.+++....+..+ +..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 78999987 7788876543 8999999988865666542 145
Q ss_pred CeEEEEEecCCCEEEEEeC----CCeEEEEeCCCCceeeeeecC-CCceE----EEEEeeCCCCeEEE--EcCCC-----
Q 014104 277 GIKTLCYNPCSRLVFAGTT----AGYASCWDLRTMKSLWETRIS-PNVVY----SLQHLQNDTSTLVV--GGIDG----- 340 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~~~v~----~l~~~s~~~~~l~s--~~~dg----- 340 (430)
.+..++|+|||+++++... +..|++||+.+++....+..+ ...+. .+. |+|||+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV-FSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE-ECTTSCSEEEEEEECCSSSSCE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce-EcCCCCeEEEEEecccCCCcce
Confidence 7899999999998876643 357999999998876655433 33333 677 9999997775 44666
Q ss_pred -eEEEEE
Q 014104 341 -VLRVLD 346 (430)
Q Consensus 341 -~i~vwd 346 (430)
.|.+||
T Consensus 335 ~~l~~~d 341 (723)
T 1xfd_A 335 YHITVSS 341 (723)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 566777
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.3e-20 Score=183.83 Aligned_cols=231 Identities=15% Similarity=0.103 Sum_probs=167.8
Q ss_pred ccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe---CCeEEEEE--c--
Q 014104 112 SVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI---GTRICIWR--R-- 179 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~---~~~i~vwd--~-- 179 (430)
..+|.+++| +|| +||+++. ||+++||++.+++.......+ ..+..++|+|| +.++ +.. +....+|. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 446999998 677 8888877 999999999887766555444 35677889988 5555 332 34455554 4
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC----
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---- 253 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---- 253 (430)
.+....+....+ ....++++++.. +++.+.++.+.+||+.+++.......+ . .+++|+|+ +.+++++.+
T Consensus 100 ~g~~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQRLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCEECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccccccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCC
Confidence 333332222222 235688888876 444444455569999988776555433 3 78899976 788877776
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeeeeecCCCceEEEE-------
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASCWDLRTMKSLWETRISPNVVYSLQ------- 324 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~------- 324 (430)
+.|++||+.+++.. .+.. +...+..++|+|||+.|+++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-Eeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 78999999988765 5554 677899999999999999888888 8999999988877 6666665444332
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.|+|||..+++++.|+.+++|++ |+..
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 18999988899999999999999 6544
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.2e-20 Score=165.52 Aligned_cols=233 Identities=11% Similarity=-0.029 Sum_probs=170.9
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-CeeEEeeecC--CceeEEEEecCCCEEE-EEe----CCe
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP--NAASLVDFDFDESKIV-GLI----GTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~----~~~ 173 (430)
....+..|.+.|.+++| +++ +|++++ ++.|.+||+.+ ++.......+ ..+..++|+|+++.++ +.. ...
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 44567789999999999 566 777766 88999999999 8877666554 4456699999999999 442 244
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCC-CeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|..++..++.......... .....+.+++..++ ++..++.+.+|++.. +.....+..+...+.+++|+|+ +.++.+
T Consensus 112 l~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp EEEEETTCCCCEECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCceEEeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence 5555555554322222222 34456666777665 788899999998532 2344566667889999999986 666655
Q ss_pred e-CCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----------CeEEEEeCCCCce--eeeeec
Q 014104 251 S-SLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----------GYASCWDLRTMKS--LWETRI 315 (430)
Q Consensus 251 ~-~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~--~~~~~~ 315 (430)
+ .++.+.+|++. .+.....+.. +...+..++|+|+|++|++++.+ +.|++||+.+++. +..+.+
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 269 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG 269 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred ecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence 5 58999999886 4555666655 56688999999999999887765 5699999998765 444557
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
|...+..+. |+|++++|++++.+.
T Consensus 270 ~~~~~~~~~-~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 270 GQGTMNSPN-WSPDGDEFAYVRYFP 293 (297)
T ss_dssp STTTSCSCC-BCTTSSEEEEEEECC
T ss_pred CCcccccce-ECCCCCEEEEEEecc
Confidence 788899998 999999998887653
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.4e-18 Score=158.16 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=168.7
Q ss_pred CCCeEEEEecC--CCeeEE--eeecCCceeEEEEecCCCEEEEEe---CCeEEEEEcCCCcccc-cC--CCCceeeeeEE
Q 014104 130 GDKVMRLWSLE--GYKCVE--EYSLPNAASLVDFDFDESKIVGLI---GTRICIWRRNGLRSVF-PS--REGTFMKGLCM 199 (430)
Q Consensus 130 ~dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~-~~--~~~~~~~~~~~ 199 (430)
.++.|.+|+++ +++... ..........++|+|+++.++++. ++.|.+|+++++.... .. ........+++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 35667777654 555433 333445667799999999333444 5899999997765321 11 11223345677
Q ss_pred EEcCCceEEEe-cCCeEEEEECCC-C--eeeEEeecC---------CCCeEEEEecCC-CEEEEEeCCCeEEEEeCC-CC
Q 014104 200 RYFDPEAVVGC-EDGTARVFDMYS-R--KCSQIIRMH---------CAPVTSLSLSED-QLIISGSSLGSIAISGLS-SD 264 (430)
Q Consensus 200 ~~~~~~l~~~~-~dg~i~vwd~~~-~--~~~~~~~~~---------~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~-~~ 264 (430)
.+++..+++++ .++.|.+||+.. + +.+..+... ...+.+++|+|+ +++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 78888787777 789999999953 3 233333211 124888999986 666666678899999998 55
Q ss_pred cee--EEEecCCCCCeEEEEEecCCCEEEE-EeCCCeEEEEeCCC--Cce--eeeeecCC------CceEEEEEeeCCCC
Q 014104 265 QRV--ATLRSTDCTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRT--MKS--LWETRISP------NVVYSLQHLQNDTS 331 (430)
Q Consensus 265 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~l~~~s~~~~ 331 (430)
+.. ..+.......+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++ |+|+|+
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG~ 252 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR-LSHDGH 252 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE-ECTTSC
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE-ECCCCC
Confidence 433 2223223347889999999996665 56688999999874 432 22232222 3578888 999999
Q ss_pred eE-EEEcCCCeEEEEEcCC-C--ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 332 TL-VVGGIDGVLRVLDQNT-G--EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 332 ~l-~s~~~dg~i~vwd~~~-~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
+| ++...++.|.+||+.. + +.+..+..+ ...+.+++| |
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------------------------------~~~~~~~~~spd 296 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTE------------------------------------GDFPRDFDLDPT 296 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECS------------------------------------SSCCCEEEECTT
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecC------------------------------------CCCcCeEEECCC
Confidence 87 4555689999999873 2 233333321 224567777 5
Q ss_pred CeEEEEeeC-CCeEEEEEec
Q 014104 406 MKKVVTTHN-SKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~~-Dg~v~vw~~~ 424 (430)
|++|++++. ++.|.+|+++
T Consensus 297 g~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEcCCCcEEEEEEe
Confidence 777777665 5899999665
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.5e-19 Score=167.52 Aligned_cols=140 Identities=12% Similarity=0.151 Sum_probs=110.6
Q ss_pred EEecCCeEEEEECCCC--------e---eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC
Q 014104 208 VGCEDGTARVFDMYSR--------K---CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 274 (430)
+|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ .++++++.||+|++||++++..+....+ |
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-S 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-G
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-C
Confidence 5667888888887554 1 24556678999999999974 6899999999999999999877666655 6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-------CCceEEEEEeeCCCCeEEEEc-CCC------
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-------PNVVYSLQHLQNDTSTLVVGG-IDG------ 340 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~s~~~~~l~s~~-~dg------ 340 (430)
...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++. |++++.++++.+ .||
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~-w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL-WIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE-EEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE-EecCceEEEEEccCCCccCCCC
Confidence 7799999999999999999999999999998 5555554433 23789998 888887775433 443
Q ss_pred eEEEEEcCCC
Q 014104 341 VLRVLDQNTG 350 (430)
Q Consensus 341 ~i~vwd~~~~ 350 (430)
.+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3899999854
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=1.7e-17 Score=151.85 Aligned_cols=262 Identities=9% Similarity=0.099 Sum_probs=168.0
Q ss_pred eEEEEe----CCCeEEEEec--CCCeeE--EeeecCCceeEEEEecCCCEEE-EEeC----CeEEEEEcCC--Ccc-ccc
Q 014104 124 LILTGV----GDKVMRLWSL--EGYKCV--EEYSLPNAASLVDFDFDESKIV-GLIG----TRICIWRRNG--LRS-VFP 187 (430)
Q Consensus 124 ~l~s~~----~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~-~~~~----~~i~vwd~~~--~~~-~~~ 187 (430)
+++.|+ .++.|.+|++ .+++.. ... .......++|+|+++.|+ ++.+ +.+.+|+++. ++. ...
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 556664 4578999966 455443 333 345566799999999888 4443 7999999875 332 111
Q ss_pred CCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeEEe---ecC-----------CCCeEEEEecCC-CEEEE-E
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQII---RMH-----------CAPVTSLSLSED-QLIIS-G 250 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~~-----------~~~i~~~~~~~~-~~l~~-~ 250 (430)
...........+..++..+++++ .++.|.+|++.....+..+ ..+ ...+.+++|+|+ +++++ .
T Consensus 94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 11111112233444566566665 6789999999754332211 111 223578999987 54544 4
Q ss_pred eCCCeEEEEeCCCCce------e------EEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce--eeeee-
Q 014104 251 SSLGSIAISGLSSDQR------V------ATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS--LWETR- 314 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~- 314 (430)
..++.|.+|++..... + ..........+..++|+|+|+++++++ .++.|.+||+.+++. +..+.
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~ 253 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA 253 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence 4588999998875431 1 222322455789999999999888777 689999999987654 22222
Q ss_pred --cCCCceEEEEEeeCCCCeEEEEcC--CCeEEEEEcC--CCce--EEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 315 --ISPNVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQN--TGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 315 --~~~~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~~--~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
.+......++ |+|+|++|+++.. ++.|.+|++. +++. +..+.. +
T Consensus 254 ~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g------------------------- 305 (361)
T 3scy_A 254 DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G------------------------- 305 (361)
T ss_dssp CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S-------------------------
T ss_pred CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C-------------------------
Confidence 2334567888 9999999876665 4899999996 4542 333322 1
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEec
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFN 424 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~ 424 (430)
..+.+++| ||++|++++ .++.|.+|+++
T Consensus 306 ----------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 ----------IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ----------SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ----------CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 24556777 577777776 67999998775
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=9e-20 Score=182.50 Aligned_cols=233 Identities=12% Similarity=-0.007 Sum_probs=165.2
Q ss_pred EEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEE-EEe---------CCeEEEEEcCC
Q 014104 117 QCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLI---------GTRICIWRRNG 181 (430)
Q Consensus 117 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~---------~~~i~vwd~~~ 181 (430)
.+.| +++.++..+.|++|++||+.+++....+.++.. +..++|+|||+.|+ ++. ++.|++||+++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 5667 567555556799999999999988777765433 77899999999998 444 58999999998
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCe-----------------EEEEecC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPV-----------------TSLSLSE 243 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~ 243 (430)
++.+.............+++++..|+.+. ++.|++||+.+++..... .++...| .+++|+|
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred CccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 87521011112345578888888888875 789999999888765433 2332222 4899998
Q ss_pred C-CEEEEEeCCC----------------------------------eEEEEeCCCCcee--EEEe-----cCCCCCeEEE
Q 014104 244 D-QLIISGSSLG----------------------------------SIAISGLSSDQRV--ATLR-----STDCTGIKTL 281 (430)
Q Consensus 244 ~-~~l~~~~~dg----------------------------------~i~vwd~~~~~~~--~~~~-----~~~~~~v~~~ 281 (430)
+ +.|++++.|. .|++||+.+++.. ..+. ..+...+..+
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 7 7888877542 7899999987653 1221 1256678999
Q ss_pred EEecCCCEEEEEeCC----CeEEEEe----CCCCceeeee----ecCCCceE-----EEEEeeCCCCeEEE--EcCCC--
Q 014104 282 CYNPCSRLVFAGTTA----GYASCWD----LRTMKSLWET----RISPNVVY-----SLQHLQNDTSTLVV--GGIDG-- 340 (430)
Q Consensus 282 ~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~----~~~~~~v~-----~l~~~s~~~~~l~s--~~~dg-- 340 (430)
+|+||++++++.... ..|.+|| +.+++....+ ..|...+. .+. |+|||+.++. +..+|
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV-FSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE-ECTTSSCEEEEEECTTSCE
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE-ECCCCCeEEEEEEccCCce
Confidence 999998877764432 2488999 8887766555 46666666 677 9999996654 44555
Q ss_pred eEEEEEcCCCc
Q 014104 341 VLRVLDQNTGE 351 (430)
Q Consensus 341 ~i~vwd~~~~~ 351 (430)
.|.+||+.+++
T Consensus 338 ~l~~~~~~~~~ 348 (719)
T 1z68_A 338 HIHYIKDTVEN 348 (719)
T ss_dssp EEEEESSCSTT
T ss_pred EEEEEECCCCc
Confidence 57777877665
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=2.7e-19 Score=162.75 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=160.2
Q ss_pred EEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCc--eeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCC
Q 014104 158 DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGT--FMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 158 ~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (430)
++++++..++ ++.++.|.+||+.+++.......+. ....+++.+++..+ +++..++.|.+||+.+++.+..+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 4566777777 7789999999999887432222122 23345666666654 455678999999999998887776332
Q ss_pred ------CCeEEEEecCC-CEEEEEeCC------------CeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEE
Q 014104 234 ------APVTSLSLSED-QLIISGSSL------------GSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 234 ------~~i~~~~~~~~-~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
..+..++|+|+ +++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|+ ++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-EE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-EE
Confidence 23778999976 678887755 8999999988443 34444 344688999999999 66
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCC------------------------------------------------------
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISP------------------------------------------------------ 317 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------------------ 317 (430)
+++. .|.+||+.+++.+..+..+.
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 6544 39999999887766554331
Q ss_pred --------------CceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 318 --------------NVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 318 --------------~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
..+.+++ ++| ++++++++ ++.|.+||+.+++.+..+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------------------- 294 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGL-RSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----------------------- 294 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEE-ECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------------------
T ss_pred cCCcEEecccccCCCcceeeE-ecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------------------
Confidence 1233444 668 88888777 778888888888777766531
Q ss_pred cCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+++| ++++|++++.++.|++||+++++.
T Consensus 295 --------------~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 295 --------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp --------------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred --------------CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 13456666 577787788899999999987753
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=7.6e-18 Score=153.23 Aligned_cols=247 Identities=10% Similarity=0.100 Sum_probs=165.4
Q ss_pred EEeccccceeEEEe-cCCeEEEEeC---CCeEEEEecCCCe--eEEeee-cCCceeEEEEecCCCEEE-EE-eCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRGLILTGVG---DKVMRLWSLEGYK--CVEEYS-LPNAASLVDFDFDESKIV-GL-IGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~-~~-~~~~i~vw 177 (430)
....+...+..++| +++.|++++. ++.|.+||+.+++ .+..+. ....+..++|+|+++.|+ ++ .++.+.+|
T Consensus 34 ~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 34 GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 34455667778888 5665555544 6899999998766 333333 345667799999999888 54 57899999
Q ss_pred EcCC-Cc--ccccC-CC---------CceeeeeEEEEcCCceEEEecCCeEEEEECC-CCeee--EEeecC-CCCeEEEE
Q 014104 178 RRNG-LR--SVFPS-RE---------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCS--QIIRMH-CAPVTSLS 240 (430)
Q Consensus 178 d~~~-~~--~~~~~-~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~--~~~~~~-~~~i~~~~ 240 (430)
++.. +. .+... .. ......+++.+++..+++...++.|.+||+. +++.. ..+..+ ...+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 22 11111 11 1113346666677745555668899999998 45432 222222 23678899
Q ss_pred ecCC-CEEE-EEeCCCeEEEEeCCC--Cce--eEEEecCCC-----CCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC--
Q 014104 241 LSED-QLII-SGSSLGSIAISGLSS--DQR--VATLRSTDC-----TGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT-- 306 (430)
Q Consensus 241 ~~~~-~~l~-~~~~dg~i~vwd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-- 306 (430)
|+|+ ++++ ++..++.|.+|++.. ++. +..+..... ..+..++|+|+|++|+ +...++.|.+|++..
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9987 5444 456788999999874 443 223332111 3588999999999875 555689999999973
Q ss_pred -CceeeeeecCCCceEEEEEeeCCCCeEEEEcC-CCeEEEE--EcCCCceEE
Q 014104 307 -MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI-DGVLRVL--DQNTGEVLS 354 (430)
Q Consensus 307 -~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~-dg~i~vw--d~~~~~~~~ 354 (430)
.+.+..+..+...+..++ |+|+|++|++++. ++.|.+| |..+|+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 245555666666788998 9999998888775 4899999 555676543
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=3.5e-20 Score=173.39 Aligned_cols=200 Identities=13% Similarity=0.010 Sum_probs=148.1
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCC----------eeeE-----EeecCCCCeEEEEecCC-CEEE----EEeCC
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------KCSQ-----IIRMHCAPVTSLSLSED-QLII----SGSSL 253 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~-----~~~~~~~~i~~~~~~~~-~~l~----~~~~d 253 (430)
...+++...+..+++++.++ +++|+.... ..+. ....+.+.|.+++|+|+ ++++ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 34566666677788888887 888764211 0010 11135668999999976 7787 78899
Q ss_pred CeEEEEeCCCC--------ce---eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 254 GSIAISGLSSD--------QR---VATLRSTDCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 254 g~i~vwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
+.|++||+.++ +. +..+.+ |...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...|.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence 99999998754 22 233333 6789999999998 78999999999999999999877767777889999
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
+++ |+|+|++|++|+.||.|++||++ ++....+..+.. ....|...|.+
T Consensus 197 ~v~-wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-----------------------------~~~~~~~~v~~ 245 (434)
T 2oit_A 197 SVC-WSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-----------------------------YESDHPVRVLD 245 (434)
T ss_dssp EEE-ECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT-----------------------------CCTTSCEEEEE
T ss_pred EEE-EcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc-----------------------------cCCCCceeEEE
Confidence 999 99999999999999999999998 666666654322 01124457889
Q ss_pred EEEc--CeEEEE-eeCCC------eEEEEEecCC
Q 014104 402 LAVG--MKKVVT-THNSK------YIRLWKFNYS 426 (430)
Q Consensus 402 v~~~--~~~l~t-~~~Dg------~v~vw~~~~~ 426 (430)
++|+ +.++++ ++.|| .+++|++...
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9994 455533 44454 3889999754
No 157
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=6.2e-19 Score=176.57 Aligned_cols=270 Identities=6% Similarity=-0.030 Sum_probs=184.5
Q ss_pred eEEEEecccc---ceeEEEe-cCC-eEEEEeCC---------CeEEEEecCCCeeEEeeecC----CceeEEEEecCCCE
Q 014104 104 DIDQWKAHSV---GVDQCRM-KRG-LILTGVGD---------KVMRLWSLEGYKCVEEYSLP----NAASLVDFDFDESK 165 (430)
Q Consensus 104 ~~~~l~~h~~---~v~~~~~-~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 165 (430)
....+.+|.. .|.+++| +|| +|++++.+ +.+.+||+.+++. ..+... ..+..++|+|||+.
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 49 STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE
Confidence 4456666665 4899999 566 88888764 7888999998876 333322 12567899999999
Q ss_pred EEEEeCCeEEEEEcCCCcccc--cCCCCce-----------------eeeeEEEEcCCceEEEecCC-------------
Q 014104 166 IVGLIGTRICIWRRNGLRSVF--PSREGTF-----------------MKGLCMRYFDPEAVVGCEDG------------- 213 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~l~~~~~dg------------- 213 (430)
|+...++.|++||+.+++... ....... ...+.|++++..|++++.++
T Consensus 128 la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 128 LIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 996667999999999876432 2111111 13477778888888877553
Q ss_pred ---------------------eEEEEECCCCeeeEEeecC------CCCeEEEEecCC-CEEEEEeC----CCeEEEEeC
Q 014104 214 ---------------------TARVFDMYSRKCSQIIRMH------CAPVTSLSLSED-QLIISGSS----LGSIAISGL 261 (430)
Q Consensus 214 ---------------------~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~~-~~l~~~~~----dg~i~vwd~ 261 (430)
.|++||+.+++....+..+ ...+..++|+|+ +++++.+. +..|.+||+
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 8999999988865666544 567899999987 55555532 358999999
Q ss_pred CCCceeEEEecCCCCCe----EEEEEecCCCEEEE--EeCCC------eEEEEe-CCCCce--eeeeecCCCceEE-EEE
Q 014104 262 SSDQRVATLRSTDCTGI----KTLCYNPCSRLVFA--GTTAG------YASCWD-LRTMKS--LWETRISPNVVYS-LQH 325 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~-l~~ 325 (430)
.+++....+...+...+ ..++|+|+|+.|+. +..++ .|++|| ..+++. ...+..+...+.. +.
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~- 366 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA- 366 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE-
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE-
Confidence 99987766654344443 37899999997764 45666 577788 344441 4455544444554 56
Q ss_pred eeCCCCeEEEEcCC---CeEEEEEcCCCc--eEEEEEe---ccCcceeeeccCCceEE
Q 014104 326 LQNDTSTLVVGGID---GVLRVLDQNTGE--VLSRCVM---DIGSASSSSNKVSGVIE 375 (430)
Q Consensus 326 ~s~~~~~l~s~~~d---g~i~vwd~~~~~--~~~~~~~---~~~~~~~~~~s~d~~v~ 375 (430)
|+|+|+.|+..+.+ +.+++|++.... ....+.. +...+..+++|+||...
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l 424 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEE
Confidence 99999999766554 789999986432 2333332 34455667788887644
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.6e-16 Score=145.24 Aligned_cols=240 Identities=8% Similarity=0.077 Sum_probs=158.7
Q ss_pred cccceeEEEe-cCC-eEEEEeCC----CeEEEEecCC--Cee--EEeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEE
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGD----KVMRLWSLEG--YKC--VEEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIW 177 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vw 177 (430)
|...+..++| +++ +|++++.+ +.|.+|++.. ++. +.....+ .....+++ +++.++ +. .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 6667778888 566 78888875 8999998865 443 3333322 33444555 888777 33 47899999
Q ss_pred EcCCCccccc-----CCCC----------ceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCee------e-------EE
Q 014104 178 RRNGLRSVFP-----SREG----------TFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKC------S-------QI 228 (430)
Q Consensus 178 d~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~------~-------~~ 228 (430)
++.....+.. .+.+ .....+++.+++..+++++ .++.|.+|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432111 0111 1113466777777655544 588999998865431 1 11
Q ss_pred eecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCCCce--eEEEec--CCCCCeEEEEEecCCCEEEEEeCC--CeEE
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQR--VATLRS--TDCTGIKTLCYNPCSRLVFAGTTA--GYAS 300 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d--g~i~ 300 (430)
...+...+..++|+|+ +++++++ .++.|.+||+.+++. +..+.. .+...+..++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 2233456789999987 6666665 689999999987754 333322 122457899999999998776654 8999
Q ss_pred EEeCC--CCc--eeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCceEE
Q 014104 301 CWDLR--TMK--SLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEVLS 354 (430)
Q Consensus 301 i~d~~--~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~~~ 354 (430)
+|++. +++ .+..+.. ...+..++ |+|+|++|++++ .++.|.+|++ .+++...
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFI-ITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEE-ECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEE-ECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 99986 344 3444444 45678888 999999888877 6789999654 4666543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=9.1e-17 Score=147.14 Aligned_cols=267 Identities=8% Similarity=0.082 Sum_probs=168.5
Q ss_pred eEEEEeCC--CeEEEEec--CCCeeEE--eee--cCCceeEEEEecCCCEEE-EEeCCeEEEEEcC-CCccccc-CC--C
Q 014104 124 LILTGVGD--KVMRLWSL--EGYKCVE--EYS--LPNAASLVDFDFDESKIV-GLIGTRICIWRRN-GLRSVFP-SR--E 190 (430)
Q Consensus 124 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~-~~~~~~~-~~--~ 190 (430)
+++.|+.. +.|.+|++ .+++... ... ....+..++++|++++|+ ++.+ .|.+|+++ +++.... .+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45556553 56877764 5665432 222 223566799999999888 5555 99999997 6553211 11 1
Q ss_pred CceeeeeEEEEcCCc--eEEEe-------------cCCeEEEEECC-CCeeeEEee----cCCCCeEEEEecCC-CEEEE
Q 014104 191 GTFMKGLCMRYFDPE--AVVGC-------------EDGTARVFDMY-SRKCSQIIR----MHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~ 249 (430)
+. ...+++.+++.. ++++. .+|.+.+|++. +++....+. .+...+.+++|+|+ +++++
T Consensus 83 g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 83 GH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp SS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 11 222445555553 34442 68999999997 465544443 24567899999987 66766
Q ss_pred Ee-CCCeEEEEeCC-CCcee--EEEecC-CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCC--CCcee---e---eee-
Q 014104 250 GS-SLGSIAISGLS-SDQRV--ATLRST-DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLR--TMKSL---W---ETR- 314 (430)
Q Consensus 250 ~~-~dg~i~vwd~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~---~~~- 314 (430)
+. .++.|.+||+. +++.. ..+... +...+..++|+|+|+++++++. ++.|.+|++. +++.. . .+.
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 55 46899999998 67653 333321 3457999999999999987765 6899999765 45532 1 121
Q ss_pred ---cCCC------ceEEEEEeeCCCCeEEEEcCC-C-----eEEEEEcC-CCceEEE---EEeccCcceeeeccCCceEE
Q 014104 315 ---ISPN------VVYSLQHLQNDTSTLVVGGID-G-----VLRVLDQN-TGEVLSR---CVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 315 ---~~~~------~v~~l~~~s~~~~~l~s~~~d-g-----~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~s~d~~v~ 375 (430)
+|.. .+..+++++|||++|++++.+ + .|.+|++. +++.... ...+....
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~------------ 309 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG------------ 309 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT------------
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc------------
Confidence 1221 466775589999988876643 2 89999996 5665432 11111100
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeC-CCeEEEEEecCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHN-SKYIRLWKFNYS 426 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~-Dg~v~vw~~~~~ 426 (430)
.-.+++. ||++|++++. ++.|++|+++.+
T Consensus 310 ----------------------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 310 ----------------------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ----------------------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ----------------------ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1112333 5778888776 489999998764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.2e-18 Score=166.99 Aligned_cols=255 Identities=11% Similarity=-0.037 Sum_probs=167.1
Q ss_pred CceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCcccccC-CCCceeeeeEEEEcCCceEEEec---CCeEEEEECCC---
Q 014104 152 NAASLVDFDFDESKIV-GLI-GTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCE---DGTARVFDMYS--- 222 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~--- 222 (430)
..+..++|+|||+.|+ ++. ++.+.+|++++++..... +.........++++ ..+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 3577799999999999 555 999999999777643222 22123333334433 23555554 44455554332
Q ss_pred CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 014104 223 RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---- 296 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 296 (430)
+... .+... ..+...+|+|+ ..+++.+.++.+.+||+.+++....... +. .+++|+|||++|++++.+
T Consensus 101 g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 101 GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEETTE
T ss_pred Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 23345566644 4444444455556999998876655543 22 789999999999988776
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC--eEEEEEcCCCceEEEEEeccCcceeee-------
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG--VLRVLDQNTGEVLSRCVMDIGSASSSS------- 367 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~------- 367 (430)
+.|++||+.+++.. .+..|.+.+..++ |+|||+.|+++..++ .|++||+.+++.. .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~-~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSAS-ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEE-ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccce-ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 78999999987754 6777888899998 999999999888888 8999999988877 5555555444445
Q ss_pred -ccCCceEE----------EeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCe-EEEEEecC
Q 014104 368 -NKVSGVIE----------RNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKY-IRLWKFNY 425 (430)
Q Consensus 368 -~s~d~~v~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~-v~vw~~~~ 425 (430)
+++||.+. ++.. +.... .+...|.+++| +++.+++++.+.+ -.+|.++.
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~-----g~~~~----~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID-----GERVE----APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET-----TEEEC----CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE-----CCeec----cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 67777443 3332 22221 23356777777 6888888877754 45555543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=4.3e-17 Score=150.54 Aligned_cols=296 Identities=10% Similarity=-0.005 Sum_probs=183.6
Q ss_pred CEeEEEEeccccceeE-----EEe-cCC-eEEEEeC-CC--eEEEEecCCCeeEEeeecCCcee-EEEEecCCCEEE-EE
Q 014104 102 RIDIDQWKAHSVGVDQ-----CRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GL 169 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~-----~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~ 169 (430)
...+..+..|...... .+| ||| +|+.++. ++ .|.+||+.+++.......+.... ...|+||++.|+ +.
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 3456778888776665 677 567 7777776 66 48888999988877666654443 578999999999 67
Q ss_pred eCCeEEEEEcCCCccc--ccCCCCceeeeeEE--EEcCCceEE----------------------EecCCeEEEEECCCC
Q 014104 170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCM--RYFDPEAVV----------------------GCEDGTARVFDMYSR 223 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~----------------------~~~dg~i~vwd~~~~ 223 (430)
.++.+.+||+.+++.. ...+.. ......+ .+++..++. ...+..|.+||+.++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CCCeEEEEECCCCcceeeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 7889999999988743 222222 2211222 223333432 123478999999988
Q ss_pred eeeEEeecCCCCeEEEEecC-C-CEEEEEeCC------CeEEEEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEe
Q 014104 224 KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 294 (430)
+.. .+..+...+..+.|+| + +.++.+..+ ..|.++|+..++. ..+..... ..+....|+|+|+.|+..+
T Consensus 179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEe
Confidence 654 4445667899999999 6 566665543 3788888775543 44443222 2578889999999776443
Q ss_pred C-CC----eEEEEeCCCCcee--eeeecCCCc---eEEEEEeeCCCCeEEEE---------cCCCeEEEEEcCCCceEEE
Q 014104 295 T-AG----YASCWDLRTMKSL--WETRISPNV---VYSLQHLQNDTSTLVVG---------GIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 295 ~-dg----~i~i~d~~~~~~~--~~~~~~~~~---v~~l~~~s~~~~~l~s~---------~~dg~i~vwd~~~~~~~~~ 355 (430)
. ++ .|++||+.+++.. ..+.++... ..... |+|||+.|+.. ..+..|++||+.+++. ..
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 334 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL-MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HR 334 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE-EEEEECCC------------CCCCEEEEEETTTTEE-EE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe-EccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EE
Confidence 3 22 3999999988643 233321000 11124 88999988754 4567899999997764 44
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE-eeCCCeEEEEEecCCC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT-THNSKYIRLWKFNYSD 427 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t-~~~Dg~v~vw~~~~~~ 427 (430)
+..+...... +.......+.+++| ||++|+. +..+|...||.++-.+
T Consensus 335 l~~~~~~~~~-------------------------~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 335 VARHDTSWKV-------------------------FEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEECCCCCCC-------------------------BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred eccccCcccc-------------------------cccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 4443320000 00000112444555 5666654 4468888888876543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=172.25 Aligned_cols=243 Identities=9% Similarity=0.006 Sum_probs=167.3
Q ss_pred eEEEEecccc---ceeEEEe-cCC-eEEEEeC---------CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE
Q 014104 104 DIDQWKAHSV---GVDQCRM-KRG-LILTGVG---------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169 (430)
Q Consensus 104 ~~~~l~~h~~---~v~~~~~-~~~-~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (430)
....+.+|.. .+.+++| +|| +|++++. ++.|++||+.+++.+........+..++|+|||+.|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~ 127 (719)
T 1z68_A 48 SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV 127 (719)
T ss_dssp EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE
T ss_pred EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE
Confidence 3444455544 3889999 566 8888776 789999999998873222223456779999999999977
Q ss_pred eCCeEEEEEcCCCcccccCCCCc---e----------------eeeeEEEEcCCceEEEecCC-----------------
Q 014104 170 IGTRICIWRRNGLRSVFPSREGT---F----------------MKGLCMRYFDPEAVVGCEDG----------------- 213 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~l~~~~~dg----------------- 213 (430)
.++.|++|++.+++.......++ + .....|++++..|++++.|.
T Consensus 128 ~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 128 YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 79999999998876432221111 1 13578888888888887652
Q ss_pred -----------------eEEEEECCCCeee--------EEeecCCCCeEEEEecCCC-EEEEEeCC----CeEEEEe---
Q 014104 214 -----------------TARVFDMYSRKCS--------QIIRMHCAPVTSLSLSEDQ-LIISGSSL----GSIAISG--- 260 (430)
Q Consensus 214 -----------------~i~vwd~~~~~~~--------~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~i~vwd--- 260 (430)
.|++||+.+++.. ..+.+|...+..++|+|+. ++++.... ..|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999888653 1233577889999999885 44443322 3588999
Q ss_pred -CCCCceeEEEe---cCCCCCeE-----EEEEecCCCEEEE--EeCCC--eEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 261 -LSSDQRVATLR---STDCTGIK-----TLCYNPCSRLVFA--GTTAG--YASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 261 -~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+.+++....+. ..+...+. .+.|+|+|+.++. ...+| .|.+||+.+++ ...+..+...+..+. ++
T Consensus 288 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~-~~ 365 (719)
T 1z68_A 288 DWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF-RV 365 (719)
T ss_dssp SSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE-EE
T ss_pred CCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE-EE
Confidence 87776654442 22555565 7899999996554 44555 57778887666 445555666677777 55
Q ss_pred CCCCeEEEEcCC-----CeEEEEEcCC
Q 014104 328 NDTSTLVVGGID-----GVLRVLDQNT 349 (430)
Q Consensus 328 ~~~~~l~s~~~d-----g~i~vwd~~~ 349 (430)
+++.|+..+.+ +..++|.+..
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77767666554 7888888753
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=2.1e-16 Score=144.13 Aligned_cols=262 Identities=15% Similarity=0.090 Sum_probs=177.8
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC-------CceeEEEEecCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP-------NAASLVDFDFDE 163 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~ 163 (430)
..+.++..+..+ .+++ +++ +++++. .++.|.+||..+++.+.++..+ .....++++|||
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg 119 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG 119 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC
Confidence 345667777666 7788 566 777765 3678999999999998888743 345569999999
Q ss_pred CEEE-EEe--CCeEEEEEcCCCccccc-CCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCC-CeeeEE------eec
Q 014104 164 SKIV-GLI--GTRICIWRRNGLRSVFP-SREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYS-RKCSQI------IRM 231 (430)
Q Consensus 164 ~~l~-~~~--~~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~------~~~ 231 (430)
++|+ +.. ++.|.+||+++++.+.. ...+.. ....+.+.+ ..+++.+.||.+.+|+... ++.... +..
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9998 443 57899999998875433 222211 112223333 3478889999999999865 554422 122
Q ss_pred CCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCce--eEEEecC------C---CCCeEEEEEecCCCEEEEEeC----
Q 014104 232 HCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQR--VATLRST------D---CTGIKTLCYNPCSRLVFAGTT---- 295 (430)
Q Consensus 232 ~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~---- 295 (430)
...++ .+.+.+ +..++..+.++.|.++|+..... ...+... . ......++|+|+++.++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222 122233 34566667889999999875432 2222110 0 012223789999888887643
Q ss_pred -------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcceee
Q 014104 296 -------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSS 366 (430)
Q Consensus 296 -------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~ 366 (430)
.+.|.+||+.+++.+.++..+. +.+++ ++|+|++|++++. +.|.+||..++ +.+.++......-..+
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia-~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMT-IDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEE-EETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEE-ECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 3489999999999999998876 89998 9999999999887 99999999999 8888875444434455
Q ss_pred eccCCc
Q 014104 367 SNKVSG 372 (430)
Q Consensus 367 ~~s~d~ 372 (430)
+.++||
T Consensus 354 ~~~p~G 359 (361)
T 2oiz_A 354 QFHPVG 359 (361)
T ss_dssp EECCCS
T ss_pred EecCCC
Confidence 555555
No 164
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=1.4e-15 Score=137.02 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=174.5
Q ss_pred ceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCC
Q 014104 114 GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
....+.+.++ .+++...++.|.+||..+++.+.++........+++++++..+++. .++.|.+||.++++.......+
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 3566777666 5555556799999999999999998766777889999998544455 6899999999988743221111
Q ss_pred c------eeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC---------
Q 014104 192 T------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL--------- 253 (430)
Q Consensus 192 ~------~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d--------- 253 (430)
. ....+++ .+..++++. .++.|.++|+.+++.+..+... .....+.++++ ++++++..+
T Consensus 125 ~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccC
Confidence 1 2222333 555666665 4889999999999988877643 34567888876 544444443
Q ss_pred -CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee--eecCCCceEEEEEeeC-C
Q 014104 254 -GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE--TRISPNVVYSLQHLQN-D 329 (430)
Q Consensus 254 -g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~s~-~ 329 (430)
+.|.++|..+++....+.......+..++++|+++.|+++.. .|.+||..+++.... +..+......++ ++| +
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~-vdp~~ 278 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT-VNPNN 278 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE-ECTTT
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE-EcCCC
Confidence 789999999998887776422347899999999999988765 799999988775421 222235678888 998 4
Q ss_pred CCeEEEE----cCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTLVVG----GIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+...++. ..++.|.+||.. |+.+.++.....
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~ 313 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII 313 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES
T ss_pred CeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC
Confidence 5555555 578999999998 999998876433
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=2.1e-16 Score=158.32 Aligned_cols=236 Identities=8% Similarity=-0.042 Sum_probs=161.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeE--EEEecCCCEEE-EEeC---------CeEE
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASL--VDFDFDESKIV-GLIG---------TRIC 175 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~--~~~~~~~~~l~-~~~~---------~~i~ 175 (430)
...++.| +++ +++++ |++|++||+.+++....+..+.. +.. ++|+|||+.|+ ++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 3567888 566 66665 99999999999988777776532 222 78999999998 4443 6678
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCe-----------------E
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPV-----------------T 237 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~ 237 (430)
+||+++++...............+++++..|+.+ .++.|++||+.+++..+.. .++...+ .
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9999998754322222334567788888888877 4689999999888754422 2332222 3
Q ss_pred EEEecCC-CEEEEEeCCC------------------------------------eEEEEeCCC---Cc--eeEEEec---
Q 014104 238 SLSLSED-QLIISGSSLG------------------------------------SIAISGLSS---DQ--RVATLRS--- 272 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg------------------------------------~i~vwd~~~---~~--~~~~~~~--- 272 (430)
.+.|+|+ +.|+.++.|. .|.+||+.+ ++ ....+..
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 5889987 6777764221 588899988 73 2233432
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeC----CCeEEEEeCCCCc----ee--eee--ecCCCceE-----EEEEeeCCCCeE
Q 014104 273 --TDCTGIKTLCYNPCSRLVFAGTT----AGYASCWDLRTMK----SL--WET--RISPNVVY-----SLQHLQNDTSTL 333 (430)
Q Consensus 273 --~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~v~-----~l~~~s~~~~~l 333 (430)
.+...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ..|...+. ... |+|||+.+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~-fspDG~~l 333 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH-FTLDGNSF 333 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE-ECTTSSEE
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce-EcCCCCEE
Confidence 15557899999999997665433 3379999999887 22 222 44555544 667 99999987
Q ss_pred E-EEc-CC--CeEEEEEcCCCceE
Q 014104 334 V-VGG-ID--GVLRVLDQNTGEVL 353 (430)
Q Consensus 334 ~-s~~-~d--g~i~vwd~~~~~~~ 353 (430)
+ ..+ .+ ..|++||+.+++..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEcCCCceEEEEEECCCCceE
Confidence 6 555 33 46888898866544
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=2.3e-16 Score=144.53 Aligned_cols=238 Identities=9% Similarity=0.019 Sum_probs=161.7
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecC-CCeeEEeeec--CCceeEEEEecCCCE--EEEE--------------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-GYKCVEEYSL--PNAASLVDFDFDESK--IVGL-------------- 169 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~--l~~~-------------- 169 (430)
+...+..+++ +++ +|++++.+ .|.+|++. +++....... ++....++++|+++. ++.+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3446778888 566 78888888 99999997 7776544332 233455889999995 3332
Q ss_pred eCCeEEEEEcCC-Cccc--ccC---CCCceeeeeEEEEcCCceEEEec-CCeEEEEECC-CCeee--EEee--cCCCCeE
Q 014104 170 IGTRICIWRRNG-LRSV--FPS---REGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMY-SRKCS--QIIR--MHCAPVT 237 (430)
Q Consensus 170 ~~~~i~vwd~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~-~~~~~--~~~~--~~~~~i~ 237 (430)
.++.+.+|+++. ++.. ... ........+.+.+++..++++.. ++.|.+||+. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 588999999974 4321 111 12233445667777777776654 6899999998 67643 3333 2356789
Q ss_pred EEEecCC-CEEEEEe-CCCeEEEEeCC--CCcee---EEEec---C---CCC------CeEEEE-EecCCCEEEEEeCCC
Q 014104 238 SLSLSED-QLIISGS-SLGSIAISGLS--SDQRV---ATLRS---T---DCT------GIKTLC-YNPCSRLVFAGTTAG 297 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~-~dg~i~vwd~~--~~~~~---~~~~~---~---~~~------~v~~~~-~~~~~~~l~~~~~dg 297 (430)
.++|+|+ +++++++ .++.|.+|++. +++.. ..+.. . +.. .+..++ |+|+|++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999987 6777666 47899999765 56543 22221 1 111 488999 999999988765432
Q ss_pred ------eEEEEeCC-CCceee---eeecCCCceEEEEEeeC---CCCeEEEEcCC-CeEEEEEcCCC
Q 014104 298 ------YASCWDLR-TMKSLW---ETRISPNVVYSLQHLQN---DTSTLVVGGID-GVLRVLDQNTG 350 (430)
Q Consensus 298 ------~i~i~d~~-~~~~~~---~~~~~~~~v~~l~~~s~---~~~~l~s~~~d-g~i~vwd~~~~ 350 (430)
.|.+|++. +++... ....+...+..++ ++| +|++|++++.+ +.|.+|+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 1333444566777 899 89999998864 89999998765
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=1.6e-15 Score=136.75 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=129.5
Q ss_pred eEEEecCCeEEEEECCCCe-eeEEe---------ecCCCCeEEEEecC-C-CEEEEEe-CCCeEEEEeCCCCceeEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRK-CSQII---------RMHCAPVTSLSLSE-D-QLIISGS-SLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~-~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+++...++.|++||..... .+..+ ..+......++++| + .++++.+ .++.|++|| .+++.+..+..
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~ 183 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE 183 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence 4444455666666653321 33333 23445688999997 5 5666665 689999999 56777777643
Q ss_pred CC---------CCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeee--cCCCceEEEEEeeC------CCCeEE
Q 014104 273 TD---------CTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETR--ISPNVVYSLQHLQN------DTSTLV 334 (430)
Q Consensus 273 ~~---------~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~s~------~~~~l~ 334 (430)
.. ...+..++++|+ ++++++...++.|++||..+++.+..+. .+...+..++ ++| +|+..+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~pg~~~~~~g~~~v 262 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS-YIPGFLFAVNGKPYF 262 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE-EETTEEEEEECCCCT
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee-ecCCEEEEeCCCEEe
Confidence 11 124899999998 7777777788999999999888887774 3456788888 888 333333
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT 412 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~ 412 (430)
+...+..|++||..+++.+..+.... .+.....+|++ +|..+++.
T Consensus 263 ~~~~~~~v~~~~~~~g~~~~~~~~~~---------------------------------~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 263 GDQEPVQGFVMNFSSGEIIDVFKPVR---------------------------------KHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp TCSCCCCEEEEETTTCCEEEEECCSS---------------------------------SCCSSEEEEEECTTSEEEEEE
T ss_pred ccCCCcEEEEEEcCCCeEEEEEcCCC---------------------------------CccCCeeEEEECCCCCEEEEE
Confidence 33345589999999999888764211 23346778888 47788999
Q ss_pred eCCCeEEEEEecCC
Q 014104 413 HNSKYIRLWKFNYS 426 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~ 426 (430)
..+++|++|+++..
T Consensus 310 ~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 310 AHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCEEEEEEEEC
T ss_pred CCCCEEEEEeCCcc
Confidence 99999999998754
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=3.9e-16 Score=154.61 Aligned_cols=247 Identities=13% Similarity=-0.021 Sum_probs=166.4
Q ss_pred EEeccccceeEEEecCC--eEEEE--eCCCeEEEEecCCCeeEEeeecC-Ccee---------EEEEe--cCCCE-EEEE
Q 014104 107 QWKAHSVGVDQCRMKRG--LILTG--VGDKVMRLWSLEGYKCVEEYSLP-NAAS---------LVDFD--FDESK-IVGL 169 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~~--~l~s~--~~dg~i~iwd~~~~~~~~~~~~~-~~~~---------~~~~~--~~~~~-l~~~ 169 (430)
.+.+|...+..++++++ ++++. +.++...||....+.....+..+ ..+. ...++ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 35678889999999755 55555 45889999985444434444433 2223 44455 99998 7744
Q ss_pred e--CCeEEEEEcC--C-Ccc-cccCC----CCceeeeeEEEEcCCceEEEecC----------CeEEEEECCC------C
Q 014104 170 I--GTRICIWRRN--G-LRS-VFPSR----EGTFMKGLCMRYFDPEAVVGCED----------GTARVFDMYS------R 223 (430)
Q Consensus 170 ~--~~~i~vwd~~--~-~~~-~~~~~----~~~~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~ 223 (430)
. +..|.++++. + ++. .+... ........++++++..|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 4 4567777766 3 332 22221 22334567788888888888876 5899999987 5
Q ss_pred eeeEEee-cCCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCC-CC--ceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 224 KCSQIIR-MHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLS-SD--QRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 224 ~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
+. ..+. .+...+..++|+|+ +.|+.++.+ ..|.+||+. ++ .....+...+...+..+.|+|||+++
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 44 4444 55667888999987 778777644 479999998 56 13344443356789999999999988
Q ss_pred EEEeCCC--eEEEEeCCCCceeeeeecCCCc--------eEEEEEeeCCCCeEEEEcCCCeEEEE--EcCCCceEEEEE
Q 014104 291 FAGTTAG--YASCWDLRTMKSLWETRISPNV--------VYSLQHLQNDTSTLVVGGIDGVLRVL--DQNTGEVLSRCV 357 (430)
Q Consensus 291 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~--------v~~l~~~s~~~~~l~s~~~dg~i~vw--d~~~~~~~~~~~ 357 (430)
+++..++ .|.+||+.+++.......+... +..++ ++|+++++++++. +.++|| |+.+++ +..+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFA-PLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEE-ECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEe-EeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 8888888 6777777666654433333221 45676 8899999999998 999999 555444 44443
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=2.8e-14 Score=136.83 Aligned_cols=302 Identities=9% Similarity=0.021 Sum_probs=204.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC--CCcccccCCCCceeeeeEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN--GLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~ 200 (430)
++++...+++|.++|..+++.+.++........+.++||+++++ ++.++.|.+||+. +.+.+.....+.....+.++
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s 248 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 248 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEc
Confidence 67777789999999999999999998776777899999999988 7778999999995 65544444444444556666
Q ss_pred ----EcCCceEEEe-cCCeEEEEECCCCeeeEEeecC----------CC-CeEEEEecCC--CEEEEEeCCCeEEEEeCC
Q 014104 201 ----YFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMH----------CA-PVTSLSLSED--QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 201 ----~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~----------~~-~i~~~~~~~~--~~l~~~~~dg~i~vwd~~ 262 (430)
+++..+++++ .+++|.++|..+.+.+..+... .. .+..+..+++ .+++....+|.|.++|..
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 4677765555 5599999999999988776521 12 5777887764 466666778999999988
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeeec-----CCCceEEEEEeeCCCC-eEEE
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETRI-----SPNVVYSLQHLQNDTS-TLVV 335 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~s~~~~-~l~s 335 (430)
+.+.+....-........+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.+ ....+++|++. ..++
T Consensus 329 ~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t 406 (567)
T 1qks_A 329 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWAT 406 (567)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEE
T ss_pred CCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEe
Confidence 75433222211445678899999999887655 578899999999988776654 322 22334678755 4445
Q ss_pred Ec-CCCeEEEEEcCC-------CceEEEEEeccCcceeeeccCCc-----------------eEEEeecccccC---Ccc
Q 014104 336 GG-IDGVLRVLDQNT-------GEVLSRCVMDIGSASSSSNKVSG-----------------VIERNEGRRLSA---GCC 387 (430)
Q Consensus 336 ~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~d~-----------------~v~~~~~~~~~~---~~~ 387 (430)
+. .++.|.++|..+ .+.++++.....+-..+..++|+ .+.+++...+.. ...
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~ 486 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE 486 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCC
Confidence 53 568999999987 66888887654332333344444 333333333300 011
Q ss_pred cccCC-------CCCCCCeeEEEE--cCeEE-EEee----CCCeEEEEEecCCC
Q 014104 388 IDRIP-------KTIRPPITCLAV--GMKKV-VTTH----NSKYIRLWKFNYSD 427 (430)
Q Consensus 388 ~~~~~-------~~h~~~v~~v~~--~~~~l-~t~~----~Dg~v~vw~~~~~~ 427 (430)
+..++ ..-...+..+.| +|+.+ ++.. .++.|.|+|.++.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 487 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 11111 011245778888 57665 4432 37999999988865
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=1.9e-14 Score=126.94 Aligned_cols=237 Identities=7% Similarity=0.095 Sum_probs=163.6
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-------CceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------NAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+|-..+.++++ +++ ++++...++.|.+||.. ++.+..+... ..+..++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-------------------- 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-------------------- 85 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE--------------------
Confidence 45567888998 456 66666788999999977 5555544321 011122221
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
..+..++++.. ++.|.+|| .+++.+..+.. +...+..++++++ +++++...++.|
T Consensus 86 --------------------~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 144 (286)
T 1q7f_A 86 --------------------RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 144 (286)
T ss_dssp --------------------TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred --------------------cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEE
Confidence 11222344432 77888888 46666666542 3456889999976 666666778999
Q ss_pred EEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEEeeCCCCeE
Q 014104 257 AISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~~~~l 333 (430)
.+||.. ++.+..+.. .+...+..++++|+|+++++...++.|++||.. ++.+..+..+ ...+.+++ ++++|+++
T Consensus 145 ~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~-~d~~G~l~ 221 (286)
T 1q7f_A 145 IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG-INSNGEIL 221 (286)
T ss_dssp EEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE-ECTTCCEE
T ss_pred EEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE-ECCCCCEE
Confidence 999964 666666642 134478999999999988887788999999975 5555555433 35688898 99999988
Q ss_pred EEEcCCC-eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 334 VVGGIDG-VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 334 ~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
++...++ .|.+||. +++.+..+..+.. ...+.++++ +|++++
T Consensus 222 v~~~~~~~~i~~~~~-~g~~~~~~~~~~~----------------------------------~~~~~~i~~~~~g~l~v 266 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQ-DGQLISALESKVK----------------------------------HAQCFDVALMDDGSVVL 266 (286)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSC----------------------------------CSCEEEEEEETTTEEEE
T ss_pred EEeCCCCEEEEEECC-CCCEEEEEcccCC----------------------------------CCcceeEEECCCCcEEE
Confidence 8888776 9999995 4777777765322 123567777 477677
Q ss_pred EeeCCCeEEEEEecCCC
Q 014104 411 TTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 411 t~~~Dg~v~vw~~~~~~ 427 (430)
+ +.|++|++|++....
T Consensus 267 s-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 267 A-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp E-ETTTEEEEEECSCCC
T ss_pred E-CCCCeEEEEEccccc
Confidence 6 679999999987654
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=6.7e-16 Score=142.83 Aligned_cols=243 Identities=12% Similarity=-0.023 Sum_probs=156.2
Q ss_pred eEEEEeccccc-----eeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeE-EEEecCCCEEE-EEeC
Q 014104 104 DIDQWKAHSVG-----VDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG 171 (430)
Q Consensus 104 ~~~~l~~h~~~-----v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~ 171 (430)
.+..+..+... +..++| ++| +|+.+... ..|.+||+.+++.......+..... ..|+||++.|+ ++.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 101 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE 101 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC
Confidence 45566655443 677788 566 66655432 4788889998876655444433333 78999999998 7778
Q ss_pred CeEEEEEcCCCccc--ccCCCCceeee------------------eEEEEcCCceEEE-----ecCCeEEEEECCCCeee
Q 014104 172 TRICIWRRNGLRSV--FPSREGTFMKG------------------LCMRYFDPEAVVG-----CEDGTARVFDMYSRKCS 226 (430)
Q Consensus 172 ~~i~vwd~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~ 226 (430)
+.+.+||+.+++.. ...+....... ..+.+++..++.+ ..+..|.+||+.+++..
T Consensus 102 ~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 102 LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence 89999999887632 22222211010 1112223333322 35678999999888765
Q ss_pred EEeecCCCCeEEEEecC-C-CEEEEEeCC------CeEEEEeCCCCceeEEEecCC-CCCeEEEEEecCCCEEEEEeCC-
Q 014104 227 QIIRMHCAPVTSLSLSE-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTD-CTGIKTLCYNPCSRLVFAGTTA- 296 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~-~-~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d- 296 (430)
... .+...+..+.|+| + ..++..+.+ ..|.+||+..++. ..+.... ...+..+.|+|+|+.|+.++.+
T Consensus 182 ~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 182 VIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred eec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 544 4667889999998 4 556555433 4688999876543 3333212 2257889999999987766543
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CCCeEEEEc----------------CCCeEEEEEcCCCce
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DTSTLVVGG----------------IDGVLRVLDQNTGEV 352 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~----------------~dg~i~vwd~~~~~~ 352 (430)
+.|++||+.+++...... ... .. +. |+| +|+++++++ .++.|++||+.+++.
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~-~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMV-MPP-CS-HL-MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEE-CCS-EE-EE-EECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCccceEEEEECCCCCeEEeee-CCC-CC-CC-ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 459999998876543222 112 22 65 889 999888754 347899999987764
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=3.4e-15 Score=130.59 Aligned_cols=234 Identities=11% Similarity=0.050 Sum_probs=174.2
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC--ceeee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG--TFMKG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~--~~~~~ 196 (430)
|++.|++++.|+.|.+||.++|+.+.++..+. ....+.++|+|+.++ +.++.|..||. +++.+.....+ .....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 34489999999999999999999999998764 567789999999888 66888999999 66654433322 22333
Q ss_pred eEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecC------CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeE
Q 014104 197 LCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMH------CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
....+++..+++.+. ++.|..+|. +|+.+..+... ......+.+.++ +++++...++.|..||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 444456666777776 788888886 78877766521 123444556654 889999999999999988 99999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC------CceEEEEEeeCCCCeEEEEc--CC-
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP------NVVYSLQHLQNDTSTLVVGG--ID- 339 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~l~~~s~~~~~l~s~~--~d- 339 (430)
++.. ...+.++.+.++|+.++++..++.|..+|..+++.+.++..+. ..+.++. ..++|..+++.. ..
T Consensus 160 ~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 160 SVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF-PLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE-ECTTSCEEEEEECTTCT
T ss_pred EEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce-EcCCCCEEEEeccCccc
Confidence 9985 3456778889999999998888899999999999998886432 2367777 778998887773 11
Q ss_pred -----CeEEEEEc-CCCceEEEEEeccC
Q 014104 340 -----GVLRVLDQ-NTGEVLSRCVMDIG 361 (430)
Q Consensus 340 -----g~i~vwd~-~~~~~~~~~~~~~~ 361 (430)
+..+++++ .+|+.+.++.....
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred cccccCCceEEEECCCCCEEEEecCccc
Confidence 23456666 56888887765443
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.8e-15 Score=137.95 Aligned_cols=254 Identities=9% Similarity=-0.008 Sum_probs=175.6
Q ss_pred CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccC--C-----CC
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPS--R-----EG 191 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~--~-----~~ 191 (430)
.|+.|.+||..+++.+..+...... .++++||+++++ +. .++.|.+||..+.+.+... . .+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 4789999999999998888876555 899999999998 43 2567999999887643221 1 11
Q ss_pred ceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC-Cc
Q 014104 192 TFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQ 265 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~-~~ 265 (430)
.....+.+.+++..++++.. ++.|.+||+.+++.+.. +.. .+ ...+.+.|. ..+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 22345777788888888764 58999999999988877 542 22 233445553 5788889999999999865 55
Q ss_pred eeEEEec----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeec------CC----CceEEEEEeeCC
Q 014104 266 RVATLRS----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRI------SP----NVVYSLQHLQND 329 (430)
Q Consensus 266 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~~----~~v~~l~~~s~~ 329 (430)
....... ........+.++|++..++..+.++.|.++|+...... ..+.. +. .....++ ++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a-~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG-LHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE-EETT
T ss_pred EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE-EecC
Confidence 4422210 01112223445788888888888999999998754321 11110 00 1111256 8999
Q ss_pred CCeEEEEcC-----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 330 TSTLVVGGI-----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 330 ~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
++.++++.. .+.|.+||+.+++.+.++..+.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------------------------------------- 306 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------------------------------------- 306 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--------------------------------------
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--------------------------------------
Confidence 888876643 3589999999999999887522
Q ss_pred eeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 399 ITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 399 v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..+++| ||++|++++. +.|.+||..++
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 555666 5777887776 99999999987
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=4.5e-15 Score=133.61 Aligned_cols=254 Identities=10% Similarity=-0.030 Sum_probs=174.7
Q ss_pred CCCeEEEEecCCCeeEEeeec-------CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 130 GDKVMRLWSLEGYKCVEEYSL-------PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
.+++|.++|.++++....+.. ......+.+ ++..+. ...++.|.+||.++++.+...........+++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 388999999999987765521 122334555 344444 445789999999988754333223333445555
Q ss_pred EcCCceEEEe-cCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeEEEec
Q 014104 201 YFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGS--SLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 201 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+.+ .++++. .++.|.+||..+++....+.... .....+++ .++.++.+. .++.|.++|+.+++.+..+..
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 555 555555 78999999999998887776433 14456777 444444444 488999999999998888874
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC----------CeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCe
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTA----------GYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
......++++|+|++++++..+ +.|.++|..+++....+.... .....++ ++|+++.|+++.. .
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la-~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ-LNGTRDTLYWINN--D 245 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE-ECTTSCEEEEESS--S
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEE-EecCCCEEEEEcc--E
Confidence 3456789999999977766554 789999999988776665432 3678898 9999999988765 8
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEe----eC
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTT----HN 414 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~----~~ 414 (430)
|.+||+.+++....... ..+.....+++++ +..+++. ..
T Consensus 246 v~~~d~~t~~~~~~~~~----------------------------------~~~~~~p~gi~vdp~~g~lyva~~~~y~~ 291 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFL----------------------------------EFRDTKYYGLTVNPNNGEVYVADAIDYQQ 291 (328)
T ss_dssp EEEEETTCSSCCSSCSB----------------------------------CCCSSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred EEEEECCCCceeeeeee----------------------------------cCCCCceEEEEEcCCCCeEEEEccccccc
Confidence 99999987765310000 0001346677773 4556666 67
Q ss_pred CCeEEEEEecCCC
Q 014104 415 SKYIRLWKFNYSD 427 (430)
Q Consensus 415 Dg~v~vw~~~~~~ 427 (430)
++.|.+||.+ ++
T Consensus 292 ~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 292 QGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEEEEECTT-CC
T ss_pred CCEEEEECCC-CC
Confidence 8899999987 54
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=6.1e-15 Score=133.92 Aligned_cols=253 Identities=12% Similarity=0.026 Sum_probs=165.9
Q ss_pred ceeEEEecCC-eEEEE---------eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---C--eEEEE
Q 014104 114 GVDQCRMKRG-LILTG---------VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---T--RICIW 177 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~--~i~vw 177 (430)
.+....+ +| +++.. +.++.|.+||+.+++... + ..+....|+|||+.|+ .+.+ + .|.+|
T Consensus 16 ~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 16 YLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred EcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 3455566 55 54443 235789999999876543 3 3566789999999988 4432 3 37888
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEec---------------------------CCeEEEEECCCCeeeEEee
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE---------------------------DGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------------dg~i~vwd~~~~~~~~~~~ 230 (430)
++++++......... .....+++++..|+.++. ...|.+||+.+++.+..+.
T Consensus 91 ~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 91 DLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp ETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 888776432221122 455667777777777663 2579999999888745555
Q ss_pred cCCCCeEEEEecCCCEEEEEeCC---------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----
Q 014104 231 MHCAPVTSLSLSEDQLIISGSSL---------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA----- 296 (430)
Q Consensus 231 ~~~~~i~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 296 (430)
. . .+..+.|+|+.+++++..+ ..|.++| +++. ..+.. + ..+..+ +|+|+.|+.++.+
T Consensus 170 ~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~ 240 (347)
T 2gop_A 170 K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFE-K-VSFYAV--DSDGERILLYGKPEKKYM 240 (347)
T ss_dssp E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEE-E-ESEEEE--EECSSCEEEEECCSSSCC
T ss_pred C-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEecc-C-cceeeE--CCCCCEEEEEEccccCCc
Confidence 4 3 7889999987655555443 2455555 5544 44443 3 445544 9999988876643
Q ss_pred ---CeEEEEeCCCCceeeeeecCCCceEE-EEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 297 ---GYASCWDLRTMKSLWETRISPNVVYS-LQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 297 ---g~i~i~d~~~~~~~~~~~~~~~~v~~-l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
..|.+|| +++.......+...+.. +. |+ ++ ++++++.++.+++| +.+++.. .+..+
T Consensus 241 ~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~-~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~------------- 300 (347)
T 2gop_A 241 SEHNKLYIYD--GKEVMGILDEVDRGVGQAKI-KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG------------- 300 (347)
T ss_dssp CSSCEEEEEC--SSCEEESSTTCCSEEEEEEE-ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-------------
T ss_pred cccceEEEEC--CCceEeccccCCcccCCccE-Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-------------
Confidence 4688888 56554444556677776 76 88 88 88999999999999 8766543 22221
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeE-EEEEec
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYI-RLWKFN 424 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v-~vw~~~ 424 (430)
...|.++++++..+++++.++.. .+|.++
T Consensus 301 -----------------------~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 -----------------------RHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -----------------------SSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -----------------------CCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 23567777755556777777765 788775
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=9.8e-15 Score=134.68 Aligned_cols=214 Identities=12% Similarity=0.011 Sum_probs=147.9
Q ss_pred EEecCCCeeEEeeecCCc-eeE-----EEEecCCCEEE-EEe-CC--eEEEEEcCCCcccccCCC-CceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEYSLPNA-ASL-----VDFDFDESKIV-GLI-GT--RICIWRRNGLRSVFPSRE-GTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~-~~~-~~--~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~ 204 (430)
.+|..++..+..+..+.. ... .+|+|||+.|+ ++. ++ .|.+||+++++....... ........+++++.
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 346677777777665432 222 67999999988 554 55 488899988874332222 22222357888888
Q ss_pred ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe--cCC-CEEEE----------------------EeCCCeEEEE
Q 014104 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL--SED-QLIIS----------------------GSSLGSIAIS 259 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~--~~~-~~l~~----------------------~~~dg~i~vw 259 (430)
.|+.++.++.|++||+.+++....+..+...+....+ +++ ..++. ...+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 8999999999999999999877777666665544443 565 55542 2245789999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCceeeeeecCC--CceEEEEEeeCCC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTA------GYASCWDLRTMKSLWETRISP--NVVYSLQHLQNDT 330 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~ 330 (430)
|+.+++...... +...+..+.|+| +|+.|+....+ ..|.++|...++. ..+..+. ..+.... |+|||
T Consensus 174 d~~~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~-~spdg 249 (388)
T 3pe7_A 174 DLKTGESTVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEF-WVPDG 249 (388)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEE-ECTTS
T ss_pred ECCCCceEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccce-ECCCC
Confidence 999987655444 455789999999 99988876653 3688888875543 3343343 3577777 99999
Q ss_pred CeEEEEcC-C----CeEEEEEcCCCceE
Q 014104 331 STLVVGGI-D----GVLRVLDQNTGEVL 353 (430)
Q Consensus 331 ~~l~s~~~-d----g~i~vwd~~~~~~~ 353 (430)
+.|+..+. + ..|++||+.+++..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceE
Confidence 98765443 2 24999999988753
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=5e-15 Score=148.34 Aligned_cols=194 Identities=7% Similarity=-0.053 Sum_probs=139.3
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCCCCce--eee--eEEEEcCCceEEEecC---------CeEEEE
Q 014104 154 ASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREGTF--MKG--LCMRYFDPEAVVGCED---------GTARVF 218 (430)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~--~~~--~~~~~~~~~l~~~~~d---------g~i~vw 218 (430)
...+.|++|+++++.+ ++.|.+||+.+++. ++..+.... ... ..+++++..|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4568999999888765 99999999998874 233332211 112 5778888888888876 567799
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCe-----------------EE
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGI-----------------KT 280 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~ 280 (430)
|+.+++.. .+..|.+.+...+|+|+ +.|+.+ .++.|++||+.+++..+.....+...+ ..
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998765 46667788999999987 677776 478999999988775543222122222 35
Q ss_pred EEEecCCCEEEEEeCCC------------------------------------eEEEEeCCC---Cc--eeeeee-----
Q 014104 281 LCYNPCSRLVFAGTTAG------------------------------------YASCWDLRT---MK--SLWETR----- 314 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~----- 314 (430)
+.|||||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 89999999999774221 588899988 73 222333
Q ss_pred -cCCCceEEEEEeeCCCCeEEEEc----CCCeEEEEEcCCCc
Q 014104 315 -ISPNVVYSLQHLQNDTSTLVVGG----IDGVLRVLDQNTGE 351 (430)
Q Consensus 315 -~~~~~v~~l~~~s~~~~~l~s~~----~dg~i~vwd~~~~~ 351 (430)
+|...+..++ |+|||+.++... .+..|++||+.+++
T Consensus 256 ~~~~~~~~~~~-wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 256 LIGDHYLCDVT-WATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HTSCEEEEEEE-EEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCeEEEEEE-EeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 3677888998 999999766553 23479999999887
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=6.3e-12 Score=111.18 Aligned_cols=239 Identities=9% Similarity=-0.027 Sum_probs=157.8
Q ss_pred EEEeccccceeEEEe-cCCeEEEEe-CCCeEEEEecCCCeeEEeee---cCCceeEEEEecCCCEEEEEe-CCeEEEEEc
Q 014104 106 DQWKAHSVGVDQCRM-KRGLILTGV-GDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIVGLI-GTRICIWRR 179 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-~~~i~vwd~ 179 (430)
..+..+...+.++++ ++|.+..+. .++.|.+||.. ++.. .+. ....+..+++++++..+++.. ++.|..||.
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 345566678999998 466444444 47899999988 5543 333 224566788999998877655 788999998
Q ss_pred CCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 180 NGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+.....+... .......+++.+.+...++...++.|..||. +++.... ...+...+..+++.++ .+.++...++.|
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 7433222221 1222222333333333444556789999998 5554322 2234457889999876 555555667899
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEeeCCCCeEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
..||. +++............+..++++++|++.++...++.|.+||. +++.... ...+...+.+++ ++++|...++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~~~~g~l~v~ 241 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT-AGAGIDLWFT 241 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECSTTCEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE-ECCCCCEEEe
Confidence 99998 666544312213456889999999997777667889999999 6654321 233446788998 9999987777
Q ss_pred EcCCCeEEEEEcCCCc
Q 014104 336 GGIDGVLRVLDQNTGE 351 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~ 351 (430)
...++.|..||. +++
T Consensus 242 ~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNI 256 (299)
T ss_dssp ETTTTEEEEEET-TTE
T ss_pred ccCCceEEEECC-CCc
Confidence 767889999998 453
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.2e-14 Score=134.25 Aligned_cols=216 Identities=8% Similarity=-0.115 Sum_probs=144.2
Q ss_pred EEecCCCeeEEeeecCCc------eeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEYSLPNA------ASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (430)
..|..+++.+..+..+.. ...++|+|||+.|+ .... ..+.+||+.+++...... .........+++++.
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 447778777766654322 34578999999988 4332 368889998876432222 222222356788888
Q ss_pred ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-------------------EEecCC-CEEEEE-----eCCCeEEEE
Q 014104 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-------------------LSLSED-QLIISG-----SSLGSIAIS 259 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-------------------~~~~~~-~~l~~~-----~~dg~i~vw 259 (430)
.|+.++.++.|++||+.+++.......+...... +.++|+ +.++.+ ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 8999999999999999988776655544442222 234444 333332 456789999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCceeeeeecC-CCceEEEEEeeCCCC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTA------GYASCWDLRTMKSLWETRIS-PNVVYSLQHLQNDTS 331 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~s~~~~ 331 (430)
|+.+++...... +...+..+.|+| +++.|+..+.+ ..|.+||+..++........ ...+..+. |+|+|+
T Consensus 174 d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~spdg~ 250 (396)
T 3c5m_A 174 DIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF-WIPDGS 250 (396)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE-ECTTSS
T ss_pred ECCCCcEEeecc--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE-ECCCCC
Confidence 999887765554 456789999999 78877765543 36889998765433222211 23577787 999999
Q ss_pred eEEEEcCC-----CeEEEEEcCCCceEE
Q 014104 332 TLVVGGID-----GVLRVLDQNTGEVLS 354 (430)
Q Consensus 332 ~l~s~~~d-----g~i~vwd~~~~~~~~ 354 (430)
+|+.++.+ +.|++||+.+++...
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEE
Confidence 88777543 459999999887543
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.9e-13 Score=135.39 Aligned_cols=246 Identities=10% Similarity=-0.030 Sum_probs=160.3
Q ss_pred eEEEEecccccee---------EEEe---cCC-e-EEEEeC-CCeEEEEecC--C-CeeEEeeec------CCceeEEEE
Q 014104 104 DIDQWKAHSVGVD---------QCRM---KRG-L-ILTGVG-DKVMRLWSLE--G-YKCVEEYSL------PNAASLVDF 159 (430)
Q Consensus 104 ~~~~l~~h~~~v~---------~~~~---~~~-~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~------~~~~~~~~~ 159 (430)
..+.+.+|...+. ...+ ||| + |+.++. +..|.++++. + ++. ..+.. ......++|
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEE
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEE
Confidence 3455666765555 4433 556 6 665544 5667777766 3 443 33332 223556899
Q ss_pred ecCCCEEE-EEeC----------CeEEEEEcCC------CcccccC-CCCceeeeeEEEEcCCceEEEecC--------C
Q 014104 160 DFDESKIV-GLIG----------TRICIWRRNG------LRSVFPS-REGTFMKGLCMRYFDPEAVVGCED--------G 213 (430)
Q Consensus 160 ~~~~~~l~-~~~~----------~~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d--------g 213 (430)
+|||+.|+ ++.+ ..|.+||+++ ++..... ..........+++++..|+.++.+ .
T Consensus 138 spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 138 LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence 99999998 5554 5799999988 5432222 222344556788888888877754 4
Q ss_pred eEEEEECC-CC---eeeEEeecCCCCeEEEEecCC-CEEEEEeCCC--eEEEEeCCCCceeEEEecCCCCC--------e
Q 014104 214 TARVFDMY-SR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLG--SIAISGLSSDQRVATLRSTDCTG--------I 278 (430)
Q Consensus 214 ~i~vwd~~-~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~--------v 278 (430)
.|.+||+. ++ +.......|...+..+.|+|+ ++++++..++ .|.+||+.+++....... +... +
T Consensus 218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~p~w~~~~ 296 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-EEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-SSBSSCCCCSTTC
T ss_pred EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-cccccCccccccC
Confidence 79999998 56 444445556788999999976 6777777777 777788767765433332 2211 5
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEE--eCCCCceeeeeecCCCceEEE-EEeeCCCCeEEEEcCCC--eEEEEEcCCCceE
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCW--DLRTMKSLWETRISPNVVYSL-QHLQNDTSTLVVGGIDG--VLRVLDQNTGEVL 353 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~l-~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~ 353 (430)
..++|+|++++++++.. +.+++| |+.+++ +..+..|...+..+ . ++.+.-++++++.+. .|.++|+.+++..
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLT-VSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEE-EETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEe-cCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 67899999999999988 988998 555554 56777777777766 4 433333344445554 4666677777654
Q ss_pred E
Q 014104 354 S 354 (430)
Q Consensus 354 ~ 354 (430)
.
T Consensus 374 ~ 374 (662)
T 3azo_A 374 T 374 (662)
T ss_dssp E
T ss_pred E
Confidence 3
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=1.7e-13 Score=136.72 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=164.5
Q ss_pred cccceeEEEe-cCC-eEEEEeCCC-----eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCe---------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTR--------- 173 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--------- 173 (430)
|...+..++| ||| +|+.++.++ .|++||+.+++.+.....+.....++|+||++.|+ ++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 4445777888 566 676655433 89999999998776433322345699999999988 666554
Q ss_pred -------EEEEEcCCCcc----cccCCC-CceeeeeEEEEcCCceEEEec-----CCeEEEEECCC------Ce-eeEEe
Q 014104 174 -------ICIWRRNGLRS----VFPSRE-GTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYS------RK-CSQII 229 (430)
Q Consensus 174 -------i~vwd~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~ 229 (430)
|.+|++.+++. ++.... ........+++++..|+.++. +..|.+||+.+ +. ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999988762 222221 222344667777777776654 56899999976 43 45666
Q ss_pred ecCCCCeEEEEecC-CCEEEEEeC----CCeEEEEeCCCCce--eEEEecCCC-CCeEEEEEecCCCEEEEEeCCCe--E
Q 014104 230 RMHCAPVTSLSLSE-DQLIISGSS----LGSIAISGLSSDQR--VATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGY--A 299 (430)
Q Consensus 230 ~~~~~~i~~~~~~~-~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~--i 299 (430)
..+...+... |++ ++.++..+. .+.|.+||+.++.. ...+..+.. ..+..+.|++++.++++...++. |
T Consensus 283 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 283 IDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 6666666554 554 455555443 23699999987642 344444233 26888999977788888888884 6
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE-c---CCCeEEEEEcCCCc
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG-G---IDGVLRVLDQNTGE 351 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~-~---~dg~i~vwd~~~~~ 351 (430)
.+||+.+++.+..+..+.+.+..+. ++|++..++.. + ..+.|++||+.+++
T Consensus 362 ~~~~~~~g~~~~~l~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATGALLKIFPLEVGSVVGYS-GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTCCEEEEECCCSSEEEEEE-CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCCCEEEecCCCCceEEEEe-cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6678767887777877778888888 89998766533 2 45789999999887
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=3.4e-13 Score=119.51 Aligned_cols=243 Identities=11% Similarity=-0.004 Sum_probs=167.9
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEe-CC
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLI-GT 172 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~ 172 (430)
+......+..+..+.....+++| +++ +++++..++.|..||..++ ...+..+ ..+..++++++++.+++.. ++
T Consensus 13 ~~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 13 LFPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp GSCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred hcCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCC
Confidence 34445566677777788889999 444 6778888999999999887 5555544 4566799999999877554 58
Q ss_pred eEEEEEcCCCccc-cc-CCCCc---eeeeeEEEEcCCceEE----Ee-------------cCCeEEEEECCCCeeeEEee
Q 014104 173 RICIWRRNGLRSV-FP-SREGT---FMKGLCMRYFDPEAVV----GC-------------EDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~ 230 (430)
.|.+||..+++.. +. ..... ....+++.+.+..+++ |+ ..+.|..++.. ++ +..+.
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI 168 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence 9999999766532 11 11111 1123445555544554 22 13467777765 44 34445
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC-CCce---eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS-SDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
.+......++|+|+ +.+++.+.++.|.+||+. +++. ...+ ......+..++++++|+++++. ++.|.+||..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 56677899999976 666777788999999987 5554 3344 3245567889999999866665 7889999987
Q ss_pred CCceeeeeecCCCceEEEEEe-eCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 306 TMKSLWETRISPNVVYSLQHL-QNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~-s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
++.+..+..+.. +.+++ | +|+++.|++++.+ .+.-++..+.+
T Consensus 246 -g~~~~~~~~~~~-~~~~~-f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 246 -GDELGRVLTPQT-TSNLC-FGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp -SCEEEEEECSSC-CCEEE-EESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred -CCEEEEEECCCC-ceeEE-EECCCCCEEEEEcCC-eEEEEEccccc
Confidence 777778877766 88888 7 6899988888766 45555666544
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=3.3e-13 Score=134.62 Aligned_cols=205 Identities=11% Similarity=0.006 Sum_probs=140.9
Q ss_pred eeEEEEecCCCEEE-EEe-CC----eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe-------------
Q 014104 154 ASLVDFDFDESKIV-GLI-GT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT------------- 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~-~~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------- 214 (430)
....+|+|||+.|+ +.. +| .|++||+++++...............|++++..|+.++.++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 45689999999998 443 33 899999999875432111111344778888888888887765
Q ss_pred ---EEEEECCCCee--eEEee--cCCCCeEEEEecCC-CEEEEEeC-----CCeEEEEeCCC------Cc-eeEEEecCC
Q 014104 215 ---ARVFDMYSRKC--SQIIR--MHCAPVTSLSLSED-QLIISGSS-----LGSIAISGLSS------DQ-RVATLRSTD 274 (430)
Q Consensus 215 ---i~vwd~~~~~~--~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~ 274 (430)
|++|++.+++. ...+. .|...+..+.|+|+ ++++.++. +..|.+||+.+ +. ....+.. +
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~ 285 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-N 285 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-S
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC-C
Confidence 99999988763 22223 24556789999986 66766654 57899999986 43 3555654 4
Q ss_pred CCCeEEEEEecCCCEEEEEeCC----CeEEEEeCCCCce--eeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCe--EEE
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTA----GYASCWDLRTMKS--LWETRISPN--VVYSLQHLQNDTSTLVVGGIDGV--LRV 344 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~--i~v 344 (430)
...+.. .|+|+|+.|+..+.. +.|.+||+.+++. ...+..|.. .+..+. +++++.++++...++. |.+
T Consensus 286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE-EETTTEEEEEEEETTEEEEEE
T ss_pred CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE-EEcCCEEEEEEEECCEEEEEE
Confidence 444444 588999887766543 3699999987642 344555543 677787 7777888888888874 666
Q ss_pred EEcCCCceEEEEEeccC
Q 014104 345 LDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~ 361 (430)
||+.+|+.+..+..+..
T Consensus 364 ~~~~~g~~~~~l~~~~~ 380 (710)
T 2xdw_A 364 HDLATGALLKIFPLEVG 380 (710)
T ss_dssp EETTTCCEEEEECCCSS
T ss_pred EECCCCCEEEecCCCCc
Confidence 78767887777765543
No 184
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=5.4e-12 Score=115.13 Aligned_cols=251 Identities=5% Similarity=-0.066 Sum_probs=170.3
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE-----------eCCeEEEEEcCCCcccccCCC--------Cce
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL-----------IGTRICIWRRNGLRSVFPSRE--------GTF 193 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~i~vwd~~~~~~~~~~~~--------~~~ 193 (430)
+|.++|..+++.+.++...... .++++||++.++.+ .++.|.+||..+.+.+..... +..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 8899999999999888765555 89999999999843 257899999987664322111 112
Q ss_pred eeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEE-eecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 194 MKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
...+.+++++..+++++. ++.|.++| .+++.+.. +.. .+. +.+.| ...+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 235678888888888774 57899999 99988877 642 222 33333 256677788999999999 887764
Q ss_pred EEec----CCCCC-eEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeeeeecC----------CCceEEEEEeeCCCC
Q 014104 269 TLRS----TDCTG-IKTLCYNPCSRLVFAGTTAGYASCWDLRTMK--SLWETRIS----------PNVVYSLQHLQNDTS 331 (430)
Q Consensus 269 ~~~~----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----------~~~v~~l~~~s~~~~ 331 (430)
.... ....+ .....+.+++..++..+..+.+.+.|+..+. .+..+... ......+. ++|+++
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~-~s~d~~ 279 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA-YLKSSD 279 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE-ECCCCC
Confidence 3320 01112 2334566766655544577899999997542 22222211 12233466 899999
Q ss_pred eEEEEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 332 TLVVGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 332 ~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
.++++.. ++.|.++|+.+++.+.++.... ...+
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-------------------------------------~p~~ 322 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-------------------------------------DVDA 322 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-------------------------------------CcCe
Confidence 8877643 3589999999999999886422 2455
Q ss_pred EEE--cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 402 LAV--GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 402 v~~--~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
++| ||+ +++++. .++.|.|||..+++.
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 555 566 566666 589999999988764
No 185
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.62 E-value=1.3e-12 Score=119.96 Aligned_cols=262 Identities=11% Similarity=0.054 Sum_probs=177.1
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceee--
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMK-- 195 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-- 195 (430)
+...++.++.++.++.|..+|..+|+.+..+.............++..++++.++.+..+|.++++..+.........
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 344677888899999999999999999887776543322112234544558889999999999887654432221110
Q ss_pred --eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC----eEE---EEec---CCCEEEEEeCCCeEEEEeCCC
Q 014104 196 --GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP----VTS---LSLS---EDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 196 --~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----i~~---~~~~---~~~~l~~~~~dg~i~vwd~~~ 263 (430)
.......+..+++++.++.+..+|..+++.+......... +.. +... .+..++.++.++.+..+|..+
T Consensus 179 ~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 179 RGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred cCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 0111223556888888999999999999988776532110 000 1111 246788888899999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
++.+..... .....+.. ++..++.++.++.+..+|..+++.+..... ....+.... . .+..|+.++.+|.|
T Consensus 259 G~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 259 GQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV-L--YNGNLVVGDSEGYL 330 (376)
T ss_dssp CCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE-E--ETTEEEEECTTSEE
T ss_pred CcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE-E--ECCEEEEEeCCCeE
Confidence 998877653 23444444 466788888899999999999998877652 222233333 2 35678889999999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
+++|..+|+.+......... ........+..|+.++.||.|..|+
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSG-----------------------------------FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEETTTCCEEEEEECCTTC-----------------------------------BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCc-----------------------------------ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 99999999998877642220 1112233456678888999998886
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=4.4e-13 Score=116.94 Aligned_cols=236 Identities=7% Similarity=-0.040 Sum_probs=155.5
Q ss_pred ceeEEEe-cCC-eEE-EEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC-
Q 014104 114 GVDQCRM-KRG-LIL-TGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS- 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~- 188 (430)
...++++ +++ +++ +...++.|.+||..+........ .......++++++++.+++..++.|.+||.++.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence 5677888 556 444 43678999999977654332211 224566799999998666655889999998876533221
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
........+++.+.+..+++...++.|.+|+..+.............+..++++++ +++++...++.|.+||.......
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 11122233444444443555566789999986555433222223346788999865 66666666789999998876544
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 268 ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 268 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
..... ....+.+++++++|.++++...++.|.+||............+...+.+++ ++++|+++++...++.|+++++
T Consensus 185 ~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 185 VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp ECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEE-ECTTCCEEEEEGGGTEEEEECC
T ss_pred eeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEE-ECCCCCEEEEECCCCEEEEEcC
Confidence 33222 335789999999998777777788999999876543332223335688998 9999998888889999999998
Q ss_pred CCCc
Q 014104 348 NTGE 351 (430)
Q Consensus 348 ~~~~ 351 (430)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7544
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=6.3e-13 Score=119.84 Aligned_cols=238 Identities=10% Similarity=0.017 Sum_probs=153.9
Q ss_pred cceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 113 ~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..|.++.|+ +. .++..+.++.++.| .++....+..+ .....++|+++++.++ +..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346777774 33 55666778888888 33455555443 4556788999998766 456788999999877633211
Q ss_pred -CCCceeeeeEEEEcCCceEEEecC----CeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeC------CC
Q 014104 189 -REGTFMKGLCMRYFDPEAVVGCED----GTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSS------LG 254 (430)
Q Consensus 189 -~~~~~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~------dg 254 (430)
........+++.+.+..+++...+ +.|.+||..+++....+. .+...+.+++++|+ .++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 122223334444444435554455 589999998776543332 23457899999976 55554433 35
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC-Cceeee--------eecCCCceEEEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT-MKSLWE--------TRISPNVVYSLQ 324 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~--------~~~~~~~v~~l~ 324 (430)
.|..+|..+++...... ....+..++|+|+|+.|+ +...++.|.+||+.+ +..+.. +.++ ..+..++
T Consensus 163 ~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred eEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 67777776555433322 233578999999998665 445678999999964 333221 1122 4677887
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++++|.++++...++.|.+||. +++.+..+..
T Consensus 240 -~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 240 -IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp -EBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred -ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 9999998888777899999998 4777776653
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=1.1e-13 Score=137.52 Aligned_cols=244 Identities=8% Similarity=-0.027 Sum_probs=162.1
Q ss_pred ccccceeEEEe-cCC-eEE-----EEeCCCeEEEEecCCCeeE-EeeecCCceeEEEEecCCCEEE-EEeCCe-------
Q 014104 110 AHSVGVDQCRM-KRG-LIL-----TGVGDKVMRLWSLEGYKCV-EEYSLPNAASLVDFDFDESKIV-GLIGTR------- 173 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~-----s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~------- 173 (430)
+|...+..++| ||| +|+ +|+.+.+|++||+.+++.+ ...........++|+|||+.|+ ++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 45556888888 566 666 3444578999999998865 2211111125689999999988 666554
Q ss_pred ------EEEEEcCCCcc----cccCCCC-ceeeeeEEEEcCCceEEEecCC----eEEEEECCCCeeeEEeecCCCCeEE
Q 014104 174 ------ICIWRRNGLRS----VFPSREG-TFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKCSQIIRMHCAPVTS 238 (430)
Q Consensus 174 ------i~vwd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~ 238 (430)
|++|++.++.. ++..... .......+++++..++.++.++ .|.++|..+++. ..+..+...+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~ 276 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYE 276 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEE
Confidence 99999988762 2222222 2334566777787777777665 777887655543 445555566666
Q ss_pred EEecCCCEEEEEeC----CCeEEEEeCCCCce--eEEEecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCcee
Q 014104 239 LSLSEDQLIISGSS----LGSIAISGLSSDQR--VATLRSTD-CTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSL 310 (430)
Q Consensus 239 ~~~~~~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 310 (430)
..+++++ ++..+. ++.|.+||+.++.. ...+..++ ...+..++++ ++.++++...|+..++|.+. +++..
T Consensus 277 ~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 277 VHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 6666556 444443 58999999987753 23333323 4468888888 67788888899988887654 35555
Q ss_pred eeeecC-CCceEEEEEeeCCCCeEEEE----cCCCeEEEEEcCCCceEEEEEe
Q 014104 311 WETRIS-PNVVYSLQHLQNDTSTLVVG----GIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 311 ~~~~~~-~~~v~~l~~~s~~~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+..+ .+.+..+. ++|+++.++.. ...++|++||+.+++. ..+..
T Consensus 355 ~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~ 405 (695)
T 2bkl_A 355 RTVQLPGVGAASNLM-GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAK 405 (695)
T ss_dssp EECCCSSSSEECCCB-SCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEE
T ss_pred EEecCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEec
Confidence 566555 56777787 88999877632 2457899999998874 33443
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=4.9e-13 Score=116.65 Aligned_cols=236 Identities=8% Similarity=-0.047 Sum_probs=156.0
Q ss_pred ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 153 AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
....++++++++.++ + ..++.|.+|+..+........ .......+++...+. ++++..++.|.+||..+... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-eee
Confidence 566788999998766 5 457889999987655322211 111223344444444 55555588999999866543 333
Q ss_pred e-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 230 R-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 230 ~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
. .....+..++++++ .++++...++.|.+||..+......... ....+.+++++|+|+++++...++.|.+||....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 2 23357889999965 6666666788999998765544322222 2346789999999997777777889999998876
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
........+...+.+++ ++++|.++++...++.|.+||........ ..
T Consensus 182 ~~~~~~~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------------------------------ 229 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------------------------------ 229 (270)
T ss_dssp CEEECCCSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------------------------------
T ss_pred ceEeecccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCccee-ec------------------------------
Confidence 54433333336678898 99999877777788899999986543221 11
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+...+.++++ +|+.+++...++.|+++++...+.
T Consensus 230 -----~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 230 -----FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -----CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -----cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 011135678888 477888888999999999876653
No 190
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.60 E-value=2.2e-12 Score=118.40 Aligned_cols=267 Identities=11% Similarity=0.112 Sum_probs=176.8
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC---------ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN---------AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
....++.++.++.++.|..+|..+++.+..+.... .........++..++ ++.++.+..+|.++++..+.
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 34467788889999999999999999887777532 111222223444444 88899999999998886543
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe-----EEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-----TSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
........ ......+..+++++.++.|..+|..+|+.+.......... ...... +..++.++.++.+..+|..
T Consensus 129 ~~~~~~~~-~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 129 TKVAGEAL-SRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp EECSSCCC-SCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETT
T ss_pred EeCCCceE-cCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECC
Confidence 32221111 1112235568889999999999999999888776432211 111222 4578888889999999999
Q ss_pred CCceeEEEecCCCCC---------e-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 263 SDQRVATLRSTDCTG---------I-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
+++.+.......... + ....+ .+..++.++.++.+..+|.++++.+..... .....+. . ++..
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~-~--~~~~ 279 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI-V--DGNR 279 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE-E--ETTE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce-E--ECCE
Confidence 999988776321100 1 01111 346778888899999999999998876553 2344444 3 4667
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEe
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTT 412 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~ 412 (430)
++.++.++.|..+|..+|+.+........ ..+......+..|+.+
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-----------------------------------~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLLH-----------------------------------RLLTSPVLYNGNLVVG 324 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTTT-----------------------------------SCCCCCEEETTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccCC-----------------------------------CcccCCEEECCEEEEE
Confidence 88888899999999999998766542111 1122233345667777
Q ss_pred eCCCeEEEEEecCCCc
Q 014104 413 HNSKYIRLWKFNYSDK 428 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~~~ 428 (430)
+.+|.|.++|..+|+.
T Consensus 325 ~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRF 340 (376)
T ss_dssp CTTSEEEEEETTTCCE
T ss_pred eCCCeEEEEECCCCcE
Confidence 7788888888877753
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=8.2e-13 Score=131.36 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=139.7
Q ss_pred eeEEEEecCCCEEE-E-EeC----CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCe------------
Q 014104 154 ASLVDFDFDESKIV-G-LIG----TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGT------------ 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~-~~~----~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------ 214 (430)
....+|+|||+.|+ + ..+ ..|++||+++++.+ ............+|++++..|+.++.|..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 55689999999998 3 223 57999999998854 22111111145788888888888888766
Q ss_pred -EEEEECCCCe----eeEEeecCCCCeEEEEecCC-CEEEEEeCCC----eEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 215 -ARVFDMYSRK----CSQIIRMHCAPVTSLSLSED-QLIISGSSLG----SIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 215 -i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
|++|++.+++ .+.....+...+..+.|+|+ ++++.++.++ .|.+||..+++. ..+.. +...+....+
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~-~~~~~~~~~~- 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVK-GVGAKYEVHA- 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEE-CSSCCEEEEE-
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeec-CCCceEEEEe-
Confidence 9999998876 23333345567889999976 6676666555 778887665544 34443 3445556556
Q ss_pred cCCCEEEEEe---CCCeEEEEeCCCCce--eeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC-CCceEEEE
Q 014104 285 PCSRLVFAGT---TAGYASCWDLRTMKS--LWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN-TGEVLSRC 356 (430)
Q Consensus 285 ~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~ 356 (430)
++|.+++... .++.|.+||+.+++. ...+..+ ...+..+. ++ ++.++++...|+..++|.+. +++....+
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~-~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS-IV-GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE-EE-TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE-EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 5666444443 257899999987653 2333333 34577777 66 67788888899988888665 46656655
Q ss_pred Eec-cCcceeeeccCCc
Q 014104 357 VMD-IGSASSSSNKVSG 372 (430)
Q Consensus 357 ~~~-~~~~~~~~~s~d~ 372 (430)
..+ ...+..+++++|+
T Consensus 358 ~~~~~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 358 QLPGVGAASNLMGLEDL 374 (695)
T ss_dssp CCSSSSEECCCBSCTTC
T ss_pred cCCCCeEEEEeecCCCC
Confidence 543 2333334444444
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=2.6e-13 Score=118.61 Aligned_cols=148 Identities=10% Similarity=0.050 Sum_probs=121.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 283 (430)
+++++.++.|.+||.++|+.+..+..+. ..+.++.+.|+ ++++ +.++.|..||. +++.+..+.......+.++.+
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 8888999999999999999999998766 47888999977 6666 45788999998 899999998633457889999
Q ss_pred ecCCCEEEEEeC-CCeEEEEeCCCCceeeeeec------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 284 NPCSRLVFAGTT-AGYASCWDLRTMKSLWETRI------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 284 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|+|+.+++.+. ++.|..+|. +++.+.++.. +......+. ..++|.++++...++.|..||.. |+.+.++
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~-~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~ 161 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN-KNKKGNYLVPLFATSEVREIAPN-GQLLNSV 161 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-ECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-ECCCCCEEEEecCCCEEEEECCC-CCEEEEE
Confidence 999999999887 778888886 6777766542 112344455 78899999999999999999998 9999988
Q ss_pred Eec
Q 014104 357 VMD 359 (430)
Q Consensus 357 ~~~ 359 (430)
...
T Consensus 162 ~~~ 164 (276)
T 3no2_A 162 KLS 164 (276)
T ss_dssp ECS
T ss_pred ECC
Confidence 753
No 193
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.58 E-value=1.3e-12 Score=128.61 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=182.5
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce----------eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..++.++.++.++.|..+|..+|+.+..+...... .......++..++ ++.++.+..+|.++++.++..
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 35778888888999999999999999888754221 0111112344555 788999999999999866543
Q ss_pred CCC------ceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCC---------------------
Q 014104 189 REG------TFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAP--------------------- 235 (430)
Q Consensus 189 ~~~------~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~--------------------- 235 (430)
... ..... .....+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 322 11111 11123444666554 799999999999998877642211
Q ss_pred -----------eEEEEecCC-CEEEEEeCCC-------------------eEEEEeCCCCceeEEEecCCC--------C
Q 014104 236 -----------VTSLSLSED-QLIISGSSLG-------------------SIAISGLSSDQRVATLRSTDC--------T 276 (430)
Q Consensus 236 -----------i~~~~~~~~-~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~--------~ 276 (430)
...++++++ +.++.++.++ .|..+|..+|+.+..+...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 124667754 7777777654 599999999999988774221 1
Q ss_pred CeEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeeeecCC-----------Cce----------------------
Q 014104 277 GIKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWETRISP-----------NVV---------------------- 320 (430)
Q Consensus 277 ~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v---------------------- 320 (430)
...-+....+| ..++.++.+|.++++|.++++.+..+.... ..+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 23334444577 688899999999999999999887654221 001
Q ss_pred --EEEEEeeCCCCeEEEEcCC-------------------------------------------CeEEEEEcCCCceEEE
Q 014104 321 --YSLQHLQNDTSTLVVGGID-------------------------------------------GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 321 --~~l~~~s~~~~~l~s~~~d-------------------------------------------g~i~vwd~~~~~~~~~ 355 (430)
..++ ++|++.++++...+ |.|..||+.+|+.+.+
T Consensus 394 ~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMS-FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCE-EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCce-EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1355 78888888776432 6777888887877776
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee--EEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT--CLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.... ++. .+..++..++.++.||.+++||..+|+.+
T Consensus 473 ~~~~~-------------------------------------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 473 VEHVS-------------------------------------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEESS-------------------------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCC-------------------------------------CCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 65321 111 23446777888899999999999998764
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=4.1e-12 Score=112.48 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=133.5
Q ss_pred CceeEEEEecCCC-EEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 152 NAASLVDFDFDES-KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
.....++|+++++ .++ ...++.|..|+.+++...+... ......+.+.+.+..+++...++.|.+||..+++.....
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 4556799999999 344 6678999999999873233322 222333444444554555555689999999888754433
Q ss_pred ecC----CCCeEEEEecCC-CEEEE----Ee-------------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC
Q 014104 230 RMH----CAPVTSLSLSED-QLIIS----GS-------------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS 287 (430)
Q Consensus 230 ~~~----~~~i~~~~~~~~-~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 287 (430)
... ...+..++++|+ +++++ |+ ..+.|..+|.. ++. ..+.. ....+..++|+|+|
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~-~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR-DRVKPNGLAFLPSG 183 (296)
T ss_dssp CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC-CCSSEEEEEECTTS
T ss_pred eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec-CCCCCccEEECCCC
Confidence 221 234567899876 56665 33 13467777765 443 33333 45578999999999
Q ss_pred CEEEEEeCCCeEEEEeCC-CCce---eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 288 RLVFAGTTAGYASCWDLR-TMKS---LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+.+++.+.++.|.+||+. +++. ...+..+...+.+++ ++++|++.++. ++.|.+||.. ++.+..+..
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~-~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR-VDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE-EBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE-ECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 988777788999999987 4544 223333445667787 99999866666 7899999986 777777654
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=4.1e-12 Score=114.53 Aligned_cols=265 Identities=13% Similarity=0.042 Sum_probs=180.0
Q ss_pred cCC-eEEEEeC-----CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCc
Q 014104 121 KRG-LILTGVG-----DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLR 183 (430)
Q Consensus 121 ~~~-~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~ 183 (430)
|++ .++.... ++.|.+.|..+++.+.++....... +.++||++.++ +. .++.|.+||..+.+
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 555 5555544 6899999999999999998755554 99999999887 43 25789999999987
Q ss_pred ccccCC--C------CceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 184 SVFPSR--E------GTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 184 ~~~~~~--~------~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.+-... . +.....+.+.+++..++++.. ++.|.++|+.+++.+.++... + . ...+..+ ..+++.+.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~ 197 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCR 197 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECC
Confidence 533221 1 123345778888888887764 689999999999999888632 2 1 1223223 56778888
Q ss_pred CCeEEEEeCCC-CceeEEEecCC---CCCeE-EEEEe-cCCCEEEEEeCCCeEEEEeCCCCc--eeeeee----------
Q 014104 253 LGSIAISGLSS-DQRVATLRSTD---CTGIK-TLCYN-PCSRLVFAGTTAGYASCWDLRTMK--SLWETR---------- 314 (430)
Q Consensus 253 dg~i~vwd~~~-~~~~~~~~~~~---~~~v~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------- 314 (430)
||.+.+.++.+ ++......... ..++. ...|. ++|++++ .+.+|.|++.|+.+.. .+..+.
T Consensus 198 DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 198 DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 99999999986 55533221101 11221 24564 6776555 5568999999997653 333222
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
...+....++ ++++++.++.... .+.|.+.|+.+++.++++....
T Consensus 277 ~~p~g~q~~a-~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------------------------ 331 (386)
T 3sjl_D 277 WRPGGWQQVA-YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------------------------ 331 (386)
T ss_dssp EEECSSSCEE-EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------------------------
T ss_pred ccCCCcceee-ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------------------------
Confidence 0112333465 7899998877642 2579999999999999987632
Q ss_pred CcccccCCCCCCCCeeEEEE--cCe-EEEE-eeCCCeEEEEEecCCCc
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMK-KVVT-THNSKYIRLWKFNYSDK 428 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~-~l~t-~~~Dg~v~vw~~~~~~~ 428 (430)
.+..+++ |++ +|++ ...++.|.++|..+++.
T Consensus 332 -------------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 332 -------------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp -------------EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred -------------CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 3455666 554 4544 55689999999988764
No 196
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.57 E-value=1.9e-12 Score=127.67 Aligned_cols=273 Identities=13% Similarity=0.070 Sum_probs=177.5
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCcee----------EEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS----------LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..++.++.++.++.|..+|..+|+.+..+....... .......+..++ ++.++.+..+|.++++.++..
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 357788888889999999999999998887542210 011112344454 788999999999999876443
Q ss_pred CCC------ceeeeeEEEEcCCceEEEe------cCCeEEEEECCCCeeeEEeecCC-----------------------
Q 014104 189 REG------TFMKGLCMRYFDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHC----------------------- 233 (430)
Q Consensus 189 ~~~------~~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~----------------------- 233 (430)
... ......... .+..+++++ .+|.|..||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 221 011101111 234455554 37899999999999987775210
Q ss_pred --------CCeEEEEecCC-CEEEEEeCCCe-------------------EEEEeCCCCceeEEEecC-CC-------CC
Q 014104 234 --------APVTSLSLSED-QLIISGSSLGS-------------------IAISGLSSDQRVATLRST-DC-------TG 277 (430)
Q Consensus 234 --------~~i~~~~~~~~-~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~~-~~-------~~ 277 (430)
.....+++++. +.++.++.++. |..+|..+|+.+..+... +. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01124677764 78888887764 999999999999888742 11 12
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeeeecCC-Cc----------------------------------
Q 014104 278 IKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWETRISP-NV---------------------------------- 319 (430)
Q Consensus 278 v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------------------------------- 319 (430)
+.......+|+ .++.++.+|.++++|.++|+.+....... ..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22223334665 78899999999999999999874332110 00
Q ss_pred ----eEEEEEeeCCCCeEEEEcCC---------------------------------------------CeEEEEEcCCC
Q 014104 320 ----VYSLQHLQNDTSTLVVGGID---------------------------------------------GVLRVLDQNTG 350 (430)
Q Consensus 320 ----v~~l~~~s~~~~~l~s~~~d---------------------------------------------g~i~vwd~~~~ 350 (430)
-..++ ++|+..++++...+ |.|+.||+.+|
T Consensus 387 Gg~~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 387 GAHDWQPMS-YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp CSSCSSCCE-EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cccCCCcce-ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 01245 88888878776432 55666777666
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.+.++..+... .--.+...+.+++.|+.||.|+.||.++|+.+
T Consensus 466 ~~~W~~~~~~~~-----------------------------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 466 QAAWEVPYVTIF-----------------------------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEESSSC-----------------------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEeEccCCCCc-----------------------------------cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 666655442210 00133446778899999999999999999865
No 197
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=4.8e-12 Score=111.40 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=133.6
Q ss_pred cccceeEEEe-c-CCeEEEEeC--CCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 111 HSVGVDQCRM-K-RGLILTGVG--DKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 111 h~~~v~~~~~-~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
|...+..+++ + ++.++.+.. ++.|.+|| .+++.+..+... ..+..++++++++.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l------------------- 134 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRI------------------- 134 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCE-------------------
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCE-------------------
Confidence 4456788888 3 455544443 78999999 556766666432 23445666666553
Q ss_pred cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
+++...++.|.+||. .++.+..+. .+...+..++++++ +++++.+.++.|.+||.
T Consensus 135 ---------------------~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 192 (286)
T 1q7f_A 135 ---------------------IVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY 192 (286)
T ss_dssp ---------------------EEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred ---------------------EEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC
Confidence 333344566677764 344444443 34456889999976 56666667899999997
Q ss_pred CCCceeEEEecC-CCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCC--CceEEEEEeeCCCCeEEEEc
Q 014104 262 SSDQRVATLRST-DCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISP--NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 262 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~~~l~s~~ 337 (430)
+++.+..+... +...+..++++|+|+++++...++ .|.+||.. ++.+..+..+. ..+.+++ ++|+|+++++ +
T Consensus 193 -~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~-~~~~g~l~vs-~ 268 (286)
T 1q7f_A 193 -EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVA-LMDDGSVVLA-S 268 (286)
T ss_dssp -TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEE-EETTTEEEEE-E
T ss_pred -CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEE-ECCCCcEEEE-C
Confidence 46666666531 225789999999999888887775 99999954 66676666554 3467888 9999987777 5
Q ss_pred CCCeEEEEEcCCC
Q 014104 338 IDGVLRVLDQNTG 350 (430)
Q Consensus 338 ~dg~i~vwd~~~~ 350 (430)
.++.|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 7999999998654
No 198
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=2.4e-11 Score=109.46 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=156.2
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeC-----Ce
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIG-----TR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-----~~ 173 (430)
......+.++...+.+++| +++ +++++..++.|.+||..+++...... ....+..++++++++.+++... +.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 3456677788888899999 556 56677888999999999887665442 3456777999999988776544 48
Q ss_pred EEEEEcCCCccc--cc-CCCCceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC
Q 014104 174 ICIWRRNGLRSV--FP-SREGTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244 (430)
Q Consensus 174 i~vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~ 244 (430)
|.+||.+++... .. .........+.+.+.+..+++... .+.|..+|..+++... +..+...+..++++|+
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTD 192 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTT
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCC
Confidence 999999887643 11 111222223344444433444332 3567777776555433 3233446789999976
Q ss_pred -CEE-EEEeCCCeEEEEeCCC-CceeEEE-----ec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 245 -QLI-ISGSSLGSIAISGLSS-DQRVATL-----RS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 245 -~~l-~~~~~dg~i~vwd~~~-~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+.+ ++.+.++.|.+||+.+ +..+..+ .. .....+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 544 4555678999999864 3332211 11 01136788999999998888777889999998 4666666654
Q ss_pred CCC------ceEEEEEeeCCCCeEEEEcCCC
Q 014104 316 SPN------VVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 316 ~~~------~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+.. .+.+++ |+|+++.|+.++.++
T Consensus 272 ~~~~~g~~~~~~~~~-~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQ-FIPGTNQLIICSNDI 301 (333)
T ss_dssp TTGGGTCSCBCCEEE-ECTTSCEEEEEEECG
T ss_pred CCCccccccCcceEE-ECCCCCEEEEEeCcc
Confidence 432 688888 889987776666554
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=8.4e-12 Score=111.35 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=156.2
Q ss_pred EeccccceeEEEe-cCC-eEEE-------EeCCCeEEEEecCCCeeEEeee-----cCCceeEEEEecC-CCEEEEEeCC
Q 014104 108 WKAHSVGVDQCRM-KRG-LILT-------GVGDKVMRLWSLEGYKCVEEYS-----LPNAASLVDFDFD-ESKIVGLIGT 172 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s-------~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~~~ 172 (430)
+.+.-....+++| +++ ++++ +..++.|.+||..+++...... ....+..++++++ ++.+++...+
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 4444556678888 456 5555 4778999999988877543222 1245667888998 6666677667
Q ss_pred eEEEEEcCCCccc-c-cC-CCC---ceeeeeEEEEcCCceEEEecC---------------CeEEEEECCCCeeeEEeec
Q 014104 173 RICIWRRNGLRSV-F-PS-REG---TFMKGLCMRYFDPEAVVGCED---------------GTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~-~~-~~~---~~~~~~~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~ 231 (430)
.|.+||.+ ++.. + .. ... .....+.+.+.+...++...+ +.|..+|.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 89999998 5432 2 11 111 112233333334334444443 578888875 5543332 2
Q ss_pred CCCCeEEEEec----CCC-EEE-EEeCCCeEEEEeCC-CCce-----eEEEecCCC-CCeEEEEEecCCCEEEEEeCCCe
Q 014104 232 HCAPVTSLSLS----EDQ-LII-SGSSLGSIAISGLS-SDQR-----VATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 232 ~~~~i~~~~~~----~~~-~l~-~~~~dg~i~vwd~~-~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
+......++++ ++. .++ +...++.|.+||.. +++. ...+.. +. ..+..++++++|+++++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCE
Confidence 34456888998 873 444 44567899999986 4442 222222 22 56889999999998888778889
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCC
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~ 349 (430)
|.+||..+++.+..+..+...+.+++ ++|+++.| ++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~-~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLH-FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEE-ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEE-ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987877777776667889998 89999955 5555678999999864
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=7.8e-12 Score=112.68 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=169.5
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecCC--------ceeEEEEecCC
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLPN--------AASLVDFDFDE 163 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (430)
.+.++..-..+ . +++ +++ +++.++ .++.|.+||..+++.+.++..+. ....+.++|||
T Consensus 71 v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 71 VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 34444433344 3 777 566 565554 36789999999999999887542 45569999999
Q ss_pred CEEE-EEe--CCeEEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCC-CeeeEEeecC----CC
Q 014104 164 SKIV-GLI--GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYS-RKCSQIIRMH----CA 234 (430)
Q Consensus 164 ~~l~-~~~--~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~----~~ 234 (430)
++++ +.. ++.|.++|+.+.+.+-....... ..+.+.+ ..+++.+.||.+.+.++.+ ++.......+ ..
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 9988 443 68999999999885433322211 1222333 3477889999999999976 5543322111 12
Q ss_pred CeE-EEEec-CCCEEEEEeCCCeEEEEeCCCCc--eeEEEe---------cCCCCCeEEEEEecCCCEEEEEeC------
Q 014104 235 PVT-SLSLS-EDQLIISGSSLGSIAISGLSSDQ--RVATLR---------STDCTGIKTLCYNPCSRLVFAGTT------ 295 (430)
Q Consensus 235 ~i~-~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~------ 295 (430)
++. ...|. ++..++..+.+|.|.+.|+.++. .+..+. +-.......++++|+++.++....
T Consensus 226 ~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred cccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 221 23554 45545456678999999997654 333332 001224445788999998887643
Q ss_pred ----CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEE-cCCCeEEEEEcCCCceEEEEEecc
Q 014104 296 ----AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVG-GIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 296 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
...|.++|+.+++.+.++... ..+.+++ +++|++ +|++. ..++.|.++|..+++.++++....
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~la-vs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN-VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEE-ECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECC-CCcceEE-ECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 257999999999999888754 4678998 999997 66664 568999999999999999997643
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=6.6e-11 Score=107.90 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=164.1
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecCCC
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDES 164 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 164 (430)
+.++..-..+ .+++ +++ +++.+. .++.|.+||..+.+.+.++... .....+.++|||+
T Consensus 60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 4444433333 6777 566 666664 3678999999999888887653 2344689999999
Q ss_pred EEE-EEe--CCeEEEEEcCCCccccc-CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee-----cCCC
Q 014104 165 KIV-GLI--GTRICIWRRNGLRSVFP-SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-----MHCA 234 (430)
Q Consensus 165 ~l~-~~~--~~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~ 234 (430)
+|+ +.. ++.|.++| ++++.+.. ...... ..+.+.++. +++.+.||.+.++|. +++.+.... ....
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence 998 443 47899999 88875433 322221 233444444 677788999999999 887663322 1112
Q ss_pred Ce-EEEEecC-CCEEEEEeCCCeEEEEeCCCCc--eeEEEecC---------CCCCeEEEEEecCCCEEEEEeC------
Q 014104 235 PV-TSLSLSE-DQLIISGSSLGSIAISGLSSDQ--RVATLRST---------DCTGIKTLCYNPCSRLVFAGTT------ 295 (430)
Q Consensus 235 ~i-~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~------ 295 (430)
++ ....+.+ +..++..+..+.+.+.|+.++. .+..+... .......+.++|+++.++++..
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 21 2233443 2333333467899999987553 22332210 1123445789999998887653
Q ss_pred ----CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 296 ----AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 296 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
.+.|.++|+.+++.+.++... ....+++ ++|||+ .++++. .++.|.++|+.+++.+.++
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~-~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLG-HDVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECC-CCcCeEE-ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999998888643 4578898 999999 788877 5899999999999999884
No 202
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=137.57 Aligned_cols=255 Identities=15% Similarity=0.088 Sum_probs=142.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEE
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 199 (430)
..++.+++++.||.|..||..+|+.+..+.. ..+.... +
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p----------------------------------------~ 45 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP----------------------------------------T 45 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----------------------------------------
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecc----------------------------------------e
Confidence 3566899999999999999999998877664 2211111 1
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVT-SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
...+..+++++.||.|+.||..+|+.+..+..+.. .+. +..+..+..+++++.++.++.||..+|+.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~-- 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF-- 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC--
Confidence 11222356667889999999888887666543311 010 01111345678888899999999999999888764 22
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCCCceEE
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
...++|++..+++++.|+.|+.||.++++.+..+..+. ..... +.++. ..+++++.||.|+.||..+|+.+.
T Consensus 123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~-~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 123 --ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASL-PEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBC-CCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred --cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcc-ccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 23456788899999999999999999999887765332 22232 33332 567788899999999999999988
Q ss_pred EEEeccCcceeeeccCCceEEEee-------cccc--cCCc----ccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEE
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNE-------GRRL--SAGC----CIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLW 421 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~-------~~~~--~~~~----~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw 421 (430)
+.........+...+.||.+.+.. ...+ .++. .......+ ..+.+....+..|+.++.||.|...
T Consensus 198 ~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~--~~~~sp~~~~g~lyv~~~~G~l~al 275 (369)
T 2hz6_A 198 IQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFP--KETEAKSKLTPTLYVGKYSTSLYAS 275 (369)
T ss_dssp EEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCC--CHHHHHHHSEEEECBEECSSCEECC
T ss_pred EecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccC--ccccccccccceEEEecccCCEEec
Confidence 887554444556677788654211 1111 1122 22222221 1122222246678888899999888
Q ss_pred EecC
Q 014104 422 KFNY 425 (430)
Q Consensus 422 ~~~~ 425 (430)
+...
T Consensus 276 ~~~~ 279 (369)
T 2hz6_A 276 PSMV 279 (369)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8763
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=2.7e-10 Score=100.64 Aligned_cols=248 Identities=7% Similarity=-0.060 Sum_probs=158.8
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEEEEe-C
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIVGLI-G 171 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-~ 171 (430)
|..+......+......+.++++ +++ ..++...++.|.+||.. ++... +..+ ..+..+++++++..+++.. +
T Consensus 5 w~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 5 WMNFYLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA 82 (300)
T ss_dssp GGSEEEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred ceeeeEEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC
Confidence 34433333344455667889988 456 44444467999999988 55443 3222 4566688888888777554 6
Q ss_pred CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 248 (430)
+.|..+|.+.....+... .......+.+...+...++...++.|..+|.. ++.... +......+..+++.++ ++.+
T Consensus 83 ~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 83 NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp TEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred CeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 889999988332222221 12222223333333334444457899999987 654422 2323457889999875 6555
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQ 327 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s 327 (430)
+...++.|..+|. +++............+..++++++|++.++....+.|.+||. +++.... +..+...+.+++ ++
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~d 238 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAIT-AG 238 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-EC
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEE-EC
Confidence 5555789999998 565543221113457899999999987777666778999998 4443322 233446678888 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
++|...++...++.|..||. +++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp STTCEEEEETTTTEEEEECT-TSCE
T ss_pred CCCCEEEeccCCCeEEEECC-CCcE
Confidence 99987777767789999998 4543
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=2.1e-11 Score=117.00 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=168.0
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecCCceeEEEEe----cCCCEEE--EEeCCeEEEEEcCCCc
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASLVDFD----FDESKIV--GLIGTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~----~~~~~l~--~~~~~~i~vwd~~~~~ 183 (430)
.+..+.+ +++ ++++++.|+.|.+||+. +++.+.++........++|+ |||++++ ...++.+.++|..+.+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 3456777 566 88889999999999995 88888888876677789999 6999888 4457999999987765
Q ss_pred ccccCCC------------C------------c--------------------------------eeeeeEEEEcCCceE
Q 014104 184 SVFPSRE------------G------------T--------------------------------FMKGLCMRYFDPEAV 207 (430)
Q Consensus 184 ~~~~~~~------------~------------~--------------------------------~~~~~~~~~~~~~l~ 207 (430)
.+..... . . ......+.+++.+++
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 3211000 0 0 000123444455554
Q ss_pred E-EecCCeEEEEECCCCeeeEEeec-----CCCCeEEEEecCC-C-EEEEEe-CCCeEEEEeCCC-------CceeEEEe
Q 014104 208 V-GCEDGTARVFDMYSRKCSQIIRM-----HCAPVTSLSLSED-Q-LIISGS-SLGSIAISGLSS-------DQRVATLR 271 (430)
Q Consensus 208 ~-~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~~~~-~-~l~~~~-~dg~i~vwd~~~-------~~~~~~~~ 271 (430)
+ ...++.|.++|+.+++.+..+.. |.+.-..+ ++|+ . ..+++. .++.|.++|..+ .+.++++.
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence 4 44678999999999988776653 33222222 4564 4 444443 468999999987 56788887
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeC-------CCeEEEEeCCCC-----cee-eeee--------cCCCceEEEEEeeCCC
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGTT-------AGYASCWDLRTM-----KSL-WETR--------ISPNVVYSLQHLQNDT 330 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~-----~~~-~~~~--------~~~~~v~~l~~~s~~~ 330 (430)
. ....-..+..+|+++++.+... .++|.++|+.+. ... ..+. .....+..+. |+|+|
T Consensus 437 ~-~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G 514 (567)
T 1qks_A 437 A-LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE-FNKDG 514 (567)
T ss_dssp C-SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE-ECTTS
T ss_pred c-CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee-ECCCC
Confidence 5 3334455789999999998763 358999999876 211 2221 1235688888 99999
Q ss_pred CeEEEEc-----CCCeEEEEEcCCCceEEEEEe
Q 014104 331 STLVVGG-----IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 331 ~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+++..+. .++.|.|+|..+++.+.++..
T Consensus 515 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 515 TEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9887663 379999999999999888864
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.52 E-value=8.5e-12 Score=114.52 Aligned_cols=256 Identities=10% Similarity=0.013 Sum_probs=175.9
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccCCC--------Cc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GT 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~~~--------~~ 192 (430)
+.|.+.|..+++.+.++...... .+.++||++.++ +. .++.|.++|..+.+.+-.... +.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 69999999999999999876555 899999999888 43 367899999998875422211 12
Q ss_pred eeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE-
Q 014104 193 FMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVAT- 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~- 269 (430)
....+.+.+++..++++.. ++.|.+.|+.+++.+..+.... ...+.-.....+++.+.||.+.+.+..+++....
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 2345778888888888764 5899999999999988886422 1111111235667778899999889866665532
Q ss_pred ---EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeec----------CCCceEEEEEeeCCCCeEE
Q 014104 270 ---LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRI----------SPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 270 ---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~v~~l~~~s~~~~~l~ 334 (430)
+..........+.+.+++..++.....+.|.+.|....... ..+.. .......++ ++|+++.++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va-~s~dg~rly 334 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA-YHRQSDRIY 334 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE-EEGGGTEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE-EcCCCCEEE
Confidence 11101111123567899888877778899999998754321 11110 011122356 889988777
Q ss_pred EEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 335 VGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 335 s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
+... ++.|.+.|+.+.+.+.++.... ...+++|
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-------------------------------------~P~gia~ 377 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-------------------------------------EIDSINV 377 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-------------------------------------EECEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCC-------------------------------------CcCeEEE
Confidence 6642 4589999999999999987532 2345555
Q ss_pred --cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 405 --GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 405 --~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
|++ +++++. .++.|.|+|..+++.
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 566 677776 689999999988764
No 206
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=4.8e-12 Score=114.72 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=144.4
Q ss_pred cceeEEEe-cCC-eEEEEeCC---C--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC-------------
Q 014104 113 VGVDQCRM-KRG-LILTGVGD---K--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG------------- 171 (430)
Q Consensus 113 ~~v~~~~~-~~~-~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------------- 171 (430)
..+..+.| |+| +|+.++.+ + .|.+||+.+++.......+. +..+.|+||++.|+ ++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 45677788 566 77776653 3 47888988888776665555 77799999999988 4432
Q ss_pred --------------CeEEEEEcCCCcc-c-ccCCCCceeeeeEEEEcCCceEEEecC---------CeEEEEECCCCeee
Q 014104 172 --------------TRICIWRRNGLRS-V-FPSREGTFMKGLCMRYFDPEAVVGCED---------GTARVFDMYSRKCS 226 (430)
Q Consensus 172 --------------~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~ 226 (430)
..|.+||+.+++. . +.. . ......+++++ .++++..+ ..|.++| +++..
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~ 211 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE 211 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE
Confidence 5689999988764 2 222 2 33445667666 55556543 2455555 55543
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEE-EEEecCCCEEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKT-LCYNPCSRLVFAGTTA 296 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d 296 (430)
.+..+ ..+..+ +|+ +.++.++.+ ..|.+|| +++.. .+...+...+.. +.|+ ++ ++++++.+
T Consensus 212 -~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 212 -KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp -EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred -EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 34334 555555 655 666666543 4788888 55543 343335667886 8999 88 88899999
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE-EEEEcCCCc
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL-RVLDQNTGE 351 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i-~vwd~~~~~ 351 (430)
+.+++| +.+++. ..+..+...|.++. ++| ..+++++.++.. .+|.+. ++
T Consensus 283 ~~~~l~-~~~g~~-~~~~~~~~~v~~~~-~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 283 GSVNLY-IWDGEI-KPIAKGRHWIMGFD-VDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp TEEEEE-EESSSE-EEEECSSSEEEEEE-ESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CcEEEE-EcCCce-EEEecCCCeEEeee-eeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 999999 876654 34444577889998 888 677777766654 777766 54
No 207
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=5.9e-12 Score=113.26 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=138.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR- 230 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 230 (430)
..+..++++++|+.+++...+. .|...+........ ... ..+ ..++.|.+||..+++.+..+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~--~~~~~~~~~~~~~~-~~~--------~~~-----~~~~~i~~~d~~~g~~~~~~~~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDH--VWDGNSFDSKFVYQ-QRG--------LGP-----IEEDTILVIDPNNAEILQSSGK 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTC--CCCTTSBCTTSCBS-CGG--------GCS-----CCSCCEEEECTTTCCEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCC--eEEeeccCcceeec-ccc--------ccc-----ccCCcEEEEECCCCeEEeccCC
Confidence 4577789999988877777763 23332221110000 000 000 146789999998888876654
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEec--------CCCCCeEEEEEec-CCCEEEEEe-CCCe
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRS--------TDCTGIKTLCYNP-CSRLVFAGT-TAGY 298 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~--------~~~~~v~~~~~~~-~~~~l~~~~-~dg~ 298 (430)
++......++++++ +++++...++.|++||..... .+..+.. .+...+..++++| +++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 34457889999975 777777888999999976432 4555531 1334789999999 788888876 6899
Q ss_pred EEEEeCCCCceeeeeecC----------CCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCCCceEEEEEec--cCccee
Q 014104 299 ASCWDLRTMKSLWETRIS----------PNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNTGEVLSRCVMD--IGSASS 365 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~----------~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~ 365 (430)
|++|| .+++.+..+... .....+++ ++|+ +.++++...++.|++||..+|+.+..+... ......
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 99999 557776665422 23478898 9998 777788888999999999989998888543 223344
Q ss_pred eeccCCceEE
Q 014104 366 SSNKVSGVIE 375 (430)
Q Consensus 366 ~~~s~d~~v~ 375 (430)
+++++ +.+.
T Consensus 246 ~~~~p-g~~~ 254 (329)
T 3fvz_A 246 ISYIP-GFLF 254 (329)
T ss_dssp EEEET-TEEE
T ss_pred eeecC-CEEE
Confidence 44455 4443
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.49 E-value=9.6e-11 Score=115.37 Aligned_cols=242 Identities=15% Similarity=0.130 Sum_probs=166.2
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-C-----ceeEEEEecCCCEEEEEe------CCeEEEEEcCCCccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-N-----AASLVDFDFDESKIVGLI------GTRICIWRRNGLRSV 185 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~ 185 (430)
+.+.++.++.++.|+.|..+|..+|+.+..+... . .....-...++..++++. ++.|..+|.++++.+
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 3445678999999999999999999999888764 2 111111112444444443 689999999998865
Q ss_pred ccCCCCce---------------------------------eeeeEEEEcCCceEEEecCC-------------------
Q 014104 186 FPSREGTF---------------------------------MKGLCMRYFDPEAVVGCEDG------------------- 213 (430)
Q Consensus 186 ~~~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~dg------------------- 213 (430)
+....... .....+.+....++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 43221100 01223344455577776654
Q ss_pred eEEEEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC----
Q 014104 214 TARVFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT---- 276 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---- 276 (430)
.|..+|..+|+.+..++. |. .....+... .+ ..++.++.+|.+.++|..+|+.+..+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999999887763 21 111222222 33 57889999999999999999998777531110
Q ss_pred ------Ce------------------------EEEEEecCCCEEEEEeC-------------------------------
Q 014104 277 ------GI------------------------KTLCYNPCSRLVFAGTT------------------------------- 295 (430)
Q Consensus 277 ------~v------------------------~~~~~~~~~~~l~~~~~------------------------------- 295 (430)
++ ..++|+|++.++++...
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 01 15688999888887543
Q ss_pred ------------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 ------------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 ------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|.|..||+.+++.+.++... ..+.+.. +...+..++.++.||.+++||..+|+.+.++.....
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~-~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGT-LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcc-eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 278999999999999887643 3344444 556788889999999999999999999999986543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.3e-10 Score=107.43 Aligned_cols=241 Identities=7% Similarity=-0.022 Sum_probs=160.7
Q ss_pred CEeEEEEecc---------------ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCC
Q 014104 102 RIDIDQWKAH---------------SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES 164 (430)
Q Consensus 102 ~~~~~~l~~h---------------~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
...+.++.|+ -.....+++ +++ ++++...++.|++||..+++............ ++++++++
T Consensus 105 ~~~v~tv~G~~~~~~~~dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~ 183 (409)
T 3hrp_A 105 AQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQ 183 (409)
T ss_dssp CEEEEEEEECTTCCSCCCBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSS
T ss_pred ccEEEEeecccCCCccCCCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCC
Confidence 3456777776 234667788 456 55555567899999999887766555544444 99999999
Q ss_pred EEE-EEeCC--eEEEEEcCCCcc--cc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE----eecC
Q 014104 165 KIV-GLIGT--RICIWRRNGLRS--VF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI----IRMH 232 (430)
Q Consensus 165 ~l~-~~~~~--~i~vwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~ 232 (430)
.|+ +..++ .|.+++..++.. .. ..........+++.+.+..|+++..++.|+.||..++..... ..++
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 887 44444 788888876543 11 011222233455555455577777789999999987753322 2222
Q ss_pred CCCe--EEEEecC-CC-EEEEEeCCCeEEEEeCCCCceeEEEecCC--------------CCCeEEEEEecCCCEEEEEe
Q 014104 233 CAPV--TSLSLSE-DQ-LIISGSSLGSIAISGLSSDQRVATLRSTD--------------CTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 233 ~~~i--~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~ 294 (430)
...- ..++++| +. ++++-..++.|+.||.... +..+.+.. -.....++++|+|+++++-.
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 2222 3899998 44 5555567889999997643 33333311 13588999999999777777
Q ss_pred -CCCeEEEEeCCCCceeeeeecC---------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 295 -TAGYASCWDLRTMKSLWETRIS---------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 295 -~dg~i~i~d~~~~~~~~~~~~~---------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.++.|+.||+.+++. ..+.++ -.....++ ++++|.++++-..++.|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEe
Confidence 789999999877754 334333 24577888 9999888888888888888765
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=1.1e-11 Score=124.27 Aligned_cols=238 Identities=13% Similarity=0.054 Sum_probs=153.5
Q ss_pred cccceeEEEe-cCC-eEEEEeCC-----CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCC----------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT---------- 172 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~---------- 172 (430)
|...+..+.| ||| +|+.++.+ .+|++||+.+++.+...........++|+|| +.|+ ++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 3345677788 566 66665543 3699999999987654221111246889999 8888 55544
Q ss_pred ----eEEEEEcCCCcc----cccCCCC-ceeeeeEEEEcCCceEEEecC-----CeEEEEECCCC--eeeEEeecCCCCe
Q 014104 173 ----RICIWRRNGLRS----VFPSREG-TFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSR--KCSQIIRMHCAPV 236 (430)
Q Consensus 173 ----~i~vwd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~i 236 (430)
.|.+|++.++.. ++..... .......+++++..|+..+.+ ..|.+||+.++ ++...+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 388999987652 2222221 123455667777777766654 38999999877 3145555555555
Q ss_pred EEEEecCCCEEEEEeC----CCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCcee
Q 014104 237 TSLSLSEDQLIISGSS----LGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSL 310 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 310 (430)
....+..++.|+..+. ++.|.+||+.++ .....+..++...+..+.++ ++.++++...|+..++|.+. +++..
T Consensus 320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 5554434566666654 346999999875 23334433344556677887 56677888889887777554 35555
Q ss_pred eeeecC-CCceEEEEEeeCCCCeEEEE----cCCCeEEEEEcCCCc
Q 014104 311 WETRIS-PNVVYSLQHLQNDTSTLVVG----GIDGVLRVLDQNTGE 351 (430)
Q Consensus 311 ~~~~~~-~~~v~~l~~~s~~~~~l~s~----~~dg~i~vwd~~~~~ 351 (430)
..+..+ .+.+..+. ++|+++.|+.. ...++|++||+.+++
T Consensus 399 ~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 399 GAVSLPGIGSASGLS-GRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EECBCSSSCEEEEEE-CCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeccCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 566543 56788887 88998866522 245889999998876
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=8e-12 Score=125.14 Aligned_cols=201 Identities=10% Similarity=0.001 Sum_probs=129.2
Q ss_pred ceeEEEEecCCCEEE-EEe-C----CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe------------
Q 014104 153 AASLVDFDFDESKIV-GLI-G----TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT------------ 214 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~-~----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------ 214 (430)
.....+|+|||+.|+ +.. + ..|++||+++++.+............+|+++ ..|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 345689999999998 433 2 3599999999875432111111134667777 67777776543
Q ss_pred --EEEEECCCCee--eEEee--cCCCCeEEEEecCC-CEEEEEeCC-----CeEEEEeCCCC--ceeEEEecCCCCCeEE
Q 014104 215 --ARVFDMYSRKC--SQIIR--MHCAPVTSLSLSED-QLIISGSSL-----GSIAISGLSSD--QRVATLRSTDCTGIKT 280 (430)
Q Consensus 215 --i~vwd~~~~~~--~~~~~--~~~~~i~~~~~~~~-~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~~v~~ 280 (430)
|++|++.+++. ...+. .+...+..+.|+|+ ++++..+.+ ..|.+||+.++ +....+.. +...+..
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~ 321 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQWD 321 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSCEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCceEE
Confidence 89999987752 22333 23335889999986 667766644 38999999877 31455554 3334444
Q ss_pred EEEecCCCEEEEEeC----CCeEEEEeCCCC--ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC-CCceE
Q 014104 281 LCYNPCSRLVFAGTT----AGYASCWDLRTM--KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN-TGEVL 353 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~ 353 (430)
. ++|+|+.|+..+. ++.|.+||+.++ +....+..+...+..+. ++ ++.++++...|+..+||.+. ++...
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~-~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG-IA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE-EE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE-EE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 4 3588998887765 345999999874 23333344445566666 55 56778888889887777554 45555
Q ss_pred EEEEe
Q 014104 354 SRCVM 358 (430)
Q Consensus 354 ~~~~~ 358 (430)
+.+..
T Consensus 399 ~~l~~ 403 (741)
T 1yr2_A 399 GAVSL 403 (741)
T ss_dssp EECBC
T ss_pred eeccC
Confidence 55543
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=5.8e-11 Score=105.87 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=153.2
Q ss_pred CceeEEEEecCCCEEEE--------EeCCeEEEEEcCCCcccccCC---CCceeeeeEEEEcC--CceEEEecCCeEEEE
Q 014104 152 NAASLVDFDFDESKIVG--------LIGTRICIWRRNGLRSVFPSR---EGTFMKGLCMRYFD--PEAVVGCEDGTARVF 218 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~--------~~~~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~--~~l~~~~~dg~i~vw 218 (430)
.....++|++++..+++ ..++.|.+||..+++...... .+.......+.... ..+++++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 44567888888887777 678899999987766322111 01112234444443 346666666689999
Q ss_pred ECCCCeeeEE-eec----CCCCeEEEEecCC-CEEEEEeCC---------------CeEEEEeCCCCceeEEEecCCCCC
Q 014104 219 DMYSRKCSQI-IRM----HCAPVTSLSLSED-QLIISGSSL---------------GSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 219 d~~~~~~~~~-~~~----~~~~i~~~~~~~~-~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|.. ++.... ... ....+.+++++++ .+.++...+ +.|..+|.. ++...... ....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~ 173 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF 173 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCC
Confidence 987 665433 221 1235789999876 555555444 578888876 55443333 2335
Q ss_pred eEEEEEe----cCCCEEEEE-eCCCeEEEEeCC-CCc-----eeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 278 IKTLCYN----PCSRLVFAG-TTAGYASCWDLR-TMK-----SLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 278 v~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...++++ |+++.++.+ ..++.|.+||.. +++ ....+..+. ..+..++ ++++|.++++...++.|.+|
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~-~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD-FDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE-EBTTCCEEEEEETTTEEEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE-ECCCCCEEEEEcCCCEEEEE
Confidence 7889999 999766554 567899999986 343 223333343 5677888 99999988887788999999
Q ss_pred EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe-EEEEeeCCCeEEEEE
Q 014104 346 DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK-KVVTTHNSKYIRLWK 422 (430)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~-~l~t~~~Dg~v~vw~ 422 (430)
|..+++.+..+..+. ..+.++++ +++ .+++...++.|..|+
T Consensus 253 d~~~g~~~~~~~~~~------------------------------------~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPF------------------------------------EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CTTCBSCSEEEECSS------------------------------------SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCCcEeEEEeCCC------------------------------------CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 998777766654322 35777777 466 455666678999998
Q ss_pred ecC
Q 014104 423 FNY 425 (430)
Q Consensus 423 ~~~ 425 (430)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 864
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.48 E-value=3.8e-11 Score=118.46 Aligned_cols=255 Identities=12% Similarity=0.123 Sum_probs=169.9
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-C-----ceeEEEEecCCCEEEEE------eCCeEEEEEcCCCcccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-N-----AASLVDFDFDESKIVGL------IGTRICIWRRNGLRSVF 186 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~------~~~~i~vwd~~~~~~~~ 186 (430)
.+.++.++.++.|+.|..+|..+|+.+..+... + .....-.-.++..+++. .++.|..||.++++.++
T Consensus 118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 445678999999999999999999999877653 1 11111111255555543 26899999999988654
Q ss_pred cCCCC----c----------------------------eeeeeEEEEcCCceEEEecCCe-------------------E
Q 014104 187 PSREG----T----------------------------FMKGLCMRYFDPEAVVGCEDGT-------------------A 215 (430)
Q Consensus 187 ~~~~~----~----------------------------~~~~~~~~~~~~~l~~~~~dg~-------------------i 215 (430)
..... . .-...++.+....++.++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 32210 0 0012233334455788877764 9
Q ss_pred EEEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC------
Q 014104 216 RVFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT------ 276 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------ 276 (430)
..+|..+|+.+..++. |. .++...... .+ ..++.++.+|.++++|.++|+.+...+.....
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999999988764 21 122222221 23 37888999999999999999988554321100
Q ss_pred --------------------------------CeEEEEEecCCCEEEEEeC-----------------------------
Q 014104 277 --------------------------------GIKTLCYNPCSRLVFAGTT----------------------------- 295 (430)
Q Consensus 277 --------------------------------~v~~~~~~~~~~~l~~~~~----------------------------- 295 (430)
.-..++|+|+..++++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0112688998888876532
Q ss_pred ----------------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 296 ----------------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 296 ----------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+|.|+.||+.+++.+.++..+.. +..-. +...+.+++.++.||.|+.||.++|+.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~-~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGT-LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCcc-ceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988876643 23323 5567889999999999999999999999999875
Q ss_pred cCcc-eeeeccCCceEE
Q 014104 360 IGSA-SSSSNKVSGVIE 375 (430)
Q Consensus 360 ~~~~-~~~~~s~d~~v~ 375 (430)
.... .-++++.||..+
T Consensus 516 ~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SCCCSCCEEEEETTEEE
T ss_pred CCcccCceEEEECCEEE
Confidence 4432 233444555543
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.46 E-value=7.4e-12 Score=112.57 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=182.7
Q ss_pred eEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCC-Cc
Q 014104 116 DQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE-GT 192 (430)
Q Consensus 116 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~ 192 (430)
.+... .++.+..++.++.|..|| .+++....+..+... ..+....++..++++.+ +..+|. +++....... ..
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 34455 466888888899999999 888877665543322 33445555554444444 888886 4443332221 11
Q ss_pred eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
......+ .+..+.+++.++.+..+|.. ++.......+...+.++...++..++.++.++.+..+|.. ++....+..
T Consensus 99 ~~~~~~~--~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 99 IVSDFTI--FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp --CCEEE--ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cccCceE--ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec
Confidence 1112222 26668889999999999988 8777766655555666666656667788888999999998 887777764
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
....+.++.+.+++... .++ +.|..+| .+++.+.........+.++. ..++|. |..++.++.|..+|. +++.
T Consensus 175 -~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~-~~~~g~-l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 175 -NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA-ISEDGT-IYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp -SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCE-ECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred -CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceE-ECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence 34467777787787754 444 6799999 77877777666556677777 777765 555667788888884 5777
Q ss_pred EEEEEeccCcceeeeccCCceEEEeecc----ccc-CCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCC
Q 014104 353 LSRCVMDIGSASSSSNKVSGVIERNEGR----RLS-AGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 353 ~~~~~~~~~~~~~~~~s~d~~v~~~~~~----~~~-~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+..+..............++.+.+.+.. .+. .+....... .....+.++.. .+..|..|+.+|.+.+...+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~-~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFE-TGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEE-CSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEE-cCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 7666644332222222334444322111 111 111121111 12345666667 3556777899999998876543
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=1.1e-11 Score=112.17 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc------------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEEC
Q 014104 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRS------------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM 220 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 220 (430)
.+..+++++....++++....+.+|+++..+. ....... ...+++ ++..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 46779999999999977767888899764331 1111222 333444 66667777 8899999999
Q ss_pred CCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 221 YSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
.+.........|..++.++.+.+.+ +++++.||.+.+||+.+++... + ...|++++|+|+| ++.|..||+++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCc--eEEEEcCCcEE
Confidence 8776666677788889888887544 8888999999999999887653 2 2379999999999 67899999999
Q ss_pred EEeCCCCce--eeee------e---cCCCceEEEEEeeCCCCeEEEEc
Q 014104 301 CWDLRTMKS--LWET------R---ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 301 i~d~~~~~~--~~~~------~---~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+|+...++. ..++ . +|...|.++. |.+++.++++-+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~-wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT-ILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE-ESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEE-EecCCeEEEEEc
Confidence 999887664 4444 2 3678899999 888888887643
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=1.1e-09 Score=96.55 Aligned_cols=233 Identities=11% Similarity=-0.010 Sum_probs=147.6
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec---CCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCc
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIVGL-IGTRICIWRRNGLR 183 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~ 183 (430)
.+...+.++++ +++ .+++...++.|..||.. ++. ..+.. ...+..+++++++..+++. .++.|.+||.....
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE
Confidence 34567888888 566 45554557899999976 332 33332 2356668888988877754 47889999984332
Q ss_pred ccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 184 SVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
..+... .......+++...+...++...++.|..||. +++.... +......+..++++++ .+.++...++.|.+||
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 222211 1222223333333333444455789999998 6665432 2334456889999875 5555555678999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee--ecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET--RISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
. +++............+.+++++++|+++++...++.|..||.. ++. ..+ ..+...+.+++ + +++.+.++.+
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~-~-~~g~l~v~~~- 284 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII-EEYPIQIKSAEPHGIC-F-DGETIWFAME- 284 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE-EEEECSSSSCCEEEEE-E-CSSCEEEEET-
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce-EEEeCCCCCCccceEE-e-cCCCEEEEec-
Confidence 8 6664432121134578999999999977666577889999984 442 233 33446788998 7 8888766655
Q ss_pred CCeEEEEEcCCCc
Q 014104 339 DGVLRVLDQNTGE 351 (430)
Q Consensus 339 dg~i~vwd~~~~~ 351 (430)
.+.+..+|..+++
T Consensus 285 ~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 285 CDKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEEC---
T ss_pred CCcEEEEEcCccc
Confidence 5678778876543
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.3e-10 Score=106.68 Aligned_cols=235 Identities=11% Similarity=0.123 Sum_probs=161.3
Q ss_pred EEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecCCCEEE-EEe--CCe
Q 014104 117 QCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDESKIV-GLI--GTR 173 (430)
Q Consensus 117 ~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~-~~~--~~~ 173 (430)
.+.+ +++ +++.+. .++.|.++|..+++.+.++..+ .....+.++||+++++ +.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 5677 566 565554 4679999999999999888753 2345689999999998 443 578
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEE----eecCCCCe-EEEEecCC-CE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQI----IRMHCAPV-TSLSLSED-QL 246 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~i-~~~~~~~~-~~ 246 (430)
|.++|+.+.+.+.....+.. ..+.+.+ ..+++.+.||.+.+.+..+++.... +.....++ ..+.+.++ ..
T Consensus 202 VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 99999999875433222221 2233333 3367788899999999866665432 11111221 12345654 55
Q ss_pred EEEEeCCCeEEEEeCCCCcee--EEEecC---------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEeCC
Q 014104 247 IISGSSLGSIAISGLSSDQRV--ATLRST---------DCTGIKTLCYNPCSRLVFAGTT----------AGYASCWDLR 305 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~ 305 (430)
++..+..+.|.+.|...+... ..+... .......++++|+++.+++... ++.|.++|+.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 555567889999998754421 111100 0112234789999988777642 3579999999
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
+.+.+.++... ....++. ++|||+ ++++.. .++.|.++|+.+++.++++
T Consensus 359 T~kvv~~I~vg-~~P~gia-~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 359 TGERINKIELG-HEIDSIN-VSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCCEEEEEEEE-EEECEEE-ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEECC-CCcCeEE-EccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999988754 3578888 999999 888887 5899999999999999987
No 218
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.42 E-value=1e-10 Score=114.99 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=128.6
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce------------eEEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA------------SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
..++.++.++.++.|..+|..+|+.+..+...... ...++ .++..++++.++.+..+|.++++.++.
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 35778888888999999999999999888653221 11222 233344477899999999999986654
Q ss_pred CCCCc-----eeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCC----------------------
Q 014104 188 SREGT-----FMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCA---------------------- 234 (430)
Q Consensus 188 ~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~---------------------- 234 (430)
..... .... .....+..++++.. +|.|..+|..+|+.+..+.....
T Consensus 143 ~~~~~~~~~~~~~~-~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITG-APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecC-CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 32210 0000 01112444565543 58999999999999887753110
Q ss_pred ---------CeEEEEecCC-CEEEEEeCCC-------------------eEEEEeCCCCceeEEEecC-CC-------CC
Q 014104 235 ---------PVTSLSLSED-QLIISGSSLG-------------------SIAISGLSSDQRVATLRST-DC-------TG 277 (430)
Q Consensus 235 ---------~i~~~~~~~~-~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~-~~-------~~ 277 (430)
....+++++. +.++.++.++ .|..+|..+|+.+..+... |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 1123567654 7788887766 4999999999999888752 21 23
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeee
Q 014104 278 IKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 278 v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
+....+..+|+ .++.++.+|.++++|..+|+.+...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 33333444675 6889999999999999999988543
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=2.2e-10 Score=105.92 Aligned_cols=245 Identities=11% Similarity=-0.028 Sum_probs=158.9
Q ss_pred ceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC--eEEEEECCCCeeeEEe
Q 014104 153 AASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--TARVFDMYSRKCSQII 229 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~ 229 (430)
....++++++++.+++. .++.|++||.+++............. +++.+.+..++++..++ .|.+++..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 34568899998866644 45899999999876432222222223 66666677788887765 8999998765543333
Q ss_pred ----ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE----EecCCCCC-eE-EEEEecC-CCEEEEEeCCC
Q 014104 230 ----RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT----LRSTDCTG-IK-TLCYNPC-SRLVFAGTTAG 297 (430)
Q Consensus 230 ----~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~-v~-~~~~~~~-~~~l~~~~~dg 297 (430)
......+.+++++| +..|+.+..++.|..||..++..... ..+ .... .. .++|+|+ +.++++-..++
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 21445678899998 56677777789999999987764322 111 1111 23 9999995 55566666788
Q ss_pred eEEEEeCCCCceeeeeecCC---------------CceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 298 YASCWDLRTMKSLWETRISP---------------NVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~~~~---------------~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|+.|+.... +..+.++. .....++ ++|+|.++++-. .++.|+.||+.+++ +.++.++..
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~ 365 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVD 365 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTT
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCC
Confidence 9999997643 22332221 3477888 999999888887 88999999987776 445554322
Q ss_pred cceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 362 SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 362 ~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
. .+..||.. ....-.....++++ +.++++-..+++|+.++++
T Consensus 366 ~----~g~~~g~~-----------------~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 366 V----ASQIDGTP-----------------LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp C----BSCCCBST-----------------TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred C----CCcCCCCh-----------------hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 0 11111100 00111356778884 7778888888999988763
No 220
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.36 E-value=1.5e-09 Score=104.58 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=124.7
Q ss_pred ecCCeEEEEeC-CCeEEEEec-CCCeeEEeeecCCce------------eEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 120 MKRGLILTGVG-DKVMRLWSL-EGYKCVEEYSLPNAA------------SLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 120 ~~~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
..++.++.++. ++.|..+|. .+|+.+..+...... ...++ .+..++ ++.++.+..+|.++++.
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 35777777887 899999999 899999887654221 01222 344444 77899999999999887
Q ss_pred cccCCCCc-----eeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCC------------------
Q 014104 185 VFPSREGT-----FMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAP------------------ 235 (430)
Q Consensus 185 ~~~~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------ 235 (430)
++...... .....-. ..+..+++++. +|.|..+|..+|+.+..+......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~-v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPF-VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCE-EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEecCCCCCccceeccCCE-EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 65432211 1110111 12445666665 789999999999998877532110
Q ss_pred -------------------e-EEEEecCC-CEEEEEeCC----------------CeEEEEeCCCCceeEEEecCC-C--
Q 014104 236 -------------------V-TSLSLSED-QLIISGSSL----------------GSIAISGLSSDQRVATLRSTD-C-- 275 (430)
Q Consensus 236 -------------------i-~~~~~~~~-~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~-~-- 275 (430)
+ ..+++.+. ..++.++.+ +.|..+|..+|+.+..++..+ .
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0 12455543 566655532 369999999999998886421 1
Q ss_pred -----CCeEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 276 -----TGIKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 276 -----~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
....-+...++|+ .++.++.+|.++++|..+++.+....
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 1112223335774 57788999999999999999887654
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.4e-09 Score=96.22 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=145.5
Q ss_pred cccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-c
Q 014104 111 HSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-F 186 (430)
Q Consensus 111 h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~ 186 (430)
+..--.+..|. ++ ++++...++.|..||..+++. ..+..+..+..++++++++.+++. ++.|.+||.++++.. +
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence 33344566773 34 666667789999999988765 445556677889999999955554 788999999877532 1
Q ss_pred -cCCC---CceeeeeEEEEcCCceEEEec------------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-E
Q 014104 187 -PSRE---GTFMKGLCMRYFDPEAVVGCE------------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-I 248 (430)
Q Consensus 187 -~~~~---~~~~~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~ 248 (430)
.... ......+.+.+.+. +..++. .+.|..+|.. ++... +..+......++|+|+ +.+ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEE
Confidence 1111 11122233333444 444431 2345555542 33332 3333445688999976 544 5
Q ss_pred EEeCCCeEEEEeC--CCCcee--EEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 249 SGSSLGSIAISGL--SSDQRV--ATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 249 ~~~~dg~i~vwd~--~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+.+.++.|.+||+ .++... +.+.. .....+..++++++|++.++....+.|..||..+++.+..+..+...+++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 5667889999987 455432 12211 12346889999999998888777889999999999998888877778999
Q ss_pred EEEee-CCCCeEEEEcC
Q 014104 323 LQHLQ-NDTSTLVVGGI 338 (430)
Q Consensus 323 l~~~s-~~~~~l~s~~~ 338 (430)
++ |. |+++.|+.++.
T Consensus 246 ~~-f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 246 CC-FGGKNYSEMYVTCA 261 (297)
T ss_dssp EE-EESGGGCEEEEEEB
T ss_pred EE-EeCCCCCEEEEEcC
Confidence 98 87 88877655543
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=1.7e-13 Score=125.25 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=86.7
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE-
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK- 279 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~- 279 (430)
.+..+++++.||.|+.||..+|+.+..+.. +.+.+..+.. +..+++++.|+.|+.||..+|+.+..+.......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 455589999999999999999999988876 4444443433 457777889999999999999887766531111110
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+..+. .+..+++++.++.|+.||.++|+.+..+..+.. .. ++|++..+++++.|+.|+.||..+|+.+..+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 00111 345677888899999999999999888776531 23 567888999999999999999999998776653
No 223
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.34 E-value=2.2e-09 Score=103.45 Aligned_cols=194 Identities=8% Similarity=-0.022 Sum_probs=127.4
Q ss_pred ecCCeEEEEeC-CCeEEEEec-CCCeeEEeeecCCce------------eEEEEec-CCC----EEEEEeCCeEEEEEcC
Q 014104 120 MKRGLILTGVG-DKVMRLWSL-EGYKCVEEYSLPNAA------------SLVDFDF-DES----KIVGLIGTRICIWRRN 180 (430)
Q Consensus 120 ~~~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~-~~~----~l~~~~~~~i~vwd~~ 180 (430)
..++.++.++. ++.|.-+|. .+|+.+..+...... ..++++| ++. .++++.++.+.-+|.+
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 34677777887 899999999 899999887754221 1245543 333 4448889999999999
Q ss_pred CCcccccCCCCc-----eeeeeEEEEcCCceEEEe------cCCeEEEEECCCCeeeEEeecCCCC--------------
Q 014104 181 GLRSVFPSREGT-----FMKGLCMRYFDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHCAP-------------- 235 (430)
Q Consensus 181 ~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~-------------- 235 (430)
+++.++...... .....-.. .+..+++++ .+|.|+.+|.++|+.+..+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 998765432211 11111111 234466655 3799999999999998777532111
Q ss_pred -----------------------e-EEEEecCC-CEEEEEeCC----------------CeEEEEeCCCCceeEEEecCC
Q 014104 236 -----------------------V-TSLSLSED-QLIISGSSL----------------GSIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 236 -----------------------i-~~~~~~~~-~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~ 274 (430)
+ ..+++.+. +.++.++.+ +.|..+|..+|+.+..++..+
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 12344443 667766654 489999999999998887532
Q ss_pred CC--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 275 CT--------GIKTLCYN-PCS---RLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 275 ~~--------~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.. ...-+... .+| ..++.++.+|.++++|.++++.+....
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 21 11112222 467 467788999999999999999887654
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=1.4e-10 Score=104.71 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=160.9
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFD 162 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~ 162 (430)
..+.++..-..+ .+.+ +++ +++.+. .++.|.+||+.+++.+.++..+ .....+.++||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 455566544445 5777 566 666664 3789999999999999998764 24567999999
Q ss_pred CCEEE-EEe--CCeEEE--EEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC-----CeeeE----
Q 014104 163 ESKIV-GLI--GTRICI--WRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS-----RKCSQ---- 227 (430)
Q Consensus 163 ~~~l~-~~~--~~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~-----~~~~~---- 227 (430)
|++++ +.. +..+.+ +|..+ ......... ..+.+.+.. +++.+.||.+.+.|+.+ ++...
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE-EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred CCEEEEEccCCCCeEEEEEEchhh-ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 99988 443 467888 88877 211111111 112233333 56677888988899886 44331
Q ss_pred EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeEEEecC------C---CCCeEEEEEecCCCEEEEEeC-
Q 014104 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ--RVATLRST------D---CTGIKTLCYNPCSRLVFAGTT- 295 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~- 295 (430)
.+.....+. ...++..++..+. +.+.+.|..++. .+..+... + ......++++|+++.++++..
T Consensus 209 ~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111122333 3334455555566 999999986532 22222110 0 012222689999998887543
Q ss_pred C--------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 A--------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 d--------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
. +.+.++|+.+++.+.++.... ...++. ++|||+ .+++.. .++.|.++|+.+++.+.++.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~-~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE-ECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 2 356799999999998887653 578888 999998 456665 589999999999999999876443
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.32 E-value=6.8e-09 Score=91.52 Aligned_cols=196 Identities=8% Similarity=-0.081 Sum_probs=128.0
Q ss_pred CceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeE-
Q 014104 152 NAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQ- 227 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~- 227 (430)
.....++++++++..++. .++.|.+||.. ++...............+... +...++...++.|..+|.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 456678889999877755 57899999988 442211111111223334333 3334444447889999987 55432
Q ss_pred EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 228 IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
.+......+..+++.++ .++++...++.|..+|.. ++............+..++++++|++.++...++.|..+|. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 22223457889999865 566665567899999987 65542222113457899999999997766666788999998 5
Q ss_pred Cceee-eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 307 MKSLW-ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 307 ~~~~~-~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
++... ....+...+..++ ++++|.+.++....+.|.+||. +++..
T Consensus 176 g~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp CCEEEEECSSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CcEEEeeCCCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 55432 1223345678888 8899987777777788999998 45543
No 226
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.32 E-value=1e-12 Score=82.52 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=40.5
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLL 67 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~ 67 (430)
+.+...+..||+|++.+||+||++.++.++++|||+|+.++.++.+|+.+
T Consensus 3 ~~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ------CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 34567889999999999999999999999999999999999999999875
No 227
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.32 E-value=2e-09 Score=95.19 Aligned_cols=201 Identities=7% Similarity=0.076 Sum_probs=128.7
Q ss_pred eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 154 ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 154 ~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.....|++++..|+ ...++.|..||.++++........ ....+++.+.+. ++++. ++.|.+||..+++.......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA-PVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSS-CEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC-ceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEec
Confidence 34577888766655 345788999999887643222222 223344444444 55555 56899999988765433322
Q ss_pred C----CCCeEEEEecCC-CEEEEEeC-----------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEe
Q 014104 232 H----CAPVTSLSLSED-QLIISGSS-----------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGT 294 (430)
Q Consensus 232 ~----~~~i~~~~~~~~-~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 294 (430)
. ...+..++++|+ ++.++... .+.|..+|.. ++...... .......++|+|+++.|+ +.+
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~--~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD--QVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE--EESBEEEEEECTTSCEEEEEEG
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee--ccccccceEEcCCCCEEEEecC
Confidence 1 234788999976 54443321 2345555543 33333222 233578999999998765 555
Q ss_pred CCCeEEEEeC--CCCce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 295 TAGYASCWDL--RTMKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 295 ~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.++.|.+||+ .++.. +..+..+.+....++ ++++|.+.++....+.|..||..+|+.+..+..+..
T Consensus 169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~-~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC-IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE-EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE-ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 6788999987 44432 223333445678888 999998878777788999999999999988876433
No 228
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.32 E-value=6.2e-09 Score=100.43 Aligned_cols=195 Identities=11% Similarity=0.027 Sum_probs=123.2
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce----------eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
..++.++.++.++.|..+|..+|+.+..+...... ...++ .++..++++.++.+.-+|.++++.++...
T Consensus 66 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred EECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 45777777777556999999999999888754221 11222 24444448889999999999998665432
Q ss_pred CCc------eeeeeEEEEc---CC-ceEEEe------cCCeEEEEECCCCeeeEEeecCCCCe-----------------
Q 014104 190 EGT------FMKGLCMRYF---DP-EAVVGC------EDGTARVFDMYSRKCSQIIRMHCAPV----------------- 236 (430)
Q Consensus 190 ~~~------~~~~~~~~~~---~~-~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i----------------- 236 (430)
... ....-.+... +. .+++++ .+|.|..+|..+|+.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 211 1111111111 11 455655 37899999999999887654311000
Q ss_pred ------------------------EEEEecCC-CEEEEEeC--------------------C----CeEEEEeCCCCcee
Q 014104 237 ------------------------TSLSLSED-QLIISGSS--------------------L----GSIAISGLSSDQRV 267 (430)
Q Consensus 237 ------------------------~~~~~~~~-~~l~~~~~--------------------d----g~i~vwd~~~~~~~ 267 (430)
..+++++. +.++.++. | +.|..+|..+|+.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 12344443 56665552 2 68999999999999
Q ss_pred EEEecC-CCC-------CeEEEEEe-cCCC---EEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 268 ATLRST-DCT-------GIKTLCYN-PCSR---LVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 268 ~~~~~~-~~~-------~v~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
..++.. |.. ...-+... .+|+ .++.++.+|.++++|.++++.+.....
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 888642 210 11112222 4674 788899999999999999998876544
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=5.8e-10 Score=110.66 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=149.1
Q ss_pred ccccceeEEEe-cCC-eEEE-----EeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCC--------
Q 014104 110 AHSVGVDQCRM-KRG-LILT-----GVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGT-------- 172 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~-------- 172 (430)
+|...+..+.| +|| +||- |+...+|++||+.+++.+.... +.. ...++|+ |++.|+ ++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 35556777788 566 5553 2333579999999998665321 112 3457899 999888 66553
Q ss_pred -----eEEEEEcCCCcc----cccCCC--CceeeeeEEEEcCCceEEEec----CCeEEEEECCCCe-eeEEeecCCCCe
Q 014104 173 -----RICIWRRNGLRS----VFPSRE--GTFMKGLCMRYFDPEAVVGCE----DGTARVFDMYSRK-CSQIIRMHCAPV 236 (430)
Q Consensus 173 -----~i~vwd~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~~~i 236 (430)
.|++|++.+... ++.... ........+++++..++.... +..|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999987652 222222 112233556666776543332 2589999998764 455566666665
Q ss_pred EEEEecCCC-EEEEEeCC---CeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEeCCCC
Q 014104 237 TSLSLSEDQ-LIISGSSL---GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCWDLRTM 307 (430)
Q Consensus 237 ~~~~~~~~~-~l~~~~~d---g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~ 307 (430)
.....++++ +++....+ +.|..+|+.++.. ...+.. +...+. .|+++++.|+.... ++ .|++||+..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555333454 44444443 6899999987654 344544 444454 88999998876654 43 6899998844
Q ss_pred ceeeeeec-CCCceEEEEEeeCCCCeEEEEcCC----CeEEEEEcCCCce
Q 014104 308 KSLWETRI-SPNVVYSLQHLQNDTSTLVVGGID----GVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~d----g~i~vwd~~~~~~ 352 (430)
....+.. ..+.+..+. +++++..++....+ +.++.||+.+++.
T Consensus 361 -~~~~l~~p~~~~~~~~~-~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFN-GKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -EEEEECCSSSSEEEECC-CCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -eeEEeecCCCceEEeee-cCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 3444432 345677776 78888876655444 8999999987764
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=5.7e-11 Score=107.54 Aligned_cols=148 Identities=15% Similarity=0.031 Sum_probs=111.4
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCe-----------eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----------CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
...+++......+++|+.+ .+.+|++...+ ..... .+.+ |+.++| .+.+++++ .++.|++||+.
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESS
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEch
Confidence 4456666667778888887 56669865432 11222 3566 999999 66888888 88999999998
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
+......... +...+.++.+.+. .+++++.||.|.+||+.+++... +...|.+++ |+|+| ++.|..||++
T Consensus 115 sl~~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~-WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 115 ELSEFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD-VTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp STTCEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE-ECSSE--EEEEETTSCE
T ss_pred hhhccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE-EcCCc--eEEEEcCCcE
Confidence 7766555554 6667888777643 48888999999999999877643 346799998 99999 6778899999
Q ss_pred EEEEcCCCce--EEEE
Q 014104 343 RVLDQNTGEV--LSRC 356 (430)
Q Consensus 343 ~vwd~~~~~~--~~~~ 356 (430)
++|+...++. .+++
T Consensus 185 ~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEcCCCcccccccee
Confidence 9999887765 5555
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=9.2e-09 Score=92.16 Aligned_cols=214 Identities=11% Similarity=0.043 Sum_probs=139.8
Q ss_pred eeEEEe-cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-ccCCC
Q 014104 115 VDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSRE 190 (430)
Q Consensus 115 v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~ 190 (430)
.....| ++ + ++++...++.|..||..+++.. .+..+..+..+.++++++.++++ +..|.+||.++++.. +....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCC
Confidence 456667 43 4 6667777899999999887643 34445667778999999888766 455999999877632 21111
Q ss_pred ----CceeeeeEEEEcCCceEEEec-------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEE
Q 014104 191 ----GTFMKGLCMRYFDPEAVVGCE-------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIA 257 (430)
Q Consensus 191 ----~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~ 257 (430)
......+.+.+.+. ++.++. .+.|..+| +++... +..+......++|+|+ +.+ ++.+.++.|.
T Consensus 129 ~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp TTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 11222333444444 444442 25666667 455433 3223345678999976 545 4445678999
Q ss_pred EEeCC--CC-ce-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee-C
Q 014104 258 ISGLS--SD-QR-----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ-N 328 (430)
Q Consensus 258 vwd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s-~ 328 (430)
+||+. ++ .. ...+.. ....+..++++++|++.++...++.|.+||. +++.+..+..+...+.+++ |+ +
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a-f~g~ 281 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPA-FIGP 281 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEE-EEST
T ss_pred EEEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEE-EecC
Confidence 99986 55 32 222221 2346788999999987777766788999998 5777777777766789998 87 8
Q ss_pred CCCeEEEEc
Q 014104 329 DTSTLVVGG 337 (430)
Q Consensus 329 ~~~~l~s~~ 337 (430)
+++.|+.++
T Consensus 282 d~~~L~vt~ 290 (326)
T 2ghs_A 282 DASRLLVTS 290 (326)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEe
Confidence 887665544
No 232
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.26 E-value=1.3e-08 Score=98.18 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=156.7
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC-----ceeEEEEecCCCEEEEEe------CCeEEEEEcCCCcccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVF 186 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~ 186 (430)
+.+.++.++.++.|+.+..+|..+|+.+..+.... .....-.-.++..++++. ++.|..+|.++++.++
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 34456788889999999999999999988776543 111111112444444554 7899999999888654
Q ss_pred cCCCCcee---------------------------------------eeeEEEEcCCceEEEecC---------------
Q 014104 187 PSREGTFM---------------------------------------KGLCMRYFDPEAVVGCED--------------- 212 (430)
Q Consensus 187 ~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d--------------- 212 (430)
........ ...++......++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 32211100 012222223345555432
Q ss_pred -CeEEEEECCCCeeeEEeecC----------CCCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--
Q 014104 213 -GTARVFDMYSRKCSQIIRMH----------CAPVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC-- 275 (430)
Q Consensus 213 -g~i~vwd~~~~~~~~~~~~~----------~~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-- 275 (430)
+.|..+|..+|+.+..++.. ..++. +... .+ ..++.++.+|.+.++|..+|+.+..++....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 36999999999998877632 12221 2221 23 2567788999999999999999877653220
Q ss_pred ----------CCe--------------------------EEEEEecCCCEEEEEe-------------------------
Q 014104 276 ----------TGI--------------------------KTLCYNPCSRLVFAGT------------------------- 294 (430)
Q Consensus 276 ----------~~v--------------------------~~~~~~~~~~~l~~~~------------------------- 294 (430)
.++ ..++++|+..++++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 111 2467888877777653
Q ss_pred ------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 295 ------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 295 ------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
.+|.|..||+.+++.+.++.... .+.+.. +...+..++.++.||.|+.+|.++|+.+.++....
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~-~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Ccccee-EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 34789999999999988876432 222222 23346678889999999999999999999887643
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.26 E-value=4.4e-10 Score=100.85 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=159.1
Q ss_pred cccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
+...+.++.. +++.+..++.+ |..+|. +++.+..+..+... ....+. ++...+++.++.+..+|.+ ++.....
T Consensus 58 ~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3444566666 46677777666 888886 56655444433221 122333 5555557778999999988 5543322
Q ss_pred CC-CceeeeeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 014104 189 RE-GTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 189 ~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
.. .... .+.... +..++.++.++.|..+|.. ++.+..+......+.++...++..+..++ +.+..+| .+++.
T Consensus 133 ~~~~~~~--~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIY--ATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCC--SCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE
T ss_pred cCCCcee--eeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE
Confidence 11 1111 122223 4448888888999999998 88777776555666777776555566666 8899999 77887
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
...+.. ....+.++..+++|. |..++.++.+..+|. +++.+..+......+.++. ..+++ .|..++.+|.|..+|
T Consensus 207 ~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 207 KWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPV-IGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCE-ECTTS-CEEEECTTCEEEEEC
T ss_pred EEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccce-EcCCC-eEEEecCCCCEEEEC
Confidence 777764 445688888888775 555667788988884 5666666655444444554 55455 577788888999999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
. +++.+..+......+..+....+|.+.+
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGTIYF 310 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCEEEE
Confidence 6 6888777765444444444445555543
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=5.1e-09 Score=92.87 Aligned_cols=232 Identities=10% Similarity=0.037 Sum_probs=146.3
Q ss_pred CCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEe-CCeEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLI-GTRIC 175 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~i~ 175 (430)
+...+..+..+........| +++ +++++..++.|..|+. +++. ..+. .......++++++|+.+++.. ++.|.
T Consensus 33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 34455566666666777887 454 5777778899999998 4443 3333 334567799999999777654 47899
Q ss_pred EEEcCCCcccccCC-CCc---eeeeeEEEEcCCceEE----Eec-------------CCeEEEEECCCCeeeEEeecCCC
Q 014104 176 IWRRNGLRSVFPSR-EGT---FMKGLCMRYFDPEAVV----GCE-------------DGTARVFDMYSRKCSQIIRMHCA 234 (430)
Q Consensus 176 vwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~ 234 (430)
+|+.+.....+... .+. ....+.+.+.+...++ |.. .+.|..+|..+++..... ...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 111 RSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp EECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred EECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 99987332222111 111 1122444444443443 321 356888887667654333 334
Q ss_pred CeEEEEecCC-CEEEEEeCC------CeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 235 PVTSLSLSED-QLIISGSSL------GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~d------g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....++|+|+ +.++.+... +.|.+||+..+.. ...+.......+..++++++|++ .+++.+| |.+||..
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD 266 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC
Confidence 5678999987 556666554 7899999876541 11222112335667899999994 4444554 9999984
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
++.+..+..+. .+.+++ |+++++.|+.++.++.
T Consensus 267 -g~~~~~~~~~~-~~~~~~-f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 267 -GQLLGHIPTPG-TASNCT-FDQAQQRLFITGGPCL 299 (305)
T ss_dssp -SCEEEEEECSS-CCCEEE-ECTTSCEEEEEETTEE
T ss_pred -CCEEEEEECCC-ceeEEE-EeCCCCEEEEEcCCeE
Confidence 77777776554 578888 8899988888776643
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=7.2e-10 Score=100.05 Aligned_cols=246 Identities=6% Similarity=-0.076 Sum_probs=160.6
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccCCC--------Cce
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GTF 193 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~~~--------~~~ 193 (430)
+|.+.|..+++.+.++...... .+.++||++.++ +. .++.|.+||+.+.+.+..... +..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8889999999999999876555 799999999988 43 368899999999875433211 122
Q ss_pred eeeeEEEEcCCceEEEec--CCeEEE--EECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-----C
Q 014104 194 MKGLCMRYFDPEAVVGCE--DGTARV--FDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-----D 264 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~ 264 (430)
...+.+++++..++++.. +..+.+ +|+.+ +..+..- +.+ .+.......+++.+.|+.+.+.|+.+ +
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cce-EEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 345778888888888774 467888 99876 4444321 111 11111235666777889988899886 3
Q ss_pred ceeEE----EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeeeeec-------C---CCceEEEEEeeC
Q 014104 265 QRVAT----LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK--SLWETRI-------S---PNVVYSLQHLQN 328 (430)
Q Consensus 265 ~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~v~~l~~~s~ 328 (430)
+.... +.. ...+. . .+++..++..+. +.|.+.|+.... .+..+.. + ......++ ++|
T Consensus 201 ~v~~~~t~~i~v-g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~-~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNC-SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA-KLK 273 (368)
T ss_dssp ECCCCSCTTSCB-CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE-EET
T ss_pred eEEEEeeeeeeC-CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE-EcC
Confidence 33211 111 12233 3 666666666566 889999986532 2222211 0 01111255 899
Q ss_pred CCCeEEEEcC---------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 329 DTSTLVVGGI---------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 329 ~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
+++.++.+.. ++.+.++|+.+++.+.++.... ..
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-------------------------------------~p 316 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-------------------------------------DS 316 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-------------------------------------EE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-------------------------------------Cc
Confidence 9998876543 2356699999999998887532 24
Q ss_pred eEEEE--cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 400 TCLAV--GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 400 ~~v~~--~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
.++++ ||+ .+++.. .++.|.|+|+.+++.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 45555 565 467777 699999999988753
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=2.6e-08 Score=89.23 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=123.4
Q ss_pred eEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-
Q 014104 155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM- 231 (430)
Q Consensus 155 ~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 231 (430)
....|+++++.++ ...++.|..||.++++........ ....+.+.+.+. +++++.+ .|.+||..+++.......
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-~v~~i~~~~dg~-l~v~~~~-gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPF-MGSALAKISDSK-QLIASDD-GLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS-CEEEEEEEETTE-EEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCC-cceEEEEeCCCe-EEEEECC-CEEEEECCCCcEEEEeeCC
Confidence 4467888766655 445789999999887643222222 233344555544 4445544 499999988775433221
Q ss_pred --C-CCCeEEEEecCC-CEEEEEeC------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 014104 232 --H-CAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYAS 300 (430)
Q Consensus 232 --~-~~~i~~~~~~~~-~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 300 (430)
. ...+.+++++|+ +++++... .+.|..+| +++...... .......++|+|+|+.++.+ ..++.|.
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 1 235789999976 54443322 25666666 455433222 23357889999999877554 4578899
Q ss_pred EEeCC--CC-ce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 301 CWDLR--TM-KS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 301 i~d~~--~~-~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+||+. ++ +. +..+........++. ++++|.+.++...++.|.+||. +++.+..+..+
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeE-ECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 99986 55 32 222222345567787 8999987777766789999998 57777776643
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.22 E-value=9.7e-09 Score=86.54 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=136.2
Q ss_pred EEEEeccccc--eeEEEecCC-eEEEEeCCC--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEE
Q 014104 105 IDQWKAHSVG--VDQCRMKRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~--v~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vw 177 (430)
++++ .|... ...+.|.++ ++.+.+.+| .|+++|+.+++.+..+..+.......+.++++.|. ...++.+.++
T Consensus 34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4455 45443 467888877 556666665 99999999999999998876665555666677777 4458999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--C---CCeEEEEecCCCEEEEEeC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~ 252 (430)
|.++.+.+-....+. ....+++++..++.+..++.|.++|..+.+.+..+... . ..++.+.+..+...+....
T Consensus 113 D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp ETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred ECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 999887543222221 23456677777777777889999999999888777642 1 3345677776665555557
Q ss_pred CCeEEEEeCCCCceeEEEecC-----------CCCCeEEEEEecCCCEEEEEeCC
Q 014104 253 LGSIAISGLSSDQRVATLRST-----------DCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
++.|.+.|..+++.+..+... ...-...++|+|+++.|++.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 889999999999999888742 01256889999998888776653
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1e-07 Score=93.81 Aligned_cols=240 Identities=11% Similarity=0.115 Sum_probs=158.5
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEEEecCCCEEEEEe------CCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~ 187 (430)
.+.++.++.++.|+.|..+|..+|+.+..+..... ....-.-.++..+++.. ++.|..+|.++++.++.
T Consensus 114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 34566888899999999999999999988775311 11100112444444433 58899999999886543
Q ss_pred CCCC----c----------------------------eeeeeEEEEcCCceEEEecCC-------------------eEE
Q 014104 188 SREG----T----------------------------FMKGLCMRYFDPEAVVGCEDG-------------------TAR 216 (430)
Q Consensus 188 ~~~~----~----------------------------~~~~~~~~~~~~~l~~~~~dg-------------------~i~ 216 (430)
.... . .-....+.+....++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2210 0 000123333345577777666 499
Q ss_pred EEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--------
Q 014104 217 VFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------- 275 (430)
Q Consensus 217 vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------- 275 (430)
.+|..+|+.+..++. |. .+.....+. .+ ..++.++.+|.+.++|..+|+.+...+....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999999999888764 21 222222222 33 2688999999999999999998855432110
Q ss_pred ---CCe------------------------EEEEEecCCCEEEEEe----------------------------------
Q 014104 276 ---TGI------------------------KTLCYNPCSRLVFAGT---------------------------------- 294 (430)
Q Consensus 276 ---~~v------------------------~~~~~~~~~~~l~~~~---------------------------------- 294 (430)
.++ ..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 000 1267888777666421
Q ss_pred --CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 295 --TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 295 --~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
.+|.|..||+.+++.+.+...+. ...... ....+.+++.++.||.|+.||.++|+.+..+....
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~-~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPT-HWNGGT-LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESS-SCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCccceEEEEeCCCCcEEEEccCCC-CCcCce-eEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 23789999999999988876543 233222 44567889999999999999999999999988653
No 239
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.20 E-value=2.2e-08 Score=83.70 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=136.9
Q ss_pred eEEEEecccc--ceeEEEecCC-eEEEEeCC--CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEE
Q 014104 104 DIDQWKAHSV--GVDQCRMKRG-LILTGVGD--KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~--~v~~~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~v 176 (430)
.+.++ .|.. -...+.|.++ ++.+.+.+ ..|+++|+.+++.+..+..+.......+.+.++.|. ...++.+.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34455 5654 3558899888 55555554 499999999999999998876665555666677776 455899999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEe
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGS 251 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~ 251 (430)
||.++.+.+-....+. ....++.++..|+.+..++.|.++|..+.+.+..+.... ..++.+.+..+..++...
T Consensus 90 ~D~~tl~~~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw 167 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW 167 (243)
T ss_dssp EETTTTEEEEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EECCcCcEEEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEEC
Confidence 9999987543222221 235666778778887789999999999998888776421 345677777666555555
Q ss_pred CCCeEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.+..|.+.|..+++.+..+... ...-.+.++++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7889999999999999887732 1125688999998887776654
No 240
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=6.3e-09 Score=103.25 Aligned_cols=197 Identities=10% Similarity=0.067 Sum_probs=127.0
Q ss_pred eeEEEEecCCCEEE-EEe-C----CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-------------e
Q 014104 154 ASLVDFDFDESKIV-GLI-G----TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-------------T 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~-~----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------~ 214 (430)
...++|+|||++|+ +.. . ..|++||+++++.+............+|+ ++..|+.++.+. .
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 44578999999988 332 2 46999999998854322111112456788 888888887774 4
Q ss_pred EEEEECCCCee----eEEeec-CCCCeEEEEecCC-CEEEE-Ee---CCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEE
Q 014104 215 ARVFDMYSRKC----SQIIRM-HCAPVTSLSLSED-QLIIS-GS---SLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 215 i~vwd~~~~~~----~~~~~~-~~~~i~~~~~~~~-~~l~~-~~---~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~ 283 (430)
|++|++.++.. +..... |...+..+.++|+ ++++. .+ .+..|.++|+.++. ....+.. +....... +
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~~~-~ 287 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADVSL-V 287 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCEEE-E
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceEEE-E
Confidence 99999987643 222233 4456788999986 55543 33 23589999998764 3445554 34444444 6
Q ss_pred ecCCCEEE-EEeCC---CeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceEE
Q 014104 284 NPCSRLVF-AGTTA---GYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVLS 354 (430)
Q Consensus 284 ~~~~~~l~-~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~ 354 (430)
+++|..|+ ....+ +.|..+|+.++.. ...+..|...+. . ++++++.|+....++ .|++||+. +....
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~-~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~ 363 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T-VHSGSGYLFAEYMVDATARVEQFDYE-GKRVR 363 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E-EEEETTEEEEEEEETTEEEEEEECTT-SCEEE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E-EEEECCEEEEEEEECCeeEEEEEECC-CCeeE
Confidence 66666555 44333 6799999987654 345556665554 5 888898887766443 68999987 44455
Q ss_pred EEE
Q 014104 355 RCV 357 (430)
Q Consensus 355 ~~~ 357 (430)
.+.
T Consensus 364 ~l~ 366 (693)
T 3iuj_A 364 EVA 366 (693)
T ss_dssp EEC
T ss_pred Eee
Confidence 554
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.17 E-value=1e-07 Score=91.77 Aligned_cols=234 Identities=15% Similarity=0.121 Sum_probs=152.0
Q ss_pred EEEEeCCCeEEEEecCCCeeEEeeecCC-----ceeEEEEecCCCEEEEE------eCCeEEEEEcCCCcccccCCCCce
Q 014104 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASLVDFDFDESKIVGL------IGTRICIWRRNGLRSVFPSREGTF 193 (430)
Q Consensus 125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~------~~~~i~vwd~~~~~~~~~~~~~~~ 193 (430)
++.++.|+.+..+|..+|+.+....... .....-.-.++..++++ .++.|.-+|.++++.++.......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 9999999999999999999988776533 11111111245444444 378999999999886543222110
Q ss_pred e---------------------------------------eeeEEEEcCCceEEEecC----------------CeEEEE
Q 014104 194 M---------------------------------------KGLCMRYFDPEAVVGCED----------------GTARVF 218 (430)
Q Consensus 194 ~---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~i~vw 218 (430)
. ....+......++.+..+ +.|..+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 0 011222233446666654 489999
Q ss_pred ECCCCeeeEEeecCC----------CCeEEEEec--CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCC---------
Q 014104 219 DMYSRKCSQIIRMHC----------APVTSLSLS--ED---QLIISGSSLGSIAISGLSSDQRVATLRSTD--------- 274 (430)
Q Consensus 219 d~~~~~~~~~~~~~~----------~~i~~~~~~--~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------- 274 (430)
|..+|+.+..++... .++. +... .+ ..++.++.+|.+.++|.++|+.+.......
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 362 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD 362 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred eCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence 999999988776432 1222 2321 23 367778899999999999999987765211
Q ss_pred ---CCCe--------------------------EEEEEecCCCEEEEEe-------------------------------
Q 014104 275 ---CTGI--------------------------KTLCYNPCSRLVFAGT------------------------------- 294 (430)
Q Consensus 275 ---~~~v--------------------------~~~~~~~~~~~l~~~~------------------------------- 294 (430)
..++ ..++++|+..++++..
T Consensus 363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p 442 (599)
T 1w6s_A 363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP 442 (599)
T ss_dssp TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence 0011 2456777766665431
Q ss_pred --------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 295 --------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 295 --------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
..|.|..||+.+++.+.+..... +..+-. ....+.+++.++.||.++.||.++|+.+.++.....
T Consensus 443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~-~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp TSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcc-eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 34789999999999888765322 121111 223567788899999999999999999999876443
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.16 E-value=6.7e-08 Score=82.49 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=141.9
Q ss_pred eEEEEecccc--ceeEEEecC-CeEEEEe-C--CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEE
Q 014104 104 DIDQWKAHSV--GVDQCRMKR-GLILTGV-G--DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~--~v~~~~~~~-~~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~ 175 (430)
.+.++ .|.. ....+.|++ +.|+.++ . ++.|.+.|+.+++.+..+..+.......+.++++.|. .-.++.+.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 34455 3543 357888854 7444443 2 5899999999999999988655444445555677776 44478999
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEE
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISG 250 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~ 250 (430)
++|.++.+.+-....+ ......+++++..++++..++.|.++|..+.+.+..+.... ..++.+.+.++...+..
T Consensus 90 viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp EEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 9999988754333222 11235677788888877788999999999998887776321 23667888755445555
Q ss_pred eCCCeEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCC
Q 014104 251 SSLGSIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTM 307 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 307 (430)
..++.|.+.|..+++.+..+... .......++|+|+++.++ ++...+.|...++...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 56889999999999999888731 013568999999987555 5556788888887654
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.16 E-value=4.6e-08 Score=88.27 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=122.7
Q ss_pred CceeEEEEecCCCEEEEE---eCCeEEEEEcCCCccc-cc----CCCCceeeeeEEEEcCC-ceEEEec------CCeEE
Q 014104 152 NAASLVDFDFDESKIVGL---IGTRICIWRRNGLRSV-FP----SREGTFMKGLCMRYFDP-EAVVGCE------DGTAR 216 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~-~~----~~~~~~~~~~~~~~~~~-~l~~~~~------dg~i~ 216 (430)
.....++++++++.+++. .++.+++|.+.+++.. +. ....+...+..+..+.. .|.+... ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 455667788888777643 1232444444333321 11 11122334455555432 2544432 47899
Q ss_pred EEECCCCeeeEEeecC------CCCeEEEEecC-CCEE-EEEe---CCCeEEEEeCCCCceeEEEecC------------
Q 014104 217 VFDMYSRKCSQIIRMH------CAPVTSLSLSE-DQLI-ISGS---SLGSIAISGLSSDQRVATLRST------------ 273 (430)
Q Consensus 217 vwd~~~~~~~~~~~~~------~~~i~~~~~~~-~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~------------ 273 (430)
+||+.+++.+..+... ...+..+++++ +..+ ++.. .++.|.+||+.+++..+.+..+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 9999999877766532 23468899985 3444 4444 5789999999888776655320
Q ss_pred ----------------CCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCC---Cc-----eee--eeecCCCceEEEEEe
Q 014104 274 ----------------DCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRT---MK-----SLW--ETRISPNVVYSLQHL 326 (430)
Q Consensus 274 ----------------~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~---~~-----~~~--~~~~~~~~v~~l~~~ 326 (430)
....+..++|+|+|+.|+.+..++ .+..++... +. ... ...++.+....++ +
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia-~ 255 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS-I 255 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE-E
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE-E
Confidence 002368899999999888877665 555555321 11 011 1123334556777 9
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+++|.++++...++.|.+||..+|+.
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCE
Confidence 99999999998999999999856754
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.14 E-value=1.6e-08 Score=85.23 Aligned_cols=187 Identities=10% Similarity=0.082 Sum_probs=133.8
Q ss_pred EEEEeccccc--eeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEc
Q 014104 105 IDQWKAHSVG--VDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~--v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~ 179 (430)
++++ .|... ...+.|.++ +.++.+.+|.|+++|+++++.+..+ .+.......+.++++.|. ...++.+.+||.
T Consensus 46 v~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 46 IREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEET
T ss_pred EEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEEC
Confidence 4455 45433 468888877 6777788889999999999999888 655554444566666666 445899999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~dg 254 (430)
++.+.+-...... ....+++++..|+.+..++.|.++|.++.+.+..+.... ..++.+.|..+...+....+.
T Consensus 124 ~Tl~~~~ti~~~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~ 201 (268)
T 3nok_A 124 MPPQRERTTRYSG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS 201 (268)
T ss_dssp TTTEEEEEEECSS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS
T ss_pred CcCcEEEEEeCCC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC
Confidence 9987543222221 234556778888877779999999999998888776321 245677887666555555788
Q ss_pred eEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 255 SIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.|.+.|..+++.+..+... ...-...++++|+++.|++.+.
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999999998887642 1135688999998766665544
No 245
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=4.6e-08 Score=86.67 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=121.7
Q ss_pred CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeE
Q 014104 151 PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 227 (430)
........|+++++.|+ ...++.|..|+..+....+.... .....+.+...+. ++++. .++.|.+||.. ++...
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~-~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDAT-AFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESC-SCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCC-CccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEE
Confidence 34456688999999555 45578899999854433333222 2233344444444 44444 45789999985 55332
Q ss_pred EeecC----CCCeEEEEecCC-CEEEE----EeC-------------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 228 IIRMH----CAPVTSLSLSED-QLIIS----GSS-------------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 228 ~~~~~----~~~i~~~~~~~~-~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
..... ...+..++++++ .+.++ |.. .+.|..+|..+++..... . ......++|+|
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~p~gl~~sp 197 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDHPNGLAFSP 197 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESSEEEEEECT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCCCcceEEcC
Confidence 22111 124667889876 55554 332 357888888777654333 2 23578899999
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeee---e-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 286 CSRLVFAGTTA------GYASCWDLRTMKSLWE---T-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 286 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~---~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
+++.|+.+... +.|.+|++..+. +.. + ....+....+. ++++|++. +++.+ .|.+||. +++.+..
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~-~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFC-VDRGGWLW-SSSGT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEE-ECTTSCEE-ECCSS-EEEEECT-TSCEEEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEE-ECCCCCEE-EecCC-cEEEECC-CCCEEEE
Confidence 99988877665 689999987543 211 1 11223445677 88999844 44444 4999998 4777777
Q ss_pred EEe
Q 014104 356 CVM 358 (430)
Q Consensus 356 ~~~ 358 (430)
+..
T Consensus 273 ~~~ 275 (305)
T 3dr2_A 273 IPT 275 (305)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=5.1e-08 Score=91.75 Aligned_cols=246 Identities=7% Similarity=-0.005 Sum_probs=165.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeec---------------------------------C-------CceeEEEEec--
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSL---------------------------------P-------NAASLVDFDF-- 161 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------------~-------~~~~~~~~~~-- 161 (430)
-+.||+..|.++|+-+.+++.++.+.. . +......+|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477888999999999988888776540 0 1112255665
Q ss_pred ---CCCEEEEE--eCCeEEEEEcCCCcccc--cCCCCceeeeeEE-E-EcCCceEEEe------------------cCCe
Q 014104 162 ---DESKIVGL--IGTRICIWRRNGLRSVF--PSREGTFMKGLCM-R-YFDPEAVVGC------------------EDGT 214 (430)
Q Consensus 162 ---~~~~l~~~--~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~-~-~~~~~l~~~~------------------~dg~ 214 (430)
||++++.+ .++.|.+.|+++.+... ....+.....+.+ . +++.++++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 88888733 35679999999987432 4444443444444 2 5666676663 3568
Q ss_pred EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC--------------------------------------e
Q 014104 215 ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG--------------------------------------S 255 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg--------------------------------------~ 255 (430)
+.++|..+.+.+.++..-. ....++++|+ +++++++.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999998888776322 3455667765 6666665332 4
Q ss_pred EEEEeCCC--Cce-eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCc------------eeeeeecCCCc
Q 014104 256 IAISGLSS--DQR-VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMK------------SLWETRISPNV 319 (430)
Q Consensus 256 i~vwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~ 319 (430)
|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+.+.... ..
T Consensus 256 V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~g 332 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LG 332 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SC
T ss_pred EEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CC
Confidence 78888887 545 556653 33678899999999887655 57889999999653 23344333 44
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCC----------CceEEEEEeccCcc-----eeeeccCCceE
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNT----------GEVLSRCVMDIGSA-----SSSSNKVSGVI 374 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~-----~~~~~s~d~~v 374 (430)
...++ |+|+|...++.-.|+.|.+||+.+ .+.+.++..|.+.- ...+.++||+-
T Consensus 333 P~h~a-F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 333 PLHTA-FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp EEEEE-ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred cceEE-ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence 67787 999995445666899999999987 56788888765532 22344667754
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.06 E-value=1e-07 Score=91.86 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=153.7
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----ee-EEEEec---CCC-EEE-EE------eCCeEEEEEcCC
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----AS-LVDFDF---DES-KIV-GL------IGTRICIWRRNG 181 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~-~~~~~~---~~~-~l~-~~------~~~~i~vwd~~~ 181 (430)
.+.++.++.++.|+.|..+|..+|+.+..+..... .. .-.+.. +++ .++ ++ .++.|.-+|.++
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34567888899999999999999999887765321 11 111111 233 444 33 268899999998
Q ss_pred CcccccCCCCce------------------------------------------eeeeEEEEcCCceEEEec--------
Q 014104 182 LRSVFPSREGTF------------------------------------------MKGLCMRYFDPEAVVGCE-------- 211 (430)
Q Consensus 182 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~l~~~~~-------- 211 (430)
++.++..+.... -...++.+....++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 886554322100 001122222334555542
Q ss_pred ------------C----CeEEEEECCCCeeeEEeec--CC--------CCeEEEEec--CC---CEEEEEeCCCeEEEEe
Q 014104 212 ------------D----GTARVFDMYSRKCSQIIRM--HC--------APVTSLSLS--ED---QLIISGSSLGSIAISG 260 (430)
Q Consensus 212 ------------d----g~i~vwd~~~~~~~~~~~~--~~--------~~i~~~~~~--~~---~~l~~~~~dg~i~vwd 260 (430)
| +.|..+|..+|+.+..++. |. .++. +... ++ ..++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 6899999999999888753 21 1222 2221 23 3688899999999999
Q ss_pred CCCCceeEEEecCCC------------CC--------------------------------eEEEEEecCCCEEEEEe--
Q 014104 261 LSSDQRVATLRSTDC------------TG--------------------------------IKTLCYNPCSRLVFAGT-- 294 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~------------~~--------------------------------v~~~~~~~~~~~l~~~~-- 294 (430)
..+|+.+..+..... .+ -..++++|+...+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 999999877654210 00 01346666655555432
Q ss_pred -------------------------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 295 -------------------------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 295 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.+|.|..||+.+++.+.+..... .+..-. ....+.+++.++.||.++
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~-~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGV-LATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCC-EEETTTEEEEECTTSEEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccc-eEeCCCEEEEECCCCcEE
Confidence 25789999999999988776543 222211 223467788899999999
Q ss_pred EEEcCCCceEEEEEeccC
Q 014104 344 VLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 344 vwd~~~~~~~~~~~~~~~ 361 (430)
.||.++|+.+.++.....
T Consensus 511 A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEETTTCCEEEEEECSSC
T ss_pred EEECCCCCEEEEecCCCC
Confidence 999999999999886443
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=2.5e-07 Score=78.91 Aligned_cols=205 Identities=5% Similarity=-0.046 Sum_probs=138.4
Q ss_pred CeeEEeeecCCc--eeEEEEecCCCEEEEEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEE-EecCCeE
Q 014104 142 YKCVEEYSLPNA--ASLVDFDFDESKIVGLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV-GCEDGTA 215 (430)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i 215 (430)
.+.+.++..... ..-+.+++++..++++. ++.|.++|+.+++.+.....+.......+...+..++. .-.++.+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 456777776543 35688998864333543 57999999999885433221221222344555666544 4457899
Q ss_pred EEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEEE
Q 014104 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLVF 291 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~ 291 (430)
.++|..+.+.+..+......-..++. +++.++.+..++.|.++|..+.+.+..+.-... ..+..+.|. +|...+
T Consensus 89 ~viD~~t~~v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp EEEETTTTEEEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCCCcEEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence 99999999999888633122234554 344444555688999999999998888774211 136788888 675555
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCC-------------CceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCC
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISP-------------NVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~ 349 (430)
....++.|.+.|..+++.+..+.... ...+.++ ++|+++ .++++...+.|.+.++..
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa-~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA-WDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE-EETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE-EcCCCCEEEEECCCCCeEEEEEEec
Confidence 55467899999999999888776321 3558898 999986 556666788898888764
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.05 E-value=3.6e-07 Score=77.01 Aligned_cols=147 Identities=12% Similarity=0.005 Sum_probs=110.4
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCC-CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
+++.+.+|.|+++|+++++.+..+ .... .-..+++..+.+.++...++.+.++|..+.+.+.++... ..-..++
T Consensus 68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt-- 142 (268)
T 3nok_A 68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC-- 142 (268)
T ss_dssp EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--
T ss_pred EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC--CceeEEe--
Confidence 567777889999999999988777 3222 123466666677777778999999999999999999852 2223343
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 285 PCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 285 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++++.|+.+..++.|.++|..+.+.+.++.... ..++.+. +. +|+..+..-.++.|.+.|..+|+.+..+...
T Consensus 143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe-~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE-CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE-Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 578888887778999999999998887765422 2456677 54 6765555556889999999999999999863
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=4.6e-06 Score=84.11 Aligned_cols=305 Identities=10% Similarity=0.047 Sum_probs=181.6
Q ss_pred eeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCC-
Q 014104 115 VDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE- 190 (430)
Q Consensus 115 v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~- 190 (430)
|.++.. +++.+..|..++.+..||..+++....... ...+..+....++...+++.++.+..||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCC
Confidence 777776 466666677766688999877655432221 2345556667777777787777799999887653221111
Q ss_pred -----CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEeec-------CCCCeEEEEecCCCEEEEEeCCCeEE
Q 014104 191 -----GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSEDQLIISGSSLGSIA 257 (430)
Q Consensus 191 -----~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~dg~i~ 257 (430)
-....+.++..+.. .+..|+.+ -|.+||..+++....... ....|.++...++..+..|+.++-|.
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~ 333 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLN 333 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEE
T ss_pred CCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeE
Confidence 01123455555533 37778776 588999877764433211 23578999888776788888888899
Q ss_pred EEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEEE
Q 014104 258 ISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYSL 323 (430)
Q Consensus 258 vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~l 323 (430)
.+|..++... .+.. -....|.++..+++|+ |..|+.++-|..||..+++...-.. .....|.++
T Consensus 334 ~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 334 YYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp EECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred EeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 9997655432 2221 0234699999988887 4556777669999988765432211 123568888
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-----ccCcceeeeccCCceEEEeeccc---ccC-CcccccCC--
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-----DIGSASSSSNKVSGVIERNEGRR---LSA-GCCIDRIP-- 392 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~s~d~~v~~~~~~~---~~~-~~~~~~~~-- 392 (430)
. ..+++..|..|+.++-|..||..+++.. .+.. ....+..+....+|.+.+.+... +.. ...+....
T Consensus 412 ~-~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~ 489 (795)
T 4a2l_A 412 Y-VDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKE 489 (795)
T ss_dssp E-EETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBC
T ss_pred E-EcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEcccc
Confidence 7 7788874666777677999998876543 2221 12233444444555554432211 111 11111111
Q ss_pred ----CCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 393 ----KTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 393 ----~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.-....|.++..| |+..+ |+.+ -|..|+..++
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKRLWI-GGEE-GLSVFKQEGL 527 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCCEEE-EESS-CEEEEEEETT
T ss_pred ccccccCCceEEEEEECCCCCEEE-EeCC-ceEEEeCCCC
Confidence 1123578888885 44444 4444 4777776543
No 251
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=1.6e-07 Score=85.30 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=124.7
Q ss_pred cCCCEEE--EEeCCeEEEEEcCCCc--c-cccCC--------CC-ceeeeeEEEEcCCceEEEecC------CeEEEEEC
Q 014104 161 FDESKIV--GLIGTRICIWRRNGLR--S-VFPSR--------EG-TFMKGLCMRYFDPEAVVGCED------GTARVFDM 220 (430)
Q Consensus 161 ~~~~~l~--~~~~~~i~vwd~~~~~--~-~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~ 220 (430)
.++++|+ +..++.|.++|+.+.. . +.... .+ .....+.+.+++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7788887 5557899999987541 1 11111 01 011112333444 44554444 78999999
Q ss_pred CCCeeeEEeecCCC---CeEEEEecCC-CEEEEEe-------------------CCCeEEEEeCCCCceeEEEecCCC-C
Q 014104 221 YSRKCSQIIRMHCA---PVTSLSLSED-QLIISGS-------------------SLGSIAISGLSSDQRVATLRSTDC-T 276 (430)
Q Consensus 221 ~~~~~~~~~~~~~~---~i~~~~~~~~-~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~-~ 276 (430)
++++.+..+..... .-..+.|+|+ +.+++.. .+.+|.+||+.+++.+.++..... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999988863222 2345778876 6777663 368999999999988888875211 2
Q ss_pred CeEEEEE--ecCCCEEEEEeC------CCeEEEEeCCCCce--eeee--ec----------------CCCceEEEEEeeC
Q 014104 277 GIKTLCY--NPCSRLVFAGTT------AGYASCWDLRTMKS--LWET--RI----------------SPNVVYSLQHLQN 328 (430)
Q Consensus 277 ~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~--~~~~--~~----------------~~~~v~~l~~~s~ 328 (430)
....+.| +|+++++++++. +++|.+|....++. ...+ .. -......+. +|+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~-lS~ 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID-ISL 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE-ECT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE-ECC
Confidence 4556666 999999887774 56787765543321 1111 00 013466777 999
Q ss_pred CCCeEEEEc-CCCeEEEEEcCC---CceEEEEEe
Q 014104 329 DTSTLVVGG-IDGVLRVLDQNT---GEVLSRCVM 358 (430)
Q Consensus 329 ~~~~l~s~~-~dg~i~vwd~~~---~~~~~~~~~ 358 (430)
||++|+++. ..+.|.+||+.. .+.+..+..
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 999997776 468999999863 345555544
No 252
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=3.9e-07 Score=82.84 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=135.6
Q ss_pred eEEEEeCCCeEEEEecCCC----eeEEeee--------cCCceeEEEEecCCCEEE-EEeC------CeEEEEEcCCCcc
Q 014104 124 LILTGVGDKVMRLWSLEGY----KCVEEYS--------LPNAASLVDFDFDESKIV-GLIG------TRICIWRRNGLRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~----~~~~~~~--------~~~~~~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~~ 184 (430)
++++|..++.|.|+|+.+. +..++++ +......+.+.|++ .++ +..+ +.+.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 6667778899999999765 6667763 11133447888999 555 3333 6899999998875
Q ss_pred cccCCC--C--ceeeeeEEEEcCCceEEEe-------------------cCCeEEEEECCCCeeeEEeecC-C-CCeEEE
Q 014104 185 VFPSRE--G--TFMKGLCMRYFDPEAVVGC-------------------EDGTARVFDMYSRKCSQIIRMH-C-APVTSL 239 (430)
Q Consensus 185 ~~~~~~--~--~~~~~~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~-~-~~i~~~ 239 (430)
+-.... + .....+.+.+.++.+++.. .+.+|.+||+.+++.+.++..- . .....+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 432221 1 1112244455666566663 3689999999999888887642 1 234455
Q ss_pred Ee--cCC-CEEEEEe------CCCeEEEEeCCCCce--eEEE--ecC-----C----------CCCeEEEEEecCCCEEE
Q 014104 240 SL--SED-QLIISGS------SLGSIAISGLSSDQR--VATL--RST-----D----------CTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 240 ~~--~~~-~~l~~~~------~dg~i~vwd~~~~~~--~~~~--~~~-----~----------~~~v~~~~~~~~~~~l~ 291 (430)
.| +|+ .++++++ .+++|.+|....++. .+.+ ... . ......+.++|||++|+
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY 336 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY 336 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence 55 776 5555554 567887766554432 1111 110 0 23578899999999998
Q ss_pred EEeC-CCeEEEEeCCC---CceeeeeecCC--------------CceEEEEEeeCCCCeEEEEc
Q 014104 292 AGTT-AGYASCWDLRT---MKSLWETRISP--------------NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 292 ~~~~-dg~i~i~d~~~---~~~~~~~~~~~--------------~~v~~l~~~s~~~~~l~s~~ 337 (430)
++.. .+.|.+||+.. .+.+..+.... +.-..+. ++|||++|+++.
T Consensus 337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~-lSpDGk~LyVaN 399 (462)
T 2ece_A 337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE-ISRDGRRVYVTN 399 (462)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE-ECTTSSEEEEEC
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE-EcCCCCEEEEEc
Confidence 7765 67899999863 34444443320 1246777 999999999887
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=6.6e-06 Score=82.97 Aligned_cols=236 Identities=11% Similarity=0.053 Sum_probs=152.7
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--------CCceeEEEEecCCCEEEEEeCCeEEEEEcCCC
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--------PNAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 182 (430)
...|.++.. +++.+..|+.++-+.+||..+++....... ...+..+....++...+++.+ .+.+||..++
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD 292 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence 345777776 566666677665689999887655432221 133555677778887777765 7899998876
Q ss_pred cccccCC------CCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeec-------CCCCeEEEEecCCCEEE
Q 014104 183 RSVFPSR------EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSEDQLII 248 (430)
Q Consensus 183 ~~~~~~~------~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~ 248 (430)
....... .-....+.++..+... +..|+.++-|..++..++... .+.. ....|.++...++..+.
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lW 371 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLW 371 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEE
Confidence 5322111 0111234555555433 888998888999987655432 2211 23468999887666677
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee----cCC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR----ISP 317 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~ 317 (430)
.|+.++-|..||..+++...-... -....|.++..+++|+.|..|+.++-|..||..+++...-.. ...
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 888888899999887654332211 023579999999888856777777779999998765432211 223
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
..|.++. ..++|.+.+.. .+ -|.+||..+++.
T Consensus 452 ~~v~~i~-~d~~g~lwigt-~~-Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 452 ENVYAIL-PDGEGNLWLGT-LS-ALVRFNPEQRSF 483 (795)
T ss_dssp SCEEEEE-ECSSSCEEEEE-SS-CEEEEETTTTEE
T ss_pred CeeEEEE-ECCCCCEEEEe-cC-ceeEEeCCCCeE
Confidence 5788887 77777755544 44 488899876643
No 254
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=96.96 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+.++..||.|++++||+||+|+||+++++|||.|+.+++|+.|||.++.+..
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 4578899999999999999999999999999999999999999999999753
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=9.7e-07 Score=74.41 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=127.0
Q ss_pred eeEEeeecCCce--eEEEEecCCCEEE--EEeCC--eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeE
Q 014104 143 KCVEEYSLPNAA--SLVDFDFDESKIV--GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTA 215 (430)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~~~~~~~l~--~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i 215 (430)
+.+.++.+.... .-+.|+ ++ .|+ ++.+| .|+++|+++++.+.............+...+..+.... .++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 566777665444 346676 44 555 44444 89999999998543332222222344555666655544 58899
Q ss_pred EEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEEE
Q 014104 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLVF 291 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~ 291 (430)
.++|..+.+.+.++.... .=..++. +++.++.+..++.|.++|..+.+.+.++..... ..+..+.+. +|+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 999999999999887432 2234554 344555555578899999999999888764211 234567776 676555
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecC------------CCceEEEEEeeCCCCeEEEEcC
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRIS------------PNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
..-.+..|.+.|.++++.+..+... .+..++++ ++|+++.|+..+.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA-~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIA-WDKEHHRLFVTGK 244 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEE-EETTTTEEEEEET
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEE-EcCCCCEEEEECC
Confidence 5556889999999999988776542 13568898 9998887766653
No 256
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=8.8e-08 Score=86.41 Aligned_cols=221 Identities=9% Similarity=-0.081 Sum_probs=135.5
Q ss_pred ccccceeEEEec-CCeEEEEeC------CCeEEEEecCCCeeEEeeecCC-------ceeEEEEecCCCEEE-EE----e
Q 014104 110 AHSVGVDQCRMK-RGLILTGVG------DKVMRLWSLEGYKCVEEYSLPN-------AASLVDFDFDESKIV-GL----I 170 (430)
Q Consensus 110 ~h~~~v~~~~~~-~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-~~----~ 170 (430)
+|-..+..++++ ++.|+.... ++.|.+||+.+++.+..+..+. ....+++++++..++ +. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 355678899994 565544432 5799999999999887776531 235688888765554 33 5
Q ss_pred CCeEEEEEcCCCcccccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE
Q 014104 171 GTRICIWRRNGLRSVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
++.|.+||+.+++..... +.........+...+..+.+.+.+|.+..|. ..+..++++|+ +.+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 688999999877532211 1111000012222333355555666654442 23578999976 577
Q ss_pred EEEeCCC-eEEEEeCC---CCc-----eeE--EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-
Q 014104 248 ISGSSLG-SIAISGLS---SDQ-----RVA--TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI- 315 (430)
Q Consensus 248 ~~~~~dg-~i~vwd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 315 (430)
+.+..++ .+..++.. .+. ... ...+ +......++++++|+++++...++.|.+||..+++.......
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 7776555 55555532 111 000 1112 233567799999999999988899999999855654322221
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+.....+++ +.+++.++++.+..+.+.+|+
T Consensus 289 ~~~~p~~va-~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 KLSWTDSFN-FGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGSCEEEEE-ECTTSCEEEEECCGGGSGGGB
T ss_pred ceecCCeeE-ECCCCcEEEEeCccccccccc
Confidence 234578888 889988888877655554443
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=1.1e-05 Score=69.66 Aligned_cols=231 Identities=8% Similarity=-0.031 Sum_probs=138.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeE-----EeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcccc-cCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCV-----EEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSVF-PSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~-~~~~~~~~ 194 (430)
+|+.+.. +.|+.++++..... ..+..+ .....++++++++.|+ +. ..+.|.++++++..... ........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 3444443 47888888764321 112211 2445688998877776 43 36789999998764321 11111223
Q ss_pred eeeEEEEcCCceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeC---CCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSS---LGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~---dg~i~vwd~~~~~~~~~ 269 (430)
..+++.+.+..++. -...+.|.++++..................++++| +..++.+.. .+.|..+++.. .....
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 34455544555544 44567899999864332222222224678999997 465555543 46888888763 33333
Q ss_pred EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+..........++++|++..|+.+ ...+.|.++|.........+.. ......++ .. ++..+++....+.|..+|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~-~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVT-SY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEE-EE-TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEE-Ee-CCEEEEEECCCCeEEEEeCC
Confidence 332133468899999987766554 4567899999986443333332 23345666 43 34444555567899999999
Q ss_pred CCceEEEEEec
Q 014104 349 TGEVLSRCVMD 359 (430)
Q Consensus 349 ~~~~~~~~~~~ 359 (430)
+++.+.++...
T Consensus 238 ~g~~~~~i~~g 248 (267)
T 1npe_A 238 ISKEMDTFHPH 248 (267)
T ss_dssp TTEEEEEECCS
T ss_pred CCCceEEEccc
Confidence 99998888643
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.91 E-value=6e-08 Score=91.31 Aligned_cols=227 Identities=9% Similarity=0.024 Sum_probs=148.4
Q ss_pred CC-eEE-EEeCCCeEEEEecCCCeeEEeeecC--CceeEEEE-e-cCCCEEEEEe-------------------CCeEEE
Q 014104 122 RG-LIL-TGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDF-D-FDESKIVGLI-------------------GTRICI 176 (430)
Q Consensus 122 ~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~l~~~~-------------------~~~i~v 176 (430)
|| +++ +...+..|.+.|+.+.++.+.+..+ .....+++ + |++++++++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 44 444 4445678999999999988865543 44556776 4 8999988442 357899
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC--------------------------------------eEEEE
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--------------------------------------TARVF 218 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------------------------~i~vw 218 (430)
+|.++.+......-+.....+.+.+++..+++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999877544433211223355555566555555332 47778
Q ss_pred ECCC--Cee-eEEeecCCCCeEEEEecCC-CE-EEEEeCCCeEEEEeCCCCc------------eeEEEecCCCCCeEEE
Q 014104 219 DMYS--RKC-SQIIRMHCAPVTSLSLSED-QL-IISGSSLGSIAISGLSSDQ------------RVATLRSTDCTGIKTL 281 (430)
Q Consensus 219 d~~~--~~~-~~~~~~~~~~i~~~~~~~~-~~-l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~v~~~ 281 (430)
|..+ ++. +..+.. .....++.++|+ ++ ++++..+.+|.++|+.+.+ ....+. .......+
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~ 336 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHT 336 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceE
Confidence 8776 444 445543 234568899986 54 4445578899999998653 333443 44578999
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCC----------CceeeeeecCCCce-----EEEEEeeCCCCeEEEEcC---CCe--
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRT----------MKSLWETRISPNVV-----YSLQHLQNDTSTLVVGGI---DGV-- 341 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v-----~~l~~~s~~~~~l~s~~~---dg~-- 341 (430)
+|+|+|....+..-|+.|.+||+.. .+.+..+..|-.+- .++. .+|||++|+++.. |+.
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t-~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGET-LDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTS-TTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceE-eCCCCCEEEEcCCCCcccccc
Confidence 9999994444566799999999987 45566666654321 2223 6899999998863 432
Q ss_pred --------EEEEEcCCCce
Q 014104 342 --------LRVLDQNTGEV 352 (430)
Q Consensus 342 --------i~vwd~~~~~~ 352 (430)
-.++|+..+++
T Consensus 416 ~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCSSCCEEEEEEECSSSSC
T ss_pred CCCCCCCcceEEEcCCCcE
Confidence 28899976553
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.88 E-value=4.3e-06 Score=69.85 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=125.5
Q ss_pred CeeEEeeecCCceeE--EEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCe
Q 014104 142 YKCVEEYSLPNAASL--VDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGT 214 (430)
Q Consensus 142 ~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~ 214 (430)
.+.+.++.+...... +.|+ +..|. ++.. ..|+.+|+++++......-........+...+..+. ..-.++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence 356777766554443 5555 45666 4433 489999999998543332222222234455566644 4456899
Q ss_pred EEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEE
Q 014104 215 ARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLV 290 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l 290 (430)
+.++|..+.+.+.++.... .=..++.. +..++.+..++.|.++|..+.+.+.++..... ..+..+.+. +|+..
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 9999999999999987433 23456553 44444455688999999999999888764211 245667765 66655
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecC-------------CCceEEEEEeeCCCCeEEEEc
Q 014104 291 FAGTTAGYASCWDLRTMKSLWETRIS-------------PNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+..-.+..|.+.|.++++.+..+... .+..++++ ++|+++.|+..+
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA-~d~~~~~lfVTG 222 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA-FDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE-EETTTTEEEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE-EcCCCCEEEEEC
Confidence 55446778999999999988776522 13568898 999877665554
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=8.4e-06 Score=82.06 Aligned_cols=234 Identities=12% Similarity=0.028 Sum_probs=146.7
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee---------------cCCceeEEEEecCCCEEEEEeCCeEEE
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS---------------LPNAASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
..|.++.. ++|.|..|+..+-|.++|..+++...... ....+..+....+|..-+++.++.|..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~ 337 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF 337 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence 45777777 56677778876678889987765432211 123455677777888777888899999
Q ss_pred EEcCCCcccccCC--------CCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecCC
Q 014104 177 WRRNGLRSVFPSR--------EGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSED 244 (430)
Q Consensus 177 wd~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~~ 244 (430)
++..+........ .-....+.++..+. ..+..|+.++-+..+|..+++..... ......|.++...++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 338 ISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp ECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT
T ss_pred eCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC
Confidence 9987654221111 11112345666554 34888887777999998655432211 123457888888766
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-----C
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-----P 317 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~ 317 (430)
..+..|+.++-+..+|..+++.. .+.. .....|.++...++|.+ ..|+.. -|..||..+++........ .
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l-wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~ 494 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI-WIGTHA-GVFVIDLASKKVIHHYDTSNSQLLE 494 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE-EEEETT-EEEEEESSSSSCCEEECTTTSSCSC
T ss_pred CCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE-EEEECC-ceEEEeCCCCeEEecccCccccccc
Confidence 56777887788999998776543 3321 13457999998887764 445554 5999998876543322111 3
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
..|.++. ..++|.+.+.....| |..||..+++
T Consensus 495 ~~i~~i~-~d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 495 NFVRSIA-QDSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp SCEEEEE-ECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred ceeEEEE-EcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 5788887 888887555443344 7778877553
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=9.9e-06 Score=69.98 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=108.0
Q ss_pred EEEEEeCCeEEEEEcCCCcccc-c-----CCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeE
Q 014104 165 KIVGLIGTRICIWRRNGLRSVF-P-----SREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVT 237 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 237 (430)
+|+-+..+.|+.+++++..... . .........+++.+.+..++ +-..++.|..+++........+........
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~ 82 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence 4443334578888887654210 0 00011122344444444554 444578999999876544333332234678
Q ss_pred EEEecC-CCE-EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeee
Q 014104 238 SLSLSE-DQL-IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 238 ~~~~~~-~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 312 (430)
.+++++ ++. +++-...+.|.++|+.... ...+..........++++|++..|+.+.. .+.|..+++.. +....
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 999986 444 4444567899999986433 23332212246789999997666655543 36888888763 32222
Q ss_pred ee-cCCCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCC
Q 014104 313 TR-ISPNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 313 ~~-~~~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~ 349 (430)
+. ........++ +++++..| ++-...+.|.++|...
T Consensus 161 ~~~~~~~~P~gia-~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 161 LAQDNLGLPNGLT-FDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EECTTCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTE
T ss_pred EEECCCCCCcEEE-EcCCCCEEEEEECCCCEEEEEecCC
Confidence 22 2234567888 99987666 4555668999999874
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=3.9e-05 Score=77.21 Aligned_cols=308 Identities=9% Similarity=0.021 Sum_probs=172.7
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee--------cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS--------LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
..|.++.. +++.|..|..++-+..||..+++...... ....+..+....++...+++.+ .+.+||..+++
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET 241 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence 45777776 46777778777678899988765432211 0133555666677777777765 79999987765
Q ss_pred ccccCCC------CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--------------cCCCCeEEEEec
Q 014104 184 SVFPSRE------GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--------------MHCAPVTSLSLS 242 (430)
Q Consensus 184 ~~~~~~~------~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--------------~~~~~i~~~~~~ 242 (430)
....... -....+.++..+.. .+..|+..+-|.++|..+++...... .....|.++...
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD 321 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe
Confidence 3211111 11123455555443 38888876678889987665322111 123578898887
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEe--------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-
Q 014104 243 EDQLIISGSSLGSIAISGLSSDQRVATLR--------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET- 313 (430)
Q Consensus 243 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 313 (430)
++..+..|+.++-|..++..++....... .-....|.++...++|.+ ..|+.++-|..||..+++...-.
T Consensus 322 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~ 400 (781)
T 3v9f_A 322 SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKE 400 (781)
T ss_dssp SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC--
T ss_pred CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccC
Confidence 66678888888889999987654322110 102246999999888774 45665555999998765432211
Q ss_pred --ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe---ccCcceeeeccCCceEEEeeccc---ccC-
Q 014104 314 --RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM---DIGSASSSSNKVSGVIERNEGRR---LSA- 384 (430)
Q Consensus 314 --~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~s~d~~v~~~~~~~---~~~- 384 (430)
......|.++. ..++|.+. .|+.++-|..+|..+++.. .+.. ....+..+.-..+|.+.+.+... +..
T Consensus 401 ~~~~~~~~v~~i~-~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSL-KDSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEE-ECTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESS
T ss_pred CCCCCCcceEEEE-ECCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCC
Confidence 12336788887 77677644 4666667899998766432 2221 12233344444555554332211 111
Q ss_pred CcccccCCC-----CCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecC
Q 014104 385 GCCIDRIPK-----TIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 385 ~~~~~~~~~-----~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...+..... .....|.++..| ...|..|+.++-|..|+.++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 111111111 113578888885 33344445433355566543
No 263
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.79 E-value=4.3e-09 Score=90.21 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhH-HHHhhhHHHHHhcCCchhHHHHHHHhcCCCC----CCCCchHHHHHH
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLV-RCSAVCKSWNAIINRCKLLQLLYCKLHGFSN----TSGSSMRLHLEE 88 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~----~~~~~~~~~~~~ 88 (430)
...+..||+|++.+||++|++++|. +|++|||+|+.+++++.+|+.+|.+.+..+. +...+|+..+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~ 120 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFL 120 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhheh
Confidence 4678899999999999999999999 9999999999999999999999998854321 144456655443
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=1.1e-05 Score=71.89 Aligned_cols=235 Identities=10% Similarity=-0.009 Sum_probs=135.4
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-ccCCC---------C--------ceeeeeEEEEc--CCceEEEecC
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSRE---------G--------TFMKGLCMRYF--DPEAVVGCED 212 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~---------~--------~~~~~~~~~~~--~~~l~~~~~d 212 (430)
...++++++++.++ +..++.|..|+..++... +.... + .......+... +..|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 44466677766344 555677777776654321 11000 0 00112334443 3457777666
Q ss_pred CeEEEEECCCCeeeEEeec-----CCCCeEEEEecC-CCEEEEEeC------------------CCeEEEEeCCCCceeE
Q 014104 213 GTARVFDMYSRKCSQIIRM-----HCAPVTSLSLSE-DQLIISGSS------------------LGSIAISGLSSDQRVA 268 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~l~~~~~------------------dg~i~vwd~~~~~~~~ 268 (430)
+.|..+|..+++. ..+.. .......+++.+ +..++.+.. ++.|..+|..+++...
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6688889766543 22211 123467899988 643444332 3679999987776433
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcC-------
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGI------- 338 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------- 338 (430)
.... ......++++|+|+.|+.+ ...+.|.+|++.... ....+....+ ...++ +.++|.+.++...
T Consensus 180 ~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~-~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 180 LLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK-RNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE-ECTTSCEEEEEEEETTSSTT
T ss_pred eccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE-ECCCCCEEEEecCccccccc
Confidence 2221 2245679999999866655 556889999987421 1111111223 67787 8999986666544
Q ss_pred ---CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeC
Q 014104 339 ---DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHN 414 (430)
Q Consensus 339 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~ 414 (430)
.+.|..+|.. ++.+..+....+. .-..++++.+ +++.+++...
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~--------------------------------~~~~~~~~~~~~g~L~v~~~~ 302 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPF--------------------------------AGEHFEQIQEHDGLLYIGTLF 302 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTT--------------------------------TTSCCCEEEEETTEEEEECSS
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCC--------------------------------ccccceEEEEeCCEEEEeecC
Confidence 4678888864 7777666543220 0123555555 4666777778
Q ss_pred CCeEEEEEecCC
Q 014104 415 SKYIRLWKFNYS 426 (430)
Q Consensus 415 Dg~v~vw~~~~~ 426 (430)
.+.|.+++++..
T Consensus 303 ~~~i~~~~~~~~ 314 (322)
T 2fp8_A 303 HGSVGILVYDKK 314 (322)
T ss_dssp CSEEEEEEC---
T ss_pred CCceEEEecccc
Confidence 889999988643
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.63 E-value=0.00019 Score=65.56 Aligned_cols=240 Identities=10% Similarity=-0.032 Sum_probs=147.7
Q ss_pred eeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc-cccCCC
Q 014104 115 VDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS-VFPSRE 190 (430)
Q Consensus 115 v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~-~~~~~~ 190 (430)
-.|.+.. ..+|+.+.. ..|+..++.+.+.............++|++.+..|+ +. ..+.|..+++++... .+....
T Consensus 79 ~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 79 RSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp SCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred CeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3455443 335554443 578888988766655555556677799998777766 43 467899999887652 221111
Q ss_pred CceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCC-CeEEEEeCCCCce
Q 014104 191 GTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSL-GSIAISGLSSDQR 266 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~d-g~i~vwd~~~~~~ 266 (430)
......+++.+.+..| ++-...+.|.+.++........+.........++++|. ..++ +-... +.|..+++.. ..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~ 236 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SG 236 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CS
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CC
Confidence 1122345555445554 44455678888887644333333333356789999864 4444 43344 7899998764 33
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...+..........++++|++..|+.+ ...+.|..+|+........+........+++ + .++...++-...+.|..+
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEE-E-ECCEEEEeeCCCCeEEEE
Confidence 333332133467899999877666654 4567899999874332222332334567777 5 345666677778899999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
|..+|+.+..+..
T Consensus 315 ~~~~G~~~~~i~~ 327 (386)
T 3v65_B 315 NKFTGKNQEIIRN 327 (386)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCcceEEEcc
Confidence 9777887777764
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=0.00023 Score=63.99 Aligned_cols=242 Identities=10% Similarity=-0.029 Sum_probs=148.2
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCccc-ccC
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSV-FPS 188 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~-~~~ 188 (430)
+...|.+. ++.+|+.+. ...|+..++.+......+........++|++.+..|+ +. ..+.|..+++++.... +..
T Consensus 34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 44556555 334555443 3458888887766555555556677789998777776 43 4678999998876522 111
Q ss_pred CCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEE-EEEeCC-CeEEEEeCCCC
Q 014104 189 REGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLI-ISGSSL-GSIAISGLSSD 264 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~~~~~d-g~i~vwd~~~~ 264 (430)
........+++.+.+..| ++-...+.|.+.++........+.........++++| +..+ ++-... +.|...++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG- 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG- 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-
Confidence 111122335555445554 4445567899999864433333333345678999997 4444 444444 7899988763
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.....+..........++++|++..|+.+ ...+.|..+|+........+........+++ + .++...++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE-E-ECCEEEEecCCCCeEE
Confidence 33333322133467899999877766654 4567899999874332222323334567777 5 3456666666788999
Q ss_pred EEEcCCCceEEEEEe
Q 014104 344 VLDQNTGEVLSRCVM 358 (430)
Q Consensus 344 vwd~~~~~~~~~~~~ 358 (430)
.+|..+|+.+..+..
T Consensus 270 ~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 270 SANKFTGKNQEIIRN 284 (349)
T ss_dssp EEETTTCCSCEEEEC
T ss_pred EEEccCCCccEEecc
Confidence 999777877777654
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=9.6e-05 Score=65.16 Aligned_cols=228 Identities=10% Similarity=0.051 Sum_probs=133.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeC---CeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIG---TRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~i~vwd 178 (430)
.+..+... .....+++ +++ ++++-..++.|..||..+ +....+........+++.++++.+++... ..|..++
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 44555433 45677888 566 444444788999999876 44444555556677999999997665532 2477777
Q ss_pred cCCCccc--ccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCee-eEEee---------cCCCCeEEEEecC-C
Q 014104 179 RNGLRSV--FPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKC-SQIIR---------MHCAPVTSLSLSE-D 244 (430)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~---------~~~~~i~~~~~~~-~ 244 (430)
..+++.. ............+. ..+..++++ ..++.|..+|..+++. +.... ..-.....+ ++ +
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CCCCeEEEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 7666532 11111222222222 123334444 4588999999876531 21111 111234455 43 3
Q ss_pred C-EEEEEeCCCeEEEEeCCC-Cce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeecCCC
Q 014104 245 Q-LIISGSSLGSIAISGLSS-DQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRISPN 318 (430)
Q Consensus 245 ~-~l~~~~~dg~i~vwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~ 318 (430)
+ ++++-+..+.|..+|+.. ++. ...+.. ......++++++|++.++....+.|.++|.. ++.. ..+.....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 4 445556678999999874 322 122221 1346778999999877776667889999976 5542 23333335
Q ss_pred ceEEEEEee---CCCCeEEEEcCCC
Q 014104 319 VVYSLQHLQ---NDTSTLVVGGIDG 340 (430)
Q Consensus 319 ~v~~l~~~s---~~~~~l~s~~~dg 340 (430)
...+++ |. |+++.|+..+..+
T Consensus 256 ~p~~~a-~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 256 GSTAVA-FGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TEEEEE-ECCSTTTTTEEEEEECTT
T ss_pred CceEEE-EecccCCCCEEEEECCCC
Confidence 678888 87 7877776665443
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=9.1e-05 Score=65.82 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=138.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec---------------------CCceeEEEEec-CC
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---------------------PNAASLVDFDF-DE 163 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~ 163 (430)
+.+.-....++++ +++ +++++..++.|..||..+++.. .+.. ......+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 4443344567777 455 5888888999999998775433 2221 02345688887 66
Q ss_pred CEEEEEeCCeEEEEEcCCCcc-cccC-CCC---ceeeeeEEEE-cCCceEEEec------------------CCeEEEEE
Q 014104 164 SKIVGLIGTRICIWRRNGLRS-VFPS-REG---TFMKGLCMRY-FDPEAVVGCE------------------DGTARVFD 219 (430)
Q Consensus 164 ~~l~~~~~~~i~vwd~~~~~~-~~~~-~~~---~~~~~~~~~~-~~~~l~~~~~------------------dg~i~vwd 219 (430)
+.+++...+.+..+|.+++.. .+.. ..+ .....+.+.. .+ .++.+.. ++.|..+|
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEe
Confidence 656676667788888876542 1111 111 1112233333 23 3444432 36788888
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
..+++....... ......++++++ +.++.+ +..+.|.++++.... ....+.. ..+ ...++++++|++.++...
T Consensus 172 ~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 172 PSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence 876654332221 233457899976 545444 567899999987421 1222222 223 788999999987666544
Q ss_pred ----------CCeEEEEeCCCCceeeeeecCC----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 296 ----------AGYASCWDLRTMKSLWETRISP----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 296 ----------dg~i~i~d~~~~~~~~~~~~~~----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.|..+|.. ++.+..+.... ..+.+++ + .++.+.++....+.|..+++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~-~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQ-E-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEE-E-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEE-E-eCCEEEEeecCCCceEEEecc
Confidence 4668888875 77666665432 3456665 4 356655666677889999876
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.52 E-value=0.00048 Score=61.87 Aligned_cols=183 Identities=7% Similarity=-0.051 Sum_probs=106.9
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
.|+.+....|+..++++...............+.+.+....|+ +-...+.|..+++........+.........+++.+
T Consensus 46 ~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~ 125 (349)
T 3v64_C 46 VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW 125 (349)
T ss_dssp EEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred eeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEec
Confidence 3444455567777776654322222222223344444444444 444678898899876544333332233456778774
Q ss_pred -C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE-eCC-CeEEEEeCCCCceeeeeecCCCc
Q 014104 244 -D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTA-GYASCWDLRTMKSLWETRISPNV 319 (430)
Q Consensus 244 -~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~i~d~~~~~~~~~~~~~~~~ 319 (430)
+ .++++-...+.|.+.++..... ..+..........++++|.+..|+.. ... +.|..+++............-..
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~ 204 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence 3 4555656678999999874433 33332234568999999966655544 344 78999888743222222222345
Q ss_pred eEEEEEeeCCCCeEEEE-cCCCeEEEEEcCC
Q 014104 320 VYSLQHLQNDTSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~ 349 (430)
...++ ++|++..|+.+ +..+.|..+|+..
T Consensus 205 PnGla-~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 205 PNGLT-IDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEE-EETTTTEEEEEETTTTEEEEEETTS
T ss_pred cceEE-EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 67888 99876656544 4667899999863
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.49 E-value=0.00053 Score=60.63 Aligned_cols=187 Identities=8% Similarity=-0.002 Sum_probs=106.3
Q ss_pred EEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCC----CeeeEEeecCCCCeEEEE
Q 014104 166 IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~ 240 (430)
|+-+....|+..|+++...............+.+.+.+..+ ++-..++.|..+++.. ......+.........++
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred EEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 44455566777777765432211112222233343334444 4445568899998865 222222322223456788
Q ss_pred ecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEeCCCCceeeee-ec
Q 014104 241 LSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-A-GYASCWDLRTMKSLWET-RI 315 (430)
Q Consensus 241 ~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-~~ 315 (430)
+.+ + ++.++-...+.|.+.|+........+.. .......++++|.+..|+.... . +.|..+++. +.....+ ..
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~ 161 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE 161 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC
Confidence 874 4 4555556788999999874433322332 3457899999997766655443 2 688888876 3333332 22
Q ss_pred CCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-.....++ +++++..|+.+ +..+.|..+|+. |...+.+
T Consensus 162 ~~~~P~gla-~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 162 NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCeEEEEecC-CCceEEE
Confidence 235677888 99877666554 466789999987 4333333
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.49 E-value=0.00043 Score=63.11 Aligned_cols=184 Identities=7% Similarity=-0.035 Sum_probs=109.1
Q ss_pred CEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 164 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
..|+.+....|+.+++.+...............+.+.+....|+ +-...+.|..+++........+.........+++.
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence 34555556778888887655332222222233344444444444 44567889999987654433333222344567777
Q ss_pred C-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEeCCCCceeeeeecCCC
Q 014104 243 E-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TA-GYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 243 ~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~ 318 (430)
+ + .++++-...+.|.+.++........+.. .......++++|.+..|+... .. +.|..+++..............
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 4 3 4555556678899999874433333332 335789999999777666544 34 6788888874332222222334
Q ss_pred ceEEEEEeeCCCCeEEE-EcCCCeEEEEEcCC
Q 014104 319 VVYSLQHLQNDTSTLVV-GGIDGVLRVLDQNT 349 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s-~~~dg~i~vwd~~~ 349 (430)
....++ ++|++..|+. -+..+.|..+|+..
T Consensus 247 ~PnGla-vd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 247 WPNGLT-IDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp CEEEEE-EEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CeeeEE-EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 567888 9876665544 45667899999863
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=1.7e-05 Score=78.02 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=122.0
Q ss_pred CC-eEEEEeCCC-----------eEEEEecCCCeeEE--eeecCC--ceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCc
Q 014104 122 RG-LILTGVGDK-----------VMRLWSLEGYKCVE--EYSLPN--AASLVDFDFDESKIV-GL-IGTRICIWRRNGLR 183 (430)
Q Consensus 122 ~~-~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~ 183 (430)
++ .++.|+.+. .+.+||..+++... ....+. .....++..++..++ ++ .+..+.+||..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 66 666666532 58899988765432 222222 223366778888877 44 45689999998765
Q ss_pred cc--ccCCCCceeeeeEEEE-cCCceEEEe-cC-----CeEEEEECCCCeeeEE-----eecCCCCeEEEEecCCCEEEE
Q 014104 184 SV--FPSREGTFMKGLCMRY-FDPEAVVGC-ED-----GTARVFDMYSRKCSQI-----IRMHCAPVTSLSLSEDQLIIS 249 (430)
Q Consensus 184 ~~--~~~~~~~~~~~~~~~~-~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~~~~~~l~~ 249 (430)
-. ....... ....+... ++..++.|+ .+ ..+.+||..+++-... .......-.++....+..++.
T Consensus 277 W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 277 WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 355 (656)
T ss_dssp EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred eeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence 21 1111111 11122222 555577777 34 5699999987653221 000000000011112334444
Q ss_pred EeCC---------CeEEEEeCCCCceeEEEecCC--------CCCeEEEEEec-CCCEEEEEeCCC-----------eEE
Q 014104 250 GSSL---------GSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNP-CSRLVFAGTTAG-----------YAS 300 (430)
Q Consensus 250 ~~~d---------g~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~dg-----------~i~ 300 (430)
|+.+ ..+..||..+........... ...-.++.|.. ++++++.|+.++ .|.
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 4433 457888988766443332100 11234455543 677788887542 688
Q ss_pred EEeCCCCceeeee--ecCCCce-EEEEEeeCCCCeEEEEcCC-----------CeEEEEEcCCCc
Q 014104 301 CWDLRTMKSLWET--RISPNVV-YSLQHLQNDTSTLVVGGID-----------GVLRVLDQNTGE 351 (430)
Q Consensus 301 i~d~~~~~~~~~~--~~~~~~v-~~l~~~s~~~~~l~s~~~d-----------g~i~vwd~~~~~ 351 (430)
+||..+.+-.... ..+.... .+++ ..|+++.++.|+.+ ..+.+||..+.+
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~-~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSV-VLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEE-ECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeE-ECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 8888776543222 1122222 2333 55799999998854 457888887654
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00082 Score=59.42 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=138.1
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCC----Cc-ccccCCCCceeeeeEEEEcCC
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNG----LR-SVFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~----~~-~~~~~~~~~~~~~~~~~~~~~ 204 (430)
..|+..|+.+.+....+........++++++++.|+ +. ..+.|..+++++ .. .............+++.+.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 468888998877666665556677789998777766 43 358899999886 22 111111111223345544455
Q ss_pred ceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeC-C-CeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSS-L-GSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.|+ +-...+.|.+.|+........+.........++++| +..++.+.. . +.|...++. |.....+....-.....
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNG 168 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceE
Confidence 554 445678999999864433333333345678999986 454444433 3 689888875 44444443213346889
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeee-c--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 281 LCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETR-I--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 281 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++++|++..|+.+. ..+.|..+|+... ....+. . ......+++ +. ++...++-...+.|..+|..+|+.+..+
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~gia-v~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEE-EE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 99998877666554 5678999998743 222222 1 223456777 54 4566666667889999998888877776
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 246 ~~ 247 (316)
T 1ijq_A 246 AE 247 (316)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.40 E-value=0.0012 Score=60.37 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCce
Q 014104 234 APVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKS 309 (430)
Q Consensus 234 ~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 309 (430)
.....+++.+ + ++.++-...+.|.+.++........+.. .......++++|.+.+|+.... .+.|...++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 4567788874 3 4555556778999999875544333332 3446899999997766665542 36798888874332
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.......-.....|+ +++++..|+.+ +..+.|..+|+. |.....+
T Consensus 238 ~~~~~~~l~~P~gla-vd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~ 283 (400)
T 3p5b_L 238 YSLVTENIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 283 (400)
T ss_dssp EEEECSSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCCCEEE
T ss_pred EEEEECCCCceEEEE-EEeCCCEEEEEECCCCEEEEEeCC-CCccEEE
Confidence 222233335678898 99877766655 456789999986 4333333
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.32 E-value=0.0014 Score=57.81 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=134.4
Q ss_pred CCeEEEEecCCCe--eEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 204 (430)
...|+..|+++.. ....+........++|++.+..|+ +. ..+.|..+++++... ......-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 3578888887653 222222223455678888766666 43 467899999887632 11111111122344544444
Q ss_pred ce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.| ++-...+.|.++++........+.........+++.|. ..++.+. ..+.|...++. |.....+....-.....
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 170 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence 44 44455678999998643322223234456789999864 5555444 35789888876 33333332213346789
Q ss_pred EEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 281 LCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 281 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++++|++..|+.+ ...+.|..+|+.................+++ +. .+..+.+-...+.|..+|..+|+....+..
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 9999977666654 4567899999874322222222334566777 54 345556666778999999988887776654
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.0014 Score=57.53 Aligned_cols=205 Identities=8% Similarity=0.016 Sum_probs=117.3
Q ss_pred CCeeEEeeecCCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe--cCC-eEE
Q 014104 141 GYKCVEEYSLPNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC--EDG-TAR 216 (430)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg-~i~ 216 (430)
..+.+..+........++++++++.+++. .++.|..||.++........ ......+++...+. ++++. .++ .|.
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~-~~~p~gia~~~dG~-l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-EGKVSGLAFTSNGD-LVATGWNADSIPVV 98 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-SSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred CceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeC-CCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence 34555666555566678999988866654 57889999887654322222 22223344444444 44444 222 477
Q ss_pred EEECCCCeeeEEeec-CCCCeEEEEecCCCE-EEEEeCCCeEEEEeCCCCce-eEEEec--------CCCCCeEEEEEec
Q 014104 217 VFDMYSRKCSQIIRM-HCAPVTSLSLSEDQL-IISGSSLGSIAISGLSSDQR-VATLRS--------TDCTGIKTLCYNP 285 (430)
Q Consensus 217 vwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~-~~~~~~--------~~~~~v~~~~~~~ 285 (430)
.+|..+++....... .......++..++.. +++-..++.|.++|..+++. +..... ........+ +|
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 778777765433221 122334455445544 44444688999999876532 211110 011234555 88
Q ss_pred CCCEEEEE-eCCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 286 CSRLVFAG-TTAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 286 ~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+++.|+.+ ...+.|..||+.. ++. ...+.. ......++ ++++|++.++....+.|.++|.. |+.
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~-vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFA-FDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEE-EBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeE-ECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 88766654 4567899999874 321 111111 12345566 88999877776677889999975 655
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=7.4e-05 Score=73.48 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=100.9
Q ss_pred cCCceeEEEEec-CCCEEE-EEeCC-----------eEEEEEcCCCccc--ccCC--CCceeeeeEEEEcCCceEEEec-
Q 014104 150 LPNAASLVDFDF-DESKIV-GLIGT-----------RICIWRRNGLRSV--FPSR--EGTFMKGLCMRYFDPEAVVGCE- 211 (430)
Q Consensus 150 ~~~~~~~~~~~~-~~~~l~-~~~~~-----------~i~vwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~~- 211 (430)
.+......++.+ +++.++ ++.+. .+.+||..+++-. .... ........++...+..+++|+.
T Consensus 184 ~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 184 LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 333344567777 676666 54332 5788998876521 1111 1111111233344555777774
Q ss_pred CCeEEEEECCCCeeeEEeecCCCC-eEEEEec-CCCEEEEEe-CC-----CeEEEEeCCCCceeEEEec----CCCCCeE
Q 014104 212 DGTARVFDMYSRKCSQIIRMHCAP-VTSLSLS-EDQLIISGS-SL-----GSIAISGLSSDQRVATLRS----TDCTGIK 279 (430)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~~-~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~----~~~~~v~ 279 (430)
+..+.+||..+++-...-..+... -.+++.. .+.+++.|+ .+ ..+.+||..+++-... .. .....-.
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK 342 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCT
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccc
Confidence 468999998876533221111111 1234444 557888887 34 5799999987664322 10 0000000
Q ss_pred EEEEecCCCEEEEEeCC---------CeEEEEeCCCCceeeeeecCCC---------ceEEEEEee-CCCCeEEEEcCCC
Q 014104 280 TLCYNPCSRLVFAGTTA---------GYASCWDLRTMKSLWETRISPN---------VVYSLQHLQ-NDTSTLVVGGIDG 340 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~s-~~~~~l~s~~~dg 340 (430)
...+..++..++.|+.+ ..+..||..+.........+.. .-.++. ++ .+++.++.|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~-~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM-YDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE-EETTTTEEEEECCBSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe-ccCCCCeEEEEeCCCC
Confidence 01122344544555444 3577888877653322221111 122333 43 3677777777532
Q ss_pred -----------eEEEEEcCCCc
Q 014104 341 -----------VLRVLDQNTGE 351 (430)
Q Consensus 341 -----------~i~vwd~~~~~ 351 (430)
.|.+||..+..
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCC
T ss_pred CCCCCcCCcceEEEcCCCCCCC
Confidence 56677766554
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.23 E-value=0.0014 Score=57.64 Aligned_cols=194 Identities=10% Similarity=0.139 Sum_probs=120.2
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE----cCCc--eEE-Ee-c--CCeEEEEEC--CCCeeeEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY----FDPE--AVV-GC-E--DGTARVFDM--YSRKCSQII 229 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~~-~~-~--dg~i~vwd~--~~~~~~~~~ 229 (430)
...++ ....+.+.+||+++.. +.....+.. ..+.+.+ .+.. ++. .. . +++|.+|++ .+++ +..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~-l~~~~~g~~-nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKM-LHSYNTGKL-NNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCE-EEEECCSCE-EEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred ccEEEEEcCCCCEEEEcCCCcE-EEEccCCCc-ccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 34455 5556788888884433 322222222 1222222 2222 333 33 3 578999966 3443 4444
Q ss_pred ec------CC-CCeEEEEe--cCC--C-EEEEEeCCCeEEEEeCC-------CCceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 230 RM------HC-APVTSLSL--SED--Q-LIISGSSLGSIAISGLS-------SDQRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 230 ~~------~~-~~i~~~~~--~~~--~-~l~~~~~dg~i~vwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.. .. ..+..+++ ++. . ++++...+|.+..|++. +.+.+++|. ..+.+..+.+++....|
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTTEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCCeE
Confidence 21 11 45566666 552 3 67778888999999883 346678887 45689999999988999
Q ss_pred EEEeCCCeEEEEeCC-----CCceeeeee-cCC-CceEEEEEe-eCCCC-eEEEEc-CCCeEEEEEcC-CCceEEEEEec
Q 014104 291 FAGTTAGYASCWDLR-----TMKSLWETR-ISP-NVVYSLQHL-QNDTS-TLVVGG-IDGVLRVLDQN-TGEVLSRCVMD 359 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~-----~~~~~~~~~-~~~-~~v~~l~~~-s~~~~-~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~ 359 (430)
+.+-++.-|..|+.+ +++.+..+. ++- ..+-.|+.+ .++++ +|++++ .++++.+||.. +.+.+..+...
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence 999998778788855 244554442 222 367788733 45555 566555 67899999997 67888888754
Q ss_pred cC
Q 014104 360 IG 361 (430)
Q Consensus 360 ~~ 361 (430)
.+
T Consensus 275 ~~ 276 (355)
T 3amr_A 275 DG 276 (355)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.20 E-value=0.0027 Score=56.07 Aligned_cols=180 Identities=8% Similarity=0.018 Sum_probs=105.1
Q ss_pred EEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE--cCCc-eEEEecCCeEEEEECCCCeee-EEeecCCCCeEEEEe
Q 014104 166 IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY--FDPE-AVVGCEDGTARVFDMYSRKCS-QIIRMHCAPVTSLSL 241 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~ 241 (430)
|+-+....|+.+++++................++.+ .+.. +++-...+.|..+++..+... ..+.........+++
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred EEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 444556778888887753111111111112233333 3344 444455678888888665321 222222234567777
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeee-ecC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWET-RIS 316 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~ 316 (430)
.+ + .++++-...+.|.++++... ....+..........++++|.+..|+... ..+.|..+++.. .....+ ...
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~ 164 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE 164 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS
T ss_pred EcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC
Confidence 74 3 45555566789999998643 33333322445789999999766666555 357888888763 322222 222
Q ss_pred CCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~ 348 (430)
-.....++ +++++..|+.+ +..+.|..+|+.
T Consensus 165 l~~Pngla-vd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 165 IYWPNGLT-LDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp CSCEEEEE-EETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCccEEE-EeccCCEEEEEECCCCEEEEEcCC
Confidence 34567888 99876666544 466889999986
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.00083 Score=59.16 Aligned_cols=137 Identities=8% Similarity=0.171 Sum_probs=94.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCC--------EEEEEe-C--CCeEEEEeC--CCCceeEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ--------LIISGS-S--LGSIAISGL--SSDQRVATLRS 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~--------~l~~~~-~--dg~i~vwd~--~~~~~~~~~~~ 272 (430)
++.....+-+.+||+ +|+.++.+.. +.++.+..-|+- ++++.. . +++|.+|++ .++. +..+..
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 566667789999999 8998888863 667777766531 333333 3 579999966 3443 444421
Q ss_pred ---C--CC-CCeEEEEE--ecC-CC-EEEEEeCCCeEEEEeCC-------CCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 273 ---T--DC-TGIKTLCY--NPC-SR-LVFAGTTAGYASCWDLR-------TMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 273 ---~--~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+.++... +.+-.++ ..+....|+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Egcv-vDd~~g~Lyv 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMA-ADDEYGRLYI 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEE-EETTTTEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEE-EcCCCCeEEE
Confidence 0 11 46777888 674 43 68888899999999883 34566777654 4566776 8888889999
Q ss_pred EcCCCeEEEEEcC
Q 014104 336 GGIDGVLRVLDQN 348 (430)
Q Consensus 336 ~~~dg~i~vwd~~ 348 (430)
+-++.-|..++.+
T Consensus 197 ~eEd~GIw~~da~ 209 (355)
T 3amr_A 197 AEEDEAIWKFSAE 209 (355)
T ss_dssp EETTTEEEEEECS
T ss_pred ecccceEEEEeCC
Confidence 9988766666654
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.17 E-value=0.0075 Score=60.06 Aligned_cols=231 Identities=12% Similarity=0.066 Sum_probs=138.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCc-----ccccCCCCceeee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLR-----SVFPSREGTFMKG 196 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~-----~~~~~~~~~~~~~ 196 (430)
+|+.+ ....|+..++...+....+........+++++....|+ +. ..+.|+.+++++.. .............
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 44433 33567777887665555555556677788988777666 43 35778888887631 1122112222334
Q ss_pred eEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-C-CCeEEEEeCCCCceeEEEec
Q 014104 197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 197 ~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~ 272 (430)
+++.+.+..| ++-...+.|.+.++........+.........|+++|. ..|+.+. . .+.|.+.++.. .....+..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEe
Confidence 5666556554 45556789999998654433333334456789999874 5555443 2 37899999864 44444433
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
........|++++.+..|+.+. ....|..+++........+.. ......+|+ +. .+.+.++-...+.|...|..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~gla-v~-~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEE-Ee-CCEEEEEECCCCEEEEEeCCC
Confidence 2345789999998777666554 456899999874333222222 123345666 42 334455555778899999888
Q ss_pred CceEEEEEe
Q 014104 350 GEVLSRCVM 358 (430)
Q Consensus 350 ~~~~~~~~~ 358 (430)
|+.+..+..
T Consensus 633 G~~~~~l~~ 641 (791)
T 3m0c_C 633 GSDVNLLAE 641 (791)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEeec
Confidence 877766643
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.15 E-value=0.0032 Score=58.21 Aligned_cols=248 Identities=8% Similarity=-0.064 Sum_probs=129.6
Q ss_pred eeEEEEecC--CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-----eEEEEECCCCee
Q 014104 154 ASLVDFDFD--ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSRKC 225 (430)
Q Consensus 154 ~~~~~~~~~--~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 225 (430)
...++++++ +..|+ +...+.|+.+|.+++..............+++...+. |+++...+ .+...+...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 446888884 34444 5444889999997766433222223234455555555 55544321 233333221111
Q ss_pred -eEEeecCCCCeEEEEecC-CC-EEEEEeCCCeEEEEeCCCCceeEEE-ecCCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 014104 226 -SQIIRMHCAPVTSLSLSE-DQ-LIISGSSLGSIAISGLSSDQRVATL-RSTDCTGIKTLCYNPCSRLVFAG-TTAGYAS 300 (430)
Q Consensus 226 -~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 300 (430)
...+. .......++++| +. +.++-..++.|+.+|..++.....+ ..........++|+|+|+.|+.+ ...+.|+
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 01121 223445678887 54 4445456789999999877763333 22122234579999999955544 4567899
Q ss_pred EEeCC--CCce--eeeeecC---------------CCceEEEEEe---------eCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 301 CWDLR--TMKS--LWETRIS---------------PNVVYSLQHL---------QNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 301 i~d~~--~~~~--~~~~~~~---------------~~~v~~l~~~---------s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.++.. ++.. ...+.+. -.....++ + .++|.+.++-...+.|+.++. +| .
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia-v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~ 375 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI-FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-R 375 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE-EEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-E
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE-EEccccccccCCCCcEEEEECCCCEEEEECC-CC-C
Confidence 98765 2321 1112111 12345566 6 566666666666778888874 45 3
Q ss_pred EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEec
Q 014104 353 LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 353 ~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
+.++.+... ....|..||.. .. ...-..-..|+++ +..+++=...+.|+..+++
T Consensus 376 v~t~~G~g~--~~~~G~~dG~~--------~~--------~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGN--SREWGYVDGEL--------RS--------QALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCT--TCSSCCBCEET--------TT--------TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCC--CCccccCCCcc--------cc--------ccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 344433211 00011112210 00 0001234667775 5666666667788888764
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.13 E-value=0.0028 Score=53.59 Aligned_cols=197 Identities=9% Similarity=0.056 Sum_probs=126.5
Q ss_pred EEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEE-eCCeEEEEEc
Q 014104 106 DQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGL-IGTRICIWRR 179 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~~~i~vwd~ 179 (430)
+.+.|-.+.+..+++. + + ++++...++.|...|.. ++.+..+... .....+++..++.++++. .++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3566777789999994 3 4 55557778899999988 8888887643 456668888888765643 4678888887
Q ss_pred CCCcc-----cc-----cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC---CCeeeEEee-------cCCCCeEEE
Q 014104 180 NGLRS-----VF-----PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIR-------MHCAPVTSL 239 (430)
Q Consensus 180 ~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~-------~~~~~i~~~ 239 (430)
..... .. ..........+++.+.+..|+++.......+|.+. ....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 64331 01 11122234567777777677777766555555543 111222221 123456889
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+++|. .+++....+..+..+|.. ++.+..+.-.. -.....|+|+++|++.++ ++...++.|.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 99975 577777788899999965 66665554311 137789999999985444 677777777543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0036 Score=57.88 Aligned_cols=228 Identities=8% Similarity=-0.017 Sum_probs=127.4
Q ss_pred eEEEec--C-CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC----C-eEEEEEcCCCcc--
Q 014104 116 DQCRMK--R-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG----T-RICIWRRNGLRS-- 184 (430)
Q Consensus 116 ~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----~-~i~vwd~~~~~~-- 184 (430)
..++++ + +.|+.+...+.|+.+|+.+++.............++++++++.|+ +... . .+..++.++...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~ 219 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI 219 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee
Confidence 466674 2 466666666889999998876555444445577799999999666 4331 1 344455433221
Q ss_pred -cccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-C-EEEEEeCCCeEEEE
Q 014104 185 -VFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-Q-LIISGSSLGSIAIS 259 (430)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~-~l~~~~~dg~i~vw 259 (430)
.+. .......+++.+.+..|+ +-..++.|..++..++........ .......++++|+ + ++++-...+.|..+
T Consensus 220 ~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 220 TELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp EEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 111 111122344444233444 444678899999876654222221 1234678999976 6 45555677889998
Q ss_pred eCCC--Cce--eEEEecC--C------------CCCeE-EEEEe--------cCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 260 GLSS--DQR--VATLRST--D------------CTGIK-TLCYN--------PCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 260 d~~~--~~~--~~~~~~~--~------------~~~v~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+... +.. ...+.+. . -.... .++.. ++|.+.++-...+.|+.++. +++.. .
T Consensus 298 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~-~ 375 (430)
T 3tc9_A 298 DYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT-T 375 (430)
T ss_dssp EEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE-E
T ss_pred eCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE-E
Confidence 7653 222 2222221 0 01233 45553 34555556556678888884 35432 2
Q ss_pred eecC------------------CCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcC
Q 014104 313 TRIS------------------PNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~------------------~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.+. -.....++ ++| ++.++++-...+.|+.++++
T Consensus 376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECCTTSSSSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCCCcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEEccC
Confidence 2211 12467777 887 45555555566777777654
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.06 E-value=0.0012 Score=65.97 Aligned_cols=232 Identities=9% Similarity=0.033 Sum_probs=125.7
Q ss_pred ceeEEEec--CC-eEEEE-eCCC----eEEEEecCCC-eeEEe-eecCCceeEEEEecCCCEEE-EEeC-----CeEEEE
Q 014104 114 GVDQCRMK--RG-LILTG-VGDK----VMRLWSLEGY-KCVEE-YSLPNAASLVDFDFDESKIV-GLIG-----TRICIW 177 (430)
Q Consensus 114 ~v~~~~~~--~~-~l~s~-~~dg----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~-----~~i~vw 177 (430)
.+....++ || +|+-+ +.+| +|+++|+.++ +.+.. +. .....+.|+||++.|+ ...+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 45666776 56 55533 3333 5999999998 63321 11 1233578999999888 5554 368888
Q ss_pred EcCCCcc----cccCCCCceeeeeEEEEcCCceEEEe---cCCeEEEEECCCC--ee--eEEeecCCCCeEEEEecCCCE
Q 014104 178 RRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDMYSR--KC--SQIIRMHCAPVTSLSLSEDQL 246 (430)
Q Consensus 178 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~--~~--~~~~~~~~~~i~~~~~~~~~~ 246 (430)
++.++.. ++............+++++..|+..+ ....|.++|+.++ +. ........+...++.|+.++.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 8877642 22222223333456677777765544 2356888999775 23 222333455667777666654
Q ss_pred EE-EEeCC----CeEEEEeCCCC-ceeE-EEecCCCC--CeEEEEEecCCCE-EEEEeCCCe--EEEEeC-------CCC
Q 014104 247 II-SGSSL----GSIAISGLSSD-QRVA-TLRSTDCT--GIKTLCYNPCSRL-VFAGTTAGY--ASCWDL-------RTM 307 (430)
Q Consensus 247 l~-~~~~d----g~i~vwd~~~~-~~~~-~~~~~~~~--~v~~~~~~~~~~~-l~~~~~dg~--i~i~d~-------~~~ 307 (430)
|+ ....+ ..|..+|+.++ +... .+. +.. .+..+.+ .++. +++...++. |.++|+ ..+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 44 43333 36778887653 2222 233 222 3445554 4444 456666775 555665 333
Q ss_pred ceeeeeecCC-CceEEEEEe----eCCCC-eEEEEcCC---CeEEEEEcCCCce
Q 014104 308 KSLWETRISP-NVVYSLQHL----QNDTS-TLVVGGID---GVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~~~~~~-~~v~~l~~~----s~~~~-~l~s~~~d---g~i~vwd~~~~~~ 352 (430)
+....+.... ..+..+. . ++++. ++++.+.. ..+..+|+.+++.
T Consensus 409 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLV-ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TCCEECCCCCSSCEEEEC-GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccceEECCCCceeEEEec-cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3133332111 2233332 2 34555 44444332 5688888887763
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=0.007 Score=55.92 Aligned_cols=150 Identities=7% Similarity=0.036 Sum_probs=88.3
Q ss_pred eeEEEEec-CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeee
Q 014104 154 ASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCS 226 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 226 (430)
...++++| ++..|+ +...+.|+.+|++++..............+++...+..|+++... ..+.+.+. .+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence 45688887 355555 544588999999886533222233333445555556645555441 13444443 33221
Q ss_pred --EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEE
Q 014104 227 --QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASC 301 (430)
Q Consensus 227 --~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i 301 (430)
..+.. ......++++| + .++++-..++.|..+|...+................++|+|+|++|+ +-...+.|..
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22221 23456788887 5 45555556789999998876543333221224578999999999555 4456778999
Q ss_pred EeCC
Q 014104 302 WDLR 305 (430)
Q Consensus 302 ~d~~ 305 (430)
++..
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8765
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.0016 Score=64.93 Aligned_cols=191 Identities=9% Similarity=-0.024 Sum_probs=107.5
Q ss_pred eeEEEEe-cCCCEEE-EEe-CC----eEEEEEcCCC-cccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEEC
Q 014104 154 ASLVDFD-FDESKIV-GLI-GT----RICIWRRNGL-RSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDM 220 (430)
Q Consensus 154 ~~~~~~~-~~~~~l~-~~~-~~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~ 220 (430)
....+|+ |||+.|+ +.. +| .|+++|++++ +.+.. ..........|++++..|+....+ ..|.++++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4558999 9999988 333 22 4999999998 63211 111122346677777776666654 36888898
Q ss_pred CCCee--eEEee-cCCCCeEEEEecCC-CEEEEEe---CCCeEEEEeCCCCc-ee--EEEecCCCCCeEEEEEecCCCEE
Q 014104 221 YSRKC--SQIIR-MHCAPVTSLSLSED-QLIISGS---SLGSIAISGLSSDQ-RV--ATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 221 ~~~~~--~~~~~-~~~~~i~~~~~~~~-~~l~~~~---~dg~i~vwd~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.+++. ...+. ........+.|+|+ ++|+..+ ....|.++|+.++. .. ..+..........+.|+..+.++
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV 334 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence 87642 23333 22345677889976 5555544 24478889998753 22 34433234455556555433444
Q ss_pred EEEeCC----CeEEEEeCCCCceeee-eecCCC--ceEEEEEeeCCCCeEEEEcCCCe--EEEEEc
Q 014104 291 FAGTTA----GYASCWDLRTMKSLWE-TRISPN--VVYSLQHLQNDTSTLVVGGIDGV--LRVLDQ 347 (430)
Q Consensus 291 ~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~--i~vwd~ 347 (430)
+....+ ..|..+|+.++..... +..+.. .+..+. +. .+.++++...++. |.++|+
T Consensus 335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~-~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA-VR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE-EC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE-EE-CCEEEEEEEeCCEEEEEEEec
Confidence 444443 3677788765322222 333332 344444 32 2344556666775 555665
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.02 E-value=0.0065 Score=56.18 Aligned_cols=229 Identities=7% Similarity=-0.064 Sum_probs=129.6
Q ss_pred eeEEEec-C---CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCC-----eEEEEEcCCCcc-
Q 014104 115 VDQCRMK-R---GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT-----RICIWRRNGLRS- 184 (430)
Q Consensus 115 v~~~~~~-~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~i~vwd~~~~~~- 184 (430)
...+++. + +.|+.+...+.|+.+|..+++.............++++++++.+++...+ .+...+......
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE 220 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence 4567774 2 56666655589999999887766555444567789999999944454422 233333322211
Q ss_pred --cccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCeeeEEe-ec-CCCCeEEEEecCC-C-EEEEEeCCCeEE
Q 014104 185 --VFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQII-RM-HCAPVTSLSLSED-Q-LIISGSSLGSIA 257 (430)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~-~~-~~~~i~~~~~~~~-~-~l~~~~~dg~i~ 257 (430)
... .......+++.+....|+.+ ..++.|+.+|..++.....+ .. ....-..++++|+ + ++++-...+.|.
T Consensus 221 ~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 221 RLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp EEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred ccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 111 11111224444423345544 45678999998777652222 21 1223346999976 5 455555678999
Q ss_pred EEeCC--CCce--eEEEecC--------------CCCCeEEEEE---------ecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 258 ISGLS--SDQR--VATLRST--------------DCTGIKTLCY---------NPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 258 vwd~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
.++.. ++.. ...+.+. .-.....+++ .++|++.++-...+.|+.++. ++...
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 98865 3321 1222221 0124677999 677777777667788999985 45332
Q ss_pred eeeecC------------------CCceEEEEEee-CCCCeEEEEcCCCeEEEEEcC
Q 014104 311 WETRIS------------------PNVVYSLQHLQ-NDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 311 ~~~~~~------------------~~~v~~l~~~s-~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.+. -.....++ ++ ++|.++++-...+.|+.++++
T Consensus 378 -t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 -TYAGRGNSREWGYVDGELRSQALFNHPTSIA-YDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEECCCTTCSSCCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEeCCCCCccccCCCccccccEeCCCcEEE-EECCCCEEEEEeCCCCEEEEEecC
Confidence 22211 12355676 76 555555555566677776653
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.01 E-value=0.016 Score=57.79 Aligned_cols=189 Identities=8% Similarity=-0.036 Sum_probs=109.5
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCC----eeeEEeecCCCCeEEE
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSL 239 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~ 239 (430)
+|+.+....|+..++.................+.+......| ++-...+.|+.+++... .....+.........|
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 444566677888887765432222222222233333333444 44455677888887642 2222333233455677
Q ss_pred EecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeec
Q 014104 240 SLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 240 ~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~ 315 (430)
++.+ + +++++-...+.|.+.++.... ...+..........|+++|.+.+|+.... .+.|...++........+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 8774 3 566666678899999987443 44443324456899999998666665543 36799998874333322333
Q ss_pred CCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-.....|+ +++.+..|+.+ ...+.|...++. |.....+
T Consensus 556 ~l~~P~GLa-vD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v 595 (791)
T 3m0c_C 556 NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 595 (791)
T ss_dssp SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred CCCCceEEE-EecCCCeEEEEeCCCCcEEEEecC-CCceEEE
Confidence 335678888 88776666555 456789999986 4433333
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.0084 Score=53.16 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=132.6
Q ss_pred cccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeec-----CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 111 HSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSL-----PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 111 h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
-...+.++.+. ++.++.++.+|.|. ...+.++.-..... ......+.+.+ +..++++..+.|.. ..+.++.
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSS
T ss_pred CCCcEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCC
Confidence 34578899984 44333356677653 33344432222211 11334466654 33444556664443 3443432
Q ss_pred ---cccC--CCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 185 ---VFPS--REGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 185 ---~~~~--~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+... ..+.. ..+.. .+..++.++.+|.|..- ...|+.-... ......+..+.+.++ .+++.+ .+|.+
T Consensus 111 W~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~ 185 (327)
T 2xbg_A 111 WSQIPLDPKLPGSP---RLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSF 185 (327)
T ss_dssp CEECCCCTTCSSCE---EEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSE
T ss_pred ceECccccCCCCCe---EEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcE
Confidence 1111 11222 22332 23345555556654332 1234332222 234567889999866 555544 44544
Q ss_pred -EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCCCC
Q 014104 257 -AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQNDTS 331 (430)
Q Consensus 257 -~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~~~ 331 (430)
+-+|- .++.-..+.......+..+.+.++++.++ ++.+|.+++.+...++.-..+.. +...+..+. +.+++.
T Consensus 186 ~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~-~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA-YRTPNE 262 (327)
T ss_dssp EEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE-ESSSSC
T ss_pred EEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEE-ecCCCE
Confidence 44442 12322223322455789999999887654 45678777764332333222221 223578887 777777
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVV 410 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~ 410 (430)
.++++. +|.| ++..+.|+.-..+... ..+...+.++.+ ++..++
T Consensus 263 ~~~~g~-~g~i-~~S~DgG~tW~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~~ 307 (327)
T 2xbg_A 263 VWLAGG-AGAL-LCSQDGGQTWQQDVDV---------------------------------KKVPSNFYKILFFSPDQGF 307 (327)
T ss_dssp EEEEES-TTCE-EEESSTTSSCEECGGG---------------------------------TTSSSCCCEEEEEETTEEE
T ss_pred EEEEeC-CCeE-EEeCCCCcccEEcCcc---------------------------------CCCCCCeEEEEEECCCceE
Confidence 666554 6655 3334434322222110 011235667777 456677
Q ss_pred EeeCCCeEEEEE
Q 014104 411 TTHNSKYIRLWK 422 (430)
Q Consensus 411 t~~~Dg~v~vw~ 422 (430)
.++.+|.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 778899776554
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.94 E-value=0.00014 Score=71.66 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=129.3
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC----Ccc-cccCCCCceeeeeEEEEcC
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG----LRS-VFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~----~~~-~~~~~~~~~~~~~~~~~~~ 203 (430)
.+.|+..++.+.+....+........++|++.+..|+ + ...+.|..+++.+ ... ............+++.+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 3578888888766655555555666789998877776 3 3457899999876 221 1111111112234444344
Q ss_pred CceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-C-CCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 204 PEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 204 ~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
..|+. -...+.|.++++........+.........++++|. ..|+.+. . .+.|.++++.. .....+.........
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPN 543 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCcc
Confidence 44444 345678999998654433333322344577888863 4444333 2 26788888753 333333221233567
Q ss_pred EEEEecCCCEEE-EEeCCCeEEEEeCCCCceeeeee--cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 280 TLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLWETR--ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 280 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|+|+|++..|+ +-...+.|..+|+........+. .......+|+ +..+ .++++....+.|..+|..+|+.+..+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gla-vd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCE-EETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeE-EECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 899998765554 54566789999987432222121 1112334555 4333 44455556789999998888887776
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 622 ~~ 623 (699)
T 1n7d_A 622 AE 623 (699)
T ss_dssp CT
T ss_pred ec
Confidence 54
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.90 E-value=0.033 Score=58.01 Aligned_cols=177 Identities=11% Similarity=0.076 Sum_probs=90.8
Q ss_pred ccceeEEEec---C-----CeEEEEeC-CCeEEEEecCCCeeEEeeecCC--ceeEEEEec-CC-CEEE-EEeCCeEEEE
Q 014104 112 SVGVDQCRMK---R-----GLILTGVG-DKVMRLWSLEGYKCVEEYSLPN--AASLVDFDF-DE-SKIV-GLIGTRICIW 177 (430)
Q Consensus 112 ~~~v~~~~~~---~-----~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~l~-~~~~~~i~vw 177 (430)
.+.|.|+++. + .+++.|.. |++|+|+++.+.+.+.....+. .+..+.+.. .+ .+|. +-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4578999883 1 38888986 9999999999877765554432 333333332 22 2344 7788888766
Q ss_pred EcC--CCcccc---cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCe-EEEEecC-C--CEE
Q 014104 178 RRN--GLRSVF---PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-TSLSLSE-D--QLI 247 (430)
Q Consensus 178 d~~--~~~~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-~~~~~~~-~--~~l 247 (430)
.++ ++...- ............+...+.. +++.+ +....++--+ ++.. ...-....+ ....|+. . +-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEE-EEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceE-EeccChHHhceEeccCcccCCCcE
Confidence 654 332110 0011111122222222222 33333 4444444432 3221 111112233 2334442 1 334
Q ss_pred EEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 248 ISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+..+ ++.+++.-+.+.+ .++++. ....+..++++|..+.++.+.
T Consensus 710 v~~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 710 ALAN-NSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp EEEC-SSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred EEEc-CCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence 4333 4558888775432 344454 456789999999887665543
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.84 E-value=0.012 Score=50.97 Aligned_cols=230 Identities=7% Similarity=0.080 Sum_probs=138.1
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE 211 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (430)
..|.|-|+.++........ .....-++|..+.++--....+.++|+++.+.+....-.. .++-|.+.++..+.-=.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi--~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e--~VvfWkWis~~~L~lVT 124 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALVT 124 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC--CCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSS--CEEEEEECSSSEEEEEE
T ss_pred CEEEEEECCCCCCcccccc--ccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCC--ccEEEEecCCCeEEEEc
Confidence 4788889887655433222 2334456888888885558999999999987543222211 35678887777333233
Q ss_pred CCeEEEEECCC-CeeeEEeecCC----CCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 212 DGTARVFDMYS-RKCSQIIRMHC----APVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 212 dg~i~vwd~~~-~~~~~~~~~~~----~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
+..|+-|++.. ..+.+.+..|. ..|.....+++ ++++..+ -.|.+.+|..+.+ .-+.+++ |....
T Consensus 125 ~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG-haa~F 202 (365)
T 2xzh_A 125 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG-HAASF 202 (365)
T ss_dssp SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC-SEEEE
T ss_pred CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeee-eeeee
Confidence 45899999974 35666666553 35556666655 5444332 2378889997743 4455555 43322
Q ss_pred EEEEEe--cCCC-EEEEEeC---CCeEEEEeCCCC---ceee-----e-e-e--cCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 279 KTLCYN--PCSR-LVFAGTT---AGYASCWDLRTM---KSLW-----E-T-R--ISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 279 ~~~~~~--~~~~-~l~~~~~---dg~i~i~d~~~~---~~~~-----~-~-~--~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..+.+. +... +++.+.. .+++.+.++... .+.. . + . ...+-..++. .++.-..++.-+.-|
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamq-vs~kygviyviTK~G 281 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKYG 281 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEE-EETTTTEEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEE-ecccCCEEEEEeCCc
Confidence 222221 1111 2222222 257888887432 1111 1 1 1 1123344666 777777888888999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
.|++||+++|.++..-+-..+.+++.+.
T Consensus 282 ~ihlyDleTgt~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 282 YIHLYDLETGTCIYMNRISGETIFVTAP 309 (365)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEEcccCcEEEEeccCCCceEEecc
Confidence 9999999999999988877665554443
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.82 E-value=0.011 Score=49.96 Aligned_cols=193 Identities=8% Similarity=-0.022 Sum_probs=110.4
Q ss_pred CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee--
Q 014104 152 NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-- 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 225 (430)
.....++++|+++.|+ ...++.|...|.+ ++.+-.. ........+++...+..+++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 3466699999887766 4456778888887 4322111 1112223334433333244444567888888765432
Q ss_pred -eEEee------cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC---CCceeEEEec------CCCCCeEEEEEecCCC
Q 014104 226 -SQIIR------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS---SDQRVATLRS------TDCTGIKTLCYNPCSR 288 (430)
Q Consensus 226 -~~~~~------~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~------~~~~~v~~~~~~~~~~ 288 (430)
+.... ..+.....++++|. +.|+++.......+|.+. ....+..+.. .+...+.+++++|...
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 22221 12345689999975 566666554444444432 1112222211 1233678999998654
Q ss_pred -EEEEEeCCCeEEEEeCCCCceeeeeecCC---------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 289 -LVFAGTTAGYASCWDLRTMKSLWETRISP---------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 289 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+++....+..+..+|.. ++.+..+.... ..--.++ +.++|+ |+..++.+.++.+.-.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia-~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVA-MDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEE-ECTTCC-EEEEETTTEEEEEEC-
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeE-ECCCCC-EEEEcCCceEEEEEec
Confidence 55566667888999976 55555443321 2456888 999997 4445677777777644
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.82 E-value=0.013 Score=50.76 Aligned_cols=218 Identities=14% Similarity=0.194 Sum_probs=137.0
Q ss_pred CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCCc-eeeeeEEEEcCCc
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREGT-FMKGLCMRYFDPE 205 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 205 (430)
...++.|+|+++.+.++.+..++.+....|- +.+.|+--.+..|+.|++++.. .++..+..- ...++....+...
T Consensus 85 ag~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~ 163 (365)
T 2xzh_A 85 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ 163 (365)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCEEEEEEC-SSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTS
T ss_pred cCCeEEEechHHhhhhcceecCCccEEEEec-CCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCC
Confidence 3789999999999999999988777766665 3455666678899999998633 233332211 1233333333332
Q ss_pred ---eEEEe------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----CEEEEEeC---CCeEEEEeCCCC---ce
Q 014104 206 ---AVVGC------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----QLIISGSS---LGSIAISGLSSD---QR 266 (430)
Q Consensus 206 ---l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~~~~~---dg~i~vwd~~~~---~~ 266 (430)
+++|- -.|.+.+|..+. +.-+.+++|.+....+....+ .++..+.. .+.+.+-++... ..
T Consensus 164 kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~ 242 (365)
T 2xzh_A 164 KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 242 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC
T ss_pred CEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC
Confidence 33332 247889999854 455678888666555555311 23444432 258888888532 11
Q ss_pred -----eEE-Eec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 267 -----VAT-LRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 267 -----~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
... +.. ...+-.-++..++.-..++.-+.-|.|++||+.++.++..-+-..+.|..-+ ...+..=++....
T Consensus 243 ~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta-~~~~~~Gi~~Vnr 321 (365)
T 2xzh_A 243 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNR 321 (365)
T ss_dssp CCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EEGGGTEEEEEET
T ss_pred CcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEec-ccCCCCcEEEEcC
Confidence 111 111 1133456788888878888889999999999999999988777777776655 3333333444446
Q ss_pred CCeEEEEEcCCC
Q 014104 339 DGVLRVLDQNTG 350 (430)
Q Consensus 339 dg~i~vwd~~~~ 350 (430)
.|.|.--.++..
T Consensus 322 ~GqVl~v~v~~~ 333 (365)
T 2xzh_A 322 KGQVLSVCVEEE 333 (365)
T ss_dssp TCEEEEEEECTT
T ss_pred CCEEEEEEECcc
Confidence 666665555543
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.79 E-value=0.0076 Score=52.62 Aligned_cols=215 Identities=9% Similarity=-0.011 Sum_probs=108.7
Q ss_pred CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCc---cc-ccCCCCceeeeeEEE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLR---SV-FPSREGTFMKGLCMR 200 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~---~~-~~~~~~~~~~~~~~~ 200 (430)
..+.+||+.+.+....-..+.. ....+...++..++ ++.+ ..+.+||+.+.+ -. ............+..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899887654432222211 11223334555555 5443 468899988765 21 111111111122222
Q ss_pred EcCCceEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeE
Q 014104 201 YFDPEAVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVA 268 (430)
Q Consensus 201 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 268 (430)
..+..++.|+.+ ..+.+||+.+.+-.. .+...... .++....+.+++.|+.+ ..+.+||+.+.+-..
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 333335566543 468899988765322 22211111 12233355677777654 468899998765433
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC--
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-- 339 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-- 339 (430)
.-.......-.++.. -+++.++.|+.+ ..+.+||+.+.+-.. .+....... ++. ..+++.++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~--~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GAT--VLRGRLYAIAGYDGN 265 (301)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE--EETTEEEEECCBCSS
T ss_pred CCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEE--EECCEEEEEcCcCCC
Confidence 211111111112222 266777777664 468999998764322 121111111 222 2366777777755
Q ss_pred ---CeEEEEEcCCCc
Q 014104 340 ---GVLRVLDQNTGE 351 (430)
Q Consensus 340 ---g~i~vwd~~~~~ 351 (430)
..+.+||+.+.+
T Consensus 266 ~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 266 SLLSSIECYDPIIDS 280 (301)
T ss_dssp SBEEEEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 467888987654
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.76 E-value=0.035 Score=53.88 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=140.2
Q ss_pred CeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc-cccCCCCceeeee
Q 014104 123 GLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS-VFPSREGTFMKGL 197 (430)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~-~~~~~~~~~~~~~ 197 (430)
.+|+.+ ....|+..|+++......+.. -.....++|++.+..|+ +. .++.|..+++++... ............+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 344443 456889999987554333332 24566789999877777 43 468899999886542 1111111223345
Q ss_pred EEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecC
Q 014104 198 CMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 198 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
++.+.+..| ++-...+.|.+.++........+...-.....++++|. ..|+.+. ..+.|...++.... ...+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~- 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP- 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-
Confidence 555555554 44455688999998644322222233456789999974 5555544 35688888876433 333332
Q ss_pred CCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 274 DCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.......++++++++.|+.+ ...+.|..+|+..... ..+........+++ +.. +...++-...+.|...|..+|+.
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~gla-v~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLT-QYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEE-EET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEE-EEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 34578999999987766655 4567899999875433 33333334556777 543 45555555678999999877765
Q ss_pred EEEEE
Q 014104 353 LSRCV 357 (430)
Q Consensus 353 ~~~~~ 357 (430)
...+.
T Consensus 241 ~~~l~ 245 (628)
T 4a0p_A 241 RTIIQ 245 (628)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 54443
No 298
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00085 Score=59.28 Aligned_cols=187 Identities=9% Similarity=0.064 Sum_probs=108.3
Q ss_pred CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEe-----cCCCEEEE--EeCCeEEEEEcCCCcccccCCCCcee
Q 014104 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD-----FDESKIVG--LIGTRICIWRRNGLRSVFPSREGTFM 194 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~~~~~ 194 (430)
++.++.++.||.|.-.|..+|+....++.......+... .++..+++ ..||.+..++.+++...+........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 348999999999999999999999988765111122211 12233444 57899999998877533221111100
Q ss_pred ee--eEEE-----------EcCCceEEEecCCeEEEEECCCCeeeEEeecCC--CC-----eEEEE---e---cCCCEEE
Q 014104 195 KG--LCMR-----------YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC--AP-----VTSLS---L---SEDQLII 248 (430)
Q Consensus 195 ~~--~~~~-----------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----i~~~~---~---~~~~~l~ 248 (430)
.. +... ..+..+++|+.+|.+...|+.+|+.+..+.... +. ..|.. + ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 00 1100 034448899999999999999999999886321 10 11111 1 1135677
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec----CCCCC--eE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS----TDCTG--IK-TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
.+..+..+.+.+ ++|+ +..+.- ..... +. .-..+.++.+ +.++.||.|.-+|..+|+.+.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 777777777766 4554 222210 00000 00 0001124555 557899999999999998876
No 299
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.74 E-value=9.3e-06 Score=72.78 Aligned_cols=49 Identities=33% Similarity=0.548 Sum_probs=42.6
Q ss_pred CCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHH
Q 014104 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLL 67 (430)
Q Consensus 19 ~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~ 67 (430)
.+...+..||+|++.+||+||+..++.++++|||+|+.++.++.+|+.+
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 3566789999999999999999999999999999999999888888644
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.74 E-value=0.0096 Score=51.95 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred eEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCe---eeE--EeecCCCCeEEEEe
Q 014104 173 RICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRK---CSQ--IIRMHCAPVTSLSL 241 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~---~~~--~~~~~~~~i~~~~~ 241 (430)
.+.+||+.+.+-. ............+....+..++.|+.+ ..+.+||+.+.+ -.. .+......- ++..
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~ 110 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT 110 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE
Confidence 4666776665411 111111111112223333336666654 468899988765 221 111111112 2223
Q ss_pred cCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee
Q 014104 242 SEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW 311 (430)
Q Consensus 242 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 311 (430)
..+.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 355666777643 368899988766433222111111122222 267777777654 458899988754322
Q ss_pred --eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 312 --ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 312 --~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
.+....... +++ ..+++.++.|+.+ ..+.+||+.+.+
T Consensus 190 ~~~~p~~r~~~-~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 190 VTPMATKRSGA-GVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ECCCSSCCBSC-EEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCcccccc-eEE--EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 111111111 222 2256777777654 467888887654
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.019 Score=50.11 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=99.6
Q ss_pred EEEEcCCceEEEe-cCCeEEEEECCCCeeeEE-eec----CCC--CeEEEEe---cCCC-EEEEEe-------------C
Q 014104 198 CMRYFDPEAVVGC-EDGTARVFDMYSRKCSQI-IRM----HCA--PVTSLSL---SEDQ-LIISGS-------------S 252 (430)
Q Consensus 198 ~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~----~~~--~i~~~~~---~~~~-~l~~~~-------------~ 252 (430)
.|......+..++ ..++|..||...+..... +.+ ... .+..+.+ .|+. ++++.. .
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 3333334455555 689999999875543333 221 111 3578999 4554 444333 2
Q ss_pred CCeEEEEeCC---CCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeCC-CeEEEEeCCCCceeeeee--
Q 014104 253 LGSIAISGLS---SDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTTA-GYASCWDLRTMKSLWETR-- 314 (430)
Q Consensus 253 dg~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~-- 314 (430)
+..|..+|+. +++.+....-. .......++..++|+..++++.. +.|...+.... .+..+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeec
Confidence 6789999999 88877665421 11247899999999999988888 88888877633 222221
Q ss_pred ----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 315 ----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 315 ----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
......+.++ ++|+|..|++....|.|..+|+.+
T Consensus 178 ~~~~~~~~G~nGIv-~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 178 SGNGGQRPGYSGIT-FDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCSSSCCSCSEEE-EETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCcccccCcceEE-EeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1112366888 999999888887799999999874
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.73 E-value=0.039 Score=53.57 Aligned_cols=184 Identities=8% Similarity=-0.051 Sum_probs=111.4
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCC--ceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREG--TFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
+|+-+....|+..++++.......... .....+.+.+....++ +-..++.|..+++........+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 455567888999999876432211111 1222344444444444 4456788998888654333333322234567777
Q ss_pred cC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCC
Q 014104 242 SE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 242 ~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
.+ +++.++-...+.|.+.++.... ...+..........++++|....|+... ..+.|...++.... ...+...-
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~ 165 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNV 165 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSC
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCC
Confidence 63 3555666677899999986443 3333322445789999999666666554 25678888876433 33332334
Q ss_pred CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCc
Q 014104 318 NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGE 351 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~ 351 (430)
.....++ ++++++.|+.+ ...+.|...|+....
T Consensus 166 ~~P~Gla-lD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 166 GRANGLT-IDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp SSEEEEE-EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcceEE-EccccCEEEEEECCCCEEEEEcCCCCc
Confidence 5678888 99877666555 466789999987443
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.72 E-value=0.00019 Score=70.78 Aligned_cols=179 Identities=8% Similarity=-0.001 Sum_probs=98.8
Q ss_pred EEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCC----CeeeEEeecCCCCeEEEEe
Q 014104 167 VGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 167 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~ 241 (430)
+.+..+.|+..++++...............+.+.+....|+.+ ...+.|+.+++.+ ......+.........+++
T Consensus 381 l~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 381 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp CCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred EecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 3444567888888776533222222222334555444555444 3457888888764 2222222111123456777
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeee-ecC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWET-RIS 316 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~ 316 (430)
.+ + .++++-...+.|.++++.... ...+..........++++|.+.+|+.... .+.|..+++... ....+ ...
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~ 538 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTEN 538 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCC
Confidence 63 3 455555667899999987544 33333212345788899997665554432 267888877632 22222 122
Q ss_pred CCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~ 348 (430)
-.....|+ ++|++..| ++-+..+.|..+|+.
T Consensus 539 l~~PnGla-vd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 539 IQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CSSCCCEE-ECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCCccEEE-EeccCCEEEEEecCCCeEEEEccC
Confidence 24456787 88876555 444566789999986
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.72 E-value=0.025 Score=51.06 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=142.8
Q ss_pred CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCCc-eeeeeEEEEcCCc
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREGT-FMKGLCMRYFDPE 205 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 205 (430)
...++.|+|+++.+.++.+..++.+....|-. .+.|+--.+..|+.|++++.. .++..+..- ...++....+...
T Consensus 84 ag~~lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~ 162 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ 162 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTS
T ss_pred cCCeEEEEchHHhhhhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCC
Confidence 37899999999999999999888877777754 445666678899999997633 233332211 1233333333332
Q ss_pred ---eEEEe------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----CEEEEEeCC---CeEEEEeCCCC---ce
Q 014104 206 ---AVVGC------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----QLIISGSSL---GSIAISGLSSD---QR 266 (430)
Q Consensus 206 ---l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~~~~~d---g~i~vwd~~~~---~~ 266 (430)
+++|- -.|.+.+|..+. +.-+.+++|.+....+....+ .++..+... +.+.+-++... ..
T Consensus 163 kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 163 KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred CeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 33332 247889999854 455678888776666666421 344444432 78899888543 11
Q ss_pred -----eEEEec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 267 -----VATLRS---TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 267 -----~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
...+.- ...+-..++..++.-..++.-+.-|.|++||+.++.++..-+-....|...+ ......=++....
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~-~~~~~~Gi~~Vnr 320 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNR 320 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EETTTTEEEEEET
T ss_pred CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEec-ccCCCCcEEEEcc
Confidence 111110 1123456788888888888999999999999999999988777777777665 4444444555557
Q ss_pred CCeEEEEEcCCCc
Q 014104 339 DGVLRVLDQNTGE 351 (430)
Q Consensus 339 dg~i~vwd~~~~~ 351 (430)
.|.|.--.++...
T Consensus 321 ~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 321 KGQVLSVCVEEEN 333 (494)
T ss_dssp TCEEEEEEECTTT
T ss_pred CceEEEEEEcccc
Confidence 7777766666443
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.67 E-value=0.011 Score=51.61 Aligned_cols=223 Identities=9% Similarity=0.046 Sum_probs=109.7
Q ss_pred eEEEEeCC----CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCccc-ccCCCC
Q 014104 124 LILTGVGD----KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRSV-FPSREG 191 (430)
Q Consensus 124 ~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~-~~~~~~ 191 (430)
.++.|+.+ ..+.+||+.+.+....-..+.. ........++..++ ++.+ ..+.+||..+.+-. ......
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 97 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD 97 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc
Confidence 44455543 3678889887654332222211 11122233555544 4433 45888998876521 111111
Q ss_pred ceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-------CeEE
Q 014104 192 TFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-------GSIA 257 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-------g~i~ 257 (430)
......+....+..++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+.+ ..+.
T Consensus 98 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 98 RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEE
T ss_pred cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEE
Confidence 111112223344446666654 3578899877653221 2111111 22333355666666542 4588
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~ 330 (430)
+||+.+.+-...-.......-.+++.. ++++++.|+.+ ..+.+||+.+.+-.. .+...... .+++ ..++
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~--~~~~ 252 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC--AVNG 252 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE--EETT
T ss_pred EEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE--EECC
Confidence 999987654332111111111222222 66777777654 368999998754322 11111111 1122 2366
Q ss_pred CeEEEEcCCC-----eEEEEEcCCCc
Q 014104 331 STLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 331 ~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
+.++.|+.++ .+.+||+.+.+
T Consensus 253 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 253 LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEECCcCCCcccccEEEEcCCCCe
Confidence 7777777553 47888887654
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.01 Score=51.91 Aligned_cols=141 Identities=10% Similarity=0.044 Sum_probs=71.7
Q ss_pred eEEEecC----CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCED----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL------GSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~d----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~ 273 (430)
++.|+.+ ..+.+||+.+++-... +......- +++...+.+++.|+.+ ..+.+||..+.+-...-...
T Consensus 59 yv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p 137 (306)
T 3ii7_A 59 YILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML 137 (306)
T ss_dssp EEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS
T ss_pred EEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc
Confidence 5555543 6788999887753222 21111112 2223355677777655 46899999877643321111
Q ss_pred CCCCeEEEEEecCCCEEEEEeC---------CCeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC---
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTT---------AGYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID--- 339 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d--- 339 (430)
....-.+++. -++++++.|+. -..+.+||+.+.+-.. .+...... .+++ . -+++.++.|+.+
T Consensus 138 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~-~~~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 138 TQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLV-F-VKDKIFAVGGQNGLG 213 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEE-E-ETTEEEEECCEETTE
T ss_pred CCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEE-E-ECCEEEEEeCCCCCC
Confidence 1111112222 26666666653 3458899998764321 11111111 1222 1 256666666643
Q ss_pred --CeEEEEEcCCCc
Q 014104 340 --GVLRVLDQNTGE 351 (430)
Q Consensus 340 --g~i~vwd~~~~~ 351 (430)
..+.+||+.+.+
T Consensus 214 ~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 214 GLDNVEYYDIKLNE 227 (306)
T ss_dssp EBCCEEEEETTTTE
T ss_pred CCceEEEeeCCCCc
Confidence 357777777553
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.63 E-value=0.025 Score=54.78 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=122.9
Q ss_pred CCeEEEEecCCCe--eEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 204 (430)
...|+..|+.... .......-.....+++++.+..|+ +.. .+.|..+++++.. .......-.....+++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4567777777542 222333345566789998777777 433 5778888887653 122211112334566665556
Q ss_pred ceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.++ +-...+.|.+.++........+...-.....+++.|. ..++.+. ..+.|...++. |.....+....-.....
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 175 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcE
Confidence 544 4456789999998644332222233445678899864 5454443 24677777765 44333333223447899
Q ss_pred EEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 281 LCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 281 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
+++++++..|+.+ ...+.|..+|+..........+......+++ +..+ ...++-...+.|...|..+|+....+
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~-~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-LFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEE-ESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEE-EeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 9999976666654 4567799999875333222221222334566 4333 44444446778999998877654443
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.60 E-value=0.023 Score=49.67 Aligned_cols=224 Identities=9% Similarity=0.027 Sum_probs=113.7
Q ss_pred eEEEEeC--CCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC----CeEEEEEcCCCccc-ccCCCCcee
Q 014104 124 LILTGVG--DKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG----TRICIWRRNGLRSV-FPSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~----~~i~vwd~~~~~~~-~~~~~~~~~ 194 (430)
.++.|+. ...+.+||..+.+-...-..+.. ....+...++..++ ++.+ ..+.+||+.+.+-. .........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4445554 35788999888664433222211 11122234555554 5433 67889998876521 111111111
Q ss_pred eeeEEEEcCCceEEEecC------CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeC---------CCeEE
Q 014104 195 KGLCMRYFDPEAVVGCED------GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSS---------LGSIA 257 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~---------dg~i~ 257 (430)
...+....+..++.|+.+ ..+.+||..+.+-... +...... .++....+.+++.|+. -..+.
T Consensus 94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEEECCEEEEECCCCCCCCcccccceEE
Confidence 122223344446666654 4688999887653221 1111111 1223335566666653 34588
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCcee--eeeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSL--WETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~~~ 330 (430)
+||+.+.+-...-.......-.++... ++++++.|+.+ ..+.+||+.+.+-. ..+.........+. + ++
T Consensus 173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~--~~ 248 (306)
T 3ii7_A 173 VYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-V--GS 248 (306)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-E--TT
T ss_pred EeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-E--CC
Confidence 999987754322111111111222222 66777776643 35899999875422 22221111222222 3 67
Q ss_pred CeEEEEcCC-----CeEEEEEcCCCce
Q 014104 331 STLVVGGID-----GVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~d-----g~i~vwd~~~~~~ 352 (430)
+.++.|+.+ ..+.+||+.+.+-
T Consensus 249 ~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 249 IVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 777888744 5688899887643
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.57 E-value=0.044 Score=49.97 Aligned_cols=215 Identities=9% Similarity=-0.041 Sum_probs=124.4
Q ss_pred ccceeEEEec--CCeEEEE-eCCCeEEEEecCCC----eeEEeee-cCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC
Q 014104 112 SVGVDQCRMK--RGLILTG-VGDKVMRLWSLEGY----KCVEEYS-LPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG 181 (430)
Q Consensus 112 ~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~ 181 (430)
...+..++|+ ++.|+-+ ...+.|..+++... .....+. .......+++.+.+..|+ + ...+.|.+.++++
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4456777884 4544444 45678888887652 2222222 224556688998666665 3 3467899999887
Q ss_pred Cccc-ccCCCCceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEE-eCCCeE
Q 014104 182 LRSV-FPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISG-SSLGSI 256 (430)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~-~~dg~i 256 (430)
.... +..........+++.+.+..|+.+.. .+.|...++............-.....+++++ +..|+.+ +..+.|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 6532 21112222334455554555554442 36788888754333223333335678999995 4555444 566789
Q ss_pred EEEeCCCCceeEEEecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 257 AISGLSSDQRVATLRST--DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
..+|+.... ...+... .......+++. .+.++++-...+.|..+|..+++.+..+........++..++|
T Consensus 271 ~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~ 342 (400)
T 3p5b_L 271 SSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN 342 (400)
T ss_dssp EEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESG
T ss_pred EEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEee
Confidence 999986433 3333221 22356677773 4455556666788999998888777776654445666664544
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.57 E-value=0.11 Score=54.23 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=153.0
Q ss_pred eEEEEeCCCeEEEEec--CCCeeEEe---eecCCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCcccccCCCCceeeee
Q 014104 124 LILTGVGDKVMRLWSL--EGYKCVEE---YSLPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~--~~~~~~~~---~~~~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (430)
+|..|-.||.+.-+.+ .+|+.... +-+...+....+...+.. +++..+....++.-++. ..+...... .+.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~--~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLK--EVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSS--CCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChH--Hhc
Confidence 8889999998865544 45554422 333344444555554443 33666666666554432 221111111 122
Q ss_pred EEEEcC----Cc-eEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeC-----------------
Q 014104 198 CMRYFD----PE-AVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSS----------------- 252 (430)
Q Consensus 198 ~~~~~~----~~-l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~----------------- 252 (430)
.++++. +. ++. ..++.++|..+..-+ .++.+. -...+..++++|. +.++.+..
T Consensus 696 ~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 233332 22 444 445568888765432 223332 2345666777754 33322210
Q ss_pred --------------------------------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEe---cC-CCEEEEEe--
Q 014104 253 --------------------------------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYN---PC-SRLVFAGT-- 294 (430)
Q Consensus 253 --------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~l~~~~-- 294 (430)
-+.|++.|..+.+.+..++-.....+.+++.- .+ ..++++|+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~ 853 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 853 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence 13577888888887777664344455665542 22 46888876
Q ss_pred --------CCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE-EEEeccCc--
Q 014104 295 --------TAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS-RCVMDIGS-- 362 (430)
Q Consensus 295 --------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~-- 362 (430)
..|.|++|++..++..... ....++|++++.| +|+ |++|- ..+|++|++...+.++ ........
T Consensus 854 ~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~ 929 (1158)
T 3ei3_A 854 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMA 929 (1158)
T ss_dssp CCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCE
T ss_pred cCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEE
Confidence 3578999998744322111 1235789998755 465 44443 4789999998665444 11111111
Q ss_pred -------ceeeeccCCceEEEeecccccCCcccccCC-CCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecC
Q 014104 363 -------ASSSSNKVSGVIERNEGRRLSAGCCIDRIP-KTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 363 -------~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
-.++.|.--..+....... ....+..+. ..+...++++.+ +...++.+..+|.|.+.+.+.
T Consensus 930 ~~l~~~~~~I~vgD~~~Sv~~~~y~~--~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 930 LYLKTKGDFILVGDLMRSVLLLAYKP--MEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEETTEEEEEESSBCEEEEEEET--TTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEeccCCEEEEEEhhheEEEEEEEc--CCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 0122222222222111111 111121111 223457888888 667888899999999998865
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.55 E-value=0.039 Score=48.76 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=115.1
Q ss_pred cceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec----CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---cc
Q 014104 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL----PNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SV 185 (430)
Q Consensus 113 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~ 185 (430)
..+.++.+.++.++.++.++.|.. ..+.|+.-..... +.....+.+..++..++++.++.|.. ..+.++ .+
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEe
Confidence 357788886564444556665544 2333443333221 22344455666666666555664432 223332 11
Q ss_pred ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 186 FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
...... ....+....+ .++..+.+|.+..-+-..++.-..+ ......+..+.+.++..++.++.+|.+.+.+...
T Consensus 158 ~~~~~~---~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 158 VQEAIG---VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN 234 (327)
T ss_dssp ECSCCC---CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred ecCCCc---ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCC
Confidence 111111 1233333222 2444455555544321112222112 2345578888888765566667788887774332
Q ss_pred CceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee---cCCCceEEEEEeeCCCCeEEEEc
Q 014104 264 DQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR---ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 264 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
++.-..+... ....+.++.+.+++..++++. +|.| .+....++.-..+. .....++.+. +.+++ .+++++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~-~~~~~-~~~~~G 310 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKIL-FFSPD-QGFILG 310 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEE-EEETT-EEEEEC
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEE-EECCC-ceEEEc
Confidence 3332222211 223588999998877766654 6656 34444444333333 1235678887 65444 466677
Q ss_pred CCCeEEEEEc
Q 014104 338 IDGVLRVLDQ 347 (430)
Q Consensus 338 ~dg~i~vwd~ 347 (430)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8898777653
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.54 E-value=0.02 Score=49.86 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeEE--eecCCCCeEEEEecC
Q 014104 172 TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSE 243 (430)
Q Consensus 172 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~ 243 (430)
..+..||+.+.+-. .................+..++.|+.+ ..+.+||..+.+-... +......- +++...
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEEC
Confidence 45777887766521 111111111112222233335666644 3588899877653221 11111112 223335
Q ss_pred CCEEEEEeCCC-----eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-------CeEEEEeCCCCceee
Q 014104 244 DQLIISGSSLG-----SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-------GYASCWDLRTMKSLW 311 (430)
Q Consensus 244 ~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~ 311 (430)
+.+++.|+.++ .+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 66677776543 58889988765433221111111122222 266666666542 358899988754322
Q ss_pred --eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 312 --ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 312 --~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
.+....... +++ ..+++.++.|+.+ ..+.+||+.+.+
T Consensus 188 ~~~~p~~r~~~-~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 188 IAEMSTRRSGA-GVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCCSSCCBSC-EEE--EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCCCccccccc-cEE--EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 121111111 222 1256777777654 357788877654
No 313
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.53 E-value=0.032 Score=49.01 Aligned_cols=222 Identities=10% Similarity=0.042 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE-EEe----C-------CeEEEEEcCCCccc-cc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-GLI----G-------TRICIWRRNGLRSV-FP 187 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~----~-------~~i~vwd~~~~~~~-~~ 187 (430)
+++.|+ ..+.+||..+++-.. ...+. .........++..++ ++. + ..+.+||..+.+-. ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 579999999877543 33221 222233445666655 553 1 12778888876521 11
Q ss_pred CCCCceeeeeEEEEcCCceEEEecC--------CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeC-C---
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSS-L--- 253 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~-d--- 253 (430)
..........+....+..++.|+.+ ..+.+||..+.+-. ..+...... .+++...+.+++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCc
Confidence 1111111112222233335566532 45889998876422 112111111 2233335667777765 2
Q ss_pred --CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceee--eeecCCCceEEEE
Q 014104 254 --GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLW--ETRISPNVVYSLQ 324 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~l~ 324 (430)
..+.+||+.+.+-...-.......-.+++. -++++++.|+.++ .+.+||+.+.+-.. .+....... +++
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEE
Confidence 468999998765432211111111112222 2667777777654 58889998764322 111111111 222
Q ss_pred EeeCCCCeEEEEcCC--------------CeEEEEEcCCCceE
Q 014104 325 HLQNDTSTLVVGGID--------------GVLRVLDQNTGEVL 353 (430)
Q Consensus 325 ~~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~ 353 (430)
..+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 241 --~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 241 --SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp --EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred --EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 2256777777653 24678888766433
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.46 E-value=0.02 Score=50.20 Aligned_cols=226 Identities=10% Similarity=0.000 Sum_probs=111.7
Q ss_pred cCCeEEEEeCC----CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEe----C-----CeEEEEEcCCCccc
Q 014104 121 KRGLILTGVGD----KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLI----G-----TRICIWRRNGLRSV 185 (430)
Q Consensus 121 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~----~-----~~i~vwd~~~~~~~ 185 (430)
.+..++.|+.+ ..+.+||..+.+....-..+.. ........++..++ ++. + ..+.+||+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 33455556532 4688999888664433222211 11122233555544 443 2 46888998876521
Q ss_pred -ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC----
Q 014104 186 -FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL---- 253 (430)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d---- 253 (430)
............+....+..++.|+.+ ..+.+||+.+.+-.. .+......- +++...+.+++.|+.+
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCB
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCCCc
Confidence 111111111112222334345555533 468889987764322 111111111 2223356677777654
Q ss_pred -CeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEE
Q 014104 254 -GSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQ 324 (430)
Q Consensus 254 -g~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~ 324 (430)
..+.+||+.+.+-...-...... ...++.+ ++++++.|+.+ ..+.+||+.+.+-.. .+....... +++
T Consensus 183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~ 259 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT 259 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE
T ss_pred CceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEE
Confidence 46889998876543221111111 1222233 66777777654 459999998754322 121111111 222
Q ss_pred EeeCCCCeEEEEcCC-----CeEEEEEcCCCce
Q 014104 325 HLQNDTSTLVVGGID-----GVLRVLDQNTGEV 352 (430)
Q Consensus 325 ~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~ 352 (430)
. .+++.++.|+.+ ..+.+||+.+.+-
T Consensus 260 -~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 260 -V-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp -E-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred -E-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 1 256777777643 4578888876543
No 315
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.43 E-value=0.12 Score=51.55 Aligned_cols=230 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
...|.++.- ++|++-.|..+| +..||-..-+....... ...+..+....++...+++ +..+..||..+.+.....
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~~~ 98 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQPE 98 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEE-TTEEEEEETTTTEECCCS
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEECcc
Confidence 567899887 466777777777 55666432111110001 1234444445555444565 456889998776422111
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-----cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-----MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
......+.++...+..+..++.+ -+..+|..+++.. .+. .....|.++...++..+..|+.+ -+..+|..+
T Consensus 99 -~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~ 174 (758)
T 3ott_A 99 -TDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSN 174 (758)
T ss_dssp -CCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTT
T ss_pred -cCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCC
Confidence 11111223333345557777776 6788898766543 221 12346888887755555556654 577888776
Q ss_pred CceeEEEecCC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 264 DQRVATLRSTD-----CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 264 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++.. .+.... ...|.++...+++..|..|+.. -+..+|..+++...........|.++. ...+|.+.+ |+.
T Consensus 175 ~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWi-gT~ 250 (758)
T 3ott_A 175 GKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLA-LDGNGDLLA-GTD 250 (758)
T ss_dssp TEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEE-ECTTCCEEE-EET
T ss_pred CceE-EecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEE-EcCCCCEEE-EeC
Confidence 6542 222111 1248888888777766666644 488899876643221111234577877 666776554 444
Q ss_pred CCeEEEEEcCCCce
Q 014104 339 DGVLRVLDQNTGEV 352 (430)
Q Consensus 339 dg~i~vwd~~~~~~ 352 (430)
+ -+.+++..+++.
T Consensus 251 ~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 251 N-GLYVYHNDTTPL 263 (758)
T ss_dssp T-EEEEECCTTSCC
T ss_pred C-ceeEEecCCCcE
Confidence 4 478888776543
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.43 E-value=0.065 Score=48.42 Aligned_cols=230 Identities=7% Similarity=0.078 Sum_probs=139.6
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC 210 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (430)
+..|.|-|+.++..+.... -.....-++|..+.++--....+.++|+++.+.+....-.. .++-|.+.++..+.-=
T Consensus 47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e--~VvfWkWis~~~l~lV 122 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALV 122 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE--CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS--CCCEEEEEETTEEEEE
T ss_pred CCeEEEEECCCCCcceecc--cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC--CceEEEecCCCeEEEE
Confidence 3478899988765443222 23344567888888885568999999999987543222111 2466777666633333
Q ss_pred cCCeEEEEECCC-CeeeEEeecCC----CCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 211 EDGTARVFDMYS-RKCSQIIRMHC----APVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 211 ~dg~i~vwd~~~-~~~~~~~~~~~----~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..|+-|++.. ..+.+.+..|. ..|.....+++ ++++..+ -.|.+.+|..+.+ .-+.+++ |...
T Consensus 123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG-haa~ 200 (494)
T 1bpo_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG-HAAS 200 (494)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC-SEEE
T ss_pred cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee-eeee
Confidence 356899999964 35666676553 35556666655 5544332 2478889998753 3455555 5433
Q ss_pred eEEEEEecCC---CEEEEEeC---CCeEEEEeCCCC---ceee-----ee--e--cCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 278 IKTLCYNPCS---RLVFAGTT---AGYASCWDLRTM---KSLW-----ET--R--ISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 278 v~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~~-----~~--~--~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
...+.+..+. ..++.+.. .+.+.|.++... .+.. .+ . ...+-..++. .++.-..++.-+.-
T Consensus 201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq-vs~kygviyviTK~ 279 (494)
T 1bpo_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKY 279 (494)
T ss_dssp EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE-EETTTTEEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE-ecccCCEEEEEecC
Confidence 3333321111 13333332 278888888532 1110 11 1 1123345666 77888888888999
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeee
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSS 367 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 367 (430)
|.|++||++++.++..-+.....+++.+
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~~iF~t~ 307 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGETIFVTA 307 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ceEEEEecccceeeeeecccCCceEEec
Confidence 9999999999999998887666554443
No 317
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.42 E-value=0.1 Score=50.53 Aligned_cols=182 Identities=7% Similarity=-0.014 Sum_probs=102.9
Q ss_pred EEEEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCee-eEEeecCCCCeEEEEe
Q 014104 166 IVGLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSL 241 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~ 241 (430)
++-+....|+..++++.. .............+.+.+.+..|+.+ ...+.|..+++..... ...+.........+++
T Consensus 12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 345566778888887642 22222222222334444445555444 4467888888765432 2223322356788998
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeecCC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
.+ + +++++-...+.|.+.++... ....+..........++++|.+..|+.... .+.|...++............-
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~ 170 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence 85 4 45555567789999998744 333443224456889999997666665543 4677777776332222222233
Q ss_pred CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCC
Q 014104 318 NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~ 349 (430)
.....++ ++++++.|+.+ ...+.|...|+..
T Consensus 171 ~~P~Gla-ld~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 171 YWPNGLT-LDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp SSEEEEE-EETTTTEEEEEETTTCCEEEESSSC
T ss_pred CCCcEEE-EEccCCEEEEEeCCCCeEEEecCCC
Confidence 5678888 88876666544 4567888888863
No 318
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.31 E-value=0.072 Score=46.50 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred CCeEEEEecC-CCEEEEEe-CCCeEEEEeCCCCceeEEEecCC------CCCeEEEEE---ecCCCEEEEEe--------
Q 014104 234 APVTSLSLSE-DQLIISGS-SLGSIAISGLSSDQRVATLRSTD------CTGIKTLCY---NPCSRLVFAGT-------- 294 (430)
Q Consensus 234 ~~i~~~~~~~-~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~---~~~~~~l~~~~-------- 294 (430)
.-..+++|++ +..++.++ ..++|..||...+.......... ...+..+.+ .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3445788885 35555555 78999999987654433321110 114689999 68888777644
Q ss_pred -----CCCeEEEEeCC---CCceeeeeec-------------CCCceEEEEEeeCCCCeEEEEcCC-CeEEEEEcCCCce
Q 014104 295 -----TAGYASCWDLR---TMKSLWETRI-------------SPNVVYSLQHLQNDTSTLVVGGID-GVLRVLDQNTGEV 352 (430)
Q Consensus 295 -----~dg~i~i~d~~---~~~~~~~~~~-------------~~~~v~~l~~~s~~~~~l~s~~~d-g~i~vwd~~~~~~ 352 (430)
.+..|..||+. +++.+..... -......++ ..++|+.-++++.. +.|...+.. |+.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva-vD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA-QDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE-ECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE-ECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 26779999999 7877654431 113477888 99999988888877 888777765 444
Q ss_pred EEEE
Q 014104 353 LSRC 356 (430)
Q Consensus 353 ~~~~ 356 (430)
+..+
T Consensus 171 ~~~~ 174 (334)
T 2p9w_A 171 VSTF 174 (334)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 4433
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0014 Score=57.93 Aligned_cols=111 Identities=8% Similarity=0.000 Sum_probs=74.5
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecC-CCCeEEEEec--C-CCEEEEE--eCCCeEEEEeCCCCceeEEEecC---CCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLS--E-DQLIISG--SSLGSIAISGLSSDQRVATLRST---DCT 276 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~---~~~ 276 (430)
+++++.||.|.-+|..+|+....++.. ..++....-. + +..++.+ +.||.+..+|..+|.....+... ...
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S 92 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS 92 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence 889999999999999999999998754 1233222111 1 2234433 68999999999988665544421 111
Q ss_pred CeEE---EEE-e----cCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 277 GIKT---LCY-N----PCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 277 ~v~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
++.. ..+ . ..+..+++|+.+|.+...|+++|+.+.++...
T Consensus 93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2211 000 0 04557889999999999999999999887643
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.19 E-value=0.059 Score=47.25 Aligned_cols=175 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCcccccCCC-CceeeeeEEEEcCC-ceEEEec----C-------CeEEEEECCCCeeeEEeecCCCCe--
Q 014104 172 TRICIWRRNGLRSVFPSRE-GTFMKGLCMRYFDP-EAVVGCE----D-------GTARVFDMYSRKCSQIIRMHCAPV-- 236 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~----d-------g~i~vwd~~~~~~~~~~~~~~~~i-- 236 (430)
..+..||..+.+-...... .......+....+. .++.|+. + ..+..||..+++-. .+..-..+-
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhc
Confidence 6788888887763221111 11111222333333 3666663 1 23778898876532 111111111
Q ss_pred EEEEecCCCEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-C-----CeEEEE
Q 014104 237 TSLSLSEDQLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-A-----GYASCW 302 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~ 302 (430)
.+++...+.+++.|+.+ ..+.+||..+.+-...-.......-.+++. .+++.++.|+. + ..+.+|
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 170 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVY 170 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEE
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEE
Confidence 12233355666666632 468999998765322111101111112222 36677777765 2 358999
Q ss_pred eCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCCC-----eEEEEEcCCCc
Q 014104 303 DLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 303 d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
|..+.+-.. .+......- +++ ..+++.++.|+.++ .+.+||+.+.+
T Consensus 171 d~~~~~W~~~~~~p~~r~~~-~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 171 DPKKFEWKELAPMQTARSLF-GAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEE--EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eCCCCeEEECCCCCCchhce-EEE--EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 988754221 111111111 122 22667777777543 47777877653
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.17 Score=47.09 Aligned_cols=253 Identities=11% Similarity=0.080 Sum_probs=132.5
Q ss_pred eeEEEEec-CCCEEE-EEe-CCeEEEEEcCCCcccccCCCC--ce--eeeeEE-------EEcCCceEEEecCC------
Q 014104 154 ASLVDFDF-DESKIV-GLI-GTRICIWRRNGLRSVFPSREG--TF--MKGLCM-------RYFDPEAVVGCEDG------ 213 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~~~-~~~i~vwd~~~~~~~~~~~~~--~~--~~~~~~-------~~~~~~l~~~~~dg------ 213 (430)
...++++| ++..|+ +.. .+.|++.|++++........+ .. ...+++ ...+..++++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 34688888 455555 433 356888998887643211111 12 233444 44566566665543
Q ss_pred -eEEEEECCC-Ceee-----EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCC-------CCce-----------
Q 014104 214 -TARVFDMYS-RKCS-----QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLS-------SDQR----------- 266 (430)
Q Consensus 214 -~i~vwd~~~-~~~~-----~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~-------~~~~----------- 266 (430)
.|.+++... +... ..+... .....++++| + .++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366776443 2221 222221 2335678887 3 455566678899999987 5543
Q ss_pred eEE-EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCC--CCcee--eeeecC---C------------CceE-EEE
Q 014104 267 VAT-LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLR--TMKSL--WETRIS---P------------NVVY-SLQ 324 (430)
Q Consensus 267 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~~--~~~~~~---~------------~~v~-~l~ 324 (430)
... +........+.++|+|+|+.|+.+ .....|+.++.. .+... ..+-+. . .... .+.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 122 222133457899999999965544 556788886653 33210 112111 0 1123 232
Q ss_pred Eee-------CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcce----eeeccCCceEEEeecccccCCcccccCCC
Q 014104 325 HLQ-------NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSAS----SSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 325 ~~s-------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
.. +++.+.++-.....|+.++ .+| .+.++.+...... ...|..||.. . ..
T Consensus 380 -vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~--------~--------~~ 440 (496)
T 3kya_A 380 -VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDL--------R--------EV 440 (496)
T ss_dssp -EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEET--------T--------TT
T ss_pred -EccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCc--------h--------hh
Confidence 43 3455555556667777777 345 3455544321000 0001112210 0 00
Q ss_pred CCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCC
Q 014104 394 TIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 394 ~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.-..-..|+++ +..+++=.....||.++++..
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 111245677774 556666667789999988754
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.09 E-value=0.1 Score=45.50 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEec----C-----CeEEEEECCCCeeeE--EeecCCCCeEEE
Q 014104 172 TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE----D-----GTARVFDMYSRKCSQ--IIRMHCAPVTSL 239 (430)
Q Consensus 172 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~ 239 (430)
..+.+||..+.+-. .................+..++.|+. + ..+.+||+.+.+-.. .+......- ++
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EE
Confidence 45778888776521 11111111111222223333555554 2 468889987764321 111111122 22
Q ss_pred EecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 240 SLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 240 ~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
+...+.+++.|+.+ ..+.+||+.+.+-...-...... .-..+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 22355666666643 46889998876543221111111 1222222 66777777654 458899988754
Q ss_pred eee--eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 309 SLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 309 ~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
-.. .+......-..+. + +++.++.|+.+ ..+.+||+.+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCV-L--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEECCCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccceEEE-E--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 321 1111111111222 2 56677777654 457888877653
No 323
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.19 Score=46.85 Aligned_cols=235 Identities=9% Similarity=-0.027 Sum_probs=125.1
Q ss_pred eEEEec--C-CeEEEEeC-CCeEEEEecCCCeeEEeeecC----CceeEEEE-------ecCCCEEE-EEeCC-------
Q 014104 116 DQCRMK--R-GLILTGVG-DKVMRLWSLEGYKCVEEYSLP----NAASLVDF-------DFDESKIV-GLIGT------- 172 (430)
Q Consensus 116 ~~~~~~--~-~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~l~-~~~~~------- 172 (430)
..|+|+ + +.|+.+.. .+.|++.|++++......... .....++| +++++.|+ +...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 356664 2 34444443 467888998887665544332 23667999 99999666 43332
Q ss_pred eEEEEEcCC-Ccccc-----cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECC-------CCee-----------eE
Q 014104 173 RICIWRRNG-LRSVF-----PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-------SRKC-----------SQ 227 (430)
Q Consensus 173 ~i~vwd~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-------~~~~-----------~~ 227 (430)
.+.+++... +.... ..........+++.+.+.. +++-..++.|..+|+. ++.. ..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred eEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 266665443 11110 0000111122334443344 4455567889999987 4543 11
Q ss_pred E-ee-cCCCCeEEEEecCC-CE-EEEEeCCCeEEEEeC--CCCce--eEEEecC--C------------CCCeE-EEEEe
Q 014104 228 I-IR-MHCAPVTSLSLSED-QL-IISGSSLGSIAISGL--SSDQR--VATLRST--D------------CTGIK-TLCYN 284 (430)
Q Consensus 228 ~-~~-~~~~~i~~~~~~~~-~~-l~~~~~dg~i~vwd~--~~~~~--~~~~~~~--~------------~~~v~-~~~~~ 284 (430)
. +. +.......++++|+ +. +++-+....|+.+|. .++.. ...+-+. . -.... .+...
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd 381 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVK 381 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEE
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEc
Confidence 2 21 12344678999976 64 455566788998664 33322 1222221 0 01344 45554
Q ss_pred -------cCCCEEEEEeCCCeEEEEeCCCCceeeeeecC------------------------CCceEEEEEeeCC-CCe
Q 014104 285 -------PCSRLVFAGTTAGYASCWDLRTMKSLWETRIS------------------------PNVVYSLQHLQND-TST 332 (430)
Q Consensus 285 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------~~~v~~l~~~s~~-~~~ 332 (430)
++|.+.++-.....|+.++. ++. +.++-+. -.....++ ++++ |.+
T Consensus 382 ~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~l 458 (496)
T 3kya_A 382 NPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMF 458 (496)
T ss_dssp CTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEE
T ss_pred cccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEE
Confidence 45666666667788999984 453 3333321 02245666 6665 555
Q ss_pred EEEEcCCCeEEEEEcCCCceE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.++=.....|+.++++....+
T Consensus 459 yVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 459 YVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEETTTTEEEEEEECCCC--
T ss_pred EEEeCCCCEEEEEECCCCccc
Confidence 555556667777776644443
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.07 E-value=0.073 Score=47.58 Aligned_cols=142 Identities=13% Similarity=0.009 Sum_probs=66.6
Q ss_pred CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeC------CCeEEEEeC--CCCceeEEEec-CCCC-CeEE
Q 014104 213 GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSS------LGSIAISGL--SSDQRVATLRS-TDCT-GIKT 280 (430)
Q Consensus 213 g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~------dg~i~vwd~--~~~~~~~~~~~-~~~~-~v~~ 280 (430)
..+.+||+.+.+-. ..+......-.+++...+.+++.|+. ...+..||+ .+.+-.. +.. .... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccc
Confidence 57999999876432 22221111112344445666677653 345777877 4433221 111 0111 1111
Q ss_pred EEEecCCCEEEEEeCC----------------------CeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 281 LCYNPCSRLVFAGTTA----------------------GYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
.+...++++++.|+.+ ..+.+||+.+.+- +..+......-.+ ...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~---~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS---LPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE---EEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee---EEeCCEEEEEe
Confidence 1222366777777632 2478899886542 2222222111112 22467777888
Q ss_pred cCCC------eEEEEEcCCCceEEEEEe
Q 014104 337 GIDG------VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 337 ~~dg------~i~vwd~~~~~~~~~~~~ 358 (430)
+.++ .|.++++++++.+.....
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 7542 456668887776655443
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.06 E-value=0.058 Score=56.20 Aligned_cols=231 Identities=8% Similarity=0.087 Sum_probs=131.6
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC 210 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (430)
...|.|-|+.++..+.. .+-..-..-++|..+.++--...++.++|+++...+....-.. .++-|.+.++..+.-=
T Consensus 47 ~~~vvIidl~~~~~~~r--rpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e--~VvfWkWis~~~l~lV 122 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR--RPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALV 122 (1630)
T ss_pred CceEEEEECCCCCCccc--ccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCC--CceEEEecCCCeeEEE
Confidence 34788889887654422 2223334556788888875568899999999876443222212 3567777777733333
Q ss_pred cCCeEEEEECCC-CeeeEEeecC----CCCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 211 EDGTARVFDMYS-RKCSQIIRMH----CAPVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 211 ~dg~i~vwd~~~-~~~~~~~~~~----~~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..|+-|++.. ..+.+.+..| ...|..-..+++ ++++..+ -.|.+.+|..+.+. -+.+++ |...
T Consensus 123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg-ha~~ 200 (1630)
T 1xi4_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAAS 200 (1630)
T ss_pred cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH-hHhh
Confidence 345899999964 2455555544 335555566655 4444322 35788899876433 233444 3332
Q ss_pred eEEEEEe--cCCCEEEE-Ee---CCCeEEEEeCCCC---ceeee-------ee--cCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 278 IKTLCYN--PCSRLVFA-GT---TAGYASCWDLRTM---KSLWE-------TR--ISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 278 v~~~~~~--~~~~~l~~-~~---~dg~i~i~d~~~~---~~~~~-------~~--~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
...+... +....|++ +. ..+.+.|-++... .+... +. ...+-..++. .++.-..+..-+.-
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~-vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKY 279 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE-eccccCEEEEEecC
Confidence 2222221 11112222 11 1267888887432 11110 00 1122334555 67777788888889
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
|.|+++|+.+|.++..-+.....+++.+.
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAP 308 (1630)
T ss_pred ceEEEEecccchhhhhccccCCceEEecc
Confidence 99999999999998777665555544443
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.02 E-value=0.15 Score=44.64 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=107.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEe----CC-------eEEEEEcCCCccc-cc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLI----GT-------RICIWRRNGLRSV-FP 187 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~----~~-------~i~vwd~~~~~~~-~~ 187 (430)
.++.|+. .+.+||..+++... ...+ ..........++..++ |+. ++ .+.+||..+.+-. ..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 48899998877544 2221 1122233445666555 542 11 2777888776521 11
Q ss_pred CCCCceeeeeEEEEcCCceEEEecC-------CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeC------
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCED-------GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSS------ 252 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~------ 252 (430)
..........+....+..++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+.
T Consensus 95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCB
T ss_pred CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCc
Confidence 1111111112222334446666653 3588899877643221 1110011 1222335566666653
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQH 325 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~ 325 (430)
-..+.+||+.+.+-...-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-.. .+....... +++
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~- 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV- 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-
Confidence 24689999987754332111111111222222 66777777643 357789988754221 121111111 222
Q ss_pred eeCCCCeEEEEcCC--------------CeEEEEEcCCCceE
Q 014104 326 LQNDTSTLVVGGID--------------GVLRVLDQNTGEVL 353 (430)
Q Consensus 326 ~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~ 353 (430)
..+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 251 -~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 251 -SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp -EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred -EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 2356777776643 35778888766543
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.98 E-value=0.35 Score=48.18 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=104.6
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.+.++.-..+|..-+++.+| +..||-...+............+.++..+. ..|..|+.+| +..||..+.+.......
T Consensus 23 ~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETD 100 (758)
T ss_dssp CEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCC
T ss_pred eEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccC
Confidence 44445555566555566554 556664322111110111112234544444 3477887765 78899877654321111
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR----STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
....|.++... +..+..++.+ -+..+|..+++.. .+. ......|.++...++|.+.+ |+.+| +..||..++
T Consensus 101 ~~~~i~~i~~~-~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 101 FPTDVRTMALQ-GDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG 175 (758)
T ss_dssp CCSCEEEEEEE-TTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT
T ss_pred CCceEEEEEec-CCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC
Confidence 22357776553 4456666665 6888998765543 331 11234688888887777555 55555 888888765
Q ss_pred ceeee-eec----CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 308 KSLWE-TRI----SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~-~~~----~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+.... ... ....|.++. ..+++..|..|+. +-+..+|..+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~i~~i~-~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 176 KFEGIPLPVHSSQSNLFVNSLL-EDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp EEEEECCCCCTTCSSCCEEEEE-EETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred ceEEecCCCccccccceeEEEE-EECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 43211 111 113477776 6666665555553 4588899876653
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.93 E-value=0.19 Score=44.84 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCe-EEEEEecCCCEEEEEeC------CCeEEEEeC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGI-KTLCYNPCSRLVFAGTT------AGYASCWDL 304 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------dg~i~i~d~ 304 (430)
..+.+||..+.+-...-.......- .+++.. ++++++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 5799999987764433221111111 233332 5666666653 235777876
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.79 E-value=0.13 Score=53.69 Aligned_cols=227 Identities=13% Similarity=0.172 Sum_probs=135.6
Q ss_pred CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCCc-eeeeeE
Q 014104 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREGT-FMKGLC 198 (430)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~~-~~~~~~ 198 (430)
..+++--...++.|+|+++...++.+..++.+....|- +.+.|+--++..|..|++.+.. .++..+..- ...++.
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi-s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIin 155 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec-CCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEE
Confidence 34444445789999999998889888887776666664 3445556678899999997533 233333211 122233
Q ss_pred EEEc--CCc-eEEEe------cCCeEEEEECCCCeeeEEeecCCCCeEEEEec--C--CCEEEEEeC---CCeEEEEeCC
Q 014104 199 MRYF--DPE-AVVGC------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--E--DQLIISGSS---LGSIAISGLS 262 (430)
Q Consensus 199 ~~~~--~~~-l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~--~--~~~l~~~~~---dg~i~vwd~~ 262 (430)
...+ ... +++|- -.|.+.+|..+. +.-+.+.||.+....+... + ...+..+.. .+.+.+-++.
T Consensus 156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~ 234 (1630)
T 1xi4_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (1630)
T ss_pred eeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence 3333 233 33332 358889998754 3445677776665555553 1 123333322 2688888885
Q ss_pred CC---ceeE------EEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 263 SD---QRVA------TLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 263 ~~---~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
.. .... .+.. ....-..++..++.-..+..-+.-|.|.+||+.++.++..-+.....|...+...+.+.
T Consensus 235 ~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g 314 (1630)
T 1xi4_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (1630)
T ss_pred CCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCc
Confidence 43 1111 0110 01223456777777778888889999999999999998776666667766652223333
Q ss_pred eEEEEcCCCeEEEEEcCCCce
Q 014104 332 TLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~ 352 (430)
++.....|.|.--.+.....
T Consensus 315 -~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 315 -IIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred -eEEEcCCceEEEEEEccchh
Confidence 44444677776666654443
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.78 E-value=0.27 Score=43.87 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=114.4
Q ss_pred eEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCee--EEeee----cCCceeEEEEecC---CCEEE-EEe-C
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKC--VEEYS----LPNAASLVDFDFD---ESKIV-GLI-G 171 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~----~~~~~~~~~~~~~---~~~l~-~~~-~ 171 (430)
.+..+...-..-..++| ++|.++.+..+|.|.+++ +++. +..+. ......-++++|+ +..|+ +.. .
T Consensus 22 ~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CEEEEECCCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 44445444445678888 677666677789999998 3332 22221 1245566999998 55555 333 2
Q ss_pred -----CeEEEEEcCCCc-----cccc-C----CCCceeeeeEEEEcCCceEEEec--------------CCeEEEEECCC
Q 014104 172 -----TRICIWRRNGLR-----SVFP-S----REGTFMKGLCMRYFDPEAVVGCE--------------DGTARVFDMYS 222 (430)
Q Consensus 172 -----~~i~vwd~~~~~-----~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~--------------dg~i~vwd~~~ 222 (430)
+.|..++..... .++. . ...|....+.+.+++. |+.+.. .|.|.-++...
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 678888877531 1221 1 1123333455555553 333321 25666666542
Q ss_pred C------------eeeEEe-ecCCCCeEEEEecC-CCEEEEEe-CCCe--------EEEEeCCCCc--------------
Q 014104 223 R------------KCSQII-RMHCAPVTSLSLSE-DQLIISGS-SLGS--------IAISGLSSDQ-------------- 265 (430)
Q Consensus 223 ~------------~~~~~~-~~~~~~i~~~~~~~-~~~l~~~~-~dg~--------i~vwd~~~~~-------------- 265 (430)
. .....+ .++ .....++|+| +..|.++. .... |.+. ..+.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCT
T ss_pred CCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCC
Confidence 0 000111 122 2245678887 43344332 2222 3322 2221
Q ss_pred ----eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce------eeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 266 ----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS------LWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 266 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
++..+. .......++| .+|.++++....+.|...++..... ...+......+..++ +.|||.+.++
T Consensus 256 ~~~~p~~~~~--~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~-~~pdG~lyv~ 331 (352)
T 2ism_A 256 RYRDPLYFWP--QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQ-VGPDGALYVT 331 (352)
T ss_dssp TSCCCSEECT--TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEE-ECTTSCEEEE
T ss_pred CCcCCeEecC--CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEE-ECCCCcEEEE
Confidence 122221 2234567777 4677666666667788877764331 112222235677887 8888876655
Q ss_pred Ec
Q 014104 336 GG 337 (430)
Q Consensus 336 ~~ 337 (430)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.66 E-value=0.29 Score=44.25 Aligned_cols=154 Identities=9% Similarity=0.038 Sum_probs=96.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-----CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLC 198 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (430)
.++.+- ++.||.-++......+.+..+ ..+..+.++|+|++|+...+..|.|..+..+....... +
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~-~------- 104 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDV-S------- 104 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCH-H-------
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccc-c-------
Confidence 444333 468888887744444444443 24566999999999998888899998877432111000 0
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC----CCEEEEEeCCCeEEEEeCCCCc--eeEEEec
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE----DQLIISGSSLGSIAISGLSSDQ--RVATLRS 272 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~ 272 (430)
+ ..--.++-|.+..-+ .....+|..+.|+| +..+++-..|+.|++||+.... +. .++.
T Consensus 105 -------~---~~~~q~~ty~l~~~~-----~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k 168 (452)
T 3pbp_A 105 -------I---QDAFQIFHYSIDEEE-----VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNK 168 (452)
T ss_dssp -------H---HHTTEEEEEEGGGCC-------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESC
T ss_pred -------c---ccccceeEEEcCCcc-----cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhc
Confidence 0 000124445553211 11367899999998 3689999999999999998522 12 2221
Q ss_pred --------CCCCCeEEEEEecCCCEEEEEe--CCCeEEEE
Q 014104 273 --------TDCTGIKTLCYNPCSRLVFAGT--TAGYASCW 302 (430)
Q Consensus 273 --------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~ 302 (430)
.....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 169 ~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 PNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1224789999999887777755 77887665
No 332
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.56 E-value=0.001 Score=64.56 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=29.4
Q ss_pred CCCccCCcHHHHHHHhcCCC-hhhhHHHHhhhHHHHHh
Q 014104 21 RATIESLNGDIICMIFSSLG-FFDLVRCSAVCKSWNAI 57 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~-~~~l~~~~~v~~~w~~~ 57 (430)
.+.+..||+|++.+||+||+ .+++.++++|||+|+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 36788999999999999999 99999999999999988
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.55 E-value=0.35 Score=42.25 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=64.3
Q ss_pred EEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-------CeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 215 ARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 215 i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
+..||..+.+-... +...... .+++...+.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E
T ss_pred EEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E
Confidence 77889877643221 1111111 22333355666677653 358889988765433211101111112222 3
Q ss_pred CCCEEEEEeC------CCeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 286 CSRLVFAGTT------AGYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 286 ~~~~l~~~~~------dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
++++++.|+. -..+.+||+.+.+-.. .+...... .+++ . -+++.++.|+.+ ..+.+||+.+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVA-I-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-E-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEE-E-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 6677677654 2358999998764222 11111111 1222 1 256666666643 346677776553
No 334
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.17 E-value=0.65 Score=41.33 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=72.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCccccc-C----CCCceeeeeEEEEc---CCceEEEecC------CeEEE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP-S----REGTFMKGLCMRYF---DPEAVVGCED------GTARV 217 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~-~----~~~~~~~~~~~~~~---~~~l~~~~~d------g~i~v 217 (430)
.....+++.++++.+++...+.|.+++ ......+. . ........+++.++ +..++++... +.|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 456679999999987788889999998 33221111 1 11112223444333 2345554432 57888
Q ss_pred EECCCCe-----ee-EEee---cCCCCeEEEEecCCCEEEEEe-C-------------CCeEEEEeCCCC----------
Q 014104 218 FDMYSRK-----CS-QIIR---MHCAPVTSLSLSEDQLIISGS-S-------------LGSIAISGLSSD---------- 264 (430)
Q Consensus 218 wd~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~l~~~~-~-------------dg~i~vwd~~~~---------- 264 (430)
++...+. .+ ..+. ........++|.|+..|+.+. . .|.|.-+|....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 8876431 11 1132 111123578998774444432 1 256666665420
Q ss_pred --ceeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 014104 265 --QRVATLRSTDCTGIKTLCYNP-CSRLVFAG 293 (430)
Q Consensus 265 --~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 293 (430)
.....+...+ .....++|+| +|+++++-
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 0111111112 2367789999 66655543
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.98 E-value=0.8 Score=40.67 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=78.7
Q ss_pred CCeEEEEECCCC--e--eeEEeecC-CCCeEEEEecCC-CEEEEEe-----------------CCCeEEEEeCCCCceeE
Q 014104 212 DGTARVFDMYSR--K--CSQIIRMH-CAPVTSLSLSED-QLIISGS-----------------SLGSIAISGLSSDQRVA 268 (430)
Q Consensus 212 dg~i~vwd~~~~--~--~~~~~~~~-~~~i~~~~~~~~-~~l~~~~-----------------~dg~i~vwd~~~~~~~~ 268 (430)
+.+|.+|++... . .+..+.+. -...+.+.+.++ .+.++.. ..|.|..+|.. +. .
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-R 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-E
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-E
Confidence 456777765443 2 22333322 235688888865 4444432 12456666653 32 2
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeC-CCCeEEEEcCC-CeE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQN-DTSTLVVGGID-GVL 342 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~d-g~i 342 (430)
.+.. .-...+.++|+||++.|+.+. ..+.|..|++.. ++. ...+. ..+..-.++ +.+ +|.+.+++..+ +.|
T Consensus 215 ~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~-vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 215 VVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNIS-VDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp EEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEE-ECTTTCCEEEEEESCHHHH
T ss_pred Eeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEE-EeCCCCcEEEEecCCceEE
Confidence 2221 223678999999998877654 568899999863 322 12232 235566777 888 58877766544 355
Q ss_pred EEEEcC--CCceEEEEE
Q 014104 343 RVLDQN--TGEVLSRCV 357 (430)
Q Consensus 343 ~vwd~~--~~~~~~~~~ 357 (430)
..||.. .+..+..+.
T Consensus 292 ~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 292 FFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp HSCCTTSCCCEEEEEEE
T ss_pred EEECCCCCCCCEEEEEE
Confidence 555544 244444444
No 336
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.50 E-value=1.2 Score=39.43 Aligned_cols=135 Identities=7% Similarity=0.129 Sum_probs=81.0
Q ss_pred cCCeEEEEECCCC--eee-EEeec-----CCCCeEEEEecC---CC--EEEEEeC--CCeEEEEeCCCCc----eeEEEe
Q 014104 211 EDGTARVFDMYSR--KCS-QIIRM-----HCAPVTSLSLSE---DQ--LIISGSS--LGSIAISGLSSDQ----RVATLR 271 (430)
Q Consensus 211 ~dg~i~vwd~~~~--~~~-~~~~~-----~~~~i~~~~~~~---~~--~l~~~~~--dg~i~vwd~~~~~----~~~~~~ 271 (430)
.+|.|.++|..+. +.. ..+.+ .......+.+.+ +. ++++-.. +.+|.+|++..+. .+.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6889999998732 211 12222 123556677643 32 3444333 4678887765432 234454
Q ss_pred cCCCCCeEEEEEecCCCEEEEEe-----------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGT-----------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
+..-.....+.+.++|.+.++.. ..|.|+-+|.. + +..+...-..-+.++ ++||++.|+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia-~spDg~~lY 236 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGIN-ISPDGKYVY 236 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEE-ECTTSSEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcce-ECCCCCEEE
Confidence 43344789999999999877754 12456666653 2 222222234568888 999998776
Q ss_pred EE-cCCCeEEEEEcCC
Q 014104 335 VG-GIDGVLRVLDQNT 349 (430)
Q Consensus 335 s~-~~dg~i~vwd~~~ 349 (430)
.+ +..+.|..|++..
T Consensus 237 vadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 237 IAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEGGGTEEEEEEECT
T ss_pred EEeCCCCeEEEEEECC
Confidence 55 4678999999863
No 337
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.48 E-value=0.0056 Score=59.26 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=31.4
Q ss_pred cCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHh
Q 014104 25 ESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAI 57 (430)
Q Consensus 25 ~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~ 57 (430)
..||+|++.+||+|| +++++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 469999999999999 899999999999999987
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.24 E-value=1.7 Score=39.37 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=88.9
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecC----CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-----------
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----------- 265 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----------- 265 (430)
.+..++.+- ++.||.-++.....-+.++.. -+.|..+..+|+ .+++.. .+..|.|-.+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccc
Confidence 344455444 468888888754444455432 236788999986 555554 46788888876322
Q ss_pred -eeEEEecC-----CCCCeEEEEEecCC---CEEEEEeCCCeEEEEeCCCC--ceeeeee---------cCCCceEEEEE
Q 014104 266 -RVATLRST-----DCTGIKTLCYNPCS---RLVFAGTTAGYASCWDLRTM--KSLWETR---------ISPNVVYSLQH 325 (430)
Q Consensus 266 -~~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~v~~l~~ 325 (430)
..+.+.-+ ...+|..+.|+|-+ ..|++-..|+.|++||+... ++. .+. .....|.+++
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~- 186 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE- 186 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE-
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE-
Confidence 12233321 24579999999964 58999999999999999852 222 221 1224577887
Q ss_pred eeCCCCeEEEEc--CCCeEEEEE
Q 014104 326 LQNDTSTLVVGG--IDGVLRVLD 346 (430)
Q Consensus 326 ~s~~~~~l~s~~--~dg~i~vwd 346 (430)
|+.++-.|...+ ..|.|+-.-
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEES
T ss_pred EcCCCcEEEEEecCCCCCEEEEC
Confidence 888776665544 677776543
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.18 E-value=2.7 Score=41.34 Aligned_cols=147 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred CceEEEecC----CeEEEEECCCCeeeEEe-e-------cCCCCeEEEEec-CCCEEEEEeCC------CeEEEEeCCCC
Q 014104 204 PEAVVGCED----GTARVFDMYSRKCSQII-R-------MHCAPVTSLSLS-EDQLIISGSSL------GSIAISGLSSD 264 (430)
Q Consensus 204 ~~l~~~~~d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~ 264 (430)
..++.|+.+ ..+.+||..+++-...- . .....-..+.+. .+.+++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 335556543 46888998776532221 1 111122333333 55677777643 35788998876
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeee-----eecCCCceEEEEEeeCC-CCeEEEE
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASCWDLRTMKSLWE-----TRISPNVVYSLQHLQND-TSTLVVG 336 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~l~~~s~~-~~~l~s~ 336 (430)
+-...-.......-.+++.-.+++.++.|+.++ .+.+||..+.+-... .......-..+. +..+ ++.++.|
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v-~~~~~~~iyv~G 557 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE-FDPVSKQGIILG 557 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE-EETTTTEEEEEC
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE-EeCCCCEEEEEC
Confidence 533221110111112233324788888887654 689999987543211 111111122233 4444 5666667
Q ss_pred cC--C-----CeEEEEEcCCCc
Q 014104 337 GI--D-----GVLRVLDQNTGE 351 (430)
Q Consensus 337 ~~--d-----g~i~vwd~~~~~ 351 (430)
+. + +.+.+||+.+..
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTC
T ss_pred CcCCCCCeeeCcEEEEEccCCc
Confidence 65 2 458888887766
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.98 E-value=4 Score=40.08 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=96.5
Q ss_pred cCCCEEE-EEe----CCeEEEEEcCCCccc-cc-C-----CCCceeeeeEEEE--cCCceEEEecC------CeEEEEEC
Q 014104 161 FDESKIV-GLI----GTRICIWRRNGLRSV-FP-S-----REGTFMKGLCMRY--FDPEAVVGCED------GTARVFDM 220 (430)
Q Consensus 161 ~~~~~l~-~~~----~~~i~vwd~~~~~~~-~~-~-----~~~~~~~~~~~~~--~~~~l~~~~~d------g~i~vwd~ 220 (430)
.++..++ |+. -..+.+||..+.+-. .. . .........+... .+..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4555555 443 256888998876521 11 1 1111111122233 33346666643 35788998
Q ss_pred CCCeee--EEeecCCCCeEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEEe---cC-CCCCeEEEEEecC-CCEEE
Q 014104 221 YSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSSLG--SIAISGLSSDQRVATLR---ST-DCTGIKTLCYNPC-SRLVF 291 (430)
Q Consensus 221 ~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~-~~~l~ 291 (430)
.+.+-. ..+......-.++.+..+.+++.|+.++ .+.+||..+.+-...-. .. ......++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775422 2222111222233333567788887654 79999998765432211 00 1112334555555 66777
Q ss_pred EEeC--C-----CeEEEEeCCCCce-----eeeeec---CCCceEEEEEeeCCCCeEEEEcC--------CCeEEEEEcC
Q 014104 292 AGTT--A-----GYASCWDLRTMKS-----LWETRI---SPNVVYSLQHLQNDTSTLVVGGI--------DGVLRVLDQN 348 (430)
Q Consensus 292 ~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~v~~l~~~s~~~~~l~s~~~--------dg~i~vwd~~ 348 (430)
.|+. + ..+.+||+.+.+- -..+.. ....-.++. ...+++.++.|+. ...|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4589999987761 111111 110111222 2223677777764 3458888887
Q ss_pred CCce
Q 014104 349 TGEV 352 (430)
Q Consensus 349 ~~~~ 352 (430)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 6643
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.96 E-value=4.2 Score=38.23 Aligned_cols=84 Identities=6% Similarity=-0.031 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce-------------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 276 TGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS-------------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-------------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
.....+.++|||+++++++ -+.++.++|++.... ..+.+.. -.....+ |.++|....|---|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~-Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTT-FDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEE-ECSSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEE-ECCCCceEeeeeecce
Confidence 3567789999999988765 477899999985211 2233322 2344556 9999965566668999
Q ss_pred EEEEEcCCC----------ceEEEEEeccC
Q 014104 342 LRVLDQNTG----------EVLSRCVMDIG 361 (430)
Q Consensus 342 i~vwd~~~~----------~~~~~~~~~~~ 361 (430)
|.-|++... ..+..+..|-+
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq 430 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ 430 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC
Confidence 999999753 46777776544
No 342
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.61 E-value=3.7 Score=36.43 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=120.6
Q ss_pred CEeEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCe-eEEeee----cCCceeEEEEecC---CCEEE-EEe-
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYK-CVEEYS----LPNAASLVDFDFD---ESKIV-GLI- 170 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~----~~~~~~~~~~~~~---~~~l~-~~~- 170 (430)
...+..+...-.....+++ +++.|+.+..+|.|.++|. +++ .+..+. ......-++++|+ +..|+ +..
T Consensus 18 ~~~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 18 KFKISEVASDLEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CEEEEEEECSCSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CeEEEEEeCCCCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 3455566554455678888 6777777788899999974 444 222221 2244566899997 55554 433
Q ss_pred ---C----CeEEEEEcCCC------c-cccc---CCCCceeeeeEEEEcCCceEEEec-------------CCeEEEEEC
Q 014104 171 ---G----TRICIWRRNGL------R-SVFP---SREGTFMKGLCMRYFDPEAVVGCE-------------DGTARVFDM 220 (430)
Q Consensus 171 ---~----~~i~vwd~~~~------~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~vwd~ 220 (430)
+ +.|..++.+.. . .++. ....|....+.+.+++..+++.+. .|.|.-++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 2 56778887654 1 1111 111222333555555543333221 245655555
Q ss_pred CCCe----------eeEEeecCCCCeEEEEecC-CCEEEEEeCCC----eEEEEeCCC--------C--------ceeEE
Q 014104 221 YSRK----------CSQIIRMHCAPVTSLSLSE-DQLIISGSSLG----SIAISGLSS--------D--------QRVAT 269 (430)
Q Consensus 221 ~~~~----------~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg----~i~vwd~~~--------~--------~~~~~ 269 (430)
. ++ .+. ..++. ....++|+| +..|.++.... .|.+..... + .++..
T Consensus 177 d-G~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 177 E-GRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp T-SCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred C-CCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 3 22 111 12232 245788887 44444433221 233322100 0 12222
Q ss_pred EecCCCCCeEEEEEe-------cCCCEEEEEeCCCeEEEEeCCCC-cee--eeee-cCCCceEEEEEeeCCCCeEEEEc
Q 014104 270 LRSTDCTGIKTLCYN-------PCSRLVFAGTTAGYASCWDLRTM-KSL--WETR-ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~-~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+.. .......++|. .+|.++++....+.|...++... +.. ..+. .....+..++ +.|||.+.++..
T Consensus 254 ~~~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~-~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGS-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV-IDDDGGILISTS 330 (354)
T ss_dssp CTT-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE-ECTTSCEEEEEC
T ss_pred cCC-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEE-ECCCCcEEEEEe
Confidence 211 22357788883 56777777667778888888753 222 1222 2235678888 889887665553
No 343
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=92.74 E-value=0.078 Score=36.46 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=38.7
Q ss_pred CCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC-CCCCCCchHHHHHHHHcccc
Q 014104 26 SLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF-SNTSGSSMRLHLEELAMKHH 94 (430)
Q Consensus 26 ~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (430)
..|++++.-||...+|..|.+....|.. .+-..+.||+.+|.+.++. .+....+|+..+..+.....
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~~ere 79 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDARE 79 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999988763 3445689999999999864 34477778877766655443
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.59 E-value=1.5 Score=35.84 Aligned_cols=106 Identities=8% Similarity=-0.082 Sum_probs=64.1
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQR------VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
..+..++|+|+..|.+. .+|.+.-.+..+... -..+-..--....++.|+|+|.+.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 36779999998556666 778877777655221 12221101112578999999987777 5699988876432
Q ss_pred ceee-----ee--ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 308 KSLW-----ET--RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 308 ~~~~-----~~--~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..-. +. ...-..+..+. +.|+|.+-+.. |+.++-+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lf-f~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLF-FHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEE-ECTTSCEEEEE--TTEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEE-ECCCceEEEEe--CCcEEec
Confidence 1110 11 11114567776 99999866655 7775433
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.44 E-value=4.6 Score=34.43 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=106.7
Q ss_pred eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
+..+.......+.-. ||.|..|-....-.+..-......|..++......++. . ||.|..|-....-.+.. +....
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~ 101 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV-PAEAR 101 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC-CGGGS
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC-CcccC
Confidence 344444444433335 99999997543221111111223577777765545555 4 89999998653222111 11123
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-Cc---
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-GE--- 351 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-~~--- 351 (430)
..|..++... .+.+.-. ||.|+.|-....-.+..-......|..++ .. ....+.-. ||.|+.|-... ++
T Consensus 102 ~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~-~G--~~~~~~l~-~G~v~~wG~n~~gqlg~ 174 (282)
T 3qhy_B 102 SGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD-GG--VYTALAVK-NGGVIAWGDNYFGQTTV 174 (282)
T ss_dssp SSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE-EC--SSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred CCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE-cc--cCEEEEEE-CCEEEEecCCCCCCCCC
Confidence 3677777654 3444445 89999997654221211111224566665 32 22333334 79999996543 11
Q ss_pred ------eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 352 ------VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 352 ------~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+..+..... ..++- .||.++.|-......-. .+..-...|..|+......+.-. ||.|..|-...
T Consensus 175 p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT----VPTEALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC----CCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC----CCcccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 2333332222 22223 57888766433221110 00011236888888655544445 99999996543
No 346
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.08 E-value=11 Score=33.19 Aligned_cols=139 Identities=10% Similarity=-0.024 Sum_probs=71.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC-----CCCceeeeeEEEEc---CCceEEEec----C----CeE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-----REGTFMKGLCMRYF---DPEAVVGCE----D----GTA 215 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~l~~~~~----d----g~i 215 (430)
.....+++.++++.+++..++.|.+++.+.. ..+.. ........+++.+. +..|+++.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4567789999999777888899999974433 22111 11111223344333 234555443 2 567
Q ss_pred EEEECCCC-------eee-EEeecC-CCCeEEEEecCC-CEEEEEeC-------------CCeEEEEeCCCCc-------
Q 014104 216 RVFDMYSR-------KCS-QIIRMH-CAPVTSLSLSED-QLIISGSS-------------LGSIAISGLSSDQ------- 265 (430)
Q Consensus 216 ~vwd~~~~-------~~~-~~~~~~-~~~i~~~~~~~~-~~l~~~~~-------------dg~i~vwd~~~~~------- 265 (430)
..++.... +.+ ..+... ......++|.|+ .+.++.+. .|.|.-+|.. ++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCC
Confidence 77776543 111 112211 112356889877 44443222 2466666654 22
Q ss_pred -eeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 014104 266 -RVATLRSTDCTGIKTLCYNP-CSRLVFAG 293 (430)
Q Consensus 266 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 293 (430)
....+...+. ....++|+| +|+++++-
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 0111211132 456899999 66655543
No 347
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.88 E-value=14 Score=32.64 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=120.2
Q ss_pred eEEEEeccccceeEEEe-cCCe-EEEEeCCCeEEEEecCCCeeEEeee--------cCCceeEEEEecC---CCEEE-EE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGL-ILTGVGDKVMRLWSLEGYKCVEEYS--------LPNAASLVDFDFD---ESKIV-GL 169 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~l~-~~ 169 (430)
.+..+...-.....++| ++|. ++.+...|.|++++... .....+. .......++++|+ +..|. +.
T Consensus 9 ~~~~va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 9 NVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp EEEEEEEEESSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 33344333345578888 6676 88888899999998543 3221111 1234456899985 55554 32
Q ss_pred -e-------CCeEEEEEcCCC-------cccccCC-----CCceeeeeEEEEcCCceEEEec-------------CCeEE
Q 014104 170 -I-------GTRICIWRRNGL-------RSVFPSR-----EGTFMKGLCMRYFDPEAVVGCE-------------DGTAR 216 (430)
Q Consensus 170 -~-------~~~i~vwd~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~ 216 (430)
. ...|..++.+.. +.++... ..|....+.+.+++...++.+. .|.|.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence 2 235666766532 1122111 1233344566555533333222 24677
Q ss_pred EEECCCCe------------eeEEe-ecCCCCeEEEEecC-CCEEEEEeCC--CeEEEEeCCCCc---------------
Q 014104 217 VFDMYSRK------------CSQII-RMHCAPVTSLSLSE-DQLIISGSSL--GSIAISGLSSDQ--------------- 265 (430)
Q Consensus 217 vwd~~~~~------------~~~~~-~~~~~~i~~~~~~~-~~~l~~~~~d--g~i~vwd~~~~~--------------- 265 (430)
-+|....- ....+ .++ .....++|+| +..|.++... +.=.|.-+..+.
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 77764220 11111 122 2357888987 5555554322 111222221111
Q ss_pred ----------------eeEEEecCCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEeCCCCceeee--e-ecCCCc
Q 014104 266 ----------------RVATLRSTDCTGIKTLCYNP-------CSRLVFAGTTAGYASCWDLRTMKSLWE--T-RISPNV 319 (430)
Q Consensus 266 ----------------~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~ 319 (430)
++..+. +...+..+.|.+ +|+++++....+.|...++..++.... + ......
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 324 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWK--DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQR 324 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEES--SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCC
T ss_pred CccCcccCCCCCCccCCeEEeC--CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCc
Confidence 111222 223567788863 466777776778888888876544322 1 122346
Q ss_pred eEEEEEeeCCCCeEEEEc-CCCeE
Q 014104 320 VYSLQHLQNDTSTLVVGG-IDGVL 342 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~-~dg~i 342 (430)
+..++ +.|||.+.++.. .+|.|
T Consensus 325 p~~v~-~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 325 IRDVR-TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEE-ECTTSCEEEEECSTTEEE
T ss_pred eeEEE-ECCCCcEEEEEeCCCCEE
Confidence 88888 899998655433 34433
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.82 E-value=12 Score=31.84 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=106.7
Q ss_pred ceeEEEecCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-ccCCC
Q 014104 114 GVDQCRMKRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSRE 190 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~ 190 (430)
.|..++.-.. .++. . ||.|..|-.... ++-........+..++.. ....++-.+|.+..|-.+..-++ .....
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 4666666444 3333 4 899999965432 211101111222233332 33333114899999987643211 11100
Q ss_pred CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 014104 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL 270 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 270 (430)
. ..+..+.......+.-. ||.|+.|-....-.+..-......|..++......++. . ||.|..|-......+. .
T Consensus 101 ~--~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg-~ 174 (282)
T 3qhy_B 101 R--SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQTT-V 174 (282)
T ss_dssp S--SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTSTTS-C
T ss_pred C--CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCCCC-C
Confidence 1 12344555555544445 99999997543221111111234577776654433443 3 7999999765422211 1
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+......|..++... .+.+.- .||.|+.|-....-.+..-......|..++ ... ...+.-. ||.|+.|-...
T Consensus 175 p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~-~G~--~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIA-SGE--WYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp CGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEE-ECS--SCEEEEE-TTEEEEESTTC
T ss_pred ceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEE-cCC--CEEEEEE-CCEEEEecCCC
Confidence 111223577776643 333333 589999997654221111111123466665 333 2233333 89999996553
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.81 E-value=17 Score=33.50 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=34.7
Q ss_pred CCeEEEEecC----CCEEEEEeC-------------CCeEEEEeCCCC-------ceeE-EEecCCCCCeEEEEEecCCC
Q 014104 234 APVTSLSLSE----DQLIISGSS-------------LGSIAISGLSSD-------QRVA-TLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 234 ~~i~~~~~~~----~~~l~~~~~-------------dg~i~vwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~ 288 (430)
.....|+++| +..|+.+.. ...|.-++...+ +.+. .+..........|+|.|+|.
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 4567899997 455544432 235666655322 1111 22221123578999999998
Q ss_pred EEEEEe
Q 014104 289 LVFAGT 294 (430)
Q Consensus 289 ~l~~~~ 294 (430)
+.++.+
T Consensus 157 Lyv~~G 162 (454)
T 1cru_A 157 IYYTIG 162 (454)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777654
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.92 E-value=19 Score=33.15 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCeEEEEecCCCEEEEEeCCC-eEEEEeCCCCcee--EEEecC-----CCCCeEEEEEecC---CCEEEEEeC-------
Q 014104 234 APVTSLSLSEDQLIISGSSLG-SIAISGLSSDQRV--ATLRST-----DCTGIKTLCYNPC---SRLVFAGTT------- 295 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~--~~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~------- 295 (430)
...+.|+|.|+..++.+...+ .|++++..+++.. ..+... .......|+|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999874455555554 7998887655432 222211 2346789999995 555554432
Q ss_pred ------CCeEEEEeCCCC-------ceeee-eec-CCCceEEEEEeeCCCCeEEEEc
Q 014104 296 ------AGYASCWDLRTM-------KSLWE-TRI-SPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 296 ------dg~i~i~d~~~~-------~~~~~-~~~-~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
...|.-|+...+ +.+.. +.. .......|+ |.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~-f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLV-IGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEE-ECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEe-ECCCCeEEEEEC
Confidence 234666655321 11211 221 113467788 999998777654
No 351
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.32 E-value=18 Score=31.50 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=97.4
Q ss_pred eEEEEeCCCeEEEEecCCCe-------eEE--eeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc---CC------Ccc
Q 014104 124 LILTGVGDKVMRLWSLEGYK-------CVE--EYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR---NG------LRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~---~~------~~~ 184 (430)
.+++.+.+|.|+--.+.+.+ -+. .++..+....+......+.++ .+..|.++-... .. +..
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~ 84 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH 84 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence 66777788888765433211 111 112222233333333444444 777777665553 21 221
Q ss_pred ---cccCC-CCceeeeeEEEEc--CCceEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 185 ---VFPSR-EGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 185 ---~~~~~-~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.+... ...+..++.+..+ .+.++..+.+|.++--.+..- .....++. .+.+..+... ..+.++..
T Consensus 85 i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 85 VANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp HHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEE
T ss_pred HHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEE
Confidence 12222 2233333333322 345999999999998876432 22223333 3445444444 44678888
Q ss_pred eCCCeEEEEeCC--C---------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 251 SSLGSIAISGLS--S---------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 251 ~~dg~i~vwd~~--~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+..|.+..+... . |.....+. ....|.++...+.+..++..+..|.++.-.+..
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN--IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC--TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC--CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 889998888766 2 11112222 344677776666667888999999998887653
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.11 E-value=15 Score=37.62 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.1
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+.+++ ..++..++++-+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~-~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMI-FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEE-EETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEe-ecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3466666 777888999999999999999999999988764
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.41 E-value=10 Score=35.69 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=69.3
Q ss_pred CeEEEEecCC-CEEEE-EeCCCeEEEEeCCCC------ce-------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 235 PVTSLSLSED-QLIIS-GSSLGSIAISGLSSD------QR-------VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~-~~~dg~i~vwd~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
....+.++|+ .+++. |-.+.++.++|++.- +. ....+ ..-.....+|+++|+...+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceE
Confidence 3456778876 55444 456789999998741 11 22222 34478889999999544455689999
Q ss_pred EEEeCCCC----------ceeeeeecCCCceEEEE----EeeCCCCeEEEEc---CCCe----------EEEEEcCC
Q 014104 300 SCWDLRTM----------KSLWETRISPNVVYSLQ----HLQNDTSTLVVGG---IDGV----------LRVLDQNT 349 (430)
Q Consensus 300 ~i~d~~~~----------~~~~~~~~~~~~v~~l~----~~s~~~~~l~s~~---~dg~----------i~vwd~~~ 349 (430)
.-|++... ..+..+..|-.+--..+ .-.|+|++|++.. .|.. -.+.|+..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 99998753 33444554432211111 1357888888875 3433 36777763
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.21 E-value=14 Score=37.67 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=32.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888899999999999999999998887643
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.11 E-value=27 Score=31.10 Aligned_cols=134 Identities=7% Similarity=0.040 Sum_probs=80.3
Q ss_pred eEEEEECCCC--eeeEEeecC------CCCeEEEEec---C-----CCEEEEE-eCCCeEEEEeCCCCceeEEEec---C
Q 014104 214 TARVFDMYSR--KCSQIIRMH------CAPVTSLSLS---E-----DQLIISG-SSLGSIAISGLSSDQRVATLRS---T 273 (430)
Q Consensus 214 ~i~vwd~~~~--~~~~~~~~~------~~~i~~~~~~---~-----~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~---~ 273 (430)
.|.+||+.++ +.++.+.-. ...+..+.+. + +.+++.+ +..+.|.|+|+.+++.-+.+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999998 888777532 2356777776 2 2333333 3567899999999877655421 0
Q ss_pred C--------------CCCeEEEEEecC----CCEEEEEeCCCeEEEEeCCC-----Cceee--eeecCC---CceEEEEE
Q 014104 274 D--------------CTGIKTLCYNPC----SRLVFAGTTAGYASCWDLRT-----MKSLW--ETRISP---NVVYSLQH 325 (430)
Q Consensus 274 ~--------------~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~~~~~---~~v~~l~~ 325 (430)
. ...+..++++|+ ++.|.-..-.+ -++|.+.+ ..... +..+.. ..-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~- 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA- 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE-
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE-
Confidence 0 136888899987 67776554443 23444332 11111 111222 2223344
Q ss_pred ee-CCCCeEEEEcCCCeEEEEEcCC
Q 014104 326 LQ-NDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 326 ~s-~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+. .+|...++--..+.|..|+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 64 5677777777889999999874
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=80.90 E-value=26 Score=30.06 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=110.2
Q ss_pred ecCCeEEEEe--CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC--------------CeEEEEEcCCC
Q 014104 120 MKRGLILTGV--GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG--------------TRICIWRRNGL 182 (430)
Q Consensus 120 ~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--------------~~i~vwd~~~~ 182 (430)
+.+++++-.. .++.|...+.+.... ..+.. ..+.-++++++.|+ +... ..|+..++++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3455444332 345666666554332 22221 12345688999988 4432 46788888877
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEe----cCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEe-CCCeE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGS-SLGSI 256 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~-~dg~i 256 (430)
+........ ...+.+.+..|+-.. .+..|...++... ....+..+.. ..+++ ++.|+-.+ ....|
T Consensus 99 ~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 99 GSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred cceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 633222111 135566777766554 3456777777543 3344443332 23343 34444444 46788
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA--GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
.+-++..+.....+.+ .. ...+.|++.+|+-...+ ..|..-++.... ...+.. ..+. +++|++.+|+
T Consensus 170 y~~~l~g~~~~~l~~~----~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~---~~~~~g~~Iy 238 (302)
T 3s25_A 170 YRYDTASQSEALFYDC----NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE---HYNVYGSLIF 238 (302)
T ss_dssp EEEETTTTEEEEEECS----CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEE---EEEEETTEEE
T ss_pred EEEECCCCCEEEEeCC----Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc---eEEECCCEEE
Confidence 8889876554433331 22 23467999988865443 367777776443 333332 2232 3678888887
Q ss_pred EEc--CCCeEEEEEcC
Q 014104 335 VGG--IDGVLRVLDQN 348 (430)
Q Consensus 335 s~~--~dg~i~vwd~~ 348 (430)
-++ ..+.|..-++.
T Consensus 239 ~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 239 YQRGGDNPALCVVKND 254 (302)
T ss_dssp EEECSSSCEEEEEETT
T ss_pred EEECCCCcEEEEEECC
Confidence 653 23566666665
No 357
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=79.54 E-value=29 Score=29.77 Aligned_cols=123 Identities=10% Similarity=0.092 Sum_probs=67.7
Q ss_pred CeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEe----CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS----SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
..|+..++..++... +. ......++. .++.|+-.. .+..|..-++.. .....+.. +. + ..++|+++
T Consensus 88 ~~Iy~i~~dg~~~~~-l~--~~~~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~-~~--~--~~~~~~g~ 157 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV-LD--PDPCIYASL-IGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKN-HY--L--FTCNTSDR 157 (302)
T ss_dssp EEEEEEETTSCCCEE-EE--CSCEEEEEE-ETTEEEEEEESSSSCEEEEEEETTS-CCCEEEES-SC--C--CCSEEETT
T ss_pred CeEEEEeCCCCcceE-ee--cCCccEEEE-eCCEEEEEeecCCCCceEEEEECCC-CCeEEEeC-CC--c--eEeeEECC
Confidence 467888886665332 32 122223333 345555443 345677777764 33444543 22 2 45688888
Q ss_pred EEEEEeC-CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC--CeEEEEEcCCC
Q 014104 289 LVFAGTT-AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID--GVLRVLDQNTG 350 (430)
Q Consensus 289 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d--g~i~vwd~~~~ 350 (430)
.|+-.+. ...|+..++..+.....+. +... .. +.|++.+|+-...+ ..|..-++..+
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~-~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KP-VVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EE-EEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ce-eeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 8885554 5678888887654332222 2222 23 55888887765433 35666666533
No 358
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.47 E-value=30 Score=28.25 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=74.9
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCc-ccccCCCCcee----eeeEEEEcCCc--eEEEecCCeEEEEECCCCe
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SVFPSREGTFM----KGLCMRYFDPE--AVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~~~~~~~~~~----~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~ 224 (430)
.....++|+|++...+. .+|.+.-.+..+.. ..+......+. ..+...++++. |.++ .||.|+-++..+..
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD 118 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence 45668999998886667 88887776664422 12111111100 00122223333 4444 77999888764321
Q ss_pred ee------EEe-ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc------eeEEEecCCCCCeEEEEEecCCCEEE
Q 014104 225 CS------QII-RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ------RVATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 225 ~~------~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
.. ..+ ..-=..+..+.+.|+..|.+.. |+.+.-...-++. ....+-...-...+.+.|.|++.+.+
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence 11 111 1111367889999886677777 8886544333211 11112111222445567888888776
Q ss_pred EEeCCCeEE
Q 014104 292 AGTTAGYAS 300 (430)
Q Consensus 292 ~~~~dg~i~ 300 (430)
+. ++.++
T Consensus 198 v~--~g~~Y 204 (236)
T 1tl2_A 198 VQ--GGKFY 204 (236)
T ss_dssp EE--TTEEE
T ss_pred Ee--CCeEE
Confidence 65 67443
No 359
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=76.36 E-value=40 Score=29.63 Aligned_cols=229 Identities=10% Similarity=-0.049 Sum_probs=114.1
Q ss_pred eEEEEeccccceeEEEe-cCCeEEEEeC-CCeEEEEecCCCeeE--Eee-----ecCCceeEEEEecC---CCEEE-EE-
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGLILTGVG-DKVMRLWSLEGYKCV--EEY-----SLPNAASLVDFDFD---ESKIV-GL- 169 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~l~s~~~-dg~i~iwd~~~~~~~--~~~-----~~~~~~~~~~~~~~---~~~l~-~~- 169 (430)
.+..+...-..-..++| ++|.++.+.. .|.|++++..+++.. ..+ .+.....-++++|+ +..|. ..
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 45555555566788888 6775555555 899999987655432 222 12334556899885 44444 31
Q ss_pred --eCCeEEEEEcCCC----------ccccc---CCCCceeeeeEEEEcCCceEEEec-------------CCeEEEEECC
Q 014104 170 --IGTRICIWRRNGL----------RSVFP---SREGTFMKGLCMRYFDPEAVVGCE-------------DGTARVFDMY 221 (430)
Q Consensus 170 --~~~~i~vwd~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~vwd~~ 221 (430)
.++.|.-|..... +.++. ....|....+.+.+++...++.+. .|.|.-.+..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 3456666766542 11111 112233334555555543333221 2445444543
Q ss_pred CC---------eeeEEeecCCCCeEEEEecCCCEEEEEe--CCCeEEEEeCCCCc------------------eeEEEec
Q 014104 222 SR---------KCSQIIRMHCAPVTSLSLSEDQLIISGS--SLGSIAISGLSSDQ------------------RVATLRS 272 (430)
Q Consensus 222 ~~---------~~~~~~~~~~~~i~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~------------------~~~~~~~ 272 (430)
.. ..+. -.+|. ....++|+|+..|.++- .|+.=.+--+..+. ++..+..
T Consensus 183 G~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~ 260 (347)
T 3das_A 183 GEPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST 260 (347)
T ss_dssp SSBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred CCccCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence 21 0111 11333 23567887653344432 22212222222211 1222221
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee----eeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL----WETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+......++|. +|..++.....+.|....+.....+ .-+.+....+..++ ..|||.++++..
T Consensus 261 -~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~-~~pDG~lyv~td 326 (347)
T 3das_A 261 -DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVA-PAGGDKLWLVTS 326 (347)
T ss_dssp -TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEE-EEETTEEEEEEC
T ss_pred -CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEE-ECCCCcEEEEEc
Confidence 11245677776 4666666666666766666544321 12333346788888 888887665543
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=76.07 E-value=4.9 Score=39.09 Aligned_cols=38 Identities=8% Similarity=0.358 Sum_probs=33.1
Q ss_pred cceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec
Q 014104 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL 150 (430)
Q Consensus 113 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 150 (430)
..|.++.+++.++++-+.|+++|+||+.+++++.+...
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45777777777999999999999999999999988776
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=73.98 E-value=43 Score=28.87 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=103.1
Q ss_pred eEEEEeCCCeEEEEecCCCeeE-------E--eeecCCceeEEEEecCCCEE-EEEeCCeEEEEEcCC---------Ccc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCV-------E--EYSLPNAASLVDFDFDESKI-VGLIGTRICIWRRNG---------LRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~vwd~~~---------~~~ 184 (430)
++++.+.+|.|+--.+...+.. . .+...+....+......+.+ +.+..|.++-+.... +..
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~ 89 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN 89 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CB
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC
Confidence 7888999999988766543221 1 12222333333333344444 488888887776532 111
Q ss_pred ---cccCCCCc-eeeeeEEEE--cCCceEEEecCCeEEEEECCC-------CeeeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 185 ---VFPSREGT-FMKGLCMRY--FDPEAVVGCEDGTARVFDMYS-------RKCSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 185 ---~~~~~~~~-~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.+....+. +........ .+..++..+.+|.++...+.. |...-.+.. .+.+..+... +++.++..
T Consensus 90 i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~ 168 (312)
T 1suu_A 90 ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICL 168 (312)
T ss_dssp GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEE
T ss_pred hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEE
Confidence 11222222 222222211 234488899999999887632 222223333 4556555554 45778888
Q ss_pred eCCCeEEEEeCCC----C---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 251 SSLGSIAISGLSS----D---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 251 ~~dg~i~vwd~~~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+.+|.+..+.... + +-+.-+.-.....|..+..-+++..+++.+..|..+..++..
T Consensus 169 T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 169 SKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp ETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred eCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 9999999987643 1 112222221344666665555566788888999999888754
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.19 E-value=9.7 Score=39.84 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=32.5
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.+.+++ ..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~-~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMI-FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCE-EETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEee-ccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344555 567888999999999999999999999998764
No 363
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=69.53 E-value=58 Score=28.53 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=24.4
Q ss_pred CceeEEEEecCCC-EEEEEeCCeEEEEEcCC
Q 014104 152 NAASLVDFDFDES-KIVGLIGTRICIWRRNG 181 (430)
Q Consensus 152 ~~~~~~~~~~~~~-~l~~~~~~~i~vwd~~~ 181 (430)
.....+++.++++ .+++...+.|.+++.++
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g 48 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK 48 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC
Confidence 4567799999999 77788889999998654
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.00 E-value=61 Score=27.86 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=102.7
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCccc---------ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC---------
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSV---------FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--------- 222 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--------- 222 (430)
+...++ .+.+|.|+--.+..-... ....++........+.....++..+..|.++-.....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 344444 788888888776543211 1112223222333344455588888888877765421
Q ss_pred Cee---eEEeecCCCCeEEEEec----CCCEEEEEeCCCeEEEEeCCC-------CceeEEEecCCCCCeEEEEEecCCC
Q 014104 223 RKC---SQIIRMHCAPVTSLSLS----EDQLIISGSSLGSIAISGLSS-------DQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 223 ~~~---~~~~~~~~~~i~~~~~~----~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
|.. .-.+. ....|.++... ++..++..+..|.++...+.. |.....+. ....+..+.....+.
T Consensus 87 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~--~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 87 GQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN--DKDFVTSAEIVFKDE 163 (312)
T ss_dssp -CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC--TTCCEEEEEEECTTC
T ss_pred CcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC--CCCEEEEEEEeCCCC
Confidence 111 01122 12344444332 346788889999999887742 22222233 344666666655566
Q ss_pred EEEEEeCCCeEEEEeCCCC---------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 289 LVFAGTTAGYASCWDLRTM---------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.++..+.+|.+..+....- .....+.. .+.|.++. .-.++..+++.+..|..+..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~-~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVL-SVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEE-ECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEE-EECCCCeEEEEECCCceEEEEHH
Confidence 7888899999988887531 11222332 24555554 32345667778888888888775
No 365
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=65.74 E-value=70 Score=28.05 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=61.5
Q ss_pred EeecCCCCeEEEEecCCCEEEEEeC-CCeEEEEeCCCCcee--EEEe---cCCCCCeEEEEEecC---CCEEEEE---eC
Q 014104 228 IIRMHCAPVTSLSLSEDQLIISGSS-LGSIAISGLSSDQRV--ATLR---STDCTGIKTLCYNPC---SRLVFAG---TT 295 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~l~~~---~~ 295 (430)
.+...-...+.|+|.|+..++.+.. .|.|++++..+++.. ..+. .........|+++|+ +..|+.. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3333345678999998743444454 899999987655542 2121 112447899999995 3444432 23
Q ss_pred CCeEEEEeCCCC----------ceee-eeec-CCCceEEEEEeeCCCCeEEEEc
Q 014104 296 AGYASCWDLRTM----------KSLW-ETRI-SPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 296 dg~i~i~d~~~~----------~~~~-~~~~-~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
++.|.-|....+ +.+. .+.. ....-..|. |.|||.+.++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~-fgpDG~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA-FGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE-ECTTSCEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc-CCCCCCEEEEEC
Confidence 455666665541 1111 1211 112234577 999998666654
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=63.46 E-value=71 Score=27.37 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=96.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEE---------eeecCCceeEEEEecCCCE-EEEEeCCeEEEEEcCC---------Ccc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVE---------EYSLPNAASLVDFDFDESK-IVGLIGTRICIWRRNG---------LRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~---------~~~ 184 (430)
.+++.+.+|.|+--.+...+... .++..+....+......+. ++.+..|.+.-+.... +..
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~ 84 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 84 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE
Confidence 67888899999877665432221 1222233333333333444 4488888877666421 221
Q ss_pred ---cccCCCC-ceeeeeEEEE--cCCceEEEecCCeEEEEECCC-------CeeeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 185 ---VFPSREG-TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYS-------RKCSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 185 ---~~~~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.+....+ .+.....+.. .++.++..+.+|.++--.+.. +.....+..+ +.+..+... +++.++..
T Consensus 85 i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~ 163 (307)
T 1zi0_A 85 IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLF 163 (307)
T ss_dssp GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEE
T ss_pred hhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEE
Confidence 1122222 2222222211 233489999999999887642 2122223333 455555444 44677788
Q ss_pred eCCCeEEEEeCCCC-------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 251 SSLGSIAISGLSSD-------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 251 ~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+.+|.+..++...- +-+.-+.-.....|.++...+++..+++.+..|.++-.++.
T Consensus 164 T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 164 SAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp ETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 88998888876421 11221222134467776655556678888999998888764
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=62.88 E-value=94 Score=28.54 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=58.1
Q ss_pred CCeEEEEecCCC--EEEEEeCCCeEEEEeCCCC---ceeEEEec--------CCCCCeEEEEEecC----CCEEEEEeC-
Q 014104 234 APVTSLSLSEDQ--LIISGSSLGSIAISGLSSD---QRVATLRS--------TDCTGIKTLCYNPC----SRLVFAGTT- 295 (430)
Q Consensus 234 ~~i~~~~~~~~~--~l~~~~~dg~i~vwd~~~~---~~~~~~~~--------~~~~~v~~~~~~~~----~~~l~~~~~- 295 (430)
...+.|+|.|+. .++.+...|.|++++.... ..+..+.. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 346789998873 3666678899999975422 12222221 01357889999996 433333221
Q ss_pred -C----------CeEEEEeCCC----------Cceeeeee--cCCCceEEEEEeeCCCCeEEEEcC
Q 014104 296 -A----------GYASCWDLRT----------MKSLWETR--ISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 296 -d----------g~i~i~d~~~----------~~~~~~~~--~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+ ..|.-|.+.. .+.+..+. .....-..|+ |.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~-fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL-FGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEE-ECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEe-ECCCCcEEEEeCC
Confidence 1 1344455532 12232322 1112356787 9999987666654
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.44 E-value=43 Score=31.67 Aligned_cols=60 Identities=7% Similarity=0.115 Sum_probs=40.6
Q ss_pred CeEEEEecCCCEEEEEeC-------------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 235 PVTSLSLSEDQLIISGSS-------------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
....|.|.++..|..+.+ ...|..++..+++....+.......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456788886533333222 126777787788876666543445799999999999888763
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=60.93 E-value=33 Score=32.71 Aligned_cols=59 Identities=20% Similarity=0.121 Sum_probs=41.6
Q ss_pred CeEEEEEecCCCEEEEEeCC------------CeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEE
Q 014104 277 GIKTLCYNPCSRLVFAGTTA------------GYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~ 336 (430)
..-.|+|+|.|+++++-..+ ..+.+.+..+++...-+.+.. ..++.++ |+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~-fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS-FSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEE-ECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCee-ECCCCCEEEEE
Confidence 45779999999977664432 246666777777655555443 6788888 99999888765
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.12 E-value=16 Score=35.55 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.+..++++-+.|.++|+||+.+++++.+...
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999999988876
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=57.76 E-value=1.8e+02 Score=30.30 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=31.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34555666788899999999999999999998887644
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.64 E-value=1e+02 Score=26.65 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=99.1
Q ss_pred eEEEEeCCCeEEEEecCCCe----eEEeeecCCceeEEEEecCCCEE-EEEeCCeEEEEEcCC---------Ccc---cc
Q 014104 124 LILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASLVDFDFDESKI-VGLIGTRICIWRRNG---------LRS---VF 186 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~vwd~~~---------~~~---~~ 186 (430)
.+++.+.+|.|+--.+...+ .-..++..+....+......+.+ +.+..|.+.-+.... +.. .+
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i 86 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANII 86 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTS
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhcc
Confidence 78888999999876544211 11122223333333333344444 488888877666421 221 12
Q ss_pred cCCCCc-eeeeeEEEEc--CCceEEEecCCeEEEEECCC--------CeeeEEeecCCCCeEEEEec-CCCEEEEEeCCC
Q 014104 187 PSREGT-FMKGLCMRYF--DPEAVVGCEDGTARVFDMYS--------RKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLG 254 (430)
Q Consensus 187 ~~~~~~-~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg 254 (430)
....+. +.....+..+ ++.++.++.+|.++-..+.. |.....+.. .+.+..+... +++.++..+.+|
T Consensus 87 ~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G 165 (323)
T 1wp5_A 87 PIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNG 165 (323)
T ss_dssp CCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTS
T ss_pred CCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCC
Confidence 222222 2222222221 33589999999999987642 222222332 2455555444 456788888899
Q ss_pred eEEEEeCCC-------CceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC
Q 014104 255 SIAISGLSS-------DQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 255 ~i~vwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 306 (430)
.+..++... .+-++-+.-.....|.++..-+++. .+++.+..|..+..++..
T Consensus 166 ~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 166 YALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 988887642 1112222221334566665544455 788888899888877654
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.35 E-value=68 Score=30.40 Aligned_cols=60 Identities=20% Similarity=0.100 Sum_probs=42.9
Q ss_pred CeEEEEEecCCCEEEEEeC------------CCeEEEEeCCCCceeeeeecC-CCceEEEEEeeCCCCeEEEEc
Q 014104 277 GIKTLCYNPCSRLVFAGTT------------AGYASCWDLRTMKSLWETRIS-PNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~s~~~~~l~s~~ 337 (430)
....|.|+++|.+.++... ...|..++..+++...-+... ...++.++ |+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGia-fSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS-FSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEE-ECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCE-ECCCCCEEEEEE
Confidence 5778999999987774322 125777787777765555433 35689998 999999887663
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=54.96 E-value=1.6e+02 Score=28.79 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=107.7
Q ss_pred CeEEEEecCCCeeEE-eeecCCc-e--------eEEEEecCCCEEEEEe-----------CCeEEEEEcCCCc----ccc
Q 014104 132 KVMRLWSLEGYKCVE-EYSLPNA-A--------SLVDFDFDESKIVGLI-----------GTRICIWRRNGLR----SVF 186 (430)
Q Consensus 132 g~i~iwd~~~~~~~~-~~~~~~~-~--------~~~~~~~~~~~l~~~~-----------~~~i~vwd~~~~~----~~~ 186 (430)
..++++|+.+++.+. .|. +.. . ..++|..++..+++.. ...|+.|.+-+.. .++
T Consensus 156 ~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~ 234 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLF 234 (711)
T ss_dssp EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEE
T ss_pred eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEe
Confidence 379999999998774 222 211 1 3357763444444321 2568888887653 344
Q ss_pred cCCCCceeeeeEEEEcCCc-----eEEEe---cCCeEEEEECCC--CeeeEEeecCCCCeEEEEecCCCEEEEE------
Q 014104 187 PSREGTFMKGLCMRYFDPE-----AVVGC---EDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSEDQLIISG------ 250 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-----l~~~~---~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~------ 250 (430)
...............++.. +++.+ ....+.+.|... ++. ..+...... .-+....+.+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 312 (711)
T 4hvt_A 235 EVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-TLQGSFKEYVFWLLRSDWKF 312 (711)
T ss_dssp ECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-EEEEEETTEEEEECSSCEEE
T ss_pred ccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-eEeeeECCEEEEEECccccc
Confidence 4444332111112223331 33333 224566667543 332 223222221 11222233333322
Q ss_pred ----eCCCeEEEEeCCCCc-------eeEE-EecCCCCCeEEEEEecCCCEEEEEeCCCe--EEEEeCCCCc-eeee-ee
Q 014104 251 ----SSLGSIAISGLSSDQ-------RVAT-LRSTDCTGIKTLCYNPCSRLVFAGTTAGY--ASCWDLRTMK-SLWE-TR 314 (430)
Q Consensus 251 ----~~dg~i~vwd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~-~~~~-~~ 314 (430)
...+.|...|+.++. .... +.......+..+.+..+ .++++...++. +.++|+.+++ .... +.
T Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~ 391 (711)
T 4hvt_A 313 KSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK 391 (711)
T ss_dssp TTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEEC
T ss_pred ccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccC
Confidence 246778899987642 2223 33223346778888764 56777777764 6777776664 2223 22
Q ss_pred cC-CCceEEEEEeeCCCCe-EEEEc---CCCeEEEEEcCCCc
Q 014104 315 IS-PNVVYSLQHLQNDTST-LVVGG---IDGVLRVLDQNTGE 351 (430)
Q Consensus 315 ~~-~~~v~~l~~~s~~~~~-l~s~~---~dg~i~vwd~~~~~ 351 (430)
.. .+.+.... .++++.. +++.+ .-+.+..+|+. ++
T Consensus 392 lp~~~~~~~~~-~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 392 LPYQNAIFGMS-SYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp CCSTTCEEEEE-CCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred CCCCeEEEEEe-ecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 21 24455554 5666654 44433 34678888886 44
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.75 E-value=50 Score=31.45 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=41.4
Q ss_pred eEEEEecCC-CEEEEEeCC------------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 236 VTSLSLSED-QLIISGSSL------------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
.-.|+|++. ++++.-..+ ..+.+.+..+++..+.+..+....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456888875 544433221 3466777778888777777666799999999999988765
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.79 E-value=1.4e+02 Score=26.45 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=99.1
Q ss_pred eEEEEeCCCeEEEEecCC---------CeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCC---------Ccc
Q 014104 124 LILTGVGDKVMRLWSLEG---------YKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG---------LRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~---------~~~ 184 (430)
++++.+.+|.|+--.+.. +..-..++..+....+......+.++ .+..|.+.-+.... +..
T Consensus 9 ~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~ 88 (370)
T 3l6v_A 9 VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRP 88 (370)
T ss_dssp EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcC
Confidence 888999999998765432 11222233333344344444445454 88888877666421 211
Q ss_pred cc---cCC-CCceeeeeEEEEc--CCceEEEecCCeEEEEECCC-------CeeeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 185 VF---PSR-EGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYS-------RKCSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 185 ~~---~~~-~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
+. ... ...+...+.+..+ +..++.++..|.++-..+.. |.....++. .+.+..+... .++.++..
T Consensus 89 i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~ 167 (370)
T 3l6v_A 89 IINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLF 167 (370)
T ss_dssp GGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEE
T ss_pred HhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEE
Confidence 11 112 2233332222211 23599999999999887532 222223332 3445555444 44677888
Q ss_pred eCCCeEEEEeCCCC-------ceeEEEecCCCCCeEEEEEec-----------------------------------CCC
Q 014104 251 SSLGSIAISGLSSD-------QRVATLRSTDCTGIKTLCYNP-----------------------------------CSR 288 (430)
Q Consensus 251 ~~dg~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~-----------------------------------~~~ 288 (430)
+.+|.+..++...- +-++-+.-.....|.++...+ ++.
T Consensus 168 T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~ 247 (370)
T 3l6v_A 168 ASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVA 247 (370)
T ss_dssp ETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------C
T ss_pred eCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCc
Confidence 88898888875321 112222211334565555544 345
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 014104 289 LVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~ 306 (430)
.+++.+..|..+...+..
T Consensus 248 ~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 248 YILTATENGYGKRTPLAE 265 (370)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred eEEEeeCCCCEEEEEHHH
Confidence 788889999988887753
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=44.44 E-value=1.4e+02 Score=25.02 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=64.4
Q ss_pred CCceEEEecCCeEEEEECCCC------eeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCC---------Cce
Q 014104 203 DPEAVVGCEDGTARVFDMYSR------KCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSS---------DQR 266 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~---------~~~ 266 (430)
.+.++..+.+|.++-..+..- .....++. .+.+..+... .++.++..+..|.+..++... |..
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 345899999999999876432 22222332 3455555444 346788888999988887532 222
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
...+. ....|..+...+++..++..+..|.++...+..
T Consensus 159 ~i~L~--~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 159 GIKLE--KNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CCCCC--TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEccC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 22232 334677766666677888889999998887653
No 378
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=43.40 E-value=1.7e+02 Score=25.79 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=112.3
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCC-e----------eeEEeec-CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSR-K----------CSQIIRM-HCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~----------~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
..+.......+.-..||.|..|-.... + ....+.. ....+..++++.+ ...+.-..||.|..|-...
T Consensus 56 ~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~ 135 (389)
T 3kci_A 56 VQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135 (389)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCG
T ss_pred EEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCC
Confidence 334444444666678999999964321 1 1111111 1234555666644 5566667899999996432
Q ss_pred -C----------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-Cce----------eeeeec-CCCce
Q 014104 264 -D----------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKS----------LWETRI-SPNVV 320 (430)
Q Consensus 264 -~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~----------~~~~~~-~~~~v 320 (430)
+ .....+.......|..++. ...+.++-..+|.|+.|-... +++ ...+.. ....|
T Consensus 136 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 1 0111122111224655555 445666667899999996532 110 001111 12345
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEcCC-Cc---------e------------EEEEEeccCcceeeeccCCceEEEee
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQNT-GE---------V------------LSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-~~---------~------------~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
..++ ........+.-..||.|+.|-... ++ . +..+.. +....++-..+|.++.|-
T Consensus 214 ~~ia-~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 214 VDIA-CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp EEEE-ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred EEEE-EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEe
Confidence 5665 433234566667889999996431 11 0 111111 011234445677777654
Q ss_pred cccccC---C-----cccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEec
Q 014104 379 GRRLSA---G-----CCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 379 ~~~~~~---~-----~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
....-. + .....+..-....|..|+......+.-..||.|..|-..
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCC
Confidence 322110 0 001111111123577888866666666889999999754
No 379
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=42.24 E-value=2.3e+02 Score=26.80 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=89.8
Q ss_pred eEEEEeCCCCceeEEEec-------CCCCCeEEEEEecCCC-EEEEEeCCCe----------------------------
Q 014104 255 SIAISGLSSDQRVATLRS-------TDCTGIKTLCYNPCSR-LVFAGTTAGY---------------------------- 298 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~dg~---------------------------- 298 (430)
.|.+|++. ++.+..+.. .|-.++....|+-||+ -+++.+.+|+
T Consensus 152 ~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 45555553 444444432 1333566666766664 5566655554
Q ss_pred EEEEeCCCCceeeeeecC--CCc---------------eEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceEEEEEe
Q 014104 299 ASCWDLRTMKSLWETRIS--PNV---------------VYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~--~~~---------------v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+.++|-.+|+.+.+..-. .+. ..+++.+.-+...++.+- ....|..||...+++...+..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788888888887664421 111 223442332223344332 223588999988887666655
Q ss_pred ccCc-------------ceeeeccCCceEEEeecccc--cCCcccccCCCCCCCCeeEEEEc----CeEEEEeeCCC---
Q 014104 359 DIGS-------------ASSSSNKVSGVIERNEGRRL--SAGCCIDRIPKTIRPPITCLAVG----MKKVVTTHNSK--- 416 (430)
Q Consensus 359 ~~~~-------------~~~~~~s~d~~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~----~~~l~t~~~Dg--- 416 (430)
+... ..++=...||.-.+.-+... ..+..+.....+|...+..-.|+ |--++.+.+++
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~ 390 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAK 390 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSS
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCC
Confidence 4421 12233334444433322222 12344555666888877766664 33466655541
Q ss_pred -eEEEEEecCCCc
Q 014104 417 -YIRLWKFNYSDK 428 (430)
Q Consensus 417 -~v~vw~~~~~~~ 428 (430)
-..+.|..+|+.
T Consensus 391 ~G~~~~dA~tG~v 403 (591)
T 2zux_A 391 YGLSFRDAATGKI 403 (591)
T ss_dssp CSEEEEETTTCCE
T ss_pred CccEEEECCCCcE
Confidence 233456555553
No 380
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=36.74 E-value=2.2e+02 Score=25.02 Aligned_cols=138 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred eEEEecCCeEEEEECCCCeeeEEe--ecCCCCeEEEEecC--CCEEEEEeCCC----eEEEEeCCCCceeEEEecC----
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSE--DQLIISGSSLG----SIAISGLSSDQRVATLRST---- 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~~~--~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~---- 273 (430)
|.+|+..|.+++-+-..++....+ ......|.+|++.| .+.+..++..| .|...+ ..++.-..+...
T Consensus 25 l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~ 103 (394)
T 3b7f_A 25 LLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFN 103 (394)
T ss_dssp EEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCC
T ss_pred EEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCC
Q ss_pred ---------CCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeeeeec-------------------CCCceEEE
Q 014104 274 ---------DCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMKSLWETRI-------------------SPNVVYSL 323 (430)
Q Consensus 274 ---------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~v~~l 323 (430)
....|.+++++|. ...+.+++..+.|...+-. ++.-..+.. ....+.++
T Consensus 104 ~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i 182 (394)
T 3b7f_A 104 KAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSI 182 (394)
T ss_dssp CCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEE
T ss_pred CcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEE
Q ss_pred EEeeC-CCCeEEEEcCCCeEEEEE
Q 014104 324 QHLQN-DTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 324 ~~~s~-~~~~l~s~~~dg~i~vwd 346 (430)
. ++| +...|+.+..++.|...+
T Consensus 183 ~-~d~~~~~~l~vg~~~ggl~~s~ 205 (394)
T 3b7f_A 183 L-VDPRDPKHLYIGMSSGGVFEST 205 (394)
T ss_dssp E-ECTTCTTCEEEEEETBEEEEES
T ss_pred E-ECCCCCCEEEEEECCCCEEEEC
No 381
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.68 E-value=2.2e+02 Score=24.48 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=99.8
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCc----ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC---------CCeeeE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---------SRKCSQ 227 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---------~~~~~~ 227 (430)
+...++ .+.+|.|+--.+...+ ......++........+.....++..+..|.++-+... .|.++.
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 334444 7788888876654221 11122233333333344455568888888887665442 122211
Q ss_pred E---eecCCCCeEEE-EecC---CCEEEEEeCCCeEEEEeCCC--------CceeEEEecCCCCCeEEEEEecCCCEEEE
Q 014104 228 I---IRMHCAPVTSL-SLSE---DQLIISGSSLGSIAISGLSS--------DQRVATLRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 228 ~---~~~~~~~i~~~-~~~~---~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
. +. ....|.++ ...+ +.+++.++.+|.++.-.+.. |.....+. ..+.+..+........++.
T Consensus 84 ~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~--e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 84 NIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK--NDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC--TTCCEEEEEEECSCSEEEE
T ss_pred hccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC--CCCEEEEEEEeCCCCEEEE
Confidence 1 22 22345554 3332 45788999999999987741 22222333 2345666655555667888
Q ss_pred EeCCCeEEEEeCCCCce---------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 293 GTTAGYASCWDLRTMKS---------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.+|.+..++...-.. ...+.. .+.|.++..+.++...+++.+..|..+..++.
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 88999988887653211 112221 24455655343332267777777777776664
No 382
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=32.28 E-value=2.9e+02 Score=25.19 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=33.3
Q ss_pred CeEEEEEecCCC-EEEEEeCCCeEEEEeCCCC---ceeeeee---------cCCCceEEEEEeeCC
Q 014104 277 GIKTLCYNPCSR-LVFAGTTAGYASCWDLRTM---KSLWETR---------ISPNVVYSLQHLQND 329 (430)
Q Consensus 277 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~---------~~~~~v~~l~~~s~~ 329 (430)
....|+|.|+|. .|+++...|.|++++.... +.+..+. ........|+ ++|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia-~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLA-FHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEE-ECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeE-eCCC
Confidence 578999999996 4555567899999975422 1222111 0134577888 8886
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=29.76 E-value=2.7e+02 Score=23.99 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=81.6
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCc-------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC--CC--------
Q 014104 162 DESKIV-GLIGTRICIWRRNGLR-------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY--SR-------- 223 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~-------- 223 (430)
+...++ .+..|.++.-.+.... .......+..............++..+..|.+..+... .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 355555 9999999998875422 12222223222223333344558888999998888765 21
Q ss_pred -eeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCC-------ceeEEEecCC-CCCeEEEEEecCCCEEEEE
Q 014104 224 -KCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSD-------QRVATLRSTD-CTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 224 -~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 293 (430)
...-.+. ....|.++... ++..++..+..|.++.-.+..- +-+..+.... .+.+..+....+...++..
T Consensus 188 Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~ 266 (327)
T 3uc1_A 188 GVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAV 266 (327)
T ss_dssp CEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred CeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEE
Confidence 1111222 23456666555 4578899999999988875421 2222222111 3345555444445566667
Q ss_pred eCCCeEEEEeCCC
Q 014104 294 TTAGYASCWDLRT 306 (430)
Q Consensus 294 ~~dg~i~i~d~~~ 306 (430)
+.+|.+.-++...
T Consensus 267 T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 267 TSGGGVIRTAARQ 279 (327)
T ss_dssp EGGGCEEEEEGGG
T ss_pred cCCCeEEEEehhh
Confidence 7778777776643
No 384
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=29.03 E-value=2.6e+02 Score=26.15 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=44.1
Q ss_pred CeEEEEec--CC-CEEEEEeCCCeEEEEeCC-CC--ceeEEEecCCCCCe-EEEEEecCCCEEEEEeCCCeEEE
Q 014104 235 PVTSLSLS--ED-QLIISGSSLGSIAISGLS-SD--QRVATLRSTDCTGI-KTLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 235 ~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~-~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i 301 (430)
..+.|+.. .+ ..+..|+.+|.|.-.-+. .+ ..+..+......+| ..|.++++...|++++.++.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 46677665 34 567788999987644443 21 22334433244577 48999999999999988886555
No 385
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=26.99 E-value=2.2e+02 Score=26.71 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=43.2
Q ss_pred CeEEEEecC--C-CEEEEEeCCCeEEEEeCCCC----ceeEEEecCC-CCCeE-EEEEecCCCEEEEEeCCCeEEE
Q 014104 235 PVTSLSLSE--D-QLIISGSSLGSIAISGLSSD----QRVATLRSTD-CTGIK-TLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 235 ~i~~~~~~~--~-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~dg~i~i 301 (430)
..++++... + ..+..|+.+|.|.-..+..+ ..+..+.-.. ..+|. .|.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 466666653 3 57888999998765555422 1233333212 45775 8999999999999887764444
No 386
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=26.32 E-value=1.1e+02 Score=24.24 Aligned_cols=97 Identities=7% Similarity=-0.016 Sum_probs=60.0
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEE-EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
....+.+|.+..+.-+.-+.. +.+..|.....+-+. ...+|+|.+-+..++.++..... .+.... +....
T Consensus 67 ng~~lt~Wa~~~~nw~wgY~~-----~ds~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~n---Gvv~~~-C~~s~ 137 (206)
T 1sr4_A 67 NGALLTVWALAKRNWLWAYPN-----IYSQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGN---GLIHDI-CSLDK 137 (206)
T ss_dssp TSEEEEECSCSTTCBEEEEEG-----GGCGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETT---EEEEEC-CCTTC
T ss_pred CCCEEEEEecCCCcceeeecc-----cccCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccC---CeEEec-CCCCC
Confidence 344678999988877766653 112233333344444 56789999999999888876432 232222 22221
Q ss_pred ---CeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 331 ---STLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 331 ---~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.+=+.-...|.|.|=++.+++|+....
T Consensus 138 ~~Q~wsiiPttnGAVQIKnvatg~CL~t~~ 167 (206)
T 1sr4_A 138 LAQEFELLPTDSGAVVIKSVSQGRCVTYNP 167 (206)
T ss_dssp GGGCEEEEEBTTSCEEEEETTTCCEEEECS
T ss_pred cccEEEEecCCCccEEEEECCCCccCCccC
Confidence 122334557888888999999998654
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.55 E-value=4.3e+02 Score=24.96 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=70.3
Q ss_pred EEEEECCCCeeeEEeecC--CCC---------------eEEEEecCC--CEEEEEe---CCCeEEEEeCCCCcee--EEE
Q 014104 215 ARVFDMYSRKCSQIIRMH--CAP---------------VTSLSLSED--QLIISGS---SLGSIAISGLSSDQRV--ATL 270 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~--~~~---------------i~~~~~~~~--~~l~~~~---~dg~i~vwd~~~~~~~--~~~ 270 (430)
+.++|-.+|+.+.+..-. .+. ..++++..+ -.++.+- ....+..||.+.+++. ..+
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788888888877765421 111 234454433 2333332 2235888998877653 334
Q ss_pred ecCCC----------CCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCC--CeEEEE
Q 014104 271 RSTDC----------TGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDT--STLVVG 336 (430)
Q Consensus 271 ~~~~~----------~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~--~~l~s~ 336 (430)
..... ..+.-..+.-||+ -++.|+. ++| .+|+.+... .+|...+.--. +.|+. ..++.+
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~d-ldP~r~GlEv~~~ 383 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGD-LDPGRPGLEVFQV 383 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEEC-CCTTSSSCEEEEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEee-cCCCCCCcEEEEE
Confidence 33111 1334444444553 3333221 122 123333322 25666555555 77774 356666
Q ss_pred cCCC----eEEEEEcCCCceEEEEEe
Q 014104 337 GIDG----VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 337 ~~dg----~i~vwd~~~~~~~~~~~~ 358 (430)
.+++ -..+.|..+|+.+.....
T Consensus 384 ~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 384 HEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred ecCCCCCCccEEEECCCCcEEEEcCC
Confidence 5541 345678888888877754
No 388
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.49 E-value=3.1e+02 Score=22.88 Aligned_cols=141 Identities=9% Similarity=0.066 Sum_probs=80.9
Q ss_pred CCceEEEecCCeEEEEE---CCCCeeeEEeecCCCCeEEEEec--CCCEEEEEeCCCeEEEEeCCCC------ceeEEEe
Q 014104 203 DPEAVVGCEDGTARVFD---MYSRKCSQIIRMHCAPVTSLSLS--EDQLIISGSSLGSIAISGLSSD------QRVATLR 271 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~ 271 (430)
...++.-+.+|.++-.. +..+.....+. ....|..+... ++..++..+.+|.++-..+..- .....+.
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk 113 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT 113 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence 33466666677665433 22211100132 24455555433 3478999999999999886542 2222233
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM---------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
....+..+........++..+..|.+..++...- .....+.. .+.|..+. ..+++..++..+..|.+
T Consensus 114 --egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~-~~~~~~~ll~~T~~G~~ 189 (276)
T 3no0_A 114 --EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLR-IWNGEPYLLVITAKGRV 189 (276)
T ss_dssp --TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEE-EESSCSEEEEEETTSCE
T ss_pred --CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEE-EeCCCCEEEEEeCCCcE
Confidence 3346666666656678888899999888876431 11122322 24555555 33445677777788887
Q ss_pred EEEEcC
Q 014104 343 RVLDQN 348 (430)
Q Consensus 343 ~vwd~~ 348 (430)
+...+.
T Consensus 190 kr~~~~ 195 (276)
T 3no0_A 190 KKISHE 195 (276)
T ss_dssp EEEEGG
T ss_pred EEeEHH
Confidence 777664
No 389
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=24.05 E-value=1.3e+02 Score=23.45 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=24.1
Q ss_pred ccceeEEEecCC---eEEEEeCCCeEEEEecCCCeeE
Q 014104 112 SVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYKCV 145 (430)
Q Consensus 112 ~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~ 145 (430)
.+.+.++.|+++ .+++...++++.++|.+-|+..
T Consensus 118 ~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF~ 154 (188)
T 1ukf_A 118 RKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQ 154 (188)
T ss_dssp CEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEEEE
T ss_pred CceEEEEEecCCCceeEEeccCCCeEEEeCCCCceee
Confidence 445666777655 6777777888888888877643
No 390
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.65 E-value=3.1e+02 Score=25.36 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=42.2
Q ss_pred CeEEEEecC-----C--CEEEEEeCCCeEEEEeCC-CCc-------eeEEEecC-CCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 235 PVTSLSLSE-----D--QLIISGSSLGSIAISGLS-SDQ-------RVATLRST-DCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 235 ~i~~~~~~~-----~--~~l~~~~~dg~i~vwd~~-~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
..++|+... + ..+..|+.+|.|.-.-+. .+. .+..+... ...+|..|.+++++.+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 356666541 2 467788999976544332 211 22333321 3468999999999999999998875
Q ss_pred EEE
Q 014104 299 ASC 301 (430)
Q Consensus 299 i~i 301 (430)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.92 E-value=2.6e+02 Score=26.22 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=40.1
Q ss_pred CeEEEEEecCC--CEEEEEeCCCeEEEEeCCCC----ceeeeee--cCCCceE-EEEEeeCCCCeEEEEcCCCeEEE
Q 014104 277 GIKTLCYNPCS--RLVFAGTTAGYASCWDLRTM----KSLWETR--ISPNVVY-SLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 277 ~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~----~~~~~~~--~~~~~v~-~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
.+++|+....+ ..++.|+.+|.|.-..+... ..+.++. ....+|. .|. +++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~-~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMA-FSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCE-ECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceE-EccCCCeEEEEecccccee
Confidence 35666665433 35668889998765544322 1222222 2235674 787 8888888988876654443
No 392
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.06 E-value=3.1e+02 Score=25.35 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=42.1
Q ss_pred CeEEEEEecC----C--CEEEEEeCCCeEEEEeCC-CCc-------eeeeeec--CCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 277 GIKTLCYNPC----S--RLVFAGTTAGYASCWDLR-TMK-------SLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 277 ~v~~~~~~~~----~--~~l~~~~~dg~i~i~d~~-~~~-------~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..++|+...- + ..++.|+.+|.|.-.-+. .+. .+.++.. ...+|..|. ++++..+|++++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~-l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAME-LSTKQQQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEE-EETTTTEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEE-EcCCCCEEEEEECCe
Confidence 4577766532 3 356688999976444332 211 2223332 346889998 999999999998877
Q ss_pred eEEE
Q 014104 341 VLRV 344 (430)
Q Consensus 341 ~i~v 344 (430)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 393
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.00 E-value=56 Score=20.70 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=19.5
Q ss_pred CccCCcHHHHHHHhcCC--ChhhhHHHHhh
Q 014104 23 TIESLNGDIICMIFSSL--GFFDLVRCSAV 50 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l--~~~~l~~~~~v 50 (430)
+|..||.++-..|.... +|.++.-...+
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsSl~VF~~L 37 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSSLEIFEEL 37 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhCccHHHHHHHH
Confidence 79999999999886554 45555444444
Done!